Citrus Sinensis ID: 013941

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
Protein Sequence
METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEEccccccccccEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccEEEEEccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccccEEEEEccccccccccEEEEEccccccccEEEEccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHccccccccccccccccccccccHHHHHHccccccHHHHcccccccccHHHHHHHHHHcccccccccHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEHccccccccccccccccccccccccccccccccccEccccccccccccccccHHcccccccccccccccccccccEEEEEEEEccccEEEEEEEEEcccEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHccccEEEEEHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccEEcccccHHHEEEcccccEEEcccccEEEccccccccccccccccEEEEEccccccccccccEcccccccccHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHccccccccccccHHHHHcccccccccccHHHHcccccHHHHHHHHHHccccccccccHHHHHccHHHHHccccccccc
Coil and Loop (DISEMBL)
metqriiefphknmdkrprkrprltwdvppplpppkvlpalycvqefgnggmpnyacssmfygaiprtgsppwrpddkdghyVFAIGENLTPRYRILskmgegtfgqVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLArhdiggtrcvqirnwfDYRNHICIVFEKLGPSLYDFLrknsyrsfPIDLVRELGRQLLESVAFMHELRLIhtdlkpenILLVSAeyvkvpdykflsrsskdgsyfknlpkssaiklidfgsttfehqdhsyvvstrhyrapevilglgwnypcdlwsvGCILVELCSGEALFQTHENLEHLAMMERVlgplphhmvIRADRRAEKYFRrgarldwpdgatsrdSMRAVWKLLrlpnlimqhVDHSAGDLIDLLQGLLRYDPAERLKAREalrhpfftrdvrrcgfpl
Flexible Loop (DISEMBL)
metqriiefphknmdkrprkrprltwdvppplpppkVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQrlarhdiggtrcvqirnWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIhtdlkpenILLVSAEYVKVPDYKFlsrsskdgsyfknlpkssAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRgarldwpdgatsrdSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKArealrhpfftrdvrrcgfpl
Low Complexity Region (SEG)
METQRIIEFPHKNMDKRPRKRPRLTWDvppplpppkvlpALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL
Disordered region (IsUnstruct)
***********************************KVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS**DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC****
Disordered Region (DISOPRED)
*************************************************GGM************************DKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF*************LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGAR*****************************VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR******
Disordered Region (DISEMBL)
METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL
Disordered Region (DISPRO)
************N**********LTWDVPPPLP*******************************************DKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	433	2.2.26 [Sep-21-2011]
P51566	467	Serine/threonine-protein	yes	no	0.979	0.907	0.836	0.0
P51567	427	Serine/threonine-protein	no	no	0.967	0.981	0.713	0.0
P51568	400	Serine/threonine-protein	no	no	0.898	0.972	0.640	1e-152
Q10156	690	Dual specificity protein	yes	no	0.785	0.492	0.468	1e-93
O35491	499	Dual specificity protein	yes	no	0.771	0.669	0.48	6e-89
P49760	499	Dual specificity protein	yes	no	0.773	0.671	0.478	8e-89
P49762	832	Serine/threonine-protein	no	no	0.787	0.409	0.470	8e-88
O35493	481	Dual specificity protein	no	no	0.769	0.692	0.475	2e-86
Q9HAZ1	481	Dual specificity protein	no	no	0.769	0.692	0.469	2e-86
P49759	484	Dual specificity protein	no	no	0.769	0.688	0.469	5e-84

>sp|P51566|AFC1_ARATH Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/429 (83%), Positives = 394/429 (91%), Gaps = 5/429 (1%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVL-----PALYCVQEFGNGGMPNY 55
           +ETQR +EFPH+ +DKRPRKRPRLTWD  PPL PP        P LY   EF +G +PN+
Sbjct: 17  LETQRNVEFPHRIVDKRPRKRPRLTWDAAPPLLPPPPPPTVFQPPLYYGPEFASGLVPNF 76

Query: 56  ACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNE 115
              +MFY  +PR GSPPWRPDDKDGHYVF +G+ LTPRY+ILSKMGEGTFGQV+ECFDN+
Sbjct: 77  VYPNMFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILSKMGEGTFGQVLECFDNK 136

Query: 116 KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL 175
            KE+VAIK++RSINKYREAAMIEIDVLQRL RHD+GG+RCVQIRNWFDYRNHICIVFEKL
Sbjct: 137 NKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRNWFDYRNHICIVFEKL 196

Query: 176 GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV 235
           GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA+MH+LRLIHTDLKPENILLVS+EY+K+
Sbjct: 197 GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAYMHDLRLIHTDLKPENILLVSSEYIKI 256

Query: 236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGW 295
           PDYKFLSR +KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH+Y+VSTRHYRAPEVILG+GW
Sbjct: 257 PDYKFLSRPTKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHNYIVSTRHYRAPEVILGVGW 316

Query: 296 NYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
           NYPCDLWS+GCILVELCSGEALFQTHENLEHLAMMERVLGPLP HMV+RADRR+EKYFRR
Sbjct: 317 NYPCDLWSIGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVLRADRRSEKYFRR 376

Query: 356 GARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKARE 415
           GA+LDWP+GATSRDS++AVWKL RLPNLIMQHVDHSAGDLIDLLQGLLRYDP ER KARE
Sbjct: 377 GAKLDWPEGATSRDSLKAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPTERFKARE 436

Query: 416 ALRHPFFTR 424
           AL HPFFTR
Sbjct: 437 ALNHPFFTR 445

Activator of yeast transcription factor, STE12.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 2EC: .EC: 1

>sp|P51567|AFC2_ARATH Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/430 (71%), Positives = 362/430 (84%), Gaps = 11/430 (2%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGN------GGMPN 54
           ME +R+ EFPH +MD+RPRKR RL WDV P     +V   ++C QE GN       G P+
Sbjct: 1   MEMERVHEFPHTHMDRRPRKRARLGWDVLPQATKAQV--GMFCGQEIGNISSFASSGAPS 58

Query: 55  YACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDN 114
              SS+    + R GSPPWR DDKDGHY+F +G++LTPRY+I SKMGEGTFGQV+EC+D 
Sbjct: 59  DNSSSLCVKGVARNGSPPWREDDKDGHYIFELGDDLTPRYKIYSKMGEGTFGQVLECWDR 118

Query: 115 EKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEK 174
           E+KE+VA+KIVR + KYREAAMIEI++LQ+L +HD GG RCVQIRNWFDYRNHICIVFEK
Sbjct: 119 ERKEMVAVKIVRGVKKYREAAMIEIEMLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEK 178

Query: 175 LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK 234
           LG SLYDFLRKN+YRSFPIDLVRE+G QLLE VAFMH+LR+IHTDLKPENILLVS++YVK
Sbjct: 179 LGSSLYDFLRKNNYRSFPIDLVREIGWQLLECVAFMHDLRMIHTDLKPENILLVSSDYVK 238

Query: 235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG 294
           +P+YK  SR  +D  Y K +PKSSAIK+IDFGSTT+E QD +Y+VSTRHYRAPEVILGLG
Sbjct: 239 IPEYKG-SRLQRDVCY-KRVPKSSAIKVIDFGSTTYERQDQTYIVSTRHYRAPEVILGLG 296

Query: 295 WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFR 354
           W+YPCD+WSVGCI+VELC+GEALFQTHENLEHLAMMERVLGP P  M+ + DR +EKY R
Sbjct: 297 WSYPCDVWSVGCIIVELCTGEALFQTHENLEHLAMMERVLGPFPQQMLKKVDRHSEKYVR 356

Query: 355 RGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAR 414
           RG RLDWPDGATSRDS++AV KL RL NLIMQHVDHSAG+LI+++QGLLR+DP+ER+ AR
Sbjct: 357 RG-RLDWPDGATSRDSLKAVLKLPRLQNLIMQHVDHSAGELINMVQGLLRFDPSERITAR 415

Query: 415 EALRHPFFTR 424
           EALRHPFF R
Sbjct: 416 EALRHPFFAR 425

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|P51568|AFC3_ARATH Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2

 Score =  537 bits (1384), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/412 (64%), Positives = 323/412 (78%), Gaps = 23/412 (5%)

Query: 12  KNMDK-RPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTGS 70
           ++MDK R RKRPR+TWD  P  P  K       ++  G+ G               R  S
Sbjct: 7   ESMDKERVRKRPRMTWDEAPAEPEAKRA----VIKGHGSDG---------------RILS 47

Query: 71  PPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK 130
           PP R DD+DGHYVF++ +NLTPRY+ILSKMGEGTFG+V+EC+D + KE VAIKI+RSI K
Sbjct: 48  PPLRDDDRDGHYVFSLRDNLTPRYKILSKMGEGTFGRVLECWDRDTKEYVAIKIIRSIKK 107

Query: 131 YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRS 190
           YR+AAMIEIDVLQ+L + D G TRCVQ++NWFDYRNHICIVFEKLGPSL+DFL++N Y +
Sbjct: 108 YRDAAMIEIDVLQKLVKSDKGRTRCVQMKNWFDYRNHICIVFEKLGPSLFDFLKRNKYSA 167

Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
           FP+ LVR+ G QLLESVA+MHEL+L+HTDLKPENILLVS+E VK+PD K   RS+ + ++
Sbjct: 168 FPLALVRDFGCQLLESVAYMHELQLVHTDLKPENILLVSSENVKLPDNK---RSAANETH 224

Query: 251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
           F+ LPKSSAIKLIDFGST  +++ H  +V TRHYR+PEVILGLGW+Y CDLWS+GCIL E
Sbjct: 225 FRCLPKSSAIKLIDFGSTVCDNRIHHSIVQTRHYRSPEVILGLGWSYQCDLWSIGCILFE 284

Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           LC+GEALFQTH+NLEHLAMMER LGPLP HM  +A R AEKYFRRG RL+WP+GA SR+S
Sbjct: 285 LCTGEALFQTHDNLEHLAMMERALGPLPEHMTRKASRGAEKYFRRGCRLNWPEGANSRES 344

Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           +RAV +L RL +++ +HVD++     DLL GLL YDP+ERL A EAL HPFF
Sbjct: 345 IRAVKRLDRLKDMVSKHVDNTRSRFADLLYGLLAYDPSERLTANEALDHPFF 396

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|Q10156|LKH1_SCHPO Dual specificity protein kinase lkh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lkh1 PE=1 SV=3

 Score =  343 bits (881), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/354 (46%), Positives = 237/354 (66%), Gaps = 14/354 (3%)

Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA 135
           DD DGHY          RY ++  +G GTFG+V++C+D       AIK+ R+I KYREA+
Sbjct: 344 DDDDGHYKVVPNSKFANRYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRAIPKYREAS 403

Query: 136 MIEIDVLQRLARHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPID 194
           +IE+ VLQ +A  D     +C+Q+R++FDYR HICIV +  G S++DFL+ N+Y  FP+ 
Sbjct: 404 LIELRVLQTIAHSDPTNENKCIQLRDYFDYRKHICIVTDLFGWSVFDFLKNNNYIPFPLK 463

Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVS--AEYVKVPDYKFLSRSSKDGSYFK 252
            ++ L +QL +SVAF+H L L+HTDLKPEN+LLVS  +  +++P Y+         +Y +
Sbjct: 464 HIQMLSQQLFKSVAFLHSLGLVHTDLKPENVLLVSNASRTIRLP-YR---------NYSQ 513

Query: 253 NLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC 312
            +  S  I+LIDFGS TFE + HS VVSTRHYRAPE+ILGLGW+YPCD+WS+GCILVEL 
Sbjct: 514 KVLNSCEIRLIDFGSATFEDEYHSSVVSTRHYRAPEIILGLGWSYPCDVWSIGCILVELF 573

Query: 313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
           +G+ALFQTHE+ EHL MME++LGP   +M+ R+ R ++++F+   ++ +P   T + S+ 
Sbjct: 574 TGQALFQTHEDSEHLCMMEKILGPFDRNMISRSSRTSQRFFKSDGKVRYPLSNTPKKSIN 633

Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV 426
            +  L  L   I          L+DLL+ +  YDP  R+ A+EAL HPFFT+ +
Sbjct: 634 YLQSLQTL-EQIFAVSSPEVALLLDLLKKVFVYDPKRRITAKEALWHPFFTQPI 686

Protein kinase that may act as a negative regulator of filamentous growth and flocculation. Appears to have a role in normal cell wall and septum formation and in cell seperation. May have antagonistic function in the regulation of beta-glucan distribution between the sites for cell wall and septum assembly.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|O35491|CLK2_MOUSE Dual specificity protein kinase CLK2 OS=Mus musculus GN=Clk2 PE=1 SV=2

 Score =  328 bits (840), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 168/350 (48%), Positives = 238/350 (68%), Gaps = 16/350 (4%)

Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKK-ELVAIKIVRSINKYREA 134
           DD +GH ++ +G+ L  RY I+S +GEGTFG+VV+C D+ +    VA+KI++++ KY+EA
Sbjct: 144 DDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGTQVALKIIKNVEKYKEA 203

Query: 135 AMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
           A +EI+VL+++   D      CVQ+ +WFDY  H+CI FE LG S +DFL+ N+Y  +PI
Sbjct: 204 ARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPI 263

Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
             VR +  QL ++V F+H+ +L HTDLKPENIL V+++Y    +   L +   + S    
Sbjct: 264 HQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYN---LEKKRDERS---- 316

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
             KS+A++++DFGS TF+H+ HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCI+ E   
Sbjct: 317 -VKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYV 375

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G  LFQTH+N EHLAMMER+LGP+P  M+ +   R +KYF RG RLDW +  ++   +R 
Sbjct: 376 GFTLFQTHDNREHLAMMERILGPVPSRMIRKT--RKQKYFYRG-RLDWDENTSAGRYVRE 432

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
             K LR   L  +  DH    L DL++ +L Y+PA+RL   EAL+HPFF 
Sbjct: 433 NCKPLR-RYLTSEAEDHHQ--LFDLIENMLEYEPAKRLTLGEALQHPFFA 479

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex. May be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing and can cause redistribution of SR proteins from speckles to a diffuse nucleoplasmic distribution. Acts as a suppressor of hepatic gluconeogenesis and glucose output by repressing PPARGC1A transcriptional activity on gluconeogenic genes via its phosphorylation. Phosphorylates PPP2R5B thereby stimulating the assembly of PP2A phosphatase with the PPP2R5B-AKT1 complex leading to dephosphorylation of AKT1. Phosphorylates: PTPN1, SRSF1 and SRSF3. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|P49760|CLK2_HUMAN Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1

 Score =  327 bits (839), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 168/351 (47%), Positives = 239/351 (68%), Gaps = 16/351 (4%)

Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKK-ELVAIKIVRSINKYREA 134
           DD +GH ++ +G+ L  RY I+S +GEGTFG+VV+C D+ +    VA+KI++++ KY+EA
Sbjct: 145 DDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 204

Query: 135 AMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
           A +EI+VL+++   D      CVQ+ +WFDY  H+CI FE LG S +DFL+ N+Y  +PI
Sbjct: 205 ARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPI 264

Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
             VR +  QL ++V F+H+ +L HTDLKPENIL V+++Y    +   L +   + S    
Sbjct: 265 HQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYN---LEKKRDERS---- 317

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
             KS+A++++DFGS TF+H+ HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCI+ E   
Sbjct: 318 -VKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYV 376

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G  LFQTH+N EHLAMMER+LGP+P  M+ +   R +KYF RG RLDW +  ++   +R 
Sbjct: 377 GFTLFQTHDNREHLAMMERILGPIPSRMIRKT--RKQKYFYRG-RLDWDENTSAGRYVRE 433

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             K LR   L  +  +H    L DL++ +L Y+PA+RL   EAL+HPFF R
Sbjct: 434 NCKPLR-RYLTSEAEEHHQ--LFDLIESMLEYEPAKRLTLGEALQHPFFAR 481

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex. May be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing and can cause redistribution of SR proteins from speckles to a diffuse nucleoplasmic distribution. Acts as a suppressor of hepatic gluconeogenesis and glucose output by repressing PPARGC1A transcriptional activity on gluconeogenic genes via its phosphorylation. Phosphorylates PPP2R5B thereby stimulating the assembly of PP2A phosphatase with the PPP2R5B-AKT1 complex leading to dephosphorylation of AKT1. Phosphorylates: PTPN1, SRSF1 and SRSF3. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|P49762|DOA_DROME Serine/threonine-protein kinase Doa OS=Drosophila melanogaster GN=Doa PE=1 SV=2

 Score =  324 bits (830), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 168/357 (47%), Positives = 238/357 (66%), Gaps = 16/357 (4%)

Query: 72  PWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY 131
           P   DD DGH ++  G+ L  RY+I++ +GEGTFG+VV+  D E+   +A+KI++++ KY
Sbjct: 457 PVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVKDMERDYCMALKIIKNVEKY 516

Query: 132 REAAMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRS 190
           REAA +EI+ L+++A+ D      CV++ +WFDY  H+CIVFE LG S++DFLR+N+Y  
Sbjct: 517 REAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFEMLGLSVFDFLRENNYEP 576

Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
           +P+D VR +  QL  SV F+H+ RL HTDLKPENIL V ++Y    ++K ++R  +    
Sbjct: 577 YPLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDYTSHYNHK-INREVRRV-- 633

Query: 251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
                K++ ++LIDFGS TF+H+ HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCIL E
Sbjct: 634 -----KNTDVRLIDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCILFE 688

Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMV---IRADRRAEKYFRRGARLDWPDGATS 367
           L  G  LFQTH+N EHLAMMER+LG +P+ M        +   KYF  G +LDW + +++
Sbjct: 689 LYLGITLFQTHDNREHLAMMERILGQIPYRMARNHTLYSKTKTKYFYHG-KLDWDEKSSA 747

Query: 368 RDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
              +R   K L L  L     DH   +L  L++ +L Y+P+ R+   EAL HPFF R
Sbjct: 748 GRYVRDHCKPLFLCQL-SDSEDHC--ELFSLIKKMLEYEPSSRITLGEALHHPFFDR 801

Negative regulator of the copia retrotransposon element of the white (w) gene. In the eye, it is required for normal pigmentation, photoreceptor cell development and for organization of interommatidial bristles. Also essential for embryonic segmentation and differentiation of the nervous system. Functions in the control of alternative splicing by phosphorylating the argine/serine-rich splicing factors, SR proteins.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|O35493|CLK4_MOUSE Dual specificity protein kinase CLK4 OS=Mus musculus GN=Clk4 PE=1 SV=1

 Score =  319 bits (818), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/349 (47%), Positives = 233/349 (66%), Gaps = 16/349 (4%)

Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKEL-VAIKIVRSINKYREA 134
           DD++GH +   G+ L  RY I+  +GEG FG+VVEC D+    L VA+KIV+++ +YREA
Sbjct: 141 DDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGLHVAVKIVKNVGRYREA 200

Query: 135 AMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
           A  EI VL+ L   D     RCVQ+  WFD+  H+CIVFE LG S YDF+++NS+  F I
Sbjct: 201 ARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENSFLPFQI 260

Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
           D +R++  Q+ +S+ F+H  +L HTDLKPENIL V ++YV     K+ S+  +D    KN
Sbjct: 261 DHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYV----VKYNSKMKRDERTLKN 316

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               + IK++DFGS T++ + HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCIL+E   
Sbjct: 317 ----TDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYL 372

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G  +FQTH++ EHLAMMER+LGP+P HM+ +  +R  KYF    +LDW + +++   +R 
Sbjct: 373 GFTVFQTHDSKEHLAMMERILGPIPAHMIQKTRKR--KYFHHN-QLDWDEHSSAGRYVRR 429

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             K L+    ++ H D     L DL++ +L YDPA R+   EAL+HPFF
Sbjct: 430 RCKPLK--EFMLCH-DEEHEKLFDLVRRMLEYDPARRITLDEALQHPFF 475

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex and may be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing. Phosphorylates SRSF1 and SRSF3. Required for the regulation of alternative splicing of MAPT/TAU. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|Q9HAZ1|CLK4_HUMAN Dual specificity protein kinase CLK4 OS=Homo sapiens GN=CLK4 PE=1 SV=1

 Score =  319 bits (818), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 164/349 (46%), Positives = 233/349 (66%), Gaps = 16/349 (4%)

Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKEL-VAIKIVRSINKYREA 134
           DD++GH +   G+ L  RY I+  +GEG FG+VVEC D+    + VA+KIV+++ +YREA
Sbjct: 141 DDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNVGRYREA 200

Query: 135 AMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
           A  EI VL+ L   D     RCVQ+  WFD+  H+CIVFE LG S YDF+++NS+  F I
Sbjct: 201 ARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENSFLPFQI 260

Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
           D +R++  Q+ +S+ F+H  +L HTDLKPENIL V ++YV     K+ S+  +D    KN
Sbjct: 261 DHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYV----VKYNSKMKRDERTLKN 316

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               + IK++DFGS T++ + HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCIL+E   
Sbjct: 317 ----TDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYL 372

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G  +FQTH++ EHLAMMER+LGP+P HM+ +  +R  KYF    +LDW + +++   +R 
Sbjct: 373 GFTVFQTHDSKEHLAMMERILGPIPQHMIQKTRKR--KYFHHN-QLDWDEHSSAGRYVRR 429

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             K L+    ++ H D     L DL++ +L YDP +R+   EAL+HPFF
Sbjct: 430 RCKPLK--EFMLCH-DEEHEKLFDLVRRMLEYDPTQRITLDEALQHPFF 475

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex and may be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing. Phosphorylates SRSF1 and SRSF3. Required for the regulation of alternative splicing of MAPT/TAU. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|P49759|CLK1_HUMAN Dual specificity protein kinase CLK1 OS=Homo sapiens GN=CLK1 PE=1 SV=2

 Score =  311 bits (798), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 164/349 (46%), Positives = 232/349 (66%), Gaps = 16/349 (4%)

Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKK-ELVAIKIVRSINKYREA 134
           DD++GH +   G+ L+ RY I+  +GEG FG+VVEC D++     VA+KIV+++++Y EA
Sbjct: 143 DDEEGHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEA 202

Query: 135 AMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
           A  EI VL+ L   D   T RCVQ+  WF++  HICIVFE LG S YDF+++N +  F +
Sbjct: 203 ARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRL 262

Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
           D +R++  Q+ +SV F+H  +L HTDLKPENIL V ++Y +  + K      +D     N
Sbjct: 263 DHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKI----KRDERTLIN 318

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                 IK++DFGS T++ + HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCIL+E   
Sbjct: 319 ----PDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYL 374

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G  +F TH++ EHLAMMER+LGPLP HM+ +  +R  KYF    RLDW + +++   +  
Sbjct: 375 GFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKR--KYFHHD-RLDWDEHSSAGRYVSR 431

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             K L+   ++ Q V+H    L DL+Q +L YDPA+R+  REAL+HPFF
Sbjct: 432 RCKPLK-EFMLSQDVEHER--LFDLIQKMLEYDPAKRITLREALKHPFF 477

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex and may be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing. Phosphorylates: SRSF1, SRSF3 and PTPN1. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells and adenovirus E1A pre-mRNA.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
225439856	429	PREDICTED: serine/threonine-protein kina	0.990	1.0	0.896	0.0
224138498	433	predicted protein [Populus trichocarpa]	0.986	0.986	0.879	0.0
449439980	433	PREDICTED: serine/threonine-protein kina	1.0	1.0	0.886	0.0
147800314	448	hypothetical protein VITISV_001943 [Viti	0.974	0.941	0.896	0.0
449439982	428	PREDICTED: serine/threonine-protein kina	0.988	1.0	0.887	0.0
356505140	427	PREDICTED: serine/threonine-protein kina	0.983	0.997	0.845	0.0
356505138	444	PREDICTED: serine/threonine-protein kina	1.0	0.975	0.833	0.0
255638456	444	unknown [Glycine max]	1.0	0.975	0.826	0.0
224088571	434	predicted protein [Populus trichocarpa]	0.960	0.958	0.831	0.0
15231839	467	serine/threonine-protein kinase AFC1 [Ar	0.979	0.907	0.836	0.0

>gi|225439856|ref|XP_002278124.1| PREDICTED: serine/threonine-protein kinase AFC1 [Vitis vinifera] gi|297741539|emb|CBI32671.3| unnamed protein product [Vitis vinifera]

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/433 (89%), Positives = 414/433 (95%), Gaps = 4/433 (0%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSM 60
           METQRI EFPHKNMDKRPRKRPRLTWD+PPPLPPPKV+P +YC QEF    + NY  SS+
Sbjct: 1   METQRITEFPHKNMDKRPRKRPRLTWDMPPPLPPPKVVPGMYCSQEF----VSNYPYSSL 56

Query: 61  FYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELV 120
           FY  + R GSPPWRPDDKDGHY+FAIGENLTPRYRI+SKMGEGTFGQV+ECFDN+KKE+V
Sbjct: 57  FYKGVTRNGSPPWRPDDKDGHYIFAIGENLTPRYRIISKMGEGTFGQVLECFDNDKKEVV 116

Query: 121 AIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLY 180
           AIKIVRSI+KYREAAMIEIDVLQ+LARHD+GGTRCVQIRNWFDYRNHICIVFEKLGPSLY
Sbjct: 117 AIKIVRSIHKYREAAMIEIDVLQKLARHDVGGTRCVQIRNWFDYRNHICIVFEKLGPSLY 176

Query: 181 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF 240
           DFLRKNSYRSFPIDLVRELGRQLLESVAFMH+LRLIHTDLKPENILLVS++Y+KVPDYKF
Sbjct: 177 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHDLRLIHTDLKPENILLVSSDYIKVPDYKF 236

Query: 241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCD 300
           LSR+ KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH+YVVSTRHYRAPEVILGLGWNYPCD
Sbjct: 237 LSRTIKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRHYRAPEVILGLGWNYPCD 296

Query: 301 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD 360
           LWSVGCIL+ELCSGEALFQTHENLEHLAMMERVLGPLP HMV+RADRRAEKYFRRGARLD
Sbjct: 297 LWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPQHMVLRADRRAEKYFRRGARLD 356

Query: 361 WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP 420
           WP+GATSR+SMRAVWKL RL NL+MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP
Sbjct: 357 WPEGATSRESMRAVWKLPRLQNLVMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP 416

Query: 421 FFTRDVRRCGFPL 433
           FFTRD RRCG+PL
Sbjct: 417 FFTRDARRCGYPL 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138498|ref|XP_002322829.1| predicted protein [Populus trichocarpa] gi|222867459|gb|EEF04590.1| predicted protein [Populus trichocarpa]

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/439 (87%), Positives = 409/439 (93%), Gaps = 12/439 (2%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDVPPP----LPPPKVLPALYCVQEFGNGG--MPN 54
           METQRI EFPHKNMDKRPRKR RLTWD+PPP    L P KV+P ++C QEFGNG   +PN
Sbjct: 1   METQRITEFPHKNMDKRPRKRQRLTWDIPPPPPPFLAPAKVVPGMFCGQEFGNGNGVIPN 60

Query: 55  YACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDN 114
           Y    +FY    R GSPPWRPDDKDGHYVFAIG+NLTPRYRILSKMGEGTFGQV+ECFDN
Sbjct: 61  YG---LFYN---RNGSPPWRPDDKDGHYVFAIGDNLTPRYRILSKMGEGTFGQVLECFDN 114

Query: 115 EKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEK 174
           EKKELVAIKIVRSI+KYREAAM EIDVLQRLARHDIG TRCVQIRNWFDYRNHICIVFEK
Sbjct: 115 EKKELVAIKIVRSIHKYREAAMTEIDVLQRLARHDIGSTRCVQIRNWFDYRNHICIVFEK 174

Query: 175 LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK 234
           LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH+L LIHTDLKPENILLVS+EY+K
Sbjct: 175 LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHDLHLIHTDLKPENILLVSSEYIK 234

Query: 235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG 294
           VPDYKFLSRS+KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG
Sbjct: 235 VPDYKFLSRSTKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG 294

Query: 295 WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFR 354
           WNYPCD+WSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLP HMV+RADRRAEKYFR
Sbjct: 295 WNYPCDIWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPQHMVVRADRRAEKYFR 354

Query: 355 RGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAR 414
           RG RLDWP+GATSR+SM+AV KL RLPNLIMQHVDHSAG+LIDLLQGLLR+DPAERLKAR
Sbjct: 355 RGMRLDWPEGATSRESMKAVMKLPRLPNLIMQHVDHSAGELIDLLQGLLRHDPAERLKAR 414

Query: 415 EALRHPFFTRDVRRCGFPL 433
           EALRHPFF+RD+RR G+PL
Sbjct: 415 EALRHPFFSRDLRRYGYPL 433

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439980|ref|XP_004137763.1| PREDICTED: serine/threonine-protein kinase AFC1-like isoform 1 [Cucumis sativus]

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/433 (88%), Positives = 408/433 (94%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSM 60
           METQRIIEFPHKNMDKRPRKR RL WD+PPP+PPPKVLP  YC QEFGNG +PNYA  SM
Sbjct: 1   METQRIIEFPHKNMDKRPRKRQRLAWDMPPPVPPPKVLPPPYCGQEFGNGQVPNYAYPSM 60

Query: 61  FYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELV 120
           +    PR GSPPWRPD+KDGHYVF+IGE LTPRY ILSKMGEGTFGQV+EC D+EKKE+V
Sbjct: 61  YCRGAPRVGSPPWRPDNKDGHYVFSIGECLTPRYTILSKMGEGTFGQVLECLDSEKKEVV 120

Query: 121 AIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLY 180
           AIKIVRSI+KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLY
Sbjct: 121 AIKIVRSISKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLY 180

Query: 181 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF 240
           DFLRKNSYRSFPIDLVRE  RQLLESVAFMHELRLIHTDLKPENILLVS+E+++VPD+KF
Sbjct: 181 DFLRKNSYRSFPIDLVREFARQLLESVAFMHELRLIHTDLKPENILLVSSEFIRVPDHKF 240

Query: 241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCD 300
           LSRS KDGSYFKNLPKS+AIKLIDFGSTT EHQDHSY+VSTRHYRAPEVILGLGWNYPCD
Sbjct: 241 LSRSVKDGSYFKNLPKSAAIKLIDFGSTTTEHQDHSYIVSTRHYRAPEVILGLGWNYPCD 300

Query: 301 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD 360
           LWSVGCILVELCSGEALFQTHENLEHLAMME+VLGPLP HMV+RADRRAEKYFRRG +LD
Sbjct: 301 LWSVGCILVELCSGEALFQTHENLEHLAMMEKVLGPLPQHMVLRADRRAEKYFRRGMQLD 360

Query: 361 WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP 420
           WP  ATSR+SMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP+ERL AREALRHP
Sbjct: 361 WPQSATSRESMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPSERLMAREALRHP 420

Query: 421 FFTRDVRRCGFPL 433
           FFTRD+RRCG+PL
Sbjct: 421 FFTRDLRRCGYPL 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800314|emb|CAN73108.1| hypothetical protein VITISV_001943 [Vitis vinifera]

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/426 (89%), Positives = 408/426 (95%), Gaps = 4/426 (0%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSM 60
           METQRI EFPHKNMDKRPRKRPRLTWD+PPPLPPPKV+P +YC QEF    + NY  SS+
Sbjct: 1   METQRITEFPHKNMDKRPRKRPRLTWDMPPPLPPPKVVPGMYCSQEF----VSNYPYSSL 56

Query: 61  FYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELV 120
           FY  + R GSPPWRPDDKDGHY+FAIGENLTPRYRI+SKMGEGTFGQV+ECFDN+KKE+V
Sbjct: 57  FYKGVTRNGSPPWRPDDKDGHYIFAIGENLTPRYRIISKMGEGTFGQVLECFDNDKKEVV 116

Query: 121 AIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLY 180
           AIKIVRSI+KYREAAMIEIDVLQ+LARHD+GGTRCVQIRNWFDYRNHICIVFEKLGPSLY
Sbjct: 117 AIKIVRSIHKYREAAMIEIDVLQKLARHDVGGTRCVQIRNWFDYRNHICIVFEKLGPSLY 176

Query: 181 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF 240
           DFLRKNSYRSFPIDLVRELGRQLLESVAFMH+LRLIHTDLKPENILLVS++Y+KVPDYKF
Sbjct: 177 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHDLRLIHTDLKPENILLVSSDYIKVPDYKF 236

Query: 241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCD 300
           LSR+ KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH+YVVSTRHYRAPEVILGLGWNYPCD
Sbjct: 237 LSRTIKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRHYRAPEVILGLGWNYPCD 296

Query: 301 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD 360
           LWSVGCIL+ELCSGEALFQTHENLEHLAMMERVLGPLP HMV+RADRRAEKYFRRGARLD
Sbjct: 297 LWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPQHMVLRADRRAEKYFRRGARLD 356

Query: 361 WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP 420
           WP+GATSR+SMRAVWKL RL NL+MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP
Sbjct: 357 WPEGATSRESMRAVWKLPRLQNLVMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP 416

Query: 421 FFTRDV 426
           FFTRD+
Sbjct: 417 FFTRDI 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439982|ref|XP_004137764.1| PREDICTED: serine/threonine-protein kinase AFC1-like isoform 2 [Cucumis sativus]

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/428 (88%), Positives = 403/428 (94%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSM 60
           METQRIIEFPHKNMDKRPRKR RL WD+PPP+PPPKVLP  YC QEFGNG +PNYA  SM
Sbjct: 1   METQRIIEFPHKNMDKRPRKRQRLAWDMPPPVPPPKVLPPPYCGQEFGNGQVPNYAYPSM 60

Query: 61  FYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELV 120
           +    PR GSPPWRPD+KDGHYVF+IGE LTPRY ILSKMGEGTFGQV+EC D+EKKE+V
Sbjct: 61  YCRGAPRVGSPPWRPDNKDGHYVFSIGECLTPRYTILSKMGEGTFGQVLECLDSEKKEVV 120

Query: 121 AIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLY 180
           AIKIVRSI+KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLY
Sbjct: 121 AIKIVRSISKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLY 180

Query: 181 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF 240
           DFLRKNSYRSFPIDLVRE  RQLLESVAFMHELRLIHTDLKPENILLVS+E+++VPD+KF
Sbjct: 181 DFLRKNSYRSFPIDLVREFARQLLESVAFMHELRLIHTDLKPENILLVSSEFIRVPDHKF 240

Query: 241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCD 300
           LSRS KDGSYFKNLPKS+AIKLIDFGSTT EHQDHSY+VSTRHYRAPEVILGLGWNYPCD
Sbjct: 241 LSRSVKDGSYFKNLPKSAAIKLIDFGSTTTEHQDHSYIVSTRHYRAPEVILGLGWNYPCD 300

Query: 301 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD 360
           LWSVGCILVELCSGEALFQTHENLEHLAMME+VLGPLP HMV+RADRRAEKYFRRG +LD
Sbjct: 301 LWSVGCILVELCSGEALFQTHENLEHLAMMEKVLGPLPQHMVLRADRRAEKYFRRGMQLD 360

Query: 361 WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP 420
           WP  ATSR+SMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP+ERL AREALRHP
Sbjct: 361 WPQSATSRESMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPSERLMAREALRHP 420

Query: 421 FFTRDVRR 428
           FFTRD+RR
Sbjct: 421 FFTRDLRR 428

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505140|ref|XP_003521350.1| PREDICTED: serine/threonine-protein kinase AFC1-like isoform 2 [Glycine max]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/434 (84%), Positives = 399/434 (91%), Gaps = 8/434 (1%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSM 60
           METQRIIEFPH+NMDKRPRK+ RLTWD+        VLP +YC QE GNG +PN+A  S+
Sbjct: 1   METQRIIEFPHRNMDKRPRKKQRLTWDM-------HVLPTMYCKQEVGNGVVPNHAYPSL 53

Query: 61  FYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELV 120
           FY  +PR GSPPWRPDDKDGHYVFA+GENLTPRY+ILSKMGEGTFGQV+EC DNEK+E+V
Sbjct: 54  FYRGMPRNGSPPWRPDDKDGHYVFAVGENLTPRYKILSKMGEGTFGQVLECLDNEKEEIV 113

Query: 121 AIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLY 180
           AIK+VRSINKYREAA  EI+VL RLARHD+ G  CVQIRNWFDYRNHICIVFEKLGPSLY
Sbjct: 114 AIKVVRSINKYREAARTEIEVLLRLARHDVDGAHCVQIRNWFDYRNHICIVFEKLGPSLY 173

Query: 181 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF 240
           DFLRKNSYRSFPIDLVRE GRQLLESVAFMH+L LIHTDLKPENILL+S+E++KVPDYKF
Sbjct: 174 DFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLISSEFIKVPDYKF 233

Query: 241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCD 300
           LSR++KDGSYFKNLPKSSAIKLIDFGST+FEHQDHSYVVSTRHYRAPEVILGLGWNYPCD
Sbjct: 234 LSRNTKDGSYFKNLPKSSAIKLIDFGSTSFEHQDHSYVVSTRHYRAPEVILGLGWNYPCD 293

Query: 301 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD 360
           LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLP HMV+RADRRAEKYF+RG RL 
Sbjct: 294 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVVRADRRAEKYFKRGTRLS 353

Query: 361 WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP 420
           WPD +TSR+SMRAVWKL RLPNLIMQHVDHSAGDLIDLLQGLLRYDP+ERLKA+EALRHP
Sbjct: 354 WPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPSERLKAKEALRHP 413

Query: 421 -FFTRDVRRCGFPL 433
            FFTRD +R G+PL
Sbjct: 414 FFFTRDTKRYGYPL 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505138|ref|XP_003521349.1| PREDICTED: serine/threonine-protein kinase AFC1-like isoform 1 [Glycine max]

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/444 (83%), Positives = 403/444 (90%), Gaps = 11/444 (2%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDV----------PPPLPPPKVLPALYCVQEFGNG 50
           METQRIIEFPH+NMDKRPRK+ RLTWD+          P P P  +VLP +YC QE GNG
Sbjct: 1   METQRIIEFPHRNMDKRPRKKQRLTWDMHVPPPPPPPPPLPPPKLQVLPTMYCKQEVGNG 60

Query: 51  GMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVE 110
            +PN+A  S+FY  +PR GSPPWRPDDKDGHYVFA+GENLTPRY+ILSKMGEGTFGQV+E
Sbjct: 61  VVPNHAYPSLFYRGMPRNGSPPWRPDDKDGHYVFAVGENLTPRYKILSKMGEGTFGQVLE 120

Query: 111 CFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI 170
           C DNEK+E+VAIK+VRSINKYREAA  EI+VL RLARHD+ G  CVQIRNWFDYRNHICI
Sbjct: 121 CLDNEKEEIVAIKVVRSINKYREAARTEIEVLLRLARHDVDGAHCVQIRNWFDYRNHICI 180

Query: 171 VFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSA 230
           VFEKLGPSLYDFLRKNSYRSFPIDLVRE GRQLLESVAFMH+L LIHTDLKPENILL+S+
Sbjct: 181 VFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLISS 240

Query: 231 EYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVI 290
           E++KVPDYKFLSR++KDGSYFKNLPKSSAIKLIDFGST+FEHQDHSYVVSTRHYRAPEVI
Sbjct: 241 EFIKVPDYKFLSRNTKDGSYFKNLPKSSAIKLIDFGSTSFEHQDHSYVVSTRHYRAPEVI 300

Query: 291 LGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAE 350
           LGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLP HMV+RADRRAE
Sbjct: 301 LGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVVRADRRAE 360

Query: 351 KYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER 410
           KYF+RG RL WPD +TSR+SMRAVWKL RLPNLIMQHVDHSAGDLIDLLQGLLRYDP+ER
Sbjct: 361 KYFKRGTRLSWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPSER 420

Query: 411 LKAREALRHP-FFTRDVRRCGFPL 433
           LKA+EALRHP FFTRD +R G+PL
Sbjct: 421 LKAKEALRHPFFFTRDTKRYGYPL 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638456|gb|ACU19537.1| unknown [Glycine max]

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/444 (82%), Positives = 400/444 (90%), Gaps = 11/444 (2%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDV----------PPPLPPPKVLPALYCVQEFGNG 50
           METQRIIEFPH+NMDKRPRK+ RLTWD+          P P P  +VLP +YC QE GNG
Sbjct: 1   METQRIIEFPHRNMDKRPRKKQRLTWDMHVPPPPPPPPPLPPPKLQVLPTMYCKQEVGNG 60

Query: 51  GMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVE 110
            +PN+A  S+FY  +PR GSPPWRPDDKDGHYVFA+GENLTPRY+ILSKMGEGTFGQV+E
Sbjct: 61  VVPNHAYPSLFYRGMPRNGSPPWRPDDKDGHYVFAVGENLTPRYKILSKMGEGTFGQVLE 120

Query: 111 CFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI 170
           C DNEK+E+VAIK+VRSINKYREAA  EI+VL RLARHD+ G  CVQIRNWFDYRNHICI
Sbjct: 121 CLDNEKEEIVAIKVVRSINKYREAARTEIEVLLRLARHDVDGAHCVQIRNWFDYRNHICI 180

Query: 171 VFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSA 230
           VFEKLGPSLYDFLRKN YRSFPIDLVRE GRQLLESVAFMH+L LIHTDLKPENILL+S+
Sbjct: 181 VFEKLGPSLYDFLRKNCYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLISS 240

Query: 231 EYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVI 290
           E++KVPDYKFLSR++KDGSYFKNLPKSSAIKLIDFGST+FEHQDHSYVVSTRHYRAPEVI
Sbjct: 241 EFIKVPDYKFLSRNTKDGSYFKNLPKSSAIKLIDFGSTSFEHQDHSYVVSTRHYRAPEVI 300

Query: 291 LGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAE 350
           LGLGWNYPCDLWSVGCILVELCSGEALFQTHENL HLAMMERVLGPLP HMV+RADRRAE
Sbjct: 301 LGLGWNYPCDLWSVGCILVELCSGEALFQTHENLGHLAMMERVLGPLPPHMVVRADRRAE 360

Query: 351 KYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER 410
           KYF+RG RL WPD +TSR+SMRAVWKL RLPNLIMQHVDH AGDLIDLLQGLLRYDP+ER
Sbjct: 361 KYFKRGTRLSWPDSSTSRESMRAVWKLPRLPNLIMQHVDHFAGDLIDLLQGLLRYDPSER 420

Query: 411 LKAREALRHP-FFTRDVRRCGFPL 433
           LKA+EALRHP FFTRD +R G+PL
Sbjct: 421 LKAKEALRHPFFFTRDTKRYGYPL 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088571|ref|XP_002308478.1| predicted protein [Populus trichocarpa] gi|222854454|gb|EEE92001.1| predicted protein [Populus trichocarpa]

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/451 (83%), Positives = 396/451 (87%), Gaps = 35/451 (7%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPP------------------PKVLPALY 42
           METQRI EFPHKNMDKRP+KR RLTW VPPPL                     +V+P ++
Sbjct: 1   METQRITEFPHKNMDKRPKKRQRLTWGVPPPLLAPPKKSETFNFNFDFNFLLQQVIPGMF 60

Query: 43  CVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGE 102
           C   F NG                  GSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGE
Sbjct: 61  CGYGFYNG-----------------NGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGE 103

Query: 103 GTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF 162
           GTFGQV+ECFDNEKKE VAIKIVRSI+KYREAAMIEIDVLQRLARHD G TRCVQIRNWF
Sbjct: 104 GTFGQVLECFDNEKKEGVAIKIVRSIHKYREAAMIEIDVLQRLARHDFGSTRCVQIRNWF 163

Query: 163 DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKP 222
           DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH+LRLIHTDLKP
Sbjct: 164 DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHDLRLIHTDLKP 223

Query: 223 ENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTR 282
           ENILLVS+EY+KVPDYKFLSRS+KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH+YVVSTR
Sbjct: 224 ENILLVSSEYIKVPDYKFLSRSTKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTR 283

Query: 283 HYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMV 342
           HYRAPEV+LGLGWNYPCD+WSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLP HM 
Sbjct: 284 HYRAPEVVLGLGWNYPCDIWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPQHMA 343

Query: 343 IRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL 402
           IRADRRAEKYFRRGARLDWP+GATSR+SMRAV KL RLPN+IMQHVDHSAGDLIDLLQGL
Sbjct: 344 IRADRRAEKYFRRGARLDWPEGATSRESMRAVTKLPRLPNIIMQHVDHSAGDLIDLLQGL 403

Query: 403 LRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
           LRYDPAERLKAREALRHPFF+RD+RR G+P+
Sbjct: 404 LRYDPAERLKAREALRHPFFSRDLRRYGYPV 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231839|ref|NP_190925.1| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] gi|42570490|ref|NP_850695.2| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] gi|79314891|ref|NP_001030853.1| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] gi|26454604|sp|P51566.2|AFC1_ARATH RecName: Full=Serine/threonine-protein kinase AFC1 gi|642132|dbj|BAA08215.1| protein kinase [Arabidopsis thaliana] gi|6729508|emb|CAB67664.1| protein kinase (AME2/AFC1) [Arabidopsis thaliana] gi|222424132|dbj|BAH20025.1| AT3G53570 [Arabidopsis thaliana] gi|332645589|gb|AEE79110.1| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] gi|332645590|gb|AEE79111.1| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] gi|332645591|gb|AEE79112.1| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana]

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/429 (83%), Positives = 394/429 (91%), Gaps = 5/429 (1%)

Query: 1   METQRIIEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVL-----PALYCVQEFGNGGMPNY 55
           +ETQR +EFPH+ +DKRPRKRPRLTWD  PPL PP        P LY   EF +G +PN+
Sbjct: 17  LETQRNVEFPHRIVDKRPRKRPRLTWDAAPPLLPPPPPPTVFQPPLYYGPEFASGLVPNF 76

Query: 56  ACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNE 115
              +MFY  +PR GSPPWRPDDKDGHYVF +G+ LTPRY+ILSKMGEGTFGQV+ECFDN+
Sbjct: 77  VYPNMFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILSKMGEGTFGQVLECFDNK 136

Query: 116 KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL 175
            KE+VAIK++RSINKYREAAMIEIDVLQRL RHD+GG+RCVQIRNWFDYRNHICIVFEKL
Sbjct: 137 NKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRNWFDYRNHICIVFEKL 196

Query: 176 GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV 235
           GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA+MH+LRLIHTDLKPENILLVS+EY+K+
Sbjct: 197 GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAYMHDLRLIHTDLKPENILLVSSEYIKI 256

Query: 236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGW 295
           PDYKFLSR +KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH+Y+VSTRHYRAPEVILG+GW
Sbjct: 257 PDYKFLSRPTKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHNYIVSTRHYRAPEVILGVGW 316

Query: 296 NYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
           NYPCDLWS+GCILVELCSGEALFQTHENLEHLAMMERVLGPLP HMV+RADRR+EKYFRR
Sbjct: 317 NYPCDLWSIGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVLRADRRSEKYFRR 376

Query: 356 GARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKARE 415
           GA+LDWP+GATSRDS++AVWKL RLPNLIMQHVDHSAGDLIDLLQGLLRYDP ER KARE
Sbjct: 377 GAKLDWPEGATSRDSLKAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPTERFKARE 436

Query: 416 ALRHPFFTR 424
           AL HPFFTR
Sbjct: 437 ALNHPFFTR 445

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
TAIR|locus:2084006	467	FC1 "FUS3-complementing gene 1	0.979	0.907	0.822	2.2e-199
TAIR|locus:2121984	427	FC2 "FUS3-complementing gene 2	0.967	0.981	0.706	1.4e-167
TAIR|locus:2125622	400	AME3 [Arabidopsis thaliana (ta	0.826	0.895	0.686	9.1e-141
UNIPROTKB|F1RLJ5	500	CLK2 "Uncharacterized protein"	0.773	0.67	0.487	6.9e-86
POMBASE|SPAC1D4.11c	690	lkh1 "dual specificity protein	0.803	0.504	0.464	6.9e-86
UNIPROTKB|E1B9Q2	500	CLK2 "Uncharacterized protein"	0.773	0.67	0.487	8.9e-86
UNIPROTKB|F1P919	612	CLK2 "Uncharacterized protein"	0.773	0.547	0.487	8.9e-86
UNIPROTKB|B1AVT0	497	CLK2 "Dual-specificity protein	0.773	0.674	0.487	8.9e-86
UNIPROTKB|P49760	499	CLK2 "Dual specificity protein	0.773	0.671	0.487	8.9e-86
MGI|MGI:1098669	499	Clk2 "CDC-like kinase 2" [Mus	0.769	0.667	0.489	1.4e-85

TAIR|locus:2084006 FC1 "FUS3-complementing gene 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1930 (684.5 bits), Expect = 2.2e-199, P = 2.2e-199
 Identities = 353/429 (82%), Positives = 388/429 (90%)

Query:     1 METQRIIEFPHKNMDKRPRKRPRLTWDXXXXXXX-----XXXXXALYCVQEFGNGGMPNY 55
             +ETQR +EFPH+ +DKRPRKRPRLTWD                  LY   EF +G +PN+
Sbjct:    17 LETQRNVEFPHRIVDKRPRKRPRLTWDAAPPLLPPPPPPTVFQPPLYYGPEFASGLVPNF 76

Query:    56 ACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNE 115
                +MFY  +PR GSPPWRPDDKDGHYVF +G+ LTPRY+ILSKMGEGTFGQV+ECFDN+
Sbjct:    77 VYPNMFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILSKMGEGTFGQVLECFDNK 136

Query:   116 KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL 175
              KE+VAIK++RSINKYREAAMIEIDVLQRL RHD+GG+RCVQIRNWFDYRNHICIVFEKL
Sbjct:   137 NKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRNWFDYRNHICIVFEKL 196

Query:   176 GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV 235
             GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA+MH+LRLIHTDLKPENILLVS+EY+K+
Sbjct:   197 GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAYMHDLRLIHTDLKPENILLVSSEYIKI 256

Query:   236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGW 295
             PDYKFLSR +KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH+Y+VSTRHYRAPEVILG+GW
Sbjct:   257 PDYKFLSRPTKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHNYIVSTRHYRAPEVILGVGW 316

Query:   296 NYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
             NYPCDLWS+GCILVELCSGEALFQTHENLEHLAMMERVLGPLP HMV+RADRR+EKYFRR
Sbjct:   317 NYPCDLWSIGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVLRADRRSEKYFRR 376

Query:   356 GARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKARE 415
             GA+LDWP+GATSRDS++AVWKL RLPNLIMQHVDHSAGDLIDLLQGLLRYDP ER KARE
Sbjct:   377 GAKLDWPEGATSRDSLKAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPTERFKARE 436

Query:   416 ALRHPFFTR 424
             AL HPFFTR
Sbjct:   437 ALNHPFFTR 445

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045727 "positive regulation of translation" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2121984 FC2 "FUS3-complementing gene 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1630 (578.8 bits), Expect = 1.4e-167, P = 1.4e-167
 Identities = 304/430 (70%), Positives = 358/430 (83%)

Query:     1 METQRIIEFPHKNMDKRPRKRPRLTWDXXXXXXXXXXXXALYCVQEFGN------GGMPN 54
             ME +R+ EFPH +MD+RPRKR RL WD             ++C QE GN       G P+
Sbjct:     1 MEMERVHEFPHTHMDRRPRKRARLGWDVLPQATKAQV--GMFCGQEIGNISSFASSGAPS 58

Query:    55 YACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDN 114
                SS+    + R GSPPWR DDKDGHY+F +G++LTPRY+I SKMGEGTFGQV+EC+D 
Sbjct:    59 DNSSSLCVKGVARNGSPPWREDDKDGHYIFELGDDLTPRYKIYSKMGEGTFGQVLECWDR 118

Query:   115 EKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEK 174
             E+KE+VA+KIVR + KYREAAMIEI++LQ+L +HD GG RCVQIRNWFDYRNHICIVFEK
Sbjct:   119 ERKEMVAVKIVRGVKKYREAAMIEIEMLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEK 178

Query:   175 LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK 234
             LG SLYDFLRKN+YRSFPIDLVRE+G QLLE VAFMH+LR+IHTDLKPENILLVS++YVK
Sbjct:   179 LGSSLYDFLRKNNYRSFPIDLVREIGWQLLECVAFMHDLRMIHTDLKPENILLVSSDYVK 238

Query:   235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG 294
             +P+YK  SR  +D  Y K +PKSSAIK+IDFGSTT+E QD +Y+VSTRHYRAPEVILGLG
Sbjct:   239 IPEYKG-SRLQRDVCY-KRVPKSSAIKVIDFGSTTYERQDQTYIVSTRHYRAPEVILGLG 296

Query:   295 WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFR 354
             W+YPCD+WSVGCI+VELC+GEALFQTHENLEHLAMMERVLGP P  M+ + DR +EKY R
Sbjct:   297 WSYPCDVWSVGCIIVELCTGEALFQTHENLEHLAMMERVLGPFPQQMLKKVDRHSEKYVR 356

Query:   355 RGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAR 414
             RG RLDWPDGATSRDS++AV KL RL NLIMQHVDHSAG+LI+++QGLLR+DP+ER+ AR
Sbjct:   357 RG-RLDWPDGATSRDSLKAVLKLPRLQNLIMQHVDHSAGELINMVQGLLRFDPSERITAR 415

Query:   415 EALRHPFFTR 424
             EALRHPFF R
Sbjct:   416 EALRHPFFAR 425

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0004672 "protein kinase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006397 "mRNA processing" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0045727 "positive regulation of translation" evidence=RCA

TAIR|locus:2125622 AME3 [Arabidopsis thaliana (taxid:3702)]

 Score = 1335 (475.0 bits), Expect = 9.1e-141, Sum P(2) = 9.1e-141
 Identities = 248/361 (68%), Positives = 303/361 (83%)

Query:    62 YGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVA 121
             +G+  R  SPP R DD+DGHYVF++ +NLTPRY+ILSKMGEGTFG+V+EC+D + KE VA
Sbjct:    39 HGSDGRILSPPLRDDDRDGHYVFSLRDNLTPRYKILSKMGEGTFGRVLECWDRDTKEYVA 98

Query:   122 IKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYD 181
             IKI+RSI KYR+AAMIEIDVLQ+L + D G TRCVQ++NWFDYRNHICIVFEKLGPSL+D
Sbjct:    99 IKIIRSIKKYRDAAMIEIDVLQKLVKSDKGRTRCVQMKNWFDYRNHICIVFEKLGPSLFD 158

Query:   182 FLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL 241
             FL++N Y +FP+ LVR+ G QLLESVA+MHEL+L+HTDLKPENILLVS+E VK+PD K  
Sbjct:   159 FLKRNKYSAFPLALVRDFGCQLLESVAYMHELQLVHTDLKPENILLVSSENVKLPDNK-- 216

Query:   242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDL 301
              RS+ + ++F+ LPKSSAIKLIDFGST  +++ H  +V TRHYR+PEVILGLGW+Y CDL
Sbjct:   217 -RSAANETHFRCLPKSSAIKLIDFGSTVCDNRIHHSIVQTRHYRSPEVILGLGWSYQCDL 275

Query:   302 WSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDW 361
             WS+GCIL ELC+GEALFQTH+NLEHLAMMER LGPLP HM  +A R AEKYFRRG RL+W
Sbjct:   276 WSIGCILFELCTGEALFQTHDNLEHLAMMERALGPLPEHMTRKASRGAEKYFRRGCRLNW 335

Query:   362 PDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
             P+GA SR+S+RAV +L RL +++ +HVD++     DLL GLL YDP+ERL A EAL HPF
Sbjct:   336 PEGANSRESIRAVKRLDRLKDMVSKHVDNTRSRFADLLYGLLAYDPSERLTANEALDHPF 395

Query:   422 F 422
             F
Sbjct:   396 F 396

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0045727 "positive regulation of translation" evidence=RCA

UNIPROTKB|F1RLJ5 CLK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 171/351 (48%), Positives = 240/351 (68%)

Query:    76 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKEL-VAIKIVRSINKYREA 134
             DD +GH ++ +G+ L  RY I+S +GEGTFG+VV+C D+ +    VA+KI++++ KY+EA
Sbjct:   145 DDAEGHLIYHVGDWLQERYEIISTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 204

Query:   135 AMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
             A +EI+VL+++   D      CVQ+ +WFDY  H+CI FE LG S +DFL+ N+Y  +PI
Sbjct:   205 ARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPI 264

Query:   194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
               VR +  QL ++V F+H+ +L HTDLKPENIL V+++Y     Y  L +   + S    
Sbjct:   265 HQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELT--YN-LEKKRDERSV--- 318

Query:   254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               KS+A++++DFGS TF+H+ HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCI+ E   
Sbjct:   319 --KSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYV 376

Query:   314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
             G  LFQTH+N EHLAMMER+LGP+P  M IR  R+ +KYF RG RLDW +  ++   +R 
Sbjct:   377 GFTLFQTHDNREHLAMMERILGPIPSRM-IRKTRK-QKYFYRG-RLDWDENTSAGRYVRE 433

Query:   374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
               K LR   L  +  +H    L DL++ +L Y+PA+RL   EAL+HPFF R
Sbjct:   434 NCKPLRR-YLTSEAEEHH--QLFDLIESMLEYEPAKRLTLGEALQHPFFAR 481

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0045721 "negative regulation of gluconeogenesis" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

POMBASE|SPAC1D4.11c lkh1 "dual specificity protein kinase Lkh1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 168/362 (46%), Positives = 240/362 (66%)

Query:    68 TGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS 127
             T   P   DD DGHY          RY ++  +G GTFG+V++C+D       AIK+ R+
Sbjct:   336 TAFDPSTFDDDDGHYKVVPNSKFANRYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRA 395

Query:   128 INKYREAAMIEIDVLQRLARHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKN 186
             I KYREA++IE+ VLQ +A  D     +C+Q+R++FDYR HICIV +  G S++DFL+ N
Sbjct:   396 IPKYREASLIELRVLQTIAHSDPTNENKCIQLRDYFDYRKHICIVTDLFGWSVFDFLKNN 455

Query:   187 SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS--AEYVKVPDYKFLSRS 244
             +Y  FP+  ++ L +QL +SVAF+H L L+HTDLKPEN+LLVS  +  +++P Y+     
Sbjct:   456 NYIPFPLKHIQMLSQQLFKSVAFLHSLGLVHTDLKPENVLLVSNASRTIRLP-YR----- 509

Query:   245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSV 304
                 +Y + +  S  I+LIDFGS TFE + HS VVSTRHYRAPE+ILGLGW+YPCD+WS+
Sbjct:   510 ----NYSQKVLNSCEIRLIDFGSATFEDEYHSSVVSTRHYRAPEIILGLGWSYPCDVWSI 565

Query:   305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDG 364
             GCILVEL +G+ALFQTHE+ EHL MME++LGP   +M+ R+ R ++++F+   ++ +P  
Sbjct:   566 GCILVELFTGQALFQTHEDSEHLCMMEKILGPFDRNMISRSSRTSQRFFKSDGKVRYPLS 625

Query:   365 ATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
              T + S+  +  L  L  +        A  L+DLL+ +  YDP  R+ A+EAL HPFFT+
Sbjct:   626 NTPKKSINYLQSLQTLEQIFAVSSPEVAL-LLDLLKKVFVYDPKRRITAKEALWHPFFTQ 684

Query:   425 DV 426
              +
Sbjct:   685 PI 686

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IMP;IDA

GO:0006468 "protein phosphorylation" evidence=IC

GO:0010590 "regulation of cytokinetic cell separation" evidence=IMP

GO:0032955 "regulation of barrier septum assembly" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IMP

GO:0051519 "activation of bipolar cell growth" evidence=IMP

GO:0060237 "regulation of fungal-type cell wall organization" evidence=IMP

GO:0060257 "negative regulation of flocculation" evidence=IMP

GO:0060258 "negative regulation of filamentous growth" evidence=IMP

UNIPROTKB|E1B9Q2 CLK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 171/351 (48%), Positives = 240/351 (68%)

Query:    76 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKEL-VAIKIVRSINKYREA 134
             DD +GH ++ +G+ L  RY I+S +GEGTFG+VV+C D+ +    VA+KI++++ KY+EA
Sbjct:   145 DDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 204

Query:   135 AMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
             A +EI+VL+++   D      CVQ+ +WFDY  H+CI FE LG S +DFL+ N+Y  +PI
Sbjct:   205 ARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPI 264

Query:   194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
               VR +  QL ++V F+H+ +L HTDLKPENIL V+++Y     Y  L +   + S    
Sbjct:   265 HQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELT--YN-LEKKRDERSV--- 318

Query:   254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               KS+A++++DFGS TF+H+ HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCI+ E   
Sbjct:   319 --KSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYV 376

Query:   314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
             G  LFQTH+N EHLAMMER+LGP+P  M IR  R+ +KYF RG RLDW +  ++   +R 
Sbjct:   377 GFTLFQTHDNREHLAMMERILGPIPSRM-IRKTRK-QKYFYRG-RLDWDENTSAGRYVRE 433

Query:   374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
               K LR   L  +  +H    L DL++ +L Y+PA+RL   EAL+HPFF R
Sbjct:   434 NCKPLRR-YLTSEAEEHH--QLFDLIESMLEYEPAKRLTLGEALQHPFFAR 481

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0045721 "negative regulation of gluconeogenesis" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1P919 CLK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 171/351 (48%), Positives = 240/351 (68%)

Query:    76 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKEL-VAIKIVRSINKYREA 134
             DD +GH ++ +G+ L  RY I+S +GEGTFG+VV+C D+ +    VA+KI++++ KY+EA
Sbjct:   257 DDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 316

Query:   135 AMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
             A +EI+VL+++   D      CVQ+ +WFDY  H+CI FE LG S +DFL+ N+Y  +PI
Sbjct:   317 ARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPI 376

Query:   194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
               VR +  QL ++V F+H+ +L HTDLKPENIL V+++Y     Y  L +   + S    
Sbjct:   377 HQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELT--YN-LEKKRDERSV--- 430

Query:   254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               KS+A++++DFGS TF+H+ HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCI+ E   
Sbjct:   431 --KSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYV 488

Query:   314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
             G  LFQTH+N EHLAMMER+LGP+P  M IR  R+ +KYF RG RLDW +  ++   +R 
Sbjct:   489 GFTLFQTHDNREHLAMMERILGPIPSRM-IRKTRK-QKYFYRG-RLDWDENTSAGRYVRE 545

Query:   374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
               K LR   L  +  +H    L DL++ +L Y+PA+RL   EAL+HPFF R
Sbjct:   546 NCKPLRR-YLTSEAEEHH--QLFDLIESMLEYEPAKRLTLGEALQHPFFAR 593

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|B1AVT0 CLK2 "Dual-specificity protein kinase CLK2" [Homo sapiens (taxid:9606)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 171/351 (48%), Positives = 240/351 (68%)

Query:    76 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKEL-VAIKIVRSINKYREA 134
             DD +GH ++ +G+ L  RY I+S +GEGTFG+VV+C D+ +    VA+KI++++ KY+EA
Sbjct:   143 DDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 202

Query:   135 AMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
             A +EI+VL+++   D      CVQ+ +WFDY  H+CI FE LG S +DFL+ N+Y  +PI
Sbjct:   203 ARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPI 262

Query:   194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
               VR +  QL ++V F+H+ +L HTDLKPENIL V+++Y     Y  L +   + S    
Sbjct:   263 HQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELT--YN-LEKKRDERSV--- 316

Query:   254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               KS+A++++DFGS TF+H+ HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCI+ E   
Sbjct:   317 --KSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYV 374

Query:   314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
             G  LFQTH+N EHLAMMER+LGP+P  M IR  R+ +KYF RG RLDW +  ++   +R 
Sbjct:   375 GFTLFQTHDNREHLAMMERILGPIPSRM-IRKTRK-QKYFYRG-RLDWDENTSAGRYVRE 431

Query:   374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
               K LR   L  +  +H    L DL++ +L Y+PA+RL   EAL+HPFF R
Sbjct:   432 NCKPLRR-YLTSEAEEHH--QLFDLIESMLEYEPAKRLTLGEALQHPFFAR 479

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P49760 CLK2 "Dual specificity protein kinase CLK2" [Homo sapiens (taxid:9606)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 171/351 (48%), Positives = 240/351 (68%)

Query:    76 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKEL-VAIKIVRSINKYREA 134
             DD +GH ++ +G+ L  RY I+S +GEGTFG+VV+C D+ +    VA+KI++++ KY+EA
Sbjct:   145 DDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 204

Query:   135 AMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
             A +EI+VL+++   D      CVQ+ +WFDY  H+CI FE LG S +DFL+ N+Y  +PI
Sbjct:   205 ARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPI 264

Query:   194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
               VR +  QL ++V F+H+ +L HTDLKPENIL V+++Y     Y  L +   + S    
Sbjct:   265 HQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELT--YN-LEKKRDERSV--- 318

Query:   254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               KS+A++++DFGS TF+H+ HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCI+ E   
Sbjct:   319 --KSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYV 376

Query:   314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
             G  LFQTH+N EHLAMMER+LGP+P  M IR  R+ +KYF RG RLDW +  ++   +R 
Sbjct:   377 GFTLFQTHDNREHLAMMERILGPIPSRM-IRKTRK-QKYFYRG-RLDWDENTSAGRYVRE 433

Query:   374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
               K LR   L  +  +H    L DL++ +L Y+PA+RL   EAL+HPFF R
Sbjct:   434 NCKPLRR-YLTSEAEEHH--QLFDLIESMLEYEPAKRLTLGEALQHPFFAR 481

GO:0005524 "ATP binding" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IDA

GO:0010212 "response to ionizing radiation" evidence=IMP

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0045721 "negative regulation of gluconeogenesis" evidence=ISS

GO:0046777 "protein autophosphorylation" evidence=ISS

MGI|MGI:1098669 Clk2 "CDC-like kinase 2" [Mus musculus (taxid:10090)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 171/349 (48%), Positives = 239/349 (68%)

Query:    76 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKEL-VAIKIVRSINKYREA 134
             DD +GH ++ +G+ L  RY I+S +GEGTFG+VV+C D+ +    VA+KI++++ KY+EA
Sbjct:   144 DDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGTQVALKIIKNVEKYKEA 203

Query:   135 AMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
             A +EI+VL+++   D      CVQ+ +WFDY  H+CI FE LG S +DFL+ N+Y  +PI
Sbjct:   204 ARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPI 263

Query:   194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
               VR +  QL ++V F+H+ +L HTDLKPENIL V+++Y     Y  L +   + S    
Sbjct:   264 HQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELT--YN-LEKKRDERSV--- 317

Query:   254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               KS+A++++DFGS TF+H+ HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCI+ E   
Sbjct:   318 --KSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYV 375

Query:   314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
             G  LFQTH+N EHLAMMER+LGP+P  M IR  R+ +KYF RG RLDW +  ++   +R 
Sbjct:   376 GFTLFQTHDNREHLAMMERILGPVPSRM-IRKTRK-QKYFYRG-RLDWDENTSAGRYVRE 432

Query:   374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
               K LR   L  +  DH    L DL++ +L Y+PA+RL   EAL+HPFF
Sbjct:   433 NCKPLRR-YLTSEAEDHH--QLFDLIENMLEYEPAKRLTLGEALQHPFF 478

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO;IDA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISO;IDA

GO:0010212 "response to ionizing radiation" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IDA

GO:0032526 "response to retinoic acid" evidence=IDA

GO:0042221 "response to chemical stimulus" evidence=IDA

GO:0043484 "regulation of RNA splicing" evidence=ISO

GO:0045721 "negative regulation of gluconeogenesis" evidence=IMP

GO:0046777 "protein autophosphorylation" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51567	AFC2_ARATH	2, ., 7, ., 1, 2, ., 1	0.7139	0.9676	0.9812	no	no
P51566	AFC1_ARATH	2, ., 7, ., 1, 2, ., 1	0.8368	0.9792	0.9079	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.12.1	0.979
3rd Layer	2.7.12	0.983
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	433
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-71
PTZ00284	467	PTZ00284, PTZ00284, protein kinase; Provisional	7e-66
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-57
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-51
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	2e-51
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	7e-51
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-49
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	7e-48
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-44
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	2e-41
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-39
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	2e-39
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	6e-37
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-36
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	4e-36
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-33
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-33
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-33
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-32
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-32
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	3e-32
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	4e-32
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	7e-32
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	1e-31
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	3e-31
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	3e-31
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	2e-30
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	2e-30
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	9e-30
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-28
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	1e-28
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	2e-28
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	3e-28
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	5e-28
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	5e-28
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	9e-28
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	1e-27
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	2e-27
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	5e-27
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	1e-26
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	3e-26
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	4e-26
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	1e-25
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	2e-25
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-25
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	1e-24
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	1e-24
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	3e-24
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	3e-24
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	1e-23
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	2e-23
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	7e-23
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	7e-23
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	9e-23
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	2e-22
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	2e-22
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	3e-22
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	4e-22
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	4e-22
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	5e-22
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	6e-22
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	7e-22
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	1e-21
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	2e-21
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-21
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	5e-21
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-20
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	4e-20
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	2e-19
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	3e-19
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	5e-19
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	7e-19
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	7e-19
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	8e-19
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-18
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	4e-18
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-17
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	2e-17
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	5e-17
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	1e-16
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	2e-16
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	5e-16
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	6e-16
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	1e-15
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	1e-15
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	1e-15
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	1e-15
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	2e-15
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	2e-15
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	3e-15
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	3e-15
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	3e-15
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	7e-15
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	8e-15
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-14
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-14
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	2e-14
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	3e-14
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	7e-14
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	8e-14
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	1e-13
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	1e-13
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	1e-13
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-13
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	2e-13
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	2e-13
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	3e-13
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	3e-13
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-13
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	6e-13
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	9e-13
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-12
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	2e-12
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	2e-12
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-12
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	2e-12
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	3e-12
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	4e-12
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	4e-12
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	4e-12
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	6e-12
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	6e-12
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	6e-12
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	1e-11
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-11
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	1e-11
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-11
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	2e-11
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	2e-11
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	3e-11
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	3e-11
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	3e-11
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	4e-11
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	4e-11
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	5e-11
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	6e-11
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	7e-11
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	7e-11
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	9e-11
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	9e-11
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	1e-10
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	1e-10
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	1e-10
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	3e-10
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	3e-10
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	3e-10
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	4e-10
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	5e-10
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	6e-10
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	7e-10
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	1e-09
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	1e-09
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	1e-09
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	1e-09
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	3e-09
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	3e-09
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	4e-09
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	4e-09
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	4e-09
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	5e-09
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	7e-09
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	7e-09
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	8e-09
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	1e-08
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-08
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	1e-08
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	2e-08
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	2e-08
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-08
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	2e-08
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	2e-08
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	2e-08
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	2e-08
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	2e-08
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	2e-08
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	3e-08
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	3e-08
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	3e-08
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	3e-08
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	4e-08
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	4e-08
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	4e-08
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	5e-08
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	5e-08
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	5e-08
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	6e-08
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	6e-08
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	7e-08
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	1e-07
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	1e-07
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	2e-07
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	2e-07
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	2e-07
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	4e-07
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	4e-07
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	4e-07
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	4e-07
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	5e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	5e-07
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	6e-07
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	6e-07
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	9e-07
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	9e-07
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	1e-06
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	1e-06
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	2e-06
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	2e-06
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	2e-06
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	3e-06
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	3e-06
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	5e-06
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	5e-06
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	6e-06
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	6e-06
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	7e-06
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	8e-06
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	9e-06
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	1e-05
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	1e-05
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	1e-05
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	2e-05
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	2e-05
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	2e-05
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	2e-05
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	2e-05
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	3e-05
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	5e-05
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	6e-05
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	6e-05
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	8e-05
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	1e-04
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	1e-04
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	3e-04
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	3e-04
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	3e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	4e-04
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	4e-04
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	4e-04
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	4e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	5e-04
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	5e-04
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	7e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.001
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	0.001
PLN03225	566	PLN03225, PLN03225, Serine/threonine-protein kinas	0.001
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	0.001
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	0.001
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	0.002
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	0.003

