Query 013939
Match_columns 433
No_of_seqs 159 out of 1043
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 19:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4n_C Nuclear protein SNF4; C 100.0 3E-36 1E-40 296.7 24.3 282 5-413 27-321 (323)
2 3kh5_A Protein MJ1225; AMPK, A 100.0 1.4E-34 4.8E-39 277.1 23.8 267 9-411 4-280 (280)
3 2qrd_G Protein C1556.08C; AMPK 100.0 3.4E-34 1.2E-38 283.2 26.1 300 5-429 19-332 (334)
4 3ddj_A CBS domain-containing p 100.0 8.3E-34 2.9E-38 275.9 21.2 265 4-413 16-286 (296)
5 2v8q_E 5'-AMP-activated protei 100.0 8E-34 2.7E-38 280.5 21.1 280 4-413 31-324 (330)
6 2yzq_A Putative uncharacterize 100.0 3.7E-33 1.3E-37 268.4 15.7 275 9-414 2-281 (282)
7 3ddj_A CBS domain-containing p 99.9 3.5E-23 1.2E-27 200.9 11.9 188 92-411 18-213 (296)
8 3kh5_A Protein MJ1225; AMPK, A 99.9 1.3E-22 4.6E-27 193.8 14.0 187 7-271 83-278 (280)
9 2yzq_A Putative uncharacterize 99.9 1E-21 3.5E-26 188.4 13.8 190 7-272 59-277 (282)
10 3t4n_C Nuclear protein SNF4; C 99.9 2E-21 6.9E-26 190.8 14.2 196 8-272 108-318 (323)
11 4esy_A CBS domain containing m 99.8 5.1E-21 1.8E-25 172.1 11.0 151 211-419 18-169 (170)
12 2v8q_E 5'-AMP-activated protei 99.8 5.1E-20 1.8E-24 181.5 12.5 189 17-272 125-321 (330)
13 2qrd_G Protein C1556.08C; AMPK 99.8 2.5E-19 8.6E-24 176.6 16.2 186 14-272 113-313 (334)
14 4esy_A CBS domain containing m 99.8 4E-19 1.4E-23 159.7 5.5 131 5-200 15-162 (170)
15 3i8n_A Uncharacterized protein 99.7 9.5E-18 3.2E-22 143.8 12.0 122 209-412 4-129 (130)
16 3lv9_A Putative transporter; C 99.7 1.3E-17 4.4E-22 145.9 11.9 123 208-413 20-146 (148)
17 3lhh_A CBS domain protein; str 99.7 1.7E-17 6E-22 149.6 13.0 124 208-414 39-166 (172)
18 2nyc_A Nuclear protein SNF4; b 99.7 1.6E-17 5.6E-22 143.1 11.1 136 209-414 6-143 (144)
19 3nqr_A Magnesium and cobalt ef 99.7 9E-18 3.1E-22 143.4 8.8 120 211-412 3-126 (127)
20 3k6e_A CBS domain protein; str 99.7 2.7E-17 9.4E-22 146.9 11.9 135 5-204 12-146 (156)
21 3jtf_A Magnesium and cobalt ef 99.7 2.8E-17 9.6E-22 140.8 10.9 119 211-413 5-127 (129)
22 3lfr_A Putative metal ION tran 99.7 1.4E-17 4.9E-22 144.2 8.7 122 211-413 3-128 (136)
23 3k6e_A CBS domain protein; str 99.7 2.4E-17 8.2E-22 147.3 10.2 126 212-414 16-144 (156)
24 3fhm_A Uncharacterized protein 99.7 5.4E-17 1.8E-21 144.8 11.0 139 198-415 11-153 (165)
25 3kpb_A Uncharacterized protein 99.7 5.6E-17 1.9E-21 136.4 10.2 119 212-413 2-121 (122)
26 2yzi_A Hypothetical protein PH 99.7 2.3E-16 7.9E-21 135.6 13.3 126 209-415 5-132 (138)
27 3hf7_A Uncharacterized CBS-dom 99.7 3.7E-17 1.3E-21 140.6 8.1 123 212-413 3-128 (130)
28 4gqw_A CBS domain-containing p 99.7 9E-17 3.1E-21 139.5 10.4 138 211-414 5-145 (152)
29 3hf7_A Uncharacterized CBS-dom 99.7 1.6E-16 5.3E-21 136.7 11.3 124 9-200 3-127 (130)
30 3oco_A Hemolysin-like protein 99.7 7.7E-17 2.6E-21 142.1 9.5 121 211-413 20-144 (153)
31 3lv9_A Putative transporter; C 99.7 4E-16 1.4E-20 136.3 13.7 126 4-200 19-145 (148)
32 3i8n_A Uncharacterized protein 99.7 1.9E-16 6.4E-21 135.6 11.1 126 4-199 2-128 (130)
33 3lqn_A CBS domain protein; csg 99.7 3E-16 1E-20 137.0 11.9 134 5-203 12-146 (150)
34 2ef7_A Hypothetical protein ST 99.7 8.5E-16 2.9E-20 131.2 13.6 127 6-204 2-129 (133)
35 3k2v_A Putative D-arabinose 5- 99.7 4.7E-17 1.6E-21 142.6 5.8 137 190-408 9-148 (149)
36 2ef7_A Hypothetical protein ST 99.7 3.5E-16 1.2E-20 133.7 11.0 125 210-415 3-128 (133)
37 3fv6_A YQZB protein; CBS domai 99.7 2.1E-16 7.2E-21 140.1 10.0 123 210-412 16-144 (159)
38 3sl7_A CBS domain-containing p 99.7 9.9E-17 3.4E-21 143.6 7.8 149 212-412 5-156 (180)
39 3jtf_A Magnesium and cobalt ef 99.7 3.4E-16 1.2E-20 134.1 10.5 123 6-200 3-126 (129)
40 3kpb_A Uncharacterized protein 99.7 7.3E-16 2.5E-20 129.5 12.4 118 9-200 2-120 (122)
41 2p9m_A Hypothetical protein MJ 99.7 2.4E-16 8.2E-21 135.3 9.5 125 209-413 6-137 (138)
42 2uv4_A 5'-AMP-activated protei 99.7 1.9E-16 6.6E-21 139.1 8.6 122 221-412 29-151 (152)
43 2d4z_A Chloride channel protei 99.6 6.8E-16 2.3E-20 149.2 12.8 52 358-412 195-246 (250)
44 3gby_A Uncharacterized protein 99.6 5.7E-16 1.9E-20 132.1 10.8 122 211-413 5-127 (128)
45 3ocm_A Putative membrane prote 99.6 3.9E-16 1.3E-20 141.8 10.3 122 210-415 35-160 (173)
46 3oi8_A Uncharacterized protein 99.6 4.1E-16 1.4E-20 138.2 10.2 116 209-407 36-155 (156)
47 2o16_A Acetoin utilization pro 99.6 6.8E-16 2.3E-20 137.2 11.5 130 211-412 5-135 (160)
48 3l2b_A Probable manganase-depe 99.6 2.6E-15 8.8E-20 142.4 16.2 52 358-411 191-243 (245)
49 3oco_A Hemolysin-like protein 99.6 5.3E-16 1.8E-20 136.7 10.6 125 5-200 17-143 (153)
50 2rih_A Conserved protein with 99.6 5.6E-16 1.9E-20 134.1 10.5 123 211-412 5-128 (141)
51 1y5h_A Hypothetical protein RV 99.6 1.5E-16 5.1E-21 136.0 6.8 124 209-412 6-131 (133)
52 3fhm_A Uncharacterized protein 99.6 8E-16 2.7E-20 137.2 11.8 129 4-200 20-150 (165)
53 3lhh_A CBS domain protein; str 99.6 1E-15 3.4E-20 138.0 12.6 126 4-200 38-164 (172)
54 1vr9_A CBS domain protein/ACT 99.6 1.3E-15 4.5E-20 142.5 13.3 115 218-415 18-133 (213)
55 1pbj_A Hypothetical protein; s 99.6 7.4E-16 2.5E-20 129.8 10.3 117 218-413 6-123 (125)
56 2rc3_A CBS domain; in SITU pro 99.6 6.6E-16 2.2E-20 132.5 9.9 122 212-413 7-132 (135)
57 1pvm_A Conserved hypothetical 99.6 6.1E-16 2.1E-20 140.6 10.1 124 211-412 9-133 (184)
58 3ctu_A CBS domain protein; str 99.6 8.4E-16 2.9E-20 135.2 10.6 136 5-205 12-147 (156)
59 1pbj_A Hypothetical protein; s 99.6 2.9E-15 9.8E-20 126.1 13.0 120 9-200 2-122 (125)
60 3nqr_A Magnesium and cobalt ef 99.6 5.6E-16 1.9E-20 132.2 8.7 122 8-199 3-125 (127)
61 2emq_A Hypothetical conserved 99.6 1.2E-15 4E-20 134.0 10.9 133 208-416 8-143 (157)
62 3lfr_A Putative metal ION tran 99.6 4.7E-16 1.6E-20 134.6 8.2 124 8-200 3-127 (136)
63 4gqw_A CBS domain-containing p 99.6 8.2E-16 2.8E-20 133.4 9.8 131 8-200 5-143 (152)
64 3ctu_A CBS domain protein; str 99.6 7.3E-16 2.5E-20 135.6 9.5 128 211-415 15-145 (156)
65 3fv6_A YQZB protein; CBS domai 99.6 2.3E-15 8E-20 133.3 12.7 132 4-201 13-145 (159)
66 3lqn_A CBS domain protein; csg 99.6 8E-16 2.7E-20 134.3 9.5 128 211-414 15-145 (150)
67 3kxr_A Magnesium transporter, 99.6 2.5E-15 8.4E-20 140.4 13.3 119 209-412 52-174 (205)
68 2p9m_A Hypothetical protein MJ 99.6 2.8E-15 9.5E-20 128.6 12.5 128 2-200 2-136 (138)
69 2rih_A Conserved protein with 99.6 4.7E-15 1.6E-19 128.3 13.9 102 8-135 5-109 (141)
70 1o50_A CBS domain-containing p 99.6 2.4E-15 8.3E-20 132.8 12.0 137 211-413 16-154 (157)
71 4fry_A Putative signal-transdu 99.6 1.1E-15 3.7E-20 134.7 9.6 125 211-415 7-138 (157)
72 2yzi_A Hypothetical protein PH 99.6 5.3E-15 1.8E-19 127.0 13.7 126 4-200 3-129 (138)
73 4fry_A Putative signal-transdu 99.6 3.6E-15 1.2E-19 131.3 12.5 125 8-201 7-136 (157)
74 2nyc_A Nuclear protein SNF4; b 99.6 4.3E-15 1.5E-19 127.9 12.6 133 4-200 4-141 (144)
75 2rc3_A CBS domain; in SITU pro 99.6 4.2E-15 1.4E-19 127.4 12.2 123 9-200 7-131 (135)
76 3l2b_A Probable manganase-depe 99.6 2E-15 6.9E-20 143.2 11.2 200 6-271 5-241 (245)
77 3gby_A Uncharacterized protein 99.6 2.4E-15 8.3E-20 128.2 10.0 122 7-200 4-126 (128)
78 2emq_A Hypothetical conserved 99.6 5.2E-15 1.8E-19 129.9 12.3 136 4-204 7-143 (157)
79 2j9l_A Chloride channel protei 99.6 2E-15 7E-20 135.8 9.8 150 210-415 10-168 (185)
80 1yav_A Hypothetical protein BS 99.6 1.4E-15 4.6E-20 134.5 8.4 134 206-415 9-145 (159)
81 3sl7_A CBS domain-containing p 99.6 1.7E-15 5.9E-20 135.5 9.1 134 8-203 4-159 (180)
82 1yav_A Hypothetical protein BS 99.6 5E-15 1.7E-19 130.9 11.7 133 5-202 11-144 (159)
83 1vr9_A CBS domain protein/ACT 99.6 2.9E-15 9.8E-20 140.1 10.5 156 9-251 14-172 (213)
84 2o16_A Acetoin utilization pro 99.6 7E-15 2.4E-19 130.6 12.4 129 7-200 4-135 (160)
85 1y5h_A Hypothetical protein RV 99.6 2E-15 6.9E-20 128.9 8.6 107 5-135 5-113 (133)
86 3k2v_A Putative D-arabinose 5- 99.6 4.7E-15 1.6E-19 129.8 10.4 105 9-135 29-134 (149)
87 2pfi_A Chloride channel protei 99.6 4.5E-15 1.5E-19 130.8 10.3 133 210-413 12-148 (164)
88 2uv4_A 5'-AMP-activated protei 99.6 5.4E-15 1.8E-19 129.9 10.7 118 18-199 29-150 (152)
89 3ocm_A Putative membrane prote 99.6 9E-15 3.1E-19 132.7 11.1 125 4-200 32-157 (173)
90 1o50_A CBS domain-containing p 99.6 4.3E-14 1.5E-18 124.7 14.8 130 5-200 13-153 (157)
91 3oi8_A Uncharacterized protein 99.5 3.5E-15 1.2E-19 132.2 6.4 108 4-136 34-142 (156)
92 1pvm_A Conserved hypothetical 99.5 2.1E-14 7.3E-19 130.3 11.6 106 7-135 8-114 (184)
93 2j9l_A Chloride channel protei 99.5 3.5E-14 1.2E-18 127.7 12.8 135 4-201 7-166 (185)
94 2pfi_A Chloride channel protei 99.5 4.4E-14 1.5E-18 124.4 12.8 136 5-202 10-149 (164)
95 2oux_A Magnesium transporter; 99.5 3.2E-14 1.1E-18 139.3 12.1 121 207-412 133-259 (286)
96 2yvy_A MGTE, Mg2+ transporter 99.5 5E-14 1.7E-18 136.9 12.4 119 210-413 134-258 (278)
97 3kxr_A Magnesium transporter, 99.5 1.4E-13 4.9E-18 128.4 12.0 122 4-201 50-175 (205)
98 2d4z_A Chloride channel protei 99.5 2.4E-13 8.1E-18 131.3 11.0 63 5-80 10-72 (250)
99 3pc3_A CG1753, isoform A; CBS, 99.4 1.1E-13 3.7E-18 146.6 9.3 138 209-426 382-524 (527)
100 3org_A CMCLC; transporter, tra 99.4 3.5E-14 1.2E-18 153.6 5.1 172 209-414 451-627 (632)
101 2zy9_A Mg2+ transporter MGTE; 99.4 8E-13 2.7E-17 138.4 12.6 118 210-412 154-277 (473)
102 3pc3_A CG1753, isoform A; CBS, 99.4 3.4E-13 1.2E-17 142.7 9.5 130 5-201 381-512 (527)
103 2oux_A Magnesium transporter; 99.4 1.1E-12 3.6E-17 128.4 11.3 120 5-200 134-259 (286)
104 3usb_A Inosine-5'-monophosphat 99.4 1.5E-12 5E-17 137.7 12.9 119 218-416 118-238 (511)
105 2yvy_A MGTE, Mg2+ transporter 99.4 2E-12 6.9E-17 125.5 11.2 121 4-200 131-257 (278)
106 1me8_A Inosine-5'-monophosphat 99.3 1.5E-13 5.2E-18 144.9 1.1 116 219-415 103-224 (503)
107 4af0_A Inosine-5'-monophosphat 99.3 1.6E-13 5.4E-18 144.0 1.2 121 219-420 144-266 (556)
108 1zfj_A Inosine monophosphate d 99.3 4.6E-12 1.6E-16 132.8 11.6 113 218-412 95-211 (491)
109 4fxs_A Inosine-5'-monophosphat 99.3 4.8E-13 1.6E-17 141.0 3.2 116 218-415 94-212 (496)
110 1vrd_A Inosine-5'-monophosphat 99.3 4.6E-13 1.6E-17 140.6 -0.0 114 218-413 100-216 (494)
111 4avf_A Inosine-5'-monophosphat 99.3 7.4E-13 2.5E-17 139.3 1.3 116 218-416 93-211 (490)
112 3ghd_A A cystathionine beta-sy 99.2 1.2E-11 4.1E-16 96.5 6.8 66 19-103 1-66 (70)
113 2zy9_A Mg2+ transporter MGTE; 99.2 3.5E-11 1.2E-15 126.0 11.5 121 4-200 151-277 (473)
114 3org_A CMCLC; transporter, tra 99.2 4.4E-12 1.5E-16 137.2 4.5 113 6-134 451-606 (632)
115 3usb_A Inosine-5'-monophosphat 99.2 1.2E-10 4E-15 123.2 14.0 161 9-250 108-276 (511)
116 1jcn_A Inosine monophosphate d 99.1 1.7E-12 5.7E-17 137.1 -2.8 135 190-413 96-234 (514)
117 1me8_A Inosine-5'-monophosphat 99.1 1.4E-11 4.7E-16 130.0 2.8 155 17-248 104-260 (503)
118 1zfj_A Inosine monophosphate d 99.1 6.8E-10 2.3E-14 116.2 15.1 118 10-199 92-210 (491)
119 1vrd_A Inosine-5'-monophosphat 99.0 9.9E-11 3.4E-15 122.8 3.2 117 10-199 97-214 (494)
120 2cu0_A Inosine-5'-monophosphat 99.0 4.2E-11 1.4E-15 125.6 0.0 110 218-412 98-208 (486)
121 4af0_A Inosine-5'-monophosphat 99.0 6.4E-11 2.2E-15 124.3 0.0 94 18-136 146-240 (556)
122 3ghd_A A cystathionine beta-sy 99.0 1.5E-09 5E-14 84.6 7.7 51 362-415 2-52 (70)
123 4avf_A Inosine-5'-monophosphat 98.9 9.7E-11 3.3E-15 123.2 -0.7 99 10-136 90-189 (490)
124 4fxs_A Inosine-5'-monophosphat 98.9 2.3E-09 8E-14 112.9 7.0 113 95-271 90-206 (496)
125 3fio_A A cystathionine beta-sy 98.8 1.2E-08 3.9E-13 77.5 6.8 66 19-103 1-66 (70)
126 3fio_A A cystathionine beta-sy 98.7 2.2E-08 7.4E-13 76.0 7.3 51 361-414 1-51 (70)
127 2cu0_A Inosine-5'-monophosphat 98.6 4.1E-09 1.4E-13 110.6 0.0 88 18-135 101-189 (486)
128 1jcn_A Inosine monophosphate d 98.6 2.2E-09 7.5E-14 113.3 -3.4 119 95-272 109-231 (514)
129 1tif_A IF3-N, translation init 65.5 7.7 0.00026 30.4 4.5 39 382-422 12-50 (78)
130 1svj_A Potassium-transporting 37.0 12 0.00042 32.7 1.6 35 371-408 121-155 (156)
No 1
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=100.00 E-value=3e-36 Score=296.66 Aligned_cols=282 Identities=17% Similarity=0.219 Sum_probs=218.3
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhc---
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAK--- 81 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~--- 81 (433)
|..++|+|+|..+.++++++.++|+.+|+++|.+++++++||||.+ .++++|++|..|++.++..
T Consensus 27 l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~------------~~~lvGilt~~Dl~~~l~~~~~ 94 (323)
T 3t4n_C 27 LNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK------------TSRFAGLLTTTDFINVIQYYFS 94 (323)
T ss_dssp HHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETT------------TTEEEEEECHHHHHHHHHHHHH
T ss_pred HHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCC------------CCeEEEEEEHHHHHHHHHHHHc
Confidence 4789999999988899999999999999999999999999999965 3699999999999997642
Q ss_pred -CCCcchHHhhcCCcchhcc------ccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccc
Q 013939 82 -SDCLEDQDKAMKTPVSQVI------VPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKW 153 (433)
Q Consensus 82 -~~~l~~~~~~l~~pV~~Im------~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~ 153 (433)
+............++.++| +. +++++.+++++.+|++.|. ++++++||.++++..
T Consensus 95 ~~~~~~~l~~~~~~~v~~i~~~~~~~~~---~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~-------------- 157 (323)
T 3t4n_C 95 NPDKFELVDKLQLDGLKDIERALGVDQL---DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET-------------- 157 (323)
T ss_dssp CGGGGGGGGGCBHHHHHHHHHHTTC-------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT--------------
T ss_pred CcchhHHHHHHHHHHHHHHHHHhCCCCC---CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC--------------
Confidence 1111111111113344444 43 4899999999999999999 899999998764310
Q ss_pred cccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccC-cCCCeEEEcCCCcH
Q 013939 154 LKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGV-INPNYSSIEASVPA 232 (433)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~i-m~~~vitv~~~~~v 232 (433)
+...++|+||+.|+++++..+... ......+++++++ |+++++++.+++++
T Consensus 158 ---------------------------~~~~l~Givt~~di~~~l~~~~~~-~~~~~~~v~~~~~~m~~~~~~v~~~~~~ 209 (323)
T 3t4n_C 158 ---------------------------HREIVVSVLTQYRILKFVALNCRE-THFLKIPIGDLNIITQDNMKSCQMTTPV 209 (323)
T ss_dssp ---------------------------CCEEEEEEEEHHHHHHHHHHHCGG-GGGCCSBGGGTTCSBCTTCCCBCTTSBH
T ss_pred ---------------------------CccceEEEecHHHHHHHHHhcCCc-hhhhhCcHHHcCCCCCCCcEEECCCCcH
Confidence 111379999999999999765433 3345567877543 56889999999999
Q ss_pred HHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccc
Q 013939 233 IEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLR 311 (433)
Q Consensus 233 ~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~ 311 (433)
.+|+++|.+ +++++||||+ +| +++|+||.+|+++... ...+.....++.+++..
T Consensus 210 ~~~~~~m~~~~~~~~pVvd~--~~--~~~Giit~~dl~~~~~-~~~~~~~~~~v~~~m~~-------------------- 264 (323)
T 3t4n_C 210 IDVIQMLTQGRVSSVPIIDE--NG--YLINVYEAYDVLGLIK-GGIYNDLSLSVGEALMR-------------------- 264 (323)
T ss_dssp HHHHHHHHHHTCSEEEEECT--TC--BEEEEEETTHHHHHHH-TTHHHHTTSBHHHHGGG--------------------
T ss_pred HHHHHHHHHcCCCEEEEECC--CC--eEEEEEeHHHHHHHHh-hchhhhccCCHHHHHhh--------------------
Confidence 999999999 9999999998 78 9999999999987641 11112223333333320
Q ss_pred cccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeC
Q 013939 312 ENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTED 391 (433)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~ 391 (433)
. .....++++|+++++|.+|+++|.++++|++||||+
T Consensus 265 --~-----------------------------------------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~ 301 (323)
T 3t4n_C 265 --R-----------------------------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD 301 (323)
T ss_dssp --S-----------------------------------------CTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECT
T ss_pred --c-----------------------------------------cccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECC
Confidence 0 001348899999999999999999999999999998
Q ss_pred CCCCeEEEEEeHHHHHHHHHhC
Q 013939 392 ESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 392 ~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+ |+++||||++||++++..+
T Consensus 302 ~--~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 302 V--GRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp T--SBEEEEEEHHHHHHHHHHC
T ss_pred C--CcEEEEEEHHHHHHHHHhc
Confidence 7 9999999999999999864
No 2
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=100.00 E-value=1.4e-34 Score=277.08 Aligned_cols=267 Identities=18% Similarity=0.261 Sum_probs=208.7
Q ss_pred hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC-----
Q 013939 9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD----- 83 (433)
Q Consensus 9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~----- 83 (433)
++++++. +++++++++++|+.+|+++|.+++++++||+|++ .++++|++|..||+.++....
T Consensus 4 ~v~~~i~-~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~------------~~~~~Givt~~di~~~~~~~~~~~~~ 70 (280)
T 3kh5_A 4 RVMKIAQ-NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAG------------NNKVVGIITSMDIVDFMGGGSKYNLI 70 (280)
T ss_dssp BGGGTSC-CSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTT------------TCBEEEEEEHHHHHHHTTTSGGGHHH
T ss_pred hHHHHhc-CCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECC------------CCeEEEEEEHHHHHHHhcccchhhhh
Confidence 3566653 4689999999999999999999999999999963 279999999999999875321
Q ss_pred ---CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccc
Q 013939 84 ---CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA 159 (433)
Q Consensus 84 ---~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~ 159 (433)
...+....++.+|+++|.++ ++++++++++.+|++.|. ++++++||.++++
T Consensus 71 ~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~---------------------- 125 (280)
T 3kh5_A 71 REKHERNFLAAINEPVREIMEEN---VITLKENADIDEAIETFLTKNVGGAPIVNDEN---------------------- 125 (280)
T ss_dssp HTTSTTCHHHHTTSBGGGTSBCS---CCCEETTCBHHHHHHHHHHTTCSEEEEECTTC----------------------
T ss_pred hhccccchhHHhhhhHHHhcCCC---CEEECCCCCHHHHHHHHHhCCCCEEEEEcCCC----------------------
Confidence 11112344578999999965 899999999999999999 7899999986432
Q ss_pred cCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhc
Q 013939 160 SNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKA 239 (433)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M 239 (433)
+.+|++|+.|+++++.+... ...++++ +|+++++++.+++++.+|++.|
T Consensus 126 ------------------------~~~Givt~~dl~~~~~~~~~-----~~~~v~~--~m~~~~~~v~~~~~l~~~~~~~ 174 (280)
T 3kh5_A 126 ------------------------QLISLITERDVIRALLDKID-----ENEVIDD--YITRDVIVATPGERLKDVARTM 174 (280)
T ss_dssp ------------------------BEEEEEEHHHHHHHHGGGSC-----TTCBSGG--GCBCSCCCBCTTCBHHHHHHHH
T ss_pred ------------------------EEEEEEEHHHHHHHHhhcCC-----CCCCHHH--HhCCCCeEECCCCcHHHHHHHH
Confidence 46899999999999865322 1235665 6889999999999999999999
Q ss_pred cc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCC
Q 013939 240 PG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNG 318 (433)
Q Consensus 240 ~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 318 (433)
.+ +++.+||++ +| +++|+||.+|++...... +.+..+..+++.. . ..
T Consensus 175 ~~~~~~~~~Vv~---~~--~~~Givt~~dl~~~~~~~--~~~~~~~~~~~~~-------------------~--~~---- 222 (280)
T 3kh5_A 175 VRNGFRRLPVVS---EG--RLVGIITSTDFIKLLGSD--WAFNHMQTGNVRE-------------------I--TN---- 222 (280)
T ss_dssp HHHTCSEEEEEE---TT--EEEEEEEHHHHHHHHTSH--HHHHHHHSCCTHH-------------------H--HH----
T ss_pred HHcCCCEEEEEE---CC--EEEEEEEHHHHHHHHhhh--hhhhhhcccchhh-------------------h--hC----
Confidence 99 999999994 68 999999999998764211 1111100000000 0 00
Q ss_pred CCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEE
Q 013939 319 VGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLV 398 (433)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lv 398 (433)
..+ + ..|+.++++|+++++|.+|+++|.++++|++||+|++ |+++
T Consensus 223 -----------~~v-----------------~-----~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~--g~~~ 267 (280)
T 3kh5_A 223 -----------VRM-----------------E-----EIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN--LRIK 267 (280)
T ss_dssp -----------CBH-----------------H-----HHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTT--CBEE
T ss_pred -----------CcH-----------------H-----HHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC--CeEE
Confidence 000 0 2357899999999999999999999999999999997 8999
Q ss_pred EEEeHHHHHHHHH
Q 013939 399 GVVGYADILVAVT 411 (433)
Q Consensus 399 GIVs~~DIL~~i~ 411 (433)
||||++||+++++
T Consensus 268 Givt~~dil~~la 280 (280)
T 3kh5_A 268 GIITEKDVLKYFA 280 (280)
T ss_dssp EEEEHHHHGGGGC
T ss_pred EEEeHHHHHHhhC
Confidence 9999999998763
No 3
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=100.00 E-value=3.4e-34 Score=283.18 Aligned_cols=300 Identities=15% Similarity=0.175 Sum_probs=217.0
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC-C
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS-D 83 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~-~ 83 (433)
|..++|+|+|...++++++++++|+.+|+++|.+++++++||+|.+ .++++|+|+..||+.++... .
T Consensus 19 l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~------------~~~~vGiv~~~Dl~~~~~~~~~ 86 (334)
T 2qrd_G 19 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE------------ANKFAGLLTMADFVNVIKYYYQ 86 (334)
T ss_dssp HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT------------TTEEEEEECHHHHHHHHHHHHH
T ss_pred HhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCC------------CCeEEEEEEHHHHHHHHHHHhh
Confidence 4559999999766789999999999999999999999999999964 27999999999999977421 0
Q ss_pred ---CcchHHhhcCCcch-------hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccc
Q 013939 84 ---CLEDQDKAMKTPVS-------QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGK 152 (433)
Q Consensus 84 ---~l~~~~~~l~~pV~-------~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~ 152 (433)
........-+.+++ ++|..+ ..++++.+++++.+|++.|. ++++++||.++.+. +
T Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~l~~im~~~-~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~-------------~ 152 (334)
T 2qrd_G 87 SSSFPEAIAEIDKFRLLGLREVERKIGAIP-PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGE-------------T 152 (334)
T ss_dssp HCSCGGGGGGGGSCBHHHHHHHHHHHTCSC-SSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETT-------------T
T ss_pred ccCCccHHHHHhhhchhhHHHHHHhhccCC-CceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCC-------------c
Confidence 00000011133333 346543 12389999999999999999 79999999865320 0
Q ss_pred ccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCccccc-CcCCCeEEEcCCCc
Q 013939 153 WLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLG-VINPNYSSIEASVP 231 (433)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~-im~~~vitv~~~~~ 231 (433)
+.+..+||||+.|+++++..+.... .+...+++++. +|.++++++.++++
T Consensus 153 ----------------------------~~~~~~Givt~~dl~~~~~~~~~~~-~~~~~~v~~l~~~m~~~~~~v~~~~~ 203 (334)
T 2qrd_G 153 ----------------------------GSEMIVSVLTQYRILKFISMNCKET-AMLRVPLNQMTIGTWSNLATASMETK 203 (334)
T ss_dssp ----------------------------TEEEEEEEEEHHHHHHHHHHHCGGG-GGCCCBGGGSSCSBCSSCCCBCTTSB
T ss_pred ----------------------------CccceEEEeeHHHHHHHHHhhccch-hhhhCcHHHhCCcccCCceEECCCCc
Confidence 0113689999999999997543221 22346677754 58899999999999
Q ss_pred HHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCccccccc
Q 013939 232 AIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTL 310 (433)
Q Consensus 232 v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~ 310 (433)
+.+|+++|.+ +++.+||+|+ +| +++|+||.+|++...... .......++.+++.
T Consensus 204 ~~~~~~~m~~~~~~~~~Vvd~--~~--~~~Giit~~dl~~~~~~~-~~~~~~~~v~~~m~-------------------- 258 (334)
T 2qrd_G 204 VYDVIKMLAEKNISAVPIVNS--EG--TLLNVYESVDVMHLIQDG-DYSNLDLSVGEALL-------------------- 258 (334)
T ss_dssp HHHHHHHHHHHTCSEEEEECT--TC--BEEEEEETHHHHHHHTTS-CGGGGGSBHHHHHT--------------------
T ss_pred HHHHHHHHHHcCCcEEEEEcC--CC--cEEEEEEHHHHHHHhhcc-ccccccCcHHHHHh--------------------
Confidence 9999999999 9999999997 78 999999999998653100 00000111111110
Q ss_pred ccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEe
Q 013939 311 RENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTE 390 (433)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD 390 (433)
... . ...++++|+++++|.+|+.+|.+++++++||||
T Consensus 259 -------------------~~~-----------------------~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd 295 (334)
T 2qrd_G 259 -------------------KRP-----------------------A-NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD 295 (334)
T ss_dssp -------------------TCC-----------------------T-TCCCCCEECTTCBHHHHHHHHHHSCCCEEEEEC
T ss_pred -------------------ccc-----------------------c-cCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEC
Confidence 000 0 015889999999999999999999999999999
Q ss_pred CCCCCeEEEEEeHHHHHHHHHhCCCCcCCCCCCcccccc
Q 013939 391 DESDDVLVGVVGYADILVAVTKQPAALTPANRTYEGFAT 429 (433)
Q Consensus 391 ~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~~~~~~~~~~ 429 (433)
++ |+++||||++||++++........+.......|.+
T Consensus 296 ~~--g~l~Giit~~dil~~~~~~~~~~~~~~~~~~~~~~ 332 (334)
T 2qrd_G 296 EN--LKLEGILSLADILNYIIYDKTTTPGVPEQTDNFES 332 (334)
T ss_dssp TT--CBEEEEEEHHHHHHHHHSCCC---------CCCCC
T ss_pred CC--CeEEEEEeHHHHHHHHHhccccCCCCCccccchhh
Confidence 87 99999999999999999887765554455555543
No 4
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=100.00 E-value=8.3e-34 Score=275.87 Aligned_cols=265 Identities=15% Similarity=0.180 Sum_probs=214.0
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.+...+|+|+|. ++++++++++|+.+|+++|.+++++++||+| + +++|++|..||+.++....
T Consensus 16 ~~~~~~V~dim~--~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~--------------~l~GivT~~Di~~~~~~~~ 78 (296)
T 3ddj_A 16 YFQGMNIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN-E--------------KIEGLLTTRDLLSTVESYC 78 (296)
T ss_dssp TTCCSSGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES-S--------------SEEEEEEHHHHHGGGTTCC
T ss_pred hhcccCHHHhcc--CCCcEECCCccHHHHHHHHHHCCCceEEEEC-C--------------eEEEEEeHHHHHHHhcccc
Confidence 345678999996 5789999999999999999999999999998 3 7999999999999886431
Q ss_pred ----CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccc
Q 013939 84 ----CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMD 158 (433)
Q Consensus 84 ----~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~ 158 (433)
...+..+..+.+|+++|.++ ++++.+++++.+|++.|. ++++++||.+++
T Consensus 79 ~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~---------------------- 133 (296)
T 3ddj_A 79 KDSCSQGDLYHISTTPIIDYMTPN---PVTVYNTSDEFTAINIMVTRNFGSLPVVDIN---------------------- 133 (296)
T ss_dssp ---CCHHHHHHHHTSBGGGTSEES---CCCEETTSCHHHHHHHHHHHTCSEEEEECTT----------------------
T ss_pred cccccchhhHHHhcccHHHhccCC---CEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------
Confidence 11122334578999999865 899999999999999999 899999998543
Q ss_pred ccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHh
Q 013939 159 ASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLK 238 (433)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~ 238 (433)
++++|+||..|+++++.+. ....++++ +|+++++++.+++++.+|+++
T Consensus 134 ------------------------~~lvGivt~~dl~~~~~~~------~~~~~v~~--~m~~~~~~v~~~~~l~~~~~~ 181 (296)
T 3ddj_A 134 ------------------------DKPVGIVTEREFLLLYKDL------DEIFPVKV--FMSTKVQTIYKEVRLDQAVKL 181 (296)
T ss_dssp ------------------------SCEEEEEEHHHHGGGGGGS------CCCCBHHH--HSBCSCCCEETTSBHHHHHHH
T ss_pred ------------------------CcEEEEEeHHHHHHhhhcc------cccccHHH--hhcCCCeEECCCCCHHHHHHH
Confidence 2468999999999877432 12346666 688999999999999999999
Q ss_pred ccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccC
Q 013939 239 APG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVN 317 (433)
Q Consensus 239 M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 317 (433)
|.+ +++.+||+|+ +| +++|+||.+|++.... ..+..+....+ ..
T Consensus 182 m~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~----~~~~~~~~~~~------------------------~~--- 226 (296)
T 3ddj_A 182 MLRRGFRRLPVIDD--DN--KVVGIVTVVNAIKQLA----KAVDKLDPDYF------------------------YG--- 226 (296)
T ss_dssp HHHHTCSEEEEECT--TS--CEEEEEEHHHHHHHHH----HHHHHTCTHHH------------------------HT---
T ss_pred HHHcCCCEEEEEcC--CC--EEEEEEEHHHHHHHHH----HHHhhcChhhh------------------------cC---
Confidence 999 9999999997 78 9999999999987641 11111000000 00
Q ss_pred CCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeE
Q 013939 318 GVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVL 397 (433)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~l 397 (433)
..+ + ..|..++++|+++++|.+|+.+|.+++++++||||++ |++
T Consensus 227 ------------~~v-----------------~-----~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~--g~~ 270 (296)
T 3ddj_A 227 ------------KVV-----------------K-----DVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKD--NTI 270 (296)
T ss_dssp ------------CBH-----------------H-----HHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTT--SCE
T ss_pred ------------cCH-----------------H-----HHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC--CeE
Confidence 000 0 2257799999999999999999999999999999987 999
Q ss_pred EEEEeHHHHHHHHHhC
Q 013939 398 VGVVGYADILVAVTKQ 413 (433)
Q Consensus 398 vGIVs~~DIL~~i~~~ 413 (433)
+||||++||++++..+
T Consensus 271 ~Giit~~Dil~~l~~~ 286 (296)
T 3ddj_A 271 RGIITERDLLIALHHI 286 (296)
T ss_dssp EEEEEHHHHHHHHHHH
T ss_pred EEEEcHHHHHHHHHHH
Confidence 9999999999999864
No 5
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=100.00 E-value=8e-34 Score=280.48 Aligned_cols=280 Identities=20% Similarity=0.274 Sum_probs=217.5
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
+|...+|+|+|...++++++++++|+.+|+++|.+++++++||+|.+ .++++|+|+..|++.++....
