BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 013940
         (433 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P42251|PPBD_BACSU Alkaline phosphatase D OS=Bacillus subtilis (strain 168) GN=phoD
           PE=1 SV=3
          Length = 583

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 18/125 (14%)

Query: 136 IYTSYTFGPVGRQIKIILLDTRYHRD-PLSSDG-------------TILGSTQWTWLEKE 181
           +Y  +T+G +       +LDTR +RD   ++DG             T+LG  Q  WL   
Sbjct: 317 LYRHFTYGNLA---SFNVLDTRQYRDDQANNDGNKPPSDESRNPNRTLLGKEQEQWLFNN 373

Query: 182 LNGPSSAITIIVSSIQVIS-NLSATTGPLFYMESWGRFPKERDRLFQLIADSKRNGVFFI 240
           L   ++   ++   I     N   +  P++ M+SW  +P +R+R+   I     N V  +
Sbjct: 374 LGSSTAHWNVLAQQIFFAKWNFGTSASPIYSMDSWDGYPAQRERVINFIKSKNLNNVVVL 433

Query: 241 SGDVH 245
           +GDVH
Sbjct: 434 TGDVH 438


>sp|P43124|NSE4_YEAST Non-structural maintenance of chromosome element 4 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=NSE4 PE=1
           SV=1
          Length = 402

 Score = 33.1 bits (74), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 334 DTDGIPAIGVNISLSELQAQSVNSAATLRVGEHQKHCSLEVDLP----WIVRYRLTILF 388
           D +G+P I +  S+S   ++S       R   HQ H   ++D+P     I +Y +T  F
Sbjct: 342 DEEGLPTIKIKQSISHTDSRSKEIERQRRRAAHQNHIIFQMDMPTWRKLIKKYNITSPF 400


>sp|Q01016|CCPH_SHV21 Complement control protein homolog OS=Saimiriine herpesvirus 2
           (strain 11) GN=4 PE=3 SV=1
          Length = 360

 Score = 32.7 bits (73), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 219 PKERDRLFQLIADSKRNGVFFISGDVHFGEITRYDCDVGYALYDITSSGL 268
           PK+  +          NG + ++G++++G +  Y C+ GY+L   T+S  
Sbjct: 76  PKKCQKKKCSTPQDLLNGRYTVTGNLYYGSVITYTCNSGYSLIGSTTSAC 125


>sp|P96513|AMYB_BACFI Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV=1
          Length = 468

 Score = 32.0 bits (71), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 193 VSSIQVISNLSATT-GPLFYMESWGRFPKERDRLFQLIADSKRNGVFFISGDVHFGEI-T 250
            +S  V  ++ A+  GPL  +  WG F K+   L       K NGV+ I+ DV +G + +
Sbjct: 32  TASAAVADDIQASVMGPLAKINDWGSFKKQLQTL-------KNNGVYAITTDVWWGYVES 84

Query: 251 RYDCDVGYALYDITSSGLTQAVEKAVP 277
             D    ++ Y   +  + +A  K VP
Sbjct: 85  AGDNQFDWSYYKTYADAVKEAGLKWVP 111


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,902,425
Number of Sequences: 539616
Number of extensions: 6836705
Number of successful extensions: 17639
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 17635
Number of HSP's gapped (non-prelim): 7
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)