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  225 bits (577), Expect = 1e-71
 Identities = 98/334 (29%), Positives = 146/334 (43%), Gaps = 85/334 (25%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHDIG 151
           Y IL K+GEG+FG+V    D +  +LVAIK+++   I K RE  + EI +L++L +H   
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKL-KHP-- 57

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               V++ + F+  + + +V E   G  L+D L+K        D  R   RQ+L ++ ++
Sbjct: 58  --NIVRLYDVFEDEDKLYLVMEYCEGGDLFDLLKKR--GRLSEDEARFYLRQILSALEYL 113

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H   ++H DLKPENILL                  +DG           +KL DFG    
Sbjct: 114 HSKGIVHRDLKPENILL-----------------DEDGH----------VKLADFGLARQ 146

Query: 271 EHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                     V T  Y APEV+LG G+    D+WS+G IL EL +G+  F   + L    
Sbjct: 147 LDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLL--E 204

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
           + +++  P P                       P+   S                     
Sbjct: 205 LFKKIGKPKPP-------------------FPPPEWDISP-------------------- 225

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                +  DL++ LL  DP +RL A EAL+HPFF
Sbjct: 226 -----EAKDLIRKLLVKDPEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional

 Score =  217 bits (554), Expect = 7e-66
 Identities = 128/358 (35%), Positives = 194/358 (54%), Gaps = 43/358 (12%)

Query: 78  KDGHYVFAIGENL---TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA 134
           ++GH+   +GE++   T R++ILS +GEGTFG+VVE +D ++KE  A+KIVR++ KY   
Sbjct: 112 EEGHFYVVLGEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRD 171

Query: 135 AMIEIDVLQRLARHDIGGT-RCVQIRNWF-DYRNHICIVFEKLGPSLYDFLRKNSYRSFP 192
           A IEI  ++++ + D       ++I+ +F +   H+CIV  K GP L D++ K+   S  
Sbjct: 172 AKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKYGPCLLDWIMKHGPFSH- 230

Query: 193 IDLVRELGRQLLESVA----FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
               R L + + ++      F  EL L+HTDLKPENIL+ +++            +  D 
Sbjct: 231 ----RHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSD------------TVVDP 274

Query: 249 SYFKNLPKSSA-IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCI 307
              + LP     +++ D G    E    + +VSTRHYR+PEV+LGLGW Y  D+WS+GCI
Sbjct: 275 VTNRALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCI 334

Query: 308 LVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIR-ADRRAEKYFRRGARLDW---PD 363
           + EL +G+ L+ TH+NLEHL +ME+ LG LP     R     A   +    +L     P 
Sbjct: 335 IYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPK 394

Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                   R V +++R               L DL+ GLL YD  +RL AR+   HP+
Sbjct: 395 HLARIARARPVREVIRDDL------------LCDLIYGLLHYDRQKRLNARQMTTHPY 440

Length = 467

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  188 bits (480), Expect = 4e-57
 Identities = 91/338 (26%), Positives = 144/338 (42%), Gaps = 87/338 (25%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSIN-KYREAAMIEIDVLQRLARHD- 149
           Y +L K+G G+FG V +       ++VA+KI+  RS   K  + A  EI +L+RL  H  
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRL-SHPN 59

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     V++ + F+ ++H+ +V E      L+D+L +        D  +++  Q+L  + 
Sbjct: 60  I-----VRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRG--GPLSEDEAKKIALQILRGLE 112

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-S 267
           ++H   +IH DLKPENILL                                +K+ DFG +
Sbjct: 113 YLHSNGIIHRDLKPENILLDENGV---------------------------VKIADFGLA 145

Query: 268 TTFEHQDHSY--VVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
                   S    V T  Y APEV+L G G+    D+WS+G IL EL +G+  F     L
Sbjct: 146 KKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENIL 205

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           + L ++ R+LGP                       D P  ++  +               
Sbjct: 206 DQLQLIRRILGPPLE-------------------FDEPKWSSGSE--------------- 231

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                    +  DL++  L  DP++R  A E L+HP+F
Sbjct: 232 ---------EAKDLIKKCLNKDPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score =  174 bits (443), Expect = 2e-51
 Identities = 103/340 (30%), Positives = 158/340 (46%), Gaps = 63/340 (18%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK---IVRSINKYREAAMIEIDVLQRLARHD 149
           RY+IL ++GEG  G V +  D E  E VA+K   + R        A+ EI  LQ      
Sbjct: 1   RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPY 60

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           +     V++ + F + +   +V E +   L + LR +  R  P   V+   R LL+ VA+
Sbjct: 61  V-----VKLLDVFPHGSGFVLVMEYMPSDLSEVLR-DEERPLPEAQVKSYMRMLLKGVAY 114

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           MH   ++H DLKP N+L+ +   +K+ D+  L+R   +                      
Sbjct: 115 MHANGIMHRDLKPANLLISADGVLKIADFG-LARLFSEE-----------------EPRL 156

Query: 270 FEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
           + HQ     V+TR YRAPE++ G   ++   DLW+VGCI  EL +G  LF    ++E LA
Sbjct: 157 YSHQ-----VATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLA 211

Query: 329 MMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN----L 383
           ++ R LG P                        WP   +  D     +  +  P      
Sbjct: 212 IVFRTLGTPNEE--------------------TWPGLTSLPD-----YNKITFPESKPIP 246

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
           + +    ++ + +DLL+GLL YDP++RL A EALRHP+FT
Sbjct: 247 LEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYFT 286

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score =  174 bits (443), Expect = 2e-51
 Identities = 95/337 (28%), Positives = 163/337 (48%), Gaps = 62/337 (18%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREA-AMIEIDVLQRLARHDIG 151
           Y+++ ++G+GTFG V    + E  ELVAIK + +    + E   + E+  L++L  H   
Sbjct: 1   YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHP-- 58

Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               V+++  F   + +  VFE +  +LY  ++    + F   ++R +  Q+L+ +A +H
Sbjct: 59  --NIVKLKEVFRENDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIH 116

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
           +    H DLKPEN+L+   E VK+ D+  L+R  +    +                T + 
Sbjct: 117 KHGFFHRDLKPENLLVSGPEVVKIADFG-LAREIRSRPPY----------------TDY- 158

Query: 272 HQDHSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
                  VSTR YRAPE++L     + P D+W++GCI+ EL +   LF     ++ L  +
Sbjct: 159 -------VSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKI 211

Query: 331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL-LRLPN----LIM 385
             VLG  P                   + DWP+G       +   KL  R P      + 
Sbjct: 212 CSVLGT-P------------------TKQDWPEG------YKLASKLGFRFPQFAPTSLH 246

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           Q + +++ + IDL++ +LR+DP +R  A +AL+HP+F
Sbjct: 247 QLIPNASPEAIDLIKDMLRWDPKKRPTASQALQHPYF 283

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score =  173 bits (440), Expect = 7e-51
 Identities = 99/339 (29%), Positives = 160/339 (47%), Gaps = 67/339 (19%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE----AAMIEIDVLQRLARHD 149
           Y  L K+GEGT+G V +  D +  E+VA+K +R ++   E     A+ EI +L+ L +H 
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIR-LDNEEEGIPSTALREISLLKEL-KHP 58

Query: 150 -IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
            I     V++ +       + +VFE     L  +L K        +L++ +  QLL  +A
Sbjct: 59  NI-----VKLLDVIHTERKLYLVFEYCDMDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLA 112

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-S 267
           + H  R++H DLKP+NIL+                 ++DG           +KL DFG +
Sbjct: 113 YCHSHRILHRDLKPQNILI-----------------NRDGV----------LKLADFGLA 145

Query: 268 TTFEHQDHSY--VVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
             F     +Y   V T  YRAPE++LG   ++   D+WSVGCI  E+ +G+ LF     +
Sbjct: 146 RAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEI 205

Query: 325 EHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           + L  + ++LG P                        WP G T     +  +     P  
Sbjct: 206 DQLFKIFQILGTPTEE--------------------SWP-GVTKLPDYKPTFP-KFPPKD 243

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           + + +     + IDLL  +L+Y+PA+R+ A+EAL+HP+F
Sbjct: 244 LEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score =  169 bits (429), Expect = 2e-49
 Identities = 99/335 (29%), Positives = 160/335 (47%), Gaps = 53/335 (15%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK---IVRSINKYREAAMIEIDVLQRLARHD 149
           +Y +L  +GEG +G V++C +    E+VAIK           ++ A+ E+ VL++L   +
Sbjct: 2   KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHEN 61

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     V ++  F  +  + +VFE +  +L + L  +     P D VR    QLL+++A+
Sbjct: 62  I-----VNLKEAFRRKGRLYLVFEYVERTLLELLEASPG-GLPPDAVRSYIWQLLQAIAY 115

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H   +IH D+KPENIL+  +  +K+ D+ F           + L    A  L D+    
Sbjct: 116 CHSHNIIHRDIKPENILVSESGVLKLCDFGFA----------RALRARPASPLTDY---- 161

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTHENLEHL 327
                    V+TR YRAPE+++G   NY  P D+W++GCI+ EL  GE LF    +++ L
Sbjct: 162 ---------VATRWYRAPELLVG-DTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQL 211

Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
            ++++ LGPLP              F   A  +        +S+       R P  +   
Sbjct: 212 YLIQKCLGPLPPSHQELFSS--NPRFAGVAFPEPSQ----PESL-----ERRYPGKV--- 257

Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
               +   +D L+  LR DP ERL   E L+HP+F
Sbjct: 258 ----SSPALDFLKACLRMDPKERLTCDELLQHPYF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score =  165 bits (419), Expect = 7e-48
 Identities = 100/339 (29%), Positives = 152/339 (44%), Gaps = 66/339 (19%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHDI 150
           Y+ L K+GEGT+G V +  D    E+VAIK ++   +     + A+ EI +L+ L   +I
Sbjct: 1   YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNI 60

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                +++ + F ++  + +VFE +   LY  ++    R  P  L++    QLL+ +AF 
Sbjct: 61  -----IKLLDVFRHKGDLYLVFEFMDTDLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFC 114

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H   ++H DLKPEN+L                           +     +KL DFG    
Sbjct: 115 HSHGILHRDLKPENLL---------------------------INTEGVLKLADFGLARS 147

Query: 271 EHQDHSYV---VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                      V TR YRAPE++LG  G++ P D+WSVGCI  EL S   LF     ++ 
Sbjct: 148 FGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQ 207

Query: 327 LAMMERVLG-PLPHHM-VIRADRRAEKY-FRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           L  + R LG P P       +  R  K+ F + A +  P                  PN 
Sbjct: 208 LFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLP---------------KLFPNA 252

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                   +   +DLL  +L YDP +R+ A +AL HP+F
Sbjct: 253 --------SPQALDLLSQMLHYDPHKRITAEQALAHPYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  154 bits (391), Expect = 1e-44
 Identities = 71/218 (32%), Positives = 105/218 (48%), Gaps = 39/218 (17%)

Query: 101 GEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           GEG FG V    D +  + VAIKI++    +   E  + EI++L++L  H       V++
Sbjct: 2   GEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKL-NHP----NIVKL 56

Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
              F+  NH+ +V E   G SL D L++N  +    D +  +  Q+LE + ++H   +IH
Sbjct: 57  YGVFEDENHLYLVMEYCEGGSLKDLLKENEGK-LSEDEILRILLQILEGLEYLHSNGIIH 115

Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            DLKPENILL S                              +KL DFG +     D S 
Sbjct: 116 RDLKPENILLDSDNGK--------------------------VKLADFGLSKLLTSDKSL 149

Query: 278 VVS---TRHYRAPEVILGLG-WNYPCDLWSVGCILVEL 311
           + +   T  Y APEV+LG G ++   D+WS+G IL EL
Sbjct: 150 LKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score =  148 bits (375), Expect = 2e-41
 Identities = 100/339 (29%), Positives = 156/339 (46%), Gaps = 67/339 (19%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI----EIDVLQRLARHD 149
           Y+IL K+GEGTF +V++    +  +  AIK       ++    +    EI  L+RL+ H 
Sbjct: 1   YKILGKIGEGTFSEVLKAQSRKTGKYYAIK--CMKKHFKSLEQVNNLREIQALRRLSPHP 58

Query: 150 --IGGTRCVQIRNWFDYR-NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             +     +     FD +   + +VFE +  +LY+ + K   R  P   V+    QLL+S
Sbjct: 59  NILRLIEVL-----FDRKTGRLALVFELMDMNLYELI-KGRKRPLPEKRVKSYMYQLLKS 112

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +  MH   + H D+KPENIL+                            K   +KL DFG
Sbjct: 113 LDHMHRNGIFHRDIKPENILI----------------------------KDDILKLADFG 144

Query: 267 S--TTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHEN 323
           S    +    ++  +STR YRAPE +L  G +    D+W+VGC+  E+ S   LF     
Sbjct: 145 SCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNE 204

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           L+ +A +  VLG  P       D    K FR+   ++  +  + + +   + KLL     
Sbjct: 205 LDQIAKIHDVLG-TP-------DAEVLKKFRKSRHMN-YNFPSKKGT--GLRKLL----- 248

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              +        +DLL+ LL YDP ER+ A++ALRHP+F
Sbjct: 249 --PNASAEG---LDLLKKLLAYDPDERITAKQALRHPYF 282

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score =  143 bits (363), Expect = 1e-39
 Identities = 96/359 (26%), Positives = 152/359 (42%), Gaps = 102/359 (28%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE---AAMIEIDVLQRLARHDI 150
           Y  ++++GEGT+GQV +  + +  ELVA+K +R  N+       A+ EI +LQ+L RH  
Sbjct: 1   YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKL-RHP- 58

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLY--------DF---LRKNSYRSFPIDLVREL 199
                V++           IV  K   S+Y        D    L     + F    ++  
Sbjct: 59  ---NIVRL---------KEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVK-FTESQIKCY 105

Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +QLLE + ++H   ++H D+K  NIL+                 + DG           
Sbjct: 106 MKQLLEGLQYLHSNGILHRDIKGSNILI-----------------NNDGV---------- 138

Query: 260 IKLIDFG---STTFEH-QDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSG 314
           +KL DFG     T  +  D++  V T  YR PE++LG   +    D+WSVGCIL EL  G
Sbjct: 139 LKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLG 198

Query: 315 EALFQTHENLEHLAMMERVLGP-----------LPHHMVIRADRRAEKYFRRGARLDWPD 363
           + +FQ    LE L  +  + G            LP    ++  +  ++            
Sbjct: 199 KPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRL---------- 248

Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
               R+  + +             +D SA   +DLL  LL  DP +R+ A +AL+H +F
Sbjct: 249 ----REFFKHL-------------IDPSA---LDLLDKLLTLDPKKRISADQALQHEYF 287

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score =  142 bits (361), Expect = 2e-39
 Identities = 99/343 (28%), Positives = 151/343 (44%), Gaps = 70/343 (20%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE---AAMI-EIDVLQRLARH- 148
           Y  L+++GEG +G V +  D      VA+K VR      E    + + EI +L++L    
Sbjct: 1   YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLS-EEGIPLSTLREIALLKQLESFE 59

Query: 149 --------DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
                   D+    C   R   D    + +VFE +   L  +L K      P + +++L 
Sbjct: 60  HPNIVRLLDV----CHGPRT--DRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLM 113

Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           RQLL  V F+H  R++H DLKP+NIL+ S   VK+ D+  L+R      Y   +  +S  
Sbjct: 114 RQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFG-LARI-----YSFEMALTS-- 165

Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                            VV T  YRAPEV+L   +  P D+WSVGCI  EL     LF+ 
Sbjct: 166 -----------------VVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRG 208

Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP-DGATSRDSMRAVWKLLR 379
               + L  +  V+G LP                  +  +WP + +  R S  +     R
Sbjct: 209 TSEADQLDKIFDVIG-LP------------------SEEEWPRNVSLPRSSFPS--YTPR 247

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                +  +        DLL+ +L ++P +R+ A EAL+HP+F
Sbjct: 248 SFKSFVPEICEEGL---DLLKKMLTFNPHKRISAFEALQHPYF 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score =  135 bits (343), Expect = 6e-37
 Identities = 98/344 (28%), Positives = 165/344 (47%), Gaps = 73/344 (21%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK---------IVRSINKYREAAMIEIDVLQ 143
           +Y  LSK+GEG++G V +C + E  ++VAIK         +++ I      A+ EI +L+
Sbjct: 2   KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKI------ALREIRMLK 55

Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
           +L   ++     V +   F  +  + +VFE    ++ + L KN  R  P  L++++  Q 
Sbjct: 56  QLKHPNL-----VNLIEVFRRKRKLHLVFEYCDHTVLNELEKNP-RGVPEHLIKKIIWQT 109

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L++V F H+   IH D+KPENIL+                            K   IKL 
Sbjct: 110 LQAVNFCHKHNCIHRDVKPENILIT---------------------------KQGQIKLC 142

Query: 264 DFG-STTFEHQDHSYV--VSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQ 319
           DFG +         Y   V+TR YRAPE+++G   +  P D+W++GC+  EL +G+ L+ 
Sbjct: 143 DFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWP 202

Query: 320 THENLEHLAMMERVLGPL-PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
              +++ L ++ + LG L P H  I       ++F +G  +  P    +R+ + +     
Sbjct: 203 GKSDVDQLYLIRKTLGDLIPRHQQI---FSTNQFF-KGLSIPEP---ETREPLES----- 250

Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           + PN+        +   +  L+G L+ DP ERL   E L HP+F
Sbjct: 251 KFPNI--------SSPALSFLKGCLQMDPTERLSCEELLEHPYF 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score =  135 bits (341), Expect = 2e-36
 Identities = 97/358 (27%), Positives = 149/358 (41%), Gaps = 87/358 (24%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA------AMIEIDVLQRLA 146
           RY    K+GEGT+  V +  D E   +VAIK ++   +          A+ EI +LQ L 
Sbjct: 1   RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQEL- 59

Query: 147 RHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           +H  I G   V     F ++++I +VFE +   L   ++  S    P D ++      L 
Sbjct: 60  KHPNIIGLLDV-----FGHKSNINLVFEFMETDLEKVIKDKSIVLTPAD-IKSYMLMTLR 113

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            + ++H   ++H DLKP N+L+ S   +K+ D+  L+RS                    F
Sbjct: 114 GLEYLHSNWILHRDLKPNNLLIASDGVLKLADFG-LARS--------------------F 152

Query: 266 GS--TTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHE 322
           GS      HQ     V TR YRAPE++ G   +    D+WSVGCI  EL           
Sbjct: 153 GSPNRKMTHQ-----VVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDS 207

Query: 323 NLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           +++ L  +   LG P                       +WP              +  LP
Sbjct: 208 DIDQLGKIFEALGTPTEE--------------------NWPG-------------VTSLP 234

Query: 382 N-LIMQHVDH--------SAG-DLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC 429
           + +  +            +A  D +DLLQ LL  +P +R+ AR+AL HP+F+ D    
Sbjct: 235 DYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEHPYFSNDPAPT 292

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score =  133 bits (337), Expect = 4e-36
 Identities = 93/336 (27%), Positives = 167/336 (49%), Gaps = 56/336 (16%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD 149
           ++ +L  +GEG +G V++C   E KE+VAIK  +      + +E  + E+ +L+ L + +
Sbjct: 2   KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQEN 61

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     V+++  F  R  + +VFE +  ++ + L +      P + VR    QL++++ +
Sbjct: 62  I-----VELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGVPP-EKVRSYIYQLIKAIHW 115

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H+  ++H D+KPEN+L+   + +K+ D+ F +R+  +GS                    
Sbjct: 116 CHKNDIVHRDIKPENLLISHNDVLKLCDFGF-ARNLSEGS-------------------- 154

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++  V+TR YR+PE++LG  +    D+WSVGCIL EL  G+ LF     ++ L  
Sbjct: 155 --NANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFT 212

Query: 330 MERVLGPLPHHMVIRADRRAEKYFRRGAR---LDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           +++VLGPLP   +        K F    R   L +P     +   R    +L        
Sbjct: 213 IQKVLGPLPAEQM--------KLFYSNPRFHGLRFPAVNHPQSLERRYLGIL-------- 256

Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                +G L+DL++ LL+ +P +R    + L HP F
Sbjct: 257 -----SGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score =  127 bits (320), Expect = 1e-33
 Identities = 99/338 (29%), Positives = 151/338 (44%), Gaps = 70/338 (20%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDIGGT 153
           + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I   
Sbjct: 5   VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI--- 61

Query: 154 RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
             V++ +     N + +VFE L   L  F+  +     P+ L++    QLL+ +AF H  
Sbjct: 62  --VKLLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH 119

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST----- 268
           R++H DLKP+N+L+                 + +G          AIKL DFG       
Sbjct: 120 RVLHRDLKPQNLLI-----------------NTEG----------AIKLADFGLARAFGV 152

Query: 269 ---TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENL 324
              T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     +
Sbjct: 153 PVRTYTHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI 207

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           + L  + R LG  P  +V         Y  + +   W      R     V     +P L 
Sbjct: 208 DQLFRIFRTLGT-PDEVVWPGVTSLPDY--KPSFPKWA-----RQDFSKV-----VPPL- 253

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                    D  DLL  +L YDP +R+ A+ AL HPFF
Sbjct: 254 -------DEDGRDLLSQMLHYDPNKRISAKAALAHPFF 284

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score =  128 bits (323), Expect = 1e-33
 Identities = 88/351 (25%), Positives = 144/351 (41%), Gaps = 80/351 (22%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--------YREAAMIEIDVLQR 144
           RY +L  +G G +G V    D      VAIK + ++           RE     I +L+ 
Sbjct: 1   RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILRE-----IKLLRH 55

Query: 145 LARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGR--- 201
           L   +I G   +      +  N + IV E +   L+  ++       P  L  +  +   
Sbjct: 56  LRHENIIGLLDILRPPSPEDFNDVYIVTELMETDLHKVIKS------PQPLTDDHIQYFL 109

Query: 202 -QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   +IH DLKP NIL+                         N   +  +
Sbjct: 110 YQILRGLKYLHSANVIHRDLKPSNILV-------------------------N--SNCDL 142

Query: 261 KLIDFG-----STTFEHQDH--SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELC 312
           K+ DFG         + +     YVV TR YRAPE++L    +    D+WSVGCI  EL 
Sbjct: 143 KICDFGLARGVDPDEDEKGFLTEYVV-TRWYRAPELLLSSSRYTKAIDIWSVGCIFAELL 201

Query: 313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
           + + LF   + ++ L ++  VLG                       L +     +R+ ++
Sbjct: 202 TRKPLFPGRDYIDQLNLIVEVLGTPSEED-----------------LKFITSEKARNYLK 244

Query: 373 AVWKLLRLP-NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           ++ K  + P + +       A   IDLL+ +L +DP +R+ A EAL HP+ 
Sbjct: 245 SLPKKPKKPLSKLFPGASPEA---IDLLEKMLVFDPKKRITADEALAHPYL 292

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score =  129 bits (323), Expect = 2e-33
 Identities = 89/348 (25%), Positives = 134/348 (38%), Gaps = 88/348 (25%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARHD 149
           YRIL K+GEG+FG+V    D +    VA+K++     S +K  E  + EI +L  L    
Sbjct: 2   YRILRKLGEGSFGEVYLARDRKL---VALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYR-SFPIDLVRELGRQLLESV 207
                 V++ ++F     + +V E + G SL D L+K   +          +  Q+L ++
Sbjct: 59  ----NIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSAL 114

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            ++H   +IH D+KPENILL                                +KLIDFG 
Sbjct: 115 EYLHSKGIIHRDIKPENILLD--------------------------RDGRVVKLIDFGL 148

Query: 267 --------STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPC---DLWSVGCILVELCSGE 315
                   ST+      S  V T  Y APEV+LGL   Y     D+WS+G  L EL +G 
Sbjct: 149 AKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGL 208

Query: 316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
             F+  +N    +   +++  LP   +                                 
Sbjct: 209 PPFEGEKNSSATSQTLKIILELPTPSL--------------------------------- 235

Query: 376 KLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                  L   + +  +    DLL+ LL  DP  RL +   L H    
Sbjct: 236 ----ASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLA 279

Length = 384

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score =  123 bits (310), Expect = 2e-32
 Identities = 79/332 (23%), Positives = 137/332 (41%), Gaps = 84/332 (25%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHDIGG 152
           + IL K+G+G FG+V +       + VAIK+++    + +E  + EI +L++    +I  
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNI-- 59

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V+    +  ++ + IV E   G SL D L K++ ++     +  + ++LL+ + ++H
Sbjct: 60  ---VKYYGSYLKKDELWIVMEFCSGGSLKDLL-KSTNQTLTESQIAYVCKELLKGLEYLH 115

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-STTF 270
              +IH D+K  NILL                 + DG           +KLIDFG S   
Sbjct: 116 SNGIIHRDIKAANILL-----------------TSDGE----------VKLIDFGLSAQL 148

Query: 271 EH-QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
              +  + +V T ++ APEVI G  ++Y  D+WS+G   +EL  G+  +   E     A+
Sbjct: 149 SDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPY--SELPPMKAL 206

Query: 330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD 389
            +      P                    L  P                       +  D
Sbjct: 207 FKIATNGPP-------------------GLRNP----------------------EKWSD 225

Query: 390 HSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                  D L+  L+ +P +R  A + L+HPF
Sbjct: 226 E----FKDFLKKCLQKNPEKRPTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score =  123 bits (310), Expect = 3e-32
 Identities = 80/334 (23%), Positives = 125/334 (37%), Gaps = 94/334 (28%)

Query: 101 GEGTFGQVVECFDNEKKELVAIK---IVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQ 157
           G G+FG V    D +  EL+A+K   +     +  EA   EI +L  L +H       V+
Sbjct: 9   GRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSL-QHP----NIVR 63

Query: 158 IR--NWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                  + +N + I  E + G SL   L+K  +   P  ++R+  RQ+LE +A++H   
Sbjct: 64  YYGSERDEEKNTLNIFLEYVSGGSLSSLLKK--FGKLPEPVIRKYTRQILEGLAYLHSNG 121

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG------ST 268
           ++H D+K  NIL+ S                              +KL DFG        
Sbjct: 122 IVHRDIKGANILVDS---------------------------DGVVKLADFGCAKRLGDI 154

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                  S V  T ++ APEVI G  +    D+WS+GC ++E+ +G+             
Sbjct: 155 ETGEGTGS-VRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKP------------ 201

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
                  P                                + M A++K+           
Sbjct: 202 -------PWSELG---------------------------NPMAALYKIGSSGEPPEIPE 227

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             S  +  D L+  LR DP +R  A E L+HPF 
Sbjct: 228 HLSE-EAKDFLRKCLRRDPKKRPTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score =  123 bits (311), Expect = 3e-32
 Identities = 102/340 (30%), Positives = 149/340 (43%), Gaps = 59/340 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR---EAAMIEIDVLQRLARHDI 150
           Y  L K+GEGT+G+V +  D    +LVA+K  R           A+ EI +LQ L+   I
Sbjct: 3   YEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLS-ESI 61

Query: 151 GGTRCVQIRNWFDYRNHICI--VFEKLGPSLYDFL---RKNSYRSFPIDLVRELGRQLLE 205
              R + + +  +      +  VFE L   L  F+    +   R  P   ++    QLL+
Sbjct: 62  YIVRLLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLK 121

Query: 206 SVAFMHELRLIHTDLKPENILL-VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
            VA  H+  ++H DLKP+N+L+      +K+ D   L R+                  I 
Sbjct: 122 GVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLG-LGRAFS----------------IP 164

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHEN 323
             S T E       + T  YRAPEV+LG   ++ P D+WSVGCI  E+   + LF     
Sbjct: 165 VKSYTHE-------IVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSE 217

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD-SMRAVWKLLRLPN 382
           L+ L  + ++LG  P   V                  WP  +  RD      WK   L  
Sbjct: 218 LQQLLHIFKLLGT-PTEQV------------------WPGVSKLRDWHEFPQWKPQDLSR 258

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
            +           +DLLQ +LRYDPA+R+ A+ AL HP+F
Sbjct: 259 AVPDLSPEG----LDLLQKMLRYDPAKRISAKAALTHPYF 294

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score =  124 bits (313), Expect = 4e-32
 Identities = 105/359 (29%), Positives = 164/359 (45%), Gaps = 79/359 (22%)

Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV-----------RSINKYREA 134
           I +++  +Y IL K+G+G +G V +  D   KE+VA+K +           R+   +RE 
Sbjct: 1   IDKHILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRT---FRE- 56

Query: 135 AMIEIDVLQRLARHD-IGGTRCVQIRNWFDYRNH--ICIVFEKLGPSLYDFLRKNSYRSF 191
               I  LQ L  H  I     V++ N     N   I +VFE +   L+  +R N     
Sbjct: 57  ----IMFLQELGDHPNI-----VKLLNVIKAENDKDIYLVFEYMETDLHAVIRAN----- 102

Query: 192 PIDLVRELGR-----QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK 246
              ++ ++ +     QLL+++ ++H   +IH DLKP NILL S   VK+ D+  L+RS  
Sbjct: 103 ---ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFG-LARS-- 156

Query: 247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGW-NYPCDLWSVG 305
                           +       E+   +  V+TR YRAPE++LG        D+WSVG
Sbjct: 157 ----------------LSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVG 200

Query: 306 CILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGA 365
           CIL E+  G+ LF     L  L  +  V+GP         D  +         +  P  A
Sbjct: 201 CILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPS-----AEDIES---------IKSPFAA 246

Query: 366 TSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           T  DS+       R    + + +  ++ D +DLL+ LL ++P +RL A EAL HP+  +
Sbjct: 247 TMLDSL-----PSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQ 300

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score =  122 bits (307), Expect = 7e-32
 Identities = 92/341 (26%), Positives = 154/341 (45%), Gaps = 70/341 (20%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHDIG 151
           ++ L K+GEGT+  V +  +    E+VA+K +   +       A+ EI +++ L   +I 
Sbjct: 2   FKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENI- 60

Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYR-SFPIDLVRELGRQLLESVAFM 210
               V++ +     N + +VFE +   L  ++  +  R +   + V+    QLL+ +AF 
Sbjct: 61  ----VRLHDVIHTENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFC 116

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG---- 266
           HE R++H DLKP+N+L+                 +K G           +KL DFG    
Sbjct: 117 HENRVLHRDLKPQNLLI-----------------NKRGE----------LKLADFGLARA 149

Query: 267 ----STTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
                 TF ++     V T  YRAP+V+LG   ++   D+WSVGCI+ E+ +G  LF   
Sbjct: 150 FGIPVNTFSNE-----VVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGT 204

Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
            N + L  + R++G  P         +  +Y     +  +P                  P
Sbjct: 205 NNEDQLLKIFRIMGT-PTESTWPGISQLPEY-----KPTFP---------------RYPP 243

Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             + Q   H+    IDLL  LL+ +P  R+ A +AL+HP+F
Sbjct: 244 QDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPWF 284

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score =  121 bits (306), Expect = 1e-31
 Identities = 99/346 (28%), Positives = 152/346 (43%), Gaps = 80/346 (23%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA----AMIEIDVLQRLARHD 149
           Y+ + K+GEGT+G V +  D    E+VA+K +R +    E     A+ EI +L+ L  H 
Sbjct: 1   YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIR-LETEDEGVPSTAIREISLLKEL-NHP 58

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
                 V++ +     N + +VFE L   L  ++  +        L++    QLL+ +A+
Sbjct: 59  ----NIVRLLDVVHSENKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAY 114

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST- 268
            H  R++H DLKP+N+L                           + +  A+KL DFG   
Sbjct: 115 CHSHRVLHRDLKPQNLL---------------------------IDREGALKLADFGLAR 147

Query: 269 -------TFEHQDHSYVVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQ 319
                  T+ H+     V T  YRAPE++LG    Y  P D+WS+GCI  E+ +   LF 
Sbjct: 148 AFGVPVRTYTHE-----VVTLWYRAPEILLG-SRQYSTPVDIWSIGCIFAEMVNRRPLFP 201

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV---WK 376
               ++ L  + R LG  P   V                  WP G TS    +     W 
Sbjct: 202 GDSEIDQLFRIFRTLGT-PDEDV------------------WP-GVTSLPDYKPTFPKWA 241

Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              L  ++    D      +DLL  +L YDPA+R+ A+ AL+HP+F
Sbjct: 242 RQDLSKVVPNL-DEDG---LDLLSKMLVYDPAKRISAKAALQHPYF 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score =  121 bits (305), Expect = 3e-31
 Identities = 95/346 (27%), Positives = 152/346 (43%), Gaps = 76/346 (21%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA----AMIEIDVLQRLARHD 149
           Y  L+++ EGT+G V    D +  E+VA+K ++ + K +E     ++ EI++L +L +H 
Sbjct: 7   YEKLNRIEEGTYGVVYRARDKKTGEIVALKKLK-MEKEKEGFPITSLREINILLKL-QHP 64

Query: 150 IGGTRCVQIRNWF--DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
                 V ++        + I +V E +   L   + +   + F    V+ L  QLL  V
Sbjct: 65  ----NIVTVKEVVVGSNLDKIYMVMEYVEHDLKSLM-ETMKQPFLQSEVKCLMLQLLSGV 119

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
           A +H+  ++H DLK  N+L                           L     +K+ DFG 
Sbjct: 120 AHLHDNWILHRDLKTSNLL---------------------------LNNRGILKICDFGL 152

Query: 267 STTFEHQDHSY--VVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHEN 323
           +  +      Y  +V T  YRAPE++LG   ++   D+WSVGCI  EL + + LF     
Sbjct: 153 AREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSE 212

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPD-----GATSRDSMRAVWKLL 378
           ++ L  + ++LG  P           EK         WP      GA  +   +  +  L
Sbjct: 213 IDQLNKIFKLLG-TP----------TEK--------IWPGFSELPGAKKKTFTKYPYNQL 253

Query: 379 R--LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           R   P L +           DLL  LL YDPA+R+ A +AL+HP+F
Sbjct: 254 RKKFPALSLSDNGF------DLLNRLLTYDPAKRISAEDALKHPYF 293

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score =  120 bits (304), Expect = 3e-31
 Identities = 101/343 (29%), Positives = 160/343 (46%), Gaps = 71/343 (20%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--IVRSINKY-REAAMIEIDVLQRLARHD 149
           +Y  L  +GEG++G V++C   E  ++VAIK  +    +K  ++ AM EI +L++L RH+
Sbjct: 2   KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQL-RHE 60

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
                 V +   F  +  + +VFE +  ++ D L K          VR+   Q+L  + F
Sbjct: 61  ----NLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYP-NGLDESRVRKYLFQILRGIEF 115

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-ST 268
            H   +IH D+KPENIL VS                          +S  +KL DFG + 
Sbjct: 116 CHSHNIIHRDIKPENIL-VS--------------------------QSGVVKLCDFGFAR 148

Query: 269 TFEHQDHSYV--VSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
           T       Y   V+TR YRAPE+++G   +    D+W+VGC++ E+ +GE LF    +++
Sbjct: 149 TLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDID 208

Query: 326 HLAMMERVLGPL-PHHMVIRADRRAEKYFRR-----GARLDWPDGATSRDSMRAVWKLLR 379
            L  + + LG L P H  I         F++     G RL  P+     + +       R
Sbjct: 209 QLYHIIKCLGNLIPRHQEI---------FQKNPLFAGMRL--PE-VKEIEPLEK-----R 251

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
            P L        +G ++DL +  LR DP +R  + + L H FF
Sbjct: 252 FPKL--------SGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score =  119 bits (301), Expect = 2e-30
 Identities = 91/366 (24%), Positives = 155/366 (42%), Gaps = 64/366 (17%)

Query: 85  AIGENLTPRYRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI------ 137
            +  +++ RY      +GEGT+G+V + +D    ++VAIK V+ I +             
Sbjct: 1   NMSFSISERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVK-IIEISNDVTKDRQLVG 59

Query: 138 ----------EIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK-- 185
                     E+ ++  +   +I G   V +   F     I +V + +     D L+K  
Sbjct: 60  MCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGDF-----INLVMDIMA---SD-LKKVV 110

Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
           +         V+ +  Q+L  +  +H+   +H DL P NI + S    K+ D+  L+R  
Sbjct: 111 DRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFG-LARRY 169

Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSV 304
               Y   L K   ++           ++ +  V T  YRAPE+++G   +++  D+WSV
Sbjct: 170 GYPPYSDTLSKDETMQR---------REEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSV 220

Query: 305 GCILVELCSGEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPD 363
           GCI  EL +G+ LF     ++ L  +  +LG P                       +WP 
Sbjct: 221 GCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNED--------------------NWPQ 260

Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
            A             R P  +     +++ D IDLLQ LL+ +P ER+ A+EAL+H +F 
Sbjct: 261 -AKKLPLYTEFTP--RKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKHEYFK 317

Query: 424 RDVRRC 429
            D   C
Sbjct: 318 SDPLPC 323

Length = 335

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score =  118 bits (298), Expect = 2e-30
 Identities = 96/342 (28%), Positives = 157/342 (45%), Gaps = 71/342 (20%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR---EAAMIEIDVLQRLARHDI 150
           Y  + K+GEGT+G V +  + +  ++VA+K +R  ++       A+ EI +L+ L   +I
Sbjct: 2   YTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNI 61

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSL---YDFLRKNSYRSFPIDLVRELGRQLLESV 207
                V +++     + + ++FE L   L    D L K  Y     +LV+    Q+L+ +
Sbjct: 62  -----VCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQY--MDAELVKSYLYQILQGI 114

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            F H  R++H DLKP+N+L+                                IKL DFG 
Sbjct: 115 LFCHSRRVLHRDLKPQNLLI---------------------------DNKGVIKLADFGL 147

Query: 267 --STTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHEN 323
             +     + +++ V T  YRAPEV+LG   ++ P D+WS+G I  E+ + + LF     
Sbjct: 148 ARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSE 207

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV---WKLLRL 380
           ++ L  + R+LG  P   V                  WP G TS    +     WK    
Sbjct: 208 IDQLFRIFRILGT-PTEDV------------------WP-GVTSLPDYKNTFPKWK---- 243

Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              +   V +   D +DLL+ +L YDPA+R+ A++AL HP+F
Sbjct: 244 KGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF 285

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score =  117 bits (294), Expect = 9e-30
 Identities = 93/335 (27%), Positives = 139/335 (41%), Gaps = 62/335 (18%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI----EIDVLQRLARHDIGG 152
           L+++GEGT+G V    D    E+VA+K VR ++  R+   I    EI +L  L   +I  
Sbjct: 12  LNRIGEGTYGIVYRARDTTSGEIVALKKVR-MDNERDGIPISSLREITLLLNLRHPNIVE 70

Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            + V +    D    I +V E     L   L  N    F    V+ L  QLL  + ++HE
Sbjct: 71  LKEVVVGKHLD---SIFLVMEYCEQDLASLL-DNMPTPFSESQVKCLMLQLLRGLQYLHE 126

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-STTFE 271
             +IH DLK  N+LL                                +K+ DFG + T+ 
Sbjct: 127 NFIIHRDLKVSNLLLTD---------------------------KGCLKIADFGLARTYG 159

Query: 272 HQDHSY--VVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                    V T  YRAPE++LG   +    D+W+VGCIL EL + + L      +E L 
Sbjct: 160 LPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLD 219

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP-NLIMQH 387
           ++ ++LG  P+  +                  WP    S   +   + L + P N +   
Sbjct: 220 LIIQLLGT-PNESI------------------WPG--FSDLPLVGKFTLPKQPYNNLKHK 258

Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
               +   + LL  LL YDP +R  A EAL   +F
Sbjct: 259 FPWLSEAGLRLLNFLLMYDPKKRATAEEALESSYF 293

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score =  112 bits (283), Expect = 1e-28
 Identities = 81/339 (23%), Positives = 143/339 (42%), Gaps = 90/339 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD 149
           +Y I+ ++G+G+FG+V         +L  +K +   N   K RE A+ E+ +L++L  H 
Sbjct: 1   KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKL-NHP 59

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFL--RKNSYRSFPIDLVRELGRQLLES 206
                 ++    F+ +  +CIV E   G  L   +  +K   + FP + + +   QL  +
Sbjct: 60  ----NIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLA 115

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H  +++H D+KP+NI L                 + +G           +KL DFG
Sbjct: 116 LKYLHSRKILHRDIKPQNIFL-----------------TSNGL----------VKLGDFG 148

Query: 267 -STTFEH-QDHSY-VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
            S       D +  VV T +Y +PE+     +NY  D+WS+GC+L ELC+ +  F+  EN
Sbjct: 149 ISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFE-GEN 207

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           L  LA+            +++                                   +P+ 
Sbjct: 208 LLELAL-----------KILKGQYPP------------------------------IPS- 225

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                   + +L +L+  LL+ DP ER    + L+ PF 
Sbjct: 226 ------QYSSELRNLVSSLLQKDPEERPSIAQILQSPFI 258

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  112 bits (283), Expect = 1e-28
 Identities = 81/334 (24%), Positives = 135/334 (40%), Gaps = 97/334 (29%)

Query: 101 GEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMI--EIDVLQRLARHDIGGTRCV 156
           G+G+FG+V+     +  +L A+K+++   I K +E      E ++L R+  H       V
Sbjct: 2   GKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRI-NHPF----IV 56

Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F     + +V E   G  L+  L K     F  +  R    +++ ++ ++H L +
Sbjct: 57  KLHYAFQTEEKLYLVLEYAPGGELFSHLSK--EGRFSEERARFYAAEIVLALEYLHSLGI 114

Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS----TTFE 271
           I+ DLKPENILL                   DG           IKL DFG     ++  
Sbjct: 115 IYRDLKPENILL-----------------DADGH----------IKLTDFGLAKELSSEG 147

Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMME 331
            + +++   T  Y APEV+LG G+    D WS+G +L E+ +G+  F   +  E   + E
Sbjct: 148 SRTNTF-CGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKE---IYE 203

Query: 332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS 391
           ++L                        L +P+  +                         
Sbjct: 204 KIL---------------------KDPLRFPEFLSP------------------------ 218

Query: 392 AGDLIDLLQGLLRYDPAERLKAREA---LRHPFF 422
             +  DL+ GLL+ DP +RL +  A     HPFF
Sbjct: 219 --EARDLISGLLQKDPTKRLGSGGAEEIKAHPFF 250

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score =  113 bits (286), Expect = 2e-28
 Identities = 94/339 (27%), Positives = 148/339 (43%), Gaps = 50/339 (14%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRL 145
            ++ PRY+ LS +GEG +G V           VAIK +       + +  + EI +L+R 
Sbjct: 1   FDVGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRF 60

Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
              +I G   +     F+  N + IV E +   LY  ++     +   D ++    Q+L 
Sbjct: 61  KHENIIGILDIIRPPSFESFNDVYIVQELMETDLYKLIKTQHLSN---DHIQYFLYQILR 117

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            + ++H   ++H DLKP N+LL +   +K+ D+  L+R               A    D 
Sbjct: 118 GLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFG-LAR--------------IADPEHDH 162

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENL 324
                E+      V+TR YRAPE++L   G+    D+WSVGCIL E+ S   LF   + L
Sbjct: 163 TGFLTEY------VATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYL 216

Query: 325 EHLAMMERVLGPLPHHMVIRA--DRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
             L ++  VLG  P    +      RA  Y +    L +             W  L  P 
Sbjct: 217 HQLNLILGVLGT-PSQEDLNCIISLRARNYIK---SLPFKPKVP--------WNKL-FP- 262

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
               + D  A   +DLL  +L ++P +R+   EAL HP+
Sbjct: 263 ----NADPKA---LDLLDKMLTFNPHKRITVEEALAHPY 294

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score =  113 bits (285), Expect = 3e-28
 Identities = 99/347 (28%), Positives = 161/347 (46%), Gaps = 71/347 (20%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY-REAAMI--EIDVLQRLARH- 148
           RY+I   +G+G++G V    D    E VAIK +  + ++  +A  I  EI +L RL RH 
Sbjct: 1   RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLL-RLLRHP 59

Query: 149 DIGGTRCVQIRNWF------DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGR- 201
           DI     V+I++        ++++ I +VFE +   L+  ++ N       DL  E  + 
Sbjct: 60  DI-----VEIKHIMLPPSRREFKD-IYVVFELMESDLHQVIKAND------DLTPEHHQF 107

Query: 202 ---QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              QLL ++ ++H   + H DLKP+NIL  +   +K+ D+  L+R +     F + P  +
Sbjct: 108 FLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFG-LARVA-----FNDTP--T 159

Query: 259 AIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEA 316
           AI   D+             V+TR YRAPE+       Y    D+WS+GCI  E+ +G+ 
Sbjct: 160 AIFWTDY-------------VATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP 206

Query: 317 LFQTHENLEHLAMMERVLGPLPHHMVIRA-DRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
           LF     +  L ++  +LG      + R  + +A +Y                 SMR   
Sbjct: 207 LFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYL---------------SSMRK-- 249

Query: 376 KLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              + P    Q   ++    + LL+ LL +DP +R  A EAL  P+F
Sbjct: 250 ---KQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYF 293

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score =  111 bits (281), Expect = 5e-28
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 21/233 (9%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYR--EAAMIEIDVLQRLARHD 149
           ++    +GEG+F  VV   + E  +  AIKI+  R + K +  +   IE +VL RL  H 
Sbjct: 3   FKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGH- 61

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 +++   F    ++  V E      L  ++RK  Y S      R    ++L ++ 
Sbjct: 62  ---PGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRK--YGSLDEKCTRFYAAEILLALE 116

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++H   +IH DLKPENILL    ++K+ D+   K L  +S   S   N   ++ I     
Sbjct: 117 YLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPES---NKGDATNIDSQIE 173

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            +        +  V T  Y +PE++         DLW++GCI+ ++ +G+  F
Sbjct: 174 KNRRR----FASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPF 222

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score =  112 bits (283), Expect = 5e-28
 Identities = 87/361 (24%), Positives = 148/361 (40%), Gaps = 67/361 (18%)

Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREA--AMIEIDVLQRLA 146
           +  RY+ +  +G G +G V    D    + VAIK I  + +    A   + E+ +L+   
Sbjct: 3   VGSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFK 62

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             +I   R +      D++  + +V + +   L+  +  +  +    + +R    QLL  
Sbjct: 63  HDNIIAIRDILRPPGADFK-DVYVVMDLMESDLHHIIHSD--QPLTEEHIRYFLYQLLRG 119

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLI 263
           + ++H   +IH DLKP N+L+     +++ D+   + LS S  +  YF            
Sbjct: 120 LKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMT---------- 169

Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHE 322
                  E+      V+TR YRAPE++L L  +    D+WSVGCI  E+     LF    
Sbjct: 170 -------EY------VATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKN 216

Query: 323 NLEHLAMMERVLGPLPHHMV--IRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKL 377
            +  L ++  VLG     ++  I +D R  KY     R   + W                
Sbjct: 217 YVHQLKLILSVLGSPSEEVLNRIGSD-RVRKYIQNLPRKQPVPWSKIFPKASP------- 268

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR-----DVRRCGFP 432
                           + +DLL  +L++DP ER+   +AL+HPF  +     D   C  P
Sbjct: 269 ----------------EALDLLSQMLQFDPEERITVEQALQHPFLAQYHDPDDEPTCPPP 312

Query: 433 L 433
            
Sbjct: 313 F 313

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score =  111 bits (280), Expect = 9e-28
 Identities = 87/354 (24%), Positives = 145/354 (40%), Gaps = 75/354 (21%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE----AAMIEIDVLQRLARH 148
            Y IL K+GEGTFG+V +    +   +VA+K +  ++  ++     A+ EI +L++L   
Sbjct: 9   DYEILGKLGEGTFGEVYKARQIKTGRVVALKKI-LMHNEKDGFPITALREIKILKKLKHP 67

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI---DLVRELG----- 200
           ++     V +         I +  E+  P      R + Y   P    DL   L      
Sbjct: 68  NV-----VPL---------IDMAVER--PDKSKRKRGSVYMVTPYMDHDLSGLLENPSVK 111

Query: 201 ----------RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
                      QLLE + ++HE  ++H D+K  NIL+ +   +K+ D+  L+R       
Sbjct: 112 LTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFG-LARPYDGPPP 170

Query: 251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNY--PCDLWSVGCIL 308
             N            G T      ++ +V TR YR PE++LG    Y    D+W +GC+ 
Sbjct: 171 --NPKGGGG------GGTR----KYTNLVVTRWYRPPELLLGER-RYTTAVDIWGIGCVF 217

Query: 309 VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR 368
            E+ +   + Q   +++ L ++ ++ G                         WP G  S 
Sbjct: 218 AEMFTRRPILQGKSDIDQLHLIFKLCGTPTEE-------------------TWP-GWRSL 257

Query: 369 DSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                V      P  + +       + +DLL  LL  DP +RL A +AL HP+F
Sbjct: 258 PGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPYF 311

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  110 bits (276), Expect = 1e-27
 Identities = 79/331 (23%), Positives = 131/331 (39%), Gaps = 83/331 (25%)

Query: 103 GTFGQVVECFDNEKKELVAIKIVRSINKYREA----AMIEIDVLQRLARHDIGGTRCVQI 158
           G +G+V         ++ AIK+++  +  R+      + E D+L +     +     V++
Sbjct: 4   GAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYV-----VKL 58

Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
              F  + ++ +V E L G  L   L   +  S   D+ R    +++ ++ ++H   +IH
Sbjct: 59  YYSFQGKKNLYLVMEYLPGGDLASLLE--NVGSLDEDVARIYIAEIVLALEYLHSNGIIH 116

Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            DLKP+NIL+ S  ++K+ D+      SK G   + +  +   K            +   
Sbjct: 117 RDLKPDNILIDSNGHLKLTDFGL----SKVGLVRRQINLNDDEK------------EDKR 160

Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
           +V T  Y APEVILG G +   D WS+GCIL E   G   F                   
Sbjct: 161 IVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFH------------------ 202

Query: 338 PHHMVIRADRRAEKYFR--RGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL 395
                       E+ F+     +++WP+     D                        + 
Sbjct: 203 --------GETPEEIFQNILNGKIEWPEDVEVSD------------------------EA 230

Query: 396 IDLLQGLLRYDPAERLKAR---EALRHPFFT 423
           IDL+  LL  DP +RL A+   E   HPFF 
Sbjct: 231 IDLISKLLVPDPEKRLGAKSIEEIKNHPFFK 261

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score =  110 bits (276), Expect = 2e-27
 Identities = 91/339 (26%), Positives = 140/339 (41%), Gaps = 60/339 (17%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE---AAMIEIDVLQRLARHD 149
           +Y  ++++G G +G V +  D      VA+K VR          + + E+ +L+RL   D
Sbjct: 1   QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFD 60

Query: 150 IGGTR-----CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
                     C   R   D    + +VFE +   L  +L K      P + +++L RQ L
Sbjct: 61  HPNIVRLMDVCATSRT--DRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFL 118

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + F+H   ++H DLKPENIL+ S   VK+ D+      ++  S               
Sbjct: 119 RGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGL----ARIYSC-------------- 160

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
                      + VV T  YRAPEV+L   +  P D+WSVGCI  E+   + LF  +   
Sbjct: 161 -------QMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEA 213

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP-DGATSRDSMRAVWKLLRLPNL 383
           + L  +  ++G LP                     DWP D    R +        R P  
Sbjct: 214 DQLGKIFDLIG-LP------------------PEDDWPRDVTLPRGAFSP-----RGPRP 249

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           +   V         LL  +L ++P +R+ A  AL+HPFF
Sbjct: 250 VQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQHPFF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score =  109 bits (275), Expect = 5e-27
 Identities = 96/359 (26%), Positives = 156/359 (43%), Gaps = 90/359 (25%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA----AMIEIDVLQRLARH 148
           +Y  L+K+G+GTFG+V +    + K++VA+K V   N+ +E     A+ EI +LQ L +H
Sbjct: 13  KYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENE-KEGFPITALREIKILQLL-KH 70

Query: 149 D-------IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGR 201
           +       I  T+         Y+    +VFE     L   L  N    F +  ++++ +
Sbjct: 71  ENVVNLIEICRTKATPYNR---YKGSFYLVFEFCEHDLAGLL-SNKNVKFTLSEIKKVMK 126

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
            LL  + ++H  +++H D+K  NIL+                 +KDG           +K
Sbjct: 127 MLLNGLYYIHRNKILHRDMKAANILI-----------------TKDG----------ILK 159

Query: 262 LIDFG-----STTFEHQDHSYV--VSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELC 312
           L DFG     S +   + + Y   V T  YR PE++LG   +Y  P D+W  GCI+ E+ 
Sbjct: 160 LADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLG-ERDYGPPIDMWGAGCIMAEMW 218

Query: 313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
           +   + Q +     L ++ ++ G +   +                   WP G    +   
Sbjct: 219 TRSPIMQGNTEQHQLTLISQLCGSITPEV-------------------WP-GVDKLE--- 255

Query: 373 AVWKLLRLPNLIMQHV---------DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
            ++K + LP    + V         D  A DLID    LL  DPA+R+ A  AL H FF
Sbjct: 256 -LFKKMELPQGQKRKVKERLKPYVKDPHALDLIDK---LLVLDPAKRIDADTALNHDFF 310

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score =  108 bits (272), Expect = 1e-26
 Identities = 96/362 (26%), Positives = 155/362 (42%), Gaps = 89/362 (24%)

Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA----AMIEIDVL 142
           G+    ++ I+ ++GEGT+GQV +  D +  ELVA+K VR  N+ +E     A+ EI +L
Sbjct: 2   GKRCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNE-KEGFPITAIREIKIL 60

Query: 143 QRLARHDIGGTRCVQI----RNWFDYRNH---ICIVFEKLGPSLYDFLRKNSYRSFPIDL 195
           ++L   +I      +I    ++  D++       +VFE +   L   L ++    F  D 
Sbjct: 61  RQLNHRNI--VNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLL-ESGLVHFSEDH 117

Query: 196 VRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLP 255
           ++   +QLLE + + H+   +H D+K  NILL                            
Sbjct: 118 IKSFMKQLLEGLNYCHKKNFLHRDIKCSNILL---------------------------N 150

Query: 256 KSSAIKLIDFGSTTFEHQDHS--YV--VSTRHYRAPEVILGLGWNYPC-DLWSVGCILVE 310
               IKL DFG     + + S  Y   V T  YR PE++LG     P  D+WS GCIL E
Sbjct: 151 NKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGE 210

Query: 311 LCSGEALFQTHENLEHLAMMERVLGP-----------LPHHMVIRADRRAEKYFRRGARL 359
           L + + +FQ ++ L  L ++ R+ G            LP+   +    + +K +RR  R 
Sbjct: 211 LFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTM----KPKKQYRRRLRE 266

Query: 360 DWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH 419
           ++                                  +DLL  +L  DP++R  A EAL  
Sbjct: 267 EF---------------------------SFIPTPALDLLDHMLTLDPSKRCTAEEALNS 299

Query: 420 PF 421
           P+
Sbjct: 300 PW 301

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score =  106 bits (267), Expect = 3e-26
 Identities = 95/348 (27%), Positives = 150/348 (43%), Gaps = 82/348 (23%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE----AAMIEIDVLQRLARH 148
           +Y  L K+GEGT+G V +  + E  E+VA+K VR ++   E    +A+ EI +L+ L   
Sbjct: 1   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVR-LDDDDEGVPSSALREICLLKELKHK 59

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK-NSYRSFPIDLVRELGRQLLESV 207
           +I     V++ +       + +VFE     L  +    N      I  V+    QLL+ +
Sbjct: 60  NI-----VRLYDVLHSDKKLTLVFEYCDQDLKKYFDSCNGDIDPEI--VKSFMFQLLKGL 112

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
           AF H   ++H DLKP+N+L+                 +K+G           +KL DFG 
Sbjct: 113 AFCHSHNVLHRDLKPQNLLI-----------------NKNGE----------LKLADFGL 145

Query: 267 --STTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEALFQTHE 322
             +     + +S  V T  YR P+V+ G   ++   D+WS GCI  EL  +G  LF  ++
Sbjct: 146 ARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND 205

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
             + L  + R+L                             G  + +S   V KL     
Sbjct: 206 VDDQLKRIFRLL-----------------------------GTPTEESWPGVSKLPDYKP 236

Query: 383 LIMQHVDHSAGDLI--------DLLQGLLRYDPAERLKAREALRHPFF 422
             M     S  +++        DLLQ LL  +P +R+ A EAL+HP+F
Sbjct: 237 YPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF 284

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score =  106 bits (267), Expect = 4e-26
 Identities = 93/350 (26%), Positives = 160/350 (45%), Gaps = 76/350 (21%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA----AMIEIDVLQRLARH 148
           +Y  + K+GEGT+G V +  D    E +A+K +R + +  E     A+ EI +L+ +   
Sbjct: 3   QYEKVEKIGEGTYGVVYKARDRVTNETIALKKIR-LEQEDEGVPSTAIREISLLKEMQHG 61

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           +I     V++++       + +VFE L   L   +  +   +    L++    Q+L  +A
Sbjct: 62  NI-----VRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIA 116

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           + H  R++H DLKP+N+L              + R             ++A+KL DFG  
Sbjct: 117 YCHSHRVLHRDLKPQNLL--------------IDRR------------TNALKLADFGLA 150

Query: 269 --------TFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQ 319
                   TF H+     V T  YRAPE++LG   ++ P D+WSVGCI  E+ + + LF 
Sbjct: 151 RAFGIPVRTFTHE-----VVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFP 205

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
               ++ L  + R+LG                         WP G TS    ++ +    
Sbjct: 206 GDSEIDELFKIFRILGTPNEET-------------------WP-GVTSLPDYKSAFPKWP 245

Query: 380 LPNL--IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR 427
             +L  ++  ++ +    +DLL  +LR DP++R+ AR AL H +F +D+ 
Sbjct: 246 PKDLATVVPTLEPAG---VDLLSKMLRLDPSKRITARAALEHEYF-KDLG 291

Length = 294

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score =  105 bits (264), Expect = 1e-25
 Identities = 81/348 (23%), Positives = 141/348 (40%), Gaps = 94/348 (27%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           Y+ L K+GEG  G+V +  D    + VAIK +R   + +E  + EI +++     +I   
Sbjct: 21  YKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNI--- 77

Query: 154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRE----LGRQLLESVA 208
             V   + +   + + +V E + G SL D + +N      + +       + R++L+ + 
Sbjct: 78  --VDYYDSYLVGDELWVVMEYMDGGSLTDIITQN-----FVRMNEPQIAYVCREVLQGLE 130

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H   +IH D+K +NILL                 SKDGS          +KL DFG  
Sbjct: 131 YLHSQNVIHRDIKSDNILL-----------------SKDGS----------VKLADFGFA 163

Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
              T E    + VV T ++ APEVI    +    D+WS+G + +E+  GE          
Sbjct: 164 AQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGE---------- 213

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS-MRAVWKLLRLPNLI 384
                       P ++                          R+  +RA++ +       
Sbjct: 214 ------------PPYL--------------------------REPPLRALFLITTKGIPP 235

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
           +++ +  + +  D L   L  DP +R  A E L+HPF  +   +  F 
Sbjct: 236 LKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKKACPKEEFA 283

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score =  104 bits (261), Expect = 2e-25
 Identities = 92/334 (27%), Positives = 149/334 (44%), Gaps = 57/334 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA----MIEIDVLQRLARHD 149
           Y  L K+GEGT+  V +      + LVA+K +R   ++ E A    + E+ +L+ L   +
Sbjct: 7   YVKLDKLGEGTYATVFKGRSKLTENLVALKEIRL--EHEEGAPCTAIREVSLLKNLKHAN 64

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     V + +       + +VFE L   L  +L  N      +  V+    QLL  +++
Sbjct: 65  I-----VTLHDIIHTERCLTLVFEYLDSDLKQYL-DNCGNLMSMHNVKIFMFQLLRGLSY 118

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H+ +++H DLKP+N+L+     +K+ D+  L+R+       K++P  +           
Sbjct: 119 CHKRKILHRDLKPQNLLINEKGELKLADFG-LARA-------KSVPTKT----------- 159

Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                +S  V T  YR P+V+LG   ++ P D+W VGCIL E+ +G  +F      E L 
Sbjct: 160 -----YSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELH 214

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
           ++ R+LG                         WP G TS +  R+          ++ H 
Sbjct: 215 LIFRLLGTPTEE-------------------TWP-GITSNEEFRSYLFPQYRAQPLINHA 254

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                D IDLL  LL Y+   R+ A  ALRH +F
Sbjct: 255 PRLDTDGIDLLSSLLLYETKSRISAEAALRHSYF 288

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score =  103 bits (258), Expect = 3e-25
 Identities = 70/230 (30%), Positives = 105/230 (45%), Gaps = 43/230 (18%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA---AMIEIDVLQRLARHD 149
            Y++   +G G FG V +  + E  + VAIK +       EA    M EID+L+ L   +
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     V+     +  + + I+ E     SL   ++K  +  FP  LV     Q+L+ +A
Sbjct: 61  I-----VKYIGSIETSDSLYIILEYAENGSLRQIIKK--FGPFPESLVAVYVYQVLQGLA 113

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++HE  +IH D+K  NIL                  +KDG           +KL DFG  
Sbjct: 114 YLHEQGVIHRDIKAANILT-----------------TKDGV----------VKLADFGVA 146

Query: 269 T----FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           T        D S VV T ++ APEVI   G +   D+WS+GC ++EL +G
Sbjct: 147 TKLNDVSKDDAS-VVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTG 195

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score =  103 bits (259), Expect = 1e-24
 Identities = 87/354 (24%), Positives = 154/354 (43%), Gaps = 68/354 (19%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLAR 147
           +L  RY  L  +G G+ G V    D++  + VA+K IV +  +  + A+ EI +++RL  
Sbjct: 2   DLGSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDH 61

Query: 148 HDI---------GGTRCVQ-IRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVR 197
            +I          G+   + + +  +  + + IV E +   L + L +        +  R
Sbjct: 62  DNIVKVYEVLGPSGSDLTEDVGSLTELNS-VYIVQEYMETDLANVLEQGP---LSEEHAR 117

Query: 198 ELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKS 257
               QLL  + ++H   ++H DLKP N+ + + + V                        
Sbjct: 118 LFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLV------------------------ 153

Query: 258 SAIKLIDFG-----STTFEHQDH-SYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVE 310
             +K+ DFG        + H+ + S  + T+ YR+P ++L    +    D+W+ GCI  E
Sbjct: 154 --LKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAE 211

Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           + +G+ LF     LE    M+ +L  +P   V+R + R E            DG   R  
Sbjct: 212 MLTGKPLFAGAHELE---QMQLILESVP---VVREEDRNE-LLNVIPSFVRNDGGEPRRP 264

Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           +R +     LP      V+  A   +D L+ +L ++P +RL A EAL HP+ + 
Sbjct: 265 LRDL-----LPG-----VNPEA---LDFLEQILTFNPMDRLTAEEALMHPYMSC 305

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score =  103 bits (258), Expect = 1e-24
 Identities = 89/348 (25%), Positives = 156/348 (44%), Gaps = 76/348 (21%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ L+ +G G +G V   +D   ++ VA+K        ++ +   YRE     + +L+ 
Sbjct: 16  RYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRE-----LRLLKH 70

Query: 145 LARHDIGG-----TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
           +   ++ G     T    I N+    N + +V   +G  L + ++    +    + V+ L
Sbjct: 71  MKHENVIGLLDVFTPATSIENF----NEVYLVTNLMGADLNNIVK---CQKLSDEHVQFL 123

Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             QLL  + ++H   +IH DLKP N+ +                            +   
Sbjct: 124 IYQLLRGLKYIHSAGIIHRDLKPSNVAV---------------------------NEDCE 156

Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF 318
           ++++DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL  G+ALF
Sbjct: 157 LRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALF 216

Query: 319 QTHENLEHLA-MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
             ++ ++ L  +ME V  P P  +   +   A KY +                      L
Sbjct: 217 PGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQ---------------------SL 255

Query: 378 LRLPNLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
             +P   ++ +   A  L IDLL+ +L  D  +R+ A EAL HP+F++
Sbjct: 256 PHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAHPYFSQ 303

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score =  100 bits (252), Expect = 3e-24
 Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 54/259 (20%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI----EIDVLQRLARH 148
           R++  +K+G GTFG+V    + +  EL+A+K +R I       +     E+ VL+ L   
Sbjct: 1   RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIR-IQDNDPKTIKEIADEMKVLELLKHP 59

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           ++     V++     +R  + I  E   G +L + L     R     ++R    QLLE +
Sbjct: 60  NLVKYYGVEV-----HREKVYIFMEYCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGL 112

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
           A++H   ++H D+KP NI L                             +  IKL DFG 
Sbjct: 113 AYLHSHGIVHRDIKPANIFLD---------------------------HNGVIKLGDFGC 145

Query: 268 -------TTFEHQDHSYVVSTRHYRAPEVILG---LGWNYPCDLWSVGCILVELCSG--- 314
                  TT   ++   +  T  Y APEVI G    G     D+WS+GC+++E+ +G   
Sbjct: 146 AVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRP 205

Query: 315 -EALFQTHENLEHLAMMER 332
              L    + + H+    +
Sbjct: 206 WSELDNEFQIMFHVGAGHK 224

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score =  102 bits (256), Expect = 3e-24
 Identities = 90/341 (26%), Positives = 143/341 (41%), Gaps = 67/341 (19%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINK--YREAAMIEIDVLQRLARHD 149
           RY  L ++G G +G V    D    E VAIK + R      + + A  E+ +L+ +   +
Sbjct: 16  RYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHEN 75

Query: 150 IGGTRCVQI-----RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
           + G   V         + D        F  + P +   L+K        D V+ L  Q+L
Sbjct: 76  VIGLLDVFTSAVSGDEFQD--------FYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQML 127

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + ++H   +IH DLKP N+ +                            +   +K++D
Sbjct: 128 CGLKYIHSAGIIHRDLKPGNLAV---------------------------NEDCELKILD 160

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
           FG       + +  V TR YRAPEVIL  + +N   D+WSVGCI+ E+ +G+ LF+  + 
Sbjct: 161 FGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY 220

Query: 324 LEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
           L+ L  + +V G P P  +    D+ A+ Y +                      L + P 
Sbjct: 221 LDQLTQILKVTGVPGPEFVQKLEDKAAKSYIK---------------------SLPKYPR 259

Query: 383 LIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFF 422
                +   A    +DLL+ +L  D  +RL A EAL HP+F
Sbjct: 260 KDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYF 300

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score =  100 bits (250), Expect = 1e-23
 Identities = 91/382 (23%), Positives = 143/382 (37%), Gaps = 118/382 (30%)

Query: 93  RYRILSKMGEGTFGQVVECF--DNEKKELVAIKIVRSINK---------YREAAMI-EID 140
           +Y I   +G GT+G+V +    + +  +  AIK  +   +          RE A++ E+ 
Sbjct: 1   KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELK 60

Query: 141 -----VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFL------RKNSYR 189
                 L  +        + V +   FDY  H             D        R+    
Sbjct: 61  HENVVSLVEVFLEH--ADKSVYLL--FDYAEH-------------DLWQIIKFHRQAKRV 103

Query: 190 SFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS 249
           S P  +V+ L  Q+L  V ++H   ++H DLKP NIL++                  +G 
Sbjct: 104 SIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMG-----------------EG- 145

Query: 250 YFKNLPKSSAIKLIDFGSTTFEHQ------DHSYVVSTRHYRAPEVILGLG-WNYPCDLW 302
                P+   +K+ D G     +       D   VV T  YRAPE++LG   +    D+W
Sbjct: 146 -----PERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIW 200

Query: 303 SVGCILVELCSGEALFQTHE------NLEHLAMMER---VLGP-----------LPHHMV 342
           ++GCI  EL + E +F+  E      N      +ER   VLG            +P +  
Sbjct: 201 AIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDT 260

Query: 343 IRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI--MQHVDHSAGDLIDLLQ 400
           +  D + + Y                             +L   M+          DLL+
Sbjct: 261 LMKDFKTKTY--------------------------PSNSLAKWMEKHKKPDSQGFDLLR 294

Query: 401 GLLRYDPAERLKAREALRHPFF 422
            LL YDP +R+ A EAL HP+F
Sbjct: 295 KLLEYDPTKRITAEEALEHPYF 316

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score =  100 bits (250), Expect = 2e-23
 Identities = 82/344 (23%), Positives = 151/344 (43%), Gaps = 68/344 (19%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE  ++      +
Sbjct: 18  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLL------K 71

Query: 145 LARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
             +H+  IG           +  N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 72  HMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 128

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+ +                            +   +K+
Sbjct: 129 ILRGLKYIHSADIIHRDLKPSNLAV---------------------------NEDCELKI 161

Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 162 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 221

Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G     ++ +    + + +                    +  L ++P
Sbjct: 222 DHIDQLKLILRLVGTPGAELLKKISSESARNY--------------------IQSLTQMP 261

Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 262 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 305

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 96.7 bits (241), Expect = 7e-23
 Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 46/258 (17%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSIN-KYREAAMIEIDVLQRLARHD 149
            +++L K+G+G++G V +       +  A+K V   S++ K RE A+ EI +L  +   +
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSY--RSFPIDLVRELGRQLLE 205
           I     +  +  F   N +CIV E    G  L   + K     +  P   +  +  QLL 
Sbjct: 61  I-----ISYKEAFLDGNKLCIVMEYAPFG-DLSKAISKRKKKRKLIPEQEIWRIFIQLLR 114

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            +  +HE +++H DLK  NILLV+ + VK+ D   +S+  K     KN+ K+        
Sbjct: 115 GLQALHEQKILHRDLKSANILLVANDLVKIGDLG-ISKVLK-----KNMAKT-------- 160

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                        + T HY APEV  G  ++Y  D+WS+GC+L E+ +    F+   +++
Sbjct: 161 ------------QIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEA-RSMQ 207

Query: 326 HLAMMERVLG----PLPH 339
            L    +V      P+P 
Sbjct: 208 DLRY--KVQRGKYPPIPP 223

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 98.5 bits (246), Expect = 7e-23
 Identities = 88/367 (23%), Positives = 144/367 (39%), Gaps = 118/367 (32%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +GQV   FD +    VAIK         + +   YRE          R
Sbjct: 16  RYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYREL---------R 66

Query: 145 LARHDIGGTRCVQIRNWFDYRNHIC------------------IVFEKLGPSLYDFLRKN 186
           L +H              D+ N I                   +V   +G  L + ++  
Sbjct: 67  LLKH-------------MDHENVIGLLDVFTPASSLEDFQDVYLVTHLMGADLNNIVKC- 112

Query: 187 SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK 246
             +    D ++ L  Q+L  + ++H   +IH DLKP NI                     
Sbjct: 113 --QKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNI--------------------- 149

Query: 247 DGSYFKNLPKSSAIKLIDFG---STTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLW 302
                  + +   +K++DFG    T  E   +   V+TR YRAPE++L  + +N   D+W
Sbjct: 150 ------AVNEDCELKILDFGLARHTDDEMTGY---VATRWYRAPEIMLNWMHYNQTVDIW 200

Query: 303 SVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP 362
           SVGCI+ EL +G+ LF   ++++ L  +  ++G     ++ +    + + + +       
Sbjct: 201 SVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQS------ 254