T Consensus 31 ~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~------------~~~~vGivt~~Dll~~l~~~~ 98 (330)
T 2v8q_E 31 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK------------KQSFVGMLTITDFINILHRYY 98 (330)
T ss_dssp HHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT------------TTEEEEEEEHHHHHHHHHHHH
T ss_pred HHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC------------CCeEEEEEEHHHHHHHHHHHH
Confidence 45667899999656889999999999999999999999999999964 268999999999998765310
Q ss_pred --------Ccch-HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccc
Q 013939 84 --------CLED-QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKW 153 (433)
Q Consensus 84 --------~l~~-~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~ 153 (433)
.+.. .-+.+..+++++|..+ ++++.+++++.+|++.|. ++++++||.+++.
T Consensus 99 ~~~~~~~~~l~~~~~~~~~~~~~~im~~~---~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~---------------- 159 (330)
T 2v8q_E 99 KSALVQIYELEEHKIETWREVYLQDSFKP---LVCISPNASLFDAVSSLIRNKIHRLPVIDPES---------------- 159 (330)
T ss_dssp HHHTTTCCCGGGCBHHHHHHHHSSSSCCC---CCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT----------------
T ss_pred hccccchhHHhhccHHHHHHHHhhcccCC---ceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC----------------
Confidence 0000 0011123455678754 999999999999999999 8999999986411
Q ss_pred cccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCC--CCCCCCCCcccccCcC-CCeEEEcCCC
Q 013939 154 LKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGA--LAPLPLSSISSLGVIN-PNYSSIEASV 230 (433)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~--l~~l~~~tV~~L~im~-~~vitv~~~~ 230 (433)
++.+|+||+.|+++++.++... ...+..++++++.+|+ ++++++.+++
T Consensus 160 -----------------------------~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~ 210 (330)
T 2v8q_E 160 -----------------------------GNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTT 210 (330)
T ss_dssp -----------------------------CCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTC
T ss_pred -----------------------------CcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCC
Confidence 2468999999999999764332 2334456777777787 7899999999
Q ss_pred cHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccc
Q 013939 231 PAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANST 309 (433)
Q Consensus 231 ~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~ 309 (433)
++.+|++.|.+ +++.+||+|+ +| +++|+||.+|++....... +.....++.+++.
T Consensus 211 ~l~~~~~~m~~~~~~~~~Vvd~--~~--~l~Giit~~dl~~~~~~~~-~~~~~~~v~~~~~------------------- 266 (330)
T 2v8q_E 211 PVYVALGIFVQHRVSALPVVDE--KG--RVVDIYSKFDVINLAAEKT-YNNLDVSVTKALQ------------------- 266 (330)
T ss_dssp BHHHHHHHHHHHCCSEEEEECT--TS--BEEEEEEGGGTGGGGGSSC-CCCCSSBHHHHGG-------------------
T ss_pred CHHHHHHHHHHcCCCeEEEECC--CC--cEEEEEEHHHHHHHHhccc-cccccCcHHHHHh-------------------
Confidence 99999999999 9999999997 78 9999999999987541000 0000001111100
Q ss_pred cccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEE
Q 013939 310 LRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVT 389 (433)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VV 389 (433)
. + ..|+.++++|+++++|.+++.+|.+++++++|||
T Consensus 267 -------~------------~-------------------------~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv 302 (330)
T 2v8q_E 267 -------H------------R-------------------------SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVV 302 (330)
T ss_dssp -------G------------C-------------------------CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred -------c------------c-------------------------ccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEE
Confidence 0 0 1146799999999999999999999999999999
Q ss_pred eCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 390 EDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 390 D~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
|++ |+++||||+.||++++...
T Consensus 303 d~~--g~l~Giit~~Dil~~~~~~ 324 (330)
T 2v8q_E 303 DEH--DVVKGIVSLSDILQALVLT 324 (330)
T ss_dssp CTT--SBEEEEEEHHHHHHHHHSS
T ss_pred cCC--CcEEEEEeHHHHHHHHHhh
Confidence 987 9999999999999999865
No 6
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=100.00 E-value=3.7e-33 Score=268.36 Aligned_cols=275 Identities=15% Similarity=0.155 Sum_probs=185.1
Q ss_pred hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939 9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ 88 (433)
Q Consensus 9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~ 88 (433)
+|+|+|. ++++++++++|+.+|+++|.++++.++||+|.+ ++++|+++..||+..+.
T Consensus 2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-------------~~~~Giv~~~dl~~~~~-------- 58 (282)
T 2yzq_A 2 RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-------------GKLVGIISVKRILVNPD-------- 58 (282)
T ss_dssp BHHHHSE--ESCCCEESSCC------------CCEEEEECTT-------------CCEEEEEESSCC-------------
T ss_pred chHHhcc--CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-------------CcEEEEEEHHHHHhhhc--------
Confidence 5789886 678999999999999999999999999999863 79999999999986532
Q ss_pred HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939 89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL 167 (433)
Q Consensus 89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 167 (433)
+.+|+++|... ++++++++++.+|++.|. ++++++||.++++
T Consensus 59 ----~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~------------------------------ 101 (282)
T 2yzq_A 59 ----EEQLAMLVKRD---VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG------------------------------ 101 (282)
T ss_dssp ---------CCCBSC---CCEEETTSBHHHHHHHHHHHTCSEEEEECTTS------------------------------
T ss_pred ----cCCHHHHcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCC------------------------------
Confidence 36899999864 889999999999999999 7999999986432
Q ss_pred ccccCCCCCCCcCCCCCeEEEeeHHHHHH-HHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCe
Q 013939 168 IANANRPSSSSTTSVRDKFCCLSREDVIR-FLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSA 245 (433)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~-~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isa 245 (433)
+.+|+||+.|+++ ++.+. .. ....++++ +|+++++++.+++++.+|++.|.+ ++++
T Consensus 102 ----------------~~~Giit~~di~~~~~~~~-~~---~~~~~v~~--~m~~~~~~v~~~~~l~~~~~~~~~~~~~~ 159 (282)
T 2yzq_A 102 ----------------KPVGILTVGDIIRRYFAKS-EK---YKGVEIEP--YYQRYVSIVWEGTPLKAALKALLLSNSMA 159 (282)
T ss_dssp ----------------CEEEEEEHHHHHHHTTTTC-SG---GGGCBSTT--TSBSCCCCEETTSBHHHHHHHHHTCSSSE
T ss_pred ----------------EEEEEEEHHHHHHHHHhcc-CC---cccCcHHH--HhCCCCEEECCCCCHHHHHHHHHHcCCcE
Confidence 4689999999999 77532 11 12345554 688899999999999999999999 8999
Q ss_pred eEEecCCCCCcceEEeecchhhhhhcchhHHHHH--HhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCC
Q 013939 246 IAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWA--LANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTR 323 (433)
Q Consensus 246 vpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~--~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 323 (433)
+||+|+ +| +++|+||.+|++.......... .+.+. ..+ .++. ...+..+.. ...
T Consensus 160 l~Vvd~--~~--~~~Giit~~dl~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~~~~--------~~~--------- 215 (282)
T 2yzq_A 160 LPVVDS--EG--NLVGIVDETDLLRDSEIVRIMKSTELAAS-SEE-EWIL-ESHPTLLFE--------KFE--------- 215 (282)
T ss_dssp EEEECT--TS--CEEEEEEGGGGGGCGGGCC-------------------------------------------------
T ss_pred EEEEcC--CC--eEEEEEEHHHHhhhhhhhhhhccchhhhh-hhh-hhhc-ccchHHHHh--------Hhh---------
Confidence 999997 78 9999999999984321000000 00000 000 0000 000000000 000
Q ss_pred CccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeH
Q 013939 324 PRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGY 403 (433)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~ 403 (433)
.......+ + ..|+.++++|+|++++.+|+++|.+++++++||||++ |+++||||+
T Consensus 216 -~~~~~~~v-----------------~-----~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~lvGiit~ 270 (282)
T 2yzq_A 216 -LQLPNKPV-----------------A-----EIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGE--GDLIGLIRD 270 (282)
T ss_dssp ----CCCBG-----------------G-----GTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETT--TEEEEEEEH
T ss_pred -hhhccCCH-----------------H-----HhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCC--CCEEEEEeH
Confidence 00000001 1 3468899999999999999999999999999999987 899999999
Q ss_pred HHHHHHHHhCC
Q 013939 404 ADILVAVTKQP 414 (433)
Q Consensus 404 ~DIL~~i~~~~ 414 (433)
+||++++.+.+
T Consensus 271 ~Dil~~~~~~~ 281 (282)
T 2yzq_A 271 FDLLKVLVKSK 281 (282)
T ss_dssp HHHGGGGCC--
T ss_pred HHHHHHHHhhc
Confidence 99999887654
No 7
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.89 E-value=3.5e-23 Score=200.87 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=153.5
Q ss_pred cCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccc
Q 013939 92 MKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIAN 170 (433)
Q Consensus 92 l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 170 (433)
...+|+++|..+ ++++++++++.+|++.|. ++++++||.+ +
T Consensus 18 ~~~~V~dim~~~---~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~---------------------------------- 59 (296)
T 3ddj_A 18 QGMNIETLMIKN---PPILSKEDRLGSAFKKINEGGIGRIIVAN-E---------------------------------- 59 (296)
T ss_dssp CCSSGGGTCEES---CCEECTTSBHHHHHHHTTGGGCCEEEEES-S----------------------------------
T ss_pred cccCHHHhccCC---CcEECCCccHHHHHHHHHHCCCceEEEEC-C----------------------------------
Confidence 458899999965 999999999999999999 7899999976 2
Q ss_pred cCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC------CCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CC
Q 013939 171 ANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG------ALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DP 243 (433)
Q Consensus 171 ~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~------~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~i 243 (433)
+++||+|+.|+++++..... .+......++++ +|+++++++.+++++.+|+++|.+ ++
T Consensus 60 -------------~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~--im~~~~~~v~~~~~~~~a~~~m~~~~~ 124 (296)
T 3ddj_A 60 -------------KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIID--YMTPNPVTVYNTSDEFTAINIMVTRNF 124 (296)
T ss_dssp -------------SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGG--TSEESCCCEETTSCHHHHHHHHHHHTC
T ss_pred -------------eEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHH--hccCCCEEEcCCCCHHHHHHHHHHcCC
Confidence 35899999999998743211 011122456776 699999999999999999999999 99
Q ss_pred CeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCC
Q 013939 244 SAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTR 323 (433)
Q Consensus 244 savpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 323 (433)
+++||+|+ +| +++|++|.+|++..... . . ..
T Consensus 125 ~~lpVvd~--~~--~lvGivt~~dl~~~~~~---------------~----~-----------------~~--------- 155 (296)
T 3ddj_A 125 GSLPVVDI--ND--KPVGIVTEREFLLLYKD---------------L----D-----------------EI--------- 155 (296)
T ss_dssp SEEEEECT--TS--CEEEEEEHHHHGGGGGG---------------S----C-----------------CC---------
T ss_pred CEEEEEcC--CC--cEEEEEeHHHHHHhhhc---------------c----c-----------------cc---------
Confidence 99999997 78 99999999999865300 0 0 00
Q ss_pred CccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeH
Q 013939 324 PRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGY 403 (433)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~ 403 (433)
..+ + ..|..++++|.+++++.+++.+|.+++++++||+|++ |+++|+||.
T Consensus 156 ------~~v-----------------~-----~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~--~~~~Givt~ 205 (296)
T 3ddj_A 156 ------FPV-----------------K-----VFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD--NKVVGIVTV 205 (296)
T ss_dssp ------CBH-----------------H-----HHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEH
T ss_pred ------ccH-----------------H-----HhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC--CEEEEEEEH
Confidence 000 0 2257789999999999999999999999999999987 999999999
Q ss_pred HHHHHHHH
Q 013939 404 ADILVAVT 411 (433)
Q Consensus 404 ~DIL~~i~ 411 (433)
.||++++.
T Consensus 206 ~dl~~~~~ 213 (296)
T 3ddj_A 206 VNAIKQLA 213 (296)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 8
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.88 E-value=1.3e-22 Score=193.78 Aligned_cols=187 Identities=17% Similarity=0.242 Sum_probs=155.9
Q ss_pred chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939 7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE 86 (433)
Q Consensus 7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~ 86 (433)
..+++|+|. ++++++++++++.+|++.|.+++++++||+|.. ++++|++|..|+++++.....
T Consensus 83 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~~-- 145 (280)
T 3kh5_A 83 NEPVREIME--ENVITLKENADIDEAIETFLTKNVGGAPIVNDE-------------NQLISLITERDVIRALLDKID-- 145 (280)
T ss_dssp TSBGGGTSB--CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-------------CBEEEEEEHHHHHHHHGGGSC--
T ss_pred hhhHHHhcC--CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-------------CEEEEEEEHHHHHHHHhhcCC--
Confidence 457888886 578999999999999999999999999999863 799999999999998764311
Q ss_pred hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccc
Q 013939 87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSN 165 (433)
Q Consensus 87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 165 (433)
...+|+++|..+ ++++++++++.+|++.|. ++++++||. +++
T Consensus 146 -----~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~---------------------------- 188 (280)
T 3kh5_A 146 -----ENEVIDDYITRD---VIVATPGERLKDVARTMVRNGFRRLPVV-SEG---------------------------- 188 (280)
T ss_dssp -----TTCBSGGGCBCS---CCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETT----------------------------
T ss_pred -----CCCCHHHHhCCC---CeEECCCCcHHHHHHHHHHcCCCEEEEE-ECC----------------------------
Confidence 135899999865 899999999999999999 799999998 322
Q ss_pred ccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHcc-------CCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHh
Q 013939 166 NLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCL-------GALAPLPLSSISSLGVINPNYSSIEASVPAIEATLK 238 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~-------~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~ 238 (433)
+.+|+||..|+++++.+.. +........++++ +|+++++++.+++++.+|+++
T Consensus 189 ------------------~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~m~~~~~~v~~~~~l~~a~~~ 248 (280)
T 3kh5_A 189 ------------------RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEE--IMKRDVITAKEGDKLKKIAEI 248 (280)
T ss_dssp ------------------EEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHH--HSBSSCCCBCTTCBHHHHHHH
T ss_pred ------------------EEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHH--HhcCCCEEECCCCCHHHHHHH
Confidence 4589999999999985321 1111113345655 688999999999999999999
Q ss_pred ccc-CCCeeEEecCCCCCcceEEeecchhhhhhc
Q 013939 239 APG-DPSAIAVLEPTSEDQYKIIGEISASKLWKC 271 (433)
Q Consensus 239 M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~ 271 (433)
|.+ ++..+||||+ +| +++|+||.+|+++.
T Consensus 249 m~~~~~~~l~Vvd~--~g--~~~Givt~~dil~~ 278 (280)
T 3kh5_A 249 MVTNDIGALPVVDE--NL--RIKGIITEKDVLKY 278 (280)
T ss_dssp HHHHTCCEEEEECT--TC--BEEEEEEHHHHGGG
T ss_pred HHHCCCCEEEEECC--CC--eEEEEEeHHHHHHh
Confidence 999 9999999998 78 99999999999865
No 9
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.86 E-value=1e-21 Score=188.44 Aligned_cols=190 Identities=22% Similarity=0.218 Sum_probs=149.5
Q ss_pred chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHH-HhhcCCCc
Q 013939 7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVA-FLAKSDCL 85 (433)
Q Consensus 7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~-~l~~~~~l 85 (433)
..+++|++. ++++++++++++.+|++.|.++++..+||+|.+ ++++|++|..|+++ ++.++.
T Consensus 59 ~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Giit~~di~~~~~~~~~-- 121 (282)
T 2yzq_A 59 EEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-------------GKPVGILTVGDIIRRYFAKSE-- 121 (282)
T ss_dssp -----CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHTTTTCS--
T ss_pred cCCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CEEEEEEEHHHHHHHHHhccC--
Confidence 456778775 567999999999999999999999999999963 78999999999999 765421
Q ss_pred chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939 86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS 164 (433)
Q Consensus 86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 164 (433)
...+.+|+++|..+ ++++++++++.+|++.|. ++++++||+++++
T Consensus 122 ----~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~--------------------------- 167 (282)
T 2yzq_A 122 ----KYKGVEIEPYYQRY---VSIVWEGTPLKAALKALLLSNSMALPVVDSEG--------------------------- 167 (282)
T ss_dssp ----GGGGCBSTTTSBSC---CCCEETTSBHHHHHHHHHTCSSSEEEEECTTS---------------------------
T ss_pred ----CcccCcHHHHhCCC---CEEECCCCCHHHHHHHHHHcCCcEEEEEcCCC---------------------------
Confidence 11257899999754 899999999999999999 7899999986432
Q ss_pred cccccccCCCCCCCcCCCCCeEEEeeHHHHH------HHHHHcc----C------------CC----CCCCCCCcccccC
Q 013939 165 NNLIANANRPSSSSTTSVRDKFCCLSREDVI------RFLIGCL----G------------AL----APLPLSSISSLGV 218 (433)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi------~~l~~~~----~------------~l----~~l~~~tV~~L~i 218 (433)
+++|+||..|++ +++..+. + .+ ......++++ +
T Consensus 168 -------------------~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--i 226 (282)
T 2yzq_A 168 -------------------NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE--I 226 (282)
T ss_dssp -------------------CEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGG--T
T ss_pred -------------------eEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHH--h
Confidence 468999999999 6663100 0 00 1223556765 7
Q ss_pred cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcc
Q 013939 219 INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCD 272 (433)
Q Consensus 219 m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~ 272 (433)
|+++++++.+++++.+|+++|.+ ++..+||||+ +| +++|+||.+|+++..
T Consensus 227 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~--~lvGiit~~Dil~~~ 277 (282)
T 2yzq_A 227 MTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG--EG--DLIGLIRDFDLLKVL 277 (282)
T ss_dssp CBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET--TT--EEEEEEEHHHHGGGG
T ss_pred cCCCCceeCCCCCHHHHHHHHHHcCcceeEEECC--CC--CEEEEEeHHHHHHHH
Confidence 99999999999999999999999 9999999997 78 999999999998753
No 10
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.86 E-value=2e-21 Score=190.77 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=154.6
Q ss_pred hhHhhhhc----CCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 8 HVVGDLTV----GKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 8 ~~v~DL~~----~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
..+.+++. ..++++++++++++.+|++.|.+++++++||+|.++.. ...+++|++|..|++.++....
T Consensus 108 ~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~--------~~~~l~Givt~~di~~~l~~~~ 179 (323)
T 3t4n_C 108 DGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET--------HREIVVSVLTQYRILKFVALNC 179 (323)
T ss_dssp HHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT--------CCEEEEEEEEHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC--------CccceEEEecHHHHHHHHHhcC
Confidence 34555552 24788999999999999999999999999999964210 0014999999999999986431
Q ss_pred CcchHHhhcCCcchhc---cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccc
Q 013939 84 CLEDQDKAMKTPVSQV---IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA 159 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~I---m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~ 159 (433)
.. ....+.+|+++ |..+ ++++.+++++.+|++.|. ++++++||+++++
T Consensus 180 ~~---~~~~~~~v~~~~~~m~~~---~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~---------------------- 231 (323)
T 3t4n_C 180 RE---THFLKIPIGDLNIITQDN---MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG---------------------- 231 (323)
T ss_dssp GG---GGGCCSBGGGTTCSBCTT---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC----------------------
T ss_pred Cc---hhhhhCcHHHcCCCCCCC---cEEECCCCcHHHHHHHHHHcCCCEEEEECCCC----------------------
Confidence 11 23456899999 7654 999999999999999999 8999999986432
Q ss_pred cCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCC------CeEEEcCCCcHH
Q 013939 160 SNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINP------NYSSIEASVPAI 233 (433)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~------~vitv~~~~~v~ 233 (433)
+++|+||..|+++++.+... .....++++ +|++ +++++.+++++.
T Consensus 232 ------------------------~~~Giit~~dl~~~~~~~~~---~~~~~~v~~--~m~~~~~~~~~~~~v~~~~~l~ 282 (323)
T 3t4n_C 232 ------------------------YLINVYEAYDVLGLIKGGIY---NDLSLSVGE--ALMRRSDDFEGVYTCTKNDKLS 282 (323)
T ss_dssp ------------------------BEEEEEETTHHHHHHHTTHH---HHTTSBHHH--HGGGSCTTCCCCEEECTTCBHH
T ss_pred ------------------------eEEEEEeHHHHHHHHhhchh---hhccCCHHH--HHhhccccCCCCEEECCCCCHH
Confidence 46899999999999864221 012345665 5776 799999999999
Q ss_pred HHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcc
Q 013939 234 EATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCD 272 (433)
Q Consensus 234 ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~ 272 (433)
+|+++|.+ ++..+||||+ +| +++|+||.+|+++..
T Consensus 283 ~~~~~m~~~~~~~l~Vvd~--~~--~l~Giit~~Dil~~l 318 (323)
T 3t4n_C 283 TIMDNIRKARVHRFFVVDD--VG--RLVGVLTLSDILKYI 318 (323)
T ss_dssp HHHHHHHHSCCCEEEEECT--TS--BEEEEEEHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEECC--CC--cEEEEEEHHHHHHHH
Confidence 99999999 9999999997 78 999999999998754
No 11
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.84 E-value=5.1e-21 Score=172.08 Aligned_cols=151 Identities=15% Similarity=0.201 Sum_probs=105.4
Q ss_pred CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939 211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV 289 (433)
Q Consensus 211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~ 289 (433)
.+|++ +|+++++++.+++++.+|+++|.+ +++++||||+ +| +++|+||.+|+++............ +.
T Consensus 18 ~~V~d--iM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~--~g--~lvGiit~~Dll~~~~~~~~~~~~~-----~~ 86 (170)
T 4esy_A 18 VPIRD--ILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ--NG--HLVGIITESDFLRGSIPFWIYEASE-----IL 86 (170)
T ss_dssp SBGGG--GCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT--TS--CEEEEEEGGGGGGGTCCTTHHHHHH-----HH
T ss_pred CCHHH--hcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC--Cc--cEEEEEEHHHHHHHHhhccccchhh-----hh
Confidence 35665 799999999999999999999999 9999999998 88 9999999999987642111110000 00
Q ss_pred hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939 290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~ 369 (433)
. .. .+ . .....+.+.. .... ++ ..|+++++||+|++
T Consensus 87 ~---~~-~~----~-~~~~~~~~~~---------------~~~~---------------v~-----~im~~~~~tv~~~~ 122 (170)
T 4esy_A 87 S---RA-IP----A-PEVEHLFETG---------------RKLT---------------AS-----AVMTQPVVTAAPED 122 (170)
T ss_dssp T---TT-SC----H-HHHHHHHHHH---------------TTCB---------------HH-----HHCBCCSCCBCTTS
T ss_pred h---hc-cc----h-hhHHhhhccc---------------cccc---------------hh-----hhcccCcccCCcch
Confidence 0 00 00 0 0000000000 0000 00 34789999999999
Q ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCC
Q 013939 370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTP 419 (433)
Q Consensus 370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~ 419 (433)
+|.+|+.+|.++++||+||+|+ |+++||||++||++++..+....-|
T Consensus 123 ~l~~a~~~m~~~~~~~lpVvd~---g~lvGivt~~Dil~~l~~~~~~~dp 169 (170)
T 4esy_A 123 SVGSIADQMRRHGIHRIPVVQD---GVPVGIVTRRDLLKLLLLEESPVDP 169 (170)
T ss_dssp BHHHHHHHHHHTTCSEEEEEET---TEEEEEEEHHHHTTTSCCC------
T ss_pred hHHHHHHHHHHcCCcEEEEEEC---CEEEEEEEHHHHHHHHHhccCCCCC
Confidence 9999999999999999999995 8999999999999999887654433
No 12
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.82 E-value=5.1e-20 Score=181.49 Aligned_cols=189 Identities=14% Similarity=0.038 Sum_probs=148.8
Q ss_pred CCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcc
Q 013939 17 KPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPV 96 (433)
Q Consensus 17 k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV 96 (433)
.++++++++++++.+|++.|.++++..+||+|.+ .++++|+||..||+.++............+..++
T Consensus 125 ~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~------------~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v 192 (330)
T 2v8q_E 125 FKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPE------------SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSL 192 (330)
T ss_dssp CCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTT------------TCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBH
T ss_pred cCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCC------------CCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCH
Confidence 4778999999999999999999999999999962 1789999999999998864211000122345678
Q ss_pred hhc--cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCC
Q 013939 97 SQV--IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANR 173 (433)
Q Consensus 97 ~~I--m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 173 (433)
+++ |.. .+++++.+++++.+|++.|. ++++++||+++++
T Consensus 193 ~~~~v~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~------------------------------------ 234 (330)
T 2v8q_E 193 EELQIGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG------------------------------------ 234 (330)
T ss_dssp HHHTCSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTS------------------------------------
T ss_pred HHhcccCc--CCceEECCCCCHHHHHHHHHHcCCCeEEEECCCC------------------------------------
Confidence 776 541 24899999999999999999 7899999986432
Q ss_pred CCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccc----cCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEE
Q 013939 174 PSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSL----GVINPNYSSIEASVPAIEATLKAPG-DPSAIAV 248 (433)
Q Consensus 174 ~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L----~im~~~vitv~~~~~v~ea~~~M~~-~isavpV 248 (433)
+++|+||..|+++++.+.. +. ....+++++ ..|+++++++.+++++.+|+++|.+ ++..+||
T Consensus 235 ----------~l~Giit~~dl~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V 301 (330)
T 2v8q_E 235 ----------RVVDIYSKFDVINLAAEKT--YN-NLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVV 301 (330)
T ss_dssp ----------BEEEEEEGGGTGGGGGSSC--CC-CCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEE
T ss_pred ----------cEEEEEEHHHHHHHHhccc--cc-cccCcHHHHHhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEE
Confidence 4689999999999775321 11 113455552 1235889999999999999999999 9999999
Q ss_pred ecCCCCCcceEEeecchhhhhhcc
Q 013939 249 LEPTSEDQYKIIGEISASKLWKCD 272 (433)
Q Consensus 249 Vd~~~~g~~klvGiIS~~DL~~~~ 272 (433)
||+ +| +++|+||.+|+.+..
T Consensus 302 vd~--~g--~l~Giit~~Dil~~~ 321 (330)
T 2v8q_E 302 VDE--HD--VVKGIVSLSDILQAL 321 (330)
T ss_dssp ECT--TS--BEEEEEEHHHHHHHH
T ss_pred EcC--CC--cEEEEEeHHHHHHHH
Confidence 998 78 999999999998653
No 13
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.81 E-value=2.5e-19 Score=176.58 Aligned_cols=186 Identities=15% Similarity=0.154 Sum_probs=149.4
Q ss_pred hcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCe----EEEEEeHHHHHHHhhcCCCcchHH
Q 013939 14 TVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQR----FVGILNSFDIVAFLAKSDCLEDQD 89 (433)
Q Consensus 14 ~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~----~VGivt~~DIl~~l~~~~~l~~~~ 89 (433)
|....+++++++++++.+|++.|.++++..+||+|.. +++ ++|++|..||+.++.... . ..
T Consensus 113 m~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~------------~~~~~~~~~Givt~~dl~~~~~~~~--~-~~ 177 (334)
T 2qrd_G 113 GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD------------GETGSEMIVSVLTQYRILKFISMNC--K-ET 177 (334)
T ss_dssp TCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE------------TTTTEEEEEEEEEHHHHHHHHHHHC--G-GG
T ss_pred ccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC------------CCcCccceEEEeeHHHHHHHHHhhc--c-ch
Confidence 3333445999999999999999999999999999864 133 999999999999886421 1 01
Q ss_pred hhcCCcchhc---cccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccc
Q 013939 90 KAMKTPVSQV---IVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSN 165 (433)
Q Consensus 90 ~~l~~pV~~I---m~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 165 (433)
...+.+|+++ |..+ ++++++++++.+|++.|. ++++++||+++++
T Consensus 178 ~~~~~~v~~l~~~m~~~---~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~---------------------------- 226 (334)
T 2qrd_G 178 AMLRVPLNQMTIGTWSN---LATASMETKVYDVIKMLAEKNISAVPIVNSEG---------------------------- 226 (334)
T ss_dssp GGCCCBGGGSSCSBCSS---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC----------------------------
T ss_pred hhhhCcHHHhCCcccCC---ceEECCCCcHHHHHHHHHHcCCcEEEEEcCCC----------------------------
Confidence 2346889995 7754 899999999999999999 7899999986432
Q ss_pred ccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCC------CeEEEcCCCcHHHHHHhc
Q 013939 166 NLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINP------NYSSIEASVPAIEATLKA 239 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~------~vitv~~~~~v~ea~~~M 239 (433)
+++|+||..|+++++.+... .....++++ +|++ +++++.+++++.+|+++|
T Consensus 227 ------------------~~~Giit~~dl~~~~~~~~~---~~~~~~v~~--~m~~~~~~~~~~~~v~~~~~l~~~~~~m 283 (334)
T 2qrd_G 227 ------------------TLLNVYESVDVMHLIQDGDY---SNLDLSVGE--ALLKRPANFDGVHTCRATDRLDGIFDAI 283 (334)
T ss_dssp ------------------BEEEEEETHHHHHHHTTSCG---GGGGSBHHH--HHTTCCTTCCCCCEECTTCBHHHHHHHH
T ss_pred ------------------cEEEEEEHHHHHHHhhcccc---ccccCcHHH--HHhcccccCCCCEEECCCCcHHHHHHHH
Confidence 46899999999998854210 112345554 5773 899999999999999999
Q ss_pred cc-CCCeeEEecCCCCCcceEEeecchhhhhhcc
Q 013939 240 PG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCD 272 (433)
Q Consensus 240 ~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~ 272 (433)
.+ ++..+||||+ +| +++|+||.+|+.+..
T Consensus 284 ~~~~~~~l~Vvd~--~g--~l~Giit~~dil~~~ 313 (334)
T 2qrd_G 284 KHSRVHRLFVVDE--NL--KLEGILSLADILNYI 313 (334)
T ss_dssp HHSCCCEEEEECT--TC--BEEEEEEHHHHHHHH
T ss_pred HHcCCCEEEEECC--CC--eEEEEEeHHHHHHHH
Confidence 99 9999999997 78 999999999998653
No 14
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.75 E-value=4e-19 Score=159.66 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=107.9
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC-
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD- 83 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~- 83 (433)
+..-+|+|+|. ++++++++++|+.+|+++|.+++++++||+|.+ ++++|+||..||++++....
T Consensus 15 l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-------------g~lvGiit~~Dll~~~~~~~~ 79 (170)
T 4esy_A 15 IRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-------------GHLVGIITESDFLRGSIPFWI 79 (170)
T ss_dssp HHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-------------SCEEEEEEGGGGGGGTCCTTH
T ss_pred HcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-------------ccEEEEEEHHHHHHHHhhccc
Confidence 44567899985 789999999999999999999999999999964 79999999999988654320
Q ss_pred ---------Ccc------hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhh
Q 013939 84 ---------CLE------DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSI 147 (433)
Q Consensus 84 ---------~l~------~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~ 147 (433)
... ......+.+|+++|+++ +++++++++|.+|+++|. +|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g----------- 145 (170)
T 4esy_A 80 YEASEILSRAIPAPEVEHLFETGRKLTASAVMTQP---VVTAAPEDSVGSIADQMRRHGIHRIPVVQDG----------- 145 (170)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCC---SCCBCTTSBHHHHHHHHHHTTCSEEEEEETT-----------
T ss_pred cchhhhhhhccchhhHHhhhccccccchhhhcccC---cccCCcchhHHHHHHHHHHcCCcEEEEEECC-----------
Confidence 000 01223467999999975 999999999999999999 899999998642
Q ss_pred hccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 148 LYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 148 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++||||++||++++..
T Consensus 146 ------------------------------------~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 146 ------------------------------------VPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp ------------------------------------EEEEEEEHHHHTTTSCC
T ss_pred ------------------------------------EEEEEEEHHHHHHHHHh
Confidence 35899999999998854
No 15
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.74 E-value=9.5e-18 Score=143.78 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=98.1
Q ss_pred CCCCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939 209 PLSSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLS 284 (433)
Q Consensus 209 ~~~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~ 284 (433)
...++++ +|+ .+++++.+++++.+|+++|.+ +++++||+|+ + | +++|+||.+||+......
T Consensus 4 ~~~~v~~--iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~--~~~Givt~~dl~~~~~~~--------- 68 (130)
T 3i8n_A 4 QDVPVTQ--VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD--NIIGFVHRLELFKMQQSG--------- 68 (130)
T ss_dssp ---CCTT--TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT--CEEEECCHHHHHHHHHTT---------
T ss_pred CcCCHhh--CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC--cEEEEEEHHHHHHHHhcC---------
Confidence 3456666 688 458899999999999999999 9999999997 6 7 999999999998653100
Q ss_pred chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939 285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT 364 (433)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 364 (433)
. + . . .+ . ..| +++++
T Consensus 69 ----------~--~----~---------~-----------------~v------~----------------~~m-~~~~~ 83 (130)
T 3i8n_A 69 ----------S--G----Q---------K-----------------QL------G----------------AVM-RPIQV 83 (130)
T ss_dssp ----------T--T----T---------S-----------------BH------H----------------HHS-EECCE
T ss_pred ----------C--C----c---------C-----------------CH------H----------------HHh-cCCcC
Confidence 0 0 0 0 00 0 113 36889
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
|++++++.+++.+|.+++++++||+|++ |+++||||+.||++++..
T Consensus 84 v~~~~~l~~~~~~m~~~~~~~~~Vvd~~--g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 84 VLNNTALPKVFDQMMTHRLQLALVVDEY--GTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp EETTSCHHHHHHHHHHHTCCEEEEECTT--SCEEEEEEHHHHHHHHHT
T ss_pred cCCCCcHHHHHHHHHHcCCeEEEEEcCC--CCEEEEEEHHHHHHHHcC
Confidence 9999999999999999999999999987 999999999999999874
No 16
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.73 E-value=1.3e-17 Score=145.89 Aligned_cols=123 Identities=14% Similarity=0.136 Sum_probs=103.5
Q ss_pred CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939 208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANL 283 (433)
Q Consensus 208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l 283 (433)
+...++++ +|++ +++++.+++++.+|+++|.+ +++++||+|+ + | +++|+||.+||+......
T Consensus 20 l~~~~v~d--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~--~lvGivt~~dl~~~~~~~-------- 85 (148)
T 3lv9_A 20 FEEKKIRE--IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD--DILGFVHIRDLYNQKINE-------- 85 (148)
T ss_dssp GGTCBGGG--TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT--SEEEEEEHHHHHHHHHHH--------
T ss_pred cCCCCHHH--ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC--cEEEEEEHHHHHHHHhcC--------
Confidence 44567776 6998 89999999999999999999 9999999997 6 7 999999999998653100
Q ss_pred cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939 284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL 363 (433)
Q Consensus 284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 363 (433)
.. ..+ + ..| .+++
T Consensus 86 -----------------------------~~---------------~~v-----------------~-----~~m-~~~~ 98 (148)
T 3lv9_A 86 -----------------------------NK---------------IEL-----------------E-----EIL-RDII 98 (148)
T ss_dssp -----------------------------SC---------------CCG-----------------G-----GTC-BCCE
T ss_pred -----------------------------CC---------------ccH-----------------H-----Hhc-CCCe
Confidence 00 000 0 225 7899
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+|++++++.+|+.+|.+++++++||+|++ |+++||||+.||++++..+
T Consensus 99 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~--g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 99 YISENLTIDKALERIRKEKLQLAIVVDEY--GGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp EEETTSBHHHHHHHHHHHTCSEEEEECTT--SSEEEEEEHHHHHHHHHHT
T ss_pred EECCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEEHHHHHHHHhCc
Confidence 99999999999999999999999999998 9999999999999999764
No 17
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.73 E-value=1.7e-17 Score=149.57 Aligned_cols=124 Identities=18% Similarity=0.150 Sum_probs=101.7
Q ss_pred CCCCCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939 208 LPLSSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANL 283 (433)
Q Consensus 208 l~~~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l 283 (433)
+...++++ +|+ .+++++.+++++.+|+++|.+ +++++||+|+ + | +++|+||.+||+.....