Query: 363 DGATSRDSMRAVWKLLRLPNLIMQHVD-------HSAGDLIDLLQGLLRYDPAERLKARE 415
                            LP   M   D        +    IDLL+ +L  DP +R+ A E
Sbjct: 255 -----------------LP--QMPKKDFKEVFSGANP-LAIDLLEKMLVLDPDKRITAAE 294

Query: 416 ALRHPFF 422
           AL HP+ 
Sbjct: 295 ALAHPYL 301

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 97.4 bits (242), Expect = 9e-23
 Identities = 87/341 (25%), Positives = 142/341 (41%), Gaps = 63/341 (18%)

Query: 93  RYRILSKMGEGTFGQVVECFD-NEKKELVAIKIVRSINKYRE----AAMIEIDVLQRLAR 147
           +Y  ++++GEG +G+V +  D       VA+K VR +    E    + + E+ VL+ L  
Sbjct: 2   QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVR-VQTGEEGMPLSTIREVAVLRHLET 60

Query: 148 HDIGGTR-----CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
            +          C   R   D    + +VFE +   L  +L K      P + ++++  Q
Sbjct: 61  FEHPNVVRLFDVCTVSRT--DRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQ 118

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           LL  + F+H  R++H DLKP+NIL+ S+  +K+ D+                      ++
Sbjct: 119 LLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGL-------------------ARI 159

Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
             F          + VV T  YRAPEV+L   +  P DLWSVGCI  E+   + LF+   
Sbjct: 160 YSFQMAL------TSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS 213

Query: 323 NLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           +++ L  +  V+G P                       DWP                 + 
Sbjct: 214 DVDQLGKILDVIGLPGEE--------------------DWPRDVALPRQAFHSKSAQPIE 253

Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +    +       DLL   L ++PA+R+ A  AL HP+F
Sbjct: 254 KFVTDIDELGK----DLLLKCLTFNPAKRISAYSALSHPYF 290

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 84/341 (24%), Positives = 137/341 (40%), Gaps = 65/341 (19%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAA-MIEIDVLQRLARH 148
            + ++  +G G FG+V    D +  ++ A+K++R    I + + A    E D+L      
Sbjct: 2   DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSP 61

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            I     V++   F    H+ +V E + G  L + L +     FP +  R    +L+ ++
Sbjct: 62  WI-----VKLYYSFQDEEHLYLVMEYMPGGDLMNLLIR--KDVFPEETARFYIAELVLAL 114

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR--SSKDGSYFKNLPKSSAIKLIDF 265
             +H+L  IH D+KP+NIL+ +  ++K+ D+    +   +KD  Y+ N   +   +    
Sbjct: 115 DSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVL 174

Query: 266 GSTTFEHQDHSY---VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
                  Q        V T  Y APEV+ G  +   CD WS+G IL E+  G   F    
Sbjct: 175 VRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFY--- 231

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
                                 +D   E Y +    ++W              + LR P 
Sbjct: 232 ----------------------SDTLQETYNK---IINWK-------------ESLRFP- 252

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLK-AREALRHPFF 422
                   S  + IDL+  LL  DP +RL    E   HPFF
Sbjct: 253 ---PDPPVSP-EAIDLICRLLC-DPEDRLGSFEEIKSHPFF 288

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 96.9 bits (241), Expect = 2e-22
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 58/337 (17%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINK--YREAAMIEIDVLQRLARHD 149
           RYR L ++G G +G V    D      VAIK + R      + + A  E+ +L+ + +H+
Sbjct: 16  RYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-KHE 74

Query: 150 --IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             IG           D  +   +V   +G  L   ++   +     D ++ L  Q+L+ +
Sbjct: 75  NVIGLLDVFTPDLSLDRFHDFYLVMPFMGTDLGKLMK---HEKLSEDRIQFLVYQMLKGL 131

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++H   +IH DLKP N L V+ +                            +K++DFG 
Sbjct: 132 KYIHAAGIIHRDLKPGN-LAVNED--------------------------CELKILDFGL 164

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                 + +  V TR YRAPEVIL  + +    D+WSVGCI+ E+ +G+ LF+ H++L+ 
Sbjct: 165 ARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQ 224

Query: 327 LAMMERVLGPLPHHMVIR-ADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
           L  + +V G      V +     A+ Y ++  R    D  +                 ++
Sbjct: 225 LMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRS-----------------LL 267

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
            + +  A   +++L+ +L  D   R+ A EAL HP+F
Sbjct: 268 PNANPLA---VNVLEKMLVLDAESRITAAEALAHPYF 301

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 97.1 bits (242), Expect = 3e-22
 Identities = 94/364 (25%), Positives = 144/364 (39%), Gaps = 75/364 (20%)

Query: 81  HYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSIN 129
            Y   +G++   +  RY+ L  +G G  G V   +D    + VAIK        +  +  
Sbjct: 2   FYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKR 61

Query: 130 KYREAAMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNS 187
            YRE       VL +L  H   IG       +   +    + +V E +  +L   ++   
Sbjct: 62  AYREL------VLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQ--- 112

Query: 188 YRSFPIDLVRE----LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR 243
                +DL  E    L  Q+L  +  +H   +IH DLKP NI++ S              
Sbjct: 113 -----MDLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKS-------------- 153

Query: 244 SSKDGSYFKNLPKSSAIKLIDFG-----STTFEHQDHSYVVSTRHYRAPEVILGLGWNYP 298
                           +K++DFG      T+F      YVV TR+YRAPEVILG+G+   
Sbjct: 154 -------------DCTLKILDFGLARTAGTSFMMTP--YVV-TRYYRAPEVILGMGYKEN 197

Query: 299 CDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFR-RGA 357
            D+WSVGCI+ E+  G  LF   ++++    +   LG      + R       Y   R  
Sbjct: 198 VDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPK 257

Query: 358 RLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREAL 417
              +       D +         P     H    A    DLL  +L  DP +R+   +AL
Sbjct: 258 YAGYSFEELFPDVL--------FPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDAL 309

Query: 418 RHPF 421
           +HP+
Sbjct: 310 QHPY 313

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 95.5 bits (238), Expect = 4e-22
 Identities = 90/343 (26%), Positives = 148/343 (43%), Gaps = 72/343 (20%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA---AMIEIDVLQRLAR--- 147
           Y+ L K+GEG++  V +       +LVA+K +R +     A   A+ E  +L+ L     
Sbjct: 7   YKKLDKLGEGSYATVYKGRSKLTGQLVALKEIR-LEHEEGAPFTAIREASLLKDLKHANI 65

Query: 148 ---HDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
              HDI  T           +  + +VFE L   L  ++         +  VR    QLL
Sbjct: 66  VTLHDIIHT-----------KKTLTLVFEYLDTDLKQYMDDCG-GGLSMHNVRLFLFQLL 113

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             +A+ H+ R++H DLKP+N+L+     +K+ D+  L+R+       K++P         
Sbjct: 114 RGLAYCHQRRVLHRDLKPQNLLISERGELKLADFG-LARA-------KSVP--------- 156

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
             S T+ ++     V T  YR P+V+LG   ++   D+W VGCI  E+ +G  LF    +
Sbjct: 157 --SKTYSNE-----VVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTD 209

Query: 324 -LEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
             + L  + RVLG P                        WP G +S    +        P
Sbjct: 210 VEDQLHKIFRVLGTPTEE--------------------TWP-GVSSNPEFKPYSFPFYPP 248

Query: 382 NLIMQHVDH--SAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             ++ H           +L    L+Y+P +R+ A EA++HP+F
Sbjct: 249 RPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKHPYF 291

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 96.3 bits (240), Expect = 4e-22
 Identities = 87/339 (25%), Positives = 152/339 (44%), Gaps = 51/339 (15%)

Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREA--AMIEIDVLQRLA 146
           +  +Y  +  +G G +G V    ++E  E VAIK I  + +   +A   + EI +L+ L 
Sbjct: 3   VDTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLD 62

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             ++   + +      +  N + IV+E +   L+  +R +  ++   D  +    QLL  
Sbjct: 63  HENVIAIKDIMPPPHREAFNDVYIVYELMDTDLHQIIRSS--QTLSDDHCQYFLYQLLRG 120

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H   ++H DLKP N+LL +   +K+ D+  L+R++ +   F               
Sbjct: 121 LKYIHSANVLHRDLKPSNLLLNANCDLKICDFG-LARTTSEKGDFMT------------- 166

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                     YVV TR YRAPE++L    +    D+WSVGCI  EL   + LF   + + 
Sbjct: 167 ---------EYVV-TRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVH 216

Query: 326 HLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
            L ++  +LG P    +    + +A +Y R           T R S   ++         
Sbjct: 217 QLKLITELLGSPSEEDLGFIRNEKARRYIRSLPY-------TPRQSFARLFP-------- 261

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                H+    IDLL+ +L +DP++R+   EAL HP+  
Sbjct: 262 -----HANPLAIDLLEKMLVFDPSKRITVEEALAHPYLA 295

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 96.0 bits (239), Expect = 5e-22
 Identities = 88/340 (25%), Positives = 145/340 (42%), Gaps = 65/340 (19%)

Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-----EIDVLQR 144
           +T RY  L  +G G FG V    D    + VAIK  + +  +    +      E+ +L+ 
Sbjct: 8   ITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIK--KIMKPFSTPVLAKRTYRELKLLKH 65

Query: 145 LARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
           L   +I     + I    D    I  V E LG  L+  L     R      ++    Q+L
Sbjct: 66  LRHENIISLSDIFISPLED----IYFVTELLGTDLHRLLTS---RPLEKQFIQYFLYQIL 118

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + ++H   ++H DLKP NIL+                            ++  +K+ D
Sbjct: 119 RGLKYVHSAGVVHRDLKPSNILI---------------------------NENCDLKICD 151

Query: 265 FG-STTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHE 322
           FG +   + Q   YV STR+YRAPE++L    ++   D+WS GCI  E+  G+ LF   +
Sbjct: 152 FGLARIQDPQMTGYV-STRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKD 210

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL-LRLP 381
           ++   +++  +LG  P  ++                        S +++R V  L  R P
Sbjct: 211 HVNQFSIITDLLGTPPDDVINTI--------------------CSENTLRFVQSLPKREP 250

Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
               +   ++    IDLL+ +L +DP +R+ A EAL HP+
Sbjct: 251 VPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPY 290

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 97.0 bits (241), Expect = 6e-22
 Identities = 91/345 (26%), Positives = 153/345 (44%), Gaps = 74/345 (21%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR------ 147
           Y++ + +G G+FG V E    +  E VAIK V    +Y+     E+ +++ L        
Sbjct: 68  YKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNR---ELLIMKNLNHINIIFL 124

Query: 148 HDIGGTRCVQI--RNWFDYRNHICIVFEKLGPSLYDFLRKNSY--RSFPIDLVRELGRQL 203
            D   T C +   +N F     + +V E +  +++ +++  +    + P+ LV+    QL
Sbjct: 125 KDYYYTECFKKNEKNIF-----LNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQL 179

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
             ++A++H   + H DLKP+N+L+                           P +  +KL 
Sbjct: 180 CRALAYIHSKFICHRDLKPQNLLID--------------------------PNTHTLKLC 213

Query: 264 DFGSTT---FEHQDHSYVVSTRHYRAPEVILGLGWNYPC--DLWSVGCILVELCSGEALF 318
           DFGS        +  SY+ S R YRAPE++LG   NY    DLWS+GCI+ E+  G  +F
Sbjct: 214 DFGSAKNLLAGQRSVSYICS-RFYRAPELMLG-ATNYTTHIDLWSLGCIIAEMILGYPIF 271

Query: 319 QTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
               +++ L  + +VLG P    +       A+  F        PD    +D ++ V+  
Sbjct: 272 SGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKF--------PD-VKPKD-LKKVFP- 320

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                        +  D I+ +   L+Y+P +RL   EAL  PFF
Sbjct: 321 -----------KGTPDDAINFISQFLKYEPLKRLNPIEALADPFF 354

Length = 440

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 93.8 bits (234), Expect = 7e-22
 Identities = 79/332 (23%), Positives = 130/332 (39%), Gaps = 88/332 (26%)

Query: 101 GEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRCV 156
           G G FG+V       K    A+K V  R I +  +   I  E ++L+    H       V
Sbjct: 2   GVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILE-ECNHPF----IV 56

Query: 157 QIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F  + +I ++ E  LG  L+  LR      F     R     ++ +  ++H   +
Sbjct: 57  KLYRTFKDKKYIYMLMEYCLGGELWTILRDRG--LFDEYTARFYIACVVLAFEYLHNRGI 114

Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+LL S  YVK+ D+ F                    K +  G  T+     
Sbjct: 115 IYRDLKPENLLLDSNGYVKLVDFGF-------------------AKKLKSGQKTWT---- 151

Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLG 335
                T  Y APE+IL  G+++  D WS+G +L EL +G   F   ++ + + +   +L 
Sbjct: 152 --FCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGE-DDEDPMEIYNDIL- 207

Query: 336 PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL 395
                             +   +L++P                        ++D +A DL
Sbjct: 208 ------------------KGNGKLEFP-----------------------NYIDKAAKDL 226

Query: 396 IDLLQGLLRYDPAERL-----KAREALRHPFF 422
           I     LLR +P ERL       ++  +H +F
Sbjct: 227 IK---QLLRRNPEERLGNLKGGIKDIKKHKWF 255

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 94.3 bits (234), Expect = 1e-21
 Identities = 85/334 (25%), Positives = 146/334 (43%), Gaps = 57/334 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA----MIEIDVLQRLARHD 149
           Y  L K+GEGT+  V +        LVA+K +R   ++ E A    + E+ +L+ L   +
Sbjct: 8   YIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRL--EHEEGAPCTAIREVSLLKDLKHAN 65

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     V + +       + +VFE L   L  +L  +   S  +  V+    QLL  + +
Sbjct: 66  I-----VTLHDIIHTEKSLTLVFEYLDKDLKQYL-DDCGNSINMHNVKLFLFQLLRGLNY 119

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H  +++H DLKP+N+L+     +K+ D+  L+R+       K++P  +           
Sbjct: 120 CHRRKVLHRDLKPQNLLINERGELKLADFG-LARA-------KSIPTKT----------- 160

Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                +S  V T  YR P+++LG   ++   D+W VGCI  E+ +G  LF      E L 
Sbjct: 161 -----YSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLH 215

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + R+LG                         WP G  S +  ++        + +  H 
Sbjct: 216 FIFRILGTPTEET-------------------WP-GILSNEEFKSYNYPKYRADCLHNHA 255

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                D  +LL  LL+++  +R+ A EA++HP+F
Sbjct: 256 PRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYF 289

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 93.1 bits (232), Expect = 2e-21
 Identities = 77/345 (22%), Positives = 127/345 (36%), Gaps = 103/345 (29%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQR----LARH 148
            + +L  +G+G+FG+V +  D    ++VAIK++       E A  EI+ +Q+    L+  
Sbjct: 2   LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVID-----LEEAEDEIEDIQQEIQFLS-- 54

Query: 149 DIGGTRCVQIRNWF-----DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                R   I  ++       +  + I+ E   G S  D L+           +  + R+
Sbjct: 55  ---QCRSPYITKYYGSFLKGSK--LWIIMEYCGGGSCLDLLK---PGKLDETYIAFILRE 106

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++HE   IH D+K  NILL                 S++G           +KL
Sbjct: 107 VLLGLEYLHEEGKIHRDIKAANILL-----------------SEEGD----------VKL 139

Query: 263 IDFGST---TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
            DFG +   T      +  V T  + APEVI   G++   D+WS+G   +EL  GE    
Sbjct: 140 ADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEP--- 196

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
                           PL                                 MR ++ + +
Sbjct: 197 ----------------PLSDL----------------------------HPMRVLFLIPK 212

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                ++    S     D +   L  DP ER  A+E L+H F  +
Sbjct: 213 NNPPSLEGNKFSK-PFKDFVSLCLNKDPKERPSAKELLKHKFIKK 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 93.0 bits (232), Expect = 2e-21
 Identities = 75/336 (22%), Positives = 128/336 (38%), Gaps = 90/336 (26%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKI--VRSINKYREAAMIEIDVLQRLARHDIGG 152
             +  +G+G+ G V +       ++ A+K   V    ++R+  + E+  L+      +  
Sbjct: 4   ERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYV-- 61

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V+    F     I IV E + G SL D L+K      P  ++  + RQ+L+ + ++H
Sbjct: 62  ---VKCYGAFYKEGEISIVLEYMDGGSLADLLKK--VGKIPEPVLAYIARQILKGLDYLH 116

Query: 212 -ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-STT 269
            +  +IH D+KP N+L+                 +  G           +K+ DFG S  
Sbjct: 117 TKRHIIHRDIKPSNLLI-----------------NSKGE----------VKIADFGISKV 149

Query: 270 FEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
            E+   Q +++V  T  Y +PE I G  ++Y  D+WS+G  L+E   G+  F        
Sbjct: 150 LENTLDQCNTFV-GTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSF 208

Query: 327 LAMMERVL-GPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
             +M+ +  GP P                       P    S                  
Sbjct: 209 FELMQAICDGPPP---------------------SLPAEEFSP----------------- 230

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                   +  D +   L+ DP +R  A E L+HPF
Sbjct: 231 --------EFRDFISACLQKDPKKRPSAAELLQHPF 258

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 91.8 bits (228), Expect = 5e-21
 Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 35/219 (15%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV------RSINKYREAAMIEIDVLQRLARHDIGGT 153
           +G+G FG+V  C+D +    +A+K V          K   A   EI +L+ L +H+    
Sbjct: 10  LGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNL-QHE---- 64

Query: 154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
           R VQ          + I  E + G S+ D L+  +Y +    + R+  RQ+LE V ++H 
Sbjct: 65  RIVQYYGCLRDDETLSIFMEYMPGGSVKDQLK--AYGALTETVTRKYTRQILEGVEYLHS 122

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
             ++H D+K  NIL  SA  VK+ D+     +SK         +   I      S T   
Sbjct: 123 NMIVHRDIKGANILRDSAGNVKLGDFG----ASK---------RLQTICS----SGTGM- 164

Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                V  T ++ +PEVI G G+    D+WSVGC +VE+
Sbjct: 165 ---KSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEM 200

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 89.8 bits (223), Expect = 2e-20
 Identities = 79/332 (23%), Positives = 126/332 (37%), Gaps = 92/332 (27%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI------EIDVLQRLARHDIGGT 153
           +G G+FG V E  + +  +  A+K V   +  +           EI +L +L   +I   
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNI--- 64

Query: 154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
             VQ        +++ I  E + G SL   L+K  Y SFP  ++R   RQ+L  + ++H+
Sbjct: 65  --VQYLGTEREEDNLYIFLELVPGGSLAKLLKK--YGSFPEPVIRLYTRQILLGLEYLHD 120

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST--TF 270
              +H D+K  NIL+                   +G           +KL DFG      
Sbjct: 121 RNTVHRDIKGANILV-----------------DTNG----------VVKLADFGMAKQVV 153

Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
           E         + ++ APEVI   G +    D+WS+GC ++E+ +G+  +     LE +A 
Sbjct: 154 EFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWS---QLEGVAA 210

Query: 330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD 389
           +                      F+ G   + P                     I  H+ 
Sbjct: 211 V----------------------FKIGRSKELP--------------------PIPDHLS 228

Query: 390 HSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
             A D I      L+ DP+ R  A E L HPF
Sbjct: 229 DEAKDFILK---CLQRDPSLRPTAAELLEHPF 257

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 90.1 bits (223), Expect = 4e-20
 Identities = 85/334 (25%), Positives = 148/334 (44%), Gaps = 57/334 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA----MIEIDVLQRLARHD 149
           Y  L K+GEGT+  V +      + LVA+K +R   ++ E A    + E+ +L+ L   +
Sbjct: 8   YIKLEKLGEGTYATVFKGRSKLTENLVALKEIRL--EHEEGAPCTAIREVSLLKDLKHAN 65

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     V + +       + +VFE L   L  ++  +      +  V+    Q+L  +A+
Sbjct: 66  I-----VTLHDIVHTDKSLTLVFEYLDKDLKQYM-DDCGNIMSMHNVKIFLYQILRGLAY 119

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H  +++H DLKP+N+L+     +K+ D+  L+R+       K++P  +           
Sbjct: 120 CHRRKVLHRDLKPQNLLINERGELKLADFG-LARA-------KSVPTKT----------- 160

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                +S  V T  YR P+V+LG   ++   D+W VGCI  E+ SG  LF      + L 
Sbjct: 161 -----YSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELH 215

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
           ++ R+LG                         WP G +S D  +        P  ++ H 
Sbjct: 216 LIFRLLGT-------------------PTEETWP-GISSNDEFKNYNFPKYKPQPLINHA 255

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                + I+LL   L+Y+  +R+ A EA++H +F
Sbjct: 256 PRLDTEGIELLTKFLQYESKKRISAEEAMKHAYF 289

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 88.1 bits (218), Expect = 2e-19
 Identities = 88/337 (26%), Positives = 144/337 (42%), Gaps = 60/337 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE---AAMIEIDVLQRLARHDI 150
           Y  L K+GEG++  V +       +LVA+K++ S+         A+ E  +L+ L   +I
Sbjct: 7   YLNLEKLGEGSYATVYKGISRINGQLVALKVI-SMKTEEGVPFTAIREASLLKGLKHANI 65

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V + +    +  +  VFE +   L  ++ ++     P + VR    QLL  +A++
Sbjct: 66  -----VLLHDIIHTKETLTFVFEYMHTDLAQYMIQHPGGLHPYN-VRLFMFQLLRGLAYI 119

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG---S 267
           H   ++H DLKP+N+L+                     SY   L      KL DFG   +
Sbjct: 120 HGQHILHRDLKPQNLLI---------------------SYLGEL------KLADFGLARA 152

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQ-THENLE 325
            +   Q +S  V T  YR P+V+LG   ++   D+W  GCI +E+  G+  F    +  E
Sbjct: 153 KSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFE 212

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            L  +  VLG +P         +   Y     + +W      +  +R VWK L  P    
Sbjct: 213 QLEKIWTVLG-VPTEDTWPGVSKLPNY-----KPEWFLPCKPQ-QLRVVWKRLSRPP--- 262

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                      DL   +L   P +R+ A++AL HP+F
Sbjct: 263 --------KAEDLASQMLMMFPKDRISAQDALLHPYF 291

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 88.6 bits (220), Expect = 3e-19
 Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 50/233 (21%)

Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
           D V+    Q+L  + ++H   ++H D+KP N+L+ S                        
Sbjct: 103 DHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNS------------------------ 138

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYV----VSTRHYRAPEVILGLG-WNYPCDLWSVGCIL 308
              +  +K+ DFG    E  D S      V T++YRAPE+++G   +    D+WSVGCI 
Sbjct: 139 ---NCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIF 195

Query: 309 VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR 368
            EL     LFQ    ++ L ++  +LG      +  A   A  +  RG     P    S 
Sbjct: 196 AELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRG-----PHKPPSL 250

Query: 369 DSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
             +            +     H A   + LL  +L +DP +R+ A +AL HP+
Sbjct: 251 PVLY----------TLSSQATHEA---VHLLCRMLVFDPDKRISAADALAHPY 290

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 85.8 bits (213), Expect = 5e-19
 Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 46/230 (20%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + IL K+GEG++G V +    E  ++VAIK+V  + +  +  + EI +L++         
Sbjct: 5   FDILEKLGEGSYGSVYKAIHKETGQVVAIKVV-PVEEDLQEIIKEISILKQ--------C 55

Query: 154 RCVQIRNWFD---YRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
               I  ++        + IV E    G S+ D ++  + ++   + +  +  Q L+ + 
Sbjct: 56  DSPYIVKYYGSYFKNTDLWIVMEYCGAG-SVSDIMKITN-KTLTEEEIAAILYQTLKGLE 113

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-S 267
           ++H  + IH D+K  NILL                 +++G            KL DFG S
Sbjct: 114 YLHSNKKIHRDIKAGNILL-----------------NEEG----------QAKLADFGVS 146

Query: 268 TTFEH--QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
                     + V+ T  + APEVI  +G+N   D+WS+G   +E+  G+
Sbjct: 147 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGK 196

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 86.3 bits (213), Expect = 7e-19
 Identities = 90/341 (26%), Positives = 153/341 (44%), Gaps = 66/341 (19%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE--AAMIEIDVLQRLARHDIG 151
           Y  L K+GEG++  V +       +LVA+K++R   +      A+ E  +L+ L   +I 
Sbjct: 7   YEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANI- 65

Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               V + +    +  + +VFE +   L  ++ K+     P + V+    QLL  ++++H
Sbjct: 66  ----VLLHDIIHTKETLTLVFEYVHTDLCQYMDKHPGGLHP-ENVKLFLFQLLRGLSYIH 120

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
           +  ++H DLKP+N+L+     +K+ D+  L+R+       K++P           S T+ 
Sbjct: 121 QRYILHRDLKPQNLLISDTGELKLADFG-LARA-------KSVP-----------SHTYS 161

Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPC-DLWSVGCILVELCSGEALFQTHENLE-HLAM 329
           ++     V T  YR P+V+LG      C D+W VGCI VE+  G A F   ++++  L  
Sbjct: 162 NE-----VVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLER 216

Query: 330 MERVLG-------PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
           +  VLG       P  H +      R   Y              S  ++R  W  L    
Sbjct: 217 IFLVLGTPNEDTWPGVHSLPHFKPERFTLY--------------SPKNLRQAWNKL---- 258

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
               +V+H+     DL   LL+  P  RL A+ AL H +F+
Sbjct: 259 ---SYVNHAE----DLASKLLQCFPKNRLSAQAALSHEYFS 292

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 87.0 bits (215), Expect = 7e-19
 Identities = 99/363 (27%), Positives = 154/363 (42%), Gaps = 60/363 (16%)

Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 3   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 62

Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ VL +   H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 63  NQTHAKRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQM 121

Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 122 ----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA 176

Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P                     YVV TR+YRAPEVILG+G+    D+WSVG
Sbjct: 177 --GTSFMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDIWSVG 212

Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGAR 358
           CI+ E+  G  LF   ++++    ++E++  P P  M      V        KY      
Sbjct: 213 CIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFE 272

Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 273 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 317

Query: 419 HPF 421
           HP+
Sbjct: 318 HPY 320

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 87.0 bits (215), Expect = 8e-19
 Identities = 68/229 (29%), Positives = 99/229 (43%), Gaps = 47/229 (20%)

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++                
Sbjct: 131 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA---------------- 173

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
                 T F      YVV TR+YRAPEVILG+G+    D+WSVGCI+ EL  G  +FQ  
Sbjct: 174 -----CTNFMMT--PYVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT 225

Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD-------WPDGATSRDSMRAV 374
           ++++    +   LG      + R       Y     +         +PD     +S R  
Sbjct: 226 DHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDK 285

Query: 375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
            K                    DLL  +L  DP +R+   EALRHP+ T
Sbjct: 286 LK---------------TSQARDLLSKMLVIDPDKRISVDEALRHPYIT 319

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 84.0 bits (208), Expect = 2e-18
 Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 40/227 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARHD 149
           ++I  K+G+G F  V +        +VA+K V+       K R+  + EID+L++L   +
Sbjct: 4   FKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPN 63

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLR-----KNSYRSFPIDLVRELGRQLL 204
           +     ++    F   N + IV E L  +  D  R     K   R  P   + +   QL 
Sbjct: 64  V-----IKYLASFIENNELNIVLE-LADA-GDLSRMIKHFKKQKRLIPERTIWKYFVQLC 116

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
            ++  MH  R++H D+KP N+ + +   VK+ D          G +F     SS      
Sbjct: 117 SALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGL-------GRFF-----SS------ 158

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
              TT  H     +V T +Y +PE I   G+N+  D+WS+GC+L E+
Sbjct: 159 --KTTAAHS----LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 90/356 (25%), Positives = 152/356 (42%), Gaps = 83/356 (23%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKK--ELVAIK-IVRSINKYREA--AMIEIDVLQRLAR 147
           RY ++ ++G+G +G V    + E    E VAIK I    +K   A  A+ E+ +L+    
Sbjct: 1   RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRG 60

Query: 148 HD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNS------YRSFPIDLVRELG 200
           H  I     + I  +    N + +  E +   L+  +R         ++SF         
Sbjct: 61  HKNITCLYDMDIV-FPGNFNELYLYEELMEADLHQIIRSGQPLTDAHFQSFIY------- 112

Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+L+ +   +K+ D+  L+R       F   P  +A 
Sbjct: 113 -QILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFG-LARG------FSENPGENAG 164

Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPC----DLWSVGCILVELCSGEA 316
            + ++             V+TR YRAPE++L            D+WSVGCIL EL   + 
Sbjct: 165 FMTEY-------------VATRWYRAPEIMLS---FQSYTKAIDVWSVGCILAELLGRKP 208

Query: 317 LFQTHENLEHLAMMERVLGPLPHHMVIR-ADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
           +F+  + ++ L  + +VLG      + R    +A+ Y R                     
Sbjct: 209 VFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIR--------------------- 247

Query: 376 KLLRLPNL-------IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
               LPN+       I  + +  A   +DLL+ LL +DP +R+   EAL HP+   
Sbjct: 248 ---SLPNIPKKPFESIFPNANPLA---LDLLEKLLAFDPTKRISVEEALEHPYLAI 297

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 83/347 (23%), Positives = 130/347 (37%), Gaps = 90/347 (25%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA--MIEIDVLQRL 145
            N    + I+ ++G+G FG+V +    E     A KI++ I    E    M+EID+L   
Sbjct: 1   VNPNDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQ-IESEEELEDFMVEIDILSEC 59

Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
            +H       V +   + Y N + I+ E       D +     R      +R + RQ+LE
Sbjct: 60  -KHP----NIVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLE 114

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++ F+H  ++IH DLK  NILL                   DG           +KL DF
Sbjct: 115 ALNFLHSHKVIHRDLKAGNILLTL-----------------DGD----------VKLADF 147

Query: 266 GST---TFEHQDHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGEAL 317
           G +       Q     + T ++ APEV+         ++Y  D+WS+G  L+EL   E  
Sbjct: 148 GVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEP- 206

Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
                               PHH +                          + MR + K+
Sbjct: 207 --------------------PHHEL--------------------------NPMRVLLKI 220

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           L+     +      +    D L+  L  DP +R  A E L+HPF + 
Sbjct: 221 LKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSD 267

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 83.2 bits (205), Expect = 2e-17
 Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 47/227 (20%)

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P      
Sbjct: 127 QMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP------ 177

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
                          YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF   
Sbjct: 178 ---------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR 221

Query: 322 ENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
           + ++    ++E++  P P  M      V        KY        +PD     DS    
Sbjct: 222 DYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS---- 277

Query: 375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                      +H    A    DLL  +L  DPA+R+   EAL+HP+
Sbjct: 278 -----------EHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPY 313

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 86/346 (24%), Positives = 133/346 (38%), Gaps = 101/346 (29%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKI-----VRSINKYREAAMIEIDVLQRLARH 148
           ++IL+++G+G +GQV      +  E+VA+K      +  +N+ R   + E D+L    + 
Sbjct: 3   FQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHV-LTERDILTT-TKS 60

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           +      V++   F    ++ +  E + G      L  N+      D  R    ++ E+V
Sbjct: 61  EW----LVKLLYAFQDDEYLYLAMEYVPGGDFRTLL--NNLGVLSEDHARFYMAEMFEAV 114

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
             +HEL  IH DLKPEN L+                    G           IKL DFG 
Sbjct: 115 DALHELGYIHRDLKPENFLI-----------------DASGH----------IKLTDFGL 147

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE-LC-----SGEALFQT 320
           S       +S VV +  Y APEV+ G G+++  D WS+GC+L E LC     SG    +T
Sbjct: 148 SKGIVTYANS-VVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNET 206

Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV-WKLLR 379
            ENL++                                L  P     R ++    W L+ 
Sbjct: 207 WENLKYWKET----------------------------LQRPVYDDPRFNLSDEAWDLIT 238

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR-HPFFTR 424
              LI                     DP+ R  + E ++ HPFF  
Sbjct: 239 --KLIN--------------------DPSRRFGSLEDIKNHPFFKE 262

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 79.1 bits (195), Expect = 1e-16
 Identities = 70/269 (26%), Positives = 119/269 (44%), Gaps = 43/269 (15%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVR-----SINKYREAAMI-----EIDVLQRLARHD 149
           +G G+FG V    +    EL+A+K V      + +K R+ +M+     EI +L+ L   +
Sbjct: 8   IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     VQ        +H+ I  E + G S+   L  N+Y +F   LVR   RQ+L+ + 
Sbjct: 68  I-----VQYLGSSLDADHLNIFLEYVPGGSVAALL--NNYGAFEETLVRNFVRQILKGLN 120

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++H   +IH D+K  NIL+ +   +K+ D+   K L  +S         P          
Sbjct: 121 YLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPS--------L 172

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
             + F             + APEV+    +    D+WS+GC++VE+ +G+  F     L+
Sbjct: 173 QGSVF-------------WMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQ 219

Query: 326 HLAMM-ERVLGPLPHHMVIRADRRAEKYF 353
            +  + E     +P ++   A    EK F
Sbjct: 220 AIFKIGENASPEIPSNISSEAIDFLEKTF 248

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 78.1 bits (192), Expect = 2e-16
 Identities = 74/275 (26%), Positives = 125/275 (45%), Gaps = 43/275 (15%)

Query: 93  RYRILSKMGEGTFGQ---VVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD 149
           +Y +L  +GEG+FG+   V     ++K  +  I++ +S +   E +  E  +L ++   +
Sbjct: 1   QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAV-EDSRKEAVLLAKMKHPN 59

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     V  +  F+   H+ IV E   G  L   ++    + FP D + +   Q+   V 
Sbjct: 60  I-----VAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQ 114

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +HE R++H D+K +NI              FL+++ K             +KL DFGS 
Sbjct: 115 HIHEKRVLHRDIKSKNI--------------FLTQNGK-------------VKLGDFGSA 147

Query: 269 TFEHQDHSYV---VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH--EN 323
                  +Y    V T +Y  PE+   + +N   D+WS+GCIL ELC+ +  FQ +  +N
Sbjct: 148 RLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKN 207

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGAR 358
           L  L + +    PLP H         ++ F+R  R
Sbjct: 208 LI-LKVCQGSYKPLPSHYSYELRSLIKQMFKRNPR 241

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 77.1 bits (190), Expect = 5e-16
 Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 33/224 (14%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV---RSINKYREAAMIEIDVLQRLARHD 149
            Y  +  +G+G FG+       E   LV  K V   R   K R  A+ EI +L  L   +
Sbjct: 1   HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPN 60

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     +   N F   N + I  E   G +LYD + +   + F  ++V     Q++ +V+
Sbjct: 61  I-----IAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVS 115

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H+  ++H D+K  NI L  A  +K+ D+     S   GS +               + 
Sbjct: 116 YIHKAGILHRDIKTLNIFLTKAGLIKLGDFGI---SKILGSEYS-------------MAE 159

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC 312
           T        VV T +Y +PE+  G+ +N+  D+W++GC+L EL 
Sbjct: 160 T--------VVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELL 195

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 77.4 bits (190), Expect = 6e-16
 Identities = 77/341 (22%), Positives = 134/341 (39%), Gaps = 88/341 (25%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-EAAMIEIDVLQRLARHDIGG 152
           + I+ ++G+G FG+V +  + E   L A K++ + ++   E  M+EID+L      +I  
Sbjct: 7   WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNI-- 64

Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
              V++ + F Y N++ I+ E       D +     R      +R + +Q LE++ ++HE
Sbjct: 65  ---VKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHE 121

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG---STT 269
            ++IH DLK  NIL                  + DG           IKL DFG     T
Sbjct: 122 NKIIHRDLKAGNILF-----------------TLDGD----------IKLADFGVSAKNT 154

Query: 270 FEHQDHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
              Q     + T ++ APEV++        ++Y  D+WS+G  L+E+   E         
Sbjct: 155 RTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEP-------- 206

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
                        PHH +                          + MR + K+ +     
Sbjct: 207 -------------PHHEL--------------------------NPMRVLLKIAKSEPPT 227

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
           +      + +  D L+  L  +   R    + L+HPF T +
Sbjct: 228 LAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVTVN 268

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 75/337 (22%), Positives = 134/337 (39%), Gaps = 89/337 (26%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSI-------NKYREAAMIEIDVLQRLARHDI-- 150
           +G G F    +  D +   L+A+K V  +        +  EA   EI ++ RL    I  
Sbjct: 8   LGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIR 67

Query: 151 --GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             G T            +H  +  E + G S+   L K  Y +F   ++     QLL  +
Sbjct: 68  MLGATC---------EDSHFNLFVEWMAGGSVSHLLSK--YGAFKEAVIINYTEQLLRGL 116

Query: 208 AFMHELRLIHTDLKPENILLVS-AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++HE ++IH D+K  N+L+ S  + +++ D+                   +A +L   G
Sbjct: 117 SYLHENQIIHRDVKGANLLIDSTGQRLRIADF------------------GAAARLAAKG 158

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
           +   E Q    ++ T  + APEV+ G  +   CD+WSVGC+++E+ + +  +   ++  H
Sbjct: 159 TGAGEFQGQ--LLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNH 216

Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           LA++                      F+  +    P                 +P     
Sbjct: 217 LALI----------------------FKIASATTAPS----------------IP----- 233

Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
             +H +  L D+    L   P +R  +RE L+HP F 
Sbjct: 234 --EHLSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR 268

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 76.1 bits (187), Expect = 1e-15
 Identities = 70/266 (26%), Positives = 111/266 (41%), Gaps = 63/266 (23%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREA--AMIEIDVLQRLA 146
           RY +  ++G+G+FG V    D +      +K+++ I        E   A  E  +L +L 
Sbjct: 1   RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLD 60

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLR--KNSYRSFPIDLVRELGRQL 203
              I     V+    F  R+  CI+ E   G  L   L   K++ ++   + V E   QL
Sbjct: 61  HPAI-----VKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQL 115

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L  V +MH+ R++H DLK +NI L                            K++ +K+ 
Sbjct: 116 LLGVHYMHQRRILHRDLKAKNIFL----------------------------KNNLLKIG 147

Query: 264 DFG-----------STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC 312
           DFG           +TTF          T +Y +PE +   G++   D+WS+GCIL E+C
Sbjct: 148 DFGVSRLLMGSCDLATTF--------TGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMC 199

Query: 313 SGEALFQTHENLEHLAMMERVLGPLP 338
                F+    L    ++  V GP P
Sbjct: 200 CLAHAFEGQNFLS--VVLRIVEGPTP 223

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 76.0 bits (187), Expect = 1e-15
 Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 43/236 (18%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK---IVRSINKYREAAMIEIDVLQRLARHD 149
           +Y  + K+GEG+FG+ +     E  +   IK   I +   K RE +  E+ VL  +   +
Sbjct: 1   KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPN 60

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     VQ +  F+   ++ IV +   G  LY  +       FP D + +   Q+  ++ 
Sbjct: 61  I-----VQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALK 115

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
            +H+ +++H D+K +NI L                 +KDG           IKL DFG  
Sbjct: 116 HVHDRKILHRDIKSQNIFL-----------------TKDG----------TIKLGDFGIA 148

Query: 267 ---STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
              ++T E       + T +Y +PE+     +N   D+W++GC+L E+C+ +  F+
Sbjct: 149 RVLNSTVELA--RTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFE 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 76.7 bits (189), Expect = 1e-15
 Identities = 74/268 (27%), Positives = 111/268 (41%), Gaps = 66/268 (24%)

Query: 162 FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK 221
           F+ + H+C+V E +       L KN   + P+D+ R    + + ++ ++H   ++H DLK
Sbjct: 70  FETKRHLCMVMEYVEGGDCATLLKN-IGALPVDMARMYFAETVLALEYLHNYGIVHRDLK 128

Query: 222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVST 281
           P+N+L+ S  ++K+ D+      SK G    +L  +     I+    T E  D   V  T
Sbjct: 129 PDNLLITSMGHIKLTDFGL----SKIG--LMSLTTNLYEGHIE--KDTREFLDKQ-VCGT 179

Query: 282 RHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHM 341
             Y APEVIL  G+  P D W++G IL E   G   F                G  P  +
Sbjct: 180 PEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPF---------------FGDTPEEL 224

Query: 342 ---VIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL 398
              VI  D            ++WP+G  +            LP            D  DL
Sbjct: 225 FGQVISDD------------IEWPEGDEA------------LPA-----------DAQDL 249

Query: 399 LQGLLRYDPAERL---KAREALRHPFFT 423
           +  LLR +P ERL    A E  +H FF 
Sbjct: 250 ISRLLRQNPLERLGTGGAFEVKQHRFFL 277

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 76.8 bits (189), Expect = 2e-15
 Identities = 79/335 (23%), Positives = 127/335 (37%), Gaps = 95/335 (28%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAA--MIEIDVLQRLARHDIGGTRC 155
           +G+GTFG+V+   +    +  A+KI++   I    E A  + E  VLQ   RH       
Sbjct: 3   LGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQN-TRHPF----L 57

Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
             ++  F   + +C V E   G  L+  L +   R F  D  R  G +++ ++ ++H   
Sbjct: 58  TALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHSCD 115

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +++ DLK EN++L    ++K+ D+       K+G              I  G+T      
Sbjct: 116 VVYRDLKLENLMLDKDGHIKITDFGL----CKEG--------------ISDGATM----- 152

Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLEHLAMMER 332
                 T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L  L +ME 
Sbjct: 153 -KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEE 211

Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
                                                        +R P  +        
Sbjct: 212 ---------------------------------------------IRFPRTLSP------ 220

Query: 393 GDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
            +   LL GLL+ DP +RL      A+E + H FF
Sbjct: 221 -EAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFF 254

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 75.7 bits (186), Expect = 2e-15
 Identities = 67/256 (26%), Positives = 109/256 (42%), Gaps = 40/256 (15%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV---RSINKYREAAMIEIDVLQRLARHD 149
           +Y  +  +G G FG V  C     ++LV IK +   +     R AA  E  VL+ L+  +
Sbjct: 1   KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN 60

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     ++    F     + IV E   G +L ++++K        D +     Q+L ++ 
Sbjct: 61  I-----IEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALH 115

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-S 267
            +H   ++H DLK +NILL   + V                          +K+ DFG S
Sbjct: 116 HVHTKLILHRDLKTQNILLDKHKMV--------------------------VKIGDFGIS 149

Query: 268 TTFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                +  +Y VV T  Y +PE+  G  +N   D+W++GC+L EL S +  F+   NL  
Sbjct: 150 KILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEA-ANLPA 208

Query: 327 LAM--MERVLGPLPHH 340
           L +  M     P+   
Sbjct: 209 LVLKIMSGTFAPISDR 224

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 42/245 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDI 150
           Y +L  +G+G+FG V +       +++  K +   N   K ++  + E+++L+ L   +I
Sbjct: 2   YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNI 61

Query: 151 GGTRCVQIRNWF-DYRNH-ICIVFEKL-GPSLYDFLRK--NSYRSFPIDLVRELGRQLLE 205
                V+  +   D  N  + IV E   G  L   ++K     +    + +  +  QLL 
Sbjct: 62  -----VRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLL 116

Query: 206 SVAFMHEL-----RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           ++   H        ++H DLKP NI L +   VK+ D+  L++     S F         
Sbjct: 117 ALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFG-LAKILGHDSSF--------- 166

Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 + T+        V T +Y +PE +  + ++   D+WS+GC++ ELC+    F  
Sbjct: 167 ------AKTY--------VGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTA 212

Query: 321 HENLE 325
              L+
Sbjct: 213 RNQLQ 217

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 75.1 bits (184), Expect = 3e-15
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 37/227 (16%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR------SINKYREAAMIEIDVLQRLAR 147
           +R+   +G+G FG+V  C+D +    +A+K V+        +K   A   EI +L+ L  
Sbjct: 4   WRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLH 63

Query: 148 HDIGGTRCVQIRNWF-DYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLL 204
                 R VQ      D       +F +  P  S+ D L+  SY +   ++ R+  RQ+L
Sbjct: 64  E-----RIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLK--SYGALTENVTRKYTRQIL 116

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           E V+++H   ++H D+K  NIL  S   VK+ D+                  S  ++ I 
Sbjct: 117 EGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFG----------------ASKRLQTIC 160

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
              T  +      V  T ++ +PEVI G G+    D+WSVGC +VE+
Sbjct: 161 LSGTGMKS-----VTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEM 202

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 75.5 bits (185), Expect = 3e-15
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 45/233 (19%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-EAAMIEIDVLQRLARHDIGG 152
           + I+ ++G+G FG+V +  + E   L A K++ + ++   E  M+EI++L       I  
Sbjct: 14  WEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYI-- 71

Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
              V++   F +   + I+ E       D +     R      ++ + RQ+LE++ ++H 
Sbjct: 72  ---VKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHS 128

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST---- 268
           +++IH DLK  N+LL                 + DG           IKL DFG +    
Sbjct: 129 MKIIHRDLKAGNVLL-----------------TLDGD----------IKLADFGVSAKNV 161

Query: 269 -TFEHQDHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGE 315
            T + +D    + T ++ APEV++        ++Y  D+WS+G  L+E+   E
Sbjct: 162 KTLQRRDS--FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIE 212

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 73.7 bits (181), Expect = 7e-15
 Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 33/229 (14%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSIN-KYREAAMIEIDVLQRLARHDI 150
           + IL+K+G+G+FG V +      K + A+K +    +N + RE A+ E  VL +L    I
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYI 61

Query: 151 GGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
                ++    F  +  + IV E      L+  L+    R  P D V     Q+L  +A 
Sbjct: 62  -----IRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAH 116

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H  +++H D+K  N+ L + + VK+ D   +++   D + F N                
Sbjct: 117 LHSKKILHRDIKSLNLFLDAYDNVKIGDLG-VAKLLSDNTNFANT--------------- 160

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
                   +V T +Y +PE+     +N   D+W++G +L E C+G+  F
Sbjct: 161 --------IVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPF 201

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 48/241 (19%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--EIDVLQRLARHDI 150
            Y ++ ++G GT+G V +  D    ELVAIK++  +    +  +I  EI +L+   RH  
Sbjct: 4   DYELIQRIGSGTYGDVYKARDIATGELVAIKVI-KLEPGDDFEIIQQEISMLKE-CRHP- 60

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
                V     +  R+ + IV E   G SL D  +           +  + R+ L+ +A+
Sbjct: 61  ---NIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTR-GPLSELQIAYVCRETLKGLAY 116

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG--- 266
           +HE   IH D+K  NILL                 ++DG           +KL DFG   
Sbjct: 117 LHETGKIHRDIKGANILL-----------------TEDGD----------VKLADFGVSA 149

Query: 267 --STTFEHQDHSYVVSTRHYRAPEVI---LGLGWNYPCDLWSVGCILVELCSGE-ALFQT 320
             + T         + T ++ APEV       G++  CD+W++G   +EL   +  +F  
Sbjct: 150 QLTATI--AKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDL 207

Query: 321 H 321
           H
Sbjct: 208 H 208

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 49/233 (21%)

Query: 95  RILSKMGEGTFGQVVECF----DNEKKELVAIKIVRSINKYREAAMI--EIDVLQRLARH 148
            +  K+GEG FG+V +       + K+  VA+K ++     ++      E  ++++L  H
Sbjct: 2   TLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKL-DH 60

Query: 149 D-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGR 201
                 +G   C +          + IV E    G  L D+LRKN  +   +  +     
Sbjct: 61  PNIVKLLGV--CTE-------EEPLMIVMEYMPGG-DLLDYLRKNRPKELSLSDLLSFAL 110

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAI 260
           Q+   + ++     IH DL   N L+     VK+ D  F LSR   D  Y+K       I
Sbjct: 111 QIARGMEYLESKNFIHRDLAARNCLVGENLVVKISD--FGLSRDLYDDDYYKVKGGKLPI 168

Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
           +                      + APE +    +    D+WS G +L E+ +
Sbjct: 169 R----------------------WMAPESLKEGKFTSKSDVWSFGVLLWEIFT 199

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 72.9 bits (179), Expect = 2e-14
 Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 80/265 (30%)

Query: 162 FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDL 220
           F  ++++ +V E L G      ++       P D  ++   +++  V  +H+  +IH D+
Sbjct: 66  FQSKDYLYLVMEYLNGGDCASLIKTLGG--LPEDWAKQYIAEVVLGVEDLHQRGIIHRDI 123

Query: 221 KPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVS 280
           KPEN+L+    ++K+ D+  LSR+  +   F                           V 
Sbjct: 124 KPENLLIDQTGHLKLTDFG-LSRNGLENKKF---------------------------VG 155

Query: 281 TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHH 340
           T  Y APE ILG+G +   D WS+GC++ E   G   F                   P  
Sbjct: 156 TPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAET---------------PDA 200

Query: 341 MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ 400
           +      R         R++WP+      S  AV                      DL+ 
Sbjct: 201 VFDNILSR---------RINWPEEVKEFCSPEAV----------------------DLIN 229

Query: 401 GLLRYDPAERLKA---REALRHPFF 422
            LL  DPA+RL A   +E   HPFF
Sbjct: 230 RLLCMDPAKRLGANGYQEIKSHPFF 254

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 72.7 bits (178), Expect = 2e-14
 Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 39/228 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV------RSINKYREAAMIEIDVLQRLAR 147
           +R+   +G G FG+V  C+D +    +A+K V      +  +K   A   EI +L+ L R
Sbjct: 4   WRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNL-R 62

Query: 148 HDIGGTRCVQ----IRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
           HD    R VQ    +R+  + +  I + +   G S+ D L+  +Y +   ++ R   RQ+
Sbjct: 63  HD----RIVQYYGCLRDPEEKKLSIFVEYMP-GGSIKDQLK--AYGALTENVTRRYTRQI 115

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L+ V+++H   ++H D+K  NIL  SA  VK+ D+                  S  I+ I
Sbjct: 116 LQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFG----------------ASKRIQTI 159

Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
               T  +      V  T ++ +PEVI G G+    D+WSV C +VE+
Sbjct: 160 CMSGTGIKS-----VTGTPYWMSPEVISGEGYGRKADVWSVACTVVEM 202

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 74.4 bits (182), Expect = 3e-14
 Identities = 76/263 (28%), Positives = 124/263 (47%), Gaps = 40/263 (15%)

Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAA--MIEIDVL 142
           GE+    Y ++ K+G G FG+V        +E    K +  R + K RE +  +IE++V+
Sbjct: 8   GESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGL-KEREKSQLVIEVNVM 66

Query: 143 QRLARHDIGGTRCV-QIRNWFDYRNHICIVFEKLGPSLYDFLR--KNSYRSF-PID--LV 196
           + L   +I   R + +  N  + + +I + F   G    D  R  +  Y+ F  I+   +
Sbjct: 67  RELKHKNI--VRYIDRFLNKANQKLYILMEFCDAG----DLSRNIQKCYKMFGKIEEHAI 120

Query: 197 RELGRQLLESVAFMHEL-------RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS 249
            ++ RQLL ++A+ H L       R++H DLKP+NI L +           +    K  +
Sbjct: 121 VDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTG----------IRHIGKITA 170

Query: 250 YFKNLPKSSAIKLIDFG---STTFEHQDHSYVVSTRHYRAPEVILGLGWNY--PCDLWSV 304
              NL      K+ DFG   +   E   HS  V T +Y +PE++L    +Y    D+W++
Sbjct: 171 QANNLNGRPIAKIGDFGLSKNIGIESMAHS-CVGTPYYWSPELLLHETKSYDDKSDMWAL 229

Query: 305 GCILVELCSGEALFQTHENLEHL 327
           GCI+ ELCSG+  F    N   L
Sbjct: 230 GCIIYELCSGKTPFHKANNFSQL 252

Length = 1021

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 71.2 bits (174), Expect = 7e-14
 Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 40/234 (17%)

Query: 94  YRILSKMGEGTFGQVVEC---FDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHD 149
           ++I  K+G G F +V       D +   L  ++I   ++ K R+  + EID+L++L   +
Sbjct: 4   FQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPN 63

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE-----KLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
           +     ++  + F   N + IV E      L   +  F  K   R  P   V +   QL 
Sbjct: 64  V-----IKYLDSFIEDNELNIVLELADAGDLSQMIKYF--KKQKRLIPERTVWKYFVQLC 116

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
            +V  MH  R++H D+KP N+ + +   VK+ D          G +F +           
Sbjct: 117 SAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGL-------GRFFSS----------- 158

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
              TT  H     +V T +Y +PE I   G+N+  D+WS+GC+L E+ + ++ F
Sbjct: 159 --KTTAAHS----LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPF 206

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 14/120 (11%)

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS--RSSKDGSYFKNLPKSSAIKLIDFG 266
            +H+L  IH D+KP+N+LL +  ++K+ D+   +  + S    +++ L  +     +DF 
Sbjct: 116 SIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFI 175

Query: 267 STTFEHQD--HSY----------VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           S     +    ++           V T  Y APEV L  G+N  CD WS+G I+ E+  G
Sbjct: 176 SKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVG 235

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 70.5 bits (172), Expect = 1e-13
 Identities = 66/253 (26%), Positives = 115/253 (45%), Gaps = 39/253 (15%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVR------SINKYREAAMIEIDVLQRLARHDIGGT 153
           +G+G FG+V  C+D +    +A K V+        +K   A   EI +L+ L +H+    
Sbjct: 10  LGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNL-QHE---- 64

Query: 154 RCVQIRNWF-DYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           R VQ      D       +F +  P  S+ D L+  +Y +    + R+  RQ+LE ++++
Sbjct: 65  RIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLK--AYGALTESVTRKYTRQILEGMSYL 122

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H   ++H D+K  NIL  SA  VK+ D+                  S  ++ I    T  
Sbjct: 123 HSNMIVHRDIKGANILRDSAGNVKLGDFG----------------ASKRLQTICMSGTGI 166

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
                  V  T ++ +PEVI G G+    D+WS+GC +VE+ + +  +  +E +  +  +
Sbjct: 167 RS-----VTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKI 221

Query: 331 --ERVLGPLPHHM 341
             +     LP H+
Sbjct: 222 ATQPTNPQLPSHI 234

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 59/261 (22%), Positives = 112/261 (42%), Gaps = 72/261 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
            + ++  +GEGT+G+V +    +  +LVAIKI+  I    E    E ++L++ + H    
Sbjct: 7   IFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNH---- 62

Query: 153 TRCVQIRNWFDY------RNHIC------IVFEKL-GPSLYDFLR--KNSYRSFPIDLVR 197
                  N   +      +N         +V E   G S+ D ++  +   +    + + 
Sbjct: 63  ------PNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIA 116

Query: 198 ELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKS 257
            + R+ L  +A++HE ++IH D+K +NILL                            K+
Sbjct: 117 YILRETLRGLAYLHENKVIHRDIKGQNILLT---------------------------KN 149

Query: 258 SAIKLIDFG----STTFEHQDHSYVVSTRHYRAPEVI-----LGLGWNYPCDLWSVGCIL 308
           + +KL+DFG      +   + +++ + T ++ APEVI         ++   D+WS+G   
Sbjct: 150 AEVKLVDFGVSAQLDSTLGRRNTF-IGTPYWMAPEVIACDEQPDASYDARSDVWSLGITA 208

Query: 309 VELCSGE----------ALFQ 319
           +EL  G+          ALF+
Sbjct: 209 IELADGKPPLCDMHPMRALFK 229

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 40/225 (17%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVR-SIN-KYREAAMIEIDVLQRLARHDIGGTR 154
           L ++G G  G V +       +++A+K +R  IN   ++  + E+D+L +          
Sbjct: 6   LGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHK--------CN 57

Query: 155 C---VQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               V     F     I I  E +     D + K      P  ++ ++   +L+ + ++H
Sbjct: 58  SPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLH 117

Query: 212 E-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           E  ++IH D+KP NIL+ S   +K+ D+  +S                  +L++  + TF
Sbjct: 118 EKHKIIHRDVKPSNILVNSRGQIKLCDFG-VSG-----------------QLVNSLAKTF 159

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
                   V T  Y APE I G  ++   D+WS+G  L+EL +G 
Sbjct: 160 --------VGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGR 196

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 75/340 (22%), Positives = 133/340 (39%), Gaps = 96/340 (28%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHD 149
           +  +  +G G+FG+V+        +  A+KI+    I K ++   +  E  +LQ + RH 
Sbjct: 3   FEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSI-RHP 61

Query: 150 IGGTRCVQIRNWF-DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
                 V +   F D  N + +V E + G  L+  LRK+    FP  + R    Q++ ++
Sbjct: 62  F----LVNLYGSFQDDSN-LYLVMEYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLAL 114

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++H L +++ DLKPEN+LL S  Y+K+ D+ F                    K +   +
Sbjct: 115 EYLHSLDIVYRDLKPENLLLDSDGYIKITDFGF-------------------AKRVKGRT 155

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
            T        +  T  Y APE+IL  G+    D W++G ++ E+ +G   F        +
Sbjct: 156 YT--------LCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDD---NPI 204

Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
            + E++L                       ++ +P                         
Sbjct: 205 QIYEKIL---------------------EGKVRFP-----------------------SF 220

Query: 388 VDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                 D  DL++ LL+ D  +RL        +   HP+F
Sbjct: 221 FS---PDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWF 257

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 70.2 bits (172), Expect = 2e-13
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 45/230 (19%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKY-------REAAMI-----EIDVLQRLAR 147
           +G+GT+G+V    +    E++A+K V  +          R+  M+     EI+ L+ L  
Sbjct: 9   IGKGTYGRVYLALNVTTGEMMAVKQVE-LPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
            +I     VQ   +     ++ I  E + G S+   LR   Y  F   LVR    Q+LE 
Sbjct: 68  LNI-----VQYLGFETTEEYLSIFLEYVPGGSIGSCLRT--YGRFEEQLVRFFTEQVLEG 120

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +A++H   ++H DLK +N+L+ +    K+ D+  +S+ S D   + N    S        
Sbjct: 121 LAYLHSKGILHRDLKADNLLVDADGICKISDFG-ISKKSDD--IYDNDQNMS------MQ 171

Query: 267 STTFEHQDHSYVVSTRHYRAPEVI--LGLGWNYPCDLWSVGCILVELCSG 314
            + F             + APEVI     G++   D+WS+GC+++E+ +G
Sbjct: 172 GSVF-------------WMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAG 208

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 70.5 bits (172), Expect = 2e-13
 Identities = 85/350 (24%), Positives = 144/350 (41%), Gaps = 66/350 (18%)

Query: 99  KMGEGTFGQVVECF--DNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           K+G GT+G V +    D + ++  A+K +        +A  EI +L+ L   ++   + V
Sbjct: 8   KVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG-ISMSACREIALLRELKHPNVIALQKV 66

Query: 157 QIRN-----W--FDYRNHI---CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
            + +     W  FDY  H     I F +   +             P  +V+ L  Q+L+ 
Sbjct: 67  FLSHSDRKVWLLFDYAEHDLWHIIKFHRASKA------NKKPMQLPRSMVKSLLYQILDG 120

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H   ++H DLKP NIL++                          P+   +K+ D G
Sbjct: 121 IHYLHANWVLHRDLKPANILVMGEG-----------------------PERGRVKIADMG 157

Query: 267 STTFEHQ------DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQ 319
                +       D   VV T  YRAPE++LG   +    D+W++GCI  EL + E +F 
Sbjct: 158 FARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH 217

Query: 320 THE------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGAT-SRDSMR 372
             +      N  H   ++R+       M   AD+  E   +       P+  T  +D  R
Sbjct: 218 CRQEDIKTSNPFHHDQLDRIFSV----MGFPADKDWEDIRKM------PEYPTLQKDFRR 267

Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +    L   + +H       +  LLQ LL  DP +R+ + +AL+ P+F
Sbjct: 268 TTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF 317

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 70.1 bits (171), Expect = 3e-13
 Identities = 85/351 (24%), Positives = 144/351 (41%), Gaps = 68/351 (19%)

Query: 99  KMGEGTFGQVVECF--DNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           K+G GT+G V +    D +     A+K +        +A  EI +L+ L   ++   + V
Sbjct: 8   KVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG-ISMSACREIALLRELKHPNVISLQKV 66

Query: 157 QIRN-----W--FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDL----VRELGRQLLE 205
            + +     W  FDY  H           +  F R +     P+ L    V+ L  Q+L+
Sbjct: 67  FLSHADRKVWLLFDYAEHDLW-------HIIKFHRASKANKKPVQLPRGMVKSLLYQILD 119

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            + ++H   ++H DLKP NIL++                          P+   +K+ D 
Sbjct: 120 GIHYLHANWVLHRDLKPANILVMGEG-----------------------PERGRVKIADM 156

Query: 266 GSTTFEHQ------DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALF 318
           G     +       D   VV T  YRAPE++LG   +    D+W++GCI  EL + E +F
Sbjct: 157 GFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF 216

Query: 319 QTHE------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGAT-SRDSM 371
              +      N  H   ++R+     + M   AD+  E   +       P+ +T  +D  
Sbjct: 217 HCRQEDIKTSNPYHHDQLDRIF----NVMGFPADKDWEDIKKM------PEHSTLMKDFR 266

Query: 372 RAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           R  +    L   + +H          LLQ LL  DP +R+ + +A++ P+F
Sbjct: 267 RNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF 317

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 69.2 bits (169), Expect = 3e-13
 Identities = 80/342 (23%), Positives = 129/342 (37%), Gaps = 105/342 (30%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVR-------SINKYREAAMIEIDVLQRLARHDIG- 151
           +G+G +G V  C    + +L+A+K V        +  K  E    E+D+L+ L   +I  
Sbjct: 8   LGKGAYGTVY-CGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQ 66

Query: 152 --GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
             GT C+         N I I  E + G S+   L  N +   P  +  +  +Q+L+ VA
Sbjct: 67  YLGT-CLD-------DNTISIFMEFVPGGSISSIL--NRFGPLPEPVFCKYTKQILDGVA 116

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H   ++H D+K  N++L+                            +  IKLIDFG  
Sbjct: 117 YLHNNCVVHRDIKGNNVMLMP---------------------------NGIIKLIDFGCA 149

Query: 269 -----TFEHQDHSYVVSTRH----YRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                   H  HS ++ + H    + APEVI   G+    D+WS+GC + E+ +G+    
Sbjct: 150 RRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLA 209

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
           + + L  +  +    G +P                                        R
Sbjct: 210 SMDRLAAMFYIGAHRGLMP----------------------------------------R 229

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
           LP       D  +   ID +   L  D  ER  A + LRH F
Sbjct: 230 LP-------DSFSAAAIDFVTSCLTRDQHERPSALQLLRHDF 264

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 50/233 (21%)

Query: 95  RILSKMGEGTFGQVVECF----DNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARH 148
            +  K+GEG FG+V +        +KK  VA+K ++  +  +  E  + E  ++++L  H
Sbjct: 2   TLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKL-DH 60

Query: 149 D-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGR 201
                 +G   C +          + IV E  + G  L  +LRKN  +    DL+     
Sbjct: 61  PNVVKLLGV--CTE-------EEPLYIVMEYMEGG-DLLSYLRKNRPKLSLSDLL-SFAL 109

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAI 260
           Q+   + ++     IH DL   N L+     VK+ D  F LSR   D  Y++       I
Sbjct: 110 QIARGMEYLESKNFIHRDLAARNCLVGENLVVKISD--FGLSRDLYDDDYYRKRGGKLPI 167

Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
           +                      + APE +    +    D+WS G +L E+ +
Sbjct: 168 R----------------------WMAPESLKEGKFTSKSDVWSFGVLLWEIFT 198

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 68.1 bits (166), Expect = 6e-13
 Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 36/232 (15%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHD 149
           +RI  K+G G F +V           VA+K V+  +    K R   + EID+L++L   +
Sbjct: 4   FRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN 63

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLR--KNSYRSFPIDLVRELGRQLLES 206
           +     ++    F   N + IV E      L   ++  K   R  P   V +   QL  +
Sbjct: 64  V-----IKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSA 118

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +  MH  R++H D+KP N+ + +   VK+ D          G +F +             
Sbjct: 119 LEHMHSRRVMHRDIKPANVFITATGVVKLGDLGL-------GRFFSS------------- 158

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            TT  H     +V T +Y +PE I   G+N+  D+WS+GC+L E+ + ++ F
Sbjct: 159 KTTAAHS----LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPF 206

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 67.5 bits (166), Expect = 9e-13
 Identities = 53/235 (22%), Positives = 93/235 (39%), Gaps = 51/235 (21%)

Query: 95  RILSKMGEGTFGQVVECF----DNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARH 148
            +  K+GEG FG+V +          +  VA+K ++  +  + RE  + E  ++++L  H
Sbjct: 2   ELGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKL-SH 60

Query: 149 D-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGR 201
                 +G   C Q          + IV E    G  L DFLRK+      +  + ++  
Sbjct: 61  PNIVRLLGV--CTQ-------GEPLYIVTEYMPGG-DLLDFLRKHG-EKLTLKDLLQMAL 109

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKS-SA 259
           Q+ + + ++     +H DL   N L+     VK+ D  F LSR   +  Y++        
Sbjct: 110 QIAKGMEYLESKNFVHRDLAARNCLVTENLVVKISD--FGLSRDIYEDDYYRKRGGGKLP 167

Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK                      + APE +    +    D+WS G +L E+ + 
Sbjct: 168 IK----------------------WMAPESLKDGKFTSKSDVWSFGVLLWEIFTL 200

Length = 258

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 57/250 (22%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           +G+GT+G V    D   +  +AIK I    ++Y +    EI +   L   +I     VQ 
Sbjct: 16  LGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNI-----VQY 70

Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLR-KNSYRSFPIDLVRELGRQLLESVAFMHELRLI 216
                      I  E++ G SL   LR K          +    +Q+LE + ++H+ +++
Sbjct: 71  LGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIV 130

Query: 217 HTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-------- 268
           H D+K +N+L        V  Y                  S  +K+ DFG++        
Sbjct: 131 HRDIKGDNVL--------VNTY------------------SGVVKISDFGTSKRLAGINP 164

Query: 269 ---TFEHQDHSYVVSTRHYRAPEVI-LGL-GWNYPCDLWSVGCILVELCSGEALFQTHEN 323
              TF          T  Y APEVI  G  G+  P D+WS+GC +VE+ +G+  F   E 
Sbjct: 165 CTETF--------TGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPF--IEL 214

Query: 324 LEHLAMMERV 333
            E  A M +V
Sbjct: 215 GEPQAAMFKV 224

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 81/332 (24%), Positives = 132/332 (39%), Gaps = 89/332 (26%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAA--MIEIDVLQRLARHDIGGTRC 155
           +G+G+FG+V+        +  A+K++  ++I K +E    M E +VL +  +H       
Sbjct: 3   IGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPF----L 58

Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           V +   F   + +  V + + G  L+  L++   RSFP    R    ++  ++ ++H L 
Sbjct: 59  VGLHYSFQTADKLYFVLDYVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSLN 116

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +I+ DLKPENILL S  +V + D+       K+G              I+   TT     
Sbjct: 117 IIYRDLKPENILLDSQGHVVLTDFGL----CKEG--------------IEHSKTT----- 153

Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVL 334
            S    T  Y APEV+    ++   D W +G +L E+  G   F + +  E   M + +L
Sbjct: 154 -STFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAE---MYDNIL 209

Query: 335 GPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD 394
                                                    K LRL   I     H    
Sbjct: 210 N----------------------------------------KPLRLKPNISVSARH---- 225

Query: 395 LIDLLQGLLRYDPAERLKAREALR----HPFF 422
              LL+GLL+ D  +RL A++       H FF
Sbjct: 226 ---LLEGLLQKDRTKRLGAKDDFLEIKNHVFF 254

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 73/344 (21%), Positives = 127/344 (36%), Gaps = 94/344 (27%)

Query: 94  YRILSKMGEGTFGQV--VECFDNEKKELVAIKIVRSINKYR---EAAMIEIDVLQRLARH 148
           Y ++  +G G    V    C  N   E VAIK +  + K +   +    E+  + +    
Sbjct: 3   YELIEVIGVGATAVVYAAICLPN--NEKVAIKRI-DLEKCQTSVDELRKEVQAMSQCNHP 59

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLR-KNSYRSFPIDLVRELGRQLLES 206
           ++           F   + + +V   L G SL D ++           ++  + +++L+ 
Sbjct: 60  NVVKYYTS-----FVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKG 114

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H    IH D+K  NILL                  +DGS          +K+ DFG
Sbjct: 115 LEYLHSNGQIHRDIKAGNILL-----------------GEDGS----------VKIADFG 147

Query: 267 --STTFEHQDHSY-----VVSTRHYRAPEVI-LGLGWNYPCDLWSVGCILVELCSGEALF 318
             ++  +  D +       V T  + APEV+    G+++  D+WS G   +EL +G A +
Sbjct: 148 VSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPY 207

Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
                      M+ ++  L +                    D P   T  D  +   K  
Sbjct: 208 S------KYPPMKVLMLTLQN--------------------DPPSLETGAD-YKKYSKSF 240

Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           R               +I L    L+ DP++R  A E L+H FF
Sbjct: 241 R--------------KMISL---CLQKDPSKRPTAEELLKHKFF 267

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 84/341 (24%), Positives = 132/341 (38%), Gaps = 90/341 (26%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--EIDVLQRLARHDIG--- 151
           L ++G+G+FG+V +  DN  KE+VAIKI+       E   I  EI VL +     I    
Sbjct: 9   LERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYY 68

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           G+     + W        I+ E L G S  D L+        I  +    R++L+ + ++
Sbjct: 69  GSYLKGTKLW--------IIMEYLGGGSALDLLKPGPLEETYIATIL---REILKGLDYL 117

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R IH D+K  N+LL     VK+ D+    + +            + IK   F  T F
Sbjct: 118 HSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLT-----------DTQIKRNTFVGTPF 166

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
                        + APEVI    +++  D+WS+G   +EL  GE     + +L  +   
Sbjct: 167 -------------WMAPEVIKQSAYDFKADIWSLGITAIELAKGEP---PNSDLHPM--- 207

Query: 331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH 390
            RVL  +P +                                        P L  Q+   
Sbjct: 208 -RVLFLIPKN--------------------------------------SPPTLEGQY--- 225

Query: 391 SAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGF 431
            +    + ++  L  DP  R  A+E L+H F TR  ++  F
Sbjct: 226 -SKPFKEFVEACLNKDPRFRPTAKELLKHKFITRYTKKTSF 265

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 39/244 (15%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK---IVRSINKYREAAMIEIDVLQRLARHD 149
           RY I+ K+GEG+FG++         E   IK   + +   K +EA+  E+ +L ++   +
Sbjct: 1   RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPN 60

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     V     F     + IV E   G  L   + +     F  D +     Q+   + 
Sbjct: 61  I-----VTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLK 115

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +H+ +++H D+K +NI              FLS++                KL DFG  
Sbjct: 116 HIHDRKILHRDIKSQNI--------------FLSKNGM------------VAKLGDFGIA 149

Query: 269 TFEHQDHSYV---VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
              +         V T +Y +PE+     +N   D+WS+GC+L ELC+ +  F+ + NL 
Sbjct: 150 RQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGN-NLH 208

Query: 326 HLAM 329
            L +
Sbjct: 209 QLVL 212

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 67.0 bits (163), Expect = 3e-12
 Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 36/243 (14%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +G+GTFG+V+   +    +  A+KI++    I K   A  +    + +  RH        
Sbjct: 3   LGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPF----LT 58

Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
            ++  F  ++ +C V E + G  L+  L +   R F  D  R  G +++ ++ ++H  ++
Sbjct: 59  SLKYSFQTKDRLCFVMEYVNGGELFFHLSRE--RVFSEDRTRFYGAEIVSALDYLHSGKI 116

Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           ++ DLK EN++L    ++K+ D+        D +  K                       
Sbjct: 117 VYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTF--------------------- 155

Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLEHLAMMERV 333
                T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L  L +ME +
Sbjct: 156 ---CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEDI 212

Query: 334 LGP 336
             P
Sbjct: 213 KFP 215

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 66.9 bits (163), Expect = 4e-12
 Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 32/233 (13%)

Query: 94  YRILSKMGEGTFGQVV-ECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           +  +  +G G+FG+V+   + NE    VAIK        ++  +  +   +++  + I  
Sbjct: 32  FNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNY-INH 90

Query: 153 TRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             CV +   F   +++ +V E  +G   + FLR+N  + FP D+      Q++    ++ 
Sbjct: 91  PFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRN--KRFPNDVGCFYAAQIVLIFEYLQ 148

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L +++ DLKPEN+LL                  KDG           IK+ DFG     
Sbjct: 149 SLNIVYRDLKPENLLL-----------------DKDG----------FIKMTDFGFAKVV 181

Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
                 +  T  Y APE++L +G     D W++G  + E+  G   F  +E L
Sbjct: 182 DTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPL 234

Length = 340

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 65.8 bits (160), Expect = 4e-12
 Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 39/224 (17%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQR----LARHDIGG 152
           L ++G+G+FG+V +  DN  +++VAIKI+       E A  EI+ +Q+    L++ D   
Sbjct: 9   LERIGKGSFGEVFKGIDNRTQQVVAIKIID-----LEEAEDEIEDIQQEITVLSQCD--S 61

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               +    +     + I+ E L G S  D LR   +  F I     + +++L+ + ++H
Sbjct: 62  PYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQI---ATMLKEILKGLDYLH 118

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
             + IH D+K  N+LL     VK+ D+    + +            + IK   F  T F 
Sbjct: 119 SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLT-----------DTQIKRNTFVGTPF- 166

Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
                       + APEVI    ++   D+WS+G   +EL  GE
Sbjct: 167 ------------WMAPEVIQQSAYDSKADIWSLGITAIELAKGE 198

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 66.6 bits (162), Expect = 4e-12
 Identities = 68/250 (27%), Positives = 108/250 (43%), Gaps = 44/250 (17%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAA--MIEIDVLQRLARHDIGGTRC 155
           +G+GTFG+V+   +       A+KI++   I    E A  + E  VLQ  +RH       
Sbjct: 3   LGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN-SRHPF----L 57

Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH-EL 213
             ++  F   + +C V E   G  L+  L +   R F  D  R  G +++ ++ ++H E 
Sbjct: 58  TALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEK 115

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
            +++ DLK EN++L    ++K+ D+       KDG+  K                TF   
Sbjct: 116 NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK----------------TF--- 156

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLEHLAMME 331
                  T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L  L +ME
Sbjct: 157 -----CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILME 211

Query: 332 -----RVLGP 336
                R L P
Sbjct: 212 EIRFPRTLSP 221

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 66.2 bits (161), Expect = 6e-12
 Identities = 78/336 (23%), Positives = 124/336 (36%), Gaps = 95/336 (28%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMI-EIDVLQRLARHDIGGTRC 155
           +G+GTFG+V+   +       A+KI+R    I K   A  + E  VLQ   RH       
Sbjct: 3   LGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN-TRHPFLTA-- 59

Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
             ++  F   + +C V E   G  L+  L +   R F  +  R  G +++ ++ ++H   
Sbjct: 60  --LKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHSRD 115

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +++ D+K EN++L    ++K+ D+        DG+  K                TF    
Sbjct: 116 VVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMK----------------TF---- 155

Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLEHLAMMER 332
                 T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L  L +ME 
Sbjct: 156 ----CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEE 211

Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
           +                                             R P  +        
Sbjct: 212 I---------------------------------------------RFPRTLSPEAK--- 223

Query: 393 GDLIDLLQGLLRYDPAERL-----KAREALRHPFFT 423
                LL GLL+ DP +RL      A+E + H FF 
Sbjct: 224 ----SLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFL 255

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 73/337 (21%), Positives = 127/337 (37%), Gaps = 94/337 (27%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-------EAAMIEIDVLQRLARHDIGG 152
           +G+G FG+V  C      ++ A K    ++K R       + A+ E  +L++++   I  
Sbjct: 1   LGKGGFGEVCACQVKATGKMYACK---KLDKKRLKKRKGEQMALNEKKILEKVSSRFI-- 55

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V +   F+ ++ +C+V   + G  L   +       FP         Q++  +  +H
Sbjct: 56  ---VSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLH 112

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
           + R+++ DLKPEN+LL     V++ D                     A++L   G     
Sbjct: 113 QRRIVYRDLKPENVLLDDHGNVRISDLGL------------------AVELKG-GKKI-- 151

Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH-ENLEHLAMM 330
                    T  Y APEV+ G  +++  D +++GC L E+ +G + F+   E +E   + 
Sbjct: 152 ---KGR-AGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELK 207

Query: 331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH 390
            R L              A +Y         PD  +                        
Sbjct: 208 RRTL------------EMAVEY---------PDKFSP----------------------- 223

Query: 391 SAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
              +  DL + LL+ DP +RL      A E   HP F
Sbjct: 224 ---EAKDLCEALLQKDPEKRLGCRGGSADEVREHPLF 257

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 47/247 (19%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--EIDVLQRLARHDIG 151
           Y+ L  +G G +G V          +VA+KI+       + + I  E+ +L +L +    
Sbjct: 3   YQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPP 62

Query: 152 GTRCVQIRNWFDYRN--HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                  + +  Y     + I+ E   G S+   ++        I ++    R++L ++ 
Sbjct: 63  NI----TKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVII---REVLVALK 115

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDY----KFLSRSSKDGSYFKNLPKSSAIKLID 264
           ++H++ +IH D+K  NIL+ +   VK+ D+         SSK                  
Sbjct: 116 YIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSK------------------ 157

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
              +TF        V T ++ APEVI  G  ++   D+WS+G  + E+ +G   +   + 
Sbjct: 158 --RSTF--------VGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVD- 206

Query: 324 LEHLAMM 330
               AMM
Sbjct: 207 -AFRAMM 212

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 82/344 (23%), Positives = 136/344 (39%), Gaps = 85/344 (24%)

Query: 92  PRYRI--LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD 149
           PR  +    K+GEG+ G V    D      VA+K +    + R   +    V+ R  +H 
Sbjct: 17  PRSYLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHP 76

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 V++ + +   + + +V E L G +L D +         I  V      +L++++
Sbjct: 77  ----NIVEMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATV---CLAVLKALS 129

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           F+H   +IH D+K ++ILL S   VK+ D+ F ++ SK+      +P+  ++        
Sbjct: 130 FLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKE------VPRRKSL-------- 175

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                     V T ++ APEVI  L +    D+WS+G +++E+  GE     + N   L 
Sbjct: 176 ----------VGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEP---PYFNEPPLQ 222

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            M+R+                                  RD+         LP  +    
Sbjct: 223 AMKRI----------------------------------RDN---------LPPKLKNLH 239

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
             S   L   L  +L  DPA+R  A E L HPF      + G P
Sbjct: 240 KVSP-RLRSFLDRMLVRDPAQRATAAELLNHPFL----AKAGPP 278

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 47/237 (19%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRC 155
           +G G+FG+V         E  AIK ++       K  +    E  +L  L+   I     
Sbjct: 26  LGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFI----- 80

Query: 156 VQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           V +   F   N +  + E  +G  L+  LRK     FP D+ +    +L+ +  ++H   
Sbjct: 81  VNMMCSFQDENRVYFLLEFVVGGELFTHLRKAG--RFPNDVAKFYHAELVLAFEYLHSKD 138

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +I+ DLKPEN+LL +  +VKV D+ F  +                              D
Sbjct: 139 IIYRDLKPENLLLDNKGHVKVTDFGFAKKVP----------------------------D 170

Query: 275 HSYVV-STRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG------EALFQTHENL 324
            ++ +  T  Y APEVI   G     D W++G +L E  +G      +  F+ +E +
Sbjct: 171 RTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKI 227

Length = 329

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 64.7 bits (157), Expect = 1e-11
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 34/240 (14%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLARHDIG 151
           +Y    K+G+G  G V    D    + VAIK +    + ++  +I EI V++ L   +I 
Sbjct: 20  KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNI- 78

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               V   + F   + + +V E L G SL D + +       I  V    R+ L+++ F+
Sbjct: 79  ----VNFLDSFLVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAV---CRECLQALEFL 131

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  ++IH D+K +N+LL     VK+ D+ F ++                         T 
Sbjct: 132 HANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQ------------------------ITP 167

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           E    S +V T ++ APEV+    +    D+WS+G + +E+  GE  +     L  L ++
Sbjct: 168 EQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLI 227

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 44/230 (19%)

Query: 97  LSKMGEGTFGQVVEC----FDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHDI 150
           + ++GEG FG+V  C      +   E VA+K +      ++R     EI++L+ L   +I
Sbjct: 9   IKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENI 68

Query: 151 GGTRCVQIRNWFD--YRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVREL--GRQLLE 205
                V+ +   +      + ++ E L   SL D+L+++  +   I+L R L    Q+ +
Sbjct: 69  -----VKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQ---INLKRLLLFSSQICK 120

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR--SSKDGSYFKNLPKSSAIKLI 263
            + ++   R IH DL   NIL+ S + VK+ D+  L++        Y+   P  S I   
Sbjct: 121 GMDYLGSQRYIHRDLAARNILVESEDLVKISDFG-LAKVLPEDKDYYYVKEPGESPIF-- 177

Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                               + APE +    ++   D+WS G  L EL +
Sbjct: 178 --------------------WYAPECLRTSKFSSASDVWSFGVTLYELFT 207

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 73/348 (20%), Positives = 127/348 (36%), Gaps = 78/348 (22%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           Y ++  +  G+ G+V       + + V +KI +     +   +IE  +LQ +    +   
Sbjct: 68  YTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQ-----KGTTLIEAMLLQNVNHPSV--- 119

Query: 154 RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
             +++++        C+V       LY +L K S R  PID    + +Q+LE + ++H  
Sbjct: 120 --IRMKDTLVSGAITCMVLPHYSSDLYTYLTKRS-RPLPIDQALIIEKQILEGLRYLHAQ 176

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
           R+IH D+K ENI +                                + + D G+  F   
Sbjct: 177 RIIHRDVKTENIFINDV---------------------------DQVCIGDLGAAQFPVV 209

Query: 274 DHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL------------CSGEALFQ 319
             ++  +  T    APEV+    +N   D+WS G +L E+             + E   +
Sbjct: 210 APAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVK 269

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
           +  +  HL  +   L   P         R  + F   A L+                  R
Sbjct: 270 SCHS--HLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLE------------------R 309

Query: 380 LPNL---IMQHVD-HSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
            P       Q V+    G+   L+  +L +D A R  A E L +P F 
Sbjct: 310 QPYTRYPCFQRVNLPIDGEF--LVHKMLTFDAAMRPSAEEILNYPMFA 355

Length = 357

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 44/230 (19%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           +Y    K+G+G  G V    D    + VAIK +    + ++  +I   ++ R  +H    
Sbjct: 20  KYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHP--- 76

Query: 153 TRCVQIRNWFD---YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                I N+ D     + + +V E L G SL D + +       I  V    R+ L+++ 
Sbjct: 77  ----NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAV---CRECLQALE 129

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           F+H  ++IH D+K +NILL                   DGS          +KL DFG  
Sbjct: 130 FLHSNQVIHRDIKSDNILL-----------------GMDGS----------VKLTDFGFC 162

Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
              T E    S +V T ++ APEV+    +    D+WS+G + +E+  GE
Sbjct: 163 AQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGE 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 63.9 bits (155), Expect = 3e-11
 Identities = 76/337 (22%), Positives = 135/337 (40%), Gaps = 80/337 (23%)

Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+GEG+ G V    +      VA+K++    + R   +    V+ R  +H       V++
Sbjct: 28  KIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQH----QNVVEM 83

Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
              +     + ++ E L G +L D + +       I  V E    +L+++ ++H   +IH
Sbjct: 84  YKSYLVGEELWVLMEFLQGGALTDIVSQTRLNEEQIATVCE---SVLQALCYLHSQGVIH 140

Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            D+K ++ILL     VK+ D+ F ++ SKD      +PK  ++                 
Sbjct: 141 RDIKSDSILLTLDGRVKLSDFGFCAQISKD------VPKRKSL----------------- 177

Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
            V T ++ APEVI    +    D+WS+G +++E+  GE                      
Sbjct: 178 -VGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEP--------------------- 215

Query: 338 PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID 397
                         YF             S   ++A+ +L   P   +++    +  L D
Sbjct: 216 -------------PYF-------------SDSPVQAMKRLRDSPPPKLKNAHKISPVLRD 249

Query: 398 LLQGLLRYDPAERLKAREALRHPFFTR-DVRRCGFPL 433
            L+ +L  +P ER  A+E L HPF  +  +  C  PL
Sbjct: 250 FLERMLTREPQERATAQELLDHPFLLQTGLPECLVPL 286

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 63.6 bits (154), Expect = 3e-11
 Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 46/246 (18%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLARHDIG 151
           +Y    K+G+G  G V    D    + VAIK +    + ++  +I EI V++        
Sbjct: 20  KYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRE------- 72

Query: 152 GTRCVQIRNWFDYR---NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             +   I N+ D     + + +V E L G SL D + +       I  V    R+ L+++
Sbjct: 73  -NKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAV---CRECLQAL 128

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            F+H  ++IH D+K +NILL                   DGS          +KL DFG 
Sbjct: 129 DFLHSNQVIHRDIKSDNILL-----------------GMDGS----------VKLTDFGF 161

Query: 267 --STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
               T E    S +V T ++ APEV+    +    D+WS+G + +E+  GE  +     L
Sbjct: 162 CAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL 221

Query: 325 EHLAMM 330
             L ++
Sbjct: 222 RALYLI 227

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 62/266 (23%), Positives = 113/266 (42%), Gaps = 48/266 (18%)

Query: 94  YRILSKMGEGTFGQVVEC-FDNEKKELVAIKIV-----------RSINKYREAAMIEIDV 141
           Y +L  +G G FG V +    N  + L+A+K +           R  +K     + E+ +
Sbjct: 2   YAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTI 61

Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLR--KNSYRSFPIDLVRE 198
           ++   RH       V+    F   + + IV + + G  L +     K   + F  + +  
Sbjct: 62  IKEQLRH----PNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWN 117

Query: 199 LGRQLLESVAFMH-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKS 257
           +  Q++ ++ ++H E R++H DL P NI+L   + V + D+  L++  +  S   +    
Sbjct: 118 IFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFG-LAKQKQPESKLTS---- 172

Query: 258 SAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
                               VV T  Y  PE++    +    D+W+ GCIL ++C+ +  
Sbjct: 173 --------------------VVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPP 212

Query: 318 FQTHENLEHLAM--MERVLGPLPHHM 341
           F +  N+  LA   +E V  PLP  M
Sbjct: 213 FYS-TNMLSLATKIVEAVYEPLPEGM 237

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 63.6 bits (154), Expect = 4e-11
 Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 46/246 (18%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLARHDIG 151
           +Y    K+G+G  G V    D    + VAI+ +    + ++  +I EI V++        
Sbjct: 21  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRE------- 73

Query: 152 GTRCVQIRNWFDYR---NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             +   I N+ D     + + +V E L G SL D + +       I  V    R+ L+++
Sbjct: 74  -NKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAV---CRECLQAL 129

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            F+H  ++IH D+K +NILL                   DGS          +KL DFG 
Sbjct: 130 EFLHSNQVIHRDIKSDNILL-----------------GMDGS----------VKLTDFGF 162

Query: 267 --STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
               T E    S +V T ++ APEV+    +    D+WS+G + +E+  GE  +     L
Sbjct: 163 CAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL 222

Query: 325 EHLAMM 330
             L ++
Sbjct: 223 RALYLI 228

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 76/328 (23%), Positives = 129/328 (39%), Gaps = 81/328 (24%)

Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+GEG+ G V         +LVA+K +    + R   +    V+ R  +H+      V++
Sbjct: 27  KIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHE----NVVEM 82

Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
            N +   + + +V E L G +L D +         I  V      +L++++ +H   +IH
Sbjct: 83  YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAV---CLAVLKALSVLHAQGVIH 139

Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            D+K ++ILL     VK+ D+ F ++ SK+    K+L                       
Sbjct: 140 RDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSL----------------------- 176

Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
            V T ++ APE+I  L +    D+WS+G +++E+  GE  +     L+ + M+   L P 
Sbjct: 177 -VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP- 234

Query: 338 PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID 397
                                                    +L NL      H     + 
Sbjct: 235 -----------------------------------------KLKNL------HKVSPSLK 247

Query: 398 -LLQGLLRYDPAERLKAREALRHPFFTR 424
             L  LL  DPA+R  A E L+HPF  +
Sbjct: 248 GFLDRLLVRDPAQRATAAELLKHPFLAK 275

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 39/226 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKI--VRSINKYREAAMI--EIDVLQRLARHD 149
              +  +G GTFG+V    D   +   A+K+  +  + + ++   +  E  VL+ ++   
Sbjct: 3   LERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPF 62

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I            D +  + ++ E + G  L+ +LR  +   F          +++ ++ 
Sbjct: 63  IIRLFW----TEHD-QRFLYMLMEYVPGGELFSYLR--NSGRFSNSTGLFYASEIVCALE 115

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H   +++ DLKPENILL    ++K+ D+ F                  A KL D   T
Sbjct: 116 YLHSKEIVYRDLKPENILLDKEGHIKLTDFGF------------------AKKLRDRTWT 157

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                    +  T  Y APEVI   G N   D W++G ++ E+  G
Sbjct: 158 ---------LCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVG 194

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 62.9 bits (153), Expect = 6e-11
 Identities = 77/344 (22%), Positives = 135/344 (39%), Gaps = 97/344 (28%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV-----RSINKYREAAMIEIDVLQRLAR 147
            +  L ++G G+FG V    D    E+VAIK +     +S  K+++  + E+  LQ+L R
Sbjct: 16  LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDI-IKEVRFLQQL-R 73

Query: 148 HDIGGTRCVQIRNWFDYRNHIC-IVFEKLGPSLYDFL--RKNSYRSFPIDLVRELGRQLL 204
           H       ++ +  +  R H   +V E    S  D L   K   +   I  +       L
Sbjct: 74  H----PNTIEYKGCY-LREHTAWLVMEYCLGSASDILEVHKKPLQEVEIAAICH---GAL 125

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           + +A++H    IH D+K  NILL                 ++ G+          +KL D
Sbjct: 126 QGLAYLHSHERIHRDIKAGNILL-----------------TEPGT----------VKLAD 158

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLG---WNYPCDLWSVGCILVELCSGEALFQTH 321
           FGS +     +S+ V T ++ APEVIL +    ++   D+WS+G   +EL          
Sbjct: 159 FGSASLVSPANSF-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL---------- 207

Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
                                  A+R+    F             + ++M A++ + +  
Sbjct: 208 -----------------------AERKP-PLF-------------NMNAMSALYHIAQND 230

Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
           +  +   D S     + +   L+  P +R  + E L+H F  R+
Sbjct: 231 SPTLSSNDWSD-YFRNFVDSCLQKIPQDRPSSEELLKHRFVLRE 273

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 63.1 bits (153), Expect = 7e-11
 Identities = 68/261 (26%), Positives = 116/261 (44%), Gaps = 43/261 (16%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI----GG 152
           +  +G G FG+V      + K L A+K +R     ++  ++   V    A  DI      
Sbjct: 6   IKTLGIGAFGEVCLARKVDTKALYAMKTLR-----KKDVLLRNQVAHVKAERDILAEADN 60

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F  ++++  V + + G  +   L +     FP DL R    +L  +V  +H
Sbjct: 61  EWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGI--FPEDLARFYIAELTCAVESVH 118

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLS--RSSKDGSYFK--NLPKSSAIKLIDFGS 267
           ++  IH D+KP+NIL+    ++K+ D+   +  R + D  Y++  +  +  ++   DF +
Sbjct: 119 KMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSM---DFSN 175

Query: 268 --------------------TTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSV 304
                                  +HQ    HS +V T +Y APEV+L  G+   CD WSV
Sbjct: 176 EWGDPANCRCGDRLKPLERRAARQHQRCLAHS-LVGTPNYIAPEVLLRTGYTQLCDWWSV 234

Query: 305 GCILVELCSGEALFQTHENLE 325
           G IL E+  G+  F     LE
Sbjct: 235 GVILYEMLVGQPPFLAQTPLE 255

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 62.4 bits (151), Expect = 7e-11
 Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 35/241 (14%)

Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+GEG+ G V    +    + VA+K +    + R   +    V+ R   H+      V +
Sbjct: 29  KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHE----NVVDM 84

Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
            N +   + + +V E L G +L D +         I  V      +L +++++H   +IH
Sbjct: 85  YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATV---CLSVLRALSYLHNQGVIH 141

Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            D+K ++ILL S   +K+ D+ F ++ SK+      +PK  ++                 
Sbjct: 142 RDIKSDSILLTSDGRIKLSDFGFCAQVSKE------VPKRKSL----------------- 178

Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
            V T ++ APEVI  L +    D+WS+G +++E+  GE     + N   L  M R+   L
Sbjct: 179 -VGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEP---PYFNEPPLQAMRRIRDNL 234

Query: 338 P 338
           P
Sbjct: 235 P 235

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 62.1 bits (151), Expect = 9e-11
 Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 46/229 (20%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA-RHDIGGTRC 155
           LS++GEG  G V +C       + A+K + +         ++  +L+ L           
Sbjct: 6   LSRLGEGAGGSVTKCRLKNTGMIFALKTITT----DPNPDLQKQILRELEINKSCKSPYI 61

Query: 156 VQIRNWF--DYRNHICIVFEKLG----PSLYDFLRKNSYRSFPIDLVRELGR---QLLES 206
           V+    F  +  + I I  E        S+Y  ++K   R       + LG+    +L+ 
Sbjct: 62  VKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGE----KVLGKIAESVLKG 117

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           ++++H  ++IH D+KP NILL                 ++ G           +KL DFG
Sbjct: 118 LSYLHSRKIIHRDIKPSNILL-----------------TRKG----------QVKLCDFG 150

Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
            S    +        T  Y APE I G  ++   D+WS+G  L+E+   
Sbjct: 151 VSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQN 199

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 61.9 bits (150), Expect = 9e-11
 Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 58/242 (23%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + ++  +G GT+GQV +    +  +L AIK++       E   +EI++L++ + H     
Sbjct: 18  FELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHH----- 72

Query: 154 RCVQIRNWFDY------------RNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELG 200
                RN   Y             + + +V E  G  S+ D ++     +   D +  + 
Sbjct: 73  -----RNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYIC 127

Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           R++L  +A +H  ++IH D+K +N+LL                            +++ +
Sbjct: 128 REILRGLAHLHAHKVIHRDIKGQNVLLT---------------------------ENAEV 160

Query: 261 KLIDFG-STTFEHQ--DHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELC 312
           KL+DFG S   +      +  + T ++ APEVI         ++Y  D+WS+G   +E+ 
Sbjct: 161 KLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMA 220

Query: 313 SG 314
            G
Sbjct: 221 EG 222

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 69/336 (20%), Positives = 122/336 (36%), Gaps = 96/336 (28%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS--INKYR--EAAMIEIDVLQRLARHDIGGTRC 155
           +G+G+FG+V+        EL A+K+++   I +    E  M E  VL    +H       
Sbjct: 3   LGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPF----L 58

Query: 156 VQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            Q+ + F  ++ +  V E +  G  ++   R      F     R    +++  + F+HE 
Sbjct: 59  TQLHSCFQTKDRLFFVMEYVNGGDLMFHIQR---SGRFDEPRARFYAAEIVLGLQFLHER 115

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
            +I+ DLK +N+LL S  ++K+ D+       K+G              I  G TT    
Sbjct: 116 GIIYRDLKLDNVLLDSEGHIKIADFGM----CKEG--------------ILGGVTT---- 153

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLEHLAMME 331
             S    T  Y APE++    +    D W++G +L E+ +G++ F     + L    + +
Sbjct: 154 --STFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILED 211

Query: 332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS 391
            V    P  +   A                                              
Sbjct: 212 EVR--YPRWLSKEA---------------------------------------------- 223

Query: 392 AGDLIDLLQGLLRYDPAERLKA-----REALRHPFF 422
                 +L+  L  +P +RL       ++   HPFF
Sbjct: 224 ----KSILKSFLTKNPEKRLGCLPTGEQDIKGHPFF 255

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 43/226 (19%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQR----LARHDIGG 152
           L K+G+G+FG+V +  DN  +++VAIKI+       E A  EI+ +Q+    L++ D   
Sbjct: 9   LEKIGKGSFGEVFKGIDNRTQKVVAIKIID-----LEEAEDEIEDIQQEITVLSQCD--S 61

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID--LVRELGRQLLESVAF 209
               +    +     + I+ E L G S  D L        P+D   +  + R++L+ + +
Sbjct: 62  PYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLDY 116

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H  + IH D+K  N+LL     VK+ D+                           G  T
Sbjct: 117 LHSEKKIHRDIKAANVLLSEHGEVKLADFGVA------------------------GQLT 152

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
                 +  V T  + APEVI    ++   D+WS+G   +EL  GE
Sbjct: 153 DTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGE 198

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 21/148 (14%)

Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS--RSSKDG 248
           F  DL R    +L  ++  +H++  IH D+KP+NIL+    ++K+ D+   +  R + D 
Sbjct: 98  FEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS 157

Query: 249 SYFK--NLPKSSAIKLIDFGS-------TTFE------HQD---HSYVVSTRHYRAPEVI 290
            Y++  +  +  +++  +  S          E      HQ    HS +V T +Y APEV+
Sbjct: 158 KYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHS-LVGTPNYIAPEVL 216

Query: 291 LGLGWNYPCDLWSVGCILVELCSGEALF 318
           L  G+   CD WSVG IL E+  G+  F
Sbjct: 217 LRTGYTQLCDWWSVGVILYEMLVGQPPF 244

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 74/353 (20%), Positives = 136/353 (38%), Gaps = 85/353 (24%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSI---NKYREAAMIEIDVLQRLAR 147
            ++ +  +G+G  G+V         +L A+K++  + +   NK +     E ++L  L  
Sbjct: 2   HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVL-TEQEILATL-D 59

Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           H         +   F    ++C+V +   G  L+  L++   +    ++ R    ++L +
Sbjct: 60  HPF----LPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLA 115

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDY----------KFLSRSSKDGSYFKNLPK 256
           + ++H L +++ DLKPENILL  + ++ + D+            +S++ + GS   ++  
Sbjct: 116 LEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNS 175

Query: 257 SS---AIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                  +   F S +F        V T  Y APEVI G G     D W++G +L E+  
Sbjct: 176 IPSETFSEEPSFRSNSF--------VGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLY 227

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G   F                         +   R E +                     
Sbjct: 228 GTTPF-------------------------KGSNRDETFSN------------------- 243

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL----KAREALRHPFF 422
              +L+           S+    DL++ LL  DP++RL     A E  +HPFF
Sbjct: 244 ---ILKKEVTFPGSPPVSS-SARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFF 292

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 79/338 (23%), Positives = 128/338 (37%), Gaps = 99/338 (29%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEID--VLQRLARHDIGGTRCVQ 157
           +G+G+FG+V++     K++   I  +++I K    +  E+   + +R     +     V 
Sbjct: 1   IGKGSFGKVMQV---RKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVP 57

Query: 158 IRNWFDYRNHICIVFEKL-GPSLYDFLRK----NSYRSFPIDLVRELGRQLLESVAFMHE 212
           ++  F     + +V   + G  L+  L++    +  R+      R    +LL ++  +H+
Sbjct: 58  LKFSFQSPEKLYLVLAFINGGELFHHLQREGRFDLSRA------RFYTAELLCALENLHK 111

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
             +I+ DLKPENILL         DY                     I L DFG      
Sbjct: 112 FNVIYRDLKPENILL---------DY------------------QGHIALCDFGLCKLNM 144

Query: 273 QDHSYV---VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
           +D         T  Y APE++LG G+    D W++G +L E+ +G               
Sbjct: 145 KDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTG--------------- 189

Query: 330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD 389
                  LP       D    + +R                     K+L+ P       D
Sbjct: 190 -------LPPFY----DENVNEMYR---------------------KILQEPLRFPDGFD 217

Query: 390 HSAGDLIDLLQGLLRYDPAERL---KAREALRHPFFTR 424
             A    DLL GLL  DP  RL    A+E   HPFF++
Sbjct: 218 RDAK---DLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQ 252

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 61.2 bits (148), Expect = 3e-10
 Identities = 79/342 (23%), Positives = 131/342 (38%), Gaps = 69/342 (20%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + IL     G  G    C DN+  E V IK  +     R     E  +L+ +    I   
Sbjct: 94  FSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ-----RGGTATEAHILRAINHPSI--- 145

Query: 154 RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
             +Q++  F Y    C++  +    LY +L   + R+  I  +  + R +L ++ ++HE 
Sbjct: 146 --IQLKGTFTYNKFTCLILPRYKTDLYCYL--AAKRNIAICDILAIERSVLRAIQYLHEN 201

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE-- 271
           R+IH D+K ENI                         F N P    + L DFG+  F   
Sbjct: 202 RIIHRDIKAENI-------------------------FINHPGD--VCLGDFGAACFPVD 234

Query: 272 -HQDHSY-VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE-ALFQTH------E 322
            + +  Y    T    APE++    +    D+WS G +L E+ +   +LF+        +
Sbjct: 235 INANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCD 294

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD-SMRAVW-KLLRL 380
           +   + ++ R  G  P+   I A    ++ +   A+       +SR    R +W  L  L
Sbjct: 295 SDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAK------KSSRKPGSRPLWTNLYEL 348

Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           P            DL  L+  +L +D   R  A   L    F
Sbjct: 349 PI-----------DLEYLICKMLAFDAHHRPSAEALLDFAAF 379

Length = 391

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 60.7 bits (147), Expect = 4e-10
 Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 34/225 (15%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +G+GTFGQV +    + + + A+K++  + I   +E A    E ++L R    +      
Sbjct: 1   IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDE--SPFI 58

Query: 156 VQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           V ++  F   + + +V +   G  L+  L+K     F  D  +    +L+ ++  +H+  
Sbjct: 59  VGLKFSFQTDSDLYLVTDYMSGGELFWHLQKEG--RFSEDRAKFYIAELVLALEHLHKYD 116

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +++ DLKPENILL +  ++ + D+  LS++        NL  +         + TF    
Sbjct: 117 IVYRDLKPENILLDATGHIALCDFG-LSKA--------NLTDNKT-------TNTF---- 156

Query: 275 HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF 318
                 T  Y APEV+L   G+    D WS+G ++ E+C G + F
Sbjct: 157 ----CGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPF 197

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 39/251 (15%)

Query: 94  YRILSKMGEGTFGQV--VECFDNEKKELVAIKIVRSINKYREAAMI----EIDVLQRLAR 147
           +  +  +G+G FG+V  V+  D  K  + A+K +     +++  +     E DVL   A 
Sbjct: 3   FHTVKVIGKGAFGEVRLVQKKDTGK--IYAMKTLLKSEMFKKDQLAHVKAERDVL---AE 57

Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
            D      V +   F    ++ ++ E L G  L   L K  Y +F  D+ R    + + +
Sbjct: 58  SD--SPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIK--YDTFSEDVTRFYMAECVLA 113

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK--DGSYFKNLPKSSAIK--- 261
           +  +H+L  IH D+KP+NIL+    ++K+ D+   +   K  D +Y++ L +  + K   
Sbjct: 114 IEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRI 173

Query: 262 ------LIDFGSTTFEHQDH-----------SY-VVSTRHYRAPEVILGLGWNYPCDLWS 303
                  +D  + T   +D            +Y  V T  Y APE+ L  G+   CD WS
Sbjct: 174 DNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWS 233

Query: 304 VGCILVELCSG 314
           +G I+ E   G
Sbjct: 234 LGAIMFECLIG 244

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 37/248 (14%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDI-- 150
           +  L  +G G FG+V      +   + A+KI+R      +A M+E + +  + A  DI  
Sbjct: 3   FESLKVIGRGAFGEVRLVQKKDTGHIYAMKILR------KADMLEKEQVAHIRAERDILV 56

Query: 151 --GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES- 206
              G   V++   F  + ++ ++ E L G  +   L K        D + E   Q   + 
Sbjct: 57  EADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK-------DTLSEEATQFYIAE 109

Query: 207 ----VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS--RSSKDGSYFKNLPKSSAI 260
               +  +H+L  IH D+KP+N+LL +  +VK+ D+   +  + +    +++NL  +   
Sbjct: 110 TVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPS 169

Query: 261 KLIDFGSTTFEHQDHSY----------VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
               F +   + +  ++           V T  Y APEV +  G+N  CD WS+G I+ E
Sbjct: 170 DF-SFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYE 228

Query: 311 LCSGEALF 318
           +  G   F
Sbjct: 229 MLIGYPPF 236

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 59.3 bits (143), Expect = 7e-10
 Identities = 51/232 (21%), Positives = 106/232 (45%), Gaps = 38/232 (16%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH-DIGG 152
           + ++  +G GT+GQV +    +  +L AIK++       E    EI++L++ + H +I  
Sbjct: 8   FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIAT 67

Query: 153 TRCVQIR-NWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                I+ N     + + +V E  G  S+ D ++     +   + +  + R++L  ++ +
Sbjct: 68  YYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHL 127

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H+ ++IH D+K +N+LL                            +++ +KL+DFG +  
Sbjct: 128 HQHKVIHRDIKGQNVLLT---------------------------ENAEVKLVDFGVSAQ 160

Query: 271 EHQD---HSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSG 314
             +     +  + T ++ APEVI         +++  DLWS+G   +E+  G
Sbjct: 161 LDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEG 212

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 62/240 (25%), Positives = 104/240 (43%), Gaps = 32/240 (13%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ K+G G FG+V     N   + VA+K ++      E+ + E  ++++L RHD    +
Sbjct: 9   QLIKKLGNGQFGEVWMGTWNGNTK-VAVKTLKPGTMSPESFLEEAQIMKKL-RHD----K 62

Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    R+  +  + ++  Q+   +A++  +
Sbjct: 63  LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM 121

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D  Y         IK            
Sbjct: 122 NYIHRDLRSANILVGDGLVCKIADFG-LARLIEDNEYTARQGAKFPIK------------ 168

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 169 ----------WTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVER 218

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 38/245 (15%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS---IN-KYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G+FG+V+        +  A+K+++    +N K ++  M E +VL +  +H       
Sbjct: 3   IGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPF----L 58

Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           V +   F     +  V + + G  L+  L++   RSFP    R    ++  ++ ++H + 
Sbjct: 59  VGLHYSFQTTEKLYFVLDFVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSIN 116

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +++ DLKPENILL S  +V + D+       K+G           I   D  +TTF    
Sbjct: 117 IVYRDLKPENILLDSQGHVVLTDFGL----CKEG-----------IAQSD-TTTTF---- 156

Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF---QTHENLEHLAMME 331
                 T  Y APEVI    ++   D W +G +L E+  G   F      E  +++    
Sbjct: 157 ----CGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKP 212

Query: 332 RVLGP 336
            VL P
Sbjct: 213 LVLRP 217

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 70/282 (24%), Positives = 116/282 (41%), Gaps = 70/282 (24%)

Query: 97  LSKMGEGTFGQVV---ECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDI 150
           L  +G+G+FG+V    +    +  +L A+K+++      + R    +E D+L        
Sbjct: 1   LKVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDIL-------- 52

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLY---DFLRKNSYRSFPIDLVRELGRQLL--- 204
                 ++ + F  + H    F+  G  LY   DFLR         DL   L ++++   
Sbjct: 53  -----AEVNHPFIVKLHY--AFQTEG-KLYLILDFLRGG-------DLFTRLSKEVMFTE 97

Query: 205 ESVAF-----------MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
           E V F           +H L +I+ DLKPENILL    ++K+ D+  LS+ S D      
Sbjct: 98  EDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFG-LSKESIDH----- 151

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                            E + +S+   T  Y APEV+   G     D WS G ++ E+ +
Sbjct: 152 -----------------EKKAYSFC-GTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLT 193

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
           G   FQ  +  E + M+ +    +P  +   A       F+R
Sbjct: 194 GSLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRALFKR 235

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 37/241 (15%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + I+  +G G FG+V        + + A+KI   +NK+      E     R  R+ +   
Sbjct: 3   FEIIKVIGRGAFGEVAVVKMKHTERIYAMKI---LNKWEMLKRAETACF-REERNVLVNG 58

Query: 154 RCVQIRNW---FDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
            C  I      F   N++ +V +  +G  L   L K   R  P D+ R    +++ ++  
Sbjct: 59  DCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDR-LPEDMARFYIAEMVLAIHS 117

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H+L  +H D+KP+N+LL    ++++ D+    + ++DG+                    
Sbjct: 118 IHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTV------------------- 158

Query: 270 FEHQDHSYVVSTRHYRAPEVIL----GLGWNYP-CDLWSVGCILVELCSGEALFQTHENL 324
                 S  V T  Y +PE++     G+G   P CD WS+G  + E+  GE  F     +
Sbjct: 159 ----QSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLV 214

Query: 325 E 325
           E
Sbjct: 215 E 215

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 25/152 (16%)

Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS--RSSKDG 248
           FP  L R    +L  ++  +H++  IH D+KP+NIL+    ++K+ D+   +  R + + 
Sbjct: 98  FPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNS 157

Query: 249 SYFK--NLPKSSAIKLIDF-----------------GSTTFEHQD---HSYVVSTRHYRA 286
            Y++  +  +  +++  D                     T +HQ    HS +V T +Y A
Sbjct: 158 KYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHS-LVGTPNYIA 216

Query: 287 PEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
           PEV+L  G+   CD WSVG IL E+  G+  F
Sbjct: 217 PEVLLRKGYTQLCDWWSVGVILFEMLVGQPPF 248

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 42/237 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + + S +G G FG+V    +    ++ A+K+++     +   + +  V       DI   
Sbjct: 3   FDVKSLVGRGHFGEVQVVREKATGDIYAMKVMK-----KSVLLAQETVSFFEEERDILSI 57

Query: 154 R----CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRS-FPIDLVRELGRQLLESV 207
                  Q++  F  ++++ +V E   G  L   L  N Y   F  D+ +    +L+ ++
Sbjct: 58  SNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLL--NRYEDQFDEDMAQFYLAELVLAI 115

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
             +H++  +H D+KPEN+L+    ++K+ D+   +R + +      LP            
Sbjct: 116 HSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLP------------ 163

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLG------WNYPCDLWSVGCILVELCSGEALF 318
                      V T  Y APEV+  +       +   CD WS+G I  E+  G + F
Sbjct: 164 -----------VGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPF 209

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 35/227 (15%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHDIGG 152
             +S +G G  G V +        ++A K+V   + +  R+  + E+ ++     H+   
Sbjct: 8   ETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIM-----HECRS 62

Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH- 211
              V     F   N+IC+  E +     D + K      P++++ ++   ++E + +++ 
Sbjct: 63  PYIVSFYGAFLNENNICMCMEFMDCGSLDRIYK-KGGPIPVEILGKIAVAVVEGLTYLYN 121

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
             R++H D+KP NIL+ S   +K+ D+                    + +LI+  + TF 
Sbjct: 122 VHRIMHRDIKPSNILVNSRGQIKLCDF------------------GVSGELINSIADTF- 162

Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
                  V T  Y +PE I G  +    D+WS+G  ++EL  G+  F
Sbjct: 163 -------VGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPF 202

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 36/221 (16%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           ++  K+G G FG+V     N   + VA+K ++      EA + E  ++++L RHD    +
Sbjct: 9   KLERKLGAGQFGEVWMGTWNGTTK-VAVKTLKPGTMSPEAFLQEAQIMKKL-RHD----K 62

Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+ E +A++   
Sbjct: 63  LVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR 122

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA---IKLIDFGSTTF 270
             IH DL   NIL+      K+ D+  L+R  +D  Y     +  A   IK         
Sbjct: 123 NYIHRDLAARNILVGENLVCKIADFG-LARLIEDDEY---TAREGAKFPIK--------- 169

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                        + APE      +    D+WS G +L E+
Sbjct: 170 -------------WTAPEAANYGRFTIKSDVWSFGILLTEI 197

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 53/270 (19%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G+FG+V+      K E  A+K ++     I+   E  M+E  VL     +       
Sbjct: 3   LGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPF----L 58

Query: 156 VQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRE--LGRQLLESVAFMH 211
             +   F  + H+  V E L  G  ++    K  +     DL R      +++  + F+H
Sbjct: 59  THLYCTFQTKEHLFFVMEFLNGGDLMFHIQDKGRF-----DLYRATFYAAEIVCGLQFLH 113

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG---ST 268
              +I+ DLK +N++L                  +DG           IK+ DFG     
Sbjct: 114 SKGIIYRDLKLDNVML-----------------DRDGH----------IKIADFGMCKEN 146

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
            F     S    T  Y APE++ GL + +  D WS G +L E+  G++ F   +  E   
Sbjct: 147 VFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDE--- 203

Query: 329 MMERVLGPLPHH---MVIRADRRAEKYFRR 355
           + E +    PH+   +   +    EK F R
Sbjct: 204 LFESIRVDTPHYPRWITKESKDILEKLFER 233

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 57.4 bits (138), Expect = 5e-09
 Identities = 62/248 (25%), Positives = 110/248 (44%), Gaps = 37/248 (14%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDI-- 150
           +  L  +G G FG+V      +   + A+KI+R      +A M+E + +  + A  DI  
Sbjct: 3   FESLKVIGRGAFGEVRLVQKKDTGHVYAMKILR------KADMLEKEQVGHIRAERDILV 56

Query: 151 --GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQL---- 203
                  V++   F  + ++ ++ E L G  +   L K        D + E   Q     
Sbjct: 57  EADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK-------DTLTEEETQFYIAE 109

Query: 204 -LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS--RSSKDGSYFKNLPKSSAI 260
            + ++  +H+L  IH D+KP+N+LL S  +VK+ D+   +  + +    +++NL  S   
Sbjct: 110 TVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPS 169

Query: 261 KLIDFGSTTFEHQDHSY----------VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
               F +   + +  ++           V T  Y APEV +  G+N  CD WS+G I+ E
Sbjct: 170 DFT-FQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYE 228

Query: 311 LCSGEALF 318
           +  G   F
Sbjct: 229 MLIGYPPF 236

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 37/222 (16%)

Query: 93  RYRILSKMGEGTFGQVVECF---DNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD 149
           +Y ILS +  G+ G+V  C    D ++K++    IV+++   +     EID+L+ ++   
Sbjct: 93  QYNILSSLTPGSEGEVFVCTKHGDEQRKKV----IVKAVTGGKTPGR-EIDILKTISHRA 147

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     + + + + +++ +C+V  K    L+ ++ ++     P++    + R+LLE++A+
Sbjct: 148 I-----INLIHAYRWKSTVCMVMPKYKCDLFTYVDRSG--PLPLEQAITIQRRLLEALAY 200

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H   +IH D+K ENI L   E   + D+                   +A KL    +  
Sbjct: 201 LHGRGIIHRDVKTENIFLDEPENAVLGDF------------------GAACKL---DAHP 239

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
              Q + +   T    +PE++    +    D+WS G +L E+
Sbjct: 240 DTPQCYGW-SGTLETNSPELLALDPYCAKTDIWSAGLVLFEM 280

Length = 392

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 63/289 (21%)

Query: 93  RY-RILSKMGEGTFGQV-VECFD---NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRL 145
           RY + +  +GEG FG+V + C+D   +   E+VA+K ++     +       EI++L+ L
Sbjct: 4   RYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTL 63

Query: 146 ARHDI---------GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLV 196
              +I          G + +Q+           + +  LG SL D+L K+      ++L 
Sbjct: 64  YHENIVKYKGCCSEQGGKGLQL----------IMEYVPLG-SLRDYLPKHK-----LNLA 107

Query: 197 REL--GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
           + L   +Q+ E +A++H    IH DL   N+LL +   VK+ D+  L+++  +G  +  +
Sbjct: 108 QLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFG-LAKAVPEGHEYYRV 166

Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
            +       D  S  F             + A E +    ++Y  D+WS G  L EL   
Sbjct: 167 RE-------DGDSPVF-------------WYAVECLKENKFSYASDVWSFGVTLYEL--- 203

Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPD 363
             L             E ++GP    M +    R  +   RG RL  P 
Sbjct: 204 --LTHCDSKQSPPKKFEEMIGPKQGQMTV---VRLIELLERGMRLPCPK 247

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 55.8 bits (134), Expect = 8e-09
 Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 34/241 (14%)

Query: 95  RILSKMGEGTFGQV-VECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           R+  K+G+G FG+V +  ++   K  VAIK ++      EA + E  ++++L RHD    
Sbjct: 9   RLDVKLGQGCFGEVWMGTWNGTTK--VAIKTLKPGTMMPEAFLQEAQIMKKL-RHD---- 61

Query: 154 RCVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
           + V +         I IV E +G  SL DFL++   +   +  + ++  Q+ + +A++  
Sbjct: 62  KLVPLYAVVS-EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIER 120

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
           +  IH DL+  NIL+      K+ D+  L+R  +D  Y         IK           
Sbjct: 121 MNYIHRDLRAANILVGDNLVCKIADFG-LARLIEDNEYTARQGAKFPIK----------- 168

Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMME 331
                      + APE  L   +    D+WS G +L EL + G   +    N E L  +E
Sbjct: 169 -----------WTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVE 217

Query: 332 R 332
           R
Sbjct: 218 R 218

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 41/243 (16%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI----EIDVLQRLARHD 149
           + IL  +G G FG+V         ++ A+KI+      + A       E DVL       
Sbjct: 3   FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVN----- 57

Query: 150 IGGTRCVQIRNW-FDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            G  + +   ++ F   N++ +V +  +G  L   L K   R  P D+ R    +++ ++
Sbjct: 58  -GDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDR-LPEDMARFYLAEMVIAI 115

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
             +H+L  +H D+KP+NIL+    ++++ D+                   S +KL++ G+
Sbjct: 116 DSVHQLHYVHRDIKPDNILMDMNGHIRLADF------------------GSCLKLMEDGT 157

Query: 268 TTFEHQDHSYVVSTRHYRAPEVIL----GLGWNYP-CDLWSVGCILVELCSGEALFQTHE 322
                   S  V T  Y +PE++     G G   P CD WS+G  + E+  GE  F    
Sbjct: 158 V-----QSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAES 212

Query: 323 NLE 325
            +E
Sbjct: 213 LVE 215

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 59/238 (24%), Positives = 95/238 (39%), Gaps = 60/238 (25%)

Query: 99  KMGEGTFGQVVECF---DNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHD---- 149
           K+GEG FG+V +      + K   VA+K ++     + R+  + E  V+++L  H     
Sbjct: 2   KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKL-GHPNVVR 60

Query: 150 -IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
            +G   C +          + +V E  + G  L D+LRK+    FP      L  + L S
Sbjct: 61  LLGV--CTE-------EEPLYLVLEYMEGG-DLLDYLRKSR-PVFPSPEKSTLSLKDLLS 109

Query: 207 VA--------FMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKS 257
            A        ++   + +H DL   N L+     VK+ D  F LSR   D  Y++   K 
Sbjct: 110 FAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISD--FGLSRDVYDDDYYR---KK 164

Query: 258 SAIKLIDFGSTTFEHQDHSYVVSTRHYR--APEVILGLGWNYPCDLWSVGCILVELCS 313
           +  KL                      R  APE +    +    D+WS G +L E+ +
Sbjct: 165 TGGKL--------------------PIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFT 202

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 50/231 (21%), Positives = 100/231 (43%), Gaps = 41/231 (17%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-------EAAMIEIDVLQRLARHDIGG 152
           +G+G FG+V         ++ A K    ++K R       + A++E ++L+++    I  
Sbjct: 1   LGKGGFGEVCAVQVKNTGKMYACK---KLDKKRLKKKSGEKMALLEKEILEKVNSPFI-- 55

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V +   F+ + H+C+V   + G  L   +     R   ++ V     Q+   +  +H
Sbjct: 56  ---VNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLH 112

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            + +++ D+KPEN+LL      ++ D                     A++L D  + T  
Sbjct: 113 SMDIVYRDMKPENVLLDDQGNCRLSDLGL------------------AVELKDGKTITQR 154

Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
                    T  Y APE++    ++YP D +++GC + E+ +G   F+ H+
Sbjct: 155 -------AGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHK 198

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 33/241 (13%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           ++L K+G G FG+V E   N     VA+K ++      +  + E  ++++L RH     +
Sbjct: 9   QLLRKLGAGQFGEVWEGLWNNTTP-VAVKTLKPGTMDPKDFLAEAQIMKKL-RH----PK 62

Query: 155 CVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            +Q+         I IV E  K G SL ++L+  + R+  +  + ++  Q+   +A++  
Sbjct: 63  LIQLYAVCTLEEPIYIVTELMKYG-SLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEA 121

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
              IH DL   N+L+      KV D+  L+R  K+  Y         IK           
Sbjct: 122 QNYIHRDLAARNVLVGENNICKVADFG-LARVIKEDIYEAREGAKFPIK----------- 169

Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMME 331
                      + APE  L   ++   D+WS G +L E+ + G   +    N E L  ++
Sbjct: 170 -----------WTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVD 218

Query: 332 R 332
           +
Sbjct: 219 Q 219

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 54/236 (22%), Positives = 98/236 (41%), Gaps = 39/236 (16%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAAMI--EIDVLQRLARHD 149
           + +L  +G+G FG+V      + K++ A+K +      +      +  E  +LQ L  H 
Sbjct: 2   FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQEL-NHP 60

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE-KLGPSL-YDFLRKNSYRSFPIDLVRELGRQLLESV 207
                 V +   F    ++ +V +  LG  L Y   +K     F  + V+    +++ ++
Sbjct: 61  F----LVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQK---VKFSEEQVKFWICEIVLAL 113

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++H   +IH D+KP+NILL    +V + D+              N+    A K+    +
Sbjct: 114 EYLHSKGIIHRDIKPDNILLDEQGHVHITDF--------------NI----ATKVTP-DT 154

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
            T           T  Y APEV+   G++   D WS+G    E   G+  ++ H  
Sbjct: 155 LTTS------TSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSR 204

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 32/240 (13%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 9   RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 62

Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 63  LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 121

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 122 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 168

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 169 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 218

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 51/240 (21%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + I+  +G+GT+G+V +  + +     A+KI+  I+   E    E ++L+ L+ H     
Sbjct: 20  WEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDH----P 75

Query: 154 RCVQIRNWF---DYRN--HICIVFEKL-GPSLYD----FLRKNSYRSFPIDLVRELGRQL 203
             V+    +   D +N   + +V E   G S+ D    FL++      PI  +  +  + 
Sbjct: 76  NVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPI--IAYILHEA 133

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L  +  +H  + IH D+K  NILL +                              +KL+
Sbjct: 134 LMGLQHLHVNKTIHRDVKGNNILLTT---------------------------EGGVKLV 166

Query: 264 DFGST---TFEHQDHSYVVSTRHYRAPEVI-----LGLGWNYPCDLWSVGCILVELCSGE 315
           DFG +   T      +  V T  + APEVI     L   ++  CD+WS+G   +EL  G+
Sbjct: 167 DFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGD 226

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 67/264 (25%), Positives = 106/264 (40%), Gaps = 57/264 (21%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
            L ++G GT GQV +    +   ++A+K + R+ NK  E   I +D+   L  HD     
Sbjct: 19  NLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKE-ENKRILMDLDVVLKSHD----- 72

Query: 155 C---VQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
           C   V+   +F   + + I  E +   L D L K      P D+   LG+  +  V  +H
Sbjct: 73  CPYIVKCYGYFITDSDVFICMELMSTCL-DKLLKRIQGPIPEDI---LGKMTVAIVKALH 128

Query: 212 ELR----LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            L+    +IH D+KP NILL                             S  +KL DFG 
Sbjct: 129 YLKEKHGVIHRDVKPSNILL---------------------------DASGNVKLCDFGI 161

Query: 268 TTF--EHQDHSYVVSTRHYRAPEVI----LGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +    + +  +       Y APE I        ++   D+WS+G  LVEL +G+  F   
Sbjct: 162 SGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQ--FPYK 219

Query: 322 ENLEHLAMMERVLGP----LPHHM 341
                  ++ ++L      LP + 
Sbjct: 220 NCKTEFEVLTKILQEEPPSLPPNE 243

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 17/158 (10%)

Query: 99  KMGEGTFGQVVEC-FDNEKKEL--VAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGT 153
           K+G+G+FG V    +     ++  VA+K ++S       +  + E  ++  L   ++   
Sbjct: 2   KLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENL--- 58

Query: 154 RCVQIRNWFDYRNH-ICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               IR +     H + +V E L P  SL D LRK++   F I  + +   Q+   + ++
Sbjct: 59  ----IRLYGVVLTHPLMMVTE-LAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYL 113

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
              R IH DL   NILL S + VK+ D+  L R+    
Sbjct: 114 ESKRFIHRDLAARNILLASDDKVKIGDFG-LMRALPQN 150

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 37/232 (15%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G+FG+V         +  AIK ++     ++   E  M+E  VL     H       
Sbjct: 3   LGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPF----L 58

Query: 156 VQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE--LGRQLLESVAFMHEL 213
             +   F  + ++  V E L      F  ++ ++    DL R      +++  + F+H  
Sbjct: 59  THLYCTFQTKENLFFVMEYLNGGDLMFHIQSCHK---FDLPRATFYAAEIICGLQFLHSK 115

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
            +++ DLK +NILL +  ++K+ D+     +                 L D  + TF   
Sbjct: 116 GIVYRDLKLDNILLDTDGHIKIADFGMCKEN----------------MLGDAKTCTF--- 156

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                  T  Y APE++LG  +N   D WS G +L E+  G++ F  H+  E
Sbjct: 157 -----CGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEE 203

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 56/251 (22%), Positives = 110/251 (43%), Gaps = 38/251 (15%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARH 148
           +YR+L   G+G FG+V  C      ++ A K +  + I K +  +M   E  +L+++   
Sbjct: 4   QYRVL---GKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSR 60

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            +     V +   ++ ++ +C+V   + G  L   +       F          ++   +
Sbjct: 61  FV-----VSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGL 115

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
             +H+ R+++ DLKPENILL    ++++ D               ++P+   IK    G 
Sbjct: 116 EDLHQERIVYRDLKPENILLDDHGHIRISDLGLAV----------HVPEGQTIK----GR 161

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                      V T  Y APEV+    + +  D W++GC+L E+ +G++ FQ  +     
Sbjct: 162 -----------VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKR 210

Query: 328 AMMERVLGPLP 338
             +ER++  + 
Sbjct: 211 EEVERLVKEVQ 221

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 44/245 (17%)

Query: 99  KMGEGTFGQVVECFDNEKK--ELVAIKIVRSINK---YREAAMIEIDVLQRLARHDIGGT 153
           ++G G FG V +     KK  + VA+KI+++ N     ++  + E +V+Q+L    I   
Sbjct: 2   ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYI--V 59

Query: 154 RCVQI---RNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           R + I    +W        +V E  +LGP L  FL+KN  +      + EL  Q+   + 
Sbjct: 60  RMIGICEAESWM-------LVMELAELGP-LNKFLQKN--KHVTEKNITELVHQVSMGMK 109

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++ E   +H DL   N+LLV+  Y K+ D+        D +Y+K                
Sbjct: 110 YLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKA--------------- 154

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHL 327
               + H        + APE +    ++   D+WS G ++ E  S G+  ++  +  E  
Sbjct: 155 ----KTHGK--WPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVT 208

Query: 328 AMMER 332
            M+E 
Sbjct: 209 QMIES 213

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 47/248 (18%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-------EAAMIEIDVLQRLARHDIGG 152
           +G+G FG+V  C      +L A K    +NK R       E AM+E  +L ++    I  
Sbjct: 1   LGKGGFGEVSACQMRATGKLYACK---KLNKKRLKKRKGYEGAMVEKRILAKVHSRFI-- 55

Query: 153 TRCVQIRNWFDYRNHICIVFE-----KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
              V +   F  +  +C+V        L   +Y+   +N    FP         Q++  +
Sbjct: 56  ---VSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENP--GFPEPRACFYTAQIISGL 110

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
             +H+ R+I+ DLKPEN+LL +   V++ D                     A++L D  S
Sbjct: 111 EHLHQRRIIYRDLKPENVLLDNDGNVRISDLGL------------------AVELKDGQS 152

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH-ENLEH 326
            T  +        T  + APE++ G  +++  D +++G  L E+ +    F+   E +E+
Sbjct: 153 KTKGY------AGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN 206

Query: 327 LAMMERVL 334
             + +R+L
Sbjct: 207 KELKQRIL 214

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 43/223 (19%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV-----RSINKYREAAMIEIDVLQRLARHDIG 151
           L ++G G+FG V    D    E+VAIK +     +S  K+++  + E+  LQR+   +  
Sbjct: 30  LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDI-IKEVKFLQRIKHPN-- 86

Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               ++ +  +   +   +V E    S  D L  +      +++   +    L+ +A++H
Sbjct: 87  ---SIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIA-AITHGALQGLAYLH 142

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
              +IH D+K  NILL                            +   +KL DFGS +  
Sbjct: 143 SHNMIHRDIKAGNILLT---------------------------EPGQVKLADFGSASIA 175

Query: 272 HQDHSYVVSTRHYRAPEVILGLG---WNYPCDLWSVGCILVEL 311
              +S+ V T ++ APEVIL +    ++   D+WS+G   +EL
Sbjct: 176 SPANSF-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 217

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 60/252 (23%)

Query: 93  RYRILSKMGEGTFGQVVECF------DNEKKELVAI------KIVRSINKY-----REAA 135
            +R++  +  G FG++  C       + E +  V        K  R I K      R A 
Sbjct: 149 HFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAI 208

Query: 136 MIE--IDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNS--YRSF 191
            +E  I  L RL   +I     ++I        +  ++ +K    LY F+   +  ++  
Sbjct: 209 QLENEILALGRLNHENI-----LKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDR 263

Query: 192 P-IDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
           P +   R + +QLL +V ++H+ +LIH D+K ENI L                 + DG  
Sbjct: 264 PLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFL-----------------NCDGK- 305

Query: 251 FKNLPKSSAIKLIDFGS-TTFEHQ----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
                    I L DFG+   FE +    D+ +V  T    +PE++ G G+    D+WS G
Sbjct: 306 ---------IVLGDFGTAMPFEKEREAFDYGWV-GTVATNSPEILAGDGYCEITDIWSCG 355

Query: 306 CILVELCSGEAL 317
            IL+++ S +  
Sbjct: 356 LILLDMLSHDFC 367

Length = 501

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 62/255 (24%)

Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI 150
           T  + I+  +G+GT+G+V +  + +   L A+KI+  I+   E    E ++LQ L  H  
Sbjct: 21  TDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNH-- 78

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL---GRQLLESV 207
                V+    F Y+    +     G  L+  L   +  S   +LV+ L   G++L E++
Sbjct: 79  --PNVVKFYGMF-YKADKLV-----GGQLWLVLELCNGGSV-TELVKGLLICGQRLDEAM 129

Query: 208 ------------AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLP 255
                         +H  R+IH D+K  NILL +                          
Sbjct: 130 ISYILYGALLGLQHLHNNRIIHRDVKGNNILLTT-------------------------- 163

Query: 256 KSSAIKLIDFGST---TFEHQDHSYVVSTRHYRAPEVI-----LGLGWNYPCDLWSVGCI 307
               +KL+DFG +   T      +  V T  + APEVI         ++  CD+WS+G  
Sbjct: 164 -EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGIT 222

Query: 308 LVELCSGE-ALFQTH 321
            +EL  G+  LF  H
Sbjct: 223 AIELGDGDPPLFDMH 237

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 57/222 (25%), Positives = 96/222 (43%), Gaps = 41/222 (18%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV----RSINKYREAAMIEIDVLQRLARHDIGG 152
           L ++G G+FG V    D    E+VAIK +    +  N+  +  + E+  LQ+L RH    
Sbjct: 20  LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL-RH---- 74

Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
              +Q R  +   +   +V E    S  D L  +      +++   +    L+ +A++H 
Sbjct: 75  PNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIA-AVTHGALQGLAYLHS 133

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
             +IH D+K  NILL                            +   +KL DFGS +   
Sbjct: 134 HNMIHRDVKAGNILLS---------------------------EPGLVKLGDFGSASIMA 166

Query: 273 QDHSYVVSTRHYRAPEVILGLG---WNYPCDLWSVGCILVEL 311
             + + V T ++ APEVIL +    ++   D+WS+G   +EL
Sbjct: 167 PANXF-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 207

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 58/250 (23%), Positives = 109/250 (43%), Gaps = 33/250 (13%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIK---IVRSINKYREAAMIEIDVLQRLARHDI 150
           Y  +  +G+G++G+V         +   IK   +  +  + R+AA  E  +L +L   +I
Sbjct: 2   YCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNI 61

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
              R     +W      + IV     G  LY  L++   +  P + V E   Q+  ++ +
Sbjct: 62  VAYR----ESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQY 117

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +HE  ++H DLK +N+ L     +KV D   ++R  ++                D  ST 
Sbjct: 118 LHEKHILHRDLKTQNVFLTRTNIIKVGDLG-IARVLENQC--------------DMAST- 161

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE-NLEHLA 328
                   ++ T +Y +PE+     +NY  D+W++GC + E+ + +  F   + N     
Sbjct: 162 --------LIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYR 213

Query: 329 MMERVLGPLP 338
           ++E  L P+P
Sbjct: 214 IIEGKLPPMP 223

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 34/245 (13%)

Query: 92  PR--YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD 149
           PR   +++ K+G G FG+V   + N   + VAIK ++  +   EA + E +++++L +H 
Sbjct: 4   PRETLKLVKKLGAGQFGEVWMGYYNGHTK-VAIKSLKQGSMSPEAFLAEANLMKQL-QHP 61

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
               R V++      +  I I+ E +   SL DFL+        I+ + ++  Q+ E +A
Sbjct: 62  ----RLVRL-YAVVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMA 116

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           F+     IH DL+  NIL+      K+ D+  L+R  +D  Y         IK       
Sbjct: 117 FIERKNYIHRDLRAANILVSETLCCKIADFG-LARLIEDNEYTAREGAKFPIK------- 168

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHL 327
                          + APE I    +    D+WS G +L E+ + G   +    N E +
Sbjct: 169 ---------------WTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVI 213

Query: 328 AMMER 332
             +ER
Sbjct: 214 QNLER 218

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 42/234 (17%)

Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G FG V   +  EK++ VAIK +R      E  + E  V+ +L+       + VQ+
Sbjct: 11  EIGSGQFGLVWLGYWLEKRK-VAIKTIREGAMSEEDFIEEAQVMMKLSH-----PKLVQL 64

Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
                 R+ IC+VFE +    L D+LR      F  + +  +   + E +A++    +IH
Sbjct: 65  YGVCTERSPICLVFEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESSNVIH 123

Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            DL   N L                           + ++  +K+ DFG T F   D  Y
Sbjct: 124 RDLAARNCL---------------------------VGENQVVKVSDFGMTRFVLDDQ-Y 155

Query: 278 VVSTR-----HYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE 325
             ST       + +PEV     ++   D+WS G ++ E+ S G+  ++   N E
Sbjct: 156 TSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSE 209

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 62/282 (21%), Positives = 106/282 (37%), Gaps = 84/282 (29%)

Query: 166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPE 223
             I I  E + G SL   L+K      P +++ ++   +L  + ++ E  +++H D+KP 
Sbjct: 72  GEISICMEHMDGGSLDQVLKK--AGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPS 129

Query: 224 NILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRH 283
           NIL+ S   +K+ D+                    + +LID  + +F        V TR 
Sbjct: 130 NILVNSRGEIKLCDF------------------GVSGQLIDSMANSF--------VGTRS 163

Query: 284 YRAPEVILGLGWNYPCDLWSVGCILVELCSG------------EALFQTHENLEHLAMME 331
           Y +PE + G  +    D+WS+G  LVE+  G            EA+F    +        
Sbjct: 164 YMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESH 223

Query: 332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL---------RLPN 382
           R +   P                            S   M A+++LL         +LP+
Sbjct: 224 RPVSGHPP--------------------------DSPRPM-AIFELLDYIVNEPPPKLPS 256

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                    + +  D +   L+ +P ER   +E  +HPF  R
Sbjct: 257 ------GAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKR 292

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 39/226 (17%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G+FG+V+        E  AIK ++      +   E  M+E  VL     H       
Sbjct: 3   LGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPF----L 58

Query: 156 VQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +   F  + H+  V E L      F  ++S R F     R    +++  + F+H+  +
Sbjct: 59  THLFCTFQTKEHLFFVMEYLNGGDLMFHIQSSGR-FDEARARFYAAEIICGLQFLHKKGI 117

Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE---H 272
           I+ DLK +N+LL                  KDG           IK+ DFG         
Sbjct: 118 IYRDLKLDNVLL-----------------DKDGH----------IKIADFGMCKENMNGE 150

Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
              S    T  Y APE++ G  +N   D WS G +L E+  G++ F
Sbjct: 151 GKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPF 196

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 53/249 (21%), Positives = 86/249 (34%), Gaps = 78/249 (31%)

Query: 176 GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV 235
              L+D L+K          V+++ RQL+E++  +H+  +IH D+K EN+L         
Sbjct: 93  DGDLFDLLKKE--GKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVL--------- 141

Query: 236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGW 295
                         Y +   +   I L D+G          Y   T  Y +PE I G  +
Sbjct: 142 --------------YDRAKDR---IYLCDYGLCKIIGTPSCY-DGTLDYFSPEKIKGHNY 183

Query: 296 NYPCDLWSVGCILVELCSGEALFQTHENLE-HLAMMERVLGPLPHHMVIRADRRAEKYFR 354
           +   D W+VG +  EL +G+  F+  E+ E  L  + +                      
Sbjct: 184 DVSFDWWAVGVLTYELLTGKHPFKEDEDEELDLESLLK---------------------- 221

Query: 355 RGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL-KA 413
              R           S  A                       D +Q +L+Y+   RL   
Sbjct: 222 ---RQQKKLPFIKNVSKNAN----------------------DFVQSMLKYNINYRLTNY 256

Query: 414 REALRHPFF 422
            E ++HPF 
Sbjct: 257 NEIIKHPFL 265

Length = 267

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 35/231 (15%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAA--MIEIDVLQRLARHDIGGTRC 155
           +G+G+FG+V+      +++  A+K++  ++I K +E    M E +VL +  +H       
Sbjct: 3   IGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPF----L 58

Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           V +   F   + +  V + + G  L+  L++   R F     R    ++  ++ ++H L 
Sbjct: 59  VGLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLN 116

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +++ DLKPENILL S  ++ + D+     +                  I+   TT     
Sbjct: 117 IVYRDLKPENILLDSQGHIVLTDFGLCKEN------------------IEHNGTT----- 153

Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
            S    T  Y APEV+    ++   D W +G +L E+  G   F +    E
Sbjct: 154 -STFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE 203

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 32/236 (13%)

Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G FG+V     N K   VA+K ++  +   EA + E +V++ L +HD    + V++
Sbjct: 13  KLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTL-QHD----KLVKL 66

Query: 159 RNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
            +    +  I I+ E +   SL DFL+ +     P+  + +   Q+ E +AF+ +   IH
Sbjct: 67  -HAVVTKEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIH 125

Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            DL+  NIL+ ++   K+ D+  L+R  +D  Y         IK                
Sbjct: 126 RDLRAANILVSASLVCKIADFG-LARVIEDNEYTAREGAKFPIK---------------- 168

Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                 + APE I    +    D+WS G +L+E+ + G   +    N E +  +ER
Sbjct: 169 ------WTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALER 218

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 62/268 (23%), Positives = 109/268 (40%), Gaps = 73/268 (27%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA--MIEIDVLQRLARHDIGGTR 154
           L ++G G FG V +        ++A+K +RS    +E    ++++DV+ R        + 
Sbjct: 9   LGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMR-------SSD 61

Query: 155 CVQIRNWFDYRNH-----IC-----IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
           C  I  ++          IC     I  +K    +Y+ L+       P ++   LG+  +
Sbjct: 62  CPYIVKFYGALFREGDCWICMELMDISLDKFYKYVYEVLKSV----IPEEI---LGKIAV 114

Query: 205 ESVAFMH----ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            +V  ++    EL++IH D+KP NILL                            ++  I
Sbjct: 115 ATVKALNYLKEELKIIHRDVKPSNILL---------------------------DRNGNI 147

Query: 261 KLIDFG------STTFEHQDHSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVEL 311
           KL DFG       +  + +D       R Y APE I      G++   D+WS+G  L E+
Sbjct: 148 KLCDFGISGQLVDSIAKTRD----AGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEV 203

Query: 312 CSGEALFQTHENL-EHLAMMERVLGPLP 338
            +G+  +    ++ + L  +  V G  P
Sbjct: 204 ATGKFPYPKWNSVFDQLTQV--VKGDPP 229

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 31/240 (12%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ K+G G FG+V   + N   + VA+K ++      +A + E ++++ L +HD    +
Sbjct: 9   KLVKKLGAGQFGEVWMGYYNNSTK-VAVKTLKPGTMSVQAFLEEANLMKTL-QHD----K 62

Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V++         I I+ E +   SL DFL+ +      +  + +   Q+ E +A++   
Sbjct: 63  LVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK 122

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  N+L+  +   K+ D+  L+R  +D  Y         IK            
Sbjct: 123 NYIHRDLRAANVLVSESLMCKIADFG-LARVIEDNEYTAREGAKFPIK------------ 169

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G+  +    N + ++ ++R
Sbjct: 170 ----------WTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQR 219

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 37/225 (16%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAAMIEID--VLQRLARHD--IGGT 153
           +G G++ +V+     + + + A+K+V+   +N   +   ++ +  V ++ + H   +G  
Sbjct: 3   IGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLH 62

Query: 154 RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            C Q  +    R    I +   G  ++   R+   R  P +  R    ++  ++ ++HE 
Sbjct: 63  SCFQTES----RLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHER 115

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
            +I+ DLK +N+LL S  ++K+ DY       K+G              +  G TT    
Sbjct: 116 GIIYRDLKLDNVLLDSEGHIKLTDYGM----CKEG--------------LRPGDTT---- 153

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
             S    T +Y APE++ G  + +  D W++G ++ E+ +G + F
Sbjct: 154 --STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 196

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 41/238 (17%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAA--MIEIDVLQRLARHDIGGTRC 155
           +G+G+FG+V+           A+K++  ++I K +E    M E +VL +  +H       
Sbjct: 3   IGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPF----L 58

Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           V +   F     +  V + + G  L+  L++   R F     R    ++  ++ ++H L 
Sbjct: 59  VGLHYSFQTAEKLYFVLDYVNGGELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSLN 116

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +I+ DLKPENILL S  +V + D+       K+G              ++   TT     
Sbjct: 117 IIYRDLKPENILLDSQGHVVLTDFGL----CKEG--------------VEPEETT----- 153

Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF------QTHENLEH 326
            S    T  Y APEV+    ++   D W +G +L E+  G   F      Q ++N+ H
Sbjct: 154 -STFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILH 210

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 83/345 (24%), Positives = 140/345 (40%), Gaps = 65/345 (18%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTR 154
           +S++G G  G V +        ++A K++    K   R   + E+ VL     H+     
Sbjct: 10  ISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVL-----HECNSPY 64

Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V     F     I I  E + G SL   L++   +  P +++ ++   +L  +A++ E 
Sbjct: 65  IVGFYGAFYSDGEISICMEHMDGGSLDQVLKEA--KRIPEEILGKVSIAVLRGLAYLREK 122

Query: 214 -RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
            +++H D+KP NIL+ S   +K+ D+                    + +LID  + +F  
Sbjct: 123 HQIMHRDVKPSNILVNSRGEIKLCDF------------------GVSGQLIDSMANSF-- 162

Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER 332
                 V TR Y +PE + G  ++   D+WS+G  LVEL  G       +  E  A+  R
Sbjct: 163 ------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGR 216

Query: 333 VL----GPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL---------R 379
            +       PH +  R         R   R     G  SR +M A+++LL         +
Sbjct: 217 PVVDGEEGEPHSISPRP--------RPPGRPVSGHGMDSRPAM-AIFELLDYIVNEPPPK 267

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           LPN +         D  + +   L  +PAER   +  + H F  R
Sbjct: 268 LPNGVF------TPDFQEFVNKCLIKNPAERADLKMLMNHTFIKR 306

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 39/235 (16%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + ++ ++G GT+G V +  +    EL AIK+++ +    + A+++ +++      D   +
Sbjct: 11  FELIQRIGSGTYGDVYKARNVNTGELAAIKVIK-LEPGEDFAVVQQEIIMM---KDCKHS 66

Query: 154 RCVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPID--LVRELGRQLLESVAFM 210
             V     +  R+ + I  E  G  SL D      + + P+    +  + R+ L+ + ++
Sbjct: 67  NIVAYFGSYLRRDKLWICMEFCGGGSLQDIY----HVTGPLSESQIAYVSRETLQGLYYL 122

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H    +H D+K  NILL    +VK+ D+   ++ +   +  K+                 
Sbjct: 123 HSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSF---------------- 166

Query: 271 EHQDHSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELCSGE-ALFQTH 321
                   + T ++ APEV       G+N  CD+W+VG   +EL   +  +F  H
Sbjct: 167 --------IGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLH 213

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 42/224 (18%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDIGG 152
           +    +G G  G V + +    + ++A+K++      + ++  M E+++L +     I  
Sbjct: 4   QYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYI-- 61

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              +     F   N I I  E + G SL      + YR  P  ++  +   +++ + ++ 
Sbjct: 62  ---IGFYGAFFVENRISICTEFMDGGSL------DVYRKIPEHVLGRIAVAVVKGLTYLW 112

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-STTF 270
            L+++H D+KP N+L+ +   V                           KL DFG ST  
Sbjct: 113 SLKILHRDVKPSNMLVNTRGQV---------------------------KLCDFGVSTQL 145

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
            +      V T  Y APE I G  +    D+WS+G   +EL  G
Sbjct: 146 VNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALG 189

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 41/222 (18%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV----RSINKYREAAMIEIDVLQRLARHDIGG 152
           L ++G G+FG V    ++   E+VA+K +    +  N+  +  + E+  LQ+L   +   
Sbjct: 26  LHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNT-- 83

Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
              ++ +  +   +   +V E    S  D L  +      +++   +    L+ +A++H 
Sbjct: 84  ---IEYKGCYLKEHTAWLVMEYCLGSASDLLEVHKKPLQEVEIA-AITHGALQGLAYLHS 139

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
             +IH D+K  NILL                            +   +KL DFGS +   
Sbjct: 140 HNMIHRDIKAGNILLT---------------------------EPGQVKLADFGSASKSS 172

Query: 273 QDHSYVVSTRHYRAPEVILGLG---WNYPCDLWSVGCILVEL 311
             +S+ V T ++ APEVIL +    ++   D+WS+G   +EL
Sbjct: 173 PANSF-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 213

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 52/244 (21%)

Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + + ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 7   KFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDN 66

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           I   + V    +   R ++ +V E L P  SL D+L+K+  R     L+     Q+ + +
Sbjct: 67  IVKYKGV---CYSAGRRNLRLVMEYL-PYGSLRDYLQKHRERLDHRKLL-LYASQICKGM 121

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++   R +H DL   NIL+ S   VK+                            DFG 
Sbjct: 122 EYLGSKRYVHRDLATRNILVESENRVKIG---------------------------DFGL 154

Query: 268 TTFEHQDHSYVV------STRHYRAPEVILGLGWNYPCDLWSVGCILVEL-------CSG 314
           T    QD  Y        S   + APE +    ++   D+WS G +L EL       CS 
Sbjct: 155 TKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSP 214

Query: 315 EALF 318
            A F
Sbjct: 215 PAEF 218

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 38/231 (16%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHD 149
           YR+L   G+G FG+V  C      ++ A K +  + I K +  AM   E  +L++     
Sbjct: 5   YRVL---GKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK----- 56

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           +     V +   ++ ++ +C+V   + G  L   +       F  +       ++   + 
Sbjct: 57  VNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLE 116

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +H  R+++ DLKPENILL    ++++ D   L+    +G   +                
Sbjct: 117 DLHRERIVYRDLKPENILLDDYGHIRISDLG-LAVEIPEGETIRGR-------------- 161

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                     V T  Y APEV+    + +  D W +GC++ E+  G++ F+
Sbjct: 162 ----------VGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFR 202

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 38/228 (16%)

Query: 92  PR--YRILSKMGEGTFGQVVE-CFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLAR 147
           PR  + +  K+G G FG+V E  + N  +  VAIKI++S +  ++     E+  L+RL R
Sbjct: 4   PREEFTLERKLGSGYFGEVWEGLWKNRVR--VAIKILKSDDLLKQQDFQKEVQALKRL-R 60

Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           H       + +         + I+ E +   SL  FLR    +  P+  + ++  Q+ E 
Sbjct: 61  HK----HLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEG 116

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYV-KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +A++ E   IH DL   NI LV  + V KV D+  L+R  K+  Y   L     I     
Sbjct: 117 MAYLEEQNSIHRDLAARNI-LVGEDLVCKVADFG-LARLIKEDVY---LSSDKKIPY--- 168

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                             + APE      ++   D+WS G +L E+ +
Sbjct: 169 -----------------KWTAPEAASHGTFSTKSDVWSFGILLYEMFT 199

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 46/221 (20%), Positives = 100/221 (45%), Gaps = 29/221 (13%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G++ +V+     +  ++ A+K+V+    + +  +  +   + +          V + 
Sbjct: 3   IGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLH 62

Query: 160 NWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
           + F   + + +V E +  G  ++   R+   R  P +  R    ++  ++ F+HE  +I+
Sbjct: 63  SCFQTTSRLFLVIEYVNGGDLMFHMQRQ---RKLPEEHARFYAAEICIALNFLHERGIIY 119

Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            DLK +N+LL +  ++K+ DY       K+G              +  G TT      S 
Sbjct: 120 RDLKLDNVLLDADGHIKLTDYGM----CKEG--------------LGPGDTT------ST 155

Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
              T +Y APE++ G  + +  D W++G ++ E+ +G + F
Sbjct: 156 FCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPF 196

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 64/260 (24%), Positives = 100/260 (38%), Gaps = 78/260 (30%)

Query: 100 MGEGTFGQVVECFDNEK--KEL-VAIKIVR--SINKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG VV+     K  KE+ VA+K ++   I   ++  + E  V+ +L         
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQL--------- 53

Query: 155 CVQIRNWFDYRNHICIV----------------FEKLGPSLYDFLRKNSYRSFPIDLVRE 198
                      +H CIV                   LGP L  +L+K   R  P+  ++E
Sbjct: 54  -----------DHPCIVRLIGVCKGEPLMLVMELAPLGP-LLKYLKKR--REIPVSDLKE 99

Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
           L  Q+   +A++     +H DL   N+LLV+    K+ D+  +SR+   GS         
Sbjct: 100 LAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFG-MSRALGAGS--------- 149

Query: 259 AIKLIDFGSTTFEHQDHSYVVSTRHYR------APEVILGLGWNYPCDLWSVGCILVELC 312
                             Y  +T   R      APE I    ++   D+WS G  L E  
Sbjct: 150 -----------------DYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAF 192

Query: 313 S-GEALFQTHENLEHLAMME 331
           S G   +   +  E +AM+E
Sbjct: 193 SYGAKPYGEMKGAEVIAMLE 212

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 54/268 (20%)

Query: 94  YRILSKMGEGTFGQVV---ECFDNEKKELVAIKIVRSIN-----KYREAAMIEIDVLQRL 145
           + +L  +G G +G+V    +   ++  +L A+K+++        K  E    E  VL+ +
Sbjct: 2   FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAV 61

Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
            R        V +   F     + ++ + + G  L+  L +  +  F    VR    +++
Sbjct: 62  RRCPF----LVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREH--FTESEVRVYIAEIV 115

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
            ++  +H+L +I+ D+K ENILL                   +G           + L D
Sbjct: 116 LALDHLHQLGIIYRDIKLENILL-----------------DSEGH----------VVLTD 148

Query: 265 FG-STTF----EHQDHSYVVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELCSGEAL 317
           FG S  F    E + +S+   T  Y APEVI G   G +   D WS+G +  EL +G + 
Sbjct: 149 FGLSKEFLAEEEERAYSF-CGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASP 207

Query: 318 FQTH-ENLEHLAMMERVLG---PLPHHM 341
           F    E      +  R+L    P P  M
Sbjct: 208 FTVDGEQNSQSEISRRILKSKPPFPKTM 235

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 36/231 (15%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRL--AR 147
           +R L+ +G G FG+V+     +  EL AIK ++          E+ M E  + +     R
Sbjct: 1   FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSER 60

Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           H       V +   F   +H+C V E    +  D +       F           ++  +
Sbjct: 61  HPF----LVNLFACFQTEDHVCFVMEYA--AGGDLMMHIHTDVFSEPRAVFYAACVVLGL 114

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++HE ++++ DLK +N+LL +  +VK+ D+       K+G              + FG 
Sbjct: 115 QYLHENKIVYRDLKLDNLLLDTEGFVKIADFGL----CKEG--------------MGFGD 156

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            T      S    T  + APEV+    +    D W +G ++ E+  GE+ F
Sbjct: 157 RT------STFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPF 201

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 48/234 (20%)

Query: 13  NMDKRPRKRPRLTWDVP---PPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTG 69
               RPR+RP LT  +P   P L  P  LP             P  + SS    +     
Sbjct: 19  TTKSRPRRRPDLTLPLPQRDPSLAVPLPLP-------------PPSSSSSSSSSSSASGS 65

Query: 70  SPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RS 127
           +P                 +L+   R+ +++G G  G V +        L A+K++    
Sbjct: 66  APSAAK-------------SLSELERV-NRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH 111

Query: 128 INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNS 187
            +  R     EI++L R   H       V+  + FD+   I ++ E        F+   S
Sbjct: 112 EDTVRRQICREIEIL-RDVNH----PNVVKCHDMFDHNGEIQVLLE--------FMDGGS 158

Query: 188 YRSFPIDLVREL---GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY 238
                I   + L    RQ+L  +A++H   ++H D+KP N+L+ SA+ VK+ D+
Sbjct: 159 LEGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADF 212

Length = 353

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 71/292 (24%), Positives = 120/292 (41%), Gaps = 56/292 (19%)

Query: 100 MGEGTFGQVVEC-FDNE---KKELVAIKIVRSINKYREAAMI--EIDVLQRLARHDIGGT 153
           +GEG FG+V  C +D E     E VA+K ++  +     A +  EI++L+ L   +I   
Sbjct: 12  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 71

Query: 154 R--CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL--GRQLLESVA 208
           +  C +     D  N I ++ E L   SL ++L +N  +   I+L ++L    Q+ + + 
Sbjct: 72  KGICTE-----DGGNGIKLIMEFLPSGSLKEYLPRNKNK---INLKQQLKYAVQICKGMD 123

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++   + +H DL   N+L+ S   VK+ D+        D  Y+        +K  D  S 
Sbjct: 124 YLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYY-------TVK-DDLDSP 175

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL---CSGEALFQTHENLE 325
            F             + APE ++   +    D+WS G  L EL   C  E+         
Sbjct: 176 VF-------------WYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSES--------S 214

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR--DSMRAVW 375
            + +  +++GP    M +    R  +    G RL  P          MR  W
Sbjct: 215 PMTLFLKMIGPTHGQMTV---TRLVRVLEEGKRLPRPPNCPEEVYQLMRKCW 263

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 53/226 (23%), Positives = 99/226 (43%), Gaps = 42/226 (18%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--EIDVLQRLARHDIG 151
           Y ++ ++G GT+G V +  +    EL A+KI++ +    + ++I  EI +++     +I 
Sbjct: 11  YELIQRVGSGTYGDVYKARNLHTGELAAVKIIK-LEPGDDFSLIQQEIFMVKECKHCNI- 68

Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPID--LVRELGRQLLESVA 208
               V     +  R  + I  E  G  SL D      + + P+    +  + R+ L+ +A
Sbjct: 69  ----VAYFGSYLSREKLWICMEYCGGGSLQDIY----HVTGPLSELQIAYVCRETLQGLA 120

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H    +H D+K  NILL     VK+ D+   ++ +   +  K+               
Sbjct: 121 YLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSF-------------- 166

Query: 269 TFEHQDHSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVEL 311
                     + T ++ APEV       G+N  CD+W+VG   +EL
Sbjct: 167 ----------IGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIEL 202

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 37/149 (24%)

Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDL--VRELGRQLLESVAFMHELRLIHTDLKPENIL 226
           C+V  K    LY +L     R  P+ L  V  + RQLL ++ ++H   +IH D+K EN+L
Sbjct: 236 CLVLPKYRSDLYTYL---GARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVL 292

Query: 227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY-----VVST 281
           +                         N P+   I L DFG+  F     S      +  T
Sbjct: 293 V-------------------------NGPED--ICLGDFGAACFARGSWSTPFHYGIAGT 325

Query: 282 RHYRAPEVILGLGWNYPCDLWSVGCILVE 310
               APEV+ G  +    D+WS G ++ E
Sbjct: 326 VDTNAPEVLAGDPYTPSVDIWSAGLVIFE 354

Length = 461

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 27/121 (22%)

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           +++ ++  +H +  IH D+KP+N+LL  + ++K+ D+    +   +G             
Sbjct: 150 EVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMV----------- 198

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEAL 317
                       D +  V T  Y +PEV+   G    +   CD WSVG  L E+  G+  
Sbjct: 199 ----------RCDTA--VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTP 246

Query: 318 F 318
           F
Sbjct: 247 F 247

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 38/232 (16%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARH 148
           +YR+L   G+G FG+V  C      ++ A K +  + I K +  +M   E  +L+++   
Sbjct: 4   QYRVL---GKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQ 60

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            +     V +   ++ ++ +C+V   + G  L   +       F  +       ++L  +
Sbjct: 61  FV-----VNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGL 115

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
             +H    ++ DLKPENILL    ++++ D     +          +P+  +I+    G 
Sbjct: 116 EDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVK----------IPEGESIR----GR 161

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                      V T  Y APEV+    +    D W +GC++ E+  G++ F+
Sbjct: 162 -----------VGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFR 202

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 25/114 (21%)

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H+  +I+ DLKPENILL +  +VK+ D+               L K S    I  G+ T
Sbjct: 116 LHQQGIIYRDLKPENILLDAQGHVKLTDF--------------GLCKES----IHEGTVT 157

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
                H++   T  Y APE+++  G     D WS+G ++ ++ +G   F T EN
Sbjct: 158 -----HTF-CGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPF-TAEN 204

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 60/245 (24%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHD 149
           YR+L   G+G FG+V  C      ++ A K +  + I K +  AM   E  +L++     
Sbjct: 5   YRVL---GKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEK----- 56

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE------------KLGPSLYDFLRKNSYRSFPIDLVR 197
           +     V +   ++ ++ +C+V               +G   +D  R   Y +       
Sbjct: 57  VNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAA------- 109

Query: 198 ELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKS 257
               +L   +  +   R+++ DLKPENILL    ++++ D     +          +P+ 
Sbjct: 110 ----ELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQ----------IPEG 155

Query: 258 SAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
             ++    G            V T  Y APEVI    + +  D W +GC++ E+  G++ 
Sbjct: 156 ETVR----GR-----------VGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSP 200

Query: 318 FQTHE 322
           F+  +
Sbjct: 201 FRKRK 205

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 45/238 (18%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-----EAAMI--EIDVLQRLA 146
           + IL  +G G FG+V         ++ A+KI   +NK+      E A    E DVL    
Sbjct: 3   FEILKVIGRGAFGEVAVVKMKNTGQVYAMKI---LNKWEMLKRAETACFREERDVLVNGD 59

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           R  I       +   F   N++ +V +  +G  L   L K   R  P D+ R    +++ 
Sbjct: 60  RRWI-----TNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDR-LPEDMARFYLAEMVL 113

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++  +H+L  +H D+KP+N+LL    ++++ D+                   S ++L+  
Sbjct: 114 AIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADF------------------GSCLRLLAD 155

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLG-----WNYPCDLWSVGCILVELCSGEALF 318
           G+        +  V T  Y +PE++  +      +   CD WS+G  + E+  GE  F
Sbjct: 156 GTV-----QSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPF 208

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 35/246 (14%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRC 155
            L ++G G FG VV+      +  VAIK+++  +   +  + E  V+ +L+   +     
Sbjct: 8   FLKELGTGQFG-VVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKL----- 61

Query: 156 VQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           VQ+      +  I IV E +    L ++LR++  R  P  L+ E+ + + E +A++   +
Sbjct: 62  VQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLL-EMCKDVCEGMAYLESKQ 120

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
            IH DL   N L+     VKV D+  LSR   D  Y  ++     ++             
Sbjct: 121 FIHRDLAARNCLVDDQGCVKVSDFG-LSRYVLDDEYTSSVGSKFPVR------------- 166

Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEA---LFQTHENLEHLAMM 330
                    +  PEV+L   ++   D+W+ G ++ E+ S G+     F   E +E ++  
Sbjct: 167 ---------WSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQG 217

Query: 331 ERVLGP 336
            R+  P
Sbjct: 218 LRLYRP 223

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 52/231 (22%)

Query: 100 MGEGTFGQVVE--CFDNEKKEL---VAIKIVRSINKY--REAAMIEIDVLQRLARHDIGG 152
           +G G FG+VVE   +   K +    VA+K+++       REA M E+ ++  L  H+   
Sbjct: 43  LGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHE--- 99

Query: 153 TRCVQIRNWFDYRNH---ICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
                I N          I ++ E    G  L +FLR+       ++ +     Q+ + +
Sbjct: 100 ----NIVNLLGACTIGGPILVITEYCCYG-DLLNFLRRKRESFLTLEDLLSFSYQVAKGM 154

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
           AF+     IH DL   N+LL   + VK+ D+  L+R   +                    
Sbjct: 155 AFLASKNCIHRDLAARNVLLTHGKIVKICDFG-LARDIMN-------------------- 193

Query: 268 TTFEHQDHSYVV--STR---HYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                 D +YVV  + R    + APE I    + +  D+WS G +L E+ S
Sbjct: 194 ------DSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFS 238

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 32/239 (13%)

Query: 99  KMGEGTFGQVVE-CFDNEKKEL-VAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTR 154
           ++G G FG V +  +   KK++ VAIK++++ N+   R+  M E +++ +L    I    
Sbjct: 2   ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYI---- 57

Query: 155 CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
            V++    +    + ++    G  L  FL         +  V EL  Q+   + ++    
Sbjct: 58  -VRMIGVCEAEALMLVMEMASGGPLNKFLSGKK-DEITVSNVVELMHQVSMGMKYLEGKN 115

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
            +H DL   N+LLV+  Y K+ D+        D SY+K   +S        G    +   
Sbjct: 116 FVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYK--ARS-------AGKWPLK--- 163

Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                    + APE I    ++   D+WS G  + E  S G+  ++  +  E ++ +E+
Sbjct: 164 ---------WYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQ 213

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 24/130 (18%)

Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
           R  P +  R    ++  ++ F+HE  +I+ DLK +N+LL +  ++K+ DY       + G
Sbjct: 91  RKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPG 150

Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL 308
                             ++TF          T +Y APE++ G  + +  D W++G ++
Sbjct: 151 DT----------------TSTF--------CGTPNYIAPEILRGEDYGFSVDWWALGVLM 186

Query: 309 VELCSGEALF 318
            E+ +G + F
Sbjct: 187 FEMMAGRSPF 196

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 36/233 (15%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G+FG+V+     E   L A+K+++      +   E  M E  +L     H       
Sbjct: 3   LGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPF----L 58

Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
            Q+   F   + +  V E + G  L   ++K+  R F     R    ++  ++ F+H+  
Sbjct: 59  TQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEITSALMFLHDKG 116

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +I+ DLK +N+LL    + K+ D+        +G                  ++TF    
Sbjct: 117 IIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKT----------------TSTF---- 156

Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                 T  Y APE++  + +    D W++G +L E+  G A F+  EN + L
Sbjct: 157 ----CGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEA-ENEDDL 204

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 36/229 (15%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G G FG+V  C   +  ++ A+K +      + +    A+ E  +L  ++  D     C
Sbjct: 2   IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 61

Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           +     F   + +C + + + G  L+  L ++    F    +R    +++  +  MH   
Sbjct: 62  MTYA--FHTPDKLCFILDLMNGGDLHYHLSQHGV--FSEKEMRFYATEIILGLEHMHNRF 117

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +++ DLKP NILL    +V++ D       SK        P +S                
Sbjct: 118 VVYRDLKPANILLDEHGHVRISDLGLACDFSKKK------PHAS---------------- 155

Query: 275 HSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
               V T  Y APEV+  G  ++   D +S+GC+L +L  G + F+ H+
Sbjct: 156 ----VGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHK 200

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 56/273 (20%), Positives = 94/273 (34%), Gaps = 89/273 (32%)

Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           V +  +    + + +V +   G  L+  + K  + + P + V+    +++ ++  +H   
Sbjct: 48  VCLHKYIVSEDSVFLVLQHAEGGKLWSHISK--FLNIPEECVKRWAAEMVVALDALHREG 105

Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           ++  DL P NILL    ++++             +YF                +  E   
Sbjct: 106 IVCRDLNPNNILLDDRGHIQL-------------TYFSRW-------------SEVEDSC 139

Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVL 334
               V    Y APEV         CD WS+G IL EL +G+ L + H             
Sbjct: 140 DGEAVE-NMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECH------------- 185

Query: 335 GPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD 394
                                      P G  +  +       L +P    + V   A  
Sbjct: 186 ---------------------------PSGINTHTT-------LNIP----EWVSEEARS 207

Query: 395 LIDLLQGLLRYDPAERLKAREA-----LRHPFF 422
           L+   Q LL+++P ERL A  A       HPFF
Sbjct: 208 LL---QQLLQFNPTERLGAGVAGVEDIKSHPFF 237

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 56/262 (21%), Positives = 97/262 (37%), Gaps = 81/262 (30%)

Query: 170 IVFEKLGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENIL 226
           I  E +  SL  F +K  +   + P D++ ++   +++++ ++H  L +IH D+KP N+L
Sbjct: 77  ICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVL 136

Query: 227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRA 286
           +     VK+ D+               L  S A K ID G               + Y A
Sbjct: 137 INRNGQVKLCDF----------GISGYLVDSVA-KTIDAGC--------------KPYMA 171

Query: 287 PEVILG----LGWNYPCDLWSVGCILVELCSGEALFQT-HENLEHLAMMERVLGPLPHHM 341
           PE I       G++   D+WS+G  ++EL +G   + +     + L  +  V  P P   
Sbjct: 172 PERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQV--VEEPSP--- 226

Query: 342 VIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG 401
                                                +LP       +  + +  D +  
Sbjct: 227 -------------------------------------QLPA------EKFSPEFQDFVNK 243

Query: 402 LLRYDPAERLKAREALRHPFFT 423
            L+ +  ER    E L+HPFF 
Sbjct: 244 CLKKNYKERPNYPELLQHPFFE 265

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 40/234 (17%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMI--EIDVLQRLARHD 149
           Y ++  +G G FG+V        +++ A+K++      K  ++A    E D++       
Sbjct: 45  YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAF----- 99

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 VQ+   F    ++ +V E + G  L + +   S    P    R    +++ ++ 
Sbjct: 100 ANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLM---SNYDVPEKWARFYTAEVVLALD 156

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +H +  IH D+KP+N+LL  + ++K+ D+    + +K+G    +               
Sbjct: 157 AIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDT-------------- 202

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEALF 318
                     V T  Y +PEV+   G    +   CD WSVG  L E+  G+  F
Sbjct: 203 ---------AVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPF 247

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 54/246 (21%), Positives = 104/246 (42%), Gaps = 39/246 (15%)

Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYR----EAAMIEIDVLQRLARHDIGGTRC 155
           +G+G+FG+V+        E+ AIK+++     +    +  M E  +L   A+H       
Sbjct: 3   LGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPF----L 58

Query: 156 VQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
             +   F  ++ +  V E +  G  ++   R    R F     R    ++  ++ F+H  
Sbjct: 59  TALHCCFQTKDRLFFVMEYVNGGDLMFQIQRS---RKFDEPRSRFYAAEVTLALMFLHRH 115

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
            +I+ DLK +NILL +  + K+ D+        +G                  +TTF   
Sbjct: 116 GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT----------------TTTF--- 156

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT--HENLEHLAMME 331
                  T  Y APE++  L +    D W++G ++ E+ +G+  F+    ++L    + +
Sbjct: 157 -----CGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHD 211

Query: 332 RVLGPL 337
            VL P+
Sbjct: 212 DVLYPV 217

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 51/219 (23%), Positives = 79/219 (36%), Gaps = 79/219 (36%)

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           MH   +++ DLKP NILL    +V++ D            + K  P +S           
Sbjct: 113 MHNRFVVYRDLKPANILLDEHGHVRISDLGLAC------DFSKKKPHAS----------- 155

Query: 270 FEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                    V T  Y APEV+  G+ ++   D +S+GC+L +L  G + F+ H+  +   
Sbjct: 156 ---------VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE 206

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
           +                DR           ++ PD  +                      
Sbjct: 207 I----------------DRMTLT-----MAVELPDSFSP--------------------- 224

Query: 389 DHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                +L  LL+GLL+ D   RL      A+E   HPFF
Sbjct: 225 -----ELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFF 258

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 37/228 (16%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGG 152
           L  +G+G+FG+V+        EL AIKI++      +   E  M+E  VL    +     
Sbjct: 5   LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPF-- 62

Query: 153 TRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               Q+ + F   + +  V E +  G  +Y   +   ++  P  +      ++   + F+
Sbjct: 63  --LTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKE-PQAVF--YAAEISVGLFFL 117

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H   +I+ DLK +N++L S  ++K+ D+        DG                  + TF
Sbjct: 118 HRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDG----------------VTTRTF 161

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
                     T  Y APE+I    +    D W+ G +L E+ +G+  F
Sbjct: 162 --------CGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPF 201

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 52/240 (21%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMI--EIDVLQRLARHD 149
           Y ++  +G G FG+V        +++ A+K++      K  ++A    E D++       
Sbjct: 45  YDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAF----- 99

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 VQ+   F    ++ +V E + G  L + +   S    P    +    +++ ++ 
Sbjct: 100 ANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLM---SNYDVPEKWAKFYTAEVVLALD 156

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS- 267
            +H + LIH D+KP+N+LL                            K   +KL DFG+ 
Sbjct: 157 AIHSMGLIHRDVKPDNMLL---------------------------DKHGHLKLADFGTC 189

Query: 268 -----TTFEHQDHSYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEALF 318
                T     D +  V T  Y +PEV+   G    +   CD WSVG  L E+  G+  F
Sbjct: 190 MKMDETGMVRCDTA--VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPF 247

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 37/222 (16%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTR 154
           +S++G G  G V +        ++A K++    K   R   + E+ VL     H+     
Sbjct: 10  ISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVL-----HECNSPY 64

Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V     F     I I  E + G SL   L+K      P  ++ ++   +++ + ++ E 
Sbjct: 65  IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREK 122

Query: 214 -RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
            +++H D+KP NIL+ S   +K+ D+                    + +LID  + +F  
Sbjct: 123 HKIMHRDVKPSNILVNSRGEIKLCDF------------------GVSGQLIDSMANSF-- 162

Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 V TR Y +PE + G  ++   D+WS+G  LVE+  G
Sbjct: 163 ------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIG 198

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 39/235 (16%)

Query: 94  YRILSKMGEGTFGQVV---ECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQR-LARHD 149
           + +L  +G G +G+V    +   ++  +L A+K+++     ++A  +E    +R +  H 
Sbjct: 2   FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHV 61

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 V +   F     + ++ + + G  ++  L +     F  D VR    +++ ++ 
Sbjct: 62  RQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDN--FSEDEVRFYSGEIILALE 119

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-S 267
            +H+L +++ D+K ENILL S  +V                            L DFG S
Sbjct: 120 HLHKLGIVYRDIKLENILLDSEGHV---------------------------VLTDFGLS 152

Query: 268 TTF--EHQDHSY-VVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF 318
             F  E ++ +Y    T  Y APE+I G  G     D WS+G ++ EL +G + F
Sbjct: 153 KEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPF 207

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 39/239 (16%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHD 149
           +  L  +G+G+FG+V+        EL AIKI++      +   E  M+E  VL    +  
Sbjct: 2   FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPP 61

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRS-FPIDLVRELGRQLLES 206
                  Q+ + F   + +  V E +  G  +Y   +   ++    +    E+   L   
Sbjct: 62  F----LTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLF-- 115

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
             F+H   +I+ DLK +N++L S  ++K+ D+     +  DG   K              
Sbjct: 116 --FLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTK-------------- 159

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
             TF          T  Y APE+I    +    D W+ G +L E+ +G+A F+  +  E
Sbjct: 160 --TF--------CGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE 208

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 32/238 (13%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           + ++G G FG VV       +  VAIK +       E  + E  V+ +L+       + V
Sbjct: 9   MKELGSGQFG-VVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSH-----PKLV 62

Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           Q+      +  + IV E +    L ++LR+        D++  + + + E + ++     
Sbjct: 63  QLYGVCTQQKPLYIVTEFMENGCLLNYLRQR-QGKLSKDMLLSMCQDVCEGMEYLERNSF 121

Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DL   N L+ S   VKV D+  ++R   D  Y  +      +K              
Sbjct: 122 IHRDLAARNCLVSSTGVVKVSDFG-MTRYVLDDEYTSSSGAKFPVK-------------- 166

Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                   +  PEV     ++   D+WS G ++ E+ + G+  F+   N E + M+ R
Sbjct: 167 --------WSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISR 216

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 47/246 (19%)

Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEID------VLQRLARHDI 150
           L ++G G FG VV       K  VAIK++R      E AM E D      V+ +L+  ++
Sbjct: 9   LKELGSGQFG-VVHLGKWRGKIDVAIKMIR------EGAMSEDDFIEEAKVMMKLSHPNL 61

Query: 151 GGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                VQ+      +  I IV E    G  L ++LR+   +    + + ++   + E++ 
Sbjct: 62  -----VQLYGVCTKQRPIFIVTEYMANG-CLLNYLRERKGK-LGTEWLLDMCSDVCEAME 114

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++     IH DL   N L+     VKV D+  L+R   D  Y  +      +K       
Sbjct: 115 YLESNGFIHRDLAARNCLVGEDNVVKVSDFG-LARYVLDDQYTSSQGTKFPVK------- 166

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                          +  PEV     ++   D+WS G ++ E+ S   +   +E   +  
Sbjct: 167 ---------------WAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKM--PYERFSNSE 209

Query: 329 MMERVL 334
           ++E V 
Sbjct: 210 VVESVS 215

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 27/142 (19%)

Query: 178 SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD 237
           +L  FLR+N  +   I LV  L R +   + ++ E+  +H DL   NIL+ S    KV D
Sbjct: 91  ALDSFLRQNDGQFTVIQLVGML-RGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSD 149

Query: 238 Y---KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG 294
           +   +FL   + D +Y  +L     I+                      + APE I    
Sbjct: 150 FGLSRFLEDDTSDPTYTSSLGGKIPIR----------------------WTAPEAIAYRK 187

Query: 295 WNYPCDLWSVGCILVELCS-GE 315
           +    D+WS G ++ E+ S GE
Sbjct: 188 FTSASDVWSYGIVMWEVMSYGE 209

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 37/191 (19%)

Query: 92  PRYRIL--SKMGEGTFGQVVEC---------------FDNEKKELVAIKIVRS-INKY-R 132
           PR ++    K+GEG FG+V  C               FD  +  LVA+K++R+ + K  R
Sbjct: 3   PRQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDG-QPVLVAVKMLRADVTKTAR 61

Query: 133 EAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRK------ 185
              + EI ++ RL   +I     V + +     + +C++ E +    L  FL +      
Sbjct: 62  NDFLKEIKIMSRLKNPNIIRLLGVCVSD-----DPLCMITEYMENGDLNQFLSQREIEST 116

Query: 186 ----NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL 241
               N+  S  I  +  +  Q+   + ++  L  +H DL   N L+ +   +K+ D+  +
Sbjct: 117 FTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFG-M 175

Query: 242 SRSSKDGSYFK 252
           SR+   G Y++
Sbjct: 176 SRNLYSGDYYR 186

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 28/168 (16%)

Query: 100 MGEGTFGQVVECF--DNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDIGGTR 154
           +GEG FGQV+      +  K   AIK+++   S N +R+ A  E++VL +L  H      
Sbjct: 10  IGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAG-ELEVLCKLGHH----PN 64

Query: 155 CVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELG-------RQLLE 205
            + +    + R ++ I  E   P  +L DFLRK+          +E G       +QLL+
Sbjct: 65  IINLLGACENRGYLYIAIE-YAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQ 123

Query: 206 -------SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK 246
                   + ++ E + IH DL   N+L+      K+ D+  LSR  +
Sbjct: 124 FASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFG-LSRGEE 170

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 50/233 (21%), Positives = 96/233 (41%), Gaps = 48/233 (20%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDIGG 152
           +L ++G+G +G V +         +A+K +R     +K+ +  M E+D+L +     I  
Sbjct: 5   VLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIM-ELDILHKAVSPYI-- 61

Query: 153 TRCVQIRNWFDYRN--HICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              V     F      ++C+ +   G    LY      +    P D++R +   +++ + 
Sbjct: 62  ---VDFYGAFFIEGAVYMCMEYMDAGSLDKLYA--GGVATEGIPEDVLRRITYAVVKGLK 116

Query: 209 FMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
           F+ E   +IH D+KP N+L+     VK+ D+         G+   +L K++         
Sbjct: 117 FLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGV------SGNLVASLAKTN--------- 161

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLG------WNYPCDLWSVGCILVELCSG 314
                      +  + Y APE I   G      +    D+WS+G  ++E+  G
Sbjct: 162 -----------IGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALG 203

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 37/142 (26%)

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H+L +I+ D+K ENILL S                 +G           + L DFG + 
Sbjct: 121 LHKLGIIYRDIKLENILLDS-----------------NGH----------VVLTDFGLSK 153

Query: 270 FEHQDHSY----VVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELCSGEALFQTH-E 322
             H+D          T  Y AP+++ G   G +   D WS+G ++ EL +G + F    E
Sbjct: 154 EFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGE 213

Query: 323 NLEHLAMMERVLG---PLPHHM 341
                 +  R+L    P P  M
Sbjct: 214 KNSQAEISRRILKSEPPYPQEM 235

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 65/246 (26%)

Query: 100 MGEGTFGQVVECFDNEKKEL-----VAIKIVR---SINKYREAAMIEIDVLQRLARHDI- 150
           +GEG FG+VV+      K       VA+K+++   S ++ R   + E ++L+++    + 
Sbjct: 8   LGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELR-DLLSEFNLLKQVNHPHVI 66

Query: 151 ---GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLR---------------KNSY---- 188
              G   C Q     D    + + + K G SL  FLR               +NS     
Sbjct: 67  KLYGA--CSQ-----DGPLLLIVEYAKYG-SLRSFLRESRKVGPSYLGSDGNRNSSYLDN 118

Query: 189 ---RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
              R+  +  +     Q+   + ++ E++L+H DL   N+L+     +K+ D+       
Sbjct: 119 PDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVY 178

Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
           ++ SY K       +K +   S      DH Y   +                  D+WS G
Sbjct: 179 EEDSYVKRSKGRIPVKWMAIESLF----DHIYTTQS------------------DVWSFG 216

Query: 306 CILVEL 311
            +L E+
Sbjct: 217 VLLWEI 222

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 29/141 (20%)

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+L +V  +H   +IH D+K  NILL S   VK+ D+ F               K  A  
Sbjct: 151 QVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGF--------------SKMYAAT 196

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
           + D    TF          T +Y APE+     ++   D++S+G +L EL + +  F   
Sbjct: 197 VSDDVGRTF--------CGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDG- 247

Query: 322 ENLEHLAMMERVLG----PLP 338
           EN+E +  M + L     PLP
Sbjct: 248 ENMEEV--MHKTLAGRYDPLP 266

Length = 496

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 37/231 (16%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHD 149
           +  L  +G+G+FG+V+        EL AIKI++      +   E  M+E  VL    +  
Sbjct: 2   FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGK-- 59

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
                  Q+ + F   + +  V E +  G  +Y   +   ++  P  +      ++   +
Sbjct: 60  --PPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFKE-PHAVF--YAAEIAIGL 114

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            F+H   +I+ DLK +N++L +  ++K+ D+     +   G   +               
Sbjct: 115 FFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTR--------------- 159

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            TF          T  Y APE+I    +    D W+ G +L E+ +G+  F
Sbjct: 160 -TF--------CGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPF 201

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 37/218 (16%)

Query: 98  SKMGEGTFGQVVE-CFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           + +G+G FG V+   +  +K   VA+K ++  +   +A + E  V+  L RH       V
Sbjct: 12  ATIGKGEFGDVMLGDYRGQK---VAVKCLKDDSTAAQAFLAEASVMTTL-RHP----NLV 63

Query: 157 QIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           Q+       N + IV E +   SL D+LR        +         + E + ++ E   
Sbjct: 64  QLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNF 123

Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           +H DL   N+L+      KV D+  L++ +  G     LP    +K              
Sbjct: 124 VHRDLAARNVLVSEDLVAKVSDFG-LAKEASQGQDSGKLP----VK-------------- 164

Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                   + APE +    ++   D+WS G +L E+ S
Sbjct: 165 --------WTAPEALREKKFSTKSDVWSFGILLWEIYS 194

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 28/168 (16%)

Query: 100 MGEGTFGQVVECFDNEK--KELVAIKIVR---SINKYREAAMIEIDVLQRLARHDIGGTR 154
           +GEG FGQV++    +   +   AIK ++   S + +R+ A  E++VL +L  H      
Sbjct: 3   IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAG-ELEVLCKLGHH----PN 57

Query: 155 CVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELG-------RQLLE 205
            + +    ++R ++ +  E   P  +L DFLRK+                     +QLL 
Sbjct: 58  IINLLGACEHRGYLYLAIE-YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLH 116

Query: 206 -------SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK 246
                   + ++ + + IH DL   NIL+      K+ D+  LSR  +
Sbjct: 117 FAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFG-LSRGQE 163

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 64/227 (28%), Positives = 91/227 (40%), Gaps = 48/227 (21%)

Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHD-----IG 151
           K+G+G FG V +       E VA+K  RS      +   + E ++L++   H      IG
Sbjct: 2   KIGKGNFGDVYKGVLKGNTE-VAVKTCRSTLPPDLKRKFLQEAEILKQY-DHPNIVKLIG 59

Query: 152 GTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
              CVQ       +  I IV E   G SL  FLRK   R      V++L +  L++ A M
Sbjct: 60  --VCVQ-------KQPIYIVMELVPGGSLLTFLRKKKNRL----TVKKLLQMSLDAAAGM 106

Query: 211 HELR---LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
             L     IH DL   N L+     +K+ D+  +SR  + G Y      S  +K I    
Sbjct: 107 EYLESKNCIHRDLAARNCLVGENNVLKISDFG-MSREEEGGIY----TVSDGLKQIPIKW 161

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           T                 APE +    +    D+WS G +L E  S 
Sbjct: 162 T-----------------APEALNYGRYTSESDVWSYGILLWETFSL 191

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 25/133 (18%)

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q++ ++  +H  +++H DLK  NI L+    +K+ D+ F  + S   S            
Sbjct: 177 QIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVS------------ 224

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
            +D  S+            T +Y APE+     ++   D+WS+G IL EL +    F+  
Sbjct: 225 -LDVASS---------FCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGP 274

Query: 322 ENLEHLAMMERVL 334
              E   +M++VL
Sbjct: 275 SQRE---IMQQVL 284

Length = 478

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 23/133 (17%)

Query: 179 LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY 238
           L D++R+N  R    DL+     Q+ + ++++ E+RL+H DL   N+L+ S  +VK+ D+
Sbjct: 95  LLDYVRENKDRIGSQDLL-NWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDF 153

Query: 239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYP 298
                                 +L+D   T + H D   V     + A E IL   + + 
Sbjct: 154 GL-------------------ARLLDIDETEY-HADGGKV--PIKWMALESILHRRFTHQ 191

Query: 299 CDLWSVGCILVEL 311
            D+WS G  + EL
Sbjct: 192 SDVWSYGVTVWEL 204

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 168 ICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENI 225
           + IV E   LG  L  +L+ N Y S  +  +     QL  ++A++   R +H D+   N+
Sbjct: 81  VWIVMELAPLG-ELRSYLQVNKY-SLDLASLILYSYQLSTALAYLESKRFVHRDIAARNV 138

Query: 226 LLVSAEYVKVPDYKFLSRSSKDGSYFK 252
           L+ S + VK+ D+  LSR  +D SY+K
Sbjct: 139 LVSSPDCVKLGDFG-LSRYLEDESYYK 164

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 56/267 (20%), Positives = 95/267 (35%), Gaps = 104/267 (38%)

Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
           +++ + RQ+L ++  +H   ++H D+KP+NI+                            
Sbjct: 256 IIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFS-------------------------- 289

Query: 255 PKSSAIKLIDFGSTT-----FEHQDHSYVVSTRHYRAPE---------------VILGLG 294
             S + K+ID G+         +    +++  R Y APE               V   L 
Sbjct: 290 EGSGSFKIIDLGAAADLRVGINYIPKEFLLDPR-YAAPEQYIMSTQTPSAPSAPVATALS 348

Query: 295 ---W--NYP--CDLWSVGCILVELC-----SGEALFQTHENLEH----LAMMERVLGPLP 338
              W  N P   D++S G I +++      S   L Q +  L+     L    +++ P  
Sbjct: 349 PVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEP-- 406

Query: 339 HHMVIRADRRAEKYFRRGAR-LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID 397
                    RA    RRG   LD   GA         W                     +
Sbjct: 407 ---------RASPDLRRGFEVLDLDGGAG--------W---------------------E 428

Query: 398 LLQGLLRYDPAERLKAREALRHPFFTR 424
           LL+ ++R+   +R+ A+ AL HP+F R
Sbjct: 429 LLKSMMRFKGRQRISAKAALAHPYFDR 455

Length = 566

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMI-EIDVLQRLARHDIG 151
           I+  +  G FG+V         +L A+K+V+    INK     +  E D L  L++    
Sbjct: 8   IVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALA-LSKSPF- 65

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               V +       N++ +V E L G  +   L    Y  F  ++  +   ++  ++ ++
Sbjct: 66  ---IVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIYGY--FDEEMAVKYISEVALALDYL 120

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDY 238
           H   +IH DLKP+N+L+ +  ++K+ D+
Sbjct: 121 HRHGIIHRDLKPDNMLISNEGHIKLTDF 148

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 54/233 (23%), Positives = 91/233 (39%), Gaps = 34/233 (14%)

Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V          K+  VAIK ++     K R+  + E  ++ + + H+I    
Sbjct: 13  IGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNI---- 68

Query: 155 CVQIRNWFDYRNHICIVFEKLGPSLYD-FLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++           I+ E +     D +LR +        LV  L R +   + ++ ++
Sbjct: 69  -IRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGML-RGIAAGMKYLSDM 126

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR                  L D    T+   
Sbjct: 127 NYVHRDLAARNILVNSNLECKVSDFG-LSRV-----------------LEDDPEGTYTTS 168

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE 325
                +    + APE I    +    D+WS G ++ E+ S GE  +    N E
Sbjct: 169 GGKIPI---RWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHE 218

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 42/248 (16%)

Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     VQ+
Sbjct: 13  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNL-----VQL 67

Query: 159 RNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
                      I+ E +   +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH
Sbjct: 68  LGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIH 127

Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            DL   N L+     VKV D+  LSR     +Y  +      IK                
Sbjct: 128 RDLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK---------------- 170

Query: 278 VVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCS-------GEALFQTHENLEHL 327
                 + APE    L +N      D+W+ G +L E+ +       G  L Q +E LE  
Sbjct: 171 ------WTAPE---SLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKG 221

Query: 328 AMMERVLG 335
             MER  G
Sbjct: 222 YRMERPEG 229

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 28/141 (19%)

Query: 178 SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD 237
           SL  FLR+N  +     LV  L R +   + ++ E+  +H DL   NIL+ S    KV D
Sbjct: 91  SLDKFLRENDGKFTVGQLVGML-RGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSD 149

Query: 238 YKFLSR--SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGW 295
           +  LSR     + +Y     K                           + APE I    +
Sbjct: 150 FG-LSRRLEDSEATYTTKGGKIPI-----------------------RWTAPEAIAYRKF 185

Query: 296 NYPCDLWSVGCILVELCS-GE 315
               D+WS G ++ E+ S GE
Sbjct: 186 TSASDVWSFGIVMWEVMSYGE 206

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	433
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
PTZ00284	467	protein kinase; Provisional	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG1167	418	consensus Serine/threonine protein kinase of the C	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
KOG1027	903	consensus Serine/threonine protein kinase and endo	100.0
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	100.0
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
KOG1152	772	consensus Signal transduction serine/threonine kin	100.0
KOG0576	829	consensus Mitogen-activated protein kinase kinase	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.97
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.97
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.97
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.96
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.96
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.96
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.96
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.95
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.94
PRK09188	365	serine/threonine protein kinase; Provisional	99.94
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.94
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.93
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.92
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.91
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.91
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.91
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.9
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.89
PRK10345	210	hypothetical protein; Provisional	99.88
PRK12274	218	serine/threonine protein kinase; Provisional	99.88
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.86
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.84
smart00090	237	RIO RIO-like kinase.	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.84
PRK14879	211	serine/threonine protein kinase; Provisional	99.8
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.78
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.77
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.75
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.75
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.75
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.75
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.72
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.69
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.67
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.66
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.51
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.5
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.5
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.49
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.47
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.42
KOG1243	690	consensus Protein kinase [General function predict	99.41
KOG3087	229	consensus Serine/threonine protein kinase [General	99.39
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.27
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.22
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	99.2
KOG2137	700	consensus Protein kinase [Signal transduction mech	99.15
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.14
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	99.08
PRK09902	216	hypothetical protein; Provisional	98.96
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.94
COG4248	637	Uncharacterized protein with protein kinase and he	98.88
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.85
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.83
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.66
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.59
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.57
PF01636	239	APH: Phosphotransferase enzyme family This family	98.56
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	98.52
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.49
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	98.42
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.33
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.29
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.18
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	98.16
PLN02876	822	acyl-CoA dehydrogenase	98.12
KOG2270	520	consensus Serine/threonine protein kinase involved	98.03
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.02
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	98.0
PRK09550	401	mtnK methylthioribose kinase; Reviewed	97.86
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.86
KOG1093	725	consensus Predicted protein kinase (contains TBC a	97.84
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.82
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.66
PRK05231	319	homoserine kinase; Provisional	97.64
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.61
KOG2268	465	consensus Serine/threonine protein kinase [Signal	97.51
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	97.38
PLN02236	344	choline kinase	97.3
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.22
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	97.21
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	97.19
PRK10593	297	hypothetical protein; Provisional	97.07
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	97.05
PRK11768	325	serine/threonine protein kinase; Provisional	96.94
PRK12396	409	5-methylribose kinase; Reviewed	96.91
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	96.86
PLN02756	418	S-methyl-5-thioribose kinase	96.83
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	96.77
PTZ00384	383	choline kinase; Provisional	96.49
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	96.26
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	95.98
KOG1236	565	consensus Predicted unusual protein kinase [Genera	95.98
PRK06148	1013	hypothetical protein; Provisional	95.91
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	95.88
PTZ00296	442	choline kinase; Provisional	95.84
PHA03111	444	Ser/Thr kinase; Provisional	95.65
COG2334	331	Putative homoserine kinase type II (protein kinase	95.5
KOG2269	531	consensus Serine/threonine protein kinase [Signal	95.39

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.3e-65  Score=456.75  Aligned_cols=349  Identities=60%  Similarity=1.045  Sum_probs=313.1

Q ss_pred             CCCCCCCCCCCCCCCceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH
Q 013941           66 PRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL  145 (433)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l  145 (433)
                      .+...+++.+++..|+|.+..|+.+.++|.+++.||+|.||.|..+.+..++..||||+++...+.++..+.|+++|+++
T Consensus        63 ~~~~~~~~~~dD~dGH~v~~~gD~l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki  142 (415)
T KOG0671|consen   63 ARLESRPGRPDDKDGHYVYQVGDILTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKI  142 (415)
T ss_pred             ccccCCCCCCCCCCceEEEEeccccccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            56677788889999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HhCC-CCCcceeEecceeccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCc
Q 013941          146 ARHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPEN  224 (433)
Q Consensus       146 ~~~~-i~~~~~v~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~N  224 (433)
                      .+.. -+...|+.+.+||+..++.|||+|.+|.++.+++..+....++...++.++.||+++++|||+.+++|-||||+|
T Consensus       143 ~~~DP~g~~rcv~m~~wFdyrghiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPEN  222 (415)
T KOG0671|consen  143 NESDPNGKFRCVQMRDWFDYRGHICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPEN  222 (415)
T ss_pred             HhcCCCCceEEEeeehhhhccCceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChhe
Confidence            7655 455678999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             EEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHH
Q 013941          225 ILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSV  304 (433)
Q Consensus       225 Ili~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  304 (433)
                      ||+.+..+.++.+.+..       ..+....++..++|+|||.|....+..++++.|..|+|||++.+.+++.++||||+
T Consensus       223 ILfvss~~~~~~~~k~~-------~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSi  295 (415)
T KOG0671|consen  223 ILFVSSEYFKTYNPKKK-------VCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSI  295 (415)
T ss_pred             EEEeccceEEEeccCCc-------cceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceee
Confidence            99998887776554432       12223445668999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhh
Q 013941          305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI  384 (433)
Q Consensus       305 G~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (433)
                      ||||+|+++|...|++.++.+++++|++++|++|..++.+..  .++|+..+ +++|++....++ .+..++..+.....
T Consensus       296 GCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~--~~Kyf~~~-rldw~e~~~~~~-~k~v~~~ckpl~~~  371 (415)
T KOG0671|consen  296 GCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTR--KEKYFRRG-RLDWPEVSSKGK-SKYVFEPCKPLKKY  371 (415)
T ss_pred             eeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhh--hHhhhhcc-cccCcccccccc-chhhhcCCccHHHH
Confidence            999999999999999999999999999999999999887765  78899988 999999887776 55555555555566


Q ss_pred             hhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       385 ~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ....+.....+.|||++||.+||++|+|+.|+|.||||+.-
T Consensus       372 ~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~HpFF~~~  412 (415)
T KOG0671|consen  372 MLQDDLEHVQLFDLLRRMLEFDPARRITLREALSHPFFARL  412 (415)
T ss_pred             hccCcHHHhHHHHHHHHHHccCccccccHHHHhcCHHhhcC
Confidence            66666677789999999999999999999999999999863

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=1.8e-59  Score=450.12  Aligned_cols=324  Identities=40%  Similarity=0.699  Sum_probs=272.5

Q ss_pred             CCCCCCceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHH-hCCCCCc
Q 013941           75 PDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA-RHDIGGT  153 (433)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~-~~~i~~~  153 (433)
                      .++.++.|.+..++.+..+|.|.+.||+|+||.|.+|.+..|++.||||++++......+...|+.+|..|+ |.+-...
T Consensus       169 ~~~~~~dY~~v~~d~i~~rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~  248 (586)
T KOG0667|consen  169 FDDEDGDYQLVVNDHIAYRYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKY  248 (586)
T ss_pred             CCCCCCceeEEecceeEEEEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCe
Confidence            455677899999999999999999999999999999999999999999999998888889999999999999 6666678


Q ss_pred             ceeEecceeccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcc
Q 013941          154 RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYV  233 (433)
Q Consensus       154 ~~v~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~  233 (433)
                      |+|+++++|.+.+|+|||+|.++.+|+++++.+....++...++.++.||+.||.+||+.||||+||||||||+.+.   
T Consensus       249 n~Vrm~d~F~fr~HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~---  325 (586)
T KOG0667|consen  249 NIVRMLDYFYFRNHLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDP---  325 (586)
T ss_pred             eEEEeeeccccccceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccC---
Confidence            99999999999999999999999999999999988899999999999999999999999999999999999999764   


Q ss_pred             cccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh
Q 013941          234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       234 ~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  313 (433)
                                            .+..+||+|||+|.......-+.+.+..|+|||++.|.+|+.+.||||||||++||++
T Consensus       326 ----------------------~r~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~t  383 (586)
T KOG0667|consen  326 ----------------------KRSRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFT  383 (586)
T ss_pred             ----------------------CcCceeEEecccccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhc
Confidence                                  3448999999999998887777899999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcC-CccccCCCCCC----c-hhhHHHHH----HhcCch--
Q 013941          314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR-GARLDWPDGAT----S-RDSMRAVW----KLLRLP--  381 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~-~~~~~~~~----~~~~~~--  381 (433)
                      |.+.|.+.+..+++..|.+++|.+|..++..+... .+||.+ ...........    . ....+...    .....+  
T Consensus       384 G~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~-~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~  462 (586)
T KOG0667|consen  384 GEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKA-HKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPG  462 (586)
T ss_pred             CccccCCCCHHHHHHHHHHHhCCCCHHHHHhcccc-ceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCC
Confidence            99999999999999999999998888888777555 455554 22222111111    0 00111111    111111  


Q ss_pred             --hhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          382 --NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       382 --~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                        .............+.|||.+||.+||.+|+|+.|+|+||||+.
T Consensus       463 ~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~  507 (586)
T KOG0667|consen  463 SRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTG  507 (586)
T ss_pred             CcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCccccc
Confidence              1111112244567899999999999999999999999999994

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-60  Score=432.46  Aligned_cols=260  Identities=30%  Similarity=0.492  Sum_probs=220.5

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh--------hHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--------YREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      .+.+.|.+.+.||+|+||.|-+|..+.||+.||||++++...        ......+|++||++|+||+|     |++++
T Consensus       169 s~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~I-----V~~~d  243 (475)
T KOG0615|consen  169 SFNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNI-----VRIKD  243 (475)
T ss_pred             hhcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCE-----EEEee
Confidence            456679999999999999999999999999999999974321        22335789999999999988     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      +|+..+..||||||+ ||+|.+++-.++  .+.+...+.+++||+.||.|||++||+||||||+|||+..+.        
T Consensus       244 ~f~~~ds~YmVlE~v~GGeLfd~vv~nk--~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~--------  313 (475)
T KOG0615|consen  244 FFEVPDSSYMVLEYVEGGELFDKVVANK--YLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDA--------  313 (475)
T ss_pred             eeecCCceEEEEEEecCccHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCC--------
Confidence            999999999999999 999999998876  788999999999999999999999999999999999997642        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCCC---CCccchHHHHHHHHHHHHhC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGLG---WNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~~---~~~~~DiwSlG~il~el~~g  314 (433)
                                      .+..+||+|||+|+..+.  ...+.|||+.|.|||++.+..   +..++|||||||+||-+++|
T Consensus       314 ----------------e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG  377 (475)
T KOG0615|consen  314 ----------------EDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSG  377 (475)
T ss_pred             ----------------cceEEEecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEecc
Confidence                            456799999999998853  346789999999999998765   33588999999999999999


Q ss_pred             CCCCCCCChHH-HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          315 EALFQTHENLE-HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       315 ~~pf~~~~~~~-~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      .+||.+..... ..++|.+....+-                                              ...+..++.
T Consensus       378 ~pPFS~~~~~~sl~eQI~~G~y~f~----------------------------------------------p~~w~~Ise  411 (475)
T KOG0615|consen  378 YPPFSEEYTDPSLKEQILKGRYAFG----------------------------------------------PLQWDRISE  411 (475)
T ss_pred             CCCcccccCCccHHHHHhcCccccc----------------------------------------------ChhhhhhhH
Confidence            99998765443 4444443221111                                              122356688


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +.++||.+||..||++|+|+.|+|+||||+..
T Consensus       412 ea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~~  443 (475)
T KOG0615|consen  412 EALDLINWMLVVDPENRPSADEALNHPWFKDA  443 (475)
T ss_pred             HHHHHHHHhhEeCcccCcCHHHHhcChhhhcc
Confidence            99999999999999999999999999999954

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.1e-58  Score=438.03  Aligned_cols=257  Identities=32%  Similarity=0.525  Sum_probs=230.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEecc----chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~----~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .+|...+.||+|||+.||.+++..+|+.||+|++.+    ....++...+||+|.+.|+|+||     |+++++|++.++
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnI-----V~f~~~FEDs~n   92 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNI-----VQFYHFFEDSNN   92 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcE-----EeeeeEeecCCc
Confidence            579999999999999999999999999999999986    45677889999999999999888     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|||+|+| .++|..++.++.  .++|.+++.+++||+.||.|||+++|||||||..|+|+++                 
T Consensus        93 VYivLELC~~~sL~el~Krrk--~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~-----------------  153 (592)
T KOG0575|consen   93 VYIVLELCHRGSLMELLKRRK--PLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNE-----------------  153 (592)
T ss_pred             eEEEEEecCCccHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecC-----------------
Confidence            99999999 999999998654  8999999999999999999999999999999999999854                 


Q ss_pred             CCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                +..+||+|||+|....   +...+.|||+.|.|||++....++..+||||+|||||-||.|++||...+-
T Consensus       154 ----------~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~v  223 (592)
T KOG0575|consen  154 ----------NMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTV  223 (592)
T ss_pred             ----------cCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchH
Confidence                      4578999999987765   455778999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+.+..|...-..+|.                                                  ..+.++++||.+||
T Consensus       224 kety~~Ik~~~Y~~P~--------------------------------------------------~ls~~A~dLI~~lL  253 (592)
T KOG0575|consen  224 KETYNKIKLNEYSMPS--------------------------------------------------HLSAEAKDLIRKLL  253 (592)
T ss_pred             HHHHHHHHhcCccccc--------------------------------------------------ccCHHHHHHHHHHh
Confidence            8888888765555443                                                  34778999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCCccccCCC
Q 013941          404 RYDPAERLKAREALRHPFFTRDVRRCGFP  432 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~~~~~~~~  432 (433)
                      +.||.+|||+++||.|+||++..-....|
T Consensus       254 ~~~P~~Rpsl~~vL~h~Ff~~g~~p~~lp  282 (592)
T KOG0575|consen  254 RPNPSERPSLDEVLDHPFFKSGFTPARLP  282 (592)
T ss_pred             cCCcccCCCHHHHhcCHhhhCCCcCCCCC
Confidence            99999999999999999997664444333

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-57  Score=408.22  Aligned_cols=255  Identities=25%  Similarity=0.445  Sum_probs=219.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEec--cchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC-eE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN-HI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~--~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~-~~  168 (433)
                      ...+.++.||+|..|+||+|+++.|++.+|+|++.  .......++.+|+++++..++++|     |.+++.|...+ .+
T Consensus        79 ~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyI-----V~~ygaF~~~~~~i  153 (364)
T KOG0581|consen   79 SDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYI-----VGFYGAFYSNGEEI  153 (364)
T ss_pred             HHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCe-----eeEeEEEEeCCceE
Confidence            35778899999999999999999999999999994  345667888999999999988877     99999999988 59


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+|||| +|+|.+++...+  .++|.....++.++++||.|||+ ++||||||||+|||+++.|               
T Consensus       154 sI~mEYMDgGSLd~~~k~~g--~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskG---------------  216 (364)
T KOG0581|consen  154 SICMEYMDGGSLDDILKRVG--RIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKG---------------  216 (364)
T ss_pred             EeehhhcCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCC---------------
Confidence            9999999 999999998764  79999999999999999999995 9999999999999997766               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC--Ch
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH--EN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~--~~  323 (433)
                                  .+||||||.+..... ...+++||..|||||.+.+..|+.++||||||++++|+++|++||...  ..
T Consensus       217 ------------eVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~  284 (364)
T KOG0581|consen  217 ------------EVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPY  284 (364)
T ss_pred             ------------CEEeccccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCC
Confidence                        678888888776543 346689999999999999999999999999999999999999999774  23


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccC-CchHHHHHHHHHh
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD-HSAGDLIDLLQGL  402 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~li~~~  402 (433)
                      ...+..+..++..+|+.+                                              +. .+|+++++||..|
T Consensus       285 ~~~~~Ll~~Iv~~ppP~l----------------------------------------------P~~~fS~ef~~FV~~C  318 (364)
T KOG0581|consen  285 LDIFELLCAIVDEPPPRL----------------------------------------------PEGEFSPEFRSFVSCC  318 (364)
T ss_pred             CCHHHHHHHHhcCCCCCC----------------------------------------------CcccCCHHHHHHHHHH
Confidence            344555555554333311                                              12 3688999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCc
Q 013941          403 LRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      |++||.+|+|++|+++|||+++..
T Consensus       319 L~Kdp~~R~s~~qLl~Hpfi~~~~  342 (364)
T KOG0581|consen  319 LRKDPSERPSAKQLLQHPFIKKFE  342 (364)
T ss_pred             hcCCcccCCCHHHHhcCHHHhhcc
Confidence            999999999999999999999653

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-58  Score=421.81  Aligned_cols=283  Identities=31%  Similarity=0.540  Sum_probs=234.1

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHH--HHHHHHHHHHHHH-hCCCCCcceeEecceeccCC
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE--AAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~--~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~~  166 (433)
                      +.+||.++++||.|.||.||+|+...+++.||||.+++.-...+  .-.+|+..|++|+ |+||     +++.+++.+.+
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpni-----ikL~Evi~d~~   82 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNI-----IKLKEVIRDND   82 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcc-----hhhHHHhhccC
Confidence            45789999999999999999999999999999999975433233  3457999999999 8887     99999998877


Q ss_pred             -eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 -HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 -~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                       .+|+|||||..+|++++..+ ++.|++..++.|+.||++||+|+|.+|+.|||+||+||||..                
T Consensus        83 ~~L~fVfE~Md~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~----------------  145 (538)
T KOG0661|consen   83 RILYFVFEFMDCNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISG----------------  145 (538)
T ss_pred             ceEeeeHHhhhhhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEecc----------------
Confidence             99999999999999999887 579999999999999999999999999999999999999953                


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                 +..+||+|||+|+......  +..+.|.+|+|||++... -|+.++||||+|||++|+.+-++.|.|.+
T Consensus       146 -----------~~~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~s  214 (538)
T KOG0661|consen  146 -----------NDVIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGAS  214 (538)
T ss_pred             -----------cceeEecccccccccccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCc
Confidence                       3468999999998766544  447999999999998765 58999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      +.+++..|..++|.+-...+.....     ....-.+.+|.-               .+..........+.++.+||.+|
T Consensus       215 E~Dqi~KIc~VLGtP~~~~~~eg~~-----La~~mnf~~P~~---------------~~~~l~~L~p~~s~~~~~li~~l  274 (538)
T KOG0661|consen  215 EIDQIYKICEVLGTPDKDSWPEGYN-----LASAMNFRFPQV---------------KPSPLKDLLPNASSEAASLIERL  274 (538)
T ss_pred             HHHHHHHHHHHhCCCccccchhHHH-----HHHHhccCCCcC---------------CCCChHHhCcccCHHHHHHHHHH
Confidence            9999999999999876543332200     001111112110               01111222344788999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCC
Q 013941          403 LRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |.|||.+||||.|+|+||||+..
T Consensus       275 l~WDP~kRpTA~~al~~pffq~~  297 (538)
T KOG0661|consen  275 LAWDPDKRPTASQALQHPFFQVG  297 (538)
T ss_pred             hcCCCccCccHHHHhcCcccccc
Confidence            99999999999999999999975

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-57  Score=405.61  Aligned_cols=251  Identities=30%  Similarity=0.506  Sum_probs=218.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +.|++++.||+|+||+||+++.+.+++.||+|++++..    ........|..||.+++||.|     |.++..|++.+.
T Consensus        25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFi-----v~l~ysFQt~~k   99 (357)
T KOG0598|consen   25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFI-----VKLIYSFQTEEK   99 (357)
T ss_pred             hheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcE-----eeeEEecccCCe
Confidence            46999999999999999999999999999999998643    345667789999999988888     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|||+||+ ||.|..+|++.+  .+++..++.++..|+.||.|||++|||||||||+|||++.+|+              
T Consensus       100 LylVld~~~GGeLf~hL~~eg--~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GH--------------  163 (357)
T KOG0598|consen  100 LYLVLDYLNGGELFYHLQREG--RFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGH--------------  163 (357)
T ss_pred             EEEEEeccCCccHHHHHHhcC--CcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCc--------------
Confidence            99999999 999999999876  8999999999999999999999999999999999999987775              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                   ++|+|||+++...   ....+++||+.|||||++.+.+|+.++|+||||+++|||++|.+||.+.+.
T Consensus       164 -------------i~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~  230 (357)
T KOG0598|consen  164 -------------IKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDV  230 (357)
T ss_pred             -------------EEEeccccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccH
Confidence                         5666666665322   234557999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......|.+.....++                                                 .-.+.++++||+++|
T Consensus       231 ~~~~~~I~~~k~~~~p-------------------------------------------------~~ls~~ardll~~LL  261 (357)
T KOG0598|consen  231 KKMYDKILKGKLPLPP-------------------------------------------------GYLSEEARDLLKKLL  261 (357)
T ss_pred             HHHHHHHhcCcCCCCC-------------------------------------------------ccCCHHHHHHHHHHh
Confidence            8877777654322111                                                 124778999999999


Q ss_pred             ccCCCCCC----CHHHHhcCCCCCCC
Q 013941          404 RYDPAERL----KAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~----ta~ell~hp~f~~~  425 (433)
                      ..||++|+    .++++.+||||.+.
T Consensus       262 ~rdp~~RLg~~~d~~~ik~HpfF~~i  287 (357)
T KOG0598|consen  262 KRDPRQRLGGPGDAEEIKRHPFFKGI  287 (357)
T ss_pred             ccCHHHhcCCCCChHHhhcCcccccC
Confidence            99999996    68999999999874

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=5.7e-57  Score=393.36  Aligned_cols=282  Identities=31%  Similarity=0.586  Sum_probs=232.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|+.+.++|+|+||+||+|+++.||+.||||++...+   ...+..++|++.|++++|+|+     |.++++|.....+
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NL-----VnLiEVFrrkrkl   76 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENL-----VNLIEVFRRKRKL   76 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchH-----HHHHHHHHhccee
Confidence            46999999999999999999999999999999986433   345778899999999999998     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||+|||..++.+-+.... ..++.+.++.+++|++.|+.|+|++++|||||||+||||+..|                 
T Consensus        77 hLVFE~~dhTvL~eLe~~p-~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~g-----------------  138 (396)
T KOG0593|consen   77 HLVFEYCDHTVLHELERYP-NGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNG-----------------  138 (396)
T ss_pred             EEEeeecchHHHHHHHhcc-CCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCC-----------------
Confidence            9999999888888888766 4699999999999999999999999999999999999998766                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                .+||||||+|+....   ..+..+.|.+|+|||++.+ ..|+..+||||+||++.||++|.+.|.+.++.
T Consensus       139 ----------vvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDi  208 (396)
T KOG0593|consen  139 ----------VVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDI  208 (396)
T ss_pred             ----------cEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchH
Confidence                      567777777765542   2234689999999999998 57999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +++..|...+|.++++...-...  ..+| .|-++.-+...+                ....-....+..+.||+++||.
T Consensus       209 DQLy~I~ktLG~L~prhq~iF~~--N~~F-~Gv~lP~~~~~e----------------pLe~k~p~~s~~~ld~~k~cL~  269 (396)
T KOG0593|consen  209 DQLYLIRKTLGNLIPRHQSIFSS--NPFF-HGVRLPEPEHPE----------------PLERKYPKISNVLLDLLKKCLK  269 (396)
T ss_pred             HHHHHHHHHHcccCHHHHHHhcc--CCce-eeeecCCCCCcc----------------chhhhcccchHHHHHHHHHHhc
Confidence            99999999999988765332211  1111 122222222111                1111223456688999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .||++|++.+|+|.|+||.+-
T Consensus       270 ~dP~~R~sc~qll~H~yFd~~  290 (396)
T KOG0593|consen  270 MDPDDRLSCEQLLHHPYFDGF  290 (396)
T ss_pred             CCccccccHHHHhcChHHHHH
Confidence            999999999999999999653

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-55  Score=411.82  Aligned_cols=266  Identities=26%  Similarity=0.403  Sum_probs=225.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ..+|.+.+.||+|+|++|++|+++.+++.||||++.+..    ....-+.+|-.+|.+| .||+|     ++++-.|+++
T Consensus        72 ~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgi-----vkLy~TFQD~  146 (604)
T KOG0592|consen   72 PNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGI-----VKLYFTFQDE  146 (604)
T ss_pred             hhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCe-----EEEEEEeecc
Confidence            356999999999999999999999999999999997532    2334566799999999 45555     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ..+|+|+||+ +|+|.++|.+.+  .|++..++.++.||+.||+|||++|||||||||+|||++.+++++|+|||-++..
T Consensus       147 ~sLYFvLe~A~nGdll~~i~K~G--sfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l  224 (604)
T KOG0592|consen  147 ESLYFVLEYAPNGDLLDLIKKYG--SFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKIL  224 (604)
T ss_pred             cceEEEEEecCCCcHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccC
Confidence            9999999999 999999999886  8999999999999999999999999999999999999999888777777766554


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                      ........+..           ..........+++||..|.+||++.++..++.+|||+||||||.|+.|.+||.+.++.
T Consensus       225 ~~~~~~~~~~~-----------~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ney  293 (604)
T KOG0592|consen  225 SPSQKSQENPV-----------DPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEY  293 (604)
T ss_pred             ChhhccccCcc-----------CcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHH
Confidence            43321100000           0000111134579999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      ..+..|+.+...+|+.                                                  .++.++|||+++|.
T Consensus       294 liFqkI~~l~y~fp~~--------------------------------------------------fp~~a~dLv~KLLv  323 (604)
T KOG0592|consen  294 LIFQKIQALDYEFPEG--------------------------------------------------FPEDARDLIKKLLV  323 (604)
T ss_pred             HHHHHHHHhcccCCCC--------------------------------------------------CCHHHHHHHHHHHc
Confidence            9999999987777653                                                  35689999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~  424 (433)
                      .||.+|+|++||.+||||.+
T Consensus       324 ~dp~~Rlt~~qIk~HpFF~~  343 (604)
T KOG0592|consen  324 RDPSDRLTSQQIKAHPFFEG  343 (604)
T ss_pred             cCccccccHHHHhhCccccc
Confidence            99999999999999999986

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2e-55  Score=407.99  Aligned_cols=290  Identities=30%  Similarity=0.485  Sum_probs=237.8