T Consensus 39 l~~~~v~d--iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~--~lvGivt~~dl~~~~~~--------- 103 (172)
T 3lhh_A 39 LDERTISS--LMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD--DMVGIISAKQLLSESIA--------- 103 (172)
T ss_dssp ----CTTT--TSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT--SEEEEEEHHHHHHHHHT---------
T ss_pred cCCCCHHH--hCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC--eEEEEEEHHHHHHHHhh---------
Confidence 34556665 688 689999999999999999999 9999999997 6 7 99999999999865300
Q ss_pred cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939 284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL 363 (433)
Q Consensus 284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 363 (433)
+ .. ..+ + ..| .+++
T Consensus 104 ----------~------------------~~---------------~~v-----------------~-----~im-~~~~ 117 (172)
T 3lhh_A 104 ----------G------------------ER---------------LEL-----------------V-----DLV-KNCN 117 (172)
T ss_dssp ----------T------------------CC---------------CCG-----------------G-----GGC-BCCE
T ss_pred ----------c------------------Cc---------------ccH-----------------H-----HHh-cCCe
Confidence 0 00 001 0 225 7899
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939 364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP 414 (433)
Q Consensus 364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~ 414 (433)
+|.+++++.+|+.+|.+++++++||||++ |+++||||+.||++++....
T Consensus 118 ~v~~~~~l~~a~~~m~~~~~~~~pVvd~~--g~lvGiit~~Dil~~l~~~~ 166 (172)
T 3lhh_A 118 FVPNSLSGMELLEHFRTTGSQMVFVVDEY--GDLKGLVTLQDMMDALTGEF 166 (172)
T ss_dssp EEETTCCHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHHHHHTTC
T ss_pred EeCCCCCHHHHHHHHHHcCCeEEEEEeCC--CCEEEEeeHHHHHHHHhCCC
Confidence 99999999999999999999999999997 99999999999999998643
No 18
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.72 E-value=1.6e-17 Score=143.15 Aligned_cols=136 Identities=20% Similarity=0.263 Sum_probs=101.1
Q ss_pred CCCCccccc-CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939 209 PLSSISSLG-VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG 286 (433)
Q Consensus 209 ~~~tV~~L~-im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~ 286 (433)
..++++++. +|.++++++.+++++.+|+++|.+ +++.+||+|+ +| +++|+||.+|++...... .......++.
T Consensus 6 ~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~~-~~~~~~~~v~ 80 (144)
T 2nyc_A 6 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE--NG--YLINVYEAYDVLGLIKGG-IYNDLSLSVG 80 (144)
T ss_dssp GGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT--TC--BEEEEEEHHHHHHHHHTC-----CCSBHH
T ss_pred hhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC--CC--cEEEEEcHHHHHHHhccc-ccccCCccHH
Confidence 356677755 577889999999999999999999 9999999997 78 999999999998653100 0000011111
Q ss_pred hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK 366 (433)
Q Consensus 287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 366 (433)
+++. . . .....++++|.
T Consensus 81 ~~m~----------------------~-----------------~------------------------~~~~~~~~~v~ 97 (144)
T 2nyc_A 81 EALM----------------------R-----------------R------------------------SDDFEGVYTCT 97 (144)
T ss_dssp HHHH----------------------H-----------------C------------------------C------CEEC
T ss_pred HHHh----------------------c-----------------C------------------------ccccCCCeEEC
Confidence 1110 0 0 00013788999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939 367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP 414 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~ 414 (433)
+++++.+++.+|.+++++++||+|++ |+++||||..||++++..++
T Consensus 98 ~~~~l~~~~~~m~~~~~~~l~Vvd~~--g~~~Giit~~dil~~l~~~~ 143 (144)
T 2nyc_A 98 KNDKLSTIMDNIRKARVHRFFVVDDV--GRLVGVLTLSDILKYILLGS 143 (144)
T ss_dssp TTSBHHHHHHHHHHHTCSEEEEECTT--SBEEEEEEHHHHHHHHHHC-
T ss_pred CCCcHHHHHHHHHHCCCCEEEEECCC--CCEEEEEEHHHHHHHHHhcc
Confidence 99999999999999999999999987 99999999999999998653
No 19
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.72 E-value=9e-18 Score=143.37 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=96.5
Q ss_pred CCcccccCcCCC--eEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939 211 SSISSLGVINPN--YSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAG 286 (433)
Q Consensus 211 ~tV~~L~im~~~--vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~ 286 (433)
.++++ +|++. ++++.+++++.+|+++|.+ +++++||+|+ + | +++|+||.+||++....
T Consensus 3 ~~v~d--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~--~~vGivt~~dl~~~~~~------------ 64 (127)
T 3nqr_A 3 QRVRD--IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD--HIEGILMAKDLLPFMRS------------ 64 (127)
T ss_dssp CBHHH--HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT--CEEEEEEGGGGGGGGST------------
T ss_pred cCHHH--hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC--cEEEEEEHHHHHHHHhc------------
Confidence 34555 68854 9999999999999999999 9999999997 6 7 99999999999865300
Q ss_pred hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK 366 (433)
Q Consensus 287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 366 (433)
.. .. ..+ . ..|. ++++|+
T Consensus 65 -------~~-----------------~~---------------~~v------~----------------~~m~-~~~~v~ 82 (127)
T 3nqr_A 65 -------DA-----------------EA---------------FSM------D----------------KVLR-TAVVVP 82 (127)
T ss_dssp -------TC-----------------CC---------------CCH------H----------------HHCB-CCCEEE
T ss_pred -------cC-----------------CC---------------CCH------H----------------HHcC-CCeEEC
Confidence 00 00 000 0 1133 478999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
+++++.+++.+|.+++++++||+|++ |+++||||+.||++++..
T Consensus 83 ~~~~l~~a~~~m~~~~~~~lpVvd~~--g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 83 ESKRVDRMLKEFRSQRYHMAIVIDEF--GGVSGLVTIEDILELIVG 126 (127)
T ss_dssp TTCBHHHHHHHHHHTTCCEEEEECTT--SCEEEEEEHHHHHHHC--
T ss_pred CCCcHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEEHHHHHHHHhC
Confidence 99999999999999999999999987 999999999999998764
No 20
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.72 E-value=2.7e-17 Score=146.93 Aligned_cols=135 Identities=18% Similarity=0.239 Sum_probs=110.0
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~ 84 (433)
|.-.++.++|.-..+++++++++|+.+|+++|.+++++++||+|.. ++++|+||..|+++++.....
T Consensus 12 ~l~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-------------~~lvGiit~~Di~~~~~~~~~ 78 (156)
T 3k6e_A 12 FLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-------------KQFVGTIGLRDIMAYQMEHDL 78 (156)
T ss_dssp HHHTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--------------CBEEEEEEHHHHHHHHHHHTC
T ss_pred HhhccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-------------CcEEEEEEecchhhhhhhccc
Confidence 4456788888766799999999999999999999999999999863 799999999999998875321
Q ss_pred cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939 85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS 164 (433)
Q Consensus 85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 164 (433)
. .....+.+|+++|.++ ++++++++++.+|+++|.+. +.+||+++.
T Consensus 79 ~--~~~~~~~~v~~im~~~---~~~v~~~~~l~~~~~~m~~~-~~lpVVd~~---------------------------- 124 (156)
T 3k6e_A 79 S--QEIMADTDIVHMTKTD---VAVVSPDFTITEVLHKLVDE-SFLPVVDAE---------------------------- 124 (156)
T ss_dssp C--HHHHTTSBGGGTCBCS---CCCBCTTCCHHHHHHHTTTS-SEEEEECTT----------------------------
T ss_pred c--cccccccCHHHhhcCC---ceecccccHHHHHHHHHHHc-CCeEEEecC----------------------------
Confidence 1 2344578999999965 99999999999999999832 348887543
Q ss_pred cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCC
Q 013939 165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGA 204 (433)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~ 204 (433)
|+++||||++||++.+......
T Consensus 125 ------------------g~l~GiiT~~Dil~~~~~~~~~ 146 (156)
T 3k6e_A 125 ------------------GIFQGIITRKSILKAVNALLHD 146 (156)
T ss_dssp ------------------SBEEEEEEHHHHHHHHHHHSCC
T ss_pred ------------------CEEEEEEEHHHHHHHHHHHhcc
Confidence 2568999999999998654443
No 21
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.71 E-value=2.8e-17 Score=140.83 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=98.0
Q ss_pred CCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939 211 SSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAG 286 (433)
Q Consensus 211 ~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~ 286 (433)
.++++ +|+ ++++++.+++++.+|+++|.+ +++++||+|+ + | +++|+||.+||++....
T Consensus 5 ~~v~d--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~--~~~Givt~~dl~~~~~~------------ 66 (129)
T 3jtf_A 5 RTVAD--IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD--NIIGILLAKDLLRYMLE------------ 66 (129)
T ss_dssp CBHHH--HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT--CEEEEEEGGGGGGGGTC------------
T ss_pred CCHHH--hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC--cEEEEEEHHHHHhHhcc------------
Confidence 45665 688 679999999999999999999 9999999997 5 7 99999999999865300
Q ss_pred hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK 366 (433)
Q Consensus 287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 366 (433)
.. . .+ . ..| .+++++.
T Consensus 67 --------------------------~~--~-------------~v------~----------------~~m-~~~~~v~ 82 (129)
T 3jtf_A 67 --------------------------PA--L-------------DI------R----------------SLV-RPAVFIP 82 (129)
T ss_dssp --------------------------TT--S-------------CG------G----------------GGC-BCCCEEE
T ss_pred --------------------------CC--c-------------CH------H----------------HHh-CCCeEeC
Confidence 00 0 00 0 113 3588999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+++++.+++.+|.+++++++||+|++ |+++||||+.||++++..+
T Consensus 83 ~~~~l~~~~~~m~~~~~~~~pVvd~~--g~~~Giit~~Dil~~l~ge 127 (129)
T 3jtf_A 83 EVKRLNVLLREFRASRNHLAIVIDEH--GGISGLVTMEDVLEQIVGD 127 (129)
T ss_dssp TTCBHHHHHHHHHTSSCCEEEEECC---CCEEEEEEHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEEHHHHHHHHhCC
Confidence 99999999999999999999999997 9999999999999998753
No 22
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.71 E-value=1.4e-17 Score=144.16 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=97.4
Q ss_pred CCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939 211 SSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSAG 286 (433)
Q Consensus 211 ~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~ 286 (433)
.++++ +|+ ++++++.+++++.+|+++|.+ +++++||+|+ + | +++|+||.+||++.....
T Consensus 3 ~~v~~--iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~--~~vGivt~~dl~~~~~~~----------- 65 (136)
T 3lfr_A 3 LQVRD--IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD--DVLGVLLAKDLLPLILKA----------- 65 (136)
T ss_dssp CBHHH--HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT--CEEEEEEGGGGGGGGGSS-----------
T ss_pred CChHh--ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC--cEEEEEEHHHHHHHHHhc-----------
Confidence 34555 688 579999999999999999999 9999999997 6 7 999999999998753100
Q ss_pred hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK 366 (433)
Q Consensus 287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 366 (433)
. ... ..+ . ..|. +++++.
T Consensus 66 --------~----------------~~~---------------~~v--~--------------------~~m~-~~~~v~ 83 (136)
T 3lfr_A 66 --------D----------------GDS---------------DDV--K--------------------KLLR-PATFVP 83 (136)
T ss_dssp --------S----------------GGG---------------CCG--G--------------------GTCB-CCCEEE
T ss_pred --------c----------------CCC---------------cCH--H--------------------HHcC-CCeEEC
Confidence 0 000 000 0 1233 489999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+++++.+|+.+|.+++++++||+|++ |+++||||+.||++++..+
T Consensus 84 ~~~~l~~~~~~m~~~~~~~~~Vvd~~--g~lvGiit~~Dil~~l~~~ 128 (136)
T 3lfr_A 84 ESKRLNVLLREFRANHNHMAIVIDEY--GGVAGLVTIEDVLEQIVGD 128 (136)
T ss_dssp TTCBHHHHHHHHHHHTCCEEEEECTT--SCEEEEEEHHHHHTTC---
T ss_pred CCCcHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEEHHHHHHHHhCC
Confidence 99999999999999999999999987 9999999999999998763
No 23
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.71 E-value=2.4e-17 Score=147.34 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=97.8
Q ss_pred CcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939 212 SISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF 288 (433)
Q Consensus 212 tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f 288 (433)
++++ +|+ .+++++.+++|+.+|+++|.+ +++++||+|+ +| +++|+||.+|+++...... +. .
T Consensus 16 ~~~~--iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~--~~--~lvGiit~~Di~~~~~~~~------~~---~ 80 (156)
T 3k6e_A 16 QEET--FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD--EK--QFVGTIGLRDIMAYQMEHD------LS---Q 80 (156)
T ss_dssp TGGG--GEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC---C--BEEEEEEHHHHHHHHHHHT------CC---H
T ss_pred cHHH--hCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC--CC--cEEEEEEecchhhhhhhcc------cc---c
Confidence 3444 576 479999999999999999999 9999999997 78 9999999999987531100 00 0
Q ss_pred hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939 289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT 368 (433)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~ 368 (433)
..... ..+ + ..|.+++++|+++
T Consensus 81 ------------------------~~~~~------------~~v-----------------~-----~im~~~~~~v~~~ 102 (156)
T 3k6e_A 81 ------------------------EIMAD------------TDI-----------------V-----HMTKTDVAVVSPD 102 (156)
T ss_dssp ------------------------HHHTT------------SBG-----------------G-----GTCBCSCCCBCTT
T ss_pred ------------------------ccccc------------cCH-----------------H-----HhhcCCceecccc
Confidence 00000 001 0 3368899999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939 369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP 414 (433)
Q Consensus 369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~ 414 (433)
+++.+|+.+|.+++ .+||||++ |+++||||++|||+++.+.-
T Consensus 103 ~~l~~~~~~m~~~~--~lpVVd~~--g~l~GiiT~~Dil~~~~~~~ 144 (156)
T 3k6e_A 103 FTITEVLHKLVDES--FLPVVDAE--GIFQGIITRKSILKAVNALL 144 (156)
T ss_dssp CCHHHHHHHTTTSS--EEEEECTT--SBEEEEEEHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHcC--CeEEEecC--CEEEEEEEHHHHHHHHHHHh
Confidence 99999999998876 49999998 99999999999999997643
No 24
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.70 E-value=5.4e-17 Score=144.83 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=107.3
Q ss_pred HHHccCCCCCCCCCCcccccCcCC---CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcch
Q 013939 198 LIGCLGALAPLPLSSISSLGVINP---NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDY 273 (433)
Q Consensus 198 l~~~~~~l~~l~~~tV~~L~im~~---~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~ 273 (433)
.+.....+..+...+|++ +|.+ +++++.+++++.+|+++|.+ +++.+||||+ +| +++|+||.+|+++...
T Consensus 11 ~~~~~~~~~~l~~~~v~d--im~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~ 84 (165)
T 3fhm_A 11 SSGRENLYFQGMATFVKD--LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA--DG--VVLGIFTERDLVKAVA 84 (165)
T ss_dssp -----CCCCSSSSCBHHH--HHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT--TS--CEEEEEEHHHHHHHHH
T ss_pred ccccchhhHhhhhcCHHH--HhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC--CC--eEEEEEEHHHHHHHHH
Confidence 333344556677778887 5875 79999999999999999999 9999999998 78 9999999999986531
Q ss_pred hHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCc
Q 013939 274 LAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGR 353 (433)
Q Consensus 274 ~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (433)
... .. . .. ..+ +
T Consensus 85 ~~~----~~-----~------------------------~~---------------~~v-----------------~--- 96 (165)
T 3fhm_A 85 GQG----AA-----S------------------------LQ---------------QSV-----------------S--- 96 (165)
T ss_dssp HHG----GG-----G------------------------GT---------------SBG-----------------G---
T ss_pred hcC----Cc-----c------------------------cc---------------CCH-----------------H---
Confidence 100 00 0 00 001 0
Q ss_pred cccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 354 SMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 354 ~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
..|..++++|++++++.+++.+|.+++++++||||+ |+++||||..||++++..+-.
T Consensus 97 --~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---g~~~Giit~~dil~~~~~~~~ 153 (165)
T 3fhm_A 97 --VAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN---GRLAGIISIGDVVKARIGEIE 153 (165)
T ss_dssp --GTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHHHHTTCC--
T ss_pred --HHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC---CEEEEEEEHHHHHHHHHHHHH
Confidence 225678999999999999999999999999999998 799999999999999976543
No 25
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.70 E-value=5.6e-17 Score=136.40 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=99.4
Q ss_pred CcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhh
Q 013939 212 SISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVM 290 (433)
Q Consensus 212 tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~ 290 (433)
++++ +|.++++++.+++++.+|++.|.+ +++.+||+|+ +| +++|+||.+|++.....
T Consensus 2 ~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~G~vt~~dl~~~~~~---------------- 59 (122)
T 3kpb_A 2 LVKD--ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE--HG--KLVGIITSWDIAKALAQ---------------- 59 (122)
T ss_dssp BHHH--HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT--TS--BEEEEECHHHHHHHHHT----------------
T ss_pred chHH--hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC--CC--CEEEEEEHHHHHHHHHh----------------
Confidence 3444 688999999999999999999999 9999999997 78 99999999999865300
Q ss_pred ccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCC
Q 013939 291 GVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSS 370 (433)
Q Consensus 291 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~s 370 (433)
.. . .+ + ..|..++++|.++++
T Consensus 60 ----------------------~~-~--------------~v-----------------~-----~~~~~~~~~v~~~~~ 80 (122)
T 3kpb_A 60 ----------------------NK-K--------------TI-----------------E-----EIMTRNVITAHEDEP 80 (122)
T ss_dssp ----------------------TC-C--------------BG-----------------G-----GTSBSSCCCEETTSB
T ss_pred ----------------------cc-c--------------CH-----------------H-----HHhcCCCeEECCCCC
Confidence 00 0 00 0 224678899999999
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+.+++.+|.+++++++||+|++ |+++|+||..||++++.++
T Consensus 81 l~~~~~~~~~~~~~~l~Vvd~~--g~~~Givt~~dl~~~l~~~ 121 (122)
T 3kpb_A 81 VDHVAIKMSKYNISGVPVVDDY--RRVVGIVTSEDISRLFGGK 121 (122)
T ss_dssp HHHHHHHHHHHTCSEEEEECTT--CBEEEEEEHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCCeEEEECCC--CCEEEEEeHHHHHHHhhcC
Confidence 9999999999999999999998 9999999999999998753
No 26
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.69 E-value=2.3e-16 Score=135.62 Aligned_cols=126 Identities=18% Similarity=0.296 Sum_probs=102.6
Q ss_pred CCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhh-cchhHHHHHHhhccch
Q 013939 209 PLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWK-CDYLAAAWALANLSAG 286 (433)
Q Consensus 209 ~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~-~~~~~~~~~~~~l~~~ 286 (433)
...++++ +|+++++++.+++++.+|+++|.+ +++++||+|+ +| +++|+||.+||.+ +...
T Consensus 5 ~~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~~------------ 66 (138)
T 2yzi_A 5 MKAPIKV--YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND--DG--NVVGFFTKSDIIRRVIVP------------ 66 (138)
T ss_dssp TTSBGGG--TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT--TS--CEEEEEEHHHHHHHTTTT------------
T ss_pred hhhhHHH--HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC--CC--cEEEEEeHHHHHHHHHhc------------
Confidence 3456665 688999999999999999999999 9999999997 78 9999999999963 3200
Q ss_pred hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK 366 (433)
Q Consensus 287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 366 (433)
+.+ .. ..+ + ..|..++++|+
T Consensus 67 ---------~~~--------------~~---------------~~v-----------------~-----~~m~~~~~~v~ 86 (138)
T 2yzi_A 67 ---------GLP--------------YD---------------IPV-----------------E-----RIMTRNLITAN 86 (138)
T ss_dssp ---------CCC--------------TT---------------SBG-----------------G-----GTCBCSCCEEE
T ss_pred ---------CCc--------------cc---------------CCH-----------------H-----HHhhCCCeEEC
Confidence 000 00 000 0 22577899999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+++++.+++.+|.+++++++ |||++ |+++||||..||++++...-.
T Consensus 87 ~~~~l~~~~~~m~~~~~~~l-Vvd~~--g~~~Giit~~dil~~~~~~~~ 132 (138)
T 2yzi_A 87 VNTPLGEVLRKMAEHRIKHI-LIEEE--GKIVGIFTLSDLLEASRRRLE 132 (138)
T ss_dssp TTSBHHHHHHHHHHHTCSEE-EEEET--TEEEEEEEHHHHHHHHHCCSC
T ss_pred CCCcHHHHHHHHHhcCCCEE-EECCC--CCEEEEEEHHHHHHHHHHHHH
Confidence 99999999999999999999 99977 999999999999999987543
No 27
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.69 E-value=3.7e-17 Score=140.64 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=97.2
Q ss_pred CcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939 212 SISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF 288 (433)
Q Consensus 212 tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f 288 (433)
++++ +|++ +++++.+++++.+|+++|.+ +++++||++++ +| +++|+||.+||++.....
T Consensus 3 ~v~~--iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~-~~--~lvGivt~~dl~~~~~~~------------- 64 (130)
T 3hf7_A 3 SVND--IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS-LD--DAISMLRVREAYRLMTEK------------- 64 (130)
T ss_dssp BHHH--HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS-GG--GEEEEEEHHHHHHHHTSS-------------
T ss_pred CHHH--hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC-CC--cEEEEEEHHHHHHHHhcc-------------
Confidence 3444 5863 69999999999999999999 99999999751 46 999999999998653000
Q ss_pred hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939 289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT 368 (433)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~ 368 (433)
. .+ .. . .+ . ..| ++++++.++
T Consensus 65 ------~-~~---~~---------~-----------------~v------~----------------~~m-~~~~~v~~~ 85 (130)
T 3hf7_A 65 ------K-EF---TK---------E-----------------IM------L----------------RAA-DEIYFVPEG 85 (130)
T ss_dssp ------S-CC---CH---------H-----------------HH------H----------------HHS-BCCCEEETT
T ss_pred ------C-cc---ch---------h-----------------hH------H----------------Hhc-cCCeEeCCC
Confidence 0 00 00 0 00 0 113 578999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+++.+++.+|.+++++++||+|++ |+++||||+.||++++..+
T Consensus 86 ~~l~~~~~~m~~~~~~~~~Vvd~~--g~lvGiit~~Dil~~l~g~ 128 (130)
T 3hf7_A 86 TPLSTQLVKFQRNKKKVGLVVDEY--GDIQGLVTVEDILEEIVGD 128 (130)
T ss_dssp CBHHHHHHHHHHHCCCEEEEECTT--SCEEEEEEHHHHHHHHHC-
T ss_pred CcHHHHHHHHHhcCCeEEEEEcCC--CCEEEEeeHHHHHHHHhCC
Confidence 999999999999999999999987 9999999999999999754
No 28
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.68 E-value=9e-17 Score=139.47 Aligned_cols=138 Identities=15% Similarity=0.238 Sum_probs=102.0
Q ss_pred CCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchh
Q 013939 211 SSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQ 287 (433)
Q Consensus 211 ~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~ 287 (433)
.++++ +|.+ +++++.+++++.+|+++|.+ +++++||+|+ +| +++|+||.+|++........+..
T Consensus 5 ~~v~~--im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~G~vt~~dl~~~~~~~~~~~~------- 71 (152)
T 4gqw_A 5 YTVGE--FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE--DW--KLVGLVSDYDLLALDSGDSTWKT------- 71 (152)
T ss_dssp SBGGG--TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT--TC--BEEEEEEHHHHTTCC----CCHH-------
T ss_pred EEhhh--ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC--CC--eEEEEEEHHHHHHhhcccCcccc-------
Confidence 35565 6887 89999999999999999999 9999999998 78 99999999999876411100000
Q ss_pred hhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC
Q 013939 288 FVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI 367 (433)
Q Consensus 288 f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p 367 (433)
|..... + +. .... ..+ + ..|..++++|.+
T Consensus 72 ~~~~~~-------~--------~~-~~~~-------------~~v-----------------~-----~~m~~~~~~v~~ 100 (152)
T 4gqw_A 72 FNAVQK-------L--------LS-KTNG-------------KLV-----------------G-----DLMTPAPLVVEE 100 (152)
T ss_dssp HHHHHT-------C--------------C-------------CBH-----------------H-----HHSEESCCCEES
T ss_pred hHHHHH-------H--------HH-Hhcc-------------ccH-----------------H-----HhcCCCceEECC
Confidence 000000 0 00 0000 000 0 235678899999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939 368 TSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP 414 (433)
Q Consensus 368 ~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~ 414 (433)
+++|.+++.+|.+++++++||||++ |+++||||..||++++.+..
T Consensus 101 ~~~l~~a~~~~~~~~~~~l~Vvd~~--g~~~Giit~~dil~~~~~~~ 145 (152)
T 4gqw_A 101 KTNLEDAAKILLETKYRRLPVVDSD--GKLVGIITRGNVVRAALQIK 145 (152)
T ss_dssp SSBHHHHHHHHHHSSCCEEEEECTT--SBEEEEEEHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHCCCCEEEEECCC--CcEEEEEEHHHHHHHHHhcc
Confidence 9999999999999999999999987 99999999999999998743
No 29
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=1.6e-16 Score=136.73 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=104.4
Q ss_pred hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939 9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ 88 (433)
Q Consensus 9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~ 88 (433)
+|+|+|...++++++++++|+.+|++.|.+++++++||++.+ .++++|+|+..||++++.+.....
T Consensus 3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~------------~~~lvGivt~~dl~~~~~~~~~~~-- 68 (130)
T 3hf7_A 3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS------------LDDAISMLRVREAYRLMTEKKEFT-- 68 (130)
T ss_dssp BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS------------GGGEEEEEEHHHHHHHHTSSSCCC--
T ss_pred CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC------------CCcEEEEEEHHHHHHHHhccCccc--
Confidence 689999655679999999999999999999999999999753 279999999999999886542221
Q ss_pred HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939 89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL 167 (433)
Q Consensus 89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 167 (433)
..+|+++|. + ++++++++++.+|++.|. ++++++||.++++
T Consensus 69 ----~~~v~~~m~-~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g------------------------------ 110 (130)
T 3hf7_A 69 ----KEIMLRAAD-E---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG------------------------------ 110 (130)
T ss_dssp ----HHHHHHHSB-C---CCEEETTCBHHHHHHHHHHHCCCEEEEECTTS------------------------------
T ss_pred ----hhhHHHhcc-C---CeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCC------------------------------
Confidence 257899994 3 789999999999999999 7999999986432
Q ss_pred ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++||||..|+++.+.+
T Consensus 111 ----------------~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 111 ----------------DIQGLVTVEDILEEIVG 127 (130)
T ss_dssp ----------------CEEEEEEHHHHHHHHHC
T ss_pred ----------------CEEEEeeHHHHHHHHhC
Confidence 46899999999998863
No 30
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.68 E-value=7.7e-17 Score=142.09 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=99.9
Q ss_pred CCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEe-cCCCCCcceEEeecchhhhhhcchhHHHHHHhhccch
Q 013939 211 SSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVL-EPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAG 286 (433)
Q Consensus 211 ~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVV-d~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~ 286 (433)
.++++ +|++ +++++.+++++.+|+++|.+ +++++||+ ++. +| +++|+||.+||+...... ..
T Consensus 20 ~~v~~--iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~-~~--~lvGivt~~dl~~~~~~~-----~~---- 85 (153)
T 3oco_A 20 KVASD--VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND-KD--KIIGYAYNYDIVRQARID-----DK---- 85 (153)
T ss_dssp CBHHH--HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE-EE--EEEEEEEHHHHHHHHHHH-----TT----
T ss_pred CEeee--EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC-CC--cEEEEEEHHHHHhHHhcC-----CC----
Confidence 45665 6886 89999999999999999999 99999999 641 36 999999999998653100 00
Q ss_pred hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK 366 (433)
Q Consensus 287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 366 (433)
. .+ + ..| +++++|.
T Consensus 86 --------------------------~-----------------~v-----------------~-----~~m-~~~~~v~ 99 (153)
T 3oco_A 86 --------------------------A-----------------KI-----------------S-----TIM-RDIVSVP 99 (153)
T ss_dssp --------------------------S-----------------BG-----------------G-----GTC-BCCEEEE
T ss_pred --------------------------C-----------------cH-----------------H-----HHh-CCCeEEC
Confidence 0 00 0 225 6899999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+++++.+|+.+|.+++++++||||++ |+++||||+.||++++..+
T Consensus 100 ~~~~l~~~~~~m~~~~~~~lpVvd~~--g~~vGivt~~dil~~l~~~ 144 (153)
T 3oco_A 100 ENMKVPDVMEEMSAHRVPMAIVIDEY--GGTSGIITDKDVYEELFGN 144 (153)
T ss_dssp TTSBHHHHHHHHHHTTCSCEEEECTT--SCEEEEECHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHcCCcEEEEEeCC--CCEEEEeeHHHHHHHHhcc
Confidence 99999999999999999999999997 9999999999999999864
No 31
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.68 E-value=4e-16 Score=136.32 Aligned_cols=126 Identities=15% Similarity=0.298 Sum_probs=108.8
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|...+|+|+|....+++++++++|+.+|++.|.+++++++||+|.+ .++++|+||..|++.++..+.
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~dl~~~~~~~~ 86 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKN------------KDDILGFVHIRDLYNQKINEN 86 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSS------------TTSEEEEEEHHHHHHHHHHHS
T ss_pred ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHhcCC
Confidence 46677899999754589999999999999999999999999999863 169999999999999875421
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
+.+|+++| .+ ++++.+++++.+|++.|. ++++++||+++.+
T Consensus 87 ---------~~~v~~~m-~~---~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g------------------------- 128 (148)
T 3lv9_A 87 ---------KIELEEIL-RD---IIYISENLTIDKALERIRKEKLQLAIVVDEYG------------------------- 128 (148)
T ss_dssp ---------CCCGGGTC-BC---CEEEETTSBHHHHHHHHHHHTCSEEEEECTTS-------------------------
T ss_pred ---------CccHHHhc-CC---CeEECCCCCHHHHHHHHHhcCCeEEEEEeCCC-------------------------
Confidence 57899999 54 899999999999999999 7999999986532
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++||||..|+++.+.+
T Consensus 129 ---------------------~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 129 ---------------------GTSGVVTIEDILEEIVG 145 (148)
T ss_dssp ---------------------SEEEEEEHHHHHHHHHH
T ss_pred ---------------------CEEEEEEHHHHHHHHhC
Confidence 46899999999999864
No 32
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.67 E-value=1.9e-16 Score=135.64 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=105.1
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+ .++++|+||..|++.++.+..
T Consensus 2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~~~Givt~~dl~~~~~~~~ 69 (130)
T 3i8n_A 2 NAQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQ------------KDNIIGFVHRLELFKMQQSGS 69 (130)
T ss_dssp -----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSS------------TTCEEEECCHHHHHHHHHTTT
T ss_pred CcCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC------------CCcEEEEEEHHHHHHHHhcCC
Confidence 46678899999766788999999999999999999999999999863 279999999999999876431
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
.+.+|+++|. +++++.+++++.+|++.|. ++++++||+++++
T Consensus 70 --------~~~~v~~~m~----~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g------------------------- 112 (130)
T 3i8n_A 70 --------GQKQLGAVMR----PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYG------------------------- 112 (130)
T ss_dssp --------TTSBHHHHSE----ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTS-------------------------
T ss_pred --------CcCCHHHHhc----CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCC-------------------------
Confidence 1478999995 2789999999999999999 7999999986532
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLI 199 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~ 199 (433)
+++||||..|+++++.
T Consensus 113 ---------------------~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 113 ---------------------TVLGLVTLEDIFEHLV 128 (130)
T ss_dssp ---------------------CEEEEEEHHHHHHHHH
T ss_pred ---------------------CEEEEEEHHHHHHHHc
Confidence 4689999999999885
No 33
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.67 E-value=3e-16 Score=137.00 Aligned_cols=134 Identities=18% Similarity=0.197 Sum_probs=110.3
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~ 84 (433)
|...+|+|+|..+.+++++++++|+.+|++.|.+++++++||+|.+ ++++|+||..||+.++.....
T Consensus 12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-------------~~~~Givt~~dl~~~~~~~~~ 78 (150)
T 3lqn_A 12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-------------YKLHGLISTAMILDGILGLER 78 (150)
T ss_dssp HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHHHHTBCSSS
T ss_pred hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-------------CCEEEEEEHHHHHHHHHhhcc
Confidence 5667899999755578999999999999999999999999999863 799999999999998865322
Q ss_pred cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939 85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS 163 (433)
Q Consensus 85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 163 (433)
.. .....+.+|+++|..+ ++++.+++++.+|++.|. +++ +||++++
T Consensus 79 ~~-~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~--------------------------- 125 (150)
T 3lqn_A 79 IE-FERLEEMKVEQVMKQD---IPVLKLEDSFAKALEMTIDHPF--ICAVNED--------------------------- 125 (150)
T ss_dssp BC-GGGGGGCBGGGTCBSS---CCEEETTCBHHHHHHHHHHCSE--EEEECTT---------------------------
T ss_pred cc-hhHHhcCCHHHHhcCC---CceeCCCCCHHHHHHHHHhCCE--EEEECCC---------------------------
Confidence 21 1233468999999865 899999999999999999 565 8887643
Q ss_pred ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC
Q 013939 164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG 203 (433)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~ 203 (433)
|+.+|+||+.|+++++.+...
T Consensus 126 -------------------g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 126 -------------------GYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp -------------------CBEEEEEEHHHHHHHHHHHC-
T ss_pred -------------------CcEEEEEEHHHHHHHHHHHhH
Confidence 256899999999999976543
No 34
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.66 E-value=8.5e-16 Score=131.24 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=107.3
Q ss_pred cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939 6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL 85 (433)
Q Consensus 6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l 85 (433)
...+|+|+|. ++++++++++++.+|++.|.+++++++||+| + ++++|+|+..|++.++.++..
T Consensus 2 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-------------~~~~Givt~~dl~~~~~~~~~- 64 (133)
T 2ef7_A 2 EEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-------------NKPVGIITERDIVKAIGKGKS- 64 (133)
T ss_dssp CCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-------------TEEEEEEEHHHHHHHHHTTCC-
T ss_pred CcccHHHhcc--CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-------------CEEEEEEcHHHHHHHHhcCCC-
Confidence 4567899986 5689999999999999999999999999999 4 799999999999988765311
Q ss_pred chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939 86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS 164 (433)
Q Consensus 86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 164 (433)
.+.+|+++|..+ ++++++++++.+|++.|. ++++++||++++
T Consensus 65 ------~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~---------------------------- 107 (133)
T 2ef7_A 65 ------LETKAEEFMTAS---LITIREDSPITGALALMRQFNIRHLPVVDDK---------------------------- 107 (133)
T ss_dssp ------TTCBGGGTSEEC---CCCEETTSBHHHHHHHHHHHTCSEEEEECTT----------------------------
T ss_pred ------cccCHHHHcCCC---CEEECCCCCHHHHHHHHHHcCCCEEEEECCC----------------------------
Confidence 247899999864 899999999999999999 799999998643
Q ss_pred cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCC
Q 013939 165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGA 204 (433)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~ 204 (433)
|+.+|+||..|+++++.+....