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      +..-.+.|+.+++||+|.||.||+|++..+|+.||+|.++...   .......+||.||++|.|+||     +++.+...
T Consensus       112 ~~r~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNI-----ikL~eivt  186 (560)
T KOG0600|consen  112 GPRRADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNI-----IKLEEIVT  186 (560)
T ss_pred             cccchHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcc-----cceeeEEE
Confidence            3344567999999999999999999999999999999998544   345567799999999999988     99999877


Q ss_pred             cC--CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          164 YR--NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       164 ~~--~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      ..  ..+|||+|||..+|..++...+ -.|++.+++.+++||+.||+|||++||+|||||.+||||+.+|          
T Consensus       187 ~~~~~siYlVFeYMdhDL~GLl~~p~-vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G----------  255 (560)
T KOG0600|consen  187 SKLSGSIYLVFEYMDHDLSGLLSSPG-VKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNG----------  255 (560)
T ss_pred             ecCCceEEEEEecccchhhhhhcCCC-cccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCC----------
Confidence            65  7899999999999999987644 4799999999999999999999999999999999999997666          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                       .+||+|||+|++....    .+..+-|.+|+|||++.|. .|+.++|+||.||||.||++|++
T Consensus       256 -----------------~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkP  318 (560)
T KOG0600|consen  256 -----------------VLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKP  318 (560)
T ss_pred             -----------------CEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCC
Confidence                             5777888887754332    3446889999999999987 69999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      .|.+.++.+++..|.+++|.+.+..+...            .+.+.......         ........+.....+....
T Consensus       319 I~~G~tEveQl~kIfklcGSP~e~~W~~~------------kLP~~~~~kp~---------~~y~r~l~E~~~~~~~~~l  377 (560)
T KOG0600|consen  319 ILQGRTEVEQLHKIFKLCGSPTEDYWPVS------------KLPHATIFKPQ---------QPYKRRLRETFKDFPASAL  377 (560)
T ss_pred             CcCCccHHHHHHHHHHHhCCCChhccccc------------cCCcccccCCC---------CcccchHHHHhccCCHHHH
Confidence            99999999999999999999887654311            11111111000         1112222233456678899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCCccccC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRDVRRCG  430 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~~  430 (433)
                      +|+..||..||.+|.||.++|+|+||+.....|.
T Consensus       378 ~Ll~~lL~ldP~kR~tA~~aL~seyF~t~p~~~~  411 (560)
T KOG0600|consen  378 DLLEKLLSLDPDKRGTASSALQSEYFTTEPLPCD  411 (560)
T ss_pred             HHHHHHhccCccccccHHHHhcCcccccCCCCCC
Confidence            9999999999999999999999999977665553

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=3.9e-55  Score=375.64  Aligned_cols=280  Identities=30%  Similarity=0.550  Sum_probs=235.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh---hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+|...++||+|.||+||+|++..+|+.||||.++..+.   ......+|++.|+.++|+||     +.++++|.+.+.+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nI-----i~LiD~F~~~~~l   76 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNI-----IELIDVFPHKSNL   76 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcch-----hhhhhhccCCCce
Confidence            478999999999999999999999999999999975432   34678899999999999888     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      -||+||+..+|...++.+. ..++..+++.++.++++||+|||++.|+||||||.|+||+++|                 
T Consensus        77 ~lVfEfm~tdLe~vIkd~~-i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g-----------------  138 (318)
T KOG0659|consen   77 SLVFEFMPTDLEVVIKDKN-IILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDG-----------------  138 (318)
T ss_pred             EEEEEeccccHHHHhcccc-cccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCC-----------------
Confidence            9999999999999998665 5799999999999999999999999999999999999998776                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                .+||+|||+|+......   ...+-|.+|+|||++.|. .|+..+||||.|||+.||+.|.+-|.|.++.
T Consensus       139 ----------~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDi  208 (318)
T KOG0659|consen  139 ----------QLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDI  208 (318)
T ss_pred             ----------cEEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchH
Confidence                      56777777776654332   223789999999999986 5999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh-hccCCchHHHHHHHHHhc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM-QHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~L  403 (433)
                      +++..|.+.+|.+-++                   .||+-...++...-.    ..+.... ......+.++.||+.+||
T Consensus       209 dQL~~If~~LGTP~~~-------------------~WP~~~~lpdY~~~~----~~P~~~~~~lf~aas~d~ldLl~~m~  265 (318)
T KOG0659|consen  209 DQLSKIFRALGTPTPD-------------------QWPEMTSLPDYVKIQ----QFPKPPLNNLFPAASSDALDLLSKML  265 (318)
T ss_pred             HHHHHHHHHcCCCCcc-------------------cCccccccccHHHHh----cCCCCccccccccccHHHHHHHHhhh
Confidence            9999999999987643                   455544444332221    1111111 134455778899999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          404 RYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .+||.+|+|+.|+|+|+||++...
T Consensus       266 ~ynP~~Rita~qaL~~~yf~~~P~  289 (318)
T KOG0659|consen  266 TYNPKKRITASQALKHPYFKSLPL  289 (318)
T ss_pred             ccCchhcccHHHHhcchhhhcCCC
Confidence            999999999999999999997543

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-54  Score=394.15  Aligned_cols=261  Identities=29%  Similarity=0.488  Sum_probs=223.8

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|.+.++||+|+||+||+|+++.++..||||.+.+.   .+..+.+..|+.+|+.++|+||     |.++++++.++.
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nI-----V~l~d~~~~~~~   83 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNI-----VRLLDCIEDDDF   83 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcce-----eeEEEEEecCCe
Confidence            45799999999999999999999999999999998754   3456777899999999999888     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +||||||| ||+|.++++.++  .+++..++.++.||+.||++||+++||||||||+|||++....              
T Consensus        84 i~lVMEyC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~--------------  147 (429)
T KOG0595|consen   84 IYLVMEYCNGGDLSDYIRRRG--RLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTAR--------------  147 (429)
T ss_pred             EEEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCC--------------
Confidence            99999999 999999999886  8999999999999999999999999999999999999976421              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                             .+....+||+|||+|+......  .+.+|++.|||||++....|+.|+|+||+|+|||+|++|+.||...+..
T Consensus       148 -------~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~~  220 (429)
T KOG0595|consen  148 -------NDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAETPK  220 (429)
T ss_pred             -------CCCCceEEecccchhhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCccccCHH
Confidence                   0111578999999999876543  5679999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +.+..+.+....+|.                                               .....+..+.+|+...|+
T Consensus       221 eL~~~~~k~~~~~~~-----------------------------------------------~~~~~s~~~~~Ll~~ll~  253 (429)
T KOG0595|consen  221 ELLLYIKKGNEIVPV-----------------------------------------------LPAELSNPLRELLISLLQ  253 (429)
T ss_pred             HHHHHHhccccccCc-----------------------------------------------hhhhccCchhhhhhHHHh
Confidence            776655443221111                                               112335567799999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCCc
Q 013941          405 YDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      .||.+|.+..+-+.|+++..+.
T Consensus       254 ~~~~~~~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  254 RNPKDRISFEDFFDHPFLAANP  275 (429)
T ss_pred             cCccccCchHHhhhhhhcccCc
Confidence            9999999999999999998763

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-55  Score=380.01  Aligned_cols=250  Identities=26%  Similarity=0.440  Sum_probs=226.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||.|+||.|.+++++.+|..+|+|++.+..    +..+...+|..+|+.+.||.+     +++.+.+.+.+.
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFl-----v~l~~t~~d~~~  118 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFL-----VKLYGTFKDNSN  118 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCcee-----EEEEEeeccCCe
Confidence            46999999999999999999999999999999998644    345667789999999999887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +||||||. ||.|..++++.+  +|++..++.++.||+.||+|||+++|++|||||+|||++.+|               
T Consensus       119 lymvmeyv~GGElFS~Lrk~~--rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G---------------  181 (355)
T KOG0616|consen  119 LYMVMEYVPGGELFSYLRKSG--RFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNG---------------  181 (355)
T ss_pred             EEEEEeccCCccHHHHHHhcC--CCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCC---------------
Confidence            99999999 999999999876  899999999999999999999999999999999999997766               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  .+||+|||+|+......-+.|||+.|+|||++...+|+.++|+|||||++|||+.|.+||...+....
T Consensus       182 ------------~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~i  249 (355)
T KOG0616|consen  182 ------------HIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQI  249 (355)
T ss_pred             ------------cEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHH
Confidence                        57888888888877777778999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...|....-.+|.                                                  ..+.++++||.++|+.|
T Consensus       250 Y~KI~~~~v~fP~--------------------------------------------------~fs~~~kdLl~~LL~vD  279 (355)
T KOG0616|consen  250 YEKILEGKVKFPS--------------------------------------------------YFSSDAKDLLKKLLQVD  279 (355)
T ss_pred             HHHHHhCcccCCc--------------------------------------------------ccCHHHHHHHHHHHhhh
Confidence            8888776555543                                                  34779999999999999


Q ss_pred             CCCCC-----CHHHHhcCCCCCCC
Q 013941          407 PAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       407 P~~R~-----ta~ell~hp~f~~~  425 (433)
                      -++|.     ..++|.+||||++-
T Consensus       280 ~t~R~gnlknG~~dIk~H~wF~~v  303 (355)
T KOG0616|consen  280 LTKRFGNLKNGVEDIKNHPWFKGV  303 (355)
T ss_pred             hHhhhcCcCCCccccccCcccccc
Confidence            99994     57899999999963

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-54  Score=385.08  Aligned_cols=289  Identities=27%  Similarity=0.466  Sum_probs=236.5

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEecc---chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      ...+..+|..++.||+|+||.|+.|.++.+|+.||||.+..   .....+...+|+.+|+.++|+||     +.+.+++.
T Consensus        17 ~~~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNI-----i~l~di~~   91 (359)
T KOG0660|consen   17 LFEIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENI-----IGLLDIFR   91 (359)
T ss_pred             EEeccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCc-----ceEEeecc
Confidence            34556678889999999999999999999999999998862   33455778899999999999988     88888775


Q ss_pred             c-----CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          164 Y-----RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       164 ~-----~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                      .     -+.+|+|+|+|+.+|...++...  .+++..++.+++||++||+|+|+.+|+||||||+|+|++.+.       
T Consensus        92 p~~~~~f~DvYiV~elMetDL~~iik~~~--~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c-------  162 (359)
T KOG0660|consen   92 PPSRDKFNDVYLVFELMETDLHQIIKSQQ--DLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADC-------  162 (359)
T ss_pred             cccccccceeEEehhHHhhHHHHHHHcCc--cccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCC-------
Confidence            4     45799999999999999998764  699999999999999999999999999999999999997654       


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCcccc-----CCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHH
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH-----QDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~-----~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~  312 (433)
                                          .+||||||+|+...     ...+..+.|.+|+|||++.. ..|+.++||||+|||+.||+
T Consensus       163 --------------------~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL  222 (359)
T KOG0660|consen  163 --------------------DLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEML  222 (359)
T ss_pred             --------------------CEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHH
Confidence                                56777888777663     22355688999999999875 47999999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhh-hhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRAD-RRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      +|++.|.|.+..+++..|...+|.+++..+.... ..+..|...-..                    ..+.......+..
T Consensus       223 ~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~--------------------~p~~~f~~~fp~a  282 (359)
T KOG0660|consen  223 TGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQ--------------------IPKQPFSSIFPNA  282 (359)
T ss_pred             cCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCC--------------------CCCCCHHHHcCCC
Confidence            9999999999999999999999999887766543 223333322110                    0011112234566


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      ++.+.+|+.+||.+||.+|+|++|+|+||||..--...
T Consensus       283 ~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~  320 (359)
T KOG0660|consen  283 NPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPE  320 (359)
T ss_pred             CHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCc
Confidence            88999999999999999999999999999998754333

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=3.2e-54  Score=380.88  Aligned_cols=286  Identities=27%  Similarity=0.440  Sum_probs=232.1

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--C
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--R  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--~  165 (433)
                      .+.|+.+++|++|+||.||+|+++.|++.||+|.++...   ...-...+||.+|.+++|+||     |.+.++...  -
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NI-----V~vkEVVvG~~~  149 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNI-----VEVKEVVVGSNM  149 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCe-----eeeEEEEecccc
Confidence            356999999999999999999999999999999997433   233467899999999999988     888887654  4


Q ss_pred             CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          166 NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       166 ~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      +.+|||||||..+|..++.... ..|...+++.++.|+++||+|||.+.|+|||||++|+|++..|              
T Consensus       150 d~iy~VMe~~EhDLksl~d~m~-q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G--------------  214 (419)
T KOG0663|consen  150 DKIYIVMEYVEHDLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKG--------------  214 (419)
T ss_pred             ceeeeeHHHHHhhHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCC--------------
Confidence            5799999999999999998776 5799999999999999999999999999999999999997666              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                   .+||+|||+|+..+..   .+..+-|.+|+|||++.+. .|+.++|+||+|||+.||+++++.|.+.
T Consensus       215 -------------~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~  281 (419)
T KOG0663|consen  215 -------------ILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGK  281 (419)
T ss_pred             -------------cEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCC
Confidence                         5788888888876665   4556889999999999987 5999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC-chHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH-SAGDLIDLLQ  400 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~li~  400 (433)
                      ...+++..|.+.+|.+.+..+.                   .....+.............++...+... .+....+|+.
T Consensus       282 sE~dQl~~If~llGtPte~iwp-------------------g~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln  342 (419)
T KOG0663|consen  282 SEIDQLDKIFKLLGTPSEAIWP-------------------GYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLN  342 (419)
T ss_pred             chHHHHHHHHHHhCCCccccCC-------------------CccccchhhccccCCCCchhhhhhccccccchhHHHHHH
Confidence            9999999999999988765433                   2221111000000000111111111111 4678899999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      .+|.+||.+|.||+|.|+|.||.+....
T Consensus       343 ~llt~dP~kR~tA~~~L~h~~F~e~P~p  370 (419)
T KOG0663|consen  343 KLLTYDPGKRITAEDGLKHEYFRETPLP  370 (419)
T ss_pred             HHhccCccccccHHHhhcccccccCCCC
Confidence            9999999999999999999999986443

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=3.9e-54  Score=402.79  Aligned_cols=281  Identities=27%  Similarity=0.423  Sum_probs=227.1

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .+.|++++.||+|+||.||+|+.+.||..||+|++++..-    ..+.+..|-.+|....++.+     |+++..|++..
T Consensus       140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~v-----VKLyYsFQD~~  214 (550)
T KOG0605|consen  140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWV-----VKLYYSFQDKE  214 (550)
T ss_pred             cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcE-----EEEEEEecCCC
Confidence            4679999999999999999999999999999999987653    33456668888877666655     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ++||||||+ ||++..+|...+  .|++..++.++.+++.|++.||+.|+|||||||+|+||+..||+||+|||++.-..
T Consensus       215 ~LYLiMEylPGGD~mTLL~~~~--~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~  292 (550)
T KOG0605|consen  215 YLYLIMEYLPGGDMMTLLMRKD--TLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLD  292 (550)
T ss_pred             eeEEEEEecCCccHHHHHHhcC--cCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhh
Confidence            999999999 999999999886  89999999999999999999999999999999999999999999999999985443


Q ss_pred             CCCCccc------CCCCCCCeeeecCCCC--cccc------------C---CCcccccCCcccchhhhhCCCCCccchHH
Q 013941          246 KDGSYFK------NLPKSSAIKLIDFGST--TFEH------------Q---DHSYVVSTRHYRAPEVILGLGWNYPCDLW  302 (433)
Q Consensus       246 ~~~~~~~------~~~~~~~~kl~Dfg~a--~~~~------------~---~~~~~~gt~~y~aPE~~~~~~~~~~~Diw  302 (433)
                      .......      .-......+-.||...  ....            .   -....+|||.|||||++.+..|+..+|+|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwW  372 (550)
T KOG0605|consen  293 KKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWW  372 (550)
T ss_pred             hhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHH
Confidence            3221110      0001112344455421  0000            0   01126999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchh
Q 013941          303 SVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN  382 (433)
Q Consensus       303 SlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (433)
                      |||||+||||.|.+||.+.+..+....|.+....+                      .+|.                   
T Consensus       373 SLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l----------------------~fP~-------------------  411 (550)
T KOG0605|consen  373 SLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETL----------------------KFPE-------------------  411 (550)
T ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhc----------------------cCCC-------------------
Confidence            99999999999999999999998888887653211                      1111                   


Q ss_pred             hhhhccCCchHHHHHHHHHhcccCCCCCCC---HHHHhcCCCCCCC
Q 013941          383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLK---AREALRHPFFTRD  425 (433)
Q Consensus       383 ~~~~~~~~~~~~l~~li~~~L~~dP~~R~t---a~ell~hp~f~~~  425 (433)
                           ....+.++.|||.+||. ||++|+.   ++||.+||||++-
T Consensus       412 -----~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v  451 (550)
T KOG0605|consen  412 -----EVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGV  451 (550)
T ss_pred             -----cCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccccC
Confidence                 12346799999999999 9999984   9999999999963

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-52  Score=398.44  Aligned_cols=253  Identities=31%  Similarity=0.485  Sum_probs=218.2

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc-----h-hhHHHHHHHHHHHHHHH-hCCCCCcceeEecce
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-----N-KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNW  161 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~-~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~  161 (433)
                      ...++|.+.+.||+|+||+|++|.+..+++.||+|++.+.     . ...+.+.+|+.+++++. |+||     ++++++
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI-----~~l~ev   88 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNI-----IRLLEV   88 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCE-----eEEEEE
Confidence            3456899999999999999999999999999999987653     1 23456668999999999 7766     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      +.....+|+||||| ||+|.+++...+  .+.+..++.++.||++|++|||++||+||||||+|||++.+          
T Consensus        89 ~~t~~~~~ivmEy~~gGdL~~~i~~~g--~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~----------  156 (370)
T KOG0583|consen   89 FATPTKIYIVMEYCSGGDLFDYIVNKG--RLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGN----------  156 (370)
T ss_pred             EecCCeEEEEEEecCCccHHHHHHHcC--CCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCC----------
Confidence            99999999999999 899999999854  89999999999999999999999999999999999999764          


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccc---cCCCcccccCCcccchhhhhCCC-CC-ccchHHHHHHHHHHHHhCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE---HQDHSYVVSTRHYRAPEVILGLG-WN-YPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~---~~~~~~~~gt~~y~aPE~~~~~~-~~-~~~DiwSlG~il~el~~g~  315 (433)
                                      ...+||+|||++...   .....+.+||+.|+|||++.+.. |+ .++||||+||+||.|++|.
T Consensus       157 ----------------~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~  220 (370)
T KOG0583|consen  157 ----------------EGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGR  220 (370)
T ss_pred             ----------------CCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCC
Confidence                            046788888888766   23445679999999999999987 86 8999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc-hHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS-AGD  394 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  394 (433)
                      .||...+.......|.+....+|                                                  ..+ +.+
T Consensus       221 ~PF~d~~~~~l~~ki~~~~~~~p--------------------------------------------------~~~~S~~  250 (370)
T KOG0583|consen  221 LPFDDSNVPNLYRKIRKGEFKIP--------------------------------------------------SYLLSPE  250 (370)
T ss_pred             CCCCCccHHHHHHHHhcCCccCC--------------------------------------------------CCcCCHH
Confidence            99998776666665544333333                                                  223 779


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          395 LIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      +++||.+||..||.+|+|+.++++||||+.
T Consensus       251 ~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  251 ARSLIEKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             HHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence            999999999999999999999999999998

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-54  Score=367.41  Aligned_cols=260  Identities=25%  Similarity=0.420  Sum_probs=227.5

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEecc---chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.+.|++.+.||+|.|+.|+++.+..+|+.+|+|+++-   .....+.+.+|+.|-+.|+||+|     +++++.+...
T Consensus         8 ~f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~I-----vrL~~ti~~~   82 (355)
T KOG0033|consen    8 KFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNI-----VRLHDSIQEE   82 (355)
T ss_pred             ccchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcE-----eehhhhhccc
Confidence            356789999999999999999999999999999998863   22356788899999999999888     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +..|||+|++ |++|..-+-.+.  .+++..+-.+++||+.||.|+|.+||||||+||+|+|+.+.              
T Consensus        83 ~~~ylvFe~m~G~dl~~eIV~R~--~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK--------------  146 (355)
T KOG0033|consen   83 SFHYLVFDLVTGGELFEDIVARE--FYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASK--------------  146 (355)
T ss_pred             ceeEEEEecccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeec--------------
Confidence            9999999999 999976665543  68999999999999999999999999999999999999664              


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                ++...+||+|||+|.......  ...+||+.|||||++...+|+..+|||+.|||||-|+.|.+||.+.+
T Consensus       147 ----------~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~  216 (355)
T KOG0033|consen  147 ----------AKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED  216 (355)
T ss_pred             ----------cCCCceeecccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCcc
Confidence                      245578999999998766332  33689999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ....++.|.+.-..+|.                                              ..++.++++.++||++|
T Consensus       217 ~~rlye~I~~g~yd~~~----------------------------------------------~~w~~is~~Ak~LvrrM  250 (355)
T KOG0033|consen  217 QHRLYEQIKAGAYDYPS----------------------------------------------PEWDTVTPEAKSLIRRM  250 (355)
T ss_pred             HHHHHHHHhccccCCCC----------------------------------------------cccCcCCHHHHHHHHHH
Confidence            88888888775544442                                              12456788999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCC
Q 013941          403 LRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |..||++|+|+.|+|+|||+.+.
T Consensus       251 L~~dP~kRIta~EAL~HpWi~~r  273 (355)
T KOG0033|consen  251 LTVNPKKRITADEALKHPWICNR  273 (355)
T ss_pred             hccChhhhccHHHHhCCchhcch
Confidence            99999999999999999999874

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=2.1e-50  Score=402.47  Aligned_cols=326  Identities=38%  Similarity=0.675  Sum_probs=245.7

Q ss_pred             CceeeecCCcc---CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCC-Ccce
Q 013941           80 GHYVFAIGENL---TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG-GTRC  155 (433)
Q Consensus        80 ~~~~~~~~~~~---~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~-~~~~  155 (433)
                      +.+....++.+   .++|+++++||+|+||+||+|.+..+++.||||+++...........|+.+++.+.|.++. +.++
T Consensus       114 ~~~~~~~~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i  193 (467)
T PTZ00284        114 GHFYVVLGEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPL  193 (467)
T ss_pred             CceeEecCCccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcce
Confidence            44555556554   5789999999999999999999999999999999976555555677899999999887653 3567


Q ss_pred             eEecceeccC-CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcc
Q 013941          156 VQIRNWFDYR-NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYV  233 (433)
Q Consensus       156 v~~~~~~~~~-~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~  233 (433)
                      +.+++++... +++|+|||+++++|.+++.+.+  .+++..++.++.||+.||+|||+ .|||||||||+|||++.++..
T Consensus       194 ~~i~~~~~~~~~~~~iv~~~~g~~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~  271 (467)
T PTZ00284        194 MKIQRYFQNETGHMCIVMPKYGPCLLDWIMKHG--PFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTV  271 (467)
T ss_pred             eeeEEEEEcCCceEEEEEeccCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcc
Confidence            8888888764 6899999999999999998764  79999999999999999999998 599999999999999876532


Q ss_pred             cccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh
Q 013941          234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       234 ~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  313 (433)
                      .  ++....         ........+||+|||.+..........+||+.|+|||++.+..++.++|||||||++|||++
T Consensus       272 ~--~~~~~~---------~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~ellt  340 (467)
T PTZ00284        272 V--DPVTNR---------ALPPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYT  340 (467)
T ss_pred             c--cccccc---------ccCCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHh
Confidence            1  111000         00123346999999988765555566789999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhh-hhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRR-AEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      |+.||.+.+..+.+..+...++.+|..+...+... ...++.........   .................      ...+
T Consensus       341 G~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~  411 (467)
T PTZ00284        341 GKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPC---TDPKHLARIARARPVRE------VIRD  411 (467)
T ss_pred             CCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhccccccc---CCHHHHHhhhcccchhh------hhch
Confidence            99999999999999999999999998776543211 11222211111100   00011111000000000      0124


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ..+.|||.+||++||++|||++|+|+||||.+...
T Consensus       412 ~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~~~  446 (467)
T PTZ00284        412 DLLCDLIYGLLHYDRQKRLNARQMTTHPYVLKYYP  446 (467)
T ss_pred             HHHHHHHHHhCCcChhhCCCHHHHhcCccccccCC
Confidence            57889999999999999999999999999998543

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=3.5e-52  Score=374.57  Aligned_cols=285  Identities=32%  Similarity=0.549  Sum_probs=232.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh---hHHHHHHHHHHHHHHHhCC-CCCcceeEecceeccCC-
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHD-IGGTRCVQIRNWFDYRN-  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~~~~-i~~~~~v~~~~~~~~~~-  166 (433)
                      ..|..+++||+|+||+||+|+++.+|+.||+|.++-...   ......+|+.+++.++|.+ |     +.+++++...+ 
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~i-----v~L~dv~~~~~~   85 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHI-----VRLHDVIHTSNN   85 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcce-----EEEEeeeeeccc
Confidence            458888999999999999999999999999999975433   4567889999999999987 6     99999998876 


Q ss_pred             -----eEEEEEccCCCCHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          167 -----HICIVFEKLGPSLYDFLRKNSY--RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       167 -----~~~lv~e~~~~~L~~~l~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                           .+++|+||+..+|..++.....  ..++...++.+++||+.||+|||++||+||||||.||||++.|        
T Consensus        86 ~~~~~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G--------  157 (323)
T KOG0594|consen   86 HRGIGKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSG--------  157 (323)
T ss_pred             ccccceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCC--------
Confidence                 8999999999999999987653  3578899999999999999999999999999999999997665        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~  315 (433)
                                         .+||+|||+|+....+   .+..++|.+|+|||++.+. .|+..+||||+|||++||++++
T Consensus       158 -------------------~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~  218 (323)
T KOG0594|consen  158 -------------------VLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRR  218 (323)
T ss_pred             -------------------cEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCC
Confidence                               5677888877654422   3445899999999999997 6999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      ..|.+..+.+++..|.+.+|.+.+..                   ||.....+.... .+.....+.......+..+++.
T Consensus       219 ~LFpG~se~~ql~~If~~lGtP~e~~-------------------Wp~v~~~~~~k~-~f~~~~~~~~l~~~~~~~~~~~  278 (323)
T KOG0594|consen  219 PLFPGDSEIDQLFRIFRLLGTPNEKD-------------------WPGVSSLPDYKA-PFPKWPGPKDLSSILPKLDPDG  278 (323)
T ss_pred             CCCCCCcHHHHHHHHHHHcCCCCccC-------------------CCCccccccccc-cCcCCCCccchHHhccccCccH
Confidence            99999999999999999999877543                   332222111110 0001111222223334445689


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      .+++.+||+.+|.+|.||+.+|.||||.+...+
T Consensus       279 ~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~~  311 (323)
T KOG0594|consen  279 IELLSKLLQYDPAKRISAKGALTHPYFSELPEK  311 (323)
T ss_pred             HHHHHHHhccCcccCcCHHHHhcChhhcccccc
Confidence            999999999999999999999999999987543

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.7e-52  Score=378.82  Aligned_cols=281  Identities=26%  Similarity=0.374  Sum_probs=232.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ..|++++.||.|.-|+||+|+...++..+|+|++.+..    +....+..|-+||+.+.||.+     +.++..|+.++.
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFl-----PTLYa~fet~~~  151 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFL-----PTLYASFETDKY  151 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCcc-----chhhheeeccce
Confidence            56999999999999999999999999999999998643    233456679999999999988     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+||||| ||+|..+++++..+.|++..++.++..++.||+|||-.|||+|||||+||||.++|++.++||.++.+...
T Consensus       152 ~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~  231 (459)
T KOG0610|consen  152 SCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPV  231 (459)
T ss_pred             eEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCC
Confidence            99999999 99999999999989999999999999999999999999999999999999999999999999999876643


Q ss_pred             CCCcccCCC-----CCCC---eee----------------ecCCC--------CccccCCCcccccCCcccchhhhhCCC
Q 013941          247 DGSYFKNLP-----KSSA---IKL----------------IDFGS--------TTFEHQDHSYVVSTRHYRAPEVILGLG  294 (433)
Q Consensus       247 ~~~~~~~~~-----~~~~---~kl----------------~Dfg~--------a~~~~~~~~~~~gt~~y~aPE~~~~~~  294 (433)
                      ..+.....+     .+..   +.+                .|++.        |...+.....++||-.|.|||++.|..
T Consensus       232 ~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~G  311 (459)
T KOG0610|consen  232 SPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEG  311 (459)
T ss_pred             CCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCC
Confidence            222111100     0000   001                12221        111222334579999999999999999


Q ss_pred             CCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHH
Q 013941          295 WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV  374 (433)
Q Consensus       295 ~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (433)
                      .+.++|+|+|||++|||+.|..||.+.+..+.+..|......+|.                                   
T Consensus       312 HgsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~-----------------------------------  356 (459)
T KOG0610|consen  312 HGSAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIVGQPLKFPE-----------------------------------  356 (459)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHhcCCCcCCC-----------------------------------
Confidence            999999999999999999999999999998888777654333332                                   


Q ss_pred             HHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCC----HHHHhcCCCCCCC
Q 013941          375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLK----AREALRHPFFTRD  425 (433)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~t----a~ell~hp~f~~~  425 (433)
                                   ...++.+++|||+++|.+||++|+.    |.||.+||||+.-
T Consensus       357 -------------~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gV  398 (459)
T KOG0610|consen  357 -------------EPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGV  398 (459)
T ss_pred             -------------CCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCC
Confidence                         1245679999999999999999998    9999999999963

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-53  Score=368.83  Aligned_cols=241  Identities=32%  Similarity=0.496  Sum_probs=207.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEecc---chhhHHHHHHHHHHHHHHHhCCCCCcceeEecc-eeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDIGGTRCVQIRN-WFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~-~~~~~~~  167 (433)
                      ..|+|.++||+|+||+||++++..+|+.||.|.++-   +.+.++....|+.+|++|+|+||     |++++ .|..++.
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNI-----VqYy~~~f~~~~e   93 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNI-----VQYYAHSFIEDNE   93 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchH-----HHHHHHhhhccch
Confidence            459999999999999999999999999999998873   34567788899999999999988     99988 5655555


Q ss_pred             -EEEEEccC-CCCHHHHHH--hcCCCCCCHHHHHHHHHHHHHHHHHHHh--CC--cEecCCCCCcEEEeeCCcccccCcc
Q 013941          168 -ICIVFEKL-GPSLYDFLR--KNSYRSFPIDLVRELGRQLLESVAFMHE--LR--LIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       168 -~~lv~e~~-~~~L~~~l~--~~~~~~l~~~~~~~i~~qi~~aL~~LH~--~~--ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                       ++||||+| +|+|...++  +...+.+++..+++++.|++.||.++|+  ..  |+||||||.||+++.+|        
T Consensus        94 vlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~g--------  165 (375)
T KOG0591|consen   94 VLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANG--------  165 (375)
T ss_pred             hhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCC--------
Confidence             99999999 999999987  3344679999999999999999999999  44  99999999999997655        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                         .+||+|||+++......   .+.+|||+||+||.+.+.+|+++|||||+||++|||+.-++
T Consensus       166 -------------------vvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~  226 (375)
T KOG0591|consen  166 -------------------VVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQS  226 (375)
T ss_pred             -------------------ceeeccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCC
Confidence                               68899999988776554   34799999999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcC-CChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          317 LFQTHENLEHLAMMERVLGP-LPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      ||.+.+-.+....|.+.-.+ +|.                                                 +.+|.++
T Consensus       227 PF~g~n~~~L~~KI~qgd~~~~p~-------------------------------------------------~~YS~~l  257 (375)
T KOG0591|consen  227 PFYGDNLLSLCKKIEQGDYPPLPD-------------------------------------------------EHYSTDL  257 (375)
T ss_pred             CcccccHHHHHHHHHcCCCCCCcH-------------------------------------------------HHhhhHH
Confidence            99999777777777654221 221                                                 2457899


Q ss_pred             HHHHHHhcccCCCCCCCH
Q 013941          396 IDLLQGLLRYDPAERLKA  413 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta  413 (433)
                      ..||..|+..||+.||+.
T Consensus       258 ~~li~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  258 RELINMCIAVDPEQRPDT  275 (375)
T ss_pred             HHHHHHHccCCcccCCCc
Confidence            999999999999999985

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=6.8e-53  Score=394.90  Aligned_cols=252  Identities=29%  Similarity=0.525  Sum_probs=218.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|.+.+.||+|+||.||+|+.+.+.+.||+|.+.+..   +....+.+|++|++.++|+||     +.++++|+...++
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpni-----v~m~esfEt~~~~   76 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNI-----VEMLESFETSAHL   76 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcch-----hhHHHhhcccceE
Confidence            57999999999999999999999999999999997543   344567889999999999988     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      |+|.|||-|+|..++...+  .++++.++.++.|++.||.|||+.+|+|||+||.|||+...|                 
T Consensus        77 ~vVte~a~g~L~~il~~d~--~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~-----------------  137 (808)
T KOG0597|consen   77 WVVTEYAVGDLFTILEQDG--KLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGG-----------------  137 (808)
T ss_pred             EEEehhhhhhHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCC-----------------
Confidence            9999999669999999876  899999999999999999999999999999999999987665                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .+|+||||+|+......   +.+.||+.|||||++.+.+|+..+|+||||||+||+++|++||....-.+
T Consensus       138 ----------~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~  207 (808)
T KOG0597|consen  138 ----------TLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARSITQ  207 (808)
T ss_pred             ----------ceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHHHHH
Confidence                      56777777776554433   34689999999999999999999999999999999999999998766666


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....|.......|                                                  ...+..+.+||+.+|.+
T Consensus       208 Lv~~I~~d~v~~p--------------------------------------------------~~~S~~f~nfl~gLL~k  237 (808)
T KOG0597|consen  208 LVKSILKDPVKPP--------------------------------------------------STASSSFVNFLQGLLIK  237 (808)
T ss_pred             HHHHHhcCCCCCc--------------------------------------------------ccccHHHHHHHHHHhhc
Confidence            6665544322221                                                  23477899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCcc
Q 013941          406 DPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||.+|+|..+++.|||.++...
T Consensus       238 dP~~RltW~~Ll~HpF~k~~~~  259 (808)
T KOG0597|consen  238 DPAQRLTWTDLLGHPFWKGKIN  259 (808)
T ss_pred             ChhhcccHHHHhcChHHhhhhh
Confidence            9999999999999999987543

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2e-52  Score=398.93  Aligned_cols=250  Identities=28%  Similarity=0.531  Sum_probs=223.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +-|++.+.||.|+.|.|-+|++..||+.+|||++.+.    ......+.+|+.||+.+.|||+     +++++++++..+
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnV-----l~LydVwe~~~~   86 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNV-----LRLYDVWENKQH   86 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCe-----eeeeeeeccCce
Confidence            4599999999999999999999999999999999764    2334567899999999999988     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+|.||+ ||.|++++..++  .+++.++++++.||+.|+.|||..+|+||||||+|+|++..+               
T Consensus        87 lylvlEyv~gGELFdylv~kG--~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~---------------  149 (786)
T KOG0588|consen   87 LYLVLEYVPGGELFDYLVRKG--PLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKN---------------  149 (786)
T ss_pred             EEEEEEecCCchhHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhccc---------------
Confidence            99999999 999999999887  899999999999999999999999999999999999986533               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCC-ccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~-~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                  .+||+|||+|.......  .+.||++.|.|||++.|.+|. .++||||+|||||.|++|+.||.+++-
T Consensus       150 ------------nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNi  217 (786)
T KOG0588|consen  150 ------------NIKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNI  217 (786)
T ss_pred             ------------CEeeeccceeecccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccH
Confidence                        48999999987654432  457999999999999999985 899999999999999999999998887


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ...+.++++....+|                                                  ..++.++++||.+||
T Consensus       218 r~LLlKV~~G~f~MP--------------------------------------------------s~Is~eaQdLLr~ml  247 (786)
T KOG0588|consen  218 RVLLLKVQRGVFEMP--------------------------------------------------SNISSEAQDLLRRML  247 (786)
T ss_pred             HHHHHHHHcCcccCC--------------------------------------------------CcCCHHHHHHHHHHh
Confidence            787877776655544                                                  355889999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCC
Q 013941          404 RYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ..||++|+|.+||++|||+...
T Consensus       248 ~VDp~~RiT~~eI~kHP~l~g~  269 (786)
T KOG0588|consen  248 DVDPSTRITTEEILKHPFLSGY  269 (786)
T ss_pred             ccCccccccHHHHhhCchhhcC
Confidence            9999999999999999999875

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-51  Score=393.99  Aligned_cols=251  Identities=26%  Similarity=0.419  Sum_probs=216.0

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|.++++||+|+||+|++|..+.+++.||||++++..    ...+..+.|..|+....    .||.+++++..|++.+
T Consensus       367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~----~HPFL~~L~~~fQT~~  442 (694)
T KOG0694|consen  367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELAN----RHPFLVNLFSCFQTKE  442 (694)
T ss_pred             ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhc----cCCeEeecccccccCC
Confidence            367999999999999999999999999999999998753    45577788999988887    3355599999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ++|+||||+ ||++..+.+.   ..|++..++.|+..|+.||+|||++||||||||.+|||++.+|+             
T Consensus       443 ~l~fvmey~~Ggdm~~~~~~---~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh-------------  506 (694)
T KOG0694|consen  443 HLFFVMEYVAGGDLMHHIHT---DVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGH-------------  506 (694)
T ss_pred             eEEEEEEecCCCcEEEEEec---ccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCc-------------
Confidence            999999999 8885444433   37999999999999999999999999999999999999988775             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccc---cCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFE---HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                    +||+|||+++..   +...++++||+.|||||++.+..|+.++|+|||||+||||+.|..||.+++
T Consensus       507 --------------~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gdd  572 (694)
T KOG0694|consen  507 --------------VKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDD  572 (694)
T ss_pred             --------------EEecccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence                          566666666532   344567899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      +.+....|...-...|                                                  ..++.++.++|+++
T Consensus       573 Eee~FdsI~~d~~~yP--------------------------------------------------~~ls~ea~~il~~l  602 (694)
T KOG0694|consen  573 EEEVFDSIVNDEVRYP--------------------------------------------------RFLSKEAIAIMRRL  602 (694)
T ss_pred             HHHHHHHHhcCCCCCC--------------------------------------------------CcccHHHHHHHHHH
Confidence            9999888876433332                                                  34477999999999


Q ss_pred             cccCCCCCCC-----HHHHhcCCCCCCC
Q 013941          403 LRYDPAERLK-----AREALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~t-----a~ell~hp~f~~~  425 (433)
                      |.+||++|+.     +++|.+||||++.
T Consensus       603 l~k~p~kRLG~~e~d~~~i~~hpFFr~i  630 (694)
T KOG0694|consen  603 LRKNPEKRLGSGERDAEDIKKHPFFRSI  630 (694)
T ss_pred             hccCcccccCCCCCCchhhhhCCccccC
Confidence            9999999995     6899999999974

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-52  Score=391.16  Aligned_cols=253  Identities=28%  Similarity=0.433  Sum_probs=218.1

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      -...|....+||+|+.|.||.|+...+++.||||.+..... .++.+.+|+.+|+..+|+||     |.+++.|-..+.+
T Consensus       271 P~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~Ni-----Vnfl~Sylv~deL  345 (550)
T KOG0578|consen  271 PRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNI-----VNFLDSYLVGDEL  345 (550)
T ss_pred             hhhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHH-----HHHHHHhccccee
Confidence            34579999999999999999999999999999999986543 45667799999999999888     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ ||+|.+.+...   .++|.++..|++++++||+|||.+||+|||||.+|||++.+|.               
T Consensus       346 WVVMEym~ggsLTDvVt~~---~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~---------------  407 (550)
T KOG0578|consen  346 WVVMEYMEGGSLTDVVTKT---RMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGS---------------  407 (550)
T ss_pred             EEEEeecCCCchhhhhhcc---cccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCc---------------
Confidence            9999999 99999999876   4999999999999999999999999999999999999987774               


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                  +||+|||++.....   ...+.+||++|||||++....|++++||||||++++||+.|.+||-..+..
T Consensus       408 ------------vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~Pl  475 (550)
T KOG0578|consen  408 ------------VKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPL  475 (550)
T ss_pred             ------------EEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChH
Confidence                        55666665543322   346689999999999999999999999999999999999999999877766


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      ..+..|...                                               ........+.+|..+++||.+||+
T Consensus       476 rAlyLIa~n-----------------------------------------------g~P~lk~~~klS~~~kdFL~~cL~  508 (550)
T KOG0578|consen  476 RALYLIATN-----------------------------------------------GTPKLKNPEKLSPELKDFLDRCLV  508 (550)
T ss_pred             HHHHHHhhc-----------------------------------------------CCCCcCCccccCHHHHHHHHHHhh
Confidence            665555321                                               112234456779999999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~  424 (433)
                      .|+.+|++|.|||+||||+.
T Consensus       509 ~dv~~RasA~eLL~HpFl~~  528 (550)
T KOG0578|consen  509 VDVEQRASAKELLEHPFLKM  528 (550)
T ss_pred             cchhcCCCHHHHhcChhhhh
Confidence            99999999999999999964

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-50  Score=370.31  Aligned_cols=343  Identities=31%  Similarity=0.565  Sum_probs=267.7

Q ss_pred             CCCCceeeecCCccC-CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCC---CCC
Q 013941           77 DKDGHYVFAIGENLT-PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD---IGG  152 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~---i~~  152 (433)
                      ..+|++++.+|+.+. +||.+.++||.|.|++||+|.|..+.+.||+|+++......+..+.||.+|++++...   ...
T Consensus        62 ~kGGYHpV~IGD~F~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~  141 (590)
T KOG1290|consen   62 RKGGYHPVRIGDVFNGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGK  141 (590)
T ss_pred             hcCCCceeeccccccCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            457899999999998 9999999999999999999999999999999999988888899999999999998654   455


Q ss_pred             cceeEecceecc----CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEE
Q 013941          153 TRCVQIRNWFDY----RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILL  227 (433)
Q Consensus       153 ~~~v~~~~~~~~----~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli  227 (433)
                      .++|++++.|..    +.|+|||+|++|.+|..+|....++.++...++.|++||+.||.|||. .||||-||||+|||+
T Consensus       142 ~~VV~LlD~FkhsGpNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl  221 (590)
T KOG1290|consen  142 KCVVQLLDHFKHSGPNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLL  221 (590)
T ss_pred             ceeeeeeccceecCCCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeee
Confidence            788999999975    569999999999999999999888999999999999999999999995 699999999999999


Q ss_pred             eeCCc-----------ccc-----c-----C--------------------------------------c----------
Q 013941          228 VSAEY-----------VKV-----P-----D--------------------------------------Y----------  238 (433)
Q Consensus       228 ~~~~~-----------~~l-----~-----d--------------------------------------~----------  238 (433)
                      .....           ++.     .     +                                      .          
T Consensus       222 ~~~e~~~~~~~~~a~e~~~~~p~~s~s~~~t~~d~~~~~~~~~~s~~~~k~~~kk~~r~~~~~~~~l~~~~~~~~~~~~~  301 (590)
T KOG1290|consen  222 CSTEIDPAKDAREAGEATTSLPKMSPSAVSTRPDALQRMAAEPMSKSKFKKMKKKLKRQAKKLEASLAGLEGIEEEPNQE  301 (590)
T ss_pred             eccccchhhhhhhhccccccCCCCCcccccccccccchhhccccchhhHHHHHHHHhhhhhhhhhhhccccccccccccc
Confidence            65410           000     0     0                                      0          


Q ss_pred             --------ccc----ccCCCC------C-------C---------------------------ccc--------------
Q 013941          239 --------KFL----SRSSKD------G-------S---------------------------YFK--------------  252 (433)
Q Consensus       239 --------~~~----~~~~~~------~-------~---------------------------~~~--------------  252 (433)
                              ..-    ..+...      +       .                           ...              
T Consensus       302 s~n~~~~~n~~~~~v~~~~~~~~~~~~~~~~n~~~k~~e~~~~~~~sl~~~~~~~~~t~~~~~~~s~~s~~~~~~n~~v~  381 (590)
T KOG1290|consen  302 SYNNEPRINGNESTVERSTLEEDSNENGNRENLPIKSPENFRGNNTSLPESQLRDSATPSDGSLSSPSSPGTIASNPLVN  381 (590)
T ss_pred             ccccccCCCccccchhhcccccccccccCCccccccCccccccccccccchhcccccccccccccCcCCccccccccccC
Confidence                    000    000000      0       0                           000              


Q ss_pred             ----CCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC------CC
Q 013941          253 ----NLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT------HE  322 (433)
Q Consensus       253 ----~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~------~~  322 (433)
                          .-.....+||+|||.|.+....-+.-+.|..|+|||++.+..|+..+||||++|++|||+||...|..      ..
T Consensus       382 p~~~~~~~di~vKIaDlGNACW~~khFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~r  461 (590)
T KOG1290|consen  382 PDIPLPECDIRVKIADLGNACWVHKHFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSR  461 (590)
T ss_pred             CCCCCCccceeEEEeeccchhhhhhhhchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCc
Confidence                01123468999999999988777777899999999999999999999999999999999999999953      34


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      +.++++.|..++|.+|..+..........|-+.|.....-....++.. .-+.+       .-....+.+.++.+||.-|
T Consensus       462 DEDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~-~VL~e-------KY~~s~e~A~~fsdFL~Pm  533 (590)
T KOG1290|consen  462 DEDHIALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLY-EVLIE-------KYEWSEEDAQQFSDFLSPM  533 (590)
T ss_pred             cHHHHHHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHH-HHHHH-------HhCCCHHHHHHHHHHHHHH
Confidence            678999999999999998877665444444444433333222222111 11111       1122334467899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          403 LRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      |+++|++|+||.++|+|||+.....
T Consensus       534 Lef~PeKR~tA~~cl~hPwLn~~~~  558 (590)
T KOG1290|consen  534 LEFDPEKRPTAAQCLKHPWLNPVAG  558 (590)
T ss_pred             HhcCccccccHHHHhcCccccCCCC
Confidence            9999999999999999999996543

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-50  Score=369.85  Aligned_cols=270  Identities=24%  Similarity=0.361  Sum_probs=220.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +.|++...||.|..++||+|+...+++.||||++....  ...+.+.+|+..+..++||||     ++++..|..+..+|
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNI-----v~~~~sFvv~~~LW  100 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNI-----VTYHCSFVVDSELW  100 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCc-----ceEEEEEEecceeE
Confidence            45999999999999999999999999999999997433  335778899999999999988     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||.|| +|++.+++...-...++|..+..|++++++||.|||.+|.||||||+.||||+++|.+||+|||+..      
T Consensus       101 vVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa------  174 (516)
T KOG0582|consen  101 VVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSA------  174 (516)
T ss_pred             EeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeee------
Confidence            999999 9999999997766679999999999999999999999999999999999999999988888888753      


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC--CCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  -|.|-|..... .. .+++||++|||||++...  .|+.|+||||||++..||.+|..||........
T Consensus       175 ------------~l~~~G~R~~~-rf-~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkv  240 (516)
T KOG0582|consen  175 ------------SLFDSGDRQVT-RF-NTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKV  240 (516)
T ss_pred             ------------eecccCceeeE-ee-ccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHH
Confidence                        33333311111 11 456999999999996543  699999999999999999999999988776654


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      +.  ..+.+.+|.....                                      .+..+....++.+++.+|..||++|
T Consensus       241 Ll--~tLqn~pp~~~t~--------------------------------------~~~~d~~k~~~ksf~e~i~~CL~kD  280 (516)
T KOG0582|consen  241 LL--LTLQNDPPTLLTS--------------------------------------GLDKDEDKKFSKSFREMIALCLVKD  280 (516)
T ss_pred             HH--HHhcCCCCCcccc--------------------------------------cCChHHhhhhcHHHHHHHHHHhhcC
Confidence            43  2333444321100                                      0001111234568999999999999


Q ss_pred             CCCCCCHHHHhcCCCCCCCc
Q 013941          407 PAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       407 P~~R~ta~ell~hp~f~~~~  426 (433)
                      |++||||+++|+|+||++..
T Consensus       281 P~kRptAskLlkh~FFk~~k  300 (516)
T KOG0582|consen  281 PSKRPTASKLLKHAFFKKAK  300 (516)
T ss_pred             cccCCCHHHHhccHHHhhcc
Confidence            99999999999999999753

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2e-50  Score=371.75  Aligned_cols=264  Identities=25%  Similarity=0.372  Sum_probs=211.6

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh---------------hHHHHHHHHHHHHHHHhCCCCCc
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---------------YREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------------~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      ..-++|++++.||+|.||.|-+|++..+++.||||++.+...               ..+...+||.||+++.|+|+   
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nV---  170 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNV---  170 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCe---
Confidence            345789999999999999999999999999999999975321               22578899999999999888   


Q ss_pred             ceeEecceecc--CCeEEEEEccC-CCCHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          154 RCVQIRNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRS-FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       154 ~~v~~~~~~~~--~~~~~lv~e~~-~~~L~~~l~~~~~~~-l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                        |+++++.++  .+.+|||+||| .|.+...=..   .. +++.+++.|+++++.||+|||.+|||||||||+|+|+++
T Consensus       171 --V~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d---~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~  245 (576)
T KOG0585|consen  171 --VKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPD---KPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSS  245 (576)
T ss_pred             --eEEEEeecCcccCceEEEEEeccCCccccCCCC---cccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcC
Confidence              999999987  56899999999 7766543222   23 899999999999999999999999999999999999988


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCC----CCccchHHHHH
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG----WNYPCDLWSVG  305 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DiwSlG  305 (433)
                      +|++||+|||.+........                   ...+......+||+.|+|||.+.+..    .+.+.||||+|
T Consensus       246 ~g~VKIsDFGVs~~~~~~~~-------------------~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalG  306 (576)
T KOG0585|consen  246 DGTVKISDFGVSNEFPQGSD-------------------EGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALG  306 (576)
T ss_pred             CCcEEeeccceeeecccCCc-------------------cccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhh
Confidence            88666555554332211100                   00001112259999999999998732    35889999999


Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          306 CILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       306 ~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      |+||+|+.|+.||-+....+....|....-.+|.                                              
T Consensus       307 VTLYCllfG~~PF~~~~~~~l~~KIvn~pL~fP~----------------------------------------------  340 (576)
T KOG0585|consen  307 VTLYCLLFGQLPFFDDFELELFDKIVNDPLEFPE----------------------------------------------  340 (576)
T ss_pred             hhHHHhhhccCCcccchHHHHHHHHhcCcccCCC----------------------------------------------
Confidence            9999999999999998888888888765433332                                              


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                        .+++...++|||.+||.+||++|++..+|..|||..+...
T Consensus       341 --~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~g~  380 (576)
T KOG0585|consen  341 --NPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRDGD  380 (576)
T ss_pred             --cccccHHHHHHHHHHhhcChhheeehhhheecceeccCCC
Confidence              1234678999999999999999999999999999998743

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-50  Score=382.28  Aligned_cols=266  Identities=32%  Similarity=0.513  Sum_probs=230.7

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHHHHHHHH-hCCCCCcceeEecce
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEIDVLQRLA-RHDIGGTRCVQIRNW  161 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~  161 (433)
                      ...+...|++.+.||+|.||.||+|+++.+|+.+|+|++.+...    ..+.+.+|+.+|+++. |+|+     |.+++.
T Consensus        30 ~~~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpni-----v~l~~~  104 (382)
T KOG0032|consen   30 SEDIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNI-----VQLKDA  104 (382)
T ss_pred             cccccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCE-----EEEEEE
Confidence            45666789999999999999999999999999999999975432    3468899999999998 7776     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      |++...+++|||+| ||.|.+.+...   .+++..+..++.||+.|++|||+.||+||||||+|+|+....         
T Consensus       105 ~e~~~~~~lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~---------  172 (382)
T KOG0032|consen  105 FEDPDSVYLVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKD---------  172 (382)
T ss_pred             EEcCCeEEEEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeecccc---------
Confidence            99999999999999 99999999876   399999999999999999999999999999999999996542         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                    .....+|++|||++.....  .....+||+.|+|||++....|+..+||||+||++|.|++|..||
T Consensus       173 --------------~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF  238 (382)
T KOG0032|consen  173 --------------EGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPF  238 (382)
T ss_pred             --------------CCCCcEEEeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCC
Confidence                          1235799999999988766  345579999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.+.......+.+.-..++                                              ...++.++..+++|
T Consensus       239 ~~~~~~~~~~~i~~~~~~f~----------------------------------------------~~~w~~is~~akd~  272 (382)
T KOG0032|consen  239 WGETEFEIFLAILRGDFDFT----------------------------------------------SEPWDDISESAKDF  272 (382)
T ss_pred             cCCChhHHHHHHHcCCCCCC----------------------------------------------CCCccccCHHHHHH
Confidence            99888777766554322221                                              22345668899999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      |.+||..||.+|+||.++|+|||++.....+
T Consensus       273 i~~ll~~dp~~R~ta~~~L~HpWi~~~~~~~  303 (382)
T KOG0032|consen  273 IRKLLEFDPRKRLTAAQALQHPWIKSIGEAT  303 (382)
T ss_pred             HHHhcccCcccCCCHHHHhcCccccCCcccc
Confidence            9999999999999999999999999864433

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7e-51  Score=372.64  Aligned_cols=254  Identities=32%  Similarity=0.483  Sum_probs=205.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC--eE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN--HI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~--~~  168 (433)
                      .+|...+.||+|+||.||++.+..+|+.+|||.+...+. ..+.+.+|+.+|.+++|++|     |++++......  .+
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~I-----V~~~G~~~~~~~~~~   91 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNI-----VQYYGSSSSRENDEY   91 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCE-----EeeCCccccccCeee
Confidence            358889999999999999999999999999999865421 14567899999999998877     99999755544  69


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee-CCcccccCccccccCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS-AEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~-~~~~~l~d~~~~~~~~~  246 (433)
                      ++.|||+ +|+|.+++...++ .+++..++.+.+||++||.|||++|||||||||+|||++. ++               
T Consensus        92 ~i~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~---------------  155 (313)
T KOG0198|consen   92 NIFMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNG---------------  155 (313)
T ss_pred             EeeeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCC---------------
Confidence            9999999 9999999998876 7999999999999999999999999999999999999976 34               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccC------CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQ------DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~------~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                  .+||+|||.+.....      ......||+.|||||++... ...+++|||||||++.||+||..||.
T Consensus       156 ------------~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~  223 (313)
T KOG0198|consen  156 ------------DVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWS  223 (313)
T ss_pred             ------------eEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcch
Confidence                        567777776664442      12346899999999999963 33469999999999999999999997


Q ss_pred             CC-ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          320 TH-ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       320 ~~-~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .. .....+..+.... ..                                               ...+..++.++++|
T Consensus       224 ~~~~~~~~~~~ig~~~-~~-----------------------------------------------P~ip~~ls~~a~~F  255 (313)
T KOG0198|consen  224 EFFEEAEALLLIGRED-SL-----------------------------------------------PEIPDSLSDEAKDF  255 (313)
T ss_pred             hhcchHHHHHHHhccC-CC-----------------------------------------------CCCCcccCHHHHHH
Confidence            63 2222111111100 00                                               12334568899999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      |.+||..||++||||+++|+|||.+++.
T Consensus       256 l~~C~~~~p~~Rpta~eLL~hpf~~~~~  283 (313)
T KOG0198|consen  256 LRKCFKRDPEKRPTAEELLEHPFLKQNS  283 (313)
T ss_pred             HHHHhhcCcccCcCHHHHhhChhhhccc
Confidence            9999999999999999999999998754

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.3e-51  Score=366.35  Aligned_cols=279  Identities=29%  Similarity=0.549  Sum_probs=225.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC--C---
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR--N---  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~--~---  166 (433)
                      -.|.-.+.+|.|+||.||+|....+++.||||.+-.+...   -.+|+++|+.+.|+||     |++.-+|...  .   
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~---knrEl~im~~l~HpNI-----V~L~~~f~~~~~~d~~   95 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY---KNRELQIMRKLDHPNI-----VRLLYFFSSSTESDEV   95 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc---CcHHHHHHHhcCCcCe-----eeEEEEEEecCCCchh
Confidence            3589999999999999999999999999999988654432   3469999999999888     9988887642  2   


Q ss_pred             eEEEEEccCCCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          167 HICIVFEKLGPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       167 ~~~lv~e~~~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ...+||||+..+|.++++..  .+..++.-.++-++.||++||.|||+.||+||||||.|||++.               
T Consensus        96 ~lnlVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~---------------  160 (364)
T KOG0658|consen   96 YLNLVLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDP---------------  160 (364)
T ss_pred             HHHHHHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcC---------------
Confidence            56799999999999999842  2247899999999999999999999999999999999999975               


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                 ..+.+||||||+|+.....  ..+...|..|+|||.+.|. .|+.+.||||.||++.||+-|++.|.|.
T Consensus       161 -----------~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~  229 (364)
T KOG0658|consen  161 -----------DTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGD  229 (364)
T ss_pred             -----------CCCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCC
Confidence                       4567999999999876543  3446789999999999986 6999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +..+++..|.+++|.+..+.+........       ...+|....      ..|        ..-.....++++.+|+.+
T Consensus       230 s~~dQL~eIik~lG~Pt~e~I~~mn~~y~-------~~~~p~ik~------~~~--------~~~~~~~~~~d~~dll~~  288 (364)
T KOG0658|consen  230 SSVDQLVEIIKVLGTPTREDIKSMNPNYT-------EFKFPQIKA------HPW--------HKVFFKRLPPDALDLLSK  288 (364)
T ss_pred             CHHHHHHHHHHHhCCCCHHHHhhcCcccc-------cccCccccc------ccc--------eeecccCCCHHHHHHHHH
Confidence            99999999999999988755443221110       000110000      000        001234567899999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +|+++|.+|.++.|++.||||..-
T Consensus       289 ~L~Y~P~~R~~~~~~l~h~fFdel  312 (364)
T KOG0658|consen  289 LLQYSPSKRLSALEALAHPFFDEL  312 (364)
T ss_pred             HhccChhhcCCHHHHhcchhhHHh
Confidence            999999999999999999999863

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.4e-51  Score=346.40  Aligned_cols=252  Identities=27%  Similarity=0.460  Sum_probs=224.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|-||.||+|+.+.++-.||+|++.+..    ....++.+|++|...|+||||     .+++++|.+...
T Consensus        22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpni-----lrlY~~fhd~~r   96 (281)
T KOG0580|consen   22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNI-----LRLYGYFHDSKR   96 (281)
T ss_pred             hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccH-----Hhhhhheeccce
Confidence            45999999999999999999999999999999997644    334567789999999999888     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +||++||. +|+|...|+......+++..+..++.|++.||.|+|.++||||||||+|+|++..|               
T Consensus        97 iyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~---------------  161 (281)
T KOG0580|consen   97 IYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAG---------------  161 (281)
T ss_pred             eEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCC---------------
Confidence            99999999 99999999976667899999999999999999999999999999999999986655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCcccc-CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEH-QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                  .+|++|||.+.... ....+.+||..|.+||+..+..++..+|+|++|++.||++.|.+||......+
T Consensus       162 ------------~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~e  229 (281)
T KOG0580|consen  162 ------------ELKIADFGWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSE  229 (281)
T ss_pred             ------------CeeccCCCceeecCCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHH
Confidence                        67889999887663 44567899999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....|.+.--.+|                                                  ..++.++.|||.+||.+
T Consensus       230 tYkrI~k~~~~~p--------------------------------------------------~~is~~a~dlI~~ll~~  259 (281)
T KOG0580|consen  230 TYKRIRKVDLKFP--------------------------------------------------STISGGAADLISRLLVK  259 (281)
T ss_pred             HHHHHHHccccCC--------------------------------------------------cccChhHHHHHHHHhcc
Confidence            7777766543333                                                  34577999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCC
Q 013941          406 DPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~  425 (433)
                      +|.+|++..|++.|||+...
T Consensus       260 ~p~~r~~l~~v~~hpwI~a~  279 (281)
T KOG0580|consen  260 NPIERLALTEVMDHPWIVAN  279 (281)
T ss_pred             CccccccHHHHhhhHHHHhc
Confidence            99999999999999999764

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.9e-50  Score=375.02  Aligned_cols=249  Identities=25%  Similarity=0.346  Sum_probs=212.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....    ...+.+.+|+.+++.+.|+++     +++++++.+.+.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~~~~   75 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFI-----IRLFWTEHDQRF   75 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcH-----hhhHhhhccCCe
Confidence            36999999999999999999999999999999986432    234567789999999998887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|               
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~---------------  138 (291)
T cd05612          76 LYMLMEYVPGGELFSYLRNSG--RFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEG---------------  138 (291)
T ss_pred             EEEEEeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCC---------------
Confidence            99999999 999999998764  799999999999999999999999999999999999996654               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  .+||+|||++...........||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+....
T Consensus       139 ------------~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~  206 (291)
T cd05612         139 ------------HIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGI  206 (291)
T ss_pred             ------------CEEEEecCcchhccCCcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                        57788888776655444456899999999999998899999999999999999999999988776555


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+......+                                                  ....+..+++||.+||+.|
T Consensus       207 ~~~i~~~~~~~--------------------------------------------------~~~~~~~~~~li~~~l~~d  236 (291)
T cd05612         207 YEKILAGKLEF--------------------------------------------------PRHLDLYAKDLIKKLLVVD  236 (291)
T ss_pred             HHHHHhCCcCC--------------------------------------------------CccCCHHHHHHHHHHcCCC
Confidence            54443321111                                                  1233668999999999999


Q ss_pred             CCCCCC-----HHHHhcCCCCCC
Q 013941          407 PAERLK-----AREALRHPFFTR  424 (433)
Q Consensus       407 P~~R~t-----a~ell~hp~f~~  424 (433)
                      |.+|++     ++++++||||+.
T Consensus       237 p~~R~~~~~~~~~~~l~h~~~~~  259 (291)
T cd05612         237 RTRRLGNMKNGADDVKNHRWFKS  259 (291)
T ss_pred             HHHccCCccCCHHHHhcCccccC
Confidence            999995     999999999975

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=2.2e-49  Score=371.11  Aligned_cols=278  Identities=31%  Similarity=0.512  Sum_probs=219.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.++||+|+||.||+|++..+++.||+|+++...  .......+|+.++++++|+|+     +++++++.+.+..+
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~~~~   79 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANI-----VTLHDIIHTERCLT   79 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCE-----eeEEEEEcCCCeEE
Confidence            46999999999999999999999999999999986432  234467789999999988877     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||||+.++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++                  
T Consensus        80 lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~------------------  140 (288)
T cd07871          80 LVFEYLDSDLKQYLDNCG-NLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKG------------------  140 (288)
T ss_pred             EEEeCCCcCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCC------------------
Confidence            999999779999987654 3589999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                               .+||+|||++......   .....||..|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+..+
T Consensus       141 ---------~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~  211 (288)
T cd07871         141 ---------ELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKE  211 (288)
T ss_pred             ---------CEEECcCcceeeccCCCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                     4666677666543221   123468899999999876 468999999999999999999999999988888


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+.+..+.++...+........ +..    ..++..               ............+.++++||.+||++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~---------------~~~~~~~~~~~~~~~~~dll~~mL~~  271 (288)
T cd07871         212 ELHLIFRLLGTPTEETWPGITSNEE-FRS----YLFPQY---------------RAQPLINHAPRLDTDGIDLLSSLLLY  271 (288)
T ss_pred             HHHHHHHHhCCCChHHhhccccchh-hhc----cccCcc---------------CCCchHHhCCCCCHHHHHHHHHhcCc
Confidence            8888888888777654433211100 000    000000               00001112235577899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      ||.+|+|++|+++||||
T Consensus       272 dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         272 ETKSRISAEAALRHSYF  288 (288)
T ss_pred             CcccCCCHHHHhcCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=1e-49  Score=380.17  Aligned_cols=249  Identities=27%  Similarity=0.423  Sum_probs=212.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....    ...+.+.+|+.+++++.|+++     +++++++.+++.
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~~~~   92 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFI-----VNMMCSFQDENR   92 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCC-----CcEEEEEEcCCE
Confidence            46999999999999999999999999999999987532    234567789999999998887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus        93 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~---------------  155 (329)
T PTZ00263         93 VYFLLEFVVGGELFTHLRKAG--RFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKG---------------  155 (329)
T ss_pred             EEEEEcCCCCChHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCC---------------
Confidence            99999999 999999998764  789999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  .+||+|||++...........||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+....
T Consensus       156 ------------~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~  223 (329)
T PTZ00263        156 ------------HVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRI  223 (329)
T ss_pred             ------------CEEEeeccCceEcCCCcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHH
Confidence                        57778888776655544556899999999999999999999999999999999999999987766554


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+......+                                                  ...++..+.+||.+||+.|
T Consensus       224 ~~~i~~~~~~~--------------------------------------------------p~~~~~~~~~li~~~L~~d  253 (329)
T PTZ00263        224 YEKILAGRLKF--------------------------------------------------PNWFDGRARDLVKGLLQTD  253 (329)
T ss_pred             HHHHhcCCcCC--------------------------------------------------CCCCCHHHHHHHHHHhhcC
Confidence            44433211111                                                  1224668899999999999


Q ss_pred             CCCCCC-----HHHHhcCCCCCC
Q 013941          407 PAERLK-----AREALRHPFFTR  424 (433)
Q Consensus       407 P~~R~t-----a~ell~hp~f~~  424 (433)
                      |++|++     ++++++||||++
T Consensus       254 P~~R~~~~~~~~~~ll~hp~f~~  276 (329)
T PTZ00263        254 HTKRLGTLKGGVADVKNHPYFHG  276 (329)
T ss_pred             HHHcCCCCCCCHHHHhcCCccCC
Confidence            999997     799999999986

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=9e-49  Score=366.80  Aligned_cols=280  Identities=31%  Similarity=0.606  Sum_probs=219.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....   ...+.+.+|+.+++.++|+++     +++++++..++.+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~   75 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENI-----VELKEAFRRRGKL   75 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccc-----cchhhhEecCCEE
Confidence            46999999999999999999999999999999987532   334567789999999999887     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      |+||||+.+++.+.+.... ..+++..++.++.||+.||.|||+.||+||||||+||+++.++                 
T Consensus        76 ~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~-----------------  137 (287)
T cd07848          76 YLVFEYVEKNMLELLEEMP-NGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHND-----------------  137 (287)
T ss_pred             EEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC-----------------
Confidence            9999999444444444332 3699999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                .+||+|||++......    .....||..|+|||++.+..++.++|||||||++|+|++|+.||.+.+..
T Consensus       138 ----------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~  207 (287)
T cd07848         138 ----------VLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEI  207 (287)
T ss_pred             ----------cEEEeeccCcccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHH
Confidence                      4666777766543221    12347899999999999988999999999999999999999999998888


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+....+++|............     .....++......             ..........+.++.+||.+||+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~~dll~~~L~  269 (287)
T cd07848         208 DQLFTIQKVLGPLPAEQMKLFYSNPR-----FHGLRFPAVNHPQ-------------SLERRYLGILSGVLLDLMKNLLK  269 (287)
T ss_pred             HHHHHHHHhhCCCCHHHHHhhhccch-----hcccccCcccCcc-------------cHHHhhhcccCHHHHHHHHHHcc
Confidence            88888888888887655432211100     0011111111000             00111223457789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCC
Q 013941          405 YDPAERLKAREALRHPFF  422 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f  422 (433)
                      +||++|||++|+|+||||
T Consensus       270 ~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         270 LNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             CCcccCCCHHHHhcCCCC
Confidence            999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.6e-49  Score=381.83  Aligned_cols=286  Identities=23%  Similarity=0.390  Sum_probs=220.4

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .++|++++.||+|+||.||+|.+..+++.||+|....     ....+|+.++++++|+||     +++++++......|+
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~-----~~~~~E~~il~~l~HpnI-----v~~~~~~~~~~~~~l  160 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR-----GGTATEAHILRAINHPSI-----IQLKGTFTYNKFTCL  160 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh-----hhhHHHHHHHHhCCCCCC-----CCEeEEEEECCeeEE
Confidence            3679999999999999999999999999999997542     346789999999999888     999999999999999


Q ss_pred             EEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          171 VFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       171 v~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+++++|..++....  .+++..++.++.||+.||.|||++|||||||||+|||++.++                   
T Consensus       161 v~e~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~-------------------  219 (391)
T PHA03212        161 ILPRYKTDLYCYLAAKR--NIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPG-------------------  219 (391)
T ss_pred             EEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCC-------------------
Confidence            99999889999987654  689999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccC----CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC-----
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQ----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH-----  321 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~-----  321 (433)
                              .++|+|||++.....    ......||+.|+|||++.+..++.++|||||||++|||++|..||...     
T Consensus       220 --------~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~  291 (391)
T PHA03212        220 --------DVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDG  291 (391)
T ss_pred             --------CEEEEeCCcccccccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccc
Confidence                    467777777653221    122357999999999999989999999999999999999999887543     


Q ss_pred             --ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHh-cCch--hhhhhccCCchHHHH
Q 013941          322 --ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL-LRLP--NLIMQHVDHSAGDLI  396 (433)
Q Consensus       322 --~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~  396 (433)
                        .....+..+....+..|..+...........+.                  ..... ...+  ..........+.++.
T Consensus       292 ~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~  353 (391)
T PHA03212        292 DCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYI------------------GLAKKSSRKPGSRPLWTNLYELPIDLE  353 (391)
T ss_pred             cCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHH------------------HHHhccCCCCCCCCCHHHHhhhhhhHH
Confidence              234556667676776665432211111111100                  00000 0000  000011123466899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCCccccCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL  433 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~~~~~  433 (433)
                      +||.+||++||++||||+|+|+||||++.....+.|+
T Consensus       354 ~Li~~mL~~dP~~Rpta~elL~hp~f~~~~~~~~~~~  390 (391)
T PHA03212        354 YLICKMLAFDAHHRPSAEALLDFAAFQDIPDPYPNPM  390 (391)
T ss_pred             HHHHHHhcCChhhCCCHHHHhcChhhccCCCCCCCCC
Confidence            9999999999999999999999999998777776664

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-49  Score=346.11  Aligned_cols=267  Identities=27%  Similarity=0.444  Sum_probs=220.3

Q ss_pred             ccCCCeEEe-ccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc---
Q 013941           89 NLTPRYRIL-SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY---  164 (433)
Q Consensus        89 ~~~~~y~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~---  164 (433)
                      .+++.|.+. ++||-|-.|.|..|.++.||+.+|+|++...    ....+|++..-..+    +|+|||.++++|++   
T Consensus        58 ~itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds----~KARrEVeLHw~~s----~h~~iV~IidVyeNs~~  129 (400)
T KOG0604|consen   58 SITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS----PKARREVELHWMAS----GHPHIVSIIDVYENSYQ  129 (400)
T ss_pred             cchhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC----HHHHhHhhhhhhhc----CCCceEEeehhhhhhcc
Confidence            345667774 6789999999999999999999999998654    34667887765544    44666999999875   