T Consensus 108 ------------------g~~~Giit~~dll~~~~~~~~~ 129 (133)
T 2ef7_A 108 ------------------GNLKGIISIRDITRAIDDMFET 129 (133)
T ss_dssp ------------------SCEEEEEEHHHHHHHHHHHC--
T ss_pred ------------------CeEEEEEEHHHHHHHHHHHHHH
Confidence 2468999999999999765443
No 35
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.66 E-value=4.7e-17 Score=142.62 Aligned_cols=137 Identities=20% Similarity=0.189 Sum_probs=100.2
Q ss_pred eHHHHHHHHHHccCCCCCCCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchh
Q 013939 190 SREDVIRFLIGCLGALAPLPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISAS 266 (433)
Q Consensus 190 Tq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~ 266 (433)
++.|..+|-. .+.++.....++++ +|++ +++++.+++++.+|+++|.+ +++.+||+|+ +| +++|+||.+
T Consensus 9 ~~~~~~~~~~--~~~l~~~l~~~v~d--im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~--~~--~~~Givt~~ 80 (149)
T 3k2v_A 9 TAEDFALSHP--GGALGRKLLLRVND--IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD--DM--NIIGIFTDG 80 (149)
T ss_dssp -------------CHHHHHTTSBGGG--TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT--TC--BEEEEEEHH
T ss_pred CHHHhhhcCC--CchhchhcccCHHH--HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC--CC--cEEEEecHH
Confidence 3455544321 12233334457776 6998 99999999999999999999 9999999998 78 999999999
Q ss_pred hhhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCC
Q 013939 267 KLWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRS 346 (433)
Q Consensus 267 DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (433)
|+++.... +. .+ .. ..+
T Consensus 81 dl~~~~~~-------------------~~-~~---~~--------------------------~~v-------------- 97 (149)
T 3k2v_A 81 DLRRVFDT-------------------GV-DM---RD--------------------------ASI-------------- 97 (149)
T ss_dssp HHHHHHCS-------------------SS-CC---TT--------------------------CBH--------------
T ss_pred HHHHHHhc-------------------CC-Cc---cc--------------------------CcH--------------
Confidence 99864300 00 00 00 000
Q ss_pred CCCCCCccccCCCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 347 PSFGTGRSMYRGRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 347 ~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+ ..|..++++|++++++.+++.+|.+++++++||+|+ ++++||||..||++
T Consensus 98 ---~-----~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~Giit~~dil~ 148 (149)
T 3k2v_A 98 ---A-----DVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG---DHLLGVVHMHDLLR 148 (149)
T ss_dssp ---H-----HHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHTC
T ss_pred ---H-----HHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC---CEEEEEEEHHHhhc
Confidence 0 225678899999999999999999999999999998 59999999999985
No 36
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.66 E-value=3.5e-16 Score=133.66 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=101.4
Q ss_pred CCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939 210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF 288 (433)
Q Consensus 210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f 288 (433)
..++++ +|.++++++.+++++.+|+++|.+ +++.+||+| +| +++|+||.+|++.+...
T Consensus 3 ~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~--~~~Givt~~dl~~~~~~-------------- 61 (133)
T 2ef7_A 3 EEIVKE--YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD---GN--KPVGIITERDIVKAIGK-------------- 61 (133)
T ss_dssp CCBGGG--TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE---TT--EEEEEEEHHHHHHHHHT--------------
T ss_pred cccHHH--hccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE---CC--EEEEEEcHHHHHHHHhc--------------
Confidence 345665 688899999999999999999999 999999999 47 99999999999764300
Q ss_pred hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939 289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT 368 (433)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~ 368 (433)
+. .+ . ..+ + ..|..++++|+++
T Consensus 62 -----~~-~~---------------~---------------~~v-----------------~-----~~~~~~~~~v~~~ 83 (133)
T 2ef7_A 62 -----GK-SL---------------E---------------TKA-----------------E-----EFMTASLITIRED 83 (133)
T ss_dssp -----TC-CT---------------T---------------CBG-----------------G-----GTSEECCCCEETT
T ss_pred -----CC-Cc---------------c---------------cCH-----------------H-----HHcCCCCEEECCC
Confidence 00 00 0 000 0 2246689999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+++.+++.+|.+++++++||+|++ |+++|+||+.||++++.+.-.
T Consensus 84 ~~l~~~~~~~~~~~~~~l~Vvd~~--g~~~Giit~~dll~~~~~~~~ 128 (133)
T 2ef7_A 84 SPITGALALMRQFNIRHLPVVDDK--GNLKGIISIRDITRAIDDMFE 128 (133)
T ss_dssp SBHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHcCCCEEEEECCC--CeEEEEEEHHHHHHHHHHHHH
Confidence 999999999999999999999987 999999999999999987543
No 37
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.66 E-value=2.1e-16 Score=140.13 Aligned_cols=123 Identities=11% Similarity=0.150 Sum_probs=99.1
Q ss_pred CCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939 210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF 288 (433)
Q Consensus 210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f 288 (433)
..++++ +|++ ++++.+++++.+|+++|.+ +++.+||+|+ +| +++|+||.+|++.....
T Consensus 16 ~~~v~~--im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~-------------- 74 (159)
T 3fv6_A 16 KLQVKD--FQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDR--DA--VLVGVLSRKDLLRASIG-------------- 74 (159)
T ss_dssp TCBGGG--SCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECT--TS--CEEEEEEHHHHHHHHTS--------------
T ss_pred hCCHHH--HcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcC--CC--cEEEEEeHHHHHHHhhc--------------
Confidence 345665 6877 4599999999999999999 9999999997 78 99999999999864200
Q ss_pred hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC--CCeEec
Q 013939 289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS--TPLTCK 366 (433)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~ 366 (433)
.. .+ .. . .+ + ..|.. ++++|+
T Consensus 75 -----~~-~~---~~---------~-----------------~v-----------------~-----~~m~~~~~~~~v~ 97 (159)
T 3fv6_A 75 -----QQ-EL---TS---------V-----------------PV-----------------H-----IIMTRMPNITVCR 97 (159)
T ss_dssp -----CS-CT---TT---------C-----------------BG-----------------G-----GTSEETTSCCCBC
T ss_pred -----cC-cc---cC---------c-----------------CH-----------------H-----HHHcCCCCcEEEC
Confidence 00 00 00 0 00 0 22455 889999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCC---eEEEEEeHHHHHHHHHh
Q 013939 367 ITSSLAAVMAQMLSHRATHVWVTEDESDD---VLVGVVGYADILVAVTK 412 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~---~lvGIVs~~DIL~~i~~ 412 (433)
+++++.+|+.+|.+++++++||||++ | +++||||..||++++.+
T Consensus 98 ~~~~l~~a~~~m~~~~~~~lpVvd~~--g~~~~~vGiit~~dil~~l~~ 144 (159)
T 3fv6_A 98 REDYVMDIAKHLIEKQIDALPVIKDT--DKGFEVIGRVTKTNMTKILVS 144 (159)
T ss_dssp TTSBHHHHHHHHHHHTCSEEEEEEEC--SSSEEEEEEEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCcEEEEEeCC--CcceeEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999997 7 99999999999999987
No 38
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.66 E-value=9.9e-17 Score=143.58 Aligned_cols=149 Identities=13% Similarity=0.244 Sum_probs=101.2
Q ss_pred CcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939 212 SISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF 288 (433)
Q Consensus 212 tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f 288 (433)
++++ +|.+ +++++.+++++.+|+++|.+ +++++||||+ +| +++|+||.+||+++....... .+...+
T Consensus 5 ~v~d--im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~--~~~Givt~~dl~~~~~~~~~~----~~~~~~ 74 (180)
T 3sl7_A 5 TVGD--FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD--NW--TLVGVVSDYDLLALDSISGRS----QNDTNL 74 (180)
T ss_dssp BHHH--HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT--TC--BEEEEEEHHHHTCC-----------------
T ss_pred eHHH--hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC--CC--eEEEEEEHHHHHhhhhhcccc----CCcccc
Confidence 4454 5887 89999999999999999999 9999999998 78 999999999999753110000 000000
Q ss_pred hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939 289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT 368 (433)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~ 368 (433)
... ....|..|.. ....+. .. ....+ + ..|..++++|+++
T Consensus 75 ~~~--~~~~~~~~~~--~~~~~~-~~-------------~~~~v-----------------~-----~~m~~~~~~v~~~ 114 (180)
T 3sl7_A 75 FPD--VDSTWKTFNE--LQKLIS-KT-------------YGKVV-----------------G-----DLMTPSPLVVRDS 114 (180)
T ss_dssp --------CCCSHHH--HHHHHH-TT-------------TTCBH-----------------H-----HHSEESCCCEETT
T ss_pred ccc--ccchhhhhHH--HHHHHh-cc-------------ccccH-----------------H-----HHhCCCceEeCCC
Confidence 000 0000110000 000000 00 00000 0 3367789999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
++|.+|+.+|.+++++++||||++ |+++||||+.||++++..
T Consensus 115 ~~l~~a~~~m~~~~~~~lpVvd~~--g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 115 TNLEDAARLLLETKFRRLPVVDAD--GKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp SBHHHHHHHHTTSTTCEEEEECTT--CBEEEEEEHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCEEEEECCC--CeEEEEEEHHHHHHHHHH
Confidence 999999999999999999999987 999999999999999976
No 39
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.66 E-value=3.4e-16 Score=134.05 Aligned_cols=123 Identities=16% Similarity=0.262 Sum_probs=104.7
Q ss_pred cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939 6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL 85 (433)
Q Consensus 6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l 85 (433)
...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+ .++++|+||..|+++++...
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~~~Givt~~dl~~~~~~~--- 67 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDD------------RDNIIGILLAKDLLRYMLEP--- 67 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSS------------TTCEEEEEEGGGGGGGGTCT---
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC------------CCcEEEEEEHHHHHhHhccC---
Confidence 456799999755778999999999999999999999999999863 26999999999998876421
Q ss_pred chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939 86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS 164 (433)
Q Consensus 86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 164 (433)
+.+|+++|.. ++++.+++++.+|++.|. ++++++||+++.+
T Consensus 68 -------~~~v~~~m~~----~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g--------------------------- 109 (129)
T 3jtf_A 68 -------ALDIRSLVRP----AVFIPEVKRLNVLLREFRASRNHLAIVIDEHG--------------------------- 109 (129)
T ss_dssp -------TSCGGGGCBC----CCEEETTCBHHHHHHHHHTSSCCEEEEECC-C---------------------------
T ss_pred -------CcCHHHHhCC----CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCC---------------------------
Confidence 4689999963 789999999999999999 7899999986532
Q ss_pred cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++||||..|+++.+.+
T Consensus 110 -------------------~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 110 -------------------GISGLVTMEDVLEQIVG 126 (129)
T ss_dssp -------------------CEEEEEEHHHHHHHHHH
T ss_pred -------------------CEEEEEEHHHHHHHHhC
Confidence 46899999999999864
No 40
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.66 E-value=7.3e-16 Score=129.49 Aligned_cols=118 Identities=18% Similarity=0.243 Sum_probs=103.2
Q ss_pred hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939 9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ 88 (433)
Q Consensus 9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~ 88 (433)
+|+|+|. ++++++++++++.+|++.|.++++.++||+|.+ ++++|+|+..|++.++...
T Consensus 2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~G~vt~~dl~~~~~~~------ 60 (122)
T 3kpb_A 2 LVKDILS--KPPITAHSNISIMEAAKILIKHNINHLPIVDEH-------------GKLVGIITSWDIAKALAQN------ 60 (122)
T ss_dssp BHHHHCC--SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-------------SBEEEEECHHHHHHHHHTT------
T ss_pred chHHhhC--CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-------------CCEEEEEEHHHHHHHHHhc------
Confidence 6889986 678999999999999999999999999999963 7999999999999987543
Q ss_pred HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939 89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL 167 (433)
Q Consensus 89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 167 (433)
..+|+++|.++ ++++++++++.+|++.|. ++++++||.++++
T Consensus 61 ----~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g------------------------------ 103 (122)
T 3kpb_A 61 ----KKTIEEIMTRN---VITAHEDEPVDHVAIKMSKYNISGVPVVDDYR------------------------------ 103 (122)
T ss_dssp ----CCBGGGTSBSS---CCCEETTSBHHHHHHHHHHHTCSEEEEECTTC------------------------------
T ss_pred ----ccCHHHHhcCC---CeEECCCCCHHHHHHHHHHhCCCeEEEECCCC------------------------------
Confidence 24899999865 899999999999999999 8999999986532
Q ss_pred ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+.+|+||..|+++++.+
T Consensus 104 ----------------~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 104 ----------------RVVGIVTSEDISRLFGG 120 (122)
T ss_dssp ----------------BEEEEEEHHHHHHHHC-
T ss_pred ----------------CEEEEEeHHHHHHHhhc
Confidence 46899999999999854
No 41
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.66 E-value=2.4e-16 Score=135.30 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=101.3
Q ss_pred CCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhh-hhcchhHHHHHHhhccch
Q 013939 209 PLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKL-WKCDYLAAAWALANLSAG 286 (433)
Q Consensus 209 ~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL-~~~~~~~~~~~~~~l~~~ 286 (433)
...++++ +|+++++++.+++++.+|+++|.+ +++.+||+|+ +| +++|+||.+|+ ......
T Consensus 6 ~~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~~------------ 67 (138)
T 2p9m_A 6 KNIKVKD--VMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD--EN--KVIGIVTTTDIGYNLIRD------------ 67 (138)
T ss_dssp TTCBGGG--TSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT--TC--BEEEEEEHHHHHHHHTTT------------
T ss_pred ccCCHHH--hhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC--CC--eEEEEEEHHHHHHHHHhh------------
Confidence 3456665 688999999999999999999999 9999999997 78 99999999999 754300
Q ss_pred hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK 366 (433)
Q Consensus 287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 366 (433)
+.+ .. . .+ + ..|..++++|+
T Consensus 68 ---------~~~---~~---------~-----------------~v-----------------~-----~~m~~~~~~v~ 87 (138)
T 2p9m_A 68 ---------KYT---LE---------T-----------------TI-----------------G-----DVMTKDVITIH 87 (138)
T ss_dssp ---------CCC---SS---------C-----------------BH-----------------H-----HHSCSSCCCEE
T ss_pred ---------ccc---CC---------c-----------------CH-----------------H-----HHhCCCcEEEC
Confidence 000 00 0 00 0 22567899999
Q ss_pred CCCCHHHHHHHHHHcC-----CCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 367 ITSSLAAVMAQMLSHR-----ATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~-----vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+++++.+++.+|.+++ ++++||+|++ |+++|+||..||++++.++
T Consensus 88 ~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~--g~~~Giit~~dll~~~~~~ 137 (138)
T 2p9m_A 88 EDASILEAIKKMDISGKKEEIINQLPVVDKN--NKLVGIISDGDIIRTISKI 137 (138)
T ss_dssp TTSBHHHHHHHHTCC-----CCCEEEEECTT--SBEEEEEEHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhcCCccccccEEEEECCC--CeEEEEEEHHHHHHHHHhh
Confidence 9999999999999999 9999999977 9999999999999998753
No 42
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.65 E-value=1.9e-16 Score=139.14 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=94.1
Q ss_pred CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCCCCC
Q 013939 221 PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNVTPR 299 (433)
Q Consensus 221 ~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~ 299 (433)
++++++.+++++.+|+++|.+ +++++||+|+ +| +++|+||.+||+...... +..
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~--~~vGivt~~dl~~~~~~~---------------~~~------ 83 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDE--KG--RVVDIYSKFDVINLAAEK---------------TYN------ 83 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEECT--TS--BEEEEEEHHHHHHHHHCS---------------SCC------
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEECC--CC--cEEEEEeHHHHHHHhcch---------------hhh------
Confidence 789999999999999999999 9999999997 78 999999999998643100 000
Q ss_pred CCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHHHHH
Q 013939 300 SFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMAQML 379 (433)
Q Consensus 300 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~~m~ 379 (433)
.+.. . +..+.. + . ..+..++++|++++++.+|+.+|.
T Consensus 84 ~~~~-~------------------v~~~m~------~-----------~-------~~~~~~~~~v~~~~~l~~a~~~m~ 120 (152)
T 2uv4_A 84 NLDV-S------------------VTKALQ------H-----------R-------SHYFEGVLKCYLHETLETIINRLV 120 (152)
T ss_dssp CTTS-B------------------GGGGGG------T-----------C-------CHHHHTCSEECTTSBHHHHHHHHH
T ss_pred hhcc-h------------------HHHHHh------h-----------h-------hcccCCCeEECCCCcHHHHHHHHH
Confidence 0000 0 000000 0 0 002368899999999999999999
Q ss_pred HcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 380 SHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 380 ~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
+++++++||+|++ |+++||||+.||++++..
T Consensus 121 ~~~~~~lpVvd~~--g~~vGiit~~dil~~l~~ 151 (152)
T 2uv4_A 121 EAEVHRLVVVDEN--DVVKGIVSLSDILQALVL 151 (152)
T ss_dssp HHTCSEEEEECTT--SBEEEEEEHHHHHHHHC-
T ss_pred HcCCeEEEEECCC--CeEEEEEEHHHHHHHHHh
Confidence 9999999999987 999999999999998864
No 43
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.65 E-value=6.8e-16 Score=149.18 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=49.6
Q ss_pred CCCCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 358 GRSTPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 358 ~~~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
|...|+|+.++++|.+|+.+|..++++|+||++. |+|+||||+.||++++..
T Consensus 195 md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~---GrLVGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 195 IDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM---GKLVGVVALAEIQAAIEG 246 (250)
T ss_dssp EECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHHHHHHC
T ss_pred ccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC---CEEEEEEEHHHHHHHHHH
Confidence 6889999999999999999999999999999986 899999999999999973
No 44
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.65 E-value=5.7e-16 Score=132.10 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=100.8
Q ss_pred CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939 211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV 289 (433)
Q Consensus 211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~ 289 (433)
.++++ +|.++++++.+++++.+|+++|.+ +++.+||+|+ | +++|+||.+|+++....
T Consensus 5 ~~v~~--~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~--~~~Givt~~dl~~~~~~--------------- 62 (128)
T 3gby_A 5 VTFSY--LAETDYPVFTLGGSTADAARRLAASGCACAPVLDG---E--RYLGMVHLSRLLEGRKG--------------- 62 (128)
T ss_dssp CBGGG--GCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET---T--EEEEEEEHHHHHTTCSS---------------
T ss_pred eEHHH--hhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC---C--EEEEEEEHHHHHHHHhh---------------
Confidence 45665 699999999999999999999999 9999999994 7 99999999999865300
Q ss_pred hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939 290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~ 369 (433)
..... ..+ + ..|..+++++++++
T Consensus 63 -----------------------~~~~~------------~~v-----------------~-----~~m~~~~~~v~~~~ 85 (128)
T 3gby_A 63 -----------------------WPTVK------------EKL-----------------G-----EELLETVRSYRPGE 85 (128)
T ss_dssp -----------------------SCCTT------------CBC-----------------C-----GGGCBCCCCBCTTS
T ss_pred -----------------------CCccc------------CcH-----------------H-----HHccCCCcEECCCC
Confidence 00000 000 0 22577889999999
Q ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
++.+++.+|.+++++++||+|++ |+++|+||..||++++.+.
T Consensus 86 ~l~~~~~~~~~~~~~~lpVvd~~--g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 86 QLFDNLISVAAAKCSVVPLADED--GRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp BGGGSHHHHHHCSSSEEEEECTT--CBEEEEEEHHHHHHHHHTT
T ss_pred CHHHHHHHHHhCCCcEEEEECCC--CCEEEEEEHHHHHHHHHhh
Confidence 99999999999999999999987 9999999999999998753
No 45
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.65 E-value=3.9e-16 Score=141.75 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=101.7
Q ss_pred CCCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhccc
Q 013939 210 LSSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLSA 285 (433)
Q Consensus 210 ~~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~ 285 (433)
..++++ +|+ ++++++.+++++.+|+++|.+ +++++||+|+ + | +++|+||.+||+......
T Consensus 35 ~~~v~d--iM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~--~lvGivt~~Dl~~~~~~~---------- 98 (173)
T 3ocm_A 35 ERSIRS--IMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD--EVVGIGRAKDLVADLITE---------- 98 (173)
T ss_dssp TSCSTT--TSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT--SEEEEEEHHHHHHHHHHH----------
T ss_pred CCCHHH--hCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC--CEEEEEEHHHHHHHHhcC----------
Confidence 455665 687 469999999999999999999 9999999997 5 7 999999999998653100
Q ss_pred hhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEe
Q 013939 286 GQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTC 365 (433)
Q Consensus 286 ~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 365 (433)
.. ..+ . +..++++|
T Consensus 99 ---------------------------~~---------------~~v-----------------------~-~~~~~~~v 112 (173)
T 3ocm_A 99 ---------------------------GR---------------VRR-----------------------N-RLRDPIIV 112 (173)
T ss_dssp ---------------------------SS---------------CCG-----------------------G-GSBCCCEE
T ss_pred ---------------------------Cc---------------chh-----------------------H-hcCCCeEE
Confidence 00 000 1 34678999
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 366 KITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 366 ~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
.+++++.+|+.+|.+++++++||+|++ |+++||||+.||++++..+-.
T Consensus 113 ~~~~~l~~al~~m~~~~~~~~~Vvde~--g~lvGiIT~~Dil~~l~~~i~ 160 (173)
T 3ocm_A 113 HESIGILRLMDTLKRSRGQLVLVADEF--GAIEGLVTPIDVFEAIAGEFP 160 (173)
T ss_dssp CGGGCHHHHHHHHHHSTTCCEEEECTT--CCEEEEECHHHHHHHHHCCCC
T ss_pred CCCCcHHHHHHHHHHcCCeEEEEEeCC--CCEEEEEeHHHHHHHHhCcCC
Confidence 999999999999999999999999987 999999999999999997543
No 46
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.65 E-value=4.1e-16 Score=138.22 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=95.4
Q ss_pred CCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC-CcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939 209 PLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE-DQYKIIGEISASKLWKCDYLAAAWALANLS 284 (433)
Q Consensus 209 ~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~-g~~klvGiIS~~DL~~~~~~~~~~~~~~l~ 284 (433)
...++++ +|++ +++++.+++++.+|+++|.+ +++++||+|+ + + +++|+||.+|++...... ..
T Consensus 36 ~~~~v~d--iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~--~lvGivt~~dl~~~~~~~-----~~-- 102 (156)
T 3oi8_A 36 SDLEVRD--AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD--EVLGILHAKDLLKYMFNP-----EQ-- 102 (156)
T ss_dssp TTCBGGG--TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT--CEEEEEEGGGGGGGSSCG-----GG--
T ss_pred CCCCHhh--eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC--cEEEEEEHHHHHHHHHcC-----Cc--
Confidence 3456776 6886 79999999999999999999 9999999997 5 5 999999999998753000 00
Q ss_pred chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939 285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT 364 (433)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 364 (433)
. .+ . ..|. ++++
T Consensus 103 ----------------------------~-----------------~v------~----------------~im~-~~~~ 114 (156)
T 3oi8_A 103 ----------------------------F-----------------HL------K----------------SILR-PAVF 114 (156)
T ss_dssp ----------------------------C-----------------CH------H----------------HHCB-CCCE
T ss_pred ----------------------------c-----------------cH------H----------------HHcC-CCEE
Confidence 0 00 0 1133 4889
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHH
Q 013939 365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADIL 407 (433)
Q Consensus 365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL 407 (433)
+++++++.+|+.+|.+++++++||+|++ |+++||||+.||+
T Consensus 115 v~~~~~l~~a~~~m~~~~~~~~~Vvd~~--g~~~Givt~~Dil 155 (156)
T 3oi8_A 115 VPEGKSLTALLKEFREQRNHMAIVIDEY--GGTSGLVTFEDII 155 (156)
T ss_dssp EETTSBHHHHHHHHHHTTCCEEEEECTT--SSEEEEEEHHHHC
T ss_pred ECCCCCHHHHHHHHHhcCCeEEEEECCC--CCEEEEEEHHHhc
Confidence 9999999999999999999999999987 9999999999986
No 47
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.64 E-value=6.8e-16 Score=137.17 Aligned_cols=130 Identities=12% Similarity=0.152 Sum_probs=100.6
Q ss_pred CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939 211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV 289 (433)
Q Consensus 211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~ 289 (433)
.++++ +|+++++++.+++++.+|+++|.+ +++++||||+ +| +++|+||.+||+..... . +.
T Consensus 5 ~~v~d--im~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~--~~--~lvGivt~~dl~~~~~~----~--------~~ 66 (160)
T 2o16_A 5 IKVED--MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA--NK--KLLGIVSQRDLLAAQES----S--------LQ 66 (160)
T ss_dssp CBGGG--TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT--TC--BEEEEEEHHHHHHHHHH----H--------CC
T ss_pred CcHHH--HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC--CC--cEEEEEeHHHHHHHHHH----h--------hc
Confidence 35565 688999999999999999999999 9999999997 78 99999999999865311 0 00
Q ss_pred hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939 290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~ 369 (433)
.+..+. . .... ..+ + ..|..++++|++++
T Consensus 67 ~~~~~~---~-------------~~~~-------------~~v-----------------~-----~im~~~~~~v~~~~ 95 (160)
T 2o16_A 67 RSAQGD---S-------------LAFE-------------TPL-----------------F-----EVMHTDVTSVAPQA 95 (160)
T ss_dssp -------------------------CC-------------CBH-----------------H-----HHSCSCEEEBCTTS
T ss_pred cccccc---c-------------hhcc-------------cCH-----------------H-----HHhcCCCeEECCCC
Confidence 000000 0 0000 000 0 23577899999999
Q ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
+|.+|+.+|.+++++++||||+ |+++||||..||++++..
T Consensus 96 ~l~~a~~~m~~~~~~~lpVvd~---g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 96 GLKESAIYMQKHKIGCLPVVAK---DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp BHHHHHHHHHHTTCSCEEEEET---TEEEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEEEEC---CEEEEEEEHHHHHHHHHH
Confidence 9999999999999999999997 799999999999998765
No 48
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.64 E-value=2.6e-15 Score=142.44 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=43.5
Q ss_pred CC-CCCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHH
Q 013939 358 GR-STPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVT 411 (433)
Q Consensus 358 ~~-~~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~ 411 (433)
|+ +++++|++++++.+++++|.+++++++||||++ |+++||||+.||+++..
T Consensus 191 m~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~--~~~~Giit~~dll~~~~ 243 (245)
T 3l2b_A 191 MTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDEN--NKVVGSIARFHLISTHK 243 (245)
T ss_dssp SBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTT--CBEEEEEECC-------
T ss_pred ecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCC--CeEEEEEEHHHhhchhh
Confidence 67 899999999999999999999999999999987 99999999999998754
No 49
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.64 E-value=5.3e-16 Score=136.65 Aligned_cols=125 Identities=20% Similarity=0.259 Sum_probs=107.1
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceee-ccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVW-KKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVv-d~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
|...+|+|+|....+++++++++|+.+|++.|.+++++++||+ +.+ .++++|+||..||+.++...
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~------------~~~lvGivt~~dl~~~~~~~- 83 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND------------KDKIIGYAYNYDIVRQARID- 83 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE------------EEEEEEEEEHHHHHHHHHHH-
T ss_pred cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC------------CCcEEEEEEHHHHHhHHhcC-
Confidence 4567899999643478999999999999999999999999999 542 27999999999999987542
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
.+.+|+++| .+ ++++.+++++.+|++.|. ++++++||+++.+
T Consensus 84 --------~~~~v~~~m-~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g------------------------- 126 (153)
T 3oco_A 84 --------DKAKISTIM-RD---IVSVPENMKVPDVMEEMSAHRVPMAIVIDEYG------------------------- 126 (153)
T ss_dssp --------TTSBGGGTC-BC---CEEEETTSBHHHHHHHHHHTTCSCEEEECTTS-------------------------
T ss_pred --------CCCcHHHHh-CC---CeEECCCCCHHHHHHHHHHcCCcEEEEEeCCC-------------------------
Confidence 157899999 54 899999999999999999 7899999986532
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++||||..|+++++.+
T Consensus 127 ---------------------~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 127 ---------------------GTSGIITDKDVYEELFG 143 (153)
T ss_dssp ---------------------CEEEEECHHHHHHHHHC
T ss_pred ---------------------CEEEEeeHHHHHHHHhc
Confidence 46899999999999964
No 50
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.64 E-value=5.6e-16 Score=134.11 Aligned_cols=123 Identities=12% Similarity=0.095 Sum_probs=98.3
Q ss_pred CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939 211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV 289 (433)
Q Consensus 211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~ 289 (433)
.++++ +|+++++++.+++++.+|+++|.+ +++.+||+|+ +|.++++|+||.+||+.....
T Consensus 5 ~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~~~~Givt~~dl~~~~~~--------------- 65 (141)
T 2rih_A 5 IRTSE--LLKRPPVSLPETATIREVATELAKNRVGLAVLTAR--DNPKRPVAVVSERDILRAVAQ--------------- 65 (141)
T ss_dssp CBGGG--GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEEEEHHHHHHHHHT---------------
T ss_pred eEHHH--HhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC--CCcceeEEEEEHHHHHHHHhc---------------
Confidence 45665 688999999999999999999999 9999999996 321279999999999864200
Q ss_pred hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939 290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~ 369 (433)
+. .+ . ..+ + ..|..++++|+++
T Consensus 66 ----~~-~~---------------~---------------~~v-----------------~-----~~m~~~~~~v~~~- 87 (141)
T 2rih_A 66 ----RL-DL---------------D---------------GPA-----------------M-----PIANSPITVLDTD- 87 (141)
T ss_dssp ----TC-CT---------------T---------------SBS-----------------G-----GGCBCCCEEETTS-
T ss_pred ----CC-CC---------------C---------------CCH-----------------H-----HHcCCCCeEEcCC-
Confidence 00 00 0 001 0 2257799999999
Q ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
++.+|+.+|.+++++++||+|++ |+++||||+.||++++..
T Consensus 88 ~l~~a~~~m~~~~~~~l~Vvd~~--g~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 88 PVHVAAEKMRRHNIRHVVVVNKN--GELVGVLSIRDLCFERAI 128 (141)
T ss_dssp BHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHSCHHH
T ss_pred CHHHHHHHHHHcCCeEEEEEcCC--CcEEEEEEHHHHHHHHHH
Confidence 99999999999999999999987 999999999999876654
No 51
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.64 E-value=1.5e-16 Score=135.98 Aligned_cols=124 Identities=17% Similarity=0.229 Sum_probs=98.5
Q ss_pred CCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhh-cchhHHHHHHhhccch
Q 013939 209 PLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWK-CDYLAAAWALANLSAG 286 (433)
Q Consensus 209 ~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~-~~~~~~~~~~~~l~~~ 286 (433)
...++++ +|.++++++.+++++.+|+++|.+ +++++||+|+ +| +++|+||.+|++. +....
T Consensus 6 ~~~~v~~--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~Givt~~dl~~~~~~~~----------- 68 (133)
T 1y5h_A 6 TMTTARD--IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD--DD--RLHGMLTDRDIVIKGLAAG----------- 68 (133)
T ss_dssp --CCHHH--HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG--GG--BEEEEEEHHHHHHTTGGGT-----------
T ss_pred hhcCHHH--HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC--CC--eEEEEEeHHHHHHHHHhcC-----------
Confidence 3456665 688899999999999999999999 9999999987 78 9999999999973 32000
Q ss_pred hhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEec
Q 013939 287 QFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCK 366 (433)
Q Consensus 287 ~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 366 (433)
. .+ .. . .+ + ..|..++++|+
T Consensus 69 --------~-~~---~~---------~-----------------~v-----------------~-----~~m~~~~~~v~ 88 (133)
T 1y5h_A 69 --------L-DP---NT---------A-----------------TA-----------------G-----ELARDSIYYVD 88 (133)
T ss_dssp --------C-CT---TT---------S-----------------BH-----------------H-----HHHTTCCCCEE
T ss_pred --------C-Cc---cc---------c-----------------CH-----------------H-----HHhcCCCEEEC
Confidence 0 00 00 0 00 0 22567899999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 367 ITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 367 p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
+++++.+++.+|.+++++++||+|+ |+++|+||+.||++++..
T Consensus 89 ~~~~l~~~~~~m~~~~~~~l~Vvd~---g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 89 ANASIQEMLNVMEEHQVRRVPVISE---HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEEET---TEEEEEEEHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEEC---CEEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999997 799999999999998754
No 52
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.64 E-value=8e-16 Score=137.20 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=110.6
Q ss_pred cccchhHhhhhcCC-CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC
Q 013939 4 VFIYHVVGDLTVGK-PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS 82 (433)
Q Consensus 4 ~~~~~~v~DL~~~k-~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~ 82 (433)
++..-+|+|+|..+ .+++++++++|+.+|++.|.++++.++||+|.+ ++++|+||..||++++...
T Consensus 20 ~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~ 86 (165)
T 3fhm_A 20 QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-------------GVVLGIFTERDLVKAVAGQ 86 (165)
T ss_dssp SSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHHHHH
T ss_pred hhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-------------CeEEEEEEHHHHHHHHHhc
Confidence 45677899999743 578999999999999999999999999999963 7999999999999987643
Q ss_pred CCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccC
Q 013939 83 DCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASN 161 (433)
Q Consensus 83 ~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 161 (433)
. ......+|+++|..+ ++++++++++.+|++.|. ++++++||+++ +
T Consensus 87 ~-----~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g------------------------ 133 (165)
T 3fhm_A 87 G-----AASLQQSVSVAMTKN---VVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-G------------------------ 133 (165)
T ss_dssp G-----GGGGTSBGGGTSBSS---CCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T------------------------
T ss_pred C-----CccccCCHHHHhcCC---CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C------------------------
Confidence 1 123468999999865 899999999999999999 79999999876 3
Q ss_pred ccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 162 SSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++|+||..||++++.+
T Consensus 134 ----------------------~~~Giit~~dil~~~~~ 150 (165)
T 3fhm_A 134 ----------------------RLAGIISIGDVVKARIG 150 (165)
T ss_dssp ----------------------EEEEEEEHHHHHHHTTC
T ss_pred ----------------------EEEEEEEHHHHHHHHHH
Confidence 35899999999999864
No 53
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.64 E-value=1e-15 Score=137.99 Aligned_cols=126 Identities=15% Similarity=0.233 Sum_probs=105.7
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+ .++++|+||..||+.++.+.
T Consensus 38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~dl~~~~~~~- 104 (172)
T 3lhh_A 38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN------------VDDMVGIISAKQLLSESIAG- 104 (172)
T ss_dssp -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS------------TTSEEEEEEHHHHHHHHHTT-
T ss_pred ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC------------CCeEEEEEEHHHHHHHHhhc-
Confidence 45667899999755678999999999999999999999999999853 16999999999999987543
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
.+.+|+++| ++ ++++.+++++.+|++.|. ++++++||+++.+
T Consensus 105 --------~~~~v~~im-~~---~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g------------------------- 147 (172)
T 3lhh_A 105 --------ERLELVDLV-KN---CNFVPNSLSGMELLEHFRTTGSQMVFVVDEYG------------------------- 147 (172)
T ss_dssp --------CCCCGGGGC-BC---CEEEETTCCHHHHHHHHHHHTCSEEEEECTTS-------------------------
T ss_pred --------CcccHHHHh-cC---CeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCC-------------------------
Confidence 147899999 54 899999999999999999 7999999986532
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++||||..|+++.+.+
T Consensus 148 ---------------------~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 148 ---------------------DLKGLVTLQDMMDALTG 164 (172)
T ss_dssp ---------------------CEEEEEEHHHHHHHHHT
T ss_pred ---------------------CEEEEeeHHHHHHHHhC
Confidence 46899999999999864
No 54
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.64 E-value=1.3e-15 Score=142.47 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=99.9
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
+|.++++++.+++++.+|+++|.+ +++++||+|+ +| +++|+||.+|++.... .
T Consensus 18 ~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~--~l~Givt~~dl~~~~~--------~-------------- 71 (213)
T 1vr9_A 18 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR--EG--HFRGVVNKEDLLDLDL--------D-------------- 71 (213)
T ss_dssp GCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT--TS--BEEEEEEGGGGTTSCT--------T--------------
T ss_pred hhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC--CC--EEEEEEEHHHHHhhcC--------C--------------
Confidence 688999999999999999999999 9999999997 78 9999999999976530 0
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA 376 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~ 376 (433)
. .+ + ..|..++++|++++++.+|+.
T Consensus 72 ----------------~-----------------~v-----------------~-----~im~~~~~~v~~~~~l~~a~~ 96 (213)
T 1vr9_A 72 ----------------S-----------------SV-----------------F-----NKVSLPDFFVHEEDNITHALL 96 (213)
T ss_dssp ----------------S-----------------BS-----------------G-----GGCBCTTCCEETTSBHHHHHH
T ss_pred ----------------C-----------------cH-----------------H-----HHccCCCEEECCCCcHHHHHH
Confidence 0 00 0 225778999999999999999
Q ss_pred HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+|.+++++++||+|++ |+++||||..||++++.....
T Consensus 97 ~m~~~~~~~lpVvd~~--g~lvGiit~~Dil~~~~~~~~ 133 (213)
T 1vr9_A 97 LFLEHQEPYLPVVDEE--MRLKGAVSLHDFLEALIEALA 133 (213)
T ss_dssp HHHHCCCSEEEEECTT--CBEEEEEEHHHHHHHHHHSCC
T ss_pred HHHHhCCCEEEEEcCC--CEEEEEEEHHHHHHHHHHHhc
Confidence 9999999999999987 899999999999999986543
No 55
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.64 E-value=7.4e-16 Score=129.78 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=95.5
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
+|+++++++.+++++.+|+++|.+ +++.+||+| +| +++|+||.+|++...... .
T Consensus 6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~--~~~G~it~~dl~~~~~~~-------------------~- 60 (125)
T 1pbj_A 6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK---EG--VRVGIVTTWDVLEAIAEG-------------------D- 60 (125)
T ss_dssp HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE---TT--EEEEEEEHHHHHHHHHHT-------------------C-
T ss_pred hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe---CC--eeEEEEeHHHHHHHHhcC-------------------C-
Confidence 688899999999999999999999 999999999 47 999999999998643100 0
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA 376 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~ 376 (433)
.+.. . .+ + ..|..++++|.+++++.+++.
T Consensus 61 ---~~~~---------~-----------------~v-----------------~-----~~m~~~~~~v~~~~~l~~~~~ 89 (125)
T 1pbj_A 61 ---DLAE---------V-----------------KV-----------------W-----EVMERDLVTISPRATIKEAAE 89 (125)
T ss_dssp ---CTTT---------S-----------------BH-----------------H-----HHCBCGGGEECTTSCHHHHHH
T ss_pred ---cccc---------c-----------------CH-----------------H-----HHcCCCCeEECCCCCHHHHHH
Confidence 0000 0 00 0 225678999999999999999
Q ss_pred HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+|.+++++++||+|+ |+++|+||..||++++.++
T Consensus 90 ~~~~~~~~~l~Vvd~---~~~~Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 90 KMVKNVVWRLLVEED---DEIIGVISATDILRAKMAK 123 (125)
T ss_dssp HHHHHTCSEEEEEET---TEEEEEEEHHHHHHHHC--
T ss_pred HHHhcCCcEEEEEEC---CEEEEEEEHHHHHHHHHhc
Confidence 999999999999997 7999999999999998765
No 56
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.63 E-value=6.6e-16 Score=132.49 Aligned_cols=122 Identities=15% Similarity=0.277 Sum_probs=97.8
Q ss_pred CcccccCcC---CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchh
Q 013939 212 SISSLGVIN---PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQ 287 (433)
Q Consensus 212 tV~~L~im~---~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~ 287 (433)
++++ +|+ ++++++.+++++.+|+++|.+ +++++||+| +| +++|+||.+|+++.... .
T Consensus 7 ~v~~--im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~--~~~Givt~~dl~~~~~~-------~----- 67 (135)
T 2rc3_A 7 TVKH--LLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK---DE--KLVGILTERDFSRKSYL-------L----- 67 (135)
T ss_dssp BHHH--HHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE---TT--EEEEEEEHHHHHHHGGG-------S-----
T ss_pred eHHH--HHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE---CC--EEEEEEehHHHHHHHHH-------c-----
Confidence 4555 587 789999999999999999999 999999998 47 99999999999752200 0
Q ss_pred hhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC
Q 013939 288 FVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI 367 (433)
Q Consensus 288 f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p 367 (433)
+. .. .. ..+ + ..|..++++|++
T Consensus 68 ------~~----~~-----------~~---------------~~v-----------------~-----~~m~~~~~~v~~ 89 (135)
T 2rc3_A 68 ------DK----PV-----------KD---------------TQV-----------------K-----EIMTRQVAYVDL 89 (135)
T ss_dssp ------SS----CG-----------GG---------------SBG-----------------G-----GTSBCSCCCBCT
T ss_pred ------CC----Cc-----------cc---------------CCH-----------------H-----HhccCCCeEECC
Confidence 00 00 00 001 0 235778999999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 368 TSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 368 ~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
++++.+++.+|.+++++++||+| + |+++||||..||++++..+
T Consensus 90 ~~~l~~~~~~m~~~~~~~lpVvd-~--g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 90 NNTNEDCMALITEMRVRHLPVLD-D--GKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp TCBHHHHHHHHHHHTCSEEEEEE-T--TEEEEEEEHHHHHHHHHC-
T ss_pred CCcHHHHHHHHHHhCCCEEEEEe-C--CEEEEEEEHHHHHHHHHhc
Confidence 99999999999999999999999 5 8999999999999998764
No 57
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.63 E-value=6.1e-16 Score=140.56 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=101.4
Q ss_pred CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhh
Q 013939 211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFV 289 (433)
Q Consensus 211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~ 289 (433)
.++++ +|+++++++.+++++.+|+++|.+ +++.+||+|+ +| +++|+||.+||+......
T Consensus 9 ~~v~~--im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~--~g--~~vGivt~~dl~~~~~~~-------------- 68 (184)
T 1pvm_A 9 MRVEK--IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD--NG--NDVGLLSERSIIKRFIPR-------------- 68 (184)
T ss_dssp CBGGG--TSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT--TS--CEEEEEEHHHHHHHTGGG--------------
T ss_pred cCHHH--hcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC--CC--cEEEEEeHHHHHHHHhhc--------------
Confidence 56665 688999999999999999999999 9999999997 78 999999999997643000
Q ss_pred hccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCC
Q 013939 290 MGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITS 369 (433)
Q Consensus 290 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~ 369 (433)
... ... ..+ + ..|..+++++++++
T Consensus 69 -----~~~--------------~~~---------------~~v-----------------~-----~im~~~~~~v~~~~ 92 (184)
T 1pvm_A 69 -----NKK--------------PDE---------------VPI-----------------R-----LVMRKPIPKVKSDY 92 (184)
T ss_dssp -----CCC--------------GGG---------------SBG-----------------G-----GTSBSSCCEEETTC
T ss_pred -----ccC--------------ccc---------------CCH-----------------H-----HHhCCCCcEECCCC
Confidence 000 000 000 0 22577899999999
Q ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 370 SLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 370 sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
++.+|+.+|.+++++++||+|++ |+++||||..||++++..
T Consensus 93 ~l~~a~~~m~~~~~~~lpVvd~~--g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 93 DVKDVAAYLSENGLERCAVVDDP--GRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp BHHHHHHHHHHHTCSEEEEECTT--CCEEEEEEHHHHTTTSCH
T ss_pred CHHHHHHHHHHcCCcEEEEEcCC--CeEEEEEEHHHHHHHHHh
Confidence 99999999999999999999997 999999999999988765
No 58
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.63 E-value=8.4e-16 Score=135.24 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=110.3
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~ 84 (433)
|...+++|+|...++++++++++|+.+|+++|.+++++++||+|.+ ++++|+||..||+.++.....
T Consensus 12 l~~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Giit~~dl~~~~~~~~~ 78 (156)
T 3ctu_A 12 FLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-------------KQFVGTIGLRDIMAYQMEHDL 78 (156)
T ss_dssp HHHTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC--------------CBEEEEEEHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCC-------------CEEEEEEcHHHHHHHHHhccc
Confidence 4556789999765789999999999999999999999999999963 799999999999998864211
Q ss_pred cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHHcCCCeEEeeecCcccccccchhhhccccccccccccCccc
Q 013939 85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSS 164 (433)
Q Consensus 85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 164 (433)
. .....+.+|+++|..+ ++++.+++++.+|++.|.+. +++||++++
T Consensus 79 ~--~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~~~~~-~~lpVvd~~---------------------------- 124 (156)
T 3ctu_A 79 S--QEIMADTDIVHMTKTD---VAVVSPDFTITEVLHKLVDE-SFLPVVDAE---------------------------- 124 (156)
T ss_dssp C--HHHHTTSBGGGGCBCS---CCCBCSSCCHHHHHHHTTTS-SEEEEECTT----------------------------
T ss_pred c--ccccccCcHHHhccCC---ceeeCCCCcHHHHHHHHHHc-CeEEEEcCC----------------------------
Confidence 1 1233468999999865 89999999999999999843 378887643
Q ss_pred cccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCC
Q 013939 165 NNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGAL 205 (433)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l 205 (433)
|+++|+||..|+++++.+....+
T Consensus 125 ------------------g~~~Giit~~dil~~l~~~~~~~ 147 (156)
T 3ctu_A 125 ------------------GIFQGIITRKSILKAVNALLHDF 147 (156)
T ss_dssp ------------------SBEEEEEETTHHHHHHHHHSCC-
T ss_pred ------------------CeEEEEEEHHHHHHHHHHHHHhh
Confidence 25689999999999998755443
No 59
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.63 E-value=2.9e-15 Score=126.15 Aligned_cols=120 Identities=24% Similarity=0.325 Sum_probs=103.4
Q ss_pred hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939 9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ 88 (433)
Q Consensus 9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~ 88 (433)
+|+|+|. ++++++++++++.+|++.|.+++++++||+| + ++++|+|+..|+++++.++..
T Consensus 2 ~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-------------~~~~G~it~~dl~~~~~~~~~---- 61 (125)
T 1pbj_A 2 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-------------GVRVGIVTTWDVLEAIAEGDD---- 61 (125)
T ss_dssp CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-------------TEEEEEEEHHHHHHHHHHTCC----
T ss_pred CHHHhcC--CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-------------CeeEEEEeHHHHHHHHhcCCc----
Confidence 5789886 5789999999999999999999999999999 4 799999999999988765321
Q ss_pred HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939 89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL 167 (433)
Q Consensus 89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 167 (433)
..+.+|+++|.++ ++++++++++.+|++.|. ++++++||.++ +
T Consensus 62 --~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~------------------------------ 105 (125)
T 1pbj_A 62 --LAEVKVWEVMERD---LVTISPRATIKEAAEKMVKNVVWRLLVEED-D------------------------------ 105 (125)
T ss_dssp --TTTSBHHHHCBCG---GGEECTTSCHHHHHHHHHHHTCSEEEEEET-T------------------------------
T ss_pred --ccccCHHHHcCCC---CeEECCCCCHHHHHHHHHhcCCcEEEEEEC-C------------------------------
Confidence 1257899999864 999999999999999999 89999999865 2
Q ss_pred ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+.+|+||..|+++++.+
T Consensus 106 ----------------~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 106 ----------------EIIGVISATDILRAKMA 122 (125)
T ss_dssp ----------------EEEEEEEHHHHHHHHC-
T ss_pred ----------------EEEEEEEHHHHHHHHHh
Confidence 35899999999999854
No 60
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.63 E-value=5.6e-16 Score=132.17 Aligned_cols=122 Identities=18% Similarity=0.296 Sum_probs=102.9
Q ss_pred hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939 8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED 87 (433)
Q Consensus 8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~ 87 (433)
.+|+|+|....+++++++++|+.+|++.|.+++++++||+|.+ .++++|+||..|+++++...
T Consensus 3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~------------~~~~vGivt~~dl~~~~~~~----- 65 (127)
T 3nqr_A 3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED------------KDHIEGILMAKDLLPFMRSD----- 65 (127)
T ss_dssp CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------TTCEEEEEEGGGGGGGGSTT-----
T ss_pred cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHhcc-----
Confidence 4689999744568999999999999999999999999999863 26999999999999876532
Q ss_pred HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939 88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN 166 (433)
Q Consensus 88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 166 (433)
..+.+|+++|.. ++++.+++++.+|++.|. ++++++||+++++
T Consensus 66 ---~~~~~v~~~m~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g----------------------------- 109 (127)
T 3nqr_A 66 ---AEAFSMDKVLRT----AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG----------------------------- 109 (127)
T ss_dssp ---CCCCCHHHHCBC----CCEEETTCBHHHHHHHHHHTTCCEEEEECTTS-----------------------------
T ss_pred ---CCCCCHHHHcCC----CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-----------------------------
Confidence 124789999953 678999999999999999 7899999986432
Q ss_pred cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939 167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLI 199 (433)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~ 199 (433)
+++||||+.|+++.+.
T Consensus 110 -----------------~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 110 -----------------GVSGLVTIEDILELIV 125 (127)
T ss_dssp -----------------CEEEEEEHHHHHHHC-
T ss_pred -----------------CEEEEEEHHHHHHHHh
Confidence 4689999999999874
No 61
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.63 E-value=1.2e-15 Score=134.02 Aligned_cols=133 Identities=17% Similarity=0.168 Sum_probs=102.7
Q ss_pred CCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939 208 LPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS 284 (433)
Q Consensus 208 l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~ 284 (433)
+...++++ +|.+ +++++.+++++.+|+++|.+ +++++||+|+ +| +++|+||.+|++......
T Consensus 8 l~~~~v~~--im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~--~~~Givt~~dl~~~~~~~--------- 72 (157)
T 2emq_A 8 FMQMTVKP--FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT--SY--KLHGLISMTMMMDAILGL--------- 72 (157)
T ss_dssp --CCBSTT--TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT--TC--CEEEEEEHHHHHHHSBCS---------
T ss_pred HhhCcHHh--hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC--CC--CEEEEeeHHHHHHHHhcc---------
Confidence 44556665 6886 89999999999999999999 9999999997 78 999999999998653100
Q ss_pred chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939 285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT 364 (433)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 364 (433)
..| . . ..... ..+ + ..|..++++
T Consensus 73 -~~~----~---------~---------~~~~~------------~~v-----------------~-----~~m~~~~~~ 95 (157)
T 2emq_A 73 -ERI----E---------F---------ERLET------------MKV-----------------E-----EVMNRNIPR 95 (157)
T ss_dssp -SSB----C---------G---------GGGGT------------CBG-----------------G-----GTCBCCCCE
T ss_pred -ccc----c---------h---------HHhcC------------CcH-----------------H-----HHhCCCCce
Confidence 000 0 0 00000 001 0 235779999
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCC
Q 013939 365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAA 416 (433)
Q Consensus 365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~ 416 (433)
|++++++.+|+.+|.++++ +||||++ |+++||||..||++++......
T Consensus 96 v~~~~~l~~a~~~m~~~~~--l~Vvd~~--g~~~Giit~~dil~~~~~~~~~ 143 (157)
T 2emq_A 96 LRLDDSLMKAVGLIVNHPF--VCVENDD--GYFAGIFTRREVLKQLNKQLHR 143 (157)
T ss_dssp EETTSBHHHHHHHHHHSSE--EEEECSS--SSEEEEEEHHHHHHHHHHTTCC
T ss_pred ecCCCcHHHHHHHHhhCCE--EEEEcCC--CeEEEEEEHHHHHHHHHHHhhc
Confidence 9999999999999999988 9999987 9999999999999999887553
No 62
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.63 E-value=4.7e-16 Score=134.56 Aligned_cols=124 Identities=19% Similarity=0.269 Sum_probs=104.3
Q ss_pred hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939 8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED 87 (433)
Q Consensus 8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~ 87 (433)
.+|+|+|...++++++++++|+.+|+++|.+++++++||+|.+ .++++|+||..||++++.+..
T Consensus 3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~------------~~~~vGivt~~dl~~~~~~~~---- 66 (136)
T 3lfr_A 3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGES------------HDDVLGVLLAKDLLPLILKAD---- 66 (136)
T ss_dssp CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------TTCEEEEEEGGGGGGGGGSSS----
T ss_pred CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHHhcc----
Confidence 4789999755678999999999999999999999999999863 269999999999998875321
Q ss_pred HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939 88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN 166 (433)
Q Consensus 88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 166 (433)
..+.+|+++|.. ++++.+++++.+|++.|. ++++++||+++++
T Consensus 67 ---~~~~~v~~~m~~----~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g----------------------------- 110 (136)
T 3lfr_A 67 ---GDSDDVKKLLRP----ATFVPESKRLNVLLREFRANHNHMAIVIDEYG----------------------------- 110 (136)
T ss_dssp ---GGGCCGGGTCBC----CCEEETTCBHHHHHHHHHHHTCCEEEEECTTS-----------------------------
T ss_pred ---CCCcCHHHHcCC----CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-----------------------------
Confidence 124789999962 789999999999999999 8999999986532
Q ss_pred cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++||||..|+++.+.+
T Consensus 111 -----------------~lvGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 111 -----------------GVAGLVTIEDVLEQIVG 127 (136)
T ss_dssp -----------------CEEEEEEHHHHHTTC--
T ss_pred -----------------CEEEEEEHHHHHHHHhC
Confidence 46899999999997753
No 63
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.63 E-value=8.2e-16 Score=133.39 Aligned_cols=131 Identities=24% Similarity=0.338 Sum_probs=105.2
Q ss_pred hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939 8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED 87 (433)
Q Consensus 8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~ 87 (433)
.+|+|+|....+++++++++++.+|++.|.++++.++||+|.+ ++++|+||..||+.++..+.....
T Consensus 5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~G~vt~~dl~~~~~~~~~~~~ 71 (152)
T 4gqw_A 5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-------------WKLVGLVSDYDLLALDSGDSTWKT 71 (152)
T ss_dssp SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-------------CBEEEEEEHHHHTTCC----CCHH
T ss_pred EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-------------CeEEEEEEHHHHHHhhcccCcccc
Confidence 5689999754589999999999999999999999999999963 799999999999876543211110
Q ss_pred H-------HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccc
Q 013939 88 Q-------DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA 159 (433)
Q Consensus 88 ~-------~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~ 159 (433)
. ....+.+|+++|..+ ++++++++++.+|++.|. ++++++||+++++
T Consensus 72 ~~~~~~~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g---------------------- 126 (152)
T 4gqw_A 72 FNAVQKLLSKTNGKLVGDLMTPA---PLVVEEKTNLEDAAKILLETKYRRLPVVDSDG---------------------- 126 (152)
T ss_dssp HHHHHTC-----CCBHHHHSEES---CCCEESSSBHHHHHHHHHHSSCCEEEEECTTS----------------------
T ss_pred hHHHHHHHHHhccccHHHhcCCC---ceEECCCCcHHHHHHHHHHCCCCEEEEECCCC----------------------
Confidence 0 122357999999865 889999999999999999 7899999986432
Q ss_pred cCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 160 SNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++|+||..||++++.+
T Consensus 127 ------------------------~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 127 ------------------------KLVGIITRGNVVRAALQ 143 (152)
T ss_dssp ------------------------BEEEEEEHHHHHHHHHC
T ss_pred ------------------------cEEEEEEHHHHHHHHHh
Confidence 46899999999999975
No 64
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.63 E-value=7.3e-16 Score=135.62 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=100.0
Q ss_pred CCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchh
Q 013939 211 SSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQ 287 (433)
Q Consensus 211 ~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~ 287 (433)
.++++ +|+ ++++++.+++++.+|+++|.+ +++++||+|+ +| +++|+||.+|++...... ......
T Consensus 15 ~~v~d--im~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~--~~--~~~Giit~~dl~~~~~~~------~~~~~~ 82 (156)
T 3ctu_A 15 GQEET--FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD--EK--QFVGTIGLRDIMAYQMEH------DLSQEI 82 (156)
T ss_dssp TTGGG--GEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC---C--BEEEEEEHHHHHHHHHHH------TCCHHH
T ss_pred HHHHH--HcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECC--CC--EEEEEEcHHHHHHHHHhc------cccccc
Confidence 45665 688 679999999999999999999 9999999997 78 999999999998764110 000000
Q ss_pred hhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC
Q 013939 288 FVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI 367 (433)
Q Consensus 288 f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p 367 (433)
+ .. ..+ + ..|..++++|++
T Consensus 83 ~------------------------~~---------------~~v-----------------~-----~~m~~~~~~v~~ 101 (156)
T 3ctu_A 83 M------------------------AD---------------TDI-----------------V-----HMTKTDVAVVSP 101 (156)
T ss_dssp H------------------------TT---------------SBG-----------------G-----GGCBCSCCCBCS
T ss_pred c------------------------cc---------------CcH-----------------H-----HhccCCceeeCC
Confidence 0 00 001 0 225778999999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 368 TSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 368 ~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
++++.+|+.+|.+++ ++||||++ |+++||||.+||++++.+.-.
T Consensus 102 ~~~l~~a~~~~~~~~--~lpVvd~~--g~~~Giit~~dil~~l~~~~~ 145 (156)
T 3ctu_A 102 DFTITEVLHKLVDES--FLPVVDAE--GIFQGIITRKSILKAVNALLH 145 (156)
T ss_dssp SCCHHHHHHHTTTSS--EEEEECTT--SBEEEEEETTHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHcC--eEEEEcCC--CeEEEEEEHHHHHHHHHHHHH
Confidence 999999999999986 79999987 999999999999999987544
No 65
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.62 E-value=2.3e-15 Score=133.35 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=108.2
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|...+|+|+|. + .+++++++++.+|+++|.+++++++||+|.+ ++++|+||..||+.++....
T Consensus 13 ~l~~~~v~~im~--~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~ 76 (159)
T 3fv6_A 13 KLKKLQVKDFQS--I-PVVIHENVSVYDAICTMFLEDVGTLFVVDRD-------------AVLVGVLSRKDLLRASIGQQ 76 (159)
T ss_dssp HHTTCBGGGSCB--C-CCEEETTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHHTSCS
T ss_pred HHhhCCHHHHcC--C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCC-------------CcEEEEEeHHHHHHHhhccC
Confidence 345568999986 3 3599999999999999999999999999963 79999999999999875431
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
. ..+.+|+++|... .+++++++++++.+|++.|. ++++++||+++++.
T Consensus 77 ~------~~~~~v~~~m~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~------------------------ 125 (159)
T 3fv6_A 77 E------LTSVPVHIIMTRM-PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDK------------------------ 125 (159)
T ss_dssp C------TTTCBGGGTSEET-TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSS------------------------
T ss_pred c------ccCcCHHHHHcCC-CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCc------------------------
Confidence 1 2357999999861 13899999999999999999 89999999875320
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC 201 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~ 201 (433)
..+++|+||+.||++++.+-
T Consensus 126 -------------------~~~~vGiit~~dil~~l~~~ 145 (159)
T 3fv6_A 126 -------------------GFEVIGRVTKTNMTKILVSL 145 (159)
T ss_dssp -------------------SEEEEEEEEHHHHHHHHHHH
T ss_pred -------------------ceeEEEEEEHHHHHHHHHHH
Confidence 01468999999999999763
No 66
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.62 E-value=8e-16 Score=134.29 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=100.1
Q ss_pred CCcccccCcC--CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchh
Q 013939 211 SSISSLGVIN--PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQ 287 (433)
Q Consensus 211 ~tV~~L~im~--~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~ 287 (433)
.++++ +|+ .+++++.+++++.+|++.|.+ +++.+||+|+ +| +++|+||.+||+.....
T Consensus 15 ~~v~~--im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~--~~--~~~Givt~~dl~~~~~~------------- 75 (150)
T 3lqn_A 15 IFVKD--LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP--MY--KLHGLISTAMILDGILG------------- 75 (150)
T ss_dssp CBHHH--HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT--TC--BEEEEEEHHHHHHHTBC-------------
T ss_pred CChhh--cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC--CC--CEEEEEEHHHHHHHHHh-------------
Confidence 45665 588 469999999999999999999 9999999998 78 99999999999865310
Q ss_pred hhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecC
Q 013939 288 FVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKI 367 (433)
Q Consensus 288 f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p 367 (433)
..+ +. ...... ..+ + ..|..++++|++
T Consensus 76 ------~~~----~~---------~~~~~~------------~~v-----------------~-----~~m~~~~~~v~~ 102 (150)
T 3lqn_A 76 ------LER----IE---------FERLEE------------MKV-----------------E-----QVMKQDIPVLKL 102 (150)
T ss_dssp ------SSS----BC---------GGGGGG------------CBG-----------------G-----GTCBSSCCEEET
T ss_pred ------hcc----cc---------hhHHhc------------CCH-----------------H-----HHhcCCCceeCC
Confidence 000 00 000000 011 0 335778999999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939 368 TSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP 414 (433)
Q Consensus 368 ~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~ 414 (433)
++++.+|+.+|.++++ +||||++ |+++||||..||++++.+.-
T Consensus 103 ~~~l~~a~~~~~~~~~--l~Vvd~~--g~~~Giit~~dil~~l~~~~ 145 (150)
T 3lqn_A 103 EDSFAKALEMTIDHPF--ICAVNED--GYFEGILTRRAILKLLNKKV 145 (150)
T ss_dssp TCBHHHHHHHHHHCSE--EEEECTT--CBEEEEEEHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhCCE--EEEECCC--CcEEEEEEHHHHHHHHHHHh
Confidence 9999999999999997 9999987 99999999999999998753
No 67
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.62 E-value=2.5e-15 Score=140.39 Aligned_cols=119 Identities=12% Similarity=0.132 Sum_probs=101.4
Q ss_pred CCCCcccccCcCCCeEEEcCCCcHHHHHHhccc----CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939 209 PLSSISSLGVINPNYSSIEASVPAIEATLKAPG----DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS 284 (433)
Q Consensus 209 ~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~----~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~ 284 (433)
...++++ +|+++++++.+++++.+|++.|.+ +++.+||||+ +| +++|+||.+||+... ..
T Consensus 52 ~~~~v~~--iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~--~~--~lvGivt~~dll~~~--------~~-- 115 (205)
T 3kxr_A 52 SENEIGR--YTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE--AD--KYLGTVRRYDIFKHE--------PH-- 115 (205)
T ss_dssp CTTCGGG--GCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT--TC--BEEEEEEHHHHTTSC--------TT--
T ss_pred CcchHHh--hccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC--CC--eEEEEEEHHHHHhCC--------Cc--
Confidence 4556776 699999999999999999999986 5788999998 78 999999999987532 00
Q ss_pred chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeE
Q 013939 285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLT 364 (433)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it 364 (433)
. .+ + ..|.+++++
T Consensus 116 ----------------------------~-----------------~v-----------------~-----~im~~~~~~ 128 (205)
T 3kxr_A 116 ----------------------------E-----------------PL-----------------I-----SLLSEDSRA 128 (205)
T ss_dssp ----------------------------S-----------------BG-----------------G-----GGCCSSCCC
T ss_pred ----------------------------c-----------------hH-----------------H-----HHhcCCCeE
Confidence 0 00 0 225778999
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 365 CKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 365 ~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
|++++++.+|+.+|.+++++++||||++ |+++||||..||++.+..
T Consensus 129 v~~~~~l~~a~~~m~~~~~~~lpVVD~~--g~lvGiIT~~Dil~~i~~ 174 (205)
T 3kxr_A 129 LTANTTLLDAAEAIEHSREIELPVIDDA--GELIGRVTLRAATALVRE 174 (205)
T ss_dssp EETTSCHHHHHHHHHTSSCSEEEEECTT--SBEEEEEEHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHhcCCCEEEEEcCC--CeEEEEEEHHHHHHHHHH
Confidence 9999999999999999999999999998 999999999999999976
No 68
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.62 E-value=2.8e-15 Score=128.61 Aligned_cols=128 Identities=17% Similarity=0.289 Sum_probs=106.6
Q ss_pred cccccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHH-HHHhh
Q 013939 2 ASVFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDI-VAFLA 80 (433)
Q Consensus 2 ~~~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DI-l~~l~ 80 (433)
--.|...+++|+|. ++++++++++++.+|++.|.++++.++||+|.+ ++++|+|+..|+ +.++.
T Consensus 2 ~~~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~ 66 (138)
T 2p9m_A 2 IDTLKNIKVKDVMT--KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-------------NKVIGIVTTTDIGYNLIR 66 (138)
T ss_dssp ---CTTCBGGGTSB--CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-------------CBEEEEEEHHHHHHHHTT
T ss_pred ccccccCCHHHhhc--CCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-------------CeEEEEEEHHHHHHHHHh
Confidence 34567788999985 678999999999999999999999999999863 799999999999 88775
Q ss_pred cCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cC-----CCeEEeeecCcccccccchhhhcccccc
Q 013939 81 KSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QG-----VRRLLVPKSVVWKGMSKRFSILYNGKWL 154 (433)
Q Consensus 81 ~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~g-----i~rl~V~~~~~~~~~~~~~~~~~~g~~l 154 (433)
... ..+.+|+++|..+ ++++++++++.+|++.|. ++ ++++||+++++
T Consensus 67 ~~~-------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g----------------- 119 (138)
T 2p9m_A 67 DKY-------TLETTIGDVMTKD---VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNN----------------- 119 (138)
T ss_dssp TCC-------CSSCBHHHHSCSS---CCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTS-----------------
T ss_pred hcc-------cCCcCHHHHhCCC---cEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCC-----------------
Confidence 421 1257899999864 899999999999999999 78 99999986432
Q ss_pred ccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 155 KNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+.+|+||..|+++++.+
T Consensus 120 -----------------------------~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 120 -----------------------------KLVGIISDGDIIRTISK 136 (138)
T ss_dssp -----------------------------BEEEEEEHHHHHHHHHH
T ss_pred -----------------------------eEEEEEEHHHHHHHHHh
Confidence 46899999999999865
No 69
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.62 E-value=4.7e-15 Score=128.26 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=89.4
Q ss_pred hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCC--eEEEEEeHHHHHHHhhcCCCc
Q 013939 8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQ--RFVGILNSFDIVAFLAKSDCL 85 (433)
Q Consensus 8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~--~~VGivt~~DIl~~l~~~~~l 85 (433)
.+|+|+|. ++++++++++|+.+|++.|.+++++++||+|.+ + +++|+||..||+.++.+...
T Consensus 5 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~~~Givt~~dl~~~~~~~~~- 68 (141)
T 2rih_A 5 IRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARD-------------NPKRPVAVVSERDILRAVAQRLD- 68 (141)
T ss_dssp CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-------------EEEEEEEEEEHHHHHHHHHTTCC-
T ss_pred eEHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CcceeEEEEEHHHHHHHHhcCCC-
Confidence 46899985 678999999999999999999999999999963 5 89999999999998765311
Q ss_pred chHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 86 EDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 86 ~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
.+.+|+++|.++ +++++++ ++.+|++.|. ++++++||+++
T Consensus 69 ------~~~~v~~~m~~~---~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~ 109 (141)
T 2rih_A 69 ------LDGPAMPIANSP---ITVLDTD-PVHVAAEKMRRHNIRHVVVVNK 109 (141)
T ss_dssp ------TTSBSGGGCBCC---CEEETTS-BHHHHHHHHHHHTCSEEEEECT
T ss_pred ------CCCCHHHHcCCC---CeEEcCC-CHHHHHHHHHHcCCeEEEEEcC
Confidence 257899999865 9999999 9999999999 79999999864
No 70
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.62 E-value=2.4e-15 Score=132.77 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=100.3
Q ss_pred CCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCe-eEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhh
Q 013939 211 SSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSA-IAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQF 288 (433)
Q Consensus 211 ~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isa-vpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f 288 (433)
.++++ +|+++++++.+++++.+|+++|.+ ++++ +||+|+ + +++|+||.+||+..... .+
T Consensus 16 ~~v~~--im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~---~--~~vGivt~~dl~~~~~~----~~-------- 76 (157)
T 1o50_A 16 KDVCK--LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD---N--KLVGMIPVMHLLKVSGF----HF-------- 76 (157)
T ss_dssp HHHTT--SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET---T--EEEEEEEHHHHHHHHHH----HH--------
T ss_pred ccHhh--cccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC---C--EEEEEEEHHHHHHHHhh----hH--------
Confidence 34554 799999999999999999999999 9999 999995 6 99999999999875310 00
Q ss_pred hhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCC
Q 013939 289 VMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKIT 368 (433)
Q Consensus 289 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~ 368 (433)
..++.. +..|.. .. .. .....+ + ..|.. +++|+++
T Consensus 77 ~~~~~~---~~~~~~---------~~-~~---------~~~~~v-----------------~-----~im~~-~~~v~~~ 111 (157)
T 1o50_A 77 FGFIPK---EELIRS---------SM-KR---------LIAKNA-----------------S-----EIMLD-PVYVHMD 111 (157)
T ss_dssp HCCCC-------------------CC-CC---------CSSCBH-----------------H-----HHCBC-CCCBCTT
T ss_pred Hhhhcc---HHHHHH---------HH-HH---------HcCCcH-----------------H-----HHcCC-CeEECCC
Confidence 001100 000000 00 00 000000 0 23566 9999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 369 SSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 369 ~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
++|.+|+.+|.+++++++||||++ |+++||||+.||++++.+.
T Consensus 112 ~~l~~a~~~m~~~~~~~lpVvd~~--g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 112 TPLEEALKLMIDNNIQEMPVVDEK--GEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp SBHHHHHHHHHHHTCSEEEEECTT--SCEEEEEEHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCCcEEEEEcCC--CEEEEEEEHHHHHHHHHHh
Confidence 999999999999999999999976 9999999999999998764
No 71
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.62 E-value=1.1e-15 Score=134.65 Aligned_cols=125 Identities=15% Similarity=0.211 Sum_probs=99.3
Q ss_pred CCcccccCcC------CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939 211 SSISSLGVIN------PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANL 283 (433)
Q Consensus 211 ~tV~~L~im~------~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l 283 (433)
+++++ +|+ ++++++.+++++.+|+++|.+ +++.+||+| +| +++|+||.+|+++.....
T Consensus 7 ~~v~d--im~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~---~~--~~~Givt~~dl~~~~~~~-------- 71 (157)
T 4fry_A 7 TTVAQ--ILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD---GD--DIAGIVTERDYARKVVLQ-------- 71 (157)
T ss_dssp CBHHH--HHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES---SS--SEEEEEEHHHHHHHSGGG--------
T ss_pred HHHHH--HHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee---CC--EEEEEEEHHHHHHHHHhc--------
Confidence 44555 465 557999999999999999999 999999966 57 999999999998653100
Q ss_pred cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939 284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL 363 (433)
Q Consensus 284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 363 (433)
.. .+ .. ..+ + ..|..+++
T Consensus 72 ----------~~-~~--------------~~---------------~~v-----------------~-----~~m~~~~~ 89 (157)
T 4fry_A 72 ----------ER-SS--------------KA---------------TRV-----------------E-----EIMTAKVR 89 (157)
T ss_dssp ----------TC-CS--------------SS---------------CBH-----------------H-----HHSBSSCC
T ss_pred ----------cC-Cc--------------cc---------------cCH-----------------H-----HHcCCCCc
Confidence 00 00 00 000 0 22567899
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+|++++++.+++.+|.+++++++||+| + |+++||||+.||++++.....
T Consensus 90 ~v~~~~~l~~~~~~m~~~~~~~lpVvd-~--g~~~Giit~~dil~~l~~~~~ 138 (157)
T 4fry_A 90 YVEPSQSTDECMALMTEHRMRHLPVLD-G--GKLIGLISIGDLVKSVIADQQ 138 (157)
T ss_dssp CBCTTSBHHHHHHHHHHHTCSEEEEEE-T--TEEEEEEEHHHHHHHHHTTCC
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEEE-C--CEEEEEEEHHHHHHHHHHHHH
Confidence 999999999999999999999999999 5 899999999999999998655
No 72
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.62 E-value=5.3e-15 Score=127.04 Aligned_cols=126 Identities=14% Similarity=0.159 Sum_probs=105.9
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|...+|+|+|. ++++++++++|+.+|++.|.+++++++||+|.+ ++++|+|+..|+++.+....
T Consensus 3 ~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~ 67 (138)
T 2yzi_A 3 MDMKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-------------GNVVGFFTKSDIIRRVIVPG 67 (138)
T ss_dssp CCTTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-------------SCEEEEEEHHHHHHHTTTTC
T ss_pred chhhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CcEEEEEeHHHHHHHHHhcC
Confidence 466778999986 678999999999999999999999999999853 79999999999985433221
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
. ..+.+|+++|..+ ++++++++++.+|++.|. ++++++ |+++++
T Consensus 68 ~------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g------------------------- 112 (138)
T 2yzi_A 68 L------PYDIPVERIMTRN---LITANVNTPLGEVLRKMAEHRIKHI-LIEEEG------------------------- 112 (138)
T ss_dssp C------CTTSBGGGTCBCS---CCEEETTSBHHHHHHHHHHHTCSEE-EEEETT-------------------------
T ss_pred C------cccCCHHHHhhCC---CeEECCCCcHHHHHHHHHhcCCCEE-EECCCC-------------------------
Confidence 1 2357899999865 899999999999999999 799999 876432
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++|+||+.|+++++.+
T Consensus 113 ---------------------~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 113 ---------------------KIVGIFTLSDLLEASRR 129 (138)
T ss_dssp ---------------------EEEEEEEHHHHHHHHHC
T ss_pred ---------------------CEEEEEEHHHHHHHHHH
Confidence 46899999999999864
No 73
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.61 E-value=3.6e-15 Score=131.27 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=106.9
Q ss_pred hhHhhhhcCC----CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 8 HVVGDLTVGK----PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 8 ~~v~DL~~~k----~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.+|+|+|..+ ++++++++++|+.+|++.|.+++++++||.+ +++++|+||..||++++....