Q ss_pred             -CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          165 -RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       165 -~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                       ...+.+|||.+ ||.|...++.++...|++.++..|++||..|+.|||+.+|.||||||+|+|++..+           
T Consensus       130 ~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~-----------  198 (400)
T KOG0604|consen  130 GRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTS-----------  198 (400)
T ss_pred             CceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCC-----------
Confidence             46789999999 99999999999888899999999999999999999999999999999999997754           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                   .+..+||+|||+|+....  ...+.+-|++|.|||++....|+..+|+||+||++|-|++|.+||.+
T Consensus       199 -------------~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS  265 (400)
T KOG0604|consen  199 -------------PNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS  265 (400)
T ss_pred             -------------CCcceEecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccc
Confidence                         566799999999987763  33556889999999999999999999999999999999999999987


Q ss_pred             CChHH----HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          321 HENLE----HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       321 ~~~~~----~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      .....    ....|......+|+                                              ..++.+|.+.+
T Consensus       266 ~hg~aispgMk~rI~~gqy~FP~----------------------------------------------pEWs~VSe~aK  299 (400)
T KOG0604|consen  266 NHGLAISPGMKRRIRTGQYEFPE----------------------------------------------PEWSCVSEAAK  299 (400)
T ss_pred             cCCccCChhHHhHhhccCccCCC----------------------------------------------hhHhHHHHHHH
Confidence            55422    22222222223332                                              22456688999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCCccccCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL  433 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~~~~~  433 (433)
                      |+|+++|..+|++|+|++|+++|||+.+...=.+.||
T Consensus       300 dlIR~LLkt~PteRlTI~~~m~hpwi~~~~~vp~tpl  336 (400)
T KOG0604|consen  300 DLIRKLLKTEPTERLTIEEVMDHPWINQYEAVPQTPL  336 (400)
T ss_pred             HHHHHHhcCCchhheeHHHhhcCchhcccccCCCCCc
Confidence            9999999999999999999999999998765444543

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=100.00  E-value=2.2e-49  Score=367.84  Aligned_cols=320  Identities=33%  Similarity=0.592  Sum_probs=263.4

Q ss_pred             CCCCCCceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCC-CCc
Q 013941           75 PDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI-GGT  153 (433)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i-~~~  153 (433)
                      .++..|+|.+.+|+.+..+|.|....|+|-|++|..|.+...|..||||+++.++.....-++|++||++|+...- ...
T Consensus       415 WdDaEGYYrv~igE~LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~  494 (752)
T KOG0670|consen  415 WDDAEGYYRVRIGELLDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKF  494 (752)
T ss_pred             cccccceEEEehhhhhcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhh
Confidence            4667899999999999999999999999999999999999999999999999888878888999999999986543 446


Q ss_pred             ceeEecceeccCCeEEEEEccCCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCc
Q 013941          154 RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSY-RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEY  232 (433)
Q Consensus       154 ~~v~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~  232 (433)
                      ||++++..|.+.+|+|||+|-+..+|.++|.+.+. -.|....++.++.||+.||..|-..||+|.||||+|||++.   
T Consensus       495 Hclrl~r~F~hknHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE---  571 (752)
T KOG0670|consen  495 HCLRLFRHFKHKNHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNE---  571 (752)
T ss_pred             HHHHHHHHhhhcceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEecc---
Confidence            88999999999999999999999999999987542 45888999999999999999999999999999999999976   


Q ss_pred             ccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-cccccCCcccchhhhhCCCCCccchHHHHHHHHHHH
Q 013941          233 VKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       233 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  311 (433)
                                             ....+||||||.|....... +...-+..|.|||++.|.+|+...|+||.||+||||
T Consensus       572 -----------------------~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYEl  628 (752)
T KOG0670|consen  572 -----------------------SKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYEL  628 (752)
T ss_pred             -----------------------CcceeeeccCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEe
Confidence                                   34568999999998766544 334567789999999999999999999999999999


Q ss_pred             HhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccC--------------CCCCCchhhHHHHHHh
Q 013941          312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDW--------------PDGATSRDSMRAVWKL  377 (433)
Q Consensus       312 ~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~  377 (433)
                      .||+..|.+.++-+++..++.+-|++|..++.......+.|...-.-+..              ......+.....+...
T Consensus       629 YtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~  708 (752)
T KOG0670|consen  629 YTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAV  708 (752)
T ss_pred             eccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhcc
Confidence            99999999999999999999999999999988766554444322111000              0111112222222222


Q ss_pred             cCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       378 ~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      ..++...    ...-.++++||.+||..||++|.|..|+|+||||+.
T Consensus       709 q~~~deq----~~~~~~~rdLLdkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  709 QRLPDEQ----PKIVQQLRDLLDKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             CCCCchh----HHHHHHHHHHHHHHhccChhhcCCHHHHhcCCcccC
Confidence            2222211    122457999999999999999999999999999985

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=9.1e-49  Score=374.63  Aligned_cols=251  Identities=25%  Similarity=0.403  Sum_probs=210.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCC-cEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKK-ELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~-~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .++|++.+.||+|+||.||+|.+..++ ..||+|++....    ...+.+.+|+.++..++|+++     +++++++.++
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~I-----v~~~~~~~~~  103 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFC-----VNLYGSFKDE  103 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCC-----cceEEEEEeC
Confidence            357999999999999999999876654 689999986432    234567789999999998887     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +.+|+||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++             
T Consensus       104 ~~~~lv~Ey~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~-------------  168 (340)
T PTZ00426        104 SYLYLVLEFVIGGEFFTFLRRNK--RFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDG-------------  168 (340)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCC-------------
Confidence            9999999999 999999998765  799999999999999999999999999999999999996655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                    .+||+|||++...........||+.|+|||++.+..++.++|||||||++|||++|..||.+.+..
T Consensus       169 --------------~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~  234 (340)
T PTZ00426        169 --------------FIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPL  234 (340)
T ss_pred             --------------CEEEecCCCCeecCCCcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHH
Confidence                          567777777766554445568999999999999988999999999999999999999999887665


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+......+                                                  ....+..+.++|.+||+
T Consensus       235 ~~~~~i~~~~~~~--------------------------------------------------p~~~~~~~~~li~~~l~  264 (340)
T PTZ00426        235 LIYQKILEGIIYF--------------------------------------------------PKFLDNNCKHLMKKLLS  264 (340)
T ss_pred             HHHHHHhcCCCCC--------------------------------------------------CCCCCHHHHHHHHHHcc
Confidence            5444443221111                                                  12346688999999999


Q ss_pred             cCCCCCC-----CHHHHhcCCCCCCC
Q 013941          405 YDPAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~-----ta~ell~hp~f~~~  425 (433)
                      .||++|+     |++++++||||.+.
T Consensus       265 ~dp~~R~~~~~~~~~~~~~hp~f~~~  290 (340)
T PTZ00426        265 HDLTKRYGNLKKGAQNVKEHPWFGNI  290 (340)
T ss_pred             cCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence            9999996     89999999999863

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=2.7e-48  Score=366.46  Aligned_cols=283  Identities=28%  Similarity=0.468  Sum_probs=211.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.+.||+|+||.||+|++..+++.||||+++...  .......+|+.+++.+.|+|+     +++++++.+.+..|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~~~~   79 (303)
T cd07869           5 DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANI-----VLLHDIIHTKETLT   79 (303)
T ss_pred             ccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCc-----CeEEEEEecCCeEE
Confidence            57999999999999999999999999999999987432  223456789999999998887     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||||++++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++                  
T Consensus        80 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~------------------  140 (303)
T cd07869          80 LVFEYVHTDLCQYMDKHP-GGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTG------------------  140 (303)
T ss_pred             EEEECCCcCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC------------------
Confidence            999999889998887653 4689999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChH-
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENL-  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~-  324 (433)
                               .+||+|||++.....   ......||+.|+|||++.+. .++.++|||||||++|+|++|..||.+..+. 
T Consensus       141 ---------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~  211 (303)
T cd07869         141 ---------ELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQ  211 (303)
T ss_pred             ---------CEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHH
Confidence                     466666766643221   11234689999999998764 5889999999999999999999999876543 


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      ..+..+....+......+..... ...+...  ....    .........+.           ....+.++.+||.+||+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~----~~~~~~~~~~~-----------~~~~~~~~~dli~~mL~  273 (303)
T cd07869         212 DQLERIFLVLGTPNEDTWPGVHS-LPHFKPE--RFTL----YSPKNLRQAWN-----------KLSYVNHAEDLASKLLQ  273 (303)
T ss_pred             HHHHHHHHHhCCCChhhccchhh-ccccccc--cccc----cCCccHHHHhh-----------ccCCChHHHHHHHHHhc
Confidence            44555555554433221111000 0000000  0000    00000111110           11235688999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .||++|+|++|+++||||++-
T Consensus       274 ~dp~~R~s~~~~l~h~~f~~~  294 (303)
T cd07869         274 CFPKNRLSAQAALSHEYFSDL  294 (303)
T ss_pred             cCchhccCHHHHhcCcccccC
Confidence            999999999999999999874

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.6e-50  Score=345.37  Aligned_cols=255  Identities=29%  Similarity=0.490  Sum_probs=215.1

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---------hhhHHHHHHHHHHHHHHHhCCCCCcceeEecce
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---------NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNW  161 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---------~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~  161 (433)
                      -++|.-.+.||.|..++|-++.++.+|+.+|+|++...         ....+...+|+.||+++.    +||+|+.+.++
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~----GHP~II~l~D~   91 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVM----GHPYIIDLQDV   91 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhc----CCCcEEEeeee
Confidence            34688889999999999999999999999999998521         123456678999999986    44666999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      |+.+..+++|+|.| .|.|.|++.+.-  .+++...+.|++||+.|++|||.++||||||||+|||+++           
T Consensus        92 yes~sF~FlVFdl~prGELFDyLts~V--tlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILldd-----------  158 (411)
T KOG0599|consen   92 YESDAFVFLVFDLMPRGELFDYLTSKV--TLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDD-----------  158 (411)
T ss_pred             ccCcchhhhhhhhcccchHHHHhhhhe--eecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeecc-----------
Confidence            99999999999999 999999998875  8999999999999999999999999999999999999865           


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhC------CCCCccchHHHHHHHHHHHH
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILG------LGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlG~il~el~  312 (433)
                                      +..++|+|||+|.......  ...|||+.|+|||.+..      .+|+..+|+||+|||+|-|+
T Consensus       159 ----------------n~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLL  222 (411)
T KOG0599|consen  159 ----------------NMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLL  222 (411)
T ss_pred             ----------------ccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHH
Confidence                            4467778888777655443  44799999999999864      25889999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      .|.+||......-.+.+|++....+.                                              ...+..++
T Consensus       223 aGcpPFwHRkQmlMLR~ImeGkyqF~----------------------------------------------speWadis  256 (411)
T KOG0599|consen  223 AGCPPFWHRKQMLMLRMIMEGKYQFR----------------------------------------------SPEWADIS  256 (411)
T ss_pred             cCCCchhHHHHHHHHHHHHhcccccC----------------------------------------------Ccchhhcc
Confidence            99999987776666666665433221                                              12234567


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      ...+|||.+||+.||++|+|++|+|+||||.+
T Consensus       257 ~~~KdLIsrlLqVdp~~Ritake~LaHpff~q  288 (411)
T KOG0599|consen  257 ATVKDLISRLLQVDPTKRITAKEALAHPFFIQ  288 (411)
T ss_pred             ccHHHHHHHHHeeCchhcccHHHHhcChHHHH
Confidence            78999999999999999999999999999954

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5e-49  Score=365.13  Aligned_cols=255  Identities=25%  Similarity=0.460  Sum_probs=229.4

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.+-|.+.+.||+|.|++|-+|++..+|+.||||++.+..   .....+.+|+..++.++|+||     |++|++.+..
T Consensus        15 kIAGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNi-----VRLYEViDTQ   89 (864)
T KOG4717|consen   15 KIAGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNI-----VRLYEVIDTQ   89 (864)
T ss_pred             ceeeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCe-----eeeeehhccc
Confidence            45567999999999999999999999999999999997643   344667889999999999988     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ..+|||+|+- +|+|++||.++. ..+.++.+++++.||+.|+.|+|+..+|||||||+||.+.+               
T Consensus        90 TKlyLiLELGD~GDl~DyImKHe-~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFE---------------  153 (864)
T KOG4717|consen   90 TKLYLILELGDGGDLFDYIMKHE-EGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFE---------------  153 (864)
T ss_pred             ceEEEEEEecCCchHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEee---------------
Confidence            9999999999 899999998876 57999999999999999999999999999999999999854               


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCCCCC-ccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~~~~-~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                 +.+-+||+|||++.....  ...+.+|+..|-|||++.|..|+ +++||||||||||-|++|++||...
T Consensus       154 -----------KlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeA  222 (864)
T KOG4717|consen  154 -----------KLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEA  222 (864)
T ss_pred             -----------ecCceEeeeccccccCCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccc
Confidence                       445689999998865443  34668999999999999999997 7899999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      ++.+.+.+|+.+...+|..                                                  ++.++++||..
T Consensus       223 NDSETLTmImDCKYtvPsh--------------------------------------------------vS~eCrdLI~s  252 (864)
T KOG4717|consen  223 NDSETLTMIMDCKYTVPSH--------------------------------------------------VSKECRDLIQS  252 (864)
T ss_pred             cchhhhhhhhcccccCchh--------------------------------------------------hhHHHHHHHHH
Confidence            9999999999887777643                                                  47799999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||+.||.+|.+.+||..|+|++..
T Consensus       253 MLvRdPkkRAslEeI~s~~Wlq~~  276 (864)
T KOG4717|consen  253 MLVRDPKKRASLEEIVSTSWLQAG  276 (864)
T ss_pred             HHhcCchhhccHHHHhccccccCC
Confidence            999999999999999999999965

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=8.5e-49  Score=373.01  Aligned_cols=243  Identities=26%  Similarity=0.430  Sum_probs=202.7

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      +.||+|+||.||+|++..+|+.||||++++..    .......+|+.+++++.|+++     +++++++...+.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i-----~~~~~~~~~~~~~~lv~e   75 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFL-----TALKYSFQTHDRLCFVME   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCC-----CCEEEEEEcCCEEEEEEe
Confidence            46999999999999999999999999997532    233456789999999998887     999999999999999999


Q ss_pred             cC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCccc
Q 013941          174 KL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK  252 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~  252 (433)
                      |+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                     
T Consensus        76 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~---------------------  132 (323)
T cd05571          76 YANGGELFFHLSRER--VFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDG---------------------  132 (323)
T ss_pred             CCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCC---------------------
Confidence            99 999999998754  799999999999999999999999999999999999997655                     


Q ss_pred             CCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 013941          253 NLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM  329 (433)
Q Consensus       253 ~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~  329 (433)
                            .+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+.......
T Consensus       133 ------~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~  206 (323)
T cd05571         133 ------HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFEL  206 (323)
T ss_pred             ------CEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHH
Confidence                  46777777665321   122335799999999999999999999999999999999999999987665544433


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAE  409 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  409 (433)
                      +......                                                  ....++.++.+||.+||+.||++
T Consensus       207 ~~~~~~~--------------------------------------------------~p~~~~~~~~~li~~~L~~dP~~  236 (323)
T cd05571         207 ILMEEIR--------------------------------------------------FPRTLSPEAKSLLAGLLKKDPKQ  236 (323)
T ss_pred             HHcCCCC--------------------------------------------------CCCCCCHHHHHHHHHHccCCHHH
Confidence            3221111                                                  12345678999999999999999


Q ss_pred             CC-----CHHHHhcCCCCCC
Q 013941          410 RL-----KAREALRHPFFTR  424 (433)
Q Consensus       410 R~-----ta~ell~hp~f~~  424 (433)
                      ||     ++.++++||||.+
T Consensus       237 R~~~~~~~~~~ll~h~~f~~  256 (323)
T cd05571         237 RLGGGPEDAKEIMEHRFFAS  256 (323)
T ss_pred             cCCCCCCCHHHHHcCCCcCC
Confidence            99     8999999999986

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=6e-48  Score=369.79  Aligned_cols=279  Identities=30%  Similarity=0.517  Sum_probs=216.2

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC----
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR----  165 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~----  165 (433)
                      +|++.+.||+|+||.||+|++..+++.||||++...   ......+.+|+.+++.++|+|+     +++++++...    
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~~~~~~~~~   75 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDI-----VEIKHIMLPPSRRE   75 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCE-----eeecceEeccCCCC
Confidence            599999999999999999999999999999998642   1233457789999999998887     8888877432    


Q ss_pred             -CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 -NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 -~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                       ..+|+|||||+++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++.            
T Consensus        76 ~~~~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~------------  141 (338)
T cd07859          76 FKDIYVVFELMESDLHQVIKAND--DLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCK------------  141 (338)
T ss_pred             CceEEEEEecCCCCHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCc------------
Confidence             3589999999889999987654  6999999999999999999999999999999999999976664            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhC--CCCCccchHHHHHHHHHHHHhCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~--~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                     +||+|||++......      .....||..|+|||++.+  ..++.++|||||||++|+|++|+.
T Consensus       142 ---------------~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~  206 (338)
T cd07859         142 ---------------LKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKP  206 (338)
T ss_pred             ---------------EEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCC
Confidence                           556666655432111      122478999999999876  578999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhh-hhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRR-AEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      ||.+.+....+..+....+..+.......... ...++.                  ...+  ..+..........+..+
T Consensus       207 pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~~--~~~~~~~~~~~~~~~~~  266 (338)
T cd07859         207 LFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLS------------------SMRK--KQPVPFSQKFPNADPLA  266 (338)
T ss_pred             CCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHH------------------hhcc--cCCCchHHhcCCCChHH
Confidence            99998888888888888877766544332110 000000                  0000  00000111223456789


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .++|.+||+.||++|||++|+++||||++-
T Consensus       267 ~~li~~~l~~~P~~Rpt~~e~l~hp~f~~~  296 (338)
T cd07859         267 LRLLERLLAFDPKDRPTAEEALADPYFKGL  296 (338)
T ss_pred             HHHHHHHcCcCcccCCCHHHHhcCchhhhc
Confidence            999999999999999999999999999864

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2.2e-48  Score=363.75  Aligned_cols=254  Identities=24%  Similarity=0.370  Sum_probs=207.4

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      |++.+.||+|+||.||+|.+..+++.||+|++....    .....+.+|+.++..+.|+++     +.+++++.+++..+
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i-----v~~~~~~~~~~~~~   76 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFV-----VSLAYAYETKDALC   76 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcE-----EEEEEEEccCCeEE
Confidence            889999999999999999999999999999986432    223456789999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++.......+++..+..++.||+.||+|||++||+||||||+|||++.++                 
T Consensus        77 lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~-----------------  139 (285)
T cd05631          77 LVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRG-----------------  139 (285)
T ss_pred             EEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCC-----------------
Confidence            999999 89999888765445699999999999999999999999999999999999996554                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                .++|+|||++......  .....||..|+|||++.+..++.++|||||||++|+|++|+.||.+......
T Consensus       140 ----------~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~  209 (285)
T cd05631         140 ----------HIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVK  209 (285)
T ss_pred             ----------CEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchh
Confidence                      4677777776553322  1235789999999999999999999999999999999999999987654332


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+.......                                              ........+.++.+||.+||+.|
T Consensus       210 ~~~~~~~~~~~----------------------------------------------~~~~~~~~s~~~~~li~~~l~~~  243 (285)
T cd05631         210 REEVDRRVKED----------------------------------------------QEEYSEKFSEDAKSICRMLLTKN  243 (285)
T ss_pred             HHHHHHHhhcc----------------------------------------------cccCCccCCHHHHHHHHHHhhcC
Confidence            22222111000                                              01122345778999999999999


Q ss_pred             CCCCCC-----HHHHhcCCCCCCC
Q 013941          407 PAERLK-----AREALRHPFFTRD  425 (433)
Q Consensus       407 P~~R~t-----a~ell~hp~f~~~  425 (433)
                      |++|+|     ++++++||||.+.
T Consensus       244 P~~R~~~~~~~~~~~~~h~~~~~~  267 (285)
T cd05631         244 PKERLGCRGNGAAGVKQHPIFKNI  267 (285)
T ss_pred             HHHhcCCCCCCHHHHhcCHhhcCC
Confidence            999997     9999999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.4e-49  Score=359.35  Aligned_cols=250  Identities=28%  Similarity=0.473  Sum_probs=219.5

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ++..+|++.+.||+|.||.|-+|+....|+.||||.++++.    ...-.+.+|++|+..|+||+|     +.++++|++
T Consensus        50 nlkHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhI-----I~IyEVFEN  124 (668)
T KOG0611|consen   50 NLKHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHI-----IQIYEVFEN  124 (668)
T ss_pred             chhhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCce-----eehhhhhcC
Confidence            45678999999999999999999999999999999998643    333456789999999999988     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      .+.+.|||||. +|.|++++...+  .+++..++.+++||.+|+.|+|.++++|||||.+|||++.++            
T Consensus       125 kdKIvivMEYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~------------  190 (668)
T KOG0611|consen  125 KDKIVIVMEYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNN------------  190 (668)
T ss_pred             CceEEEEEEecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCC------------
Confidence            99999999999 999999999886  899999999999999999999999999999999999986544            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCC-ccchHHHHHHHHHHHHhCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~-~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                     .+||+|||++......  ..++||++.|.+||++.|.+|. +.+|.|||||+||-|+.|..||.+
T Consensus       191 ---------------NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG  255 (668)
T KOG0611|consen  191 ---------------NIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDG  255 (668)
T ss_pred             ---------------CeeeeccchhhhhccccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCC
Confidence                           6788888888665543  3668999999999999999985 899999999999999999999999


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+....+.+|.+.-..-|                                                   ..+.++.-||+
T Consensus       256 ~Dhk~lvrQIs~GaYrEP---------------------------------------------------~~PSdA~gLIR  284 (668)
T KOG0611|consen  256 RDHKRLVRQISRGAYREP---------------------------------------------------ETPSDASGLIR  284 (668)
T ss_pred             chHHHHHHHhhcccccCC---------------------------------------------------CCCchHHHHHH
Confidence            988888777765322211                                                   12446789999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      .||..||++|.|+++|..|-|+.
T Consensus       285 wmLmVNP~RRATieDiAsHWWvN  307 (668)
T KOG0611|consen  285 WMLMVNPERRATIEDIASHWWVN  307 (668)
T ss_pred             HHHhcCcccchhHHHHhhhheee
Confidence            99999999999999999999986

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=6.1e-48  Score=380.78  Aligned_cols=282  Identities=27%  Similarity=0.492  Sum_probs=218.4

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc----
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY----  164 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~----  164 (433)
                      ....+|++.+.||+|+||.||+|.+..+++.||||++....   ....+|+.+++.++|+|+     +++++++..    
T Consensus        63 ~~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~---~~~~~Ei~il~~l~h~ni-----v~l~~~~~~~~~~  134 (440)
T PTZ00036         63 SPNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP---QYKNRELLIMKNLNHINI-----IFLKDYYYTECFK  134 (440)
T ss_pred             CcCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc---chHHHHHHHHHhcCCCCC-----cceeeeEeecccc
Confidence            34568999999999999999999999999999999886433   234579999999999888     888776532    


Q ss_pred             ----CCeEEEEEccCCCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          165 ----RNHICIVFEKLGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       165 ----~~~~~lv~e~~~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                          ...+++||||++++|.+++..  .....+++..++.++.||+.||+|||++||+||||||+|||++.++       
T Consensus       135 ~~~~~~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~-------  207 (440)
T PTZ00036        135 KNEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNT-------  207 (440)
T ss_pred             cCCCceEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCC-------
Confidence                235789999998888887753  2234799999999999999999999999999999999999996432       


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~  315 (433)
                                         ..+||+|||++.....  ......||+.|+|||++.+. .++.++|||||||++|||++|.
T Consensus       208 -------------------~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~  268 (440)
T PTZ00036        208 -------------------HTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGY  268 (440)
T ss_pred             -------------------CceeeeccccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence                               2478888888865432  22335789999999998765 6899999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      +||.+....+.+..+.+.++.++............       ...++...              ...+........+.++
T Consensus       269 ~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~-------~~~~~~~~--------------~~~l~~~~p~~~~~~~  327 (440)
T PTZ00036        269 PIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYA-------DIKFPDVK--------------PKDLKKVFPKGTPDDA  327 (440)
T ss_pred             CCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhh-------cccCCccC--------------chhHHHHhccCCCHHH
Confidence            99999988888888888888766544332211100       01111100              0011111223457789


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ++||.+||++||.+|+|+.|+|+||||.+.
T Consensus       328 ~~li~~~L~~dP~~R~ta~e~l~hp~f~~~  357 (440)
T PTZ00036        328 INFISQFLKYEPLKRLNPIEALADPFFDDL  357 (440)
T ss_pred             HHHHHHHCCCChhHCcCHHHHhCChhHHhh
Confidence            999999999999999999999999999864

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=1.3e-47  Score=370.32  Aligned_cols=302  Identities=28%  Similarity=0.473  Sum_probs=227.2

Q ss_pred             CceeeecCC---ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCc
Q 013941           80 GHYVFAIGE---NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        80 ~~~~~~~~~---~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      .+|.+..++   .+.++|++.+.||+|+||.||+|.+..+++.||+|++...   ......+.+|+.+++.++|+|+   
T Consensus         6 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni---   82 (359)
T cd07876           6 QFYSVQVADSTFTVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNI---   82 (359)
T ss_pred             CcceecccchhhhhhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCE---
Confidence            345555555   4568999999999999999999999999999999998643   2334567789999999988877   


Q ss_pred             ceeEecceeccC------CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEE
Q 013941          154 RCVQIRNWFDYR------NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILL  227 (433)
Q Consensus       154 ~~v~~~~~~~~~------~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli  227 (433)
                        +++++++...      ..+|+||||++++|.+.+..    .+++..+..++.||+.||+|||++||+||||||+|||+
T Consensus        83 --v~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~  156 (359)
T cd07876          83 --ISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIHM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV  156 (359)
T ss_pred             --eeeeeeeccCCCccccceeEEEEeCCCcCHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEE
Confidence              9999988643      35799999998788887743    48899999999999999999999999999999999999


Q ss_pred             eeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHH
Q 013941          228 VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVG  305 (433)
Q Consensus       228 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  305 (433)
                      +.++                           .+||+|||++......  .....||..|+|||++.+..++.++||||||
T Consensus       157 ~~~~---------------------------~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG  209 (359)
T cd07876         157 KSDC---------------------------TLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG  209 (359)
T ss_pred             CCCC---------------------------CEEEecCCCccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHH
Confidence            7655                           4667777766543221  2335789999999999998999999999999


Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          306 CILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       306 ~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      |++|+|++|+.||.+.+.......+.+.++.++..+..........+......  ++.. .    ....+.....+ ...
T Consensus       210 ~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~~~~-~~~  281 (359)
T cd07876         210 CIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQ--YPGI-S----FEELFPDWIFP-SES  281 (359)
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCC--CCCc-c----hhhhccccccc-ccc
Confidence            99999999999999988888888888888777766555443333333221111  1000 0    00000000000 000


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ......+..+++||.+||+.||++|||+.|+|+||||...
T Consensus       282 ~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  321 (359)
T cd07876         282 ERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYITVW  321 (359)
T ss_pred             ccccccchhHHHHHHHHhccCcccCCCHHHHhcCchhhhh
Confidence            1112346689999999999999999999999999999853

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=1e-47  Score=360.24  Aligned_cols=276  Identities=32%  Similarity=0.522  Sum_probs=210.8

Q ss_pred             CCeEEeccccccccEEEEEEEecC-CCcEEEEEEeccch---hhHHHHHHHHHHHHHHH---hCCCCCcceeEecceec-
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE-KKELVAIKIVRSIN---KYREAAMIEIDVLQRLA---RHDIGGTRCVQIRNWFD-  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~-~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~---~~~i~~~~~v~~~~~~~-  163 (433)
                      ++|++.+.||+|+||.||+|++.. +++.||+|+++...   .......+|+.+++.+.   |+|+     +++++++. 
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpni-----v~~~~~~~~   75 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV-----VRLFDVCTV   75 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCc-----ceEEEEEec
Confidence            369999999999999999999854 56889999986432   22345667888877764   5555     99998874 


Q ss_pred             ----cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          164 ----YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       164 ----~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                          ....+++||||++++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++        
T Consensus        76 ~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~--------  147 (290)
T cd07862          76 SRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG--------  147 (290)
T ss_pred             ccCCCCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCC--------
Confidence                34679999999988999999876555789999999999999999999999999999999999997655        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                         .+||+|||++......  .....||..|+|||++.+..++.++|||||||++|||++|.+|
T Consensus       148 -------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~  208 (290)
T cd07862         148 -------------------QIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPL  208 (290)
T ss_pred             -------------------CEEEccccceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCC
Confidence                               4666777766543222  2335789999999999988999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+..+.+..+....+.++...+..........+.                       ..............+..+.+
T Consensus       209 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~  265 (290)
T cd07862         209 FRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFH-----------------------SKSAQPIEKFVTDIDELGKD  265 (290)
T ss_pred             cCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhcc-----------------------CCCCCCHHHHccCCCHHHHH
Confidence            9999888888888776654432211110000000000                       00001111222346778999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ||.+||+.||++|||+.|+|+||||
T Consensus       266 li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         266 LLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             HHHHHhccCchhcCCHHHHhcCCCC
Confidence            9999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.2e-47  Score=369.68  Aligned_cols=254  Identities=25%  Similarity=0.424  Sum_probs=199.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ..|+++++||+|+||.||+|++..+++.||||++...  ......+.+|+++++.++|+||     +++++++...+.++
T Consensus        74 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~  148 (353)
T PLN00034         74 SELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNV-----VKCHDMFDHNGEIQ  148 (353)
T ss_pred             HHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCc-----ceeeeEeccCCeEE
Confidence            4588899999999999999999999999999998643  2345667899999999998887     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+.      ...++..+..++.||+.||+|||++||+||||||+|||++.++                 
T Consensus       149 lv~e~~~~~~L~~~------~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~-----------------  205 (353)
T PLN00034        149 VLLEFMDGGSLEGT------HIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAK-----------------  205 (353)
T ss_pred             EEEecCCCCccccc------ccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCC-----------------
Confidence            999999 8888643      2467888899999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhC-----CCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILG-----LGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                .+||+|||++......   .....||..|+|||++..     ...+.++|||||||++|||++|+.||..
T Consensus       206 ----------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~  275 (353)
T PLN00034        206 ----------NVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGV  275 (353)
T ss_pred             ----------CEEEcccccceecccccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCC
Confidence                      4566666666543321   123579999999998753     2245789999999999999999999974


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ....+....+.......+                                              ......++.++.+||.
T Consensus       276 ~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~l~~li~  309 (353)
T PLN00034        276 GRQGDWASLMCAICMSQP----------------------------------------------PEAPATASREFRHFIS  309 (353)
T ss_pred             CCCccHHHHHHHHhccCC----------------------------------------------CCCCCccCHHHHHHHH
Confidence            332222111111100000                                              0112345678999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      +||+.||++|||+.|+++||||.+...+.
T Consensus       310 ~~l~~~P~~Rpt~~ell~hp~~~~~~~~~  338 (353)
T PLN00034        310 CCLQREPAKRWSAMQLLQHPFILRAQPGQ  338 (353)
T ss_pred             HHccCChhhCcCHHHHhcCcccccCCccc
Confidence            99999999999999999999999985543

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=9.4e-48  Score=371.67  Aligned_cols=279  Identities=23%  Similarity=0.310  Sum_probs=212.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||+||+|++..+++.||||++++..    .....+.+|+.++..+.|+++     +++++.+.+.+.
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~i-----v~~~~~~~~~~~   75 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWV-----VKMFYSFQDKLN   75 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCc-----ceEEEEEecCCe
Confidence            36999999999999999999999999999999997532    233456779999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++.+..  .+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||++.....
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~  153 (363)
T cd05628          76 LYLIMEFLPGGDMMTLLMKKD--TLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKK  153 (363)
T ss_pred             EEEEEcCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCcccccc
Confidence            99999999 999999998764  799999999999999999999999999999999999999999999999988765432


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccc------------cCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFE------------HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g  314 (433)
                      ...... ..........|+......            .......+||+.|+|||++.+..++.++|||||||++|||++|
T Consensus       154 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G  232 (363)
T cd05628         154 AHRTEF-YRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIG  232 (363)
T ss_pred             cccccc-cccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhC
Confidence            111000 000000011122111100            0011235899999999999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      ..||.+.+.......+......+                      .++                        ....++.+
T Consensus       233 ~~Pf~~~~~~~~~~~i~~~~~~~----------------------~~p------------------------~~~~~s~~  266 (363)
T cd05628         233 YPPFCSETPQETYKKVMNWKETL----------------------IFP------------------------PEVPISEK  266 (363)
T ss_pred             CCCCCCCCHHHHHHHHHcCcCcc----------------------cCC------------------------CcCCCCHH
Confidence            99998877666555443321110                      000                        01134678


Q ss_pred             HHHHHHHhcccCCCC---CCCHHHHhcCCCCCCC
Q 013941          395 LIDLLQGLLRYDPAE---RLKAREALRHPFFTRD  425 (433)
Q Consensus       395 l~~li~~~L~~dP~~---R~ta~ell~hp~f~~~  425 (433)
                      +++||.+|+. +|.+   ||+++||++||||++.
T Consensus       267 ~~~li~~l~~-~~~~r~~r~~~~ei~~hp~f~~~  299 (363)
T cd05628         267 AKDLILRFCC-EWEHRIGAPGVEEIKTNPFFEGV  299 (363)
T ss_pred             HHHHHHHHcC-ChhhcCCCCCHHHHhCCCCCCCC
Confidence            9999999876 4554   5799999999999864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.6e-48  Score=368.60  Aligned_cols=258  Identities=27%  Similarity=0.397  Sum_probs=214.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|++..+++.||||++++..    .....+.+|+.++..+.|+++     +++++++...+.
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----v~~~~~~~~~~~   75 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWL-----VKLLYAFQDDEY   75 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCC-----ccEEEEEEcCCE
Confidence            36999999999999999999999999999999997532    233556789999999988887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++               
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~---------------  138 (333)
T cd05600          76 LYLAMEYVPGGDFRTLLNNLG--VLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASG---------------  138 (333)
T ss_pred             EEEEEeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCC---------------
Confidence            99999999 999999998654  689999999999999999999999999999999999996554               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  .+||+|||++...........||+.|+|||++.+..++.++|||||||++|||++|..||...+..+.
T Consensus       139 ------------~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~  206 (333)
T cd05600         139 ------------HIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNET  206 (333)
T ss_pred             ------------CEEEEeCcCCcccccccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHH
Confidence                        57888888877655544556899999999999999999999999999999999999999988776655


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+......+                      ..+..                    ......++.++.+||.+||..+
T Consensus       207 ~~~i~~~~~~~----------------------~~~~~--------------------~~~~~~~s~~~~~li~~~l~~~  244 (333)
T cd05600         207 WENLKYWKETL----------------------QRPVY--------------------DDPRFNLSDEAWDLITKLINDP  244 (333)
T ss_pred             HHHHHhccccc----------------------cCCCC--------------------CccccccCHHHHHHHHHHhhCh
Confidence            54443321100                      00000                    0000234678999999999999


Q ss_pred             CCCCCCHHHHhcCCCCCCC
Q 013941          407 PAERLKAREALRHPFFTRD  425 (433)
Q Consensus       407 P~~R~ta~ell~hp~f~~~  425 (433)
                      |.+|++++++++||||.+.
T Consensus       245 ~~rr~s~~~ll~h~~~~~~  263 (333)
T cd05600         245 SRRFGSLEDIKNHPFFKEV  263 (333)
T ss_pred             hhhcCCHHHHHhCcccCCC
Confidence            9999999999999999964

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=3.5e-47  Score=366.82  Aligned_cols=301  Identities=27%  Similarity=0.447  Sum_probs=226.0

Q ss_pred             ceeeecCC---ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcc
Q 013941           81 HYVFAIGE---NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTR  154 (433)
Q Consensus        81 ~~~~~~~~---~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~  154 (433)
                      +|.+..++   .+.++|++.+.||+|+||.||+|.+..+++.||||++...   ........+|+.+++.++|+|+    
T Consensus         3 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni----   78 (355)
T cd07874           3 FYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI----   78 (355)
T ss_pred             ceeeccCchhhhhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCch----
Confidence            45566655   3468999999999999999999999999999999998643   2334567789999999999888    


Q ss_pred             eeEecceeccC------CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEe
Q 013941          155 CVQIRNWFDYR------NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV  228 (433)
Q Consensus       155 ~v~~~~~~~~~------~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~  228 (433)
                       +++++++...      ...|+||||+.++|.+.+..    .+++..+..++.||+.||+|||++||+||||||+|||++
T Consensus        79 -v~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~  153 (355)
T cd07874          79 -ISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK  153 (355)
T ss_pred             -hceeeeeeccccccccceeEEEhhhhcccHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEC
Confidence             8888877543      45799999997788887754    488999999999999999999999999999999999997


Q ss_pred             eCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHH
Q 013941          229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGC  306 (433)
Q Consensus       229 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~  306 (433)
                      .++                           .+||+|||++......  .....||..|+|||++.+..++.++|||||||
T Consensus       154 ~~~---------------------------~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~  206 (355)
T cd07874         154 SDC---------------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGC  206 (355)
T ss_pred             CCC---------------------------CEEEeeCcccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHH
Confidence            655                           4677777776544332  22357899999999999989999999999999


Q ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhh
Q 013941          307 ILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ  386 (433)
Q Consensus       307 il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (433)
                      ++|+|++|+.||.+.+..+....+...++.....+..........+........  . .....    .... ........
T Consensus       207 il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~-~~~~~~~~  278 (355)
T cd07874         207 IMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYA--G-LTFPK----LFPD-SLFPADSE  278 (355)
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccc--c-ccchh----hccc-cccccccc
Confidence            999999999999998887777777777776665554443333333322111100  0 00000    0000 00000011


Q ss_pred             ccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       387 ~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .....+.++++||.+||+.||++|||+.|+|+||||...
T Consensus       279 ~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         279 HNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             cccccchHHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence            122346688999999999999999999999999999854

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9e-48  Score=372.30  Aligned_cols=280  Identities=25%  Similarity=0.397  Sum_probs=214.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||+||+|++..+++.||||++....    .....+.+|+.++..++|+++     +++++++.+++.
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~i-----v~~~~~~~~~~~   75 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWV-----VKLYYSFQDENY   75 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCC-----cceEEEEEcCCe
Confidence            36999999999999999999999999999999997532    233456789999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||++.....
T Consensus        76 ~~lv~E~~~~g~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  153 (364)
T cd05599          76 LYLIMEYLPGGDMMTLLMKKD--TFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKK  153 (364)
T ss_pred             EEEEECCCCCcHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceeccc
Confidence            99999999 999999998764  699999999999999999999999999999999999999999999999998765432


Q ss_pred             CCCc--ccCCCCCCCeeeecCCCCccccC------------CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHH
Q 013941          247 DGSY--FKNLPKSSAIKLIDFGSTTFEHQ------------DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       247 ~~~~--~~~~~~~~~~kl~Dfg~a~~~~~------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~  312 (433)
                      ....  ..........-..++........            .....+||+.|+|||++.+..++.++|||||||++|||+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~  233 (364)
T cd05599         154 SHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEML  233 (364)
T ss_pred             cccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhh
Confidence            2110  00000000000011111100000            111247999999999999989999999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      +|..||.+.+.......+......+                      ..+                        ....++
T Consensus       234 ~G~~Pf~~~~~~~~~~~i~~~~~~~----------------------~~~------------------------~~~~~s  267 (364)
T cd05599         234 VGYPPFCSDNPQETYRKIINWKETL----------------------QFP------------------------DEVPLS  267 (364)
T ss_pred             cCCCCCCCCCHHHHHHHHHcCCCcc----------------------CCC------------------------CCCCCC
Confidence            9999998877655444332211000                      000                        011346


Q ss_pred             HHHHHHHHHhcccCCCCCCC---HHHHhcCCCCCCC
Q 013941          393 GDLIDLLQGLLRYDPAERLK---AREALRHPFFTRD  425 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~t---a~ell~hp~f~~~  425 (433)
                      +++.+||.+||. +|.+|++   ++|+++||||+..
T Consensus       268 ~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~  302 (364)
T cd05599         268 PEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGV  302 (364)
T ss_pred             HHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCC
Confidence            789999999997 9999998   9999999999863

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=9.9e-47  Score=364.88  Aligned_cols=291  Identities=27%  Similarity=0.451  Sum_probs=221.4

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC-
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR-  165 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~-  165 (433)
                      +.++|++.+.||+|+||.||+|.+..+++.||||++...   ......+.+|+.+++.+.|+|+     +++++++... 
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----i~~~~~~~~~~   96 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI-----IGLLNVFTPQK   96 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCc-----cccceeecccc
Confidence            457899999999999999999999999999999998643   2334567789999999999888     8888776542 


Q ss_pred             -----CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          166 -----NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       166 -----~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                           ..+|+||||++++|.+.+..    .+++..+..++.||+.||+|||++||+||||||+|||++.++         
T Consensus        97 ~~~~~~~~~lv~e~~~~~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~---------  163 (364)
T cd07875          97 SLEEFQDVYIVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDC---------  163 (364)
T ss_pred             cccccCeEEEEEeCCCCCHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCC---------
Confidence                 46899999998889888754    488999999999999999999999999999999999997655         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                        .+||+|||++......  .....||..|+|||++.+..++.++|||||||++|+|++|+.||
T Consensus       164 ------------------~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf  225 (364)
T cd07875         164 ------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLF  225 (364)
T ss_pred             ------------------cEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCC
Confidence                              4677777777654332  12357899999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.+..+....+....+.++..+..........+........  . .    ......... ............+..+++|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~~~~~~-~~~~~~~~~~~~~~~~~dl  297 (364)
T cd07875         226 PGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYA--G-Y----SFEKLFPDV-LFPADSEHNKLKASQARDL  297 (364)
T ss_pred             CCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcC--C-C----ChHhhCccc-cccccccccccccHHHHHH
Confidence            999888888888887777666554443333222221110000  0 0    000000000 0000011112235688999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      |.+||+.||++|||++|+|+||||..
T Consensus       298 l~~mL~~dP~~R~t~~e~L~hp~~~~  323 (364)
T cd07875         298 LSKMLVIDASKRISVDEALQHPYINV  323 (364)
T ss_pred             HHHhcCcCcccCCCHHHHhcCccccc
Confidence            99999999999999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-47  Score=363.29  Aligned_cols=242  Identities=30%  Similarity=0.482  Sum_probs=201.1

Q ss_pred             ccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941          100 MGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus       100 lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ||+|+||.||+|++..+++.||+|+++..    ......+.+|+.++.+++|++|     +++++++...+..|+||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~lv~e~~   75 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFI-----VPLKFSFQSPEKLYLVLAFI   75 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcE-----eceeeEEecCCeEEEEEcCC
Confidence            79999999999999999999999998643    2233556789999999988877     99999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                       +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++                       
T Consensus        76 ~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~-----------------------  130 (312)
T cd05585          76 NGGELFHHLQREG--RFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQG-----------------------  130 (312)
T ss_pred             CCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCC-----------------------
Confidence             999999998754  799999999999999999999999999999999999997655                       


Q ss_pred             CCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMME  331 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~  331 (433)
                          .++|+|||++.....   ......||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+.......+.
T Consensus       131 ----~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~  206 (312)
T cd05585         131 ----HIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKIL  206 (312)
T ss_pred             ----cEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHH
Confidence                467777777654221   1233579999999999999999999999999999999999999998766554443332


Q ss_pred             HHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCC
Q 013941          332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL  411 (433)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~  411 (433)
                      ....                                                  ......+.++.+||.+||+.||++|+
T Consensus       207 ~~~~--------------------------------------------------~~~~~~~~~~~~li~~~L~~dp~~R~  236 (312)
T cd05585         207 QEPL--------------------------------------------------RFPDGFDRDAKDLLIGLLSRDPTRRL  236 (312)
T ss_pred             cCCC--------------------------------------------------CCCCcCCHHHHHHHHHHcCCCHHHcC
Confidence            2110                                                  11134567899999999999999997


Q ss_pred             ---CHHHHhcCCCCCCC
Q 013941          412 ---KAREALRHPFFTRD  425 (433)
Q Consensus       412 ---ta~ell~hp~f~~~  425 (433)
                         ++.|+++||||.+.
T Consensus       237 ~~~~~~e~l~hp~~~~~  253 (312)
T cd05585         237 GYNGAQEIKNHPFFSQL  253 (312)
T ss_pred             CCCCHHHHHcCCCcCCC
Confidence               58999999999974

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=2.1e-47  Score=363.72  Aligned_cols=249  Identities=25%  Similarity=0.392  Sum_probs=206.1

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +|++++.||+|+||.||+|++..+++.||||++.+..    ...+....|+.++..+.|++    +++.+++++.+.+.+
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~----~i~~~~~~~~~~~~~   76 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPP----FLTQLHSCFQTMDRL   76 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCC----ceeeeEEEEEcCCEE
Confidence            4899999999999999999999999999999987532    33455677888888887653    348889999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                
T Consensus        77 ~lv~E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~----------------  138 (324)
T cd05587          77 YFVMEYVNGGDLMYHIQQVG--KFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEG----------------  138 (324)
T ss_pred             EEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCC----------------
Confidence            9999999 999999997664  689999999999999999999999999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                 .++|+|||++....   ......+||..|+|||++.+..++.++|||||||++|+|++|+.||.+.+..
T Consensus       139 -----------~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~  207 (324)
T cd05587         139 -----------HIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED  207 (324)
T ss_pred             -----------CEEEeecCcceecCCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH
Confidence                       46677777654321   1223357999999999999999999999999999999999999999887766


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+.......                                                  ....+.++.++|.+||.
T Consensus       208 ~~~~~i~~~~~~~--------------------------------------------------~~~~~~~~~~li~~~l~  237 (324)
T cd05587         208 ELFQSIMEHNVSY--------------------------------------------------PKSLSKEAVSICKGLLT  237 (324)
T ss_pred             HHHHHHHcCCCCC--------------------------------------------------CCCCCHHHHHHHHHHhh
Confidence            5554443321111                                                  12346789999999999


Q ss_pred             cCCCCCCCH-----HHHhcCCCCCC
Q 013941          405 YDPAERLKA-----REALRHPFFTR  424 (433)
Q Consensus       405 ~dP~~R~ta-----~ell~hp~f~~  424 (433)
                      .||++|+++     +++++||||.+
T Consensus       238 ~~P~~R~~~~~~~~~~~~~hp~~~~  262 (324)
T cd05587         238 KHPAKRLGCGPTGERDIREHAFFRR  262 (324)
T ss_pred             cCHHHcCCCCCCCHHHHhcCCCcCC
Confidence            999999976     89999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=6.4e-47  Score=358.08  Aligned_cols=282  Identities=28%  Similarity=0.487  Sum_probs=221.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.++||+|+||.||+|++..+++.||+|.++...  .......+|+.++++++|+++     +++++++..++..+
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~   80 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANI-----VTLHDIVHTDKSLT   80 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCc-----ceEEEEEeeCCeEE
Confidence            57999999999999999999999999999999986432  233456789999999998887     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||||+.++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++                  
T Consensus        81 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~------------------  141 (309)
T cd07872          81 LVFEYLDKDLKQYMDDCG-NIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERG------------------  141 (309)
T ss_pred             EEEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC------------------
Confidence            999999779999887654 3589999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                               .+||+|||++......   .....+|..|+|||++.+. .++.++|||||||++|+|++|+.||.+.+..+
T Consensus       142 ---------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~  212 (309)
T cd07872         142 ---------ELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVED  212 (309)
T ss_pred             ---------CEEECccccceecCCCccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH
Confidence                     4666777766543221   1224678999999998764 58899999999999999999999999988888


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+.+..+..+...+.......... .    ...+.               ..+.........++.++++||.+||+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~---------------~~~~~~~~~~~~~~~~~~~li~~~L~~  272 (309)
T cd07872         213 ELHLIFRLLGTPTEETWPGISSNDEFK-N----YNFPK---------------YKPQPLINHAPRLDTEGIELLTKFLQY  272 (309)
T ss_pred             HHHHHHHHhCCCCHHHHhhhcchhhhh-h----hhcCc---------------cCCCchhhhccCCCHHHHHHHHHhccC
Confidence            888888888777665433221110000 0    00000               000011122245677899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCc
Q 013941          406 DPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||.+|+|++|+++||||+...
T Consensus       273 dp~~R~t~~e~l~h~~~~~~~  293 (309)
T cd07872         273 ESKKRISAEEAMKHAYFRSLG  293 (309)
T ss_pred             ChhhCCCHHHHhcChhhhhcc
Confidence            999999999999999999754

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=2.5e-47  Score=370.96  Aligned_cols=279  Identities=24%  Similarity=0.367  Sum_probs=210.8

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .|++++.||+|+||+||+|++..+++.||||++.+..    .....+.+|+.+++.+.|+++     +++++++.+.+.+
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~i-----v~l~~~~~~~~~~   76 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWV-----VKLYYSFQDKDNL   76 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCe-----eeeEEEEecCCEE
Confidence            5899999999999999999999999999999997532    234567789999999988877     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||++......
T Consensus        77 ~lv~E~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~  154 (381)
T cd05626          77 YFVMDYIPGGDMMSLLIRME--VFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWT  154 (381)
T ss_pred             EEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCcccccc
Confidence            9999999 999999998764  6999999999999999999999999999999999999999999999999986543211


Q ss_pred             CC--cccC------CCCCC-----CeeeecCCCCc-------c---ccCCCcccccCCcccchhhhhCCCCCccchHHHH
Q 013941          248 GS--YFKN------LPKSS-----AIKLIDFGSTT-------F---EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSV  304 (433)
Q Consensus       248 ~~--~~~~------~~~~~-----~~kl~Dfg~a~-------~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  304 (433)
                      ..  .+..      .....     ....+.++...       .   ........+||+.|+|||++.+..++.++|||||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSl  234 (381)
T cd05626         155 HNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSV  234 (381)
T ss_pred             cccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeeh
Confidence            10  0000      00000     00001111000       0   0001123579999999999999899999999999


Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhh
Q 013941          305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI  384 (433)
Q Consensus       305 G~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (433)
                      ||++|||++|..||...+.......+......+                      .+                       
T Consensus       235 G~il~elltG~~Pf~~~~~~~~~~~i~~~~~~~----------------------~~-----------------------  269 (381)
T cd05626         235 GVILFEMLVGQPPFLAPTPTETQLKVINWENTL----------------------HI-----------------------  269 (381)
T ss_pred             hhHHHHHHhCCCCCcCCCHHHHHHHHHcccccc----------------------CC-----------------------
Confidence            999999999999998776554443332211000                      00                       


Q ss_pred             hhccCCchHHHHHHHHHhccc--CCCCCCCHHHHhcCCCCCC
Q 013941          385 MQHVDHSAGDLIDLLQGLLRY--DPAERLKAREALRHPFFTR  424 (433)
Q Consensus       385 ~~~~~~~~~~l~~li~~~L~~--dP~~R~ta~ell~hp~f~~  424 (433)
                       .....+++++.+||.+||..  ++..|++++|+++||||++
T Consensus       270 -~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~  310 (381)
T cd05626         270 -PPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSE  310 (381)
T ss_pred             -CCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCcccCC
Confidence             01123577899999996654  4555999999999999986

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=4.6e-47  Score=368.16  Aligned_cols=281  Identities=25%  Similarity=0.426  Sum_probs=220.0

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC---
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN---  166 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~---  166 (433)
                      .|++.+.||+|+||.||+|.+..+++.||||++...   ......+.+|+.+++.++|+|+     +++++++...+   
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~~~~   75 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNV-----LSALDILQPPHIDP   75 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCc-----CCHhheecCCCccc
Confidence            378899999999999999999999999999998642   2234567789999999999888     99999988766   


Q ss_pred             --eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          167 --HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       167 --~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                        ..|+||||++++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.            
T Consensus        76 ~~~~~lv~e~~~~~l~~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~------------  141 (372)
T cd07853          76 FEEIYVVTELMQSDLHKIIVSPQ--PLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCV------------  141 (372)
T ss_pred             cceEEEEeeccccCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCC------------
Confidence              899999999889998887654  7999999999999999999999999999999999999976654            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                     +||+|||++......    .....+|..|+|||++.+. .++.++|||||||++|||++|+.||.
T Consensus       142 ---------------~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  206 (372)
T cd07853         142 ---------------LKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQ  206 (372)
T ss_pred             ---------------EEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCC
Confidence                           566666655433211    1224678999999999875 47899999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      +.+..+.+..+.+.++..+...+.........++...... .                 .............+.++.+||
T Consensus       207 ~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~li  268 (372)
T cd07853         207 AQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHK-P-----------------PSLPVLYTLSSQATHEAVHLL  268 (372)
T ss_pred             CCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCC-C-----------------CchHHhcccCCCCCHHHHHHH
Confidence            9999999999998888776544433222222211111000 0                 000001112234577899999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          400 QGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .+||+.||++|||+.|+++||||.+.
T Consensus       269 ~~mL~~dP~~R~t~~e~l~hp~~~~~  294 (372)
T cd07853         269 CRMLVFDPDKRISAADALAHPYLDEG  294 (372)
T ss_pred             HHhCCCChhhCcCHHHHhcCHhhCCC
Confidence            99999999999999999999999874

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=1.5e-47  Score=364.95  Aligned_cols=243  Identities=26%  Similarity=0.443  Sum_probs=201.7

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      +.||+|+||.||+|++..+++.||+|++.+..    .....+.+|+.+++.+.|+++     +++++++...+.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~~~~~~lv~E   75 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFL-----TSLKYSFQTKDRLCFVME   75 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCC-----cceEEEEEcCCEEEEEEe
Confidence            46899999999999999999999999997532    233566789999999988887     999999999999999999


Q ss_pred             cC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCccc
Q 013941          174 KL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK  252 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~  252 (433)
                      |+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                     
T Consensus        76 y~~~g~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~---------------------  132 (328)
T cd05593          76 YVNGGELFFHLSRER--VFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDG---------------------  132 (328)
T ss_pred             CCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCC---------------------
Confidence            99 999999887654  799999999999999999999999999999999999997655                     


Q ss_pred             CCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 013941          253 NLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM  329 (433)
Q Consensus       253 ~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~  329 (433)
                            .+||+|||++.....   ......||+.|+|||++.+..++.++|||||||++|+|++|..||...+.......
T Consensus       133 ------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~~~  206 (328)
T cd05593         133 ------HIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFEL  206 (328)
T ss_pred             ------cEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHHHH
Confidence                  467777776654221   12235799999999999988999999999999999999999999987665544333


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAE  409 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  409 (433)
                      +......                                                  ....++.++.+||.+||+.||++
T Consensus       207 ~~~~~~~--------------------------------------------------~p~~~~~~~~~li~~~L~~dP~~  236 (328)
T cd05593         207 ILMEDIK--------------------------------------------------FPRTLSADAKSLLSGLLIKDPNK  236 (328)
T ss_pred             hccCCcc--------------------------------------------------CCCCCCHHHHHHHHHHcCCCHHH
Confidence            2211111                                                  12345678999999999999999


Q ss_pred             CC-----CHHHHhcCCCCCC
Q 013941          410 RL-----KAREALRHPFFTR  424 (433)
Q Consensus       410 R~-----ta~ell~hp~f~~  424 (433)
                      |+     ++.|+++||||..
T Consensus       237 R~~~~~~~~~~il~h~~~~~  256 (328)
T cd05593         237 RLGGGPDDAKEIMRHSFFTG  256 (328)
T ss_pred             cCCCCCCCHHHHhcCCCcCC
Confidence            97     8999999999976

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=7.4e-47  Score=353.98  Aligned_cols=278  Identities=31%  Similarity=0.521  Sum_probs=211.3

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-----
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-----  164 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-----  164 (433)
                      +|++.+.||+|+||+||+|++..+++.||+|.++...   .......+|+.+++.+.+-  .|+|++++++++..     
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~--~h~ni~~~~~~~~~~~~~~   78 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAF--DHPNIVRLMDVCATSRTDR   78 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhc--CCCCeeeeeeeeccccCCC
Confidence            5899999999999999999999999999999986432   2233556788888877421  23455999988754     


Q ss_pred             CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          165 RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       165 ~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ...+++||||+.++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.++             
T Consensus        79 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~-------------  145 (288)
T cd07863          79 ETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGG-------------  145 (288)
T ss_pred             CceEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC-------------
Confidence            3568999999977999998876545699999999999999999999999999999999999997655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                    .+||+|||++......  .....||..|+|||++.+..++.++|||||||++|+|++|.+||.+..
T Consensus       146 --------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~  211 (288)
T cd07863         146 --------------QVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS  211 (288)
T ss_pred             --------------CEEECccCccccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCC
Confidence                          4666777766543322  223478999999999998899999999999999999999999999888


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+.+..+....+......+....             ..+...-          ..............++..+.+||.+|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~li~~~  268 (288)
T cd07863         212 EADQLGKIFDLIGLPPEDDWPRDV-------------TLPRGAF----------SPRGPRPVQSVVPEIEESGAQLLLEM  268 (288)
T ss_pred             HHHHHHHHHHHhCCCChhhCcccc-------------ccccccc----------CCCCCCchHHhCcCcCHHHHHHHHHH
Confidence            877777777665543321111000             0000000          00000111122345677899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCC
Q 013941          403 LRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f  422 (433)
                      |+.||++|||+.|+++||||
T Consensus       269 L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         269 LTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             hccCcccCCCHHHHhcCCCC
Confidence            99999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-47  Score=371.87  Aligned_cols=277  Identities=25%  Similarity=0.396  Sum_probs=212.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|+++++||+|+||.||+|.+..+++.||||++.+..    .....+.+|+.+++.+.|+++     +++++++.+.++
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i-----v~~~~~~~~~~~   75 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWV-----VSLYYSFQDAQY   75 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCc-----ceEEEEEEcCCe
Confidence            36999999999999999999999999999999986532    233556789999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.++++|||++.....
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~  153 (377)
T cd05629          76 LYLIMEFLPGGDLMTMLIKYD--TFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHK  153 (377)
T ss_pred             eEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccccccc
Confidence            99999999 999999997654  799999999999999999999999999999999999999999999999998754322


Q ss_pred             CCC--cccCC----------CCCCCe-------------eeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchH
Q 013941          247 DGS--YFKNL----------PKSSAI-------------KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDL  301 (433)
Q Consensus       247 ~~~--~~~~~----------~~~~~~-------------kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  301 (433)
                      ...  .+..+          +....+             ++.+++.+...  .....+||+.|+|||++.+..++.++||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di  231 (377)
T cd05629         154 QHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRL--MAYSTVGTPDYIAPEIFLQQGYGQECDW  231 (377)
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhcccc--cccccCCCccccCHHHHccCCCCCceee
Confidence            110  00000          000000             01111111100  0112479999999999999899999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCch
Q 013941          302 WSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP  381 (433)
Q Consensus       302 wSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (433)
                      |||||++|||++|..||.+.+..+....+......                      ..++.                  
T Consensus       232 wSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~----------------------~~~p~------------------  271 (377)
T cd05629         232 WSLGAIMFECLIGWPPFCSENSHETYRKIINWRET----------------------LYFPD------------------  271 (377)
T ss_pred             EecchhhhhhhcCCCCCCCCCHHHHHHHHHccCCc----------------------cCCCC------------------
Confidence            99999999999999999877665554444321100                      01110                  


Q ss_pred             hhhhhccCCchHHHHHHHHHhcccCCCCC---CCHHHHhcCCCCCC
Q 013941          382 NLIMQHVDHSAGDLIDLLQGLLRYDPAER---LKAREALRHPFFTR  424 (433)
Q Consensus       382 ~~~~~~~~~~~~~l~~li~~~L~~dP~~R---~ta~ell~hp~f~~  424 (433)
                            ...++.++.+||.+||. +|.+|   +|+.|+++||||++
T Consensus       272 ------~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~  310 (377)
T cd05629         272 ------DIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRG  310 (377)
T ss_pred             ------CCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCC
Confidence                  12346789999999998 77776   59999999999985

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.9e-47  Score=364.14  Aligned_cols=282  Identities=28%  Similarity=0.519  Sum_probs=219.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.++|++++.||+|+||.||+|.+..+++.||||++....   .....+.+|+.+++.++|+|+     +++++++...
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~   86 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENV-----IGLLDVFTPA   86 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCch-----hhhhhhhccc
Confidence            34578999999999999999999999999999999986532   233456789999999999887     8888877532


Q ss_pred             ------CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          166 ------NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       166 ------~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                            ...|++|++++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++        
T Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~--------  155 (343)
T cd07878          87 TSIENFNEVYLVTNLMGADLNNIVKCQ---KLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDC--------  155 (343)
T ss_pred             ccccccCcEEEEeecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCC--------
Confidence                  468999999999999888643   599999999999999999999999999999999999997655        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                         .+||+|||++...........||..|+|||++.+ ..++.++|||||||++|+|++|..||
T Consensus       156 -------------------~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf  216 (343)
T cd07878         156 -------------------ELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALF  216 (343)
T ss_pred             -------------------CEEEcCCccceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCC
Confidence                               4677777777665555555689999999999987 46899999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhh-hhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRR-AEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      .+.+..+.+..+....+..+.......... ...+...-     +.              ... ..........++.+.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------------~~~-~~~~~~~~~~~~~~~~  276 (343)
T cd07878         217 PGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSL-----PH--------------MPQ-QDLKKIFRGANPLAID  276 (343)
T ss_pred             CCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhcc-----cc--------------ccc-hhHHHhccCCCHHHHH
Confidence            988888888888777766655443322110 01110000     00              000 0001112234567899


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||.+||+.||++|||+.|+++||||.+.
T Consensus       277 li~~mL~~dp~~R~s~~ell~hp~~~~~  304 (343)
T cd07878         277 LLEKMLVLDSDKRISASEALAHPYFSQY  304 (343)
T ss_pred             HHHHHcCCChhhCCCHHHHhcCcchhcc
Confidence            9999999999999999999999999864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-49  Score=364.27  Aligned_cols=250  Identities=28%  Similarity=0.449  Sum_probs=210.9

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .|..++.||+|+||.||+|.+..+++.||+|++.-..  ...+.+.+|+.+|..+.+++|     .++++.|..+..+++
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~i-----t~yygsyl~g~~Lwi   88 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNI-----TEYYGSYLKGTKLWI   88 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchH-----HhhhhheeecccHHH
Confidence            4888899999999999999999999999999997533  345678889999999998777     899999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +|||| ||++.+.+....  .+.+..+..++++++.||.|||.++.+|||||+.|||+...|                  
T Consensus        89 iMey~~gGsv~~lL~~~~--~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g------------------  148 (467)
T KOG0201|consen   89 IMEYCGGGSVLDLLKSGN--ILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESG------------------  148 (467)
T ss_pred             HHHHhcCcchhhhhccCC--CCccceeeeehHHHHHHhhhhhhcceecccccccceeEeccC------------------
Confidence            99999 999999998765  568999999999999999999999999999999999997765                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                               .+||+|||.+.....   ...+++||+.|||||++.+..|+.++||||||++.+||++|.+|+........
T Consensus       149 ---------~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrv  219 (467)
T KOG0201|consen  149 ---------DVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRV  219 (467)
T ss_pred             ---------cEEEEecceeeeeechhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceE
Confidence                     567777777654432   23567999999999999988999999999999999999999999987665322


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      +..|       |...                                      .|    .....+++.+++||..||++|
T Consensus       220 lflI-------pk~~--------------------------------------PP----~L~~~~S~~~kEFV~~CL~k~  250 (467)
T KOG0201|consen  220 LFLI-------PKSA--------------------------------------PP----RLDGDFSPPFKEFVEACLDKN  250 (467)
T ss_pred             EEec-------cCCC--------------------------------------CC----ccccccCHHHHHHHHHHhhcC
Confidence            2111       1100                                      00    111256788999999999999


Q ss_pred             CCCCCCHHHHhcCCCCCCC
Q 013941          407 PAERLKAREALRHPFFTRD  425 (433)
Q Consensus       407 P~~R~ta~ell~hp~f~~~  425 (433)
                      |+.||+|.++|+|+|++..
T Consensus       251 P~~RpsA~~LLKh~FIk~a  269 (467)
T KOG0201|consen  251 PEFRPSAKELLKHKFIKRA  269 (467)
T ss_pred             cccCcCHHHHhhhHHHHhc
Confidence            9999999999999999983

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-47  Score=368.24  Aligned_cols=280  Identities=26%  Similarity=0.399  Sum_probs=213.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|++..+++.||||+++...    .....+..|+.++..+.|+++     +++++++.+++.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~~~   75 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWI-----VKLYYSFQDEEH   75 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCc-----cchhhheecCCe
Confidence            36999999999999999999999999999999997532    334567789999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||++.....
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~  153 (350)
T cd05573          76 LYLVMEYMPGGDLMNLLIRKD--VFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNK  153 (350)
T ss_pred             EEEEEcCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcc
Confidence            99999999 999999998763  799999999999999999999999999999999999999888777777776654433


Q ss_pred             CCCcccCCCCCCC-eeeecCC----CCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          247 DGSYFKNLPKSSA-IKLIDFG----STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       247 ~~~~~~~~~~~~~-~kl~Dfg----~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                      ............. .......    .............||+.|+|||++.+..++.++|||||||++|+|++|+.||...
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~  233 (350)
T cd05573         154 AKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSD  233 (350)
T ss_pred             cCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCC
Confidence            2210000000000 0000000    0000001112357999999999999999999999999999999999999999887


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +.......+.......                      ..                        .....+++++.+||.+
T Consensus       234 ~~~~~~~~i~~~~~~~----------------------~~------------------------p~~~~~~~~~~~li~~  267 (350)
T cd05573         234 TLQETYNKIINWKESL----------------------RF------------------------PPDPPVSPEAIDLICR  267 (350)
T ss_pred             CHHHHHHHHhccCCcc----------------------cC------------------------CCCCCCCHHHHHHHHH
Confidence            7555444443211100                      00                        0011247789999999


Q ss_pred             hcccCCCCCCC-HHHHhcCCCCCCC
Q 013941          402 LLRYDPAERLK-AREALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP~~R~t-a~ell~hp~f~~~  425 (433)
                      ||. ||.+|++ ++++++||||++.
T Consensus       268 ll~-dp~~R~~s~~~ll~hp~~~~~  291 (350)
T cd05573         268 LLC-DPEDRLGSFEEIKSHPFFKGI  291 (350)
T ss_pred             Hcc-ChhhcCCCHHHHhcCCCcCCC
Confidence            998 9999999 9999999999863

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=2.2e-47  Score=363.17  Aligned_cols=244  Identities=25%  Similarity=0.413  Sum_probs=201.2

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      +.||+|+||.||+|++..+|+.||+|+++...    .....+.+|+.+++.+.|+++     +++++++...+.+|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----~~~~~~~~~~~~~~lv~E   75 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFL-----TALKYAFQTHDRLCFVME   75 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCC-----cceeeEEecCCEEEEEEe
Confidence            46999999999999999999999999987532    233456679999999998887     999999999999999999


Q ss_pred             cC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCccc
Q 013941          174 KL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK  252 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~  252 (433)
                      |+ +++|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.                    
T Consensus        76 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~--------------------  133 (323)
T cd05595          76 YANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGH--------------------  133 (323)
T ss_pred             CCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCC--------------------
Confidence            99 999999887654  7999999999999999999999999999999999999977664                    


Q ss_pred             CCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 013941          253 NLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM  329 (433)
Q Consensus       253 ~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~  329 (433)
                             +||+|||++.....   ......||+.|+|||++.+..++.++|||||||++|+|++|..||...+.......
T Consensus       134 -------~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~  206 (323)
T cd05595         134 -------IKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFEL  206 (323)
T ss_pred             -------EEecccHHhccccCCCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence                   55556655443211   11234789999999999998999999999999999999999999987665554443


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAE  409 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  409 (433)
                      +......                                                  ....+++++.+||.+||+.||++
T Consensus       207 ~~~~~~~--------------------------------------------------~p~~~~~~~~~li~~~L~~dP~~  236 (323)
T cd05595         207 ILMEEIR--------------------------------------------------FPRTLSPEAKSLLAGLLKKDPKQ  236 (323)
T ss_pred             HhcCCCC--------------------------------------------------CCCCCCHHHHHHHHHHccCCHHH
Confidence            3221111                                                  11245678999999999999999


Q ss_pred             CC-----CHHHHhcCCCCCCC
Q 013941          410 RL-----KAREALRHPFFTRD  425 (433)
Q Consensus       410 R~-----ta~ell~hp~f~~~  425 (433)
                      |+     ++.++++||||.+.
T Consensus       237 R~~~~~~~~~~~l~h~~~~~~  257 (323)
T cd05595         237 RLGGGPSDAKEVMEHRFFLSI  257 (323)
T ss_pred             hCCCCCCCHHHHHcCCCcCCC
Confidence            98     89999999999863

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=2.5e-47  Score=371.41  Aligned_cols=278  Identities=27%  Similarity=0.413  Sum_probs=212.8

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +|+++++||+|+||.||+|++..+++.||+|++.+..    .....+.+|+.+++.+.|+++     +++++.+.+.+.+
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~i-----v~~~~~~~~~~~~   76 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWV-----VRLYYSFQDKDNL   76 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcC-----CeEEEEEEeCCEE
Confidence            5999999999999999999999999999999987532    234567789999999988877     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||| +|+|.+++.+..  .+++..++.++.||+.||+|||++||+||||||+|||++.+|.++|+|||++......
T Consensus        77 ~lv~E~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~  154 (382)
T cd05625          77 YFVMDYIPGGDMMSLLIRMG--IFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  154 (382)
T ss_pred             EEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCcccccc
Confidence            9999999 999999997754  6899999999999999999999999999999999999999999999999986533211


Q ss_pred             CC--cccCCCCCCCeeeecCCC---------------------Ccc-ccCCCcccccCCcccchhhhhCCCCCccchHHH
Q 013941          248 GS--YFKNLPKSSAIKLIDFGS---------------------TTF-EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWS  303 (433)
Q Consensus       248 ~~--~~~~~~~~~~~kl~Dfg~---------------------a~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS  303 (433)
                      ..  .... .....-...+|..                     +.. ........+||+.|+|||++.+..++.++||||
T Consensus       155 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwS  233 (382)
T cd05625         155 HDSKYYQS-GDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWS  233 (382)
T ss_pred             cccccccc-ccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEe
Confidence            10  0000 0000000001100                     000 000112357999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhh
Q 013941          304 VGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL  383 (433)
Q Consensus       304 lG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (433)
                      |||++|||++|+.||.+.+..+....+.......                      ..                      
T Consensus       234 lGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~----------------------~~----------------------  269 (382)
T cd05625         234 VGVILYEMLVGQPPFLAQTPLETQMKVINWQTSL----------------------HI----------------------  269 (382)
T ss_pred             chHHHHHHHhCCCCCCCCCHHHHHHHHHccCCCc----------------------CC----------------------
Confidence            9999999999999998876655443332211100                      00                      


Q ss_pred             hhhccCCchHHHHHHHHHhcccCCCCCCC---HHHHhcCCCCCCC
Q 013941          384 IMQHVDHSAGDLIDLLQGLLRYDPAERLK---AREALRHPFFTRD  425 (433)
Q Consensus       384 ~~~~~~~~~~~l~~li~~~L~~dP~~R~t---a~ell~hp~f~~~  425 (433)
                        .....+++++.++|.+|+ .||.+|++   ++|+++||||+..
T Consensus       270 --p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~  311 (382)
T cd05625         270 --PPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTI  311 (382)
T ss_pred             --CCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCc
Confidence              011245778999999986 59999997   9999999999863