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--------------~~~~~Givt~~dl~~~~~~~~ 72 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--------------GDDIAGIVTERDYARKVVLQE 72 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--------------SSSEEEEEEHHHHHHHSGGGT
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--------------CCEEEEEEEHHHHHHHHHhcc
Confidence 4699999755 6789999999999999999999999999965 279999999999999876431
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
. ...+.+|+++|.++ ++++++++++.+|++.|. ++++++||+++ +
T Consensus 73 ~-----~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-g------------------------- 118 (157)
T 4fry_A 73 R-----SSKATRVEEIMTAK---VRYVEPSQSTDECMALMTEHRMRHLPVLDG-G------------------------- 118 (157)
T ss_dssp C-----CSSSCBHHHHSBSS---CCCBCTTSBHHHHHHHHHHHTCSEEEEEET-T-------------------------
T ss_pred C-----CccccCHHHHcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-------------------------
Confidence 1 12358999999865 899999999999999999 79999999873 2
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC 201 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~ 201 (433)
+++|+||+.|+++++.+.
T Consensus 119 ---------------------~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 119 ---------------------KLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp ---------------------EEEEEEEHHHHHHHHHTT
T ss_pred ---------------------EEEEEEEHHHHHHHHHHH
Confidence 358999999999999753
No 74
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.61 E-value=4.3e-15 Score=127.88 Aligned_cols=133 Identities=13% Similarity=0.304 Sum_probs=106.4
Q ss_pred cccchhHhhhh-cCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcC
Q 013939 4 VFIYHVVGDLT-VGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKS 82 (433)
Q Consensus 4 ~~~~~~v~DL~-~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~ 82 (433)
.|...+++|+. ...++++++++++++.+|++.|.+++++++||+|.+ ++++|+|+..|+++++...
T Consensus 4 ~~~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~ 70 (144)
T 2nyc_A 4 HFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-------------GYLINVYEAYDVLGLIKGG 70 (144)
T ss_dssp GGGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHHHHHHTC
T ss_pred chhhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-------------CcEEEEEcHHHHHHHhccc
Confidence 45667888943 233788999999999999999999999999999863 7999999999999987642
Q ss_pred CCcchHHhhcCCcchhccccCC---CccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccc
Q 013939 83 DCLEDQDKAMKTPVSQVIVPNN---SLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMD 158 (433)
Q Consensus 83 ~~l~~~~~~l~~pV~~Im~~~~---~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~ 158 (433)
. ....+.+|+++|.... .+++++++++++.+|++.|. ++++++||+++++
T Consensus 71 ~-----~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g--------------------- 124 (144)
T 2nyc_A 71 I-----YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG--------------------- 124 (144)
T ss_dssp ---------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTS---------------------
T ss_pred c-----cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCC---------------------
Confidence 1 1123578999997521 14899999999999999999 7999999986432
Q ss_pred ccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 159 ASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++|+||..|+++++.+
T Consensus 125 -------------------------~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 125 -------------------------RLVGVLTLSDILKYILL 141 (144)
T ss_dssp -------------------------BEEEEEEHHHHHHHHHH
T ss_pred -------------------------CEEEEEEHHHHHHHHHh
Confidence 46899999999999865
No 75
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.61 E-value=4.2e-15 Score=127.45 Aligned_cols=123 Identities=21% Similarity=0.205 Sum_probs=103.8
Q ss_pred hHhhhhcCC-CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcch
Q 013939 9 VVGDLTVGK-PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLED 87 (433)
Q Consensus 9 ~v~DL~~~k-~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~ 87 (433)
+|+|+|..+ ++++++++++++.+|++.|.+++++++||+| + ++++|+||..||++++.....
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-------------~~~~Givt~~dl~~~~~~~~~--- 69 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-------------EKLVGILTERDFSRKSYLLDK--- 69 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-------------TEEEEEEEHHHHHHHGGGSSS---
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-------------CEEEEEEehHHHHHHHHHcCC---
Confidence 589999522 5789999999999999999999999999998 3 799999999999976543211
Q ss_pred HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccc
Q 013939 88 QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNN 166 (433)
Q Consensus 88 ~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 166 (433)
...+.+|+++|.++ ++++++++++.+|++.|. ++++++||++ ++
T Consensus 70 --~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g----------------------------- 114 (135)
T 2rc3_A 70 --PVKDTQVKEIMTRQ---VAYVDLNNTNEDCMALITEMRVRHLPVLD-DG----------------------------- 114 (135)
T ss_dssp --CGGGSBGGGTSBCS---CCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TT-----------------------------
T ss_pred --CcccCCHHHhccCC---CeEECCCCcHHHHHHHHHHhCCCEEEEEe-CC-----------------------------
Confidence 12357899999865 899999999999999999 8999999987 32
Q ss_pred cccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 167 LIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+.+|+||..|+++++.+
T Consensus 115 -----------------~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 115 -----------------KVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp -----------------EEEEEEEHHHHHHHHHC
T ss_pred -----------------EEEEEEEHHHHHHHHHh
Confidence 35899999999999864
No 76
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.61 E-value=2e-15 Score=143.17 Aligned_cols=200 Identities=14% Similarity=0.125 Sum_probs=128.7
Q ss_pred cchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCc
Q 013939 6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCL 85 (433)
Q Consensus 6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l 85 (433)
...+|+|+|. ++++++++++++.+|+++|.+++++++||+|.+ ++++|+||..|+++++......
T Consensus 5 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-------------~~l~Giit~~di~~~~~~~~~~ 69 (245)
T 3l2b_A 5 VKLKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-------------NHLLGMLSTSNITATYMDIWDS 69 (245)
T ss_dssp CCCBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-------------CBEEEEEEHHHHHHHHHCCCCT
T ss_pred ccCcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CEEEEEEEHHHHHHHHHHhhhh
Confidence 3467999985 568999999999999999999999999999963 7999999999999987642110
Q ss_pred ----------chHHhhcC------------------------CcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeE
Q 013939 86 ----------EDQDKAMK------------------------TPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRL 130 (433)
Q Consensus 86 ----------~~~~~~l~------------------------~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl 130 (433)
.+..+.++ ..+.+.+.. +.++.+.. -.++.+.+. +|+..+
T Consensus 70 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~--~~ivIvgd---r~~~~~~~i~~~~~~l 144 (245)
T 3l2b_A 70 NILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE--GDIAIAGD---RAEIQAELIELKVSLL 144 (245)
T ss_dssp THHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCT--TCEEEECS---CHHHHHHHHHTTCSEE
T ss_pred hhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCC--CCEEEECC---CHHHHHHHHHcCCCEE
Confidence 00111111 011111221 23444422 356666666 788877
Q ss_pred EeeecCcccccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCC
Q 013939 131 LVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPL 210 (433)
Q Consensus 131 ~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~ 210 (433)
++...... .....-+. .......|.|..|.......-. ..
T Consensus 145 iit~~~~~---~~~v~~~a-------------------------------~~~~~~~i~t~~d~~~~~~~~~------~~ 184 (245)
T 3l2b_A 145 IVTGGHTP---SKEIIELA-------------------------------KKNNITVITTPHDSFTASRLIV------QS 184 (245)
T ss_dssp EECTTCCC---CHHHHHHH-------------------------------HHHTCEEEECSSCHHHHHHHGG------GG
T ss_pred EECCCCCC---CHHHHHHH-------------------------------HHcCCeEEEeCCChHHHHHHHh------cC
Confidence 66432110 00000000 0012234566666554332100 12
Q ss_pred CCcccccCcC-CCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhc
Q 013939 211 SSISSLGVIN-PNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKC 271 (433)
Q Consensus 211 ~tV~~L~im~-~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~ 271 (433)
.++++ +|+ ++++++.+++++.+|+++|.+ +++++||||+ +| +++|+||.+|+++.
T Consensus 185 ~~v~~--im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~--~~--~~~Giit~~dll~~ 241 (245)
T 3l2b_A 185 LPVDY--VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE--NN--KVVGSIARFHLIST 241 (245)
T ss_dssp SBHHH--HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT--TC--BEEEEEECC-----
T ss_pred Cceee--EecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC--CC--eEEEEEEHHHhhch
Confidence 34665 698 899999999999999999999 9999999998 78 99999999999865
No 77
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.60 E-value=2.4e-15 Score=128.17 Aligned_cols=122 Identities=15% Similarity=0.197 Sum_probs=104.1
Q ss_pred chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939 7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE 86 (433)
Q Consensus 7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~ 86 (433)
.-+|+|+|. ++++++++++++.+|++.|.+++++++||+|. ++++|+||..||++++.+...
T Consensus 4 s~~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--------------~~~~Givt~~dl~~~~~~~~~-- 65 (128)
T 3gby_A 4 SVTFSYLAE--TDYPVFTLGGSTADAARRLAASGCACAPVLDG--------------ERYLGMVHLSRLLEGRKGWPT-- 65 (128)
T ss_dssp TCBGGGGCB--CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--------------TEEEEEEEHHHHHTTCSSSCC--
T ss_pred ceEHHHhhc--CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--------------CEEEEEEEHHHHHHHHhhCCc--
Confidence 457899986 56899999999999999999999999999994 699999999999987643211
Q ss_pred hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccc
Q 013939 87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSN 165 (433)
Q Consensus 87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 165 (433)
.+.+|+++|.++ ++++.+++++.+|++.|. ++++++||+++++
T Consensus 66 -----~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g---------------------------- 109 (128)
T 3gby_A 66 -----VKEKLGEELLET---VRSYRPGEQLFDNLISVAAAKCSVVPLADEDG---------------------------- 109 (128)
T ss_dssp -----TTCBCCGGGCBC---CCCBCTTSBGGGSHHHHHHCSSSEEEEECTTC----------------------------
T ss_pred -----ccCcHHHHccCC---CcEECCCCCHHHHHHHHHhCCCcEEEEECCCC----------------------------
Confidence 136899999865 899999999999999999 7899999986432
Q ss_pred ccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 166 NLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+.+|+||+.|+++++.+
T Consensus 110 ------------------~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 110 ------------------RYEGVVSRKRILGFLAE 126 (128)
T ss_dssp ------------------BEEEEEEHHHHHHHHHT
T ss_pred ------------------CEEEEEEHHHHHHHHHh
Confidence 46899999999999864
No 78
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.60 E-value=5.2e-15 Score=129.86 Aligned_cols=136 Identities=14% Similarity=0.197 Sum_probs=108.4
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|...+|+|+|....+++++++++|+.+|++.|.+++++++||+|.+ ++++|+||..|++.++....
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-------------~~~~Givt~~dl~~~~~~~~ 73 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-------------YKLHGLISMTMMMDAILGLE 73 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-------------CCEEEEEEHHHHHHHSBCSS
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-------------CCEEEEeeHHHHHHHHhccc
Confidence 35567899998643478999999999999999999999999999963 79999999999999876532
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
... .......+|+++|..+ ++++++++++.+|++.|. +++ +||++++
T Consensus 74 ~~~-~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~-------------------------- 121 (157)
T 2emq_A 74 RIE-FERLETMKVEEVMNRN---IPRLRLDDSLMKAVGLIVNHPF--VCVENDD-------------------------- 121 (157)
T ss_dssp SBC-GGGGGTCBGGGTCBCC---CCEEETTSBHHHHHHHHHHSSE--EEEECSS--------------------------
T ss_pred ccc-hHHhcCCcHHHHhCCC---CceecCCCcHHHHHHHHhhCCE--EEEEcCC--------------------------
Confidence 221 1223468999999865 899999999999999999 566 8887542
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCC
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGA 204 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~ 204 (433)
|+++|+||..|+++++.+....
T Consensus 122 --------------------g~~~Giit~~dil~~~~~~~~~ 143 (157)
T 2emq_A 122 --------------------GYFAGIFTRREVLKQLNKQLHR 143 (157)
T ss_dssp --------------------SSEEEEEEHHHHHHHHHHTTCC
T ss_pred --------------------CeEEEEEEHHHHHHHHHHHhhc
Confidence 2568999999999999764443
No 79
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.60 E-value=2e-15 Score=135.79 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=103.2
Q ss_pred CCCcccccCcCCC----eEEE--cCCCcHHHHHHhccc-CCCeeEEe--cCCCCCcceEEeecchhhhhhcchhHHHHHH
Q 013939 210 LSSISSLGVINPN----YSSI--EASVPAIEATLKAPG-DPSAIAVL--EPTSEDQYKIIGEISASKLWKCDYLAAAWAL 280 (433)
Q Consensus 210 ~~tV~~L~im~~~----vitv--~~~~~v~ea~~~M~~-~isavpVV--d~~~~g~~klvGiIS~~DL~~~~~~~~~~~~ 280 (433)
..++++ +|++. ++++ .+++++.+|+++|.+ +++++||| |+ +| +++|+||.+||+..........
T Consensus 10 ~~~v~d--im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~--~~--~lvGiit~~dl~~~~~~~~~~~- 82 (185)
T 2j9l_A 10 KTLAMD--VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE--SQ--RLVGFVLRRDLIISIENARKKQ- 82 (185)
T ss_dssp CCBHHH--HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT--TC--BEEEEEEHHHHHHHHHHHHTSC-
T ss_pred cCcHHH--HhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC--CC--eEEEEEEHHHHHHHHHhhcccC-
Confidence 456666 68876 8888 999999999999999 99999999 55 77 9999999999987541100000
Q ss_pred hhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC
Q 013939 281 ANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS 360 (433)
Q Consensus 281 ~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (433)
..+.-..+ .+.... .+. .. ........ ++ ..|..
T Consensus 83 ~~~~~~~~-~~~~~~-~~~-------------~~---------~~~~~~~~-----------------v~-----~im~~ 116 (185)
T 2j9l_A 83 DGVVSTSI-IYFTEH-SPP-------------LP---------PYTPPTLK-----------------LR-----NILDL 116 (185)
T ss_dssp SCCCTTCE-EECSSS-CCC-------------CC---------TTCCCCEE-----------------CG-----GGEES
T ss_pred CCccccce-eecccC-Ccc-------------cc---------cccccCcc-----------------HH-----HhhCc
Confidence 00000000 000000 000 00 00000000 00 33577
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 361 TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 361 ~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
++++|+++++|.+|+.+|.+++++++||+| + |+++||||+.||++++.....
T Consensus 117 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~--g~~vGiit~~dll~~l~~~~~ 168 (185)
T 2j9l_A 117 SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-N--GRLLGIITKKDVLKHIAQMAN 168 (185)
T ss_dssp SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-T--TEEEEEEEHHHHHHHHHHHCC
T ss_pred CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-C--CEEEEEEEHHHHHHHHHHhhc
Confidence 899999999999999999999999999999 5 899999999999999987544
No 80
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.60 E-value=1.4e-15 Score=134.50 Aligned_cols=134 Identities=14% Similarity=0.136 Sum_probs=102.5
Q ss_pred CCCCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhh
Q 013939 206 APLPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALAN 282 (433)
Q Consensus 206 ~~l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~ 282 (433)
..+...++++ +|.+ +++++.+++++.+|+++|.+ +++++||||+ +| +++|+||.+||+......
T Consensus 9 ~~l~~~~v~~--im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--~~--~lvGivt~~dl~~~~~~~------- 75 (159)
T 1yav_A 9 DQLLEATVGQ--FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP--SY--RLHGLIGTNMIMNSIFGL------- 75 (159)
T ss_dssp --CTTCBHHH--HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT--TC--BEEEEEEHHHHHHHHBCS-------
T ss_pred HHHhHhhHHH--HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC--CC--CEEEEeEHHHHHHHhhhh-------
Confidence 3445567776 6887 89999999999999999999 9999999998 78 999999999998643000
Q ss_pred ccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCC
Q 013939 283 LSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTP 362 (433)
Q Consensus 283 l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (433)
..+ .+ ..... ..+ + ..|..++
T Consensus 76 ---~~~-~~---------------------~~~~~------------~~v-----------------~-----~~m~~~~ 96 (159)
T 1yav_A 76 ---ERI-EF---------------------EKLDQ------------ITV-----------------E-----EVMLTDI 96 (159)
T ss_dssp ---SSB-CG---------------------GGTTT------------SBH-----------------H-----HHSBCSC
T ss_pred ---ccc-ch---------------------hhhcc------------CCH-----------------H-----HhcCCCC
Confidence 000 00 00000 000 0 2357789
Q ss_pred eEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 363 LTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 363 it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
++|.+++++.+|+.+|.++++ +||||++ |+++||||+.||++++.+.-.
T Consensus 97 ~~v~~~~~l~~a~~~m~~~~~--lpVvd~~--g~~vGiit~~dil~~~~~~~~ 145 (159)
T 1yav_A 97 PRLHINDPIMKGFGMVINNGF--VCVENDE--QVFEGIFTRRVVLKELNKHIR 145 (159)
T ss_dssp CEEETTSBHHHHHHHTTTCSE--EEEECTT--CBEEEEEEHHHHHHHHHHHC-
T ss_pred ceEcCCCCHHHHHHHHHhCCE--EEEEeCC--CeEEEEEEHHHHHHHHHHHHH
Confidence 999999999999999999987 9999987 999999999999999987544
No 81
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.60 E-value=1.7e-15 Score=135.45 Aligned_cols=134 Identities=23% Similarity=0.336 Sum_probs=106.5
Q ss_pred hhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC----
Q 013939 8 HVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD---- 83 (433)
Q Consensus 8 ~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~---- 83 (433)
.+|+|+|..+.+++++++++|+.+|+++|.+++++++||+|.+ ++++|+||..||++++....
T Consensus 4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-------------~~~~Givt~~dl~~~~~~~~~~~~ 70 (180)
T 3sl7_A 4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-------------WTLVGVVSDYDLLALDSISGRSQN 70 (180)
T ss_dssp CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHTCC---------
T ss_pred eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-------------CeEEEEEEHHHHHhhhhhccccCC
Confidence 3689999744479999999999999999999999999999963 79999999999986432100
Q ss_pred -------------Ccch----HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccch
Q 013939 84 -------------CLED----QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRF 145 (433)
Q Consensus 84 -------------~l~~----~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~ 145 (433)
.+.. .....+.+|+++|... ++++.+++++.+|++.|. ++++++||+++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-------- 139 (180)
T 3sl7_A 71 DTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPS---PLVVRDSTNLEDAARLLLETKFRRLPVVDADG-------- 139 (180)
T ss_dssp ----------CCCSHHHHHHHHHTTTTCBHHHHSEES---CCCEETTSBHHHHHHHHTTSTTCEEEEECTTC--------
T ss_pred cccccccccchhhhhHHHHHHHhccccccHHHHhCCC---ceEeCCCCcHHHHHHHHHHcCCCEEEEECCCC--------
Confidence 0000 0122467999999865 889999999999999999 7899999986432
Q ss_pred hhhccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccC
Q 013939 146 SILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLG 203 (433)
Q Consensus 146 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~ 203 (433)
+++|+||+.||++++.+...
T Consensus 140 --------------------------------------~~vGiit~~dil~~~~~~~~ 159 (180)
T 3sl7_A 140 --------------------------------------KLIGILTRGNVVRAALQIKR 159 (180)
T ss_dssp --------------------------------------BEEEEEEHHHHHHHHHHHHH
T ss_pred --------------------------------------eEEEEEEHHHHHHHHHHHhh
Confidence 46899999999999976443
No 82
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.59 E-value=5e-15 Score=130.86 Aligned_cols=133 Identities=15% Similarity=0.245 Sum_probs=108.7
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~ 84 (433)
|...+|+|+|..+.+++++++++++.+|++.|.+++++++||+|.+ ++++|+||..||+.++.....
T Consensus 11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-------------~~lvGivt~~dl~~~~~~~~~ 77 (159)
T 1yav_A 11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-------------YRLHGLIGTNMIMNSIFGLER 77 (159)
T ss_dssp CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-------------CBEEEEEEHHHHHHHHBCSSS
T ss_pred HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-------------CCEEEEeEHHHHHHHhhhhcc
Confidence 5567899998643378999999999999999999999999999863 799999999999998865322
Q ss_pred cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939 85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS 163 (433)
Q Consensus 85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 163 (433)
+ ........+|+++|.++ ++++.+++++.+|++.|. +++ +||++++
T Consensus 78 ~-~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~--------------------------- 124 (159)
T 1yav_A 78 I-EFEKLDQITVEEVMLTD---IPRLHINDPIMKGFGMVINNGF--VCVENDE--------------------------- 124 (159)
T ss_dssp B-CGGGTTTSBHHHHSBCS---CCEEETTSBHHHHHHHTTTCSE--EEEECTT---------------------------
T ss_pred c-chhhhccCCHHHhcCCC---CceEcCCCCHHHHHHHHHhCCE--EEEEeCC---------------------------
Confidence 2 11223468999999865 899999999999999998 555 8887642
Q ss_pred ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHcc
Q 013939 164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCL 202 (433)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~ 202 (433)
++++|+||+.|+++++.+..
T Consensus 125 -------------------g~~vGiit~~dil~~~~~~~ 144 (159)
T 1yav_A 125 -------------------QVFEGIFTRRVVLKELNKHI 144 (159)
T ss_dssp -------------------CBEEEEEEHHHHHHHHHHHC
T ss_pred -------------------CeEEEEEEHHHHHHHHHHHH
Confidence 24689999999999997643
No 83
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.59 E-value=2.9e-15 Score=140.13 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=100.9
Q ss_pred hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939 9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ 88 (433)
Q Consensus 9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~ 88 (433)
++++++. ++++++++++|+.+|+++|.+++++++||+|.+ ++++|+||..|++.++.
T Consensus 14 ~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-------------~~l~Givt~~dl~~~~~-------- 70 (213)
T 1vr9_A 14 KVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-------------GHFRGVVNKEDLLDLDL-------- 70 (213)
T ss_dssp BGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-------------SBEEEEEEGGGGTTSCT--------
T ss_pred CHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-------------CEEEEEEEHHHHHhhcC--------
Confidence 4667664 678999999999999999999999999999853 79999999999976431
Q ss_pred HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcccccc
Q 013939 89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNL 167 (433)
Q Consensus 89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 167 (433)
+.+|+++|..+ ++++++++++.+|+++|. ++++++||+++++
T Consensus 71 ----~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g------------------------------ 113 (213)
T 1vr9_A 71 ----DSSVFNKVSLP---DFFVHEEDNITHALLLFLEHQEPYLPVVDEEM------------------------------ 113 (213)
T ss_dssp ----TSBSGGGCBCT---TCCEETTSBHHHHHHHHHHCCCSEEEEECTTC------------------------------
T ss_pred ----CCcHHHHccCC---CEEECCCCcHHHHHHHHHHhCCCEEEEEcCCC------------------------------
Confidence 46899999865 899999999999999999 7899999986532
Q ss_pred ccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCC-eEEEcCCCcHHHHHHhccc-CCCe
Q 013939 168 IANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPN-YSSIEASVPAIEATLKAPG-DPSA 245 (433)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~-vitv~~~~~v~ea~~~M~~-~isa 245 (433)
+++|+||..|+++.+..... ... .+..- +.+.....++.+|+++|.+ ++..
T Consensus 114 ----------------~lvGiit~~Dil~~~~~~~~-~~~----------~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~ 166 (213)
T 1vr9_A 114 ----------------RLKGAVSLHDFLEALIEALA-MDV----------PGIRFSVLLEDKPGELRKVVDALALSNINI 166 (213)
T ss_dssp ----------------BEEEEEEHHHHHHHHHHSCC--------------------------------------------
T ss_pred ----------------EEEEEEEHHHHHHHHHHHhc-CCC----------CcEEEEEEeCCCCccHHHHHHHHHHCCCcE
Confidence 46899999999998864221 110 11111 1122344458999999999 8999
Q ss_pred eEEecC
Q 013939 246 IAVLEP 251 (433)
Q Consensus 246 vpVVd~ 251 (433)
++|+..
T Consensus 167 l~V~~~ 172 (213)
T 1vr9_A 167 LSVITT 172 (213)
T ss_dssp ------
T ss_pred EEEEEE
Confidence 998875
No 84
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.59 E-value=7e-15 Score=130.59 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=105.6
Q ss_pred chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC--
Q 013939 7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC-- 84 (433)
Q Consensus 7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~-- 84 (433)
..+|+|+|. ++++++++++|+.+|+++|.+++++++||+|.+ ++++|+||..||+.++.....
T Consensus 4 ~~~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-------------~~lvGivt~~dl~~~~~~~~~~~ 68 (160)
T 2o16_A 4 MIKVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-------------KKLLGIVSQRDLLAAQESSLQRS 68 (160)
T ss_dssp CCBGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-------------CBEEEEEEHHHHHHHHHHHCC--
T ss_pred cCcHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CcEEEEEeHHHHHHHHHHhhccc
Confidence 457899986 578999999999999999999999999999863 799999999999998753100
Q ss_pred cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939 85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS 163 (433)
Q Consensus 85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 163 (433)
..........+|+++|..+ +++++++++|.+|++.|. ++++++||+++ +
T Consensus 69 ~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g-------------------------- 118 (160)
T 2o16_A 69 AQGDSLAFETPLFEVMHTD---VTSVAPQAGLKESAIYMQKHKIGCLPVVAK-D-------------------------- 118 (160)
T ss_dssp -------CCCBHHHHSCSC---EEEBCTTSBHHHHHHHHHHTTCSCEEEEET-T--------------------------
T ss_pred ccccchhcccCHHHHhcCC---CeEECCCCCHHHHHHHHHHhCCCEEEEEEC-C--------------------------
Confidence 0000123468999999865 999999999999999999 78999999865 2
Q ss_pred ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++|+||..||++++.+
T Consensus 119 --------------------~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 119 --------------------VLVGIITDSDFVTIAIN 135 (160)
T ss_dssp --------------------EEEEEECHHHHHHHHHH
T ss_pred --------------------EEEEEEEHHHHHHHHHH
Confidence 35899999999999875
No 85
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.59 E-value=2e-15 Score=128.90 Aligned_cols=107 Identities=23% Similarity=0.285 Sum_probs=89.3
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHH-HhhcCC
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVA-FLAKSD 83 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~-~l~~~~ 83 (433)
|.-.+|+|+|. ++++++++++|+.+|++.|.+++++++||+|.+ ++++|+|+..|++. ++.++.
T Consensus 5 ~~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~~ 69 (133)
T 1y5h_A 5 FTMTTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDD-------------DRLHGMLTDRDIVIKGLAAGL 69 (133)
T ss_dssp ---CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-------------GBEEEEEEHHHHHHTTGGGTC
T ss_pred hhhcCHHHHhc--CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-------------CeEEEEEeHHHHHHHHHhcCC
Confidence 34467999996 568999999999999999999999999999853 79999999999994 554321
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
. ..+.+|+++|..+ ++++++++++.+|++.|. ++++++||.++
T Consensus 70 ~------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~ 113 (133)
T 1y5h_A 70 D------PNTATAGELARDS---IYYVDANASIQEMLNVMEEHQVRRVPVISE 113 (133)
T ss_dssp C------TTTSBHHHHHTTC---CCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred C------ccccCHHHHhcCC---CEEECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 1 1247899999865 899999999999999999 89999999875
No 86
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.58 E-value=4.7e-15 Score=129.83 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=91.4
Q ss_pred hHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchH
Q 013939 9 VVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQ 88 (433)
Q Consensus 9 ~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~ 88 (433)
+|+|+|....+++++++++|+.+|++.|.++++.++||+|.+ ++++|+||..||++++.+...
T Consensus 29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-------------~~~~Givt~~dl~~~~~~~~~---- 91 (149)
T 3k2v_A 29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-------------MNIIGIFTDGDLRRVFDTGVD---- 91 (149)
T ss_dssp BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-------------CBEEEEEEHHHHHHHHCSSSC----
T ss_pred CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-------------CcEEEEecHHHHHHHHhcCCC----
Confidence 789998632378999999999999999999999999999963 799999999999998865322
Q ss_pred HhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 89 DKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 89 ~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
..+.+|+++|..+ ++++.+++++.+|++.|. ++++++||+++
T Consensus 92 --~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 134 (149)
T 3k2v_A 92 --MRDASIADVMTRG---GIRIRPGTLAVDALNLMQSRHITCVLVADG 134 (149)
T ss_dssp --CTTCBHHHHSEES---CCEECTTCBHHHHHHHHHHHTCSEEEEEET
T ss_pred --cccCcHHHHcCCC---CeEECCCCCHHHHHHHHHHcCCCEEEEecC
Confidence 2358999999865 899999999999999999 79999999865
No 87
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=130.75 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=98.8
Q ss_pred CCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHh---hccc
Q 013939 210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALA---NLSA 285 (433)
Q Consensus 210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~---~l~~ 285 (433)
..++++ +|+++++++.+++++.+|+++|.+ +++++||||+.++| +++|+||.+||+....... .... ..++
T Consensus 12 ~~~v~d--im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~--~~~Givt~~dl~~~~~~~~-~~~~~~~~~~v 86 (164)
T 2pfi_A 12 HVRVEH--FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQ--ILVGIVQRAQLVQALQAEP-PSRAPGHQQCL 86 (164)
T ss_dssp SCBHHH--HCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTC--BEEEEEEHHHHHHHHHC--------CCCCBH
T ss_pred CCCHHH--HcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCC--EEEEEEEHHHHHHHHHhhc-cccCCcccchh
Confidence 455665 699999999999999999999999 99999999941147 9999999999986531100 0000 0000
Q ss_pred hhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEe
Q 013939 286 GQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTC 365 (433)
Q Consensus 286 ~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 365 (433)
.+++. ... . ....+++|
T Consensus 87 ~~~m~---------------------------------------~~~-----------------------~-~~~~~~~v 103 (164)
T 2pfi_A 87 QDILA---------------------------------------RGC-----------------------P-TEPVTLTL 103 (164)
T ss_dssp HHHHH---------------------------------------TTC-----------------------C-CBCCCCCE
T ss_pred hhhhc---------------------------------------ccc-----------------------c-ccCCceEE
Confidence 00000 000 0 01227899
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 366 KITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 366 ~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
++++++.+|+.+|.+++++++||+| + |+++||||..||++++...
T Consensus 104 ~~~~~l~~~~~~m~~~~~~~lpVvd-~--g~l~Giit~~dil~~~~~~ 148 (164)
T 2pfi_A 104 FSETTLHQAQNLFKLLNLQSLFVTS-R--GRAVGCVSWVEMKKAISNL 148 (164)
T ss_dssp ETTCBHHHHHHHHHHTTCSEEEEEE-T--TEEEEEEEHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCCCEEEEEE-C--CEEEEEEEHHHHHHHHHhh
Confidence 9999999999999999999999999 5 8999999999999999874
No 88
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.58 E-value=5.4e-15 Score=129.86 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=98.4
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
++++++++++++.+|++.|.+++++++||+|.+ ++++|+||..||+.++..... ...+.+|+
T Consensus 29 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-------------~~~vGivt~~dl~~~~~~~~~-----~~~~~~v~ 90 (152)
T 2uv4_A 29 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-------------GRVVDIYSKFDVINLAAEKTY-----NNLDVSVT 90 (152)
T ss_dssp SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-------------SBEEEEEEHHHHHHHHHCSSC-----CCTTSBGG
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCceEeEECCC-------------CcEEEEEeHHHHHHHhcchhh-----hhhcchHH
Confidence 678999999999999999999999999999963 799999999999998764310 12357899
Q ss_pred hccccCC---CccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCC
Q 013939 98 QVIVPNN---SLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANR 173 (433)
Q Consensus 98 ~Im~~~~---~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 173 (433)
++|.... .+++++.+++++.+|++.|. ++++++||+++++
T Consensus 91 ~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g------------------------------------ 134 (152)
T 2uv4_A 91 KALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDEND------------------------------------ 134 (152)
T ss_dssp GGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTS------------------------------------
T ss_pred HHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCC------------------------------------
Confidence 9996210 23899999999999999999 7899999986532
Q ss_pred CCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939 174 PSSSSTTSVRDKFCCLSREDVIRFLI 199 (433)
Q Consensus 174 ~~~~~~~~~~~~~~iiTq~Dvi~~l~ 199 (433)
+++|+||..|+++++.
T Consensus 135 ----------~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 135 ----------VVKGIVSLSDILQALV 150 (152)
T ss_dssp ----------BEEEEEEHHHHHHHHC
T ss_pred ----------eEEEEEEHHHHHHHHH
Confidence 4689999999999874
No 89
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.57 E-value=9e-15 Score=132.69 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=105.3
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+ .++++|+|+..||+.++..+
T Consensus 32 ~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~Dl~~~~~~~- 98 (173)
T 3ocm_A 32 TLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS------------LDEVVGIGRAKDLVADLITE- 98 (173)
T ss_dssp HHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSS------------TTSEEEEEEHHHHHHHHHHH-
T ss_pred ccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC------------CCCEEEEEEHHHHHHHHhcC-
Confidence 35667899999755679999999999999999999999999999853 26999999999999987532
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
.+.+|+ +| . +++++.+++++.+|++.|. ++++++||+++.+
T Consensus 99 --------~~~~v~-~~-~---~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g------------------------- 140 (173)
T 3ocm_A 99 --------GRVRRN-RL-R---DPIIVHESIGILRLMDTLKRSRGQLVLVADEFG------------------------- 140 (173)
T ss_dssp --------SSCCGG-GS-B---CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTC-------------------------
T ss_pred --------CcchhH-hc-C---CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCC-------------------------
Confidence 146788 55 3 3789999999999999999 7899999986432
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++||||..||++.+.+
T Consensus 141 ---------------------~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 141 ---------------------AIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp ---------------------CEEEEECHHHHHHHHHC
T ss_pred ---------------------CEEEEEeHHHHHHHHhC
Confidence 46899999999999974
No 90
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.56 E-value=4.3e-14 Score=124.70 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=105.0
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCc-ceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhc--
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECG-IPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAK-- 81 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s-~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~-- 81 (433)
|...+|+|+|. ++++++++++|+.+|++.|.++++++ +||+|. + +++|+||..||++++..
T Consensus 13 ~~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-------------~-~~vGivt~~dl~~~~~~~~ 76 (157)
T 1o50_A 13 MKVKDVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-------------N-KLVGMIPVMHLLKVSGFHF 76 (157)
T ss_dssp CBHHHHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-------------T-EEEEEEEHHHHHHHHHHHH
T ss_pred hccccHhhccc--CCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-------------C-EEEEEEEHHHHHHHHhhhH
Confidence 44567899885 67899999999999999999999999 999985 3 99999999999997641
Q ss_pred ------CCCcch-HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccc
Q 013939 82 ------SDCLED-QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKW 153 (433)
Q Consensus 82 ------~~~l~~-~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~ 153 (433)
...+.. .......+|+++|.. ++++++++++.+|++.|. ++++++||+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~v~~im~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g---------------- 136 (157)
T 1o50_A 77 FGFIPKEELIRSSMKRLIAKNASEIMLD----PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG---------------- 136 (157)
T ss_dssp HCCCC-------CCCCCSSCBHHHHCBC----CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTS----------------
T ss_pred HhhhccHHHHHHHHHHHcCCcHHHHcCC----CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCC----------------
Confidence 000000 011235789999983 789999999999999999 8999999986432
Q ss_pred cccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 154 LKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++|+||+.|+++++.+
T Consensus 137 ------------------------------~~vGiit~~dll~~l~~ 153 (157)
T 1o50_A 137 ------------------------------EIVGDLNSLEILLALWK 153 (157)
T ss_dssp ------------------------------CEEEEEEHHHHHHHHHH
T ss_pred ------------------------------EEEEEEEHHHHHHHHHH
Confidence 46899999999999875
No 91
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.55 E-value=3.5e-15 Score=132.17 Aligned_cols=108 Identities=17% Similarity=0.273 Sum_probs=91.9
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
.|...+|+|+|...++++++++++|+.+|++.|.+++++++||+|.+ +++++|+||..|++.++.++
T Consensus 34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~------------~~~lvGivt~~dl~~~~~~~- 100 (156)
T 3oi8_A 34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGED------------KDEVLGILHAKDLLKYMFNP- 100 (156)
T ss_dssp HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS------------TTCEEEEEEGGGGGGGSSCG-
T ss_pred ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC------------CCcEEEEEEHHHHHHHHHcC-
Confidence 35567899999644579999999999999999999999999999864 25999999999998875432
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV 136 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~ 136 (433)
.+.+|+++|.. ++++.+++++.+|++.|. ++++++||+++.
T Consensus 101 --------~~~~v~~im~~----~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~ 142 (156)
T 3oi8_A 101 --------EQFHLKSILRP----AVFVPEGKSLTALLKEFREQRNHMAIVIDEY 142 (156)
T ss_dssp --------GGCCHHHHCBC----CCEEETTSBHHHHHHHHHHTTCCEEEEECTT
T ss_pred --------CcccHHHHcCC----CEEECCCCCHHHHHHHHHhcCCeEEEEECCC
Confidence 35789999963 789999999999999999 789999998653
No 92
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.55 E-value=2.1e-14 Score=130.30 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=91.1
Q ss_pred chhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcc
Q 013939 7 YHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLE 86 (433)
Q Consensus 7 ~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~ 86 (433)
..+|+|+|. ++++++++++|+.+|+++|.+++++++||+|.+ ++++|+|+..||+.++.....
T Consensus 8 ~~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-------------g~~vGivt~~dl~~~~~~~~~-- 70 (184)
T 1pvm_A 8 FMRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-------------GNDVGLLSERSIIKRFIPRNK-- 70 (184)
T ss_dssp CCBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-------------SCEEEEEEHHHHHHHTGGGCC--
T ss_pred ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-------------CcEEEEEeHHHHHHHHhhccc--
Confidence 367999986 678999999999999999999999999999853 799999999999998764211
Q ss_pred hHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 87 DQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 87 ~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
.....+|+++|..+ ++++.+++++.+|++.|. ++++++||+++
T Consensus 71 ---~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 114 (184)
T 1pvm_A 71 ---KPDEVPIRLVMRKP---IPKVKSDYDVKDVAAYLSENGLERCAVVDD 114 (184)
T ss_dssp ---CGGGSBGGGTSBSS---CCEEETTCBHHHHHHHHHHHTCSEEEEECT
T ss_pred ---CcccCCHHHHhCCC---CcEECCCCCHHHHHHHHHHcCCcEEEEEcC
Confidence 12247899999864 899999999999999999 79999999864
No 93
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.55 E-value=3.5e-14 Score=127.66 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=106.6
Q ss_pred cccchhHhhhhcCCC--CeEEE--cCCccHHHHHHHHHhcCCCcceee--ccCCCccccccCcCCCCeEEEEEeHHHHHH
Q 013939 4 VFIYHVVGDLTVGKP--ELAEF--YETETVEAAIKAIGESTECGIPVW--KKKTHVGIIENGEMRQQRFVGILNSFDIVA 77 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~--~lVtv--~~~~tV~eAl~~L~e~~I~s~PVv--d~~~~~~~~~~~~~~~~~~VGivt~~DIl~ 77 (433)
.+...+|+|+|.... +++++ ++++++.+|+++|.+++++++||+ |. +++++|+||..|++.
T Consensus 7 ~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-------------~~~lvGiit~~dl~~ 73 (185)
T 2j9l_A 7 FAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-------------SQRLVGFVLRRDLII 73 (185)
T ss_dssp --CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-------------TCBEEEEEEHHHHHH
T ss_pred hhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-------------CCeEEEEEEHHHHHH
Confidence 355678999997442 27888 999999999999999999999999 44 379999999999999
Q ss_pred HhhcCC----Ccch--------------HHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcc
Q 013939 78 FLAKSD----CLED--------------QDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVW 138 (433)
Q Consensus 78 ~l~~~~----~l~~--------------~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~ 138 (433)
++.... .+.. .......+|+++|... ++++.++++|.+|++.|. ++++++||+++ +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~-g- 148 (185)
T 2j9l_A 74 SIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS---PFTVTDLTPMEIVVDIFRKLGLRQCLVTHN-G- 148 (185)
T ss_dssp HHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESS---CCEEETTSBHHHHHHHHHHHTCSEEEEEET-T-
T ss_pred HHHhhcccCCCccccceeecccCCcccccccccCccHHHhhCcC---CeEeCCCCCHHHHHHHHHhCCCcEEEEEEC-C-
Confidence 875310 0000 0012346899999865 899999999999999999 89999999862 2
Q ss_pred cccccchhhhccccccccccccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939 139 KGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC 201 (433)
Q Consensus 139 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~ 201 (433)
+++|+||..||++++.+.
T Consensus 149 ---------------------------------------------~~vGiit~~dll~~l~~~ 166 (185)
T 2j9l_A 149 ---------------------------------------------RLLGIITKKDVLKHIAQM 166 (185)
T ss_dssp ---------------------------------------------EEEEEEEHHHHHHHHHHH
T ss_pred ---------------------------------------------EEEEEEEHHHHHHHHHHh
Confidence 458999999999999764
No 94
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.54 E-value=4.4e-14 Score=124.38 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=107.2
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~ 84 (433)
+...+|+|+|. ++++++++++|+.+|+++|.+++++++||+|.+. +++++|+||..||+.++.....
T Consensus 10 ~~~~~v~dim~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~-----------~~~~~Givt~~dl~~~~~~~~~ 76 (164)
T 2pfi_A 10 SHHVRVEHFMN--HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTE-----------SQILVGIVQRAQLVQALQAEPP 76 (164)
T ss_dssp CCSCBHHHHCB--CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTT-----------TCBEEEEEEHHHHHHHHHC---
T ss_pred ccCCCHHHHcC--CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCC-----------CCEEEEEEEHHHHHHHHHhhcc
Confidence 34568999986 5789999999999999999999999999998511 2799999999999998754311
Q ss_pred cchHHhhcCCcchhccccCC--Cc-cEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccccc
Q 013939 85 LEDQDKAMKTPVSQVIVPNN--SL-LKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDAS 160 (433)
Q Consensus 85 l~~~~~~l~~pV~~Im~~~~--~~-~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 160 (433)
.. ......++.++|.... .+ ++++++++++.+|++.|. ++++++||+++ +
T Consensus 77 ~~--~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-g----------------------- 130 (164)
T 2pfi_A 77 SR--APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR-G----------------------- 130 (164)
T ss_dssp ------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET-T-----------------------
T ss_pred cc--CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC-C-----------------------
Confidence 00 0113468999997531 12 688999999999999999 78999999873 2
Q ss_pred CccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHcc
Q 013939 161 NSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCL 202 (433)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~ 202 (433)
+++|+||+.|+++++.+..
T Consensus 131 -----------------------~l~Giit~~dil~~~~~~~ 149 (164)
T 2pfi_A 131 -----------------------RAVGCVSWVEMKKAISNLT 149 (164)
T ss_dssp -----------------------EEEEEEEHHHHHHHHHHHH
T ss_pred -----------------------EEEEEEEHHHHHHHHHhhh
Confidence 3589999999999997643
No 95
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.53 E-value=3.2e-14 Score=139.26 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=101.7
Q ss_pred CCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc------CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHH
Q 013939 207 PLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG------DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWAL 280 (433)
Q Consensus 207 ~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~------~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~ 280 (433)
.....++++ +|+++++++.+++++.+|++.|.+ +++.+||||+ +| +++|+||.+|++...
T Consensus 133 ~~~~~~v~~--iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~--~~--~lvGivt~~dll~~~-------- 198 (286)
T 2oux_A 133 HYEDETAGA--IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ--EN--HLVGVISLRDLIVND-------- 198 (286)
T ss_dssp TSCTTBHHH--HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT--TC--BEEEEEEHHHHTTSC--------
T ss_pred cCChHHHHH--hCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC--CC--eEEEEEEHHHHHcCC--------
Confidence 345567776 699999999999999999999987 4667999998 78 999999999997542
Q ss_pred hhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC
Q 013939 281 ANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS 360 (433)
Q Consensus 281 ~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (433)
...++. ..|.+
T Consensus 199 ~~~~v~---------------------------------------------------------------------~im~~ 209 (286)
T 2oux_A 199 DDTLIA---------------------------------------------------------------------DILNE 209 (286)
T ss_dssp TTSBHH---------------------------------------------------------------------HHSBS
T ss_pred CCCcHH---------------------------------------------------------------------HHcCC
Confidence 000000 22567
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 361 TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 361 ~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
++++|++++++.+|+.+|.+++++++||||++ |+++||||..||++.+..
T Consensus 210 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~--g~lvGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 210 RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD--DHLLGIVTVDDIIDVIDD 259 (286)
T ss_dssp CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT--CBEEEEEEHHHHHHHHHH
T ss_pred CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCC--CeEEEEEEHHHHHHHHHH
Confidence 89999999999999999999999999999987 999999999999999875
No 96
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.52 E-value=5e-14 Score=136.88 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=98.9
Q ss_pred CCCcccccCcCCCeEEEcCCCcHHHHHHhccc------CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939 210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG------DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANL 283 (433)
Q Consensus 210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~------~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l 283 (433)
..++++ +|+++++++.+++++.+|++.|.+ +++.+||||+ +| +++|+||.+|++... ..
T Consensus 134 ~~~v~~--iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~--~~--~lvGivt~~dll~~~--------~~- 198 (278)
T 2yvy_A 134 EDEAGG--LMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE--KG--RLKGVLSLRDLIVAD--------PR- 198 (278)
T ss_dssp TTBGGG--TCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT--TC--BEEEEEEHHHHHHSC--------TT-
T ss_pred cchHHh--hcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC--CC--CEEEEEEHHHHhcCC--------CC-
Confidence 455665 799999999999999999999987 4789999998 78 999999999987431 00
Q ss_pred cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939 284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL 363 (433)
Q Consensus 284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 363 (433)
. .+ . ..|.++++
T Consensus 199 -----------------------------~-----------------~v--~--------------------~im~~~~~ 210 (278)
T 2yvy_A 199 -----------------------------T-----------------RV--A--------------------EIMNPKVV 210 (278)
T ss_dssp -----------------------------C-----------------BS--T--------------------TTSBSSCC
T ss_pred -----------------------------C-----------------cH--H--------------------HHhCCCCe
Confidence 0 00 0 22577899
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+|++++++.+|+.+|.+++++++||||++ |+++||||..||++.+...
T Consensus 211 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGivT~~Dil~~i~~e 258 (278)
T 2yvy_A 211 YVRTDTDQEEVARLMADYDFTVLPVVDEE--GRLVGIVTVDDVLDVLEAE 258 (278)
T ss_dssp CEETTSBHHHHHHHHHHHTCSEEEEECTT--SBEEEEEEHHHHHHHC---
T ss_pred EEeCCCCHHHHHHHHHhcCCCEEEEEeCC--CeEEEEEEHHHHHHHHHHH
Confidence 99999999999999999999999999987 9999999999999998764
No 97
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.49 E-value=1.4e-13 Score=128.38 Aligned_cols=122 Identities=13% Similarity=0.204 Sum_probs=105.3
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhc---CCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhh
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGES---TECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLA 80 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~---~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~ 80 (433)
.|...+++++|. ++++++++++|+.+|++.|.++ ++..+||+|.. ++++|+|+..|++..
T Consensus 50 ~~~~~~v~~iM~--~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-------------~~lvGivt~~dll~~-- 112 (205)
T 3kxr_A 50 QYSENEIGRYTD--HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-------------DKYLGTVRRYDIFKH-- 112 (205)
T ss_dssp HSCTTCGGGGCB--CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-------------CBEEEEEEHHHHTTS--
T ss_pred CCCcchHHhhcc--CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-------------CeEEEEEEHHHHHhC--
Confidence 355678999995 6899999999999999999998 89999999963 799999999999642
Q ss_pred cCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccc
Q 013939 81 KSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDA 159 (433)
Q Consensus 81 ~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~ 159 (433)
..+.+|+++|..+ ++++.+++++.+|++.|. ++++++||+++.+
T Consensus 113 ----------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g---------------------- 157 (205)
T 3kxr_A 113 ----------EPHEPLISLLSED---SRALTANTTLLDAAEAIEHSREIELPVIDDAG---------------------- 157 (205)
T ss_dssp ----------CTTSBGGGGCCSS---CCCEETTSCHHHHHHHHHTSSCSEEEEECTTS----------------------
T ss_pred ----------CCcchHHHHhcCC---CeEECCCCCHHHHHHHHHhcCCCEEEEEcCCC----------------------
Confidence 1247899999865 899999999999999999 7899999987532
Q ss_pred cCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939 160 SNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC 201 (433)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~ 201 (433)
+++||||..|+++.+.+.
T Consensus 158 ------------------------~lvGiIT~~Dil~~i~~e 175 (205)
T 3kxr_A 158 ------------------------ELIGRVTLRAATALVREH 175 (205)
T ss_dssp ------------------------BEEEEEEHHHHHHHHHHH
T ss_pred ------------------------eEEEEEEHHHHHHHHHHH
Confidence 468999999999999753
No 98
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.45 E-value=2.4e-13 Score=131.33 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=54.9
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhh
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLA 80 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~ 80 (433)
+..-+|+|+|. ++++++.+++++.+|.++|.+++++++||+|..+ .++++|||+..||+.++.
T Consensus 10 ~~~~~v~diMt--~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~-----------~~~LvGiIt~~dl~~~l~ 72 (250)
T 2d4z_A 10 KYNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPD-----------TNTLLGSIDRTEVEGLLQ 72 (250)
T ss_dssp CSSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTT-----------TCBEEEEEEHHHHHHHHH
T ss_pred cCCCChHHhcC--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCC-----------CCeEEEEEEHHHHHHHHH
Confidence 44567899985 6899999999999999999999999999999642 268999999999998764
No 99
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.45 E-value=1.1e-13 Score=146.60 Aligned_cols=138 Identities=13% Similarity=0.061 Sum_probs=102.0
Q ss_pred CCCCcccccCcCCCeEEEcCC-CcHHHHHHhccc-CCCeeEEec-CCCCCcceEEeecchhhhhhcchhHHHHHHhhccc
Q 013939 209 PLSSISSLGVINPNYSSIEAS-VPAIEATLKAPG-DPSAIAVLE-PTSEDQYKIIGEISASKLWKCDYLAAAWALANLSA 285 (433)
Q Consensus 209 ~~~tV~~L~im~~~vitv~~~-~~v~ea~~~M~~-~isavpVVd-~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~ 285 (433)
...+|++ +|+++++++.++ +++.+|+++|.+ +++.+|||| + +| +++|+||.+||++.....
T Consensus 382 ~~~~V~d--iM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~--~g--~lvGiVt~~Dll~~l~~~---------- 445 (527)
T 3pc3_A 382 WSLAIAE--LELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD--DG--SVLGVVGQETLITQIVSM---------- 445 (527)
T ss_dssp TTSBGGG--GCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT--TC--CEEEEEEHHHHHHHHHHH----------
T ss_pred cCCcHHH--hCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC--CC--EEEEEEEHHHHHHHHHhc----------
Confidence 3566776 699999999999 999999999999 999999999 6 67 999999999998653100
Q ss_pred hhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEe
Q 013939 286 GQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTC 365 (433)
Q Consensus 286 ~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~ 365 (433)
... .. ..+ + ..|++++++|
T Consensus 446 ---------~~~---------------~~---------------~~V-----------------~-----~im~~~~~~v 464 (527)
T 3pc3_A 446 ---------NRQ---------------QS---------------DPA-----------------I-----KALNKRVIRL 464 (527)
T ss_dssp ---------CCC---------------TT---------------SBG-----------------G-----GGEETTCCEE
T ss_pred ---------cCc---------------CC---------------CcH-----------------H-----HHhcCCCeEE
Confidence 000 00 001 0 2367899999
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEeCCC--CCeEEEEEeHHHHHHHHHhCCCCcCCCCCCccc
Q 013939 366 KITSSLAAVMAQMLSHRATHVWVTEDES--DDVLVGVVGYADILVAVTKQPAALTPANRTYEG 426 (433)
Q Consensus 366 ~p~~sL~~v~~~m~~~~vhrl~VVD~~~--~~~lvGIVs~~DIL~~i~~~~~~~~~~~~~~~~ 426 (433)
+++++|.+++.+|.++++ +||||+++ .|+++||||+.|||+++.++... ...|.++.|
T Consensus 465 ~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~~~-~~~ng~t~~ 524 (527)
T 3pc3_A 465 NESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGKQK-PKANGTTNG 524 (527)
T ss_dssp ETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCCCC----------
T ss_pred CCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcccc-cccCCCCCC
Confidence 999999999999977665 79999820 17999999999999999987652 334444433
No 100
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.44 E-value=3.5e-14 Score=153.63 Aligned_cols=172 Identities=12% Similarity=0.129 Sum_probs=102.1
Q ss_pred CCCCcccccCcC--CCeEEEcCCCcHHHHHHhcc-c-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhcc
Q 013939 209 PLSSISSLGVIN--PNYSSIEASVPAIEATLKAP-G-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLS 284 (433)
Q Consensus 209 ~~~tV~~L~im~--~~vitv~~~~~v~ea~~~M~-~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~ 284 (433)
...++++ +|+ ++++++++++++.|+.+.|. + +++++||||+ +| +++|+||.+||++.........-..+.
T Consensus 451 ~~~~V~d--iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~--~~--~lvGiVt~~DL~~~l~~~~~~~~~~~~ 524 (632)
T 3org_A 451 PEMTARE--IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA--NG--YLLGAISRKEIVDRLQHVLEDVPEPIA 524 (632)
T ss_dssp TTSBHHH--HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT--TC--BBCCEESHHHHTTTTTTC---------
T ss_pred ccCcHHH--HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec--CC--eEEEEEEHHHHHHHHHHHhhhcccccc
Confidence 3456665 699 89999999999999999999 8 8999999998 78 999999999999764211000000000
Q ss_pred chhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccC-CCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939 285 AGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRS-IGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL 363 (433)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 363 (433)
-.+.....+ ...+.+ .++....+.. .. .......++ .-.++. . .+. +.|+++++
T Consensus 525 ~~~~~~~~~----~~~l~~-~~~~~~~~~~-~~-----~~~~~~e~~~~~~~~~--------~-~v~-----~iMt~~pi 579 (632)
T 3org_A 525 GHRTLVLLD----AADLSE-NIEGLVDETP-SG-----EHSSKGKRTATVLEPT--------S-SLV-----VPCDVSPI 579 (632)
T ss_dssp ------------------------------------------------------------------C-----CSCCCCCC
T ss_pred cccceeccC----HHHHHh-hcccCCCCCc-cc-----chhhhcccceEeeccc--------c-ccc-----hhhcCCCc
Confidence 000000000 000000 0000000000 00 000000000 000000 0 011 45799999
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939 364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP 414 (433)
Q Consensus 364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~ 414 (433)
||++++++.+++++|.++++|++||+| + |+++||||++||++++.++.
T Consensus 580 tV~~~~~l~ea~~~M~~~~i~~lpVve-~--G~lvGIVT~~Dll~~~~~~~ 627 (632)
T 3org_A 580 VVTSYSLVRQLHFLFVMLMPSMIYVTE-R--GKLVGIVEREDVAYGYSNSL 627 (632)
T ss_dssp EEETTCBHHHHHHHHHHTCCSEEEEEE-T--TEEEEEEEGGGTEECCCC--
T ss_pred eecCCCcHHHHHHHHHhcCCCEEEEEE-C--CEEEEEEehhhHHHHHhhhH
Confidence 999999999999999999999999994 4 89999999999998876543
No 101
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.41 E-value=8e-13 Score=138.42 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=100.1
Q ss_pred CCCcccccCcCCCeEEEcCCCcHHHHHHhccc-C-----CCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhc
Q 013939 210 LSSISSLGVINPNYSSIEASVPAIEATLKAPG-D-----PSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANL 283 (433)
Q Consensus 210 ~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~-----isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l 283 (433)
..++++ +|+++++++.+++++.+|++.|.+ . ++.+||||+ ++ +++|+||.+|++... ..
T Consensus 154 ~~~v~~--iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~--~~--~lvGiVt~~Dll~~~--------~~- 218 (473)
T 2zy9_A 154 EDEAGG--LMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE--KG--RLKGVLSLRDLIVAD--------PR- 218 (473)
T ss_dssp TTBSTT--TCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT--TS--BEEEEEEHHHHHHSC--------TT-
T ss_pred CCCHHH--hCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC--CC--cEEEEEEHHHHhcCC--------CC-
Confidence 455665 799999999999999999999987 3 789999998 78 999999999997531 00
Q ss_pred cchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCe
Q 013939 284 SAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPL 363 (433)
Q Consensus 284 ~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 363 (433)
. .+ + ..|+++++
T Consensus 219 -----------------------------~-----------------~v-----------------~-----dim~~~~~ 230 (473)
T 2zy9_A 219 -----------------------------T-----------------RV-----------------A-----EIMNPKVV 230 (473)
T ss_dssp -----------------------------S-----------------BG-----------------G-----GTSBSSCC
T ss_pred -----------------------------C-----------------cH-----------------H-----HHhCCCCe
Confidence 0 00 0 22577899
Q ss_pred EecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 364 TCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 364 t~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
++++++++.+++++|.+++++++||||++ |+++||||..||++.+..
T Consensus 231 ~v~~~~~l~ea~~~m~~~~~~~lpVVDe~--g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 231 YVRTDTDQEEVARLMADYDFTVLPVVDEE--GRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp CEESSSBHHHHHHHHHHHTCSEEEEECTT--SBEEEEEEHHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHHhcCCcEEEEEcCC--CEEEEEEehHhhHHHHHH
Confidence 99999999999999999999999999998 999999999999998865
No 102
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.41 E-value=3.4e-13 Score=142.74 Aligned_cols=130 Identities=12% Similarity=0.193 Sum_probs=105.7
Q ss_pred ccchhHhhhhcCCCCeEEEcCC-ccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC
Q 013939 5 FIYHVVGDLTVGKPELAEFYET-ETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD 83 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~-~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~ 83 (433)
|...+|+|+|. +++++++++ +|+.+|+++|.+++++++||+|.+ +++++|+||..||++++....
T Consensus 381 l~~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~------------~g~lvGiVt~~Dll~~l~~~~ 446 (527)
T 3pc3_A 381 WWSLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD------------DGSVLGVVGQETLITQIVSMN 446 (527)
T ss_dssp TTTSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT------------TCCEEEEEEHHHHHHHHHHHC
T ss_pred ccCCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC------------CCEEEEEEEHHHHHHHHHhcc
Confidence 44578999985 678999999 999999999999999999999922 379999999999999876431
Q ss_pred CcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCc
Q 013939 84 CLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNS 162 (433)
Q Consensus 84 ~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 162 (433)
...+.+|+++|.++ +++++++++|.+|+++|. +++ +||++++..
T Consensus 447 ------~~~~~~V~~im~~~---~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~------------------------ 491 (527)
T 3pc3_A 447 ------RQQSDPAIKALNKR---VIRLNESEILGKLARVLEVDPS--VLILGKNPA------------------------ 491 (527)
T ss_dssp ------CCTTSBGGGGEETT---CCEEETTSBHHHHHHHHTTCSE--EEEEEECSS------------------------
T ss_pred ------CcCCCcHHHHhcCC---CeEECCCCcHHHHHHHHhhCCE--EEEEeCCcc------------------------
Confidence 12357999999865 999999999999999997 343 577765310
Q ss_pred cccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHc
Q 013939 163 SSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGC 201 (433)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~ 201 (433)
+.++++||||+.||++++.++
T Consensus 492 ------------------~~g~lvGIVT~~Dll~~l~~~ 512 (527)
T 3pc3_A 492 ------------------GKVELKALATKLDVTTFIAAG 512 (527)
T ss_dssp ------------------SCEEEEEEEEHHHHHHHHHTC
T ss_pred ------------------cCCeEEEEEEHHHHHHHHHhc
Confidence 113579999999999999764
No 103
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.39 E-value=1.1e-12 Score=128.42 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=104.1
Q ss_pred ccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhc-----CCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHh
Q 013939 5 FIYHVVGDLTVGKPELAEFYETETVEAAIKAIGES-----TECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFL 79 (433)
Q Consensus 5 ~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~-----~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l 79 (433)
+...+|+++|. ++++++++++|+.+|++.|.++ ++.++||+|.. ++++|+||..|++...
T Consensus 134 ~~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-------------~~lvGivt~~dll~~~ 198 (286)
T 2oux_A 134 YEDETAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-------------NHLVGVISLRDLIVND 198 (286)
T ss_dssp SCTTBHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-------------CBEEEEEEHHHHTTSC
T ss_pred CChHHHHHhCC--CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-------------CeEEEEEEHHHHHcCC
Confidence 45678999986 6789999999999999999998 88889999963 7999999999997531
Q ss_pred hcCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhcccccccccc
Q 013939 80 AKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMD 158 (433)
Q Consensus 80 ~~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~ 158 (433)
.+.+|+++|..+ ++++.+++++.+|++.|. ++++++||+++.+
T Consensus 199 ------------~~~~v~~im~~~---~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g--------------------- 242 (286)
T 2oux_A 199 ------------DDTLIADILNER---VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD--------------------- 242 (286)
T ss_dssp ------------TTSBHHHHSBSC---CCCEETTSBHHHHHHHHHHHTCSEEEEECTTC---------------------
T ss_pred ------------CCCcHHHHcCCC---CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCC---------------------
Confidence 247899999865 899999999999999999 7999999986432
Q ss_pred ccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 159 ASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++|+||..||++++.+
T Consensus 243 -------------------------~lvGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 243 -------------------------HLLGIVTVDDIIDVIDD 259 (286)
T ss_dssp -------------------------BEEEEEEHHHHHHHHHH
T ss_pred -------------------------eEEEEEEHHHHHHHHHH
Confidence 46899999999999865
No 104
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.39 E-value=1.5e-12 Score=137.72 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=98.7
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
.|..+++++.+++++.+|+++|.+ +++++||+|++.++ +++|+||.+||+... . ..
T Consensus 118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~--~lvGiVt~rDl~~~~-~------~~-------------- 174 (511)
T 3usb_A 118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDER--KLVGIITNRDMRFIQ-D------YS-------------- 174 (511)
T ss_dssp CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTC--BEEEEEEHHHHTTCC-C------SS--------------
T ss_pred ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCC--EEEEEEEehHhhhhc-c------CC--------------
Confidence 577889999999999999999999 99999999952135 999999999997421 0 00
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC-CCeEecCCCCHHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS-TPLTCKITSSLAAVM 375 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~it~~p~~sL~~v~ 375 (433)
. .+ . +.|++ +++++++++++.+++
T Consensus 175 ----------------~-----------------~V------~----------------~vM~~~~~vtv~~~~~l~eal 199 (511)
T 3usb_A 175 ----------------I-----------------KI------S----------------DVMTKEQLITAPVGTTLSEAE 199 (511)
T ss_dssp ----------------S-----------------BH------H----------------HHCCCCCCCCEETTCCHHHHH
T ss_pred ----------------C-----------------cH------H----------------HhcccCCCEEECCCCCHHHHH
Confidence 0 00 0 22455 899999999999999
Q ss_pred HHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCC
Q 013939 376 AQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAA 416 (433)
Q Consensus 376 ~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~ 416 (433)
++|.+++++++||||++ |+++|+||+.||++.+..+.+.
T Consensus 200 ~~m~~~~i~~lpVVDe~--g~l~GiIT~~Dil~~~~~p~a~ 238 (511)
T 3usb_A 200 KILQKYKIEKLPLVDNN--GVLQGLITIKDIEKVIEFPNSA 238 (511)
T ss_dssp HHHHHHTCSEEEEECTT--SBEEEEEEHHHHHHHHHCTTCC
T ss_pred HHHHHcCCCEEEEEeCC--CCEeeeccHHHHHHhhhcccch
Confidence 99999999999999998 9999999999999999875543
No 105
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.36 E-value=2e-12 Score=125.51 Aligned_cols=121 Identities=22% Similarity=0.253 Sum_probs=103.2
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhc-----CCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGES-----TECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF 78 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~-----~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~ 78 (433)
.|...+++++|. ++++++++++|+.+|++.|.++ ++.++||+|.. ++++|+||..|++..
T Consensus 131 ~~~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-------------~~lvGivt~~dll~~ 195 (278)
T 2yvy_A 131 RYEEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-------------GRLKGVLSLRDLIVA 195 (278)
T ss_dssp HSCTTBGGGTCB--SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-------------CBEEEEEEHHHHHHS
T ss_pred CCCcchHHhhcC--CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-------------CCEEEEEEHHHHhcC
Confidence 355678899985 6899999999999999999998 89999999963 799999999999863
Q ss_pred hhcCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccc
Q 013939 79 LAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNM 157 (433)
Q Consensus 79 l~~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~ 157 (433)
. .+.+|+++|..+ ++++.+++++.+|++.|. ++++++||+++.+
T Consensus 196 --~----------~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-------------------- 240 (278)
T 2yvy_A 196 --D----------PRTRVAEIMNPK---VVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-------------------- 240 (278)
T ss_dssp --C----------TTCBSTTTSBSS---CCCEETTSBHHHHHHHHHHHTCSEEEEECTTS--------------------
T ss_pred --C----------CCCcHHHHhCCC---CeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCC--------------------
Confidence 1 247899999865 899999999999999999 7999999986432
Q ss_pred cccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 158 DASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+++||||..||++.+.+
T Consensus 241 --------------------------~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 241 --------------------------RLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp --------------------------BEEEEEEHHHHHHHC--
T ss_pred --------------------------eEEEEEEHHHHHHHHHH
Confidence 46899999999998854
No 106
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.33 E-value=1.5e-13 Score=144.93 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=1.5
Q ss_pred cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCC---CcceEEeecchhhhhhcchhHHHHHHhhccchhhhhcccc
Q 013939 219 INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSE---DQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVED 294 (433)
Q Consensus 219 m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~---g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~ 294 (433)
|+++++++.+++++.+|+++|.+ +++++||+|+ + + +++|+||.+||+... . ....
T Consensus 103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~--~~~~g--~lvGiVt~~Dl~~~~-~-----~~~~----------- 161 (503)
T 1me8_A 103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDD--GTPHG--VLLGLVTQRDYPIDL-T-----QTET----------- 161 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCeEECCCCcHHHHHHHHHHcCceEEEEEEC--CCcCC--eEEEEEEHHHHHhhh-c-----cccC-----------
Confidence 88899999999999999999999 9999999997 6 7 999999999997520 0 0000
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCC--CeEecCCCCHH
Q 013939 295 NVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRST--PLTCKITSSLA 372 (433)
Q Consensus 295 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~it~~p~~sL~ 372 (433)
.+ . ..|+.+ +++|++++++.
T Consensus 162 ------------------------------------~V--~--------------------diM~~~~~~~tv~~~~sl~ 183 (503)
T 1me8_A 162 ------------------------------------KV--S--------------------DMMTPFSKLVTAHQDTKLS 183 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------cH--H--------------------HHhCCCCCCEEEcCCCcHH
Confidence 00 0 124555 99999999999
Q ss_pred HHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 373 AVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 373 ~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+++++|.+++++++||||++ |+++||||+.||++.+.....
T Consensus 184 ea~~~m~~~~i~~lpVVDe~--g~lvGiIT~~Dil~~~~~~~~ 224 (503)
T 1me8_A 184 EANKIIWEKKLNALPIIDDD--QHLRYIVFRKDYDRSQVCHNE 224 (503)
T ss_dssp ----------------------------------------CCC
T ss_pred HHHHHHHHcCCCEEEEEcCC--CeEEEEEEecHHHHhhhcccc
Confidence 99999999999999999998 999999999999999986554
No 107
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.33 E-value=1.6e-13 Score=144.01 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=4.9
Q ss_pred cCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 219 INPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 219 m~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
|..+++|+.|+.++.||+++|.+ +++++||+|++. ++ ||+||||.+|++..+. .
T Consensus 144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~--kLvGIvT~RD~rf~d~--------~-------------- 199 (556)
T 4af0_A 144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS--KLLGIVTGRDVQFQDA--------E-------------- 199 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC--EEEEEEeccccccccc--------c--------------
Confidence 55679999999999999999999 999999999621 35 9999999999875320 0
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA 376 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~ 376 (433)
. .+ + +.|+.+++|+..+.++.+|.+
T Consensus 200 ----------------~-----------------~V--~--------------------evMT~~lvt~~~~~~leeA~~ 224 (556)
T 4af0_A 200 ----------------T-----------------PI--K--------------------SVMTTEVVTGSSPITLEKANS 224 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------e-----------------Eh--h--------------------hhcccceEEecCCCCHHHHHH
Confidence 0 00 0 236789999999999999999
Q ss_pred HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCCC
Q 013939 377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPA 420 (433)
Q Consensus 377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~ 420 (433)
+|.+|++.+|||||++ ++|+|+||+.||++.-..+.+....+
T Consensus 225 iL~~~kieklpVVd~~--g~LvGlIT~kDi~k~~~~p~A~k~d~ 266 (556)
T 4af0_A 225 LLRETKKGKLPIVDSN--GHLVSLVARSDLLKNQNYPYASKVPE 266 (556)
T ss_dssp -----------------------------------CTTCCBCTT
T ss_pred HHHHccccceeEEccC--CcEEEEEEechhhhhhhCCcchhcch
Confidence 9999999999999998 99999999999999887766655443
No 108
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.32 E-value=4.6e-12 Score=132.77 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=97.5
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEec--CCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhcccc
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLE--PTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVED 294 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd--~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~ 294 (433)
+|+++++++.+++++.+|+++|.+ +++++||+| + ++ +++|+||.+||+... .
T Consensus 95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~--~~--~lvGivt~~Dl~~~~-~-------------------- 149 (491)
T 1zfj_A 95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA--NR--KLVGIITNRDMRFIS-D-------------------- 149 (491)
T ss_dssp TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT--TC--BEEEEEEHHHHHHCS-C--------------------
T ss_pred cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC--CC--EEEEEEEHHHHhhhc-c--------------------
Confidence 788899999999999999999999 999999999 6 77 999999999997431 0
Q ss_pred CCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC-CCeEecCCCCHHH
Q 013939 295 NVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS-TPLTCKITSSLAA 373 (433)
Q Consensus 295 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~it~~p~~sL~~ 373 (433)
.. ..+ . ..|++ +++++++++++.+
T Consensus 150 ------------------~~---------------~~v--~--------------------~im~~~~~~~v~~~~~l~~ 174 (491)
T 1zfj_A 150 ------------------YN---------------API--S--------------------EHMTSEHLVTAAVGTDLET 174 (491)
T ss_dssp ------------------SS---------------SBT--T--------------------TSCCCSCCCCEETTCCHHH
T ss_pred ------------------CC---------------CcH--H--------------------HHcCCCCCEEECCCCCHHH
Confidence 00 000 0 22566 8999999999999
Q ss_pred HHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 374 VMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 374 v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
++++|.+++++++||||++ |+++|+||+.||++.+..
T Consensus 175 a~~~m~~~~~~~lpVVd~~--g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 175 AERILHEHRIEKLPLVDNS--GRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp HHHHHHHTTCSEEEEECTT--SBEEEEEEHHHHHHHHHC
T ss_pred HHHHHHHcCCCEEEEEcCC--CcEEEEEEHHHHHHHHhc
Confidence 9999999999999999998 999999999999999985
No 109
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.31 E-value=4.8e-13 Score=141.00 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=84.6
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
+|..+++++.+++++.+|+++|.+ +++++||+|+ ++ +++|+||.+||+... .
T Consensus 94 ~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~--~~--~lvGiVt~rDL~~~~-~---------------------- 146 (496)
T 4fxs_A 94 GVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE--NN--ELVGIITGRDVRFVT-D---------------------- 146 (496)
T ss_dssp --CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS--SS--BEEEEEEHHHHTTCC-C----------------------
T ss_pred ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc--CC--EEEEEEEHHHHhhcc-c----------------------
Confidence 578889999999999999999999 9999999998 78 999999999997321 0
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC-C-CCeEecCCCCHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR-S-TPLTCKITSSLAAV 374 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~it~~p~~sL~~v 374 (433)
.. ..+ . +.|+ . +++++++++++.++
T Consensus 147 ----------------~~---------------~~v--~--------------------diM~p~~~~vtv~~~~~l~ea 173 (496)
T 4fxs_A 147 ----------------LT---------------KSV--A--------------------AVMTPKERLATVKEGATGAEV 173 (496)
T ss_dssp ----------------TT---------------SBG--G--------------------GTSEEGGGCCEEECC----CG
T ss_pred ----------------CC---------------CcH--H--------------------HHhcCCCCCEEECCCCCHHHH
Confidence 00 000 0 1245 3 69999999999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
+++|.+|+++++||||++ |+++|+||+.||++....+.+
T Consensus 174 ~~~m~~~~i~~lpVVDe~--G~l~GiIT~~DIl~~~~~p~a 212 (496)
T 4fxs_A 174 QEKMHKARVEKILVVNDE--FQLKGMITAKDFHKAESKPNA 212 (496)
T ss_dssp GGTCC---CCCEEEECTT--SBCCEEECCC-----CCCTTC
T ss_pred HHHHHHcCCCEEEEEcCC--CCEEEeehHhHHHHhhcccch
Confidence 999999999999999998 999999999999998765544
No 110
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.26 E-value=4.6e-13 Score=140.61 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=6.5
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
+|.++++++.+++++.+|+++|.+ +++.+||||+ ++ +++|+||.+||+... . ..
T Consensus 100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~--~lvGivt~~Dl~~~~-~------~~-------------- 154 (494)
T 1vrd_A 100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE--EG--RLVGLLTNRDVRFEK-N------LS-------------- 154 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC--CC--EEEEEEEHHHHHhhc-C------CC--------------
Confidence 688899999999999999999999 9999999997 78 999999999997521 0 00
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCC--CCeEecCCCCHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRS--TPLTCKITSSLAAV 374 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~it~~p~~sL~~v 374 (433)
. .+ . ..|++ +++++++++++.++
T Consensus 155 ----------------~-----------------~v--~--------------------~im~~~~~~~~v~~~~~l~ea 179 (494)
T 1vrd_A 155 ----------------K-----------------KI--K--------------------DLMTPREKLIVAPPDISLEKA 179 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------C-----------------cH--H--------------------HHhCCCCCCeEECCCCCHHHH
Confidence 0 00 0 12455 89999999999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
+.+|.+++++++||||++ |+++||||+.||++.+..+
T Consensus 180 ~~~m~~~~~~~lpVVd~~--g~lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 180 KEILHQHRIEKLPLVSKD--NKLVGLITIKDIMSVIEHP 216 (494)
T ss_dssp -------------------------------CHHHHTCT
T ss_pred HHHHHHcCCcEEEEEcCC--CeEEEEEEHHHHHhhhccc
Confidence 999999999999999998 9999999999999998754
No 111
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.26 E-value=7.4e-13 Score=139.31 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=2.8
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
+|..+++++.+++++.+|+++|.+ +++++||+| ++ +++|+||.+||+... . ..
T Consensus 93 ~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd---~g--~lvGIVt~rDl~~~~-~------~~-------------- 146 (490)
T 4avf_A 93 AIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE---QG--ELVGIVTGRDLRVKP-N------AG-------------- 146 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE---CC--EEEEEEEhHHhhhcc-c------cC--------------
Confidence 577889999999999999999999 999999999 47 999999999996321 0 00
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCC-C-CCeEecCCCCHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGR-S-TPLTCKITSSLAAV 374 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~it~~p~~sL~~v 374 (433)
. .+ . +.|+ . +++++++++++.++
T Consensus 147 ----------------~-----------------~V--~--------------------~vMtp~~~~vtv~~~~~l~ea 171 (490)
T 4avf_A 147 ----------------D-----------------TV--A--------------------AIMTPKDKLVTAREGTPLEEM 171 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------C-----------------cH--H--------------------HHhccCCCCEEECCCCcHHHH
Confidence 0 00 0 2245 3 79999999999999
Q ss_pred HHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCC
Q 013939 375 MAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPAA 416 (433)
Q Consensus 375 ~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~ 416 (433)
+++|.+++++++||||++ |+++|+||+.||+++...+.+.
T Consensus 172 ~~~m~~~~i~~lpVVDe~--g~lvGiIT~~Dil~~~~~p~a~ 211 (490)
T 4avf_A 172 KAKLYENRIEKMLVVDEN--FYLRGLVTFRDIEKAKTYPLAS 211 (490)
T ss_dssp -------------------------------------CTTCC
T ss_pred HHHHHHcCCCEEEEEcCC--CcEEEEEehHHhhhhccCcchh
Confidence 999999999999999998 9999999999999998766554
No 112
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.23 E-value=1.2e-11 Score=96.53 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=55.9
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++|+.+|+++|.+++++++||+|. ++++||||++||++.+.... ....+.||++
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--------------~~lvGIvT~~Di~~~~~~~~-----~~~~~~~V~~ 61 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG--------------DEILGVVTERDILDKVVAKG-----KNPKEVKVEE 61 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET--------------TEEEEEEEHHHHHHHTTTTT-----CCGGGCBGGG
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------CEEEEEEEHHHHHHHHHhcC-----CCcccCCHHH
Confidence 4799999999999999999999999999983 79999999999998765421 1223589999
Q ss_pred ccccC
Q 013939 99 VIVPN 103 (433)
Q Consensus 99 Im~~~ 103 (433)
+|+++
T Consensus 62 iMt~~ 66 (70)
T 3ghd_A 62 IMTKN 66 (70)
T ss_dssp TCEEC
T ss_pred hcCCC
Confidence 99975
No 113
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.22 E-value=3.5e-11 Score=125.99 Aligned_cols=121 Identities=22% Similarity=0.253 Sum_probs=104.0
Q ss_pred cccchhHhhhhcCCCCeEEEcCCccHHHHHHHHHhc-----CCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHH
Q 013939 4 VFIYHVVGDLTVGKPELAEFYETETVEAAIKAIGES-----TECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAF 78 (433)
Q Consensus 4 ~~~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~-----~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~ 78 (433)
.|...+++++|. ++++++++++|+++|++.|.++ ++.++||+|.+ ++++|+|+.+|++..
T Consensus 151 ~~~~~~v~~iM~--~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-------------~~lvGiVt~~Dll~~ 215 (473)
T 2zy9_A 151 RYEEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-------------GRLKGVLSLRDLIVA 215 (473)
T ss_dssp TSCTTBSTTTCB--SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-------------SBEEEEEEHHHHHHS
T ss_pred cCCCCCHHHhCC--CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-------------CcEEEEEEHHHHhcC
Confidence 355667888885 6899999999999999999997 58999999963 799999999999863
Q ss_pred hhcCCCcchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccc
Q 013939 79 LAKSDCLEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNM 157 (433)
Q Consensus 79 l~~~~~l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~ 157 (433)
. .+.+|+++|.++ ++++++++++.+|++.|. ++++++||+++.+
T Consensus 216 --~----------~~~~v~dim~~~---~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g-------------------- 260 (473)
T 2zy9_A 216 --D----------PRTRVAEIMNPK---VVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-------------------- 260 (473)
T ss_dssp --C----------TTSBGGGTSBSS---CCCEESSSBHHHHHHHHHHHTCSEEEEECTTS--------------------
T ss_pred --C----------CCCcHHHHhCCC---CeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCC--------------------
Confidence 1 247999999865 999999999999999999 7999999987532
Q ss_pred cccCccccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHH
Q 013939 158 DASNSSSNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIG 200 (433)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~ 200 (433)
+.+|+||..|+++.+.+
T Consensus 261 --------------------------~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 261 --------------------------RLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp --------------------------BEEEEEEHHHHHHHHHH
T ss_pred --------------------------EEEEEEehHhhHHHHHH
Confidence 46899999999999864
No 114
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.21 E-value=4.4e-12 Score=137.20 Aligned_cols=113 Identities=7% Similarity=-0.023 Sum_probs=88.0
Q ss_pred cchhHhhhhcCCCCeEEEcCCccHHHHHHHHH-hcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCC-
Q 013939 6 IYHVVGDLTVGKPELAEFYETETVEAAIKAIG-ESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSD- 83 (433)
Q Consensus 6 ~~~~v~DL~~~k~~lVtv~~~~tV~eAl~~L~-e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~- 83 (433)
...+|+|+|.-.++++++++++|++|+++.|. +++++++||+|++ ++++|+|+..|+++.+.+..
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~-------------~~lvGiVt~~DL~~~l~~~~~ 517 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN-------------GYLLGAISRKEIVDRLQHVLE 517 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT-------------CBBCCEESHHHHTTTTTTC--
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC-------------CeEEEEEEHHHHHHHHHHHhh
Confidence 45679999975578999999999999999999 8999999999963 79999999999998765320
Q ss_pred Ccch-------------------HHhhc---------------------CCcchhccccCCCccEEeCCCCcHHHHHHHH
Q 013939 84 CLED-------------------QDKAM---------------------KTPVSQVIVPNNSLLKQVDPGTRLIDALEMM 123 (433)
Q Consensus 84 ~l~~-------------------~~~~l---------------------~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m 123 (433)
.... ..... ..+|+++|+++ ++++++++++.||+++|
T Consensus 518 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~---pitV~~~~~l~ea~~~M 594 (632)
T 3org_A 518 DVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVS---PIVVTSYSLVRQLHFLF 594 (632)
T ss_dssp -----------------------------------------------------CCSCCCC---CCEEETTCBHHHHHHHH
T ss_pred hcccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCC---CceecCCCcHHHHHHHH
Confidence 0000 00000 11488899976 88999999999999999
Q ss_pred H-cCCCeEEeee
Q 013939 124 K-QGVRRLLVPK 134 (433)
Q Consensus 124 ~-~gi~rl~V~~ 134 (433)
. +++|++||++
T Consensus 595 ~~~~i~~lpVve 606 (632)
T 3org_A 595 VMLMPSMIYVTE 606 (632)
T ss_dssp HHTCCSEEEEEE
T ss_pred HhcCCCEEEEEE
Confidence 9 7899999983
No 115
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.19 E-value=1.2e-10 Score=123.16 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=117.9
Q ss_pred hHhhhhcC----CCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCC
Q 013939 9 VVGDLTVG----KPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDC 84 (433)
Q Consensus 9 ~v~DL~~~----k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~ 84 (433)
.|.+++.. .++++++++++|+.+|+++|.+++++++||+|... +++++|+||.+|+.. .
T Consensus 108 ~V~~V~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~-----------~~~lvGiVt~rDl~~---~--- 170 (511)
T 3usb_A 108 QVDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLD-----------ERKLVGIITNRDMRF---I--- 170 (511)
T ss_dssp HHHHHHTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTT-----------TCBEEEEEEHHHHTT---C---
T ss_pred HHHHhhccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCC-----------CCEEEEEEEehHhhh---h---
Confidence 46677654 36789999999999999999999999999999621 279999999999953 1
Q ss_pred cchHHhhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCcc
Q 013939 85 LEDQDKAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSS 163 (433)
Q Consensus 85 l~~~~~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 163 (433)
...+.+|+++|.+ .+++++++++++.+|+++|. ++++++||+++++
T Consensus 171 -----~~~~~~V~~vM~~--~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g-------------------------- 217 (511)
T 3usb_A 171 -----QDYSIKISDVMTK--EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG-------------------------- 217 (511)
T ss_dssp -----CCSSSBHHHHCCC--CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTS--------------------------
T ss_pred -----ccCCCcHHHhccc--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCC--------------------------
Confidence 1135789999996 24999999999999999999 8999999987543
Q ss_pred ccccccccCCCCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCC--eEEEcCCCcHHHHHHhccc
Q 013939 164 SNNLIANANRPSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPN--YSSIEASVPAIEATLKAPG 241 (433)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~--vitv~~~~~v~ea~~~M~~ 241 (433)
.++|+||..|+++.+.. ..... +.+.+. -..+.......+.++.+.+
T Consensus 218 --------------------~l~GiIT~~Dil~~~~~-p~a~~----------D~~~rl~V~aavg~~~d~~era~aLve 266 (511)
T 3usb_A 218 --------------------VLQGLITIKDIEKVIEF-PNSAK----------DKQGRLLVGAAVGVTADAMTRIDALVK 266 (511)
T ss_dssp --------------------BEEEEEEHHHHHHHHHC-TTCCB----------CTTSCBCCEEEECSSTTHHHHHHHHHH
T ss_pred --------------------CEeeeccHHHHHHhhhc-ccchh----------hhccceeeeeeeeeccchHHHHHHHHh
Confidence 46899999999998853 11110 012221 2344444455666666666
Q ss_pred -CCCeeEEec
Q 013939 242 -DPSAIAVLE 250 (433)
Q Consensus 242 -~isavpVVd 250 (433)
+...+.|-.
T Consensus 267 aGvd~I~Id~ 276 (511)
T 3usb_A 267 ASVDAIVLDT 276 (511)
T ss_dssp TTCSEEEEEC
T ss_pred hccceEEecc
Confidence 555554443
No 116
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.15 E-value=1.7e-12 Score=137.14 Aligned_cols=135 Identities=10% Similarity=0.020 Sum_probs=79.7
Q ss_pred eHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCC-CCcceEEeecchhh
Q 013939 190 SREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTS-EDQYKIIGEISASK 267 (433)
Q Consensus 190 Tq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~-~g~~klvGiIS~~D 267 (433)
|.+++.+++.. .+++.+ +|.++++++.+++++.+|+++|.+ +++++||||++. ++ +++|+||.+|
T Consensus 96 t~e~~~~~v~~---------v~~~~~--im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~--~lvGiVt~~D 162 (514)
T 1jcn_A 96 TPEFQANEVRK---------VKNFEQ--GFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS--KLVGIVTSRD 162 (514)
T ss_dssp CHHHHHHHHHH---------HHTCCT--TSCSSCCCCCC-----------------CEESCC----------CCEECTTT
T ss_pred CHHHHHHHHHh---------hhhhhh--ccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC--EEEEEEEHHH
Confidence 77888877642 123333 688889999999999999999999 999999999610 16 9999999999
Q ss_pred hhhcchhHHHHHHhhccchhhhhccccCCCCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCC
Q 013939 268 LWKCDYLAAAWALANLSAGQFVMGVEDNVTPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSP 347 (433)
Q Consensus 268 L~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (433)
++... . .... . .+ .
T Consensus 163 l~~~~-~----~~~~------------------------------~-----------------~v--~------------ 176 (514)
T 1jcn_A 163 IDFLA-E----KDHT------------------------------T-----------------LL--S------------ 176 (514)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred HHhhh-h----ccCC------------------------------C-----------------CH--H------------
Confidence 97531 0 0000 0 00 0
Q ss_pred CCCCCccccCCCC--CCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhC
Q 013939 348 SFGTGRSMYRGRS--TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQ 413 (433)
Q Consensus 348 ~~~~~~~~~~~~~--~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~ 413 (433)
..|+. ++++++++++|.+++.+|.+++++++||||++ |+++|+||+.||++.+...
T Consensus 177 --------~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~--g~lvGiIt~~Dll~~~~~~ 234 (514)
T 1jcn_A 177 --------EVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDC--DELVAIIARTDLKKNRDYP 234 (514)
T ss_dssp ------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSS--SCCC----CCCCSSCCCCT
T ss_pred --------HHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCC--CeEEEEEEHHHHHHHhhCc
Confidence 22466 89999999999999999999999999999988 9999999999999987654
No 117
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.12 E-value=1.4e-11 Score=129.99 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=18.1
Q ss_pred CCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcc
Q 013939 17 KPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPV 96 (433)
Q Consensus 17 k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV 96 (433)
.++++++++++|+.+|+++|.+++++++||+|.+.. .++++||||.+||+.. . ...+.+|
T Consensus 104 ~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~----------~g~lvGiVt~~Dl~~~--~--------~~~~~~V 163 (503)
T 1me8_A 104 VVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTP----------HGVLLGLVTQRDYPID--L--------TQTETKV 163 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCc----------CCeEEEEEEHHHHHhh--h--------ccccCcH
Confidence 368899999999999999999999999999985200 1699999999999864 1 1235789
Q ss_pred hhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCCCC
Q 013939 97 SQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANRPS 175 (433)
Q Consensus 97 ~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 175 (433)
+++|.+. +.++++++++++.+|+++|. ++++++||+++++
T Consensus 164 ~diM~~~-~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g-------------------------------------- 204 (503)
T 1me8_A 164 SDMMTPF-SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ-------------------------------------- 204 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCC-CCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCC--------------------------------------
Confidence 9999842 34899999999999999999 7899999987532
Q ss_pred CCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCCCeEEEcCCCcHHHHHHhccc-CCCeeEE
Q 013939 176 SSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINPNYSSIEASVPAIEATLKAPG-DPSAIAV 248 (433)
Q Consensus 176 ~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~~vitv~~~~~v~ea~~~M~~-~isavpV 248 (433)
+++||||..||++.+...... ....+. ++. -..+.. ....+.++.|.+ ++..+.|
T Consensus 205 --------~lvGiIT~~Dil~~~~~~~~~-----~d~~~~--l~v--~a~v~~-~~~~e~~~~l~e~gv~~l~V 260 (503)
T 1me8_A 205 --------HLRYIVFRKDYDRSQVCHNEL-----VDSQKR--YLV--GAGINT-RDFRERVPALVEAGADVLCI 260 (503)
T ss_dssp -------------------------CCCC-----BCTTSC--BCC--EEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred --------eEEEEEEecHHHHhhhcccch-----hccccc--ccc--ccccCc-hhHHHHHHHHHhhhccceEE
Confidence 458999999999987532111 001111 111 124445 677788888888 7765544
No 118
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.11 E-value=6.8e-10 Score=116.24 Aligned_cols=118 Identities=14% Similarity=0.209 Sum_probs=98.9
Q ss_pred HhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHH
Q 013939 10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQD 89 (433)
Q Consensus 10 v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~ 89 (433)
+.|+|. ++++++++++|+.+|++.|.+++++++||+|.+. +++++|+|+..|++.. .
T Consensus 92 ~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-----------~~~lvGivt~~Dl~~~--~-------- 148 (491)
T 1zfj_A 92 SENGVI--IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-----------NRKLVGIITNRDMRFI--S-------- 148 (491)
T ss_dssp HTTTTS--SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-----------TCBEEEEEEHHHHHHC--S--------
T ss_pred HHhcCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-----------CCEEEEEEEHHHHhhh--c--------
Confidence 456554 6889999999999999999999999999998210 3799999999999853 1
Q ss_pred hhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccc
Q 013939 90 KAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLI 168 (433)
Q Consensus 90 ~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 168 (433)
..+.+|+++|.. .+++++++++++.++++.|. ++++++||+++.+
T Consensus 149 -~~~~~v~~im~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g------------------------------- 194 (491)
T 1zfj_A 149 -DYNAPISEHMTS--EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG------------------------------- 194 (491)
T ss_dssp -CSSSBTTTSCCC--SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS-------------------------------
T ss_pred -cCCCcHHHHcCC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-------------------------------
Confidence 125789999985 13899999999999999999 7899999986532
Q ss_pred cccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939 169 ANANRPSSSSTTSVRDKFCCLSREDVIRFLI 199 (433)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~ 199 (433)
+++|+||..||++.+.
T Consensus 195 ---------------~lvGivt~~Dil~~~~ 210 (491)
T 1zfj_A 195 ---------------RLSGLITIKDIEKVIE 210 (491)
T ss_dssp ---------------BEEEEEEHHHHHHHHH
T ss_pred ---------------cEEEEEEHHHHHHHHh
Confidence 4689999999999986
No 119
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.00 E-value=9.9e-11 Score=122.85 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=5.4
Q ss_pred HhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHH
Q 013939 10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQD 89 (433)
Q Consensus 10 v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~ 89 (433)
+.|+|. ++++++++++|+.+|+++|.+++++.+||+|.+ ++++|+||..|+... .
T Consensus 97 ~~~iM~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-------------~~lvGivt~~Dl~~~--~-------- 151 (494)
T 1vrd_A 97 TENGII--YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-------------GRLVGLLTNRDVRFE--K-------- 151 (494)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HhhcCc--cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-------------CEEEEEEEHHHHHhh--c--------
Confidence 345553 578999999999999999999999999999963 799999999999752 1
Q ss_pred hhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccc
Q 013939 90 KAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLI 168 (433)
Q Consensus 90 ~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 168 (433)
..+.+|+++|... .+++++++++++.+|+++|. ++++++||+++++
T Consensus 152 -~~~~~v~~im~~~-~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g------------------------------- 198 (494)
T 1vrd_A 152 -NLSKKIKDLMTPR-EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN------------------------------- 198 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCCCcHHHHhCCC-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-------------------------------
Confidence 1357899999851 13899999999999999999 7899999986532
Q ss_pred cccCCCCCCCcCCCCCeEEEeeHHHHHHHHH
Q 013939 169 ANANRPSSSSTTSVRDKFCCLSREDVIRFLI 199 (433)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~iiTq~Dvi~~l~ 199 (433)
+++|+||..|+++.+.
T Consensus 199 ---------------~lvGiIt~~Dll~~~~ 214 (494)
T 1vrd_A 199 ---------------KLVGLITIKDIMSVIE 214 (494)
T ss_dssp -------------------------CHHHHT
T ss_pred ---------------eEEEEEEHHHHHhhhc
Confidence 4589999999999874
No 120
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.99 E-value=4.2e-11 Score=125.65 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=1.0
Q ss_pred CcCCCeEEEcCCCcHHHHHHhccc-CCCeeEEecCCCCCcceEEeecchhhhhhcchhHHHHHHhhccchhhhhccccCC
Q 013939 218 VINPNYSSIEASVPAIEATLKAPG-DPSAIAVLEPTSEDQYKIIGEISASKLWKCDYLAAAWALANLSAGQFVMGVEDNV 296 (433)
Q Consensus 218 im~~~vitv~~~~~v~ea~~~M~~-~isavpVVd~~~~g~~klvGiIS~~DL~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 296 (433)
.|..+++++.+++++.+++++|.+ +++.+||+|+ + +++|+||.+||+. . ...+
T Consensus 98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~---~--~lvGivt~~Dl~~-~--------~~~~------------ 151 (486)
T 2cu0_A 98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED---E--KVVGIITKKDIAA-R--------EGKL------------ 151 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC---C--EEEEEEEHHHhcc-C--------CCCC------------
Confidence 577889999999999999999999 8999999994 6 9999999999864 1 0000
Q ss_pred CCCCCCCcccccccccccccCCCCCCCCccccccCCCCCCCCcccccCCCCCCCCCccccCCCCCCeEecCCCCHHHHHH
Q 013939 297 TPRSFPDYSANSTLRENNTVNGVGSTRPRKFCSRSIGFNPSSPCLAASRSPSFGTGRSMYRGRSTPLTCKITSSLAAVMA 376 (433)
Q Consensus 297 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~p~~sL~~v~~ 376 (433)
+ + ..|+++++++++++++.++++
T Consensus 152 -----------------------------------v------~----------------~im~~~~~~v~~~~~l~eal~ 174 (486)
T 2cu0_A 152 -----------------------------------V------K----------------ELMTKEVITVPESIEVEEALK 174 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------H------H----------------HHccCCCeEECCcCcHHHHHH
Confidence 0 0 124668999999999999999
Q ss_pred HHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHh
Q 013939 377 QMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTK 412 (433)
Q Consensus 377 ~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~ 412 (433)
+|.+++++++||||++ |+++|+||+.||++.+..
T Consensus 175 ~m~~~~~~~lpVVde~--g~lvGiiT~~Dil~~~~~ 208 (486)
T 2cu0_A 175 IMIENRIDRLPVVDER--GKLVGLITMSDLVARKKY 208 (486)
T ss_dssp ----------------------------------CC
T ss_pred HHHHcCCCEEEEEecC--CeEEEEEEHHHHHHhhhc
Confidence 9999999999999987 999999999999999753
No 121
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=98.96 E-value=6.4e-11 Score=124.33 Aligned_cols=94 Identities=17% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
.+++++.|+.||.||+++|.+++|+.+||++.... +++++||||.+|+- | . ..+++|+
T Consensus 146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~----------~~kLvGIvT~RD~r-f--~---------d~~~~V~ 203 (556)
T 4af0_A 146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEP----------DSKLLGIVTGRDVQ-F--Q---------DAETPIK 203 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCc----------CCEEEEEEeccccc-c--c---------ccceEhh
Confidence 46799999999999999999999999999986421 47999999999973 3 1 1248999
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV 136 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~ 136 (433)
++|+.+ ++++.++.++.+|.++|. +++.++||++++
T Consensus 204 evMT~~---lvt~~~~~~leeA~~iL~~~kieklpVVd~~ 240 (556)
T 4af0_A 204 SVMTTE---VVTGSSPITLEKANSLLRETKKGKLPIVDSN 240 (556)
T ss_dssp ----------------------------------------
T ss_pred hhcccc---eEEecCCCCHHHHHHHHHHccccceeEEccC
Confidence 999965 999999999999999999 789999998764
No 122
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.96 E-value=1.5e-09 Score=84.60 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=46.7
Q ss_pred CeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCC
Q 013939 362 PLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQPA 415 (433)
Q Consensus 362 ~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~ 415 (433)
++||+|++|+.+|+.+|.+++++++||+|+ |+|+||||.+||++.+..+..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~---~~lvGIvT~~Di~~~~~~~~~ 52 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG---DEILGVVTERDILDKVVAKGK 52 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET---TEEEEEEEHHHHHHHTTTTTC
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC---CEEEEEEEHHHHHHHHHhcCC
Confidence 689999999999999999999999999986 799999999999988765543
No 123
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=98.92 E-value=9.7e-11 Score=123.19 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=1.2
Q ss_pred HhhhhcCCCCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHH
Q 013939 10 VGDLTVGKPELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQD 89 (433)
Q Consensus 10 v~DL~~~k~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~ 89 (433)
+.++|. ++++++++++|+.+|+++|.+++++.+||+| + ++++||||.+||...
T Consensus 90 ~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-------------g~lvGIVt~rDl~~~----------- 142 (490)
T 4avf_A 90 HETAIV--RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-------------GELVGIVTGRDLRVK----------- 142 (490)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred cccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-------------CEEEEEEEhHHhhhc-----------
Confidence 344444 6789999999999999999999999999999 3 799999999999521
Q ss_pred hhcCCcchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecC
Q 013939 90 KAMKTPVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSV 136 (433)
Q Consensus 90 ~~l~~pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~ 136 (433)
...+.+|+++|.+. ++++++++++++.+|+++|. ++++.+||++++
T Consensus 143 ~~~~~~V~~vMtp~-~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~ 189 (490)
T 4avf_A 143 PNAGDTVAAIMTPK-DKLVTAREGTPLEEMKAKLYENRIEKMLVVDEN 189 (490)
T ss_dssp ------------------------------------------------
T ss_pred cccCCcHHHHhccC-CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCC
Confidence 12357899999821 24899999999999999999 789999998754
No 124
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=98.85 E-value=2.3e-09 Score=112.87 Aligned_cols=113 Identities=18% Similarity=0.218 Sum_probs=83.5
Q ss_pred cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCC
Q 013939 95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANR 173 (433)
Q Consensus 95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 173 (433)
.++++|..+ ++++++++++.+|+++|. +++.++||.+++
T Consensus 90 ~~~~~m~~d---~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~------------------------------------- 129 (496)
T 4fxs_A 90 IFEAGVVTH---PVTVRPEQTIADVMELTHYHGFAGFPVVTEN------------------------------------- 129 (496)
T ss_dssp HCCC--CBC---CCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-------------------------------------
T ss_pred ccccccccC---ceEECCCCCHHHHHHHHHHcCCcEEEEEccC-------------------------------------
Confidence 456778754 899999999999999999 789999998653
Q ss_pred CCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcC-C-CeEEEcCCCcHHHHHHhccc-CCCeeEEec
Q 013939 174 PSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVIN-P-NYSSIEASVPAIEATLKAPG-DPSAIAVLE 250 (433)
Q Consensus 174 ~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~-~-~vitv~~~~~v~ea~~~M~~-~isavpVVd 250 (433)
++++||||..|+.. ..-...+|++ +|+ + +++++++++++.+|+++|.+ ++..+||||
T Consensus 130 ---------~~lvGiVt~rDL~~---------~~~~~~~v~d--iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD 189 (496)
T 4fxs_A 130 ---------NELVGIITGRDVRF---------VTDLTKSVAA--VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN 189 (496)
T ss_dssp ---------SBEEEEEEHHHHTT---------CCCTTSBGGG--TSEEGGGCCEEECC----CGGGTCC---CCCEEEEC
T ss_pred ---------CEEEEEEEHHHHhh---------cccCCCcHHH--HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 25689999999851 1223456666 688 4 59999999999999999999 999999999
Q ss_pred CCCCCcceEEeecchhhhhhc
Q 013939 251 PTSEDQYKIIGEISASKLWKC 271 (433)
Q Consensus 251 ~~~~g~~klvGiIS~~DL~~~ 271 (433)
+ +| +++|+||..|+.+.
T Consensus 190 e--~G--~l~GiIT~~DIl~~ 206 (496)
T 4fxs_A 190 D--EF--QLKGMITAKDFHKA 206 (496)
T ss_dssp T--TS--BCCEEECCC-----
T ss_pred C--CC--CEEEeehHhHHHHh
Confidence 8 88 99999999999874
No 125
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.77 E-value=1.2e-08 Score=77.52 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=55.7
Q ss_pred CeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcchh
Q 013939 19 ELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVSQ 98 (433)
Q Consensus 19 ~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~~ 98 (433)
+++++++++++.+|++.|.+++++++||+|. ++++|+||..||++++..... ...+.+|++
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~--------------~~l~Givt~~dl~~~~~~~~~-----~~~~~~v~~ 61 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG--------------DEILGVVTERDILDKVVAKGK-----NPKEVKVEE 61 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET--------------TEEEEEEEHHHHHHHTTTTTC-----CGGGCBGGG
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--------------CEEEEEEEHHHHHHHHHHcCC-----CcccCCHHH
Confidence 4689999999999999999999999999984 699999999999998765311 123578999
Q ss_pred ccccC
Q 013939 99 VIVPN 103 (433)
Q Consensus 99 Im~~~ 103 (433)
+|.++
T Consensus 62 im~~~ 66 (70)
T 3fio_A 62 IMTKN 66 (70)
T ss_dssp TCEEC
T ss_pred hcCCC
Confidence 99864
No 126
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.74 E-value=2.2e-08 Score=75.97 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=47.2
Q ss_pred CCeEecCCCCHHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCC
Q 013939 361 TPLTCKITSSLAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILVAVTKQP 414 (433)
Q Consensus 361 ~~it~~p~~sL~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~ 414 (433)
++++|++++++.+|+++|.+++++++||+|+ |+++||||.+||++++....
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~---~~l~Givt~~dl~~~~~~~~ 51 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG---DEILGVVTERDILDKVVAKG 51 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET---TEEEEEEEHHHHHHHTTTTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC---CEEEEEEEHHHHHHHHHHcC
Confidence 4689999999999999999999999999997 79999999999999987653
No 127
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.62 E-value=4.1e-09 Score=110.55 Aligned_cols=88 Identities=24% Similarity=0.348 Sum_probs=0.0
Q ss_pred CCeEEEcCCccHHHHHHHHHhcCCCcceeeccCCCccccccCcCCCCeEEEEEeHHHHHHHhhcCCCcchHHhhcCCcch
Q 013939 18 PELAEFYETETVEAAIKAIGESTECGIPVWKKKTHVGIIENGEMRQQRFVGILNSFDIVAFLAKSDCLEDQDKAMKTPVS 97 (433)
Q Consensus 18 ~~lVtv~~~~tV~eAl~~L~e~~I~s~PVvd~~~~~~~~~~~~~~~~~~VGivt~~DIl~~l~~~~~l~~~~~~l~~pV~ 97 (433)
.+++++++++++.+|+++|.+++++.+||+|. ++++|+|+..|++. . .+.+|+
T Consensus 101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--------------~~lvGivt~~Dl~~---~----------~~~~v~ 153 (486)
T 2cu0_A 101 EDVITIAPDETVDFALFLMEKHGIDGLPVVED--------------EKVVGIITKKDIAA---R----------EGKLVK 153 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--------------CEEEEEEEHHHhcc---C----------CCCCHH
Confidence 68899999999999999999999999999984 58999999999974 1 146899
Q ss_pred hccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeec
Q 013939 98 QVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKS 135 (433)
Q Consensus 98 ~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~ 135 (433)
++|..+ ++++.+++++.++++.|. ++++++||+++
T Consensus 154 ~im~~~---~~~v~~~~~l~eal~~m~~~~~~~lpVVde 189 (486)
T 2cu0_A 154 ELMTKE---VITVPESIEVEEALKIMIENRIDRLPVVDE 189 (486)
T ss_dssp ---------------------------------------
T ss_pred HHccCC---CeEECCcCcHHHHHHHHHHcCCCEEEEEec
Confidence 999854 899999999999999999 78999999864
No 128
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.58 E-value=2.2e-09 Score=113.27 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=67.3
Q ss_pred cchhccccCCCccEEeCCCCcHHHHHHHHH-cCCCeEEeeecCcccccccchhhhccccccccccccCccccccccccCC
Q 013939 95 PVSQVIVPNNSLLKQVDPGTRLIDALEMMK-QGVRRLLVPKSVVWKGMSKRFSILYNGKWLKNMDASNSSSNNLIANANR 173 (433)
Q Consensus 95 pV~~Im~~~~~~~~~v~~~~sL~eaie~m~-~gi~rl~V~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 173 (433)
.+.++|..+ ++++.+++++.+|+++|. ++++++||++++..
T Consensus 109 ~~~~im~~~---~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~----------------------------------- 150 (514)
T 1jcn_A 109 NFEQGFITD---PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTM----------------------------------- 150 (514)
T ss_dssp TCCTTSCSS---CCCCCC-----------------CEESCC---------------------------------------
T ss_pred hhhhccccC---CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCc-----------------------------------
Confidence 467888754 889999999999999999 78999999865310
Q ss_pred CCCCCcCCCCCeEEEeeHHHHHHHHHHccCCCCCCCCCCcccccCcCC--CeEEEcCCCcHHHHHHhccc-CCCeeEEec
Q 013939 174 PSSSSTTSVRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGVINP--NYSSIEASVPAIEATLKAPG-DPSAIAVLE 250 (433)
Q Consensus 174 ~~~~~~~~~~~~~~iiTq~Dvi~~l~~~~~~l~~l~~~tV~~L~im~~--~vitv~~~~~v~ea~~~M~~-~isavpVVd 250 (433)
+++++||||..|+.+.. . .....++++ +|++ +++++.+++++.+|+++|.+ ++..+||||
T Consensus 151 --------~~~lvGiVt~~Dl~~~~-~------~~~~~~v~~--vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd 213 (514)
T 1jcn_A 151 --------GSKLVGIVTSRDIDFLA-E------KDHTTLLSE--VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN 213 (514)
T ss_dssp ------------CCEECTTTTC-------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES
T ss_pred --------CCEEEEEEEHHHHHhhh-h------ccCCCCHHH--HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC
Confidence 12458999999987531 0 112345665 6888 89999999999999999999 999999999
Q ss_pred CCCCCcceEEeecchhhhhhcc
Q 013939 251 PTSEDQYKIIGEISASKLWKCD 272 (433)
Q Consensus 251 ~~~~g~~klvGiIS~~DL~~~~ 272 (433)
+ +| +++|+||.+|+.+..
T Consensus 214 ~--~g--~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 214 D--CD--ELVAIIARTDLKKNR 231 (514)
T ss_dssp S--SS--CCC----CCCCSSCC
T ss_pred C--CC--eEEEEEEHHHHHHHh
Confidence 8 88 999999999998753
No 129
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=65.53 E-value=7.7 Score=30.39 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=32.5
Q ss_pred CCCEEEEEeCCCCCeEEEEEeHHHHHHHHHhCCCCcCCCCC
Q 013939 382 RATHVWVTEDESDDVLVGVVGYADILVAVTKQPAALTPANR 422 (433)
Q Consensus 382 ~vhrl~VVD~~~~~~lvGIVs~~DIL~~i~~~~~~~~~~~~ 422 (433)
+...|-|||++ |..+||+++.+-|+........|+.-++
T Consensus 12 r~~eVrli~~~--Ge~lGv~~~~eAl~~A~e~~LDLVevsp 50 (78)
T 1tif_A 12 RAREVRLIDQN--GDQLGIKSKQEALEIAARRNLDLVLVAP 50 (78)
T ss_dssp CCSEEEEECTT--SCEEEEEEHHHHHHHHHHTTCEEEEEET
T ss_pred CCCEEEEECCC--CcCCCcccHHHHHHHHHHcCCCEEEECC
Confidence 35678899998 9999999999999999888877765444
No 130
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=37.01 E-value=12 Score=32.67 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCCCeEEEEEeHHHHHH
Q 013939 371 LAAVMAQMLSHRATHVWVTEDESDDVLVGVVGYADILV 408 (433)
Q Consensus 371 L~~v~~~m~~~~vhrl~VVD~~~~~~lvGIVs~~DIL~ 408 (433)
+.+.++.+.+.+-.-|||-.+ ++++|+|.+.|.+|
T Consensus 121 ~~~~~~~la~~G~T~v~VA~d---~~l~GvIalaD~iK 155 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVEG---SRVLGVIALKDIVK 155 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEET---TEEEEEEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEEEC---CEEEEEEEEecCCC
Confidence 788888999999999999987 79999999998654
Done!