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.2e-46  Score=359.52  Aligned_cols=298  Identities=23%  Similarity=0.317  Sum_probs=211.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .++|++++.||+|+||.||+|++..++..||+|++...  ......+.+|++++++++|+|+     +++++++..++.+
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~   78 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI-----VGFYGAFYSDGEI   78 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCC-----CeEEEEEEECCEE
Confidence            36799999999999999999999999999999998753  2345678899999999998888     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ++||||+ +++|.+++....  .+++..+..++.|++.||.|||++ +|+||||||+|||++.++               
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~---------------  141 (331)
T cd06649          79 SICMEHMDGGSLDQVLKEAK--RIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRG---------------  141 (331)
T ss_pred             EEEeecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCC---------------
Confidence            9999999 899999998754  689999999999999999999986 699999999999997665               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                  .++|+|||++..... ......||..|+|||++.+..++.++|||||||++|||++|+.||...+..+
T Consensus       142 ------------~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~  209 (331)
T cd06649         142 ------------EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKE  209 (331)
T ss_pred             ------------cEEEccCcccccccccccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                        456666666543322 2233578999999999999899999999999999999999999998766544


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCC-CCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDG-ATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      ....+.....................   .......... ..........................++.++++||.+||+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  286 (331)
T cd06649         210 LEAIFGRPVVDGEEGEPHSISPRPRP---PGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLI  286 (331)
T ss_pred             HHHHhcccccccccCCccccCccccc---ccccccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHcc
Confidence            32222110000000000000000000   0000000000 0000000000000000000000112457799999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||++|||++|+++||||+..
T Consensus       287 ~~P~~Rpt~~ell~h~~~~~~  307 (331)
T cd06649         287 KNPAERADLKMLMNHTFIKRS  307 (331)
T ss_pred             CCcccCCCHHHHhcChHHhhc
Confidence            999999999999999999865

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.6e-48  Score=363.46  Aligned_cols=252  Identities=31%  Similarity=0.552  Sum_probs=224.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEecc---chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe-
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH-  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~-  167 (433)
                      ++|.+++.+|+|+||.+++++++..++.|++|.+.-   ....+....+|+.+++++.||+|     |.+.+.|..++. 
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~i-----v~y~ds~~~~~~~   78 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNI-----VEYKDSFEEDGQL   78 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCe-----eeeccchhcCCce
Confidence            579999999999999999999999999999999864   33455678899999999999988     999999998887 


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +||||+|| ||+|.+.+.+.....++++.+..++.||+.|+.|||+++|+|||||+.|||++.++               
T Consensus        79 l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~---------------  143 (426)
T KOG0589|consen   79 LCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDK---------------  143 (426)
T ss_pred             EEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccC---------------
Confidence            99999999 99999999877767899999999999999999999999999999999999986544               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                  .|+|+|||+|+......   .+.+||+.||.||++.+.+|+.|+|||||||++|||++-+++|.+.+.
T Consensus       144 ------------~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m  211 (426)
T KOG0589|consen  144 ------------KVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNM  211 (426)
T ss_pred             ------------ceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccch
Confidence                        57889999888766543   557999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHh-cCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          324 LEHLAMMERVL-GPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       324 ~~~~~~i~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ......|.+.. .++|                                                  ..++.+++.+|..|
T Consensus       212 ~~Li~ki~~~~~~Plp--------------------------------------------------~~ys~el~~lv~~~  241 (426)
T KOG0589|consen  212 SELILKINRGLYSPLP--------------------------------------------------SMYSSELRSLVKSM  241 (426)
T ss_pred             HHHHHHHhhccCCCCC--------------------------------------------------ccccHHHHHHHHHH
Confidence            88888777654 2332                                                  34577999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCC
Q 013941          403 LRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |..+|..||+|.++|.+|.+...
T Consensus       242 l~~~P~~RPsa~~LL~~P~l~~~  264 (426)
T KOG0589|consen  242 LRKNPEHRPSALELLRRPHLLRY  264 (426)
T ss_pred             hhcCCccCCCHHHHhhChhhhhH
Confidence            99999999999999999988743

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=3.6e-47  Score=361.27  Aligned_cols=243  Identities=26%  Similarity=0.399  Sum_probs=200.2

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|++..+++.||||++.+..    ........|..++..+ .|+++     +++++++...+.+|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i-----v~~~~~~~~~~~~~iv~   75 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFL-----TQLYCCFQTPDRLFFVM   75 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCch-----hceeeEEEcCCEEEEEE
Confidence            46999999999999999999999999987532    2334556788888766 46655     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..+..++.||+.||+|||++||+||||||+|||++.++                    
T Consensus        76 Ey~~~g~L~~~i~~~~--~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~--------------------  133 (320)
T cd05590          76 EFVNGGDLMFHIQKSR--RFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEG--------------------  133 (320)
T ss_pred             cCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCC--------------------
Confidence            999 899999987764  799999999999999999999999999999999999997665                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .++|+|||++....   .......||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+......
T Consensus       134 -------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~  206 (320)
T cd05590         134 -------HCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFE  206 (320)
T ss_pred             -------cEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHH
Confidence                   46666776654321   12233579999999999999899999999999999999999999998877666555


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.......                                                  ....+.++.+||.+||+.||+
T Consensus       207 ~i~~~~~~~--------------------------------------------------~~~~~~~~~~li~~~L~~dP~  236 (320)
T cd05590         207 AILNDEVVY--------------------------------------------------PTWLSQDAVDILKAFMTKNPT  236 (320)
T ss_pred             HHhcCCCCC--------------------------------------------------CCCCCHHHHHHHHHHcccCHH
Confidence            443211111                                                  123467899999999999999


Q ss_pred             CCCCH------HHHhcCCCCCC
Q 013941          409 ERLKA------REALRHPFFTR  424 (433)
Q Consensus       409 ~R~ta------~ell~hp~f~~  424 (433)
                      +|+++      +++++||||+.
T Consensus       237 ~R~~~~~~~~~~~~~~h~~f~~  258 (320)
T cd05590         237 MRLGSLTLGGEEAILRHPFFKE  258 (320)
T ss_pred             HCCCCCCCCCHHHHHcCCCcCC
Confidence            99998      99999999986

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=2.2e-47  Score=371.10  Aligned_cols=277  Identities=24%  Similarity=0.375  Sum_probs=211.3

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +|++++.||+|+||.||+|++..+++.||||++.+..    .....+.+|+.++..+.|+++     +++++.+.+++.+
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~i-----v~~~~~~~~~~~~   76 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWV-----VKLYYSFQDKDNL   76 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCc-----ceEEEEEEcCCEE
Confidence            6999999999999999999999999999999986532    234557789999999998887     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||++......
T Consensus        77 ~lv~E~~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~  154 (376)
T cd05598          77 YFVMDYIPGGDMMSLLIRLG--IFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  154 (376)
T ss_pred             EEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCcccccc
Confidence            9999999 999999998764  6899999999999999999999999999999999999999999999999886432211


Q ss_pred             --CCcccCCCCCCCeeeecCCCC---------------cc---ccCCCcccccCCcccchhhhhCCCCCccchHHHHHHH
Q 013941          248 --GSYFKNLPKSSAIKLIDFGST---------------TF---EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCI  307 (433)
Q Consensus       248 --~~~~~~~~~~~~~kl~Dfg~a---------------~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~i  307 (433)
                        ...+... ........+....               ..   ........+||+.|+|||++.+..++.++|||||||+
T Consensus       155 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvi  233 (376)
T cd05598         155 HDSKYYQKG-DHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI  233 (376)
T ss_pred             ccccccccc-cccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccce
Confidence              0000000 0000000000000               00   0001123579999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhc
Q 013941          308 LVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH  387 (433)
Q Consensus       308 l~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (433)
                      +|||++|+.||.+.+..+....+.......                                              ....
T Consensus       234 lyell~G~~Pf~~~~~~~~~~~i~~~~~~~----------------------------------------------~~~~  267 (376)
T cd05598         234 LYEMLVGQPPFLADTPAETQLKVINWETTL----------------------------------------------HIPS  267 (376)
T ss_pred             eeehhhCCCCCCCCCHHHHHHHHhccCccc----------------------------------------------cCCC
Confidence            999999999998876655443332111000                                              0011


Q ss_pred             cCCchHHHHHHHHHhcccCCCCCC---CHHHHhcCCCCCC
Q 013941          388 VDHSAGDLIDLLQGLLRYDPAERL---KAREALRHPFFTR  424 (433)
Q Consensus       388 ~~~~~~~l~~li~~~L~~dP~~R~---ta~ell~hp~f~~  424 (433)
                      ...++.++.++|.+|+ .+|.+|+   |+.|+++||||+.
T Consensus       268 ~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~  306 (376)
T cd05598         268 QAKLSREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKG  306 (376)
T ss_pred             CCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCC
Confidence            1245778999999976 5999999   9999999999986

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=7.4e-47  Score=359.91  Aligned_cols=250  Identities=24%  Similarity=0.397  Sum_probs=201.6

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      |++++.||+|+||.||+|.+..+++.||||++++..    ...+.+.+|+.++..+.  .+.|+|++++++++.+.+.+|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~--~l~hp~i~~~~~~~~~~~~~~   78 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETAN--SERHPFLVNLFACFQTEDHVC   78 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcc--ccCCCChhceeeEEEcCCEEE
Confidence            788999999999999999999999999999997532    22345566766665432  123344499999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|..++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++                 
T Consensus        79 lv~E~~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~-----------------  138 (324)
T cd05589          79 FVMEYAAGGDLMMHIHTD---VFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEG-----------------  138 (324)
T ss_pred             EEEcCCCCCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCC-----------------
Confidence            999999 99999888653   599999999999999999999999999999999999997665                 


Q ss_pred             CcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .+||+|||++....   .......||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+
T Consensus       139 ----------~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~  208 (324)
T cd05589         139 ----------FVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEE  208 (324)
T ss_pred             ----------cEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHH
Confidence                      45666666654321   12234579999999999999899999999999999999999999998877665


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.......                                                  ...++..+.+||.+||+.
T Consensus       209 ~~~~i~~~~~~~--------------------------------------------------p~~~~~~~~~li~~~L~~  238 (324)
T cd05589         209 VFDSIVNDEVRY--------------------------------------------------PRFLSREAISIMRRLLRR  238 (324)
T ss_pred             HHHHHHhCCCCC--------------------------------------------------CCCCCHHHHHHHHHHhhc
Confidence            554443221111                                                  123467899999999999


Q ss_pred             CCCCCC-----CHHHHhcCCCCCCC
Q 013941          406 DPAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~-----ta~ell~hp~f~~~  425 (433)
                      ||++||     +++++++||||++.
T Consensus       239 dP~~R~~~~~~~~~~l~~~~~f~~~  263 (324)
T cd05589         239 NPERRLGSGEKDAEDVKKQPFFRDI  263 (324)
T ss_pred             CHhHcCCCCCCCHHHHhhCCCcCCC
Confidence            999999     79999999999863

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=6.1e-47  Score=359.04  Aligned_cols=244  Identities=26%  Similarity=0.403  Sum_probs=197.8

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|++..+++.||+|+++...    ........|..++..+ .|+++     +++++++.+.+++|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i-----~~~~~~~~~~~~~~lv~   75 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFL-----THLYCTFQTKEHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCc-----cCeeEEEEeCCEEEEEE
Confidence            47999999999999999999999999997532    2334456677777654 55555     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..+..++.||+.||+|||++||+||||||+|||++.++                    
T Consensus        76 E~~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~--------------------  133 (316)
T cd05620          76 EFLNGGDLMFHIQDKG--RFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDG--------------------  133 (316)
T ss_pred             CCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCC--------------------
Confidence            999 999999987754  689999999999999999999999999999999999997665                    


Q ss_pred             cCCCCCCCeeeecCCCCccc---cCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFE---HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .++|+|||++...   ........||..|+|||++.+..++.++|||||||++|+|++|..||.+.+......
T Consensus       134 -------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~~  206 (316)
T cd05620         134 -------HIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFE  206 (316)
T ss_pred             -------CEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHH
Confidence                   4566666665432   112234579999999999999999999999999999999999999998776655444


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.......                                                  ....+.++.+||.+||+.||+
T Consensus       207 ~~~~~~~~~--------------------------------------------------~~~~~~~~~~li~~~l~~dP~  236 (316)
T cd05620         207 SIRVDTPHY--------------------------------------------------PRWITKESKDILEKLFERDPT  236 (316)
T ss_pred             HHHhCCCCC--------------------------------------------------CCCCCHHHHHHHHHHccCCHH
Confidence            332211111                                                  123466899999999999999


Q ss_pred             CCCCH-HHHhcCCCCCCC
Q 013941          409 ERLKA-REALRHPFFTRD  425 (433)
Q Consensus       409 ~R~ta-~ell~hp~f~~~  425 (433)
                      +|+++ +++++||||...
T Consensus       237 ~R~~~~~~~~~h~~f~~~  254 (316)
T cd05620         237 RRLGVVGNIRGHPFFKTI  254 (316)
T ss_pred             HcCCChHHHHcCCCcCCC
Confidence            99997 589999999874

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=7e-47  Score=365.96  Aligned_cols=254  Identities=25%  Similarity=0.415  Sum_probs=207.2

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|++.+.||+|+||.||+|++..+++.||+|++.+..    .....+.+|+.+++.++|+++     +++++++.+++
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~i-----v~~~~~~~~~~  116 (370)
T cd05596          42 AEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWI-----VQLHYAFQDDK  116 (370)
T ss_pred             HHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCc-----ceEEEEEecCC
Confidence            357999999999999999999999999999999986432    223446689999999988887     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ +++|.+++...   .+++..+..++.||+.||+|||++||+||||||+|||++.++              
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~--------------  179 (370)
T cd05596         117 YLYMVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG--------------  179 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCC--------------
Confidence            999999999 99999998764   589999999999999999999999999999999999997665              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCC----CCCccchHHHHHHHHHHHHhCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGL----GWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~----~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                   .+||+|||++......    .....||+.|+|||++.+.    .++.++|||||||++|||++|..|
T Consensus       180 -------------~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~P  246 (370)
T cd05596         180 -------------HLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTP  246 (370)
T ss_pred             -------------CEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCC
Confidence                         4666677666543221    1235799999999998754    378999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+.......+......                      ..++.                        ...++.++.+
T Consensus       247 f~~~~~~~~~~~i~~~~~~----------------------~~~~~------------------------~~~~s~~~~~  280 (370)
T cd05596         247 FYADSLVGTYSKIMDHKNS----------------------LTFPD------------------------DIEISKQAKD  280 (370)
T ss_pred             cCCCCHHHHHHHHHcCCCc----------------------CCCCC------------------------cCCCCHHHHH
Confidence            9887765554444321110                      01111                        1235779999


Q ss_pred             HHHHhcccCCCC--CCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAE--RLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~--R~ta~ell~hp~f~~~  425 (433)
                      ||.+||+.+|.+  |+|++|+++||||++.
T Consensus       281 li~~~L~~~p~r~~R~s~~ell~h~~~~~~  310 (370)
T cd05596         281 LICAFLTDREVRLGRNGVDEIKSHPFFKND  310 (370)
T ss_pred             HHHHHccChhhccCCCCHHHHhcCcccCCC
Confidence            999999999988  9999999999999863

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=3.2e-47  Score=362.54  Aligned_cols=244  Identities=25%  Similarity=0.422  Sum_probs=201.0

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      +.||+|+||.||+|++..+++.||+|++....    .......+|+.++..+.|+++     +++++++...+.+|+|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i-----~~~~~~~~~~~~~~lv~E   75 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFL-----TALKYSFQTHDRLCFVME   75 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCC-----CceEEEEEcCCEEEEEEe
Confidence            46899999999999999999999999997532    223456678899999888877     999999999999999999


Q ss_pred             cC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          174 KL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      |+ +++|..++....  .+++..++.++.||+.||+|||+ +||+||||||+|||++.++                    
T Consensus        76 ~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~--------------------  133 (325)
T cd05594          76 YANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDG--------------------  133 (325)
T ss_pred             CCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCC--------------------
Confidence            99 999999887654  79999999999999999999997 7999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .+||+|||++.....   ......||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+......
T Consensus       134 -------~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~  206 (325)
T cd05594         134 -------HIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFE  206 (325)
T ss_pred             -------CEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHH
Confidence                   467777776653211   1223579999999999999899999999999999999999999998766554443


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+......                                                  ....+++++.+||.+||+.||+
T Consensus       207 ~i~~~~~~--------------------------------------------------~p~~~~~~~~~li~~~L~~dP~  236 (325)
T cd05594         207 LILMEEIR--------------------------------------------------FPRTLSPEAKSLLSGLLKKDPK  236 (325)
T ss_pred             HHhcCCCC--------------------------------------------------CCCCCCHHHHHHHHHHhhcCHH
Confidence            33221111                                                  1123467899999999999999


Q ss_pred             CCC-----CHHHHhcCCCCCCC
Q 013941          409 ERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       409 ~R~-----ta~ell~hp~f~~~  425 (433)
                      +|+     ++.++++||||.+.
T Consensus       237 ~R~~~~~~~~~~il~h~~~~~~  258 (325)
T cd05594         237 QRLGGGPDDAKEIMQHKFFAGI  258 (325)
T ss_pred             HhCCCCCCCHHHHhcCCCcCCC
Confidence            997     99999999999863

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=8.3e-47  Score=359.08  Aligned_cols=243  Identities=22%  Similarity=0.362  Sum_probs=200.1

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|++..+++.||+|++.+..    ........|..++..+ .|+++     +++++++.+.+.+|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i-----~~~~~~~~~~~~~~lv~   75 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFL-----TALHCCFQTKDRLFFVM   75 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCc-----cceeeEEEcCCeEEEEE
Confidence            46999999999999999999999999987532    2334556788888765 45555     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|..++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++                    
T Consensus        76 E~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~--------------------  133 (321)
T cd05591          76 EYVNGGDLMFQIQRSR--KFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEG--------------------  133 (321)
T ss_pred             eCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC--------------------
Confidence            999 899999987654  799999999999999999999999999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .++|+|||++....   .......||..|+|||++.+..++.++|||||||++|+|++|+.||.+.+......
T Consensus       134 -------~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~~~  206 (321)
T cd05591         134 -------HCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFE  206 (321)
T ss_pred             -------CEEEeecccceecccCCccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHHHHHH
Confidence                   46677777665321   11233578999999999999899999999999999999999999999877666555


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.......                                                  ....+.++.+||.+||+.||+
T Consensus       207 ~i~~~~~~~--------------------------------------------------p~~~~~~~~~ll~~~L~~dp~  236 (321)
T cd05591         207 SILHDDVLY--------------------------------------------------PVWLSKEAVSILKAFMTKNPN  236 (321)
T ss_pred             HHHcCCCCC--------------------------------------------------CCCCCHHHHHHHHHHhccCHH
Confidence            443321111                                                  122466899999999999999


Q ss_pred             CCC-------CHHHHhcCCCCCC
Q 013941          409 ERL-------KAREALRHPFFTR  424 (433)
Q Consensus       409 ~R~-------ta~ell~hp~f~~  424 (433)
                      +|+       +++++++||||..
T Consensus       237 ~R~~~~~~~~~~~~~~~hp~~~~  259 (321)
T cd05591         237 KRLGCVASQGGEDAIKQHPFFKE  259 (321)
T ss_pred             HcCCCCCCCCCHHHHhcCCccCC
Confidence            999       9999999999976

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=2.2e-46  Score=356.53  Aligned_cols=249  Identities=25%  Similarity=0.379  Sum_probs=204.0

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +|++.+.||+|+||.||+|++..+++.||+|++.+..    ........|..++..+.|+    ++++.+++++...+.+
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~----~~i~~~~~~~~~~~~~   76 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKP----PFLTQLHSCFQTMDRL   76 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCC----CeEeeEEEEEecCCEE
Confidence            4889999999999999999999999999999987532    2223455677777776543    4458899999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++....  .+++..+..++.||+.||+|||++||+||||||+|||++.++                
T Consensus        77 ~lv~E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~----------------  138 (323)
T cd05616          77 YFVMEYVNGGDLMYQIQQVG--RFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEG----------------  138 (323)
T ss_pred             EEEEcCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCC----------------
Confidence            9999999 999999987664  699999999999999999999999999999999999997665                


Q ss_pred             CCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                 .+||+|||++....   .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..
T Consensus       139 -----------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~  207 (323)
T cd05616         139 -----------HIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED  207 (323)
T ss_pred             -----------cEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHH
Confidence                       46666666665321   1223357999999999999999999999999999999999999999887766


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+......+                                                  +...+.++.+||.+||+
T Consensus       208 ~~~~~i~~~~~~~--------------------------------------------------p~~~s~~~~~li~~~l~  237 (323)
T cd05616         208 ELFQSIMEHNVAY--------------------------------------------------PKSMSKEAVAICKGLMT  237 (323)
T ss_pred             HHHHHHHhCCCCC--------------------------------------------------CCcCCHHHHHHHHHHcc
Confidence            6555444322111                                                  12346789999999999


Q ss_pred             cCCCCCCC-----HHHHhcCCCCCC
Q 013941          405 YDPAERLK-----AREALRHPFFTR  424 (433)
Q Consensus       405 ~dP~~R~t-----a~ell~hp~f~~  424 (433)
                      .||++|++     ..++++||||+.
T Consensus       238 ~~p~~R~~~~~~~~~~i~~h~~~~~  262 (323)
T cd05616         238 KHPGKRLGCGPEGERDIKEHAFFRY  262 (323)
T ss_pred             cCHHhcCCCCCCCHHHHhcCCCcCC
Confidence            99999997     489999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=1.2e-46  Score=364.00  Aligned_cols=254  Identities=24%  Similarity=0.413  Sum_probs=205.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|++.+.||+|+||.||+|++..+++.||+|++.+..    .....+.+|+.+++.+.|+++     +++++++.+++
T Consensus        42 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~i-----v~~~~~~~~~~  116 (370)
T cd05621          42 AEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWV-----VQLFCAFQDDK  116 (370)
T ss_pred             HHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCE-----eeEEEEEEcCC
Confidence            468999999999999999999999999999999986422    223456789999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ +++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++              
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~--------------  179 (370)
T cd05621         117 YLYMVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHG--------------  179 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCC--------------
Confidence            999999999 99999999754   589999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCC----CCccchHHHHHHHHHHHHhCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~----~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                   .+||+|||++......    ....+||+.|+|||++.+..    ++.++|||||||++|+|++|..|
T Consensus       180 -------------~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~P  246 (370)
T cd05621         180 -------------HLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTP  246 (370)
T ss_pred             -------------CEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCC
Confidence                         4677777766543221    12457999999999997643    78999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+.......+......                      ..++.                        ...++..+++
T Consensus       247 f~~~~~~~~~~~i~~~~~~----------------------~~~p~------------------------~~~~s~~~~~  280 (370)
T cd05621         247 FYADSLVGTYSKIMDHKNS----------------------LNFPE------------------------DVEISKHAKN  280 (370)
T ss_pred             CCCCCHHHHHHHHHhCCcc----------------------cCCCC------------------------cccCCHHHHH
Confidence            9887765555444331110                      11111                        1234678999


Q ss_pred             HHHHhcccCCCC--CCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAE--RLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~--R~ta~ell~hp~f~~~  425 (433)
                      +|.+||..++.+  |+|+.|+++||||+..
T Consensus       281 li~~~L~~~~~r~~R~~~~e~l~hp~~~~~  310 (370)
T cd05621         281 LICAFLTDREVRLGRNGVEEIKQHPFFKND  310 (370)
T ss_pred             HHHHHccCchhccCCCCHHHHhcCcccCCC
Confidence            999999865544  8899999999999863

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=8.1e-46  Score=357.00  Aligned_cols=304  Identities=27%  Similarity=0.459  Sum_probs=231.3

Q ss_pred             CceeeecCC---ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCc
Q 013941           80 GHYVFAIGE---NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        80 ~~~~~~~~~---~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      ++|++..|+   .+.++|++.+.||+|+||.||+|.+..+++.||+|++.+.   ......+.+|+.+++++.|+++   
T Consensus         1 ~~~~~~~~~~~~~~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i---   77 (353)
T cd07850           1 QFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNI---   77 (353)
T ss_pred             CceeecccchhhhhhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCC---
Confidence            356677766   5578999999999999999999999999999999998642   2333556789999999999887   


Q ss_pred             ceeEecceeccC------CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEE
Q 013941          154 RCVQIRNWFDYR------NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILL  227 (433)
Q Consensus       154 ~~v~~~~~~~~~------~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli  227 (433)
                        +++++++...      ...|+||||+.++|.+.+..    .+++..+..++.||+.||+|||++||+||||||+||++
T Consensus        78 --v~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~  151 (353)
T cd07850          78 --IGLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQM----DLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV  151 (353)
T ss_pred             --cceeeeeccCCCccccCcEEEEEeccCCCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEE
Confidence              8888877543      46799999998899988864    38899999999999999999999999999999999999


Q ss_pred             eeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHH
Q 013941          228 VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVG  305 (433)
Q Consensus       228 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  305 (433)
                      +.++                           .++|+|||++.......  ....+|..|+|||++.+..++.++||||||
T Consensus       152 ~~~~---------------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG  204 (353)
T cd07850         152 KSDC---------------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG  204 (353)
T ss_pred             CCCC---------------------------CEEEccCccceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHH
Confidence            7655                           46666776665433222  224678899999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          306 CILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       306 ~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      |++|+|++|+.||...+.......+...++.++..+..........+...........       ..........+....
T Consensus       205 ~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  277 (353)
T cd07850         205 CIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYS-------FEELFPDVLFPPDSE  277 (353)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcc-------hhhhCcccccCcccc
Confidence            9999999999999988888888888888888887776655444333332211110000       000000000001111


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ......+..+++||.+||+.||++|||+.|+|+||||+...
T Consensus       278 ~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~~~  318 (353)
T cd07850         278 SHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINVWY  318 (353)
T ss_pred             cccccchhHHHHHHHHHcCCChhhCcCHHHHhcChhHhhcc
Confidence            11234467889999999999999999999999999997543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=8.3e-47  Score=360.63  Aligned_cols=253  Identities=27%  Similarity=0.427  Sum_probs=206.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||+||+|++..+++.||+|+++....    ....+.+|+.+++.+.|+++     +++++++.+.+.
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i-----~~~~~~~~~~~~   75 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWI-----PQLQYAFQDKDN   75 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCC-----cceeeEEecCCe
Confidence            369999999999999999999999999999999975432    34556788999998888877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~---------------  139 (330)
T cd05601          76 LYLVMEYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTG---------------  139 (330)
T ss_pred             EEEEECCCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCC---------------
Confidence            99999999 999999998753 3699999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhh------CCCCCccchHHHHHHHHHHHHhCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVIL------GLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~------~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                  .+||+|||++.......    ....||+.|+|||++.      +..++.++|||||||++|+|++|..
T Consensus       140 ------------~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~  207 (330)
T cd05601         140 ------------HIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRS  207 (330)
T ss_pred             ------------CEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCC
Confidence                        46667777665433221    2247899999999987      4467899999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||...+.......+.....                      ...++                        ....++.++.
T Consensus       208 Pf~~~~~~~~~~~i~~~~~----------------------~~~~~------------------------~~~~~~~~~~  241 (330)
T cd05601         208 PFHEGTSAKTYNNIMNFQR----------------------FLKFP------------------------EDPKVSSDFL  241 (330)
T ss_pred             CCCCCCHHHHHHHHHcCCC----------------------ccCCC------------------------CCCCCCHHHH
Confidence            9987766554444332110                      00011                        1123567899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      +||.+||+ ||++|+|++++++||||++
T Consensus       242 ~li~~ll~-~p~~R~t~~~l~~h~~~~~  268 (330)
T cd05601         242 DLIQSLLC-GQKERLGYEGLCCHPFFSK  268 (330)
T ss_pred             HHHHHHcc-ChhhCCCHHHHhCCCCcCC
Confidence            99999998 9999999999999999986

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.6e-46  Score=348.78  Aligned_cols=254  Identities=24%  Similarity=0.389  Sum_probs=207.0

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +|++.+.||+|+||.||++.+..+++.||+|++....    .....+.+|+.+++.++|+++     +.+++.+..++.+
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~   75 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFV-----VSLAYAYETKDAL   75 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCE-----eeeeeeecCCCeE
Confidence            4899999999999999999999999999999986432    122446679999999988877     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++.......+++..+..++.||+.||.|||++||+||||||+||++++++                
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~----------------  139 (285)
T cd05605          76 CLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYG----------------  139 (285)
T ss_pred             EEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCC----------------
Confidence            9999999 89999988765445699999999999999999999999999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                 .++|+|||++.......  ....||..|+|||++.+..++.++||||+||++|+|++|..||.+.....
T Consensus       140 -----------~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~  208 (285)
T cd05605         140 -----------HIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKV  208 (285)
T ss_pred             -----------CEEEeeCCCceecCCCCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhh
Confidence                       46677777665432221  23478999999999998889999999999999999999999998765543


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.......+                                              ......++..+.+||.+||+.
T Consensus       209 ~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~li~~~l~~  242 (285)
T cd05605         209 KREEVERRVKEDQ----------------------------------------------EEYSEKFSEAARSICRQLLTK  242 (285)
T ss_pred             HHHHHHHHhhhcc----------------------------------------------cccCcccCHHHHHHHHHHccC
Confidence            3333322111000                                              011233567899999999999


Q ss_pred             CCCCCC-----CHHHHhcCCCCCC
Q 013941          406 DPAERL-----KAREALRHPFFTR  424 (433)
Q Consensus       406 dP~~R~-----ta~ell~hp~f~~  424 (433)
                      ||++||     +++++++||||..
T Consensus       243 ~P~~R~~~~~~~~~~l~~~~~~~~  266 (285)
T cd05605         243 DPGFRLGCRGEGAEEVKAHPFFRT  266 (285)
T ss_pred             CHHHhcCCCCCCHHHHhcCcCccC
Confidence            999999     9999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=6e-46  Score=352.77  Aligned_cols=283  Identities=25%  Similarity=0.464  Sum_probs=203.6

Q ss_pred             eccccccccEEEEEEEec--CCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--CCeEEEEE
Q 013941           97 LSKMGEGTFGQVVECFDN--EKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--RNHICIVF  172 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--~~~~~lv~  172 (433)
                      .++||+|+||+||+|++.  .+++.||+|.+.... ......+|+.++++++|+|+     +++++++..  +..+|+||
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~~~~~~lv~   79 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG-ISMSACREIALLRELKHPNV-----ISLQKVFLSHADRKVWLLF   79 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC-CcHHHHHHHHHHHhcCCCCC-----cceeeeEecCCCcEEEEEE
Confidence            468999999999999965  467899999986533 23456789999999999888     999888753  56799999


Q ss_pred             ccCCCCHHHHHHhcC-------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          173 EKLGPSLYDFLRKNS-------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       173 e~~~~~L~~~l~~~~-------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ||++++|.+++....       ...+++..++.++.||+.||+|||++||+||||||+|||+...+              
T Consensus        80 e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~--------------  145 (317)
T cd07868          80 DYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEG--------------  145 (317)
T ss_pred             eccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCC--------------
Confidence            999889998886321       12589999999999999999999999999999999999995432              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                               +....+||+|||++......      .....||+.|+|||++.+. .++.++|||||||++|+|++|++||
T Consensus       146 ---------~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f  216 (317)
T cd07868         146 ---------PERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF  216 (317)
T ss_pred             ---------CCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCc
Confidence                     23446888888888654322      1235789999999999874 5899999999999999999999999


Q ss_pred             CCCCh---------HHHHHHHHHHhcCCChhhHHhhhhhhhh--hhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhc
Q 013941          319 QTHEN---------LEHLAMMERVLGPLPHHMVIRADRRAEK--YFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH  387 (433)
Q Consensus       319 ~~~~~---------~~~~~~i~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (433)
                      .....         ...+..+...++.++...+.........  .........+.              ...........
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~  282 (317)
T cd07868         217 HCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYT--------------NCSLIKYMEKH  282 (317)
T ss_pred             cCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhhhhccccC--------------cccccchHHhc
Confidence            75432         2445556666655444332221100000  00000000000              00000000111


Q ss_pred             cCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       388 ~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ....+.++.+||.+||++||++|+|++|+|+||||
T Consensus       283 ~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         283 KVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             CCCCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            12235578999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.9e-45  Score=362.01  Aligned_cols=275  Identities=25%  Similarity=0.353  Sum_probs=201.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ..+|.+.+.||+|+||.||+|.+..+++.||||....     ....+|+.++++++|+||     +++++++..++..|+
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~-----~~~~~E~~iL~~L~HpnI-----v~l~~~~~~~~~~~l  237 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY-----ASSVHEARLLRRLSHPAV-----LALLDVRVVGGLTCL  237 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc-----cCHHHHHHHHHHCCCCCC-----CcEEEEEEECCEEEE
Confidence            4579999999999999999999999999999996432     235679999999999888     999999999999999


Q ss_pred             EEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          171 VFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       171 v~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||++.++|.+++.... ..+++..++.++.||+.||.|||++|||||||||+|||++.++                   
T Consensus       238 v~e~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~-------------------  297 (461)
T PHA03211        238 VLPKYRSDLYTYLGARL-RPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPE-------------------  297 (461)
T ss_pred             EEEccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCC-------------------
Confidence            99999889999887643 3699999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC---
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE---  322 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~---  322 (433)
                              .++|+|||++......     .....||..|+|||++.+..++.++|||||||+||||++|..++....   
T Consensus       298 --------~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~  369 (461)
T PHA03211        298 --------DICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGD  369 (461)
T ss_pred             --------CEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCccc
Confidence                    4566666666543221     122479999999999999999999999999999999999876543221   


Q ss_pred             ----hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHH---hcCch---hhhhhccCCch
Q 013941          323 ----NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK---LLRLP---NLIMQHVDHSA  392 (433)
Q Consensus       323 ----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~  392 (433)
                          ....+..+.+.......                    .++.....+ .......   ....+   ..........+
T Consensus       370 ~~~~~~~~l~~~i~~~~~~~~--------------------~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (461)
T PHA03211        370 ERRPYDAQILRIIRQAQVHVD--------------------EFPQHAGSR-LVSQYRHRAARNRRPAYTRPAWTRYYKLD  428 (461)
T ss_pred             ccCCcHHHHHHHHHhhccccc--------------------cCCCCcchH-HHHHHHhhhhcccCCccCCcchhhhcccc
Confidence                11223333222111100                    000000000 0000000   00000   00000111345


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      .++.+||.+||++||++|||+.|||+||||++
T Consensus       429 ~~~~dli~~mL~~DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        429 LDVEYLVCRALTFDGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             chHHHHHHHHcccChhhCcCHHHHhhCcccCC
Confidence            68999999999999999999999999999975

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=1.2e-46  Score=363.74  Aligned_cols=276  Identities=25%  Similarity=0.387  Sum_probs=212.0

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .|++++.||+|+||.||+|++..+++.||+|+++...    .....+..|+.++..+.|+++     +++++.+.+.+.+
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----v~~~~~~~~~~~~   76 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWV-----VKMFYSFQDKRNL   76 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCE-----eeEEEEEEcCCEE
Confidence            5999999999999999999999999999999997432    233556779999999888777     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++.+..  .+++..++.++.||+.||+|||++||+||||||+|||++.+|.++|+|||++......
T Consensus        77 ~lv~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~  154 (360)
T cd05627          77 YLIMEFLPGGDMMTLLMKKD--TLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKA  154 (360)
T ss_pred             EEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccc
Confidence            9999999 999999998764  6999999999999999999999999999999999999999999999999987644322


Q ss_pred             CCc--ccCCCCCCCeeeecCCCCcc------------ccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh
Q 013941          248 GSY--FKNLPKSSAIKLIDFGSTTF------------EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       248 ~~~--~~~~~~~~~~kl~Dfg~a~~------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  313 (433)
                      ...  ......   ..-.++.+...            ........+||+.|+|||++.+..++.++|||||||++|||++
T Consensus       155 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~t  231 (360)
T cd05627         155 HRTEFYRNLTH---NPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLI  231 (360)
T ss_pred             ccccccccccc---CCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeeccc
Confidence            110  000000   00011111000            0001123579999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      |..||.+.+.......+......                      ..++                        .....+.
T Consensus       232 G~~Pf~~~~~~~~~~~i~~~~~~----------------------~~~p------------------------~~~~~s~  265 (360)
T cd05627         232 GYPPFCSETPQETYRKVMNWKET----------------------LVFP------------------------PEVPISE  265 (360)
T ss_pred             CCCCCCCCCHHHHHHHHHcCCCc----------------------eecC------------------------CCCCCCH
Confidence            99999887765554444321100                      0000                        0112467


Q ss_pred             HHHHHHHHhcccCCCCCC---CHHHHhcCCCCCCC
Q 013941          394 DLIDLLQGLLRYDPAERL---KAREALRHPFFTRD  425 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~---ta~ell~hp~f~~~  425 (433)
                      ++++||.+|+. ||.+|+   +++|+++||||++.
T Consensus       266 ~~~~li~~l~~-~p~~R~~~~~~~ei~~hp~f~~~  299 (360)
T cd05627         266 KAKDLILRFCT-DSENRIGSNGVEEIKSHPFFEGV  299 (360)
T ss_pred             HHHHHHHHhcc-ChhhcCCCCCHHHHhcCCCCCCC
Confidence            89999999874 999998   58999999999863

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=2.7e-46  Score=354.55  Aligned_cols=244  Identities=25%  Similarity=0.396  Sum_probs=197.9

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||+||+|++..+++.||||+++...    ........|..++..+ .|+++     +++++++.+.+.+|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i-----v~~~~~~~~~~~~~lv~   75 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFL-----THLYCTFQTKENLFFVM   75 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcC-----cceEEEEEeCCEEEEEE
Confidence            46999999999999999999999999987532    2234455677777654 56666     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..+..++.||+.||.|||++||+||||||+|||++.++                    
T Consensus        76 ey~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~--------------------  133 (316)
T cd05619          76 EYLNGGDLMFHIQSCH--KFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDG--------------------  133 (316)
T ss_pred             eCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCC--------------------
Confidence            999 999999998654  689999999999999999999999999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .++|+|||++....   .......||..|+|||++.+..++.++|||||||++|+|++|..||.+.+..+...
T Consensus       134 -------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~  206 (316)
T cd05619         134 -------HIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELFQ  206 (316)
T ss_pred             -------CEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence                   46666776654321   12233578999999999999899999999999999999999999998776655444


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.......                                                  ....+.++.+||.+||+.||+
T Consensus       207 ~i~~~~~~~--------------------------------------------------~~~~~~~~~~li~~~l~~~P~  236 (316)
T cd05619         207 SIRMDNPCY--------------------------------------------------PRWLTREAKDILVKLFVREPE  236 (316)
T ss_pred             HHHhCCCCC--------------------------------------------------CccCCHHHHHHHHHHhccCHh
Confidence            332211000                                                  122466889999999999999


Q ss_pred             CCCCHH-HHhcCCCCCCC
Q 013941          409 ERLKAR-EALRHPFFTRD  425 (433)
Q Consensus       409 ~R~ta~-ell~hp~f~~~  425 (433)
                      +|+++. ++++||||++.
T Consensus       237 ~R~~~~~~l~~h~~~~~~  254 (316)
T cd05619         237 RRLGVKGDIRQHPFFREI  254 (316)
T ss_pred             hcCCChHHHHcCcccCCC
Confidence            999996 89999999873

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=2.9e-46  Score=354.36  Aligned_cols=244  Identities=27%  Similarity=0.393  Sum_probs=197.4

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|++..+++.||+|+++...    ...+....|..++..+ .|++|     +++++++..++.+|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i-----~~~~~~~~~~~~~~lv~   75 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFL-----THLFCTFQTKEHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCc-----cceeeEEEcCCEEEEEE
Confidence            46999999999999999999999999987532    2233445566666544 45555     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++                    
T Consensus        76 e~~~gg~L~~~~~~~~--~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~--------------------  133 (316)
T cd05592          76 EYLNGGDLMFHIQSSG--RFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDG--------------------  133 (316)
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCC--------------------
Confidence            999 999999997654  799999999999999999999999999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+...
T Consensus       134 -------~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~~~~  206 (316)
T cd05592         134 -------HIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELFD  206 (316)
T ss_pred             -------CEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence                   46777777765322   12233579999999999999899999999999999999999999998877655554


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+......+                                                  ...++.++.+||.+||+.||+
T Consensus       207 ~i~~~~~~~--------------------------------------------------~~~~~~~~~~ll~~~l~~~P~  236 (316)
T cd05592         207 SILNDRPHF--------------------------------------------------PRWISKEAKDCLSKLFERDPT  236 (316)
T ss_pred             HHHcCCCCC--------------------------------------------------CCCCCHHHHHHHHHHccCCHH
Confidence            443211111                                                  123466889999999999999


Q ss_pred             CCCCH-HHHhcCCCCCCC
Q 013941          409 ERLKA-REALRHPFFTRD  425 (433)
Q Consensus       409 ~R~ta-~ell~hp~f~~~  425 (433)
                      +|+++ .++++||||...
T Consensus       237 ~R~~~~~~l~~h~~~~~~  254 (316)
T cd05592         237 KRLGVDGDIRQHPFFRGI  254 (316)
T ss_pred             HcCCChHHHHcCcccCCC
Confidence            99986 589999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=5e-46  Score=355.26  Aligned_cols=296  Identities=23%  Similarity=0.335  Sum_probs=211.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .++|++.++||+|+||.||+|.+..++..+|+|++...  ......+.+|+++++.++|+|+     +++++++..++.+
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~   78 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI-----VGFYGAFYSDGEI   78 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcc-----cceeEEEEECCEE
Confidence            46799999999999999999999999999999988643  2344668899999999998887     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ++||||+ +++|.+++....  .+++..+..++.||+.||.|||++ +|+||||||+|||++.++               
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~---------------  141 (333)
T cd06650          79 SICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG---------------  141 (333)
T ss_pred             EEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCC---------------
Confidence            9999999 999999998754  689999999999999999999985 799999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                  .+||+|||++..... ......||..|+|||++.+..++.++|||||||++|+|++|+.||......+
T Consensus       142 ------------~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~  209 (333)
T cd06650         142 ------------EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKE  209 (333)
T ss_pred             ------------CEEEeeCCcchhhhhhccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhH
Confidence                        467777777654322 2233578999999999998889999999999999999999999998665433


Q ss_pred             HHHHHHHHh-cCCChhhHHhhhhhhhhhhcCCccc-cCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          326 HLAMMERVL-GPLPHHMVIRADRRAEKYFRRGARL-DWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       326 ~~~~i~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ....+.... +..+...     .. .......... .+..............................+.++++||.+||
T Consensus       210 ~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L  283 (333)
T cd06650         210 LELMFGCPVEGDPAESE-----TS-PRPRPPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSGVFGAEFQDFVNKCL  283 (333)
T ss_pred             HHHHhcCcccCCccccc-----cC-cccCCccchhhhhcccccccccHHHHHHHHhcCCCccCCCCCcCHHHHHHHHHhc
Confidence            322221110 1100000     00 0000000000 00000000000000111000000000011235678999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCCc
Q 013941          404 RYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ++||++|||+.|+++||||+...
T Consensus       284 ~~~P~~Rpt~~ell~h~~~~~~~  306 (333)
T cd06650         284 IKNPAERADLKQLMVHAFIKRSE  306 (333)
T ss_pred             cCCcccCcCHHHHhhCHHHhcCc
Confidence            99999999999999999998753

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=2.5e-46  Score=355.26  Aligned_cols=244  Identities=25%  Similarity=0.380  Sum_probs=199.9

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|.+..+++.||||++++..    .......+|+.++..+ .|+++     +++++++.+.+.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i-----~~~~~~~~~~~~~~lv~   75 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFL-----TQLHSCFQTKDRLFFVM   75 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCc-----cceeeEEEcCCEEEEEE
Confidence            46999999999999999999999999997532    2334556788888877 35555     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..+..++.||+.||.|||++||+||||||+|||++.++                    
T Consensus        76 e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~--------------------  133 (318)
T cd05570          76 EYVNGGDLMFHIQRSG--RFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEG--------------------  133 (318)
T ss_pred             cCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCC--------------------
Confidence            999 999999987764  799999999999999999999999999999999999997665                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .++|+|||++....   ......+||..|+|||++.+..++.++|||||||++|+|++|..||.+.+......
T Consensus       134 -------~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~~  206 (318)
T cd05570         134 -------HIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQ  206 (318)
T ss_pred             -------cEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHHH
Confidence                   45666666654321   11223578999999999999999999999999999999999999998776555444


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+......                                                  .....+..+.+||.+||+.||+
T Consensus       207 ~i~~~~~~--------------------------------------------------~~~~~~~~~~~li~~~l~~dP~  236 (318)
T cd05570         207 SILEDEVR--------------------------------------------------YPRWLSKEAKSILKSFLTKNPE  236 (318)
T ss_pred             HHHcCCCC--------------------------------------------------CCCcCCHHHHHHHHHHccCCHH
Confidence            33221110                                                  1123467899999999999999


Q ss_pred             CCCCH-----HHHhcCCCCCCC
Q 013941          409 ERLKA-----REALRHPFFTRD  425 (433)
Q Consensus       409 ~R~ta-----~ell~hp~f~~~  425 (433)
                      +|||+     .++++||||+..
T Consensus       237 ~R~s~~~~~~~~ll~~~~~~~~  258 (318)
T cd05570         237 KRLGCLPTGEQDIKGHPFFREI  258 (318)
T ss_pred             HcCCCCCCCHHHHhcCCCcCCC
Confidence            99999     999999999873

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=2.4e-46  Score=357.75  Aligned_cols=253  Identities=27%  Similarity=0.419  Sum_probs=198.9

Q ss_pred             CeEEeccccccccEEEEEEEec---CCCcEEEEEEeccch-----hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceec
Q 013941           93 RYRILSKMGEGTFGQVVECFDN---EKKELVAIKIVRSIN-----KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~  163 (433)
                      +|++++.||+|+||.||+|++.   .+++.||+|++.+..     ...+....|+.++..+. |+++     +++++++.
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i-----~~~~~~~~   75 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFL-----VTLHYAFQ   75 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCc-----ccEEEEEe
Confidence            4899999999999999999864   478999999986432     22345677999999885 5555     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      .++.+++||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++           
T Consensus        76 ~~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~-----------  142 (332)
T cd05614          76 TEAKLHLILDYVSGGEMFTHLYQRD--NFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEG-----------  142 (332)
T ss_pred             cCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCC-----------
Confidence            999999999999 999999997654  699999999999999999999999999999999999997655           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccC----CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ----DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~----~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                      .+||+|||++.....    ......||..|+|||++.+. .++.++|||||||++|||++|..|
T Consensus       143 ----------------~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~p  206 (332)
T cd05614         143 ----------------HVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASP  206 (332)
T ss_pred             ----------------CEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCC
Confidence                            466777776653221    11235799999999999875 478999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...........+......                                              ........++..+.+
T Consensus       207 f~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~  240 (332)
T cd05614         207 FTLEGERNTQSEVSRRILK----------------------------------------------CDPPFPSFIGPEAQD  240 (332)
T ss_pred             CCCCCCCCCHHHHHHHHhc----------------------------------------------CCCCCCCCCCHHHHH
Confidence            9653322111111110000                                              000112345778999


Q ss_pred             HHHHhcccCCCCCC-----CHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~-----ta~ell~hp~f~~~  425 (433)
                      ||.+||+.||++|+     +++++++||||++.
T Consensus       241 li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~  273 (332)
T cd05614         241 LLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGL  273 (332)
T ss_pred             HHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence            99999999999999     88999999999863

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=4.7e-46  Score=354.03  Aligned_cols=250  Identities=25%  Similarity=0.378  Sum_probs=204.6

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .|++.+.||+|+||.||+|++..+++.||+|++.+..    ...+....|+.++..+.|++    +++++++++.+.+.+
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~----~i~~~~~~~~~~~~~   76 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPP----FLTQLHSCFQTVDRL   76 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCC----chhheeeEEecCCEE
Confidence            3788999999999999999999999999999987532    22345667888888877653    347888999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                
T Consensus        77 ~lv~Ey~~~g~L~~~i~~~~--~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~----------------  138 (323)
T cd05615          77 YFVMEYVNGGDLMYHIQQVG--KFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEG----------------  138 (323)
T ss_pred             EEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC----------------
Confidence            9999999 999999997764  699999999999999999999999999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                 .++|+|||++.....   ......||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..
T Consensus       139 -----------~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~  207 (323)
T cd05615         139 -----------HIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDED  207 (323)
T ss_pred             -----------CEEEeccccccccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHH
Confidence                       466777776653221   122357899999999999989999999999999999999999999887765


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+.......                                                  ....+.++.+++.+||+
T Consensus       208 ~~~~~i~~~~~~~--------------------------------------------------p~~~~~~~~~li~~~l~  237 (323)
T cd05615         208 ELFQSIMEHNVSY--------------------------------------------------PKSLSKEAVSICKGLMT  237 (323)
T ss_pred             HHHHHHHhCCCCC--------------------------------------------------CccCCHHHHHHHHHHcc
Confidence            5554443321111                                                  12346688999999999


Q ss_pred             cCCCCCCC-----HHHHhcCCCCCCC
Q 013941          405 YDPAERLK-----AREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~t-----a~ell~hp~f~~~  425 (433)
                      .||++|++     .+++++||||+..
T Consensus       238 ~~p~~R~~~~~~~~~~i~~h~~f~~~  263 (323)
T cd05615         238 KHPSKRLGCGPEGERDIREHAFFRRI  263 (323)
T ss_pred             cCHhhCCCCCCCCHHHHhcCcccCCC
Confidence            99999997     5799999999963

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2e-46  Score=356.68  Aligned_cols=245  Identities=25%  Similarity=0.407  Sum_probs=201.1

Q ss_pred             eccccccccEEEEEEEec---CCCcEEEEEEeccch-----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           97 LSKMGEGTFGQVVECFDN---EKKELVAIKIVRSIN-----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++.||+|+||.||+|++.   .+++.||+|+++...     .....+..|+.+++.+.|+||     +++++++..++.+
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i-----v~~~~~~~~~~~~   75 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFI-----VDLIYAFQTGGKL   75 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCch-----hceeeEEecCCeE
Confidence            368999999999999864   478899999987532     223456689999999998887     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~----------------  137 (323)
T cd05584          76 YLILEYLSGGELFMHLEREG--IFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQG----------------  137 (323)
T ss_pred             EEEEeCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC----------------
Confidence            9999999 899999997764  689999999999999999999999999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                 .+||+|||++.....   ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+..
T Consensus       138 -----------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~  206 (323)
T cd05584         138 -----------HVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRK  206 (323)
T ss_pred             -----------CEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHH
Confidence                       466677776543211   122357999999999999888999999999999999999999999887665


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+......                                                  .....+.++.+||.+||+
T Consensus       207 ~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~li~~~l~  236 (323)
T cd05584         207 KTIDKILKGKLN--------------------------------------------------LPPYLTPEARDLLKKLLK  236 (323)
T ss_pred             HHHHHHHcCCCC--------------------------------------------------CCCCCCHHHHHHHHHHcc
Confidence            544443321111                                                  112346789999999999


Q ss_pred             cCCCCCC-----CHHHHhcCCCCCCC
Q 013941          405 YDPAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~-----ta~ell~hp~f~~~  425 (433)
                      .||++|+     +++++++||||...
T Consensus       237 ~~p~~R~~~~~~~~~~l~~h~~~~~~  262 (323)
T cd05584         237 RNPSSRLGAGPGDAAEVQSHPFFRHV  262 (323)
T ss_pred             cCHhHcCCCCCCCHHHHhcCCCcCCC
Confidence            9999999     89999999999763

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=1.3e-45  Score=347.76  Aligned_cols=283  Identities=29%  Similarity=0.481  Sum_probs=219.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.++||+|+||.||+|.+..+++.||+|.++...  .......+|+.+++.++|+||     +++++++...+..+
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI-----~~~~~~~~~~~~~~   80 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANI-----VTLHDIIHTEKSLT   80 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCc-----ceEEEEEecCCeEE
Confidence            46999999999999999999999999999999986432  233456789999999999887     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||||+.++|.+++.... ..+++..++.++.||+.||.|||++||+|+||||+|||++.++                  
T Consensus        81 lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~------------------  141 (301)
T cd07873          81 LVFEYLDKDLKQYLDDCG-NSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERG------------------  141 (301)
T ss_pred             EEEeccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCC------------------
Confidence            999999889999887653 3689999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                               .++|+|||++......   .....++..|+|||++.+. .++.++|||||||++|+|++|++||.+.+..+
T Consensus       142 ---------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~  212 (301)
T cd07873         142 ---------ELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEE  212 (301)
T ss_pred             ---------cEEECcCcchhccCCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                     4566666665433221   1223578899999998764 47899999999999999999999999888877


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+.++.++...+........ +    ....++..               ...........++..+.+||.+||+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~---------------~~~~~~~~~~~~~~~~~~li~~ml~~  272 (301)
T cd07873         213 QLHFIFRILGTPTEETWPGILSNEE-F----KSYNYPKY---------------RADCLHNHAPRLDSDGAELLSKLLQF  272 (301)
T ss_pred             HHHHHHHHcCCCChhhchhhhcccc-c----cccccCcc---------------ccccHHhhcCCCCHHHHHHHHHHhcC
Confidence            7777777776655433221110000 0    00000000               00001112245677899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCcc
Q 013941          406 DPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||.+|||++|+++||||+.-.+
T Consensus       273 dp~~R~t~~eil~h~~f~~~~~  294 (301)
T cd07873         273 EGRKRISAEEAMKHPYFHCLGE  294 (301)
T ss_pred             CcccCcCHHHHhcCcccccccc
Confidence            9999999999999999987544

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-46  Score=351.55  Aligned_cols=244  Identities=27%  Similarity=0.371  Sum_probs=200.6

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcE-EEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC-e
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKEL-VAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN-H  167 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~-vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~-~  167 (433)
                      ...+.+.||+|+||+||+|.+.  |.. ||+|++....   ...+.+.+|+.+|.+++|+||     |++++++.... .
T Consensus        42 ~l~~~~~iG~G~~g~V~~~~~~--g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNI-----V~f~G~~~~~~~~  114 (362)
T KOG0192|consen   42 ELPIEEVLGSGSFGTVYKGKWR--GTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNI-----VQFYGACTSPPGS  114 (362)
T ss_pred             HhhhhhhcccCCceeEEEEEeC--CceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCe-----eeEEEEEcCCCCc
Confidence            3556677999999999999865  444 9999997533   225689999999999999988     99999999877 7


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC-cEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR-LIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~-ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ++|||||+ +|+|.+++.......++...+..++.||++||.|||+++ ||||||||+|||++.++              
T Consensus       115 ~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~--------------  180 (362)
T KOG0192|consen  115 LCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKG--------------  180 (362)
T ss_pred             eEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCC--------------
Confidence            99999999 999999998844458999999999999999999999999 99999999999996543              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhh--CCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVIL--GLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~--~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                  ..+||+|||+++....   ..+...||+.|||||++.  ...|+.++||||||+++|||+||..||.+
T Consensus       181 ------------~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~  248 (362)
T KOG0192|consen  181 ------------KTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFED  248 (362)
T ss_pred             ------------CEEEECCCccceeeccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCC
Confidence                        2578888888876553   334468999999999999  55899999999999999999999999998


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ....+....+... +..|                                               .....+++.+..||.
T Consensus       249 ~~~~~~~~~v~~~-~~Rp-----------------------------------------------~~p~~~~~~l~~l~~  280 (362)
T KOG0192|consen  249 LAPVQVASAVVVG-GLRP-----------------------------------------------PIPKECPPHLSSLME  280 (362)
T ss_pred             CCHHHHHHHHHhc-CCCC-----------------------------------------------CCCccCCHHHHHHHH
Confidence            8874444333221 1111                                               011235678999999


Q ss_pred             HhcccCCCCCCCHHHHh
Q 013941          401 GLLRYDPAERLKAREAL  417 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell  417 (433)
                      +||..||++||+..+++
T Consensus       281 ~CW~~dp~~RP~f~ei~  297 (362)
T KOG0192|consen  281 RCWLVDPSRRPSFLEIV  297 (362)
T ss_pred             HhCCCCCCcCCCHHHHH
Confidence            99999999999998876

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=3.1e-46  Score=356.17  Aligned_cols=247  Identities=23%  Similarity=0.402  Sum_probs=195.5

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|++..+++.||+|++++..    .....+..|..++..+ .|++|     +++++++.+.+.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~I-----v~~~~~~~~~~~~~lv~   75 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFL-----VGLHSCFQTESRLFFVI   75 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCC-----CceEEEEEcCCEEEEEE
Confidence            46899999999999999999999999997532    2334567788888888 46666     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++                    
T Consensus        76 e~~~~g~L~~~~~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~--------------------  133 (329)
T cd05588          76 EFVSGGDLMFHMQRQR--KLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEG--------------------  133 (329)
T ss_pred             eCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCC--------------------
Confidence            999 999999887654  799999999999999999999999999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCccc---cCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH---
Q 013941          252 KNLPKSSAIKLIDFGSTTFE---HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE---  325 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~---  325 (433)
                             .+||+|||++...   ........||..|+|||++.+..++.++|||||||++|+|++|+.||......+   
T Consensus       134 -------~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~  206 (329)
T cd05588         134 -------HIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPD  206 (329)
T ss_pred             -------CEEECcCccccccccCCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCccccccccccc
Confidence                   4666666665431   112234579999999999999999999999999999999999999996321100   


Q ss_pred             --HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          326 --HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       326 --~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                        ....+.+.                                        ..      .........++..+.++|.+||
T Consensus       207 ~~~~~~~~~~----------------------------------------~~------~~~~~~p~~~~~~~~~li~~~L  240 (329)
T cd05588         207 QNTEDYLFQV----------------------------------------IL------EKQIRIPRSLSVKASSVLKGFL  240 (329)
T ss_pred             ccchHHHHHH----------------------------------------HH------cCCCCCCCCCCHHHHHHHHHHh
Confidence              00000000                                        00      0001112345778999999999


Q ss_pred             ccCCCCCCC------HHHHhcCCCCCC
Q 013941          404 RYDPAERLK------AREALRHPFFTR  424 (433)
Q Consensus       404 ~~dP~~R~t------a~ell~hp~f~~  424 (433)
                      +.||++|+|      ++++++||||..
T Consensus       241 ~~dP~~R~~~~~~~~~~~i~~hp~~~~  267 (329)
T cd05588         241 NKDPKERLGCHPQTGFRDIKSHPFFRN  267 (329)
T ss_pred             ccCHHHcCCCCCCCCHHHHhcCCCCCC
Confidence            999999987      789999999975

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=7.4e-47  Score=331.09  Aligned_cols=289  Identities=29%  Similarity=0.527  Sum_probs=226.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCC----cEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKK----ELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..|+++++||+|.||.||+|...+++    +.+|||.++...   .......+|+.+++.++|+|+     +.+..+|-.
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nv-----i~Lv~Vfl~   98 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNV-----ISLVKVFLS   98 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcc-----hhHHHHHhc
Confidence            35999999999999999999765543    378999987542   344678899999999999988     888888876


Q ss_pred             -CCeEEEEEccCCCCHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          165 -RNHICIVFEKLGPSLYDFLRKNS---YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       165 -~~~~~lv~e~~~~~L~~~l~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                       +..+++++||...+|.++|..+.   .+.++...++.|+.||+.|+.|||++-|+||||||+|||+..+|         
T Consensus        99 ~d~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdg---------  169 (438)
T KOG0666|consen   99 HDKKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDG---------  169 (438)
T ss_pred             cCceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccC---------
Confidence             88999999999999999997432   24689999999999999999999999999999999999998876         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHh
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~  313 (433)
                                    +..+.+||+|||+++......      ..++-|.+|+|||++.|. .|+.+.||||+|||+.||+|
T Consensus       170 --------------perG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLt  235 (438)
T KOG0666|consen  170 --------------PERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLT  235 (438)
T ss_pred             --------------CccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHc
Confidence                          467889999999998766543      235779999999999987 59999999999999999999


Q ss_pred             CCCCCCCCC---------hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhh---HHHHH----Hh
Q 013941          314 GEALFQTHE---------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS---MRAVW----KL  377 (433)
Q Consensus       314 g~~pf~~~~---------~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~  377 (433)
                      -.+.|.+..         ..+++..|..++|.+...                   .||+...-++.   +..+.    ..
T Consensus       236 l~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~-------------------~Wp~lkk~Pe~q~~ls~f~~~~~~n  296 (438)
T KOG0666|consen  236 LEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDK-------------------DWPDLKKMPEYQTLLSDFRRHYYDN  296 (438)
T ss_pred             cCccccchhhhcccCCCchHHHHHHHHHHcCCCccc-------------------cchhhhhCcchHHHHHHhHHhhcCc
Confidence            999997643         245777888888876543                   34433322221   11111    01


Q ss_pred             cCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       378 ~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      ..+.+.. .....-++...+|+.+||..||.+|+|++|+|+|+||++....
T Consensus       297 ~sL~~~~-~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~lp  346 (438)
T KOG0666|consen  297 VSLHKYY-HKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDPLP  346 (438)
T ss_pred             chHHHHH-HHhcCCCchHHHHHHHHhccCchhhccHHHHhcccccccCCCC
Confidence            1111111 1122234568899999999999999999999999999987543

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-46  Score=330.34  Aligned_cols=277  Identities=26%  Similarity=0.447  Sum_probs=218.5

Q ss_pred             CeEE-eccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRI-LSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      -|++ .+.||+|+|+.|--|....++..||||++.+.. ..+..+.+|++++.+.+    +|+||++++++|+++..+||
T Consensus        78 ~YkLt~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cq----gh~nilqLiefFEdd~~FYL  153 (463)
T KOG0607|consen   78 MYKLTSELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQ----GHKNILQLIEFFEDDTRFYL  153 (463)
T ss_pred             HHHhHHHHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhc----CCccHHHHHHHhcccceEEE
Confidence            3555 357899999999999999999999999998654 45677889999998776    44666999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      |||-| ||+|...|+++.  .|++.++.++.++|+.||.|||.+||.||||||+|||..+.+.                 
T Consensus       154 VfEKm~GGplLshI~~~~--~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~-----------------  214 (463)
T KOG0607|consen  154 VFEKMRGGPLLSHIQKRK--HFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNK-----------------  214 (463)
T ss_pred             EEecccCchHHHHHHHhh--hccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCC-----------------
Confidence            99999 999999998875  7999999999999999999999999999999999999876543                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccC----------CCcccccCCcccchhhhh---C--CCCCccchHHHHHHHHHHHHhC
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQ----------DHSYVVSTRHYRAPEVIL---G--LGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~----------~~~~~~gt~~y~aPE~~~---~--~~~~~~~DiwSlG~il~el~~g  314 (433)
                             -..+|||||.+..-...          ...+.+|+..|||||+..   +  .-|+.++|.||||||||-|+.|
T Consensus       215 -------vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsG  287 (463)
T KOG0607|consen  215 -------VSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSG  287 (463)
T ss_pred             -------cCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhC
Confidence                   33578888876543211          112358999999999874   2  2489999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCc--hhhhhhccCCch
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL--PNLIMQHVDHSA  392 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  392 (433)
                      .+||.+.-.                                 ....|..+...+.=...+++..+.  -.+....+..+|
T Consensus       288 YpPFvG~Cg---------------------------------~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS  334 (463)
T KOG0607|consen  288 YPPFVGHCG---------------------------------ADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHIS  334 (463)
T ss_pred             CCCccCccC---------------------------------CcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhh
Confidence            999987532                                 223444444443333333333221  122233456778


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCccccCCC
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP  432 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~~~~  432 (433)
                      .+.++||..+|..|+.+|.+|.++++|||++.....+.+|
T Consensus       335 ~eakdlisnLlvrda~~rlsa~~vlnhPw~~~~~~ekalp  374 (463)
T KOG0607|consen  335 SEAKDLISNLLVRDAKQRLSAAQVLNHPWVQRCAPEKALP  374 (463)
T ss_pred             HHHHHHHHHHHhccHHhhhhhhhccCCccccccchhccCC
Confidence            9999999999999999999999999999999876544443

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.1e-45  Score=344.66  Aligned_cols=248  Identities=23%  Similarity=0.370  Sum_probs=197.5

Q ss_pred             ccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941          100 MGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus       100 lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ||+|+||+||+|.+..+++.||+|++....    ...+.+..|+.+++.++|+++     +++.+++...+.+|+||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i-----~~~~~~~~~~~~~~lv~e~~   75 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFI-----VSLAYAFQTKTDLCLVMTIM   75 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcE-----eeeeEEEcCCCeEEEEEeCC
Confidence            799999999999999999999999986432    122456679999999988777     99999999999999999999


Q ss_pred             -CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCccc
Q 013941          176 -GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK  252 (433)
Q Consensus       176 -~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~  252 (433)
                       +++|.+++...  ....+++..+..++.||+.||+|||++||+||||||+||+++.++                     
T Consensus        76 ~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~---------------------  134 (280)
T cd05608          76 NGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDG---------------------  134 (280)
T ss_pred             CCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC---------------------
Confidence             99999887532  224689999999999999999999999999999999999997655                     


Q ss_pred             CCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 013941          253 NLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM  329 (433)
Q Consensus       253 ~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~  329 (433)
                            .++|+|||++......   .....||+.|+|||++.+..++.++|||||||++|+|++|+.||...........
T Consensus       135 ------~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~  208 (280)
T cd05608         135 ------NVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKE  208 (280)
T ss_pred             ------CEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHH
Confidence                  4677777766543221   1234789999999999999999999999999999999999999976543221111


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAE  409 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  409 (433)
                      +.......                                              .......++..+.+|+.+||+.||++
T Consensus       209 ~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~li~~~l~~~P~~  242 (280)
T cd05608         209 LKQRILND----------------------------------------------SVTYPDKFSPASKSFCEALLAKDPEK  242 (280)
T ss_pred             HHHhhccc----------------------------------------------CCCCcccCCHHHHHHHHHHhcCCHHH
Confidence            11110000                                              00112345778999999999999999


Q ss_pred             CC-----CHHHHhcCCCCCCC
Q 013941          410 RL-----KAREALRHPFFTRD  425 (433)
Q Consensus       410 R~-----ta~ell~hp~f~~~  425 (433)
                      |+     |++++++||||++-
T Consensus       243 R~~~~~~~~~~~l~h~~~~~~  263 (280)
T cd05608         243 RLGFRDGNCDGLRTHPLFRDL  263 (280)
T ss_pred             hcCCCCCCHHHHhcChhhhcC
Confidence            99     89999999999873

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=4.8e-46  Score=354.14  Aligned_cols=243  Identities=27%  Similarity=0.417  Sum_probs=195.9

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHH-HHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEID-VLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~-~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||+||+|++..+++.||+|++.....    ....+..|.. +++.++|+++     +++++.+...+.+|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~i-----v~~~~~~~~~~~~~lv~   75 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFL-----VGLHYSFQTADKLYFVL   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCC-----CCeeEEEEeCCEEEEEE
Confidence            469999999999999999999999999875321    1223344444 4466777766     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                    
T Consensus        76 e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~--------------------  133 (323)
T cd05575          76 DYVNGGELFFHLQRER--SFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQG--------------------  133 (323)
T ss_pred             cCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCC--------------------
Confidence            999 999999997654  799999999999999999999999999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .+||+|||++....   .......||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+...
T Consensus       134 -------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~  206 (323)
T cd05575         134 -------HVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYD  206 (323)
T ss_pred             -------cEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHHHHHH
Confidence                   46677777665321   11233579999999999999899999999999999999999999998776555444


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.....                                                  ......+..+.++|.+||+.||+
T Consensus       207 ~i~~~~~--------------------------------------------------~~~~~~~~~~~~li~~~l~~~p~  236 (323)
T cd05575         207 NILNKPL--------------------------------------------------RLKPNISVSARHLLEGLLQKDRT  236 (323)
T ss_pred             HHHcCCC--------------------------------------------------CCCCCCCHHHHHHHHHHhhcCHH
Confidence            3322110                                                  01123467899999999999999


Q ss_pred             CCCCH----HHHhcCCCCCC
Q 013941          409 ERLKA----REALRHPFFTR  424 (433)
Q Consensus       409 ~R~ta----~ell~hp~f~~  424 (433)
                      +|+++    .++++||||..
T Consensus       237 ~R~~~~~~~~~il~~~~~~~  256 (323)
T cd05575         237 KRLGAKDDFLEIKNHVFFSS  256 (323)
T ss_pred             hCCCCCCCHHHHHcCCCcCC
Confidence            99987    69999999976

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=6.8e-46  Score=353.76  Aligned_cols=247  Identities=23%  Similarity=0.391  Sum_probs=194.4

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|++..+++.||+|++++..    .....+..|+.++.++ .|+++     +++++++...+.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~i-----v~~~~~~~~~~~~~lv~   75 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFL-----VGLHSCFQTESRLFFVI   75 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcC-----CceeeEEEeCCEEEEEE
Confidence            46999999999999999999999999997532    2334566788887766 56666     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                    
T Consensus        76 E~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~--------------------  133 (329)
T cd05618          76 EYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEG--------------------  133 (329)
T ss_pred             eCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCC--------------------
Confidence            999 999998887654  799999999999999999999999999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH----
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL----  324 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~----  324 (433)
                             .+||+|||++....   .......||..|+|||++.+..++.++|||||||++|+|++|..||......    
T Consensus       134 -------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~  206 (329)
T cd05618         134 -------HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPD  206 (329)
T ss_pred             -------CEEEeeCCccccccCCCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcc
Confidence                   46777777665321   1223357999999999999999999999999999999999999999531110    


Q ss_pred             -HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          325 -EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       325 -~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                       .....+.+.                                        ..      ......+...+..+.+||.+||
T Consensus       207 ~~~~~~~~~~----------------------------------------i~------~~~~~~p~~~~~~~~~ll~~~L  240 (329)
T cd05618         207 QNTEDYLFQV----------------------------------------IL------EKQIRIPRSLSVKAASVLKSFL  240 (329)
T ss_pred             cccHHHHHHH----------------------------------------Hh------cCCCCCCCCCCHHHHHHHHHHh
Confidence             000000000                                        00      0001122345678999999999


Q ss_pred             ccCCCCCCC------HHHHhcCCCCCC
Q 013941          404 RYDPAERLK------AREALRHPFFTR  424 (433)
Q Consensus       404 ~~dP~~R~t------a~ell~hp~f~~  424 (433)
                      +.||++|+|      +.++++||||++
T Consensus       241 ~~dP~~R~~~~~~~~~~~i~~hp~f~~  267 (329)
T cd05618         241 NKDPKERLGCHPQTGFADIQGHPFFRN  267 (329)
T ss_pred             cCCHHHcCCCCCCCCHHHHhcCCCCCC
Confidence            999999998      589999999976

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-46  Score=303.97  Aligned_cols=279  Identities=32%  Similarity=0.519  Sum_probs=226.1

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|.-.++||+|.||+||+|++..+++.||+|.++.++   .......+|+-+|+.+.|.||     |++++....++.+-
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhkni-----vrl~dvlhsdkklt   77 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI-----VRLHDVLHSDKKLT   77 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcce-----eehhhhhccCceeE
Confidence            4677899999999999999999999999999997533   345678999999999999988     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +|+|||..+|..+..... +.++.+.++.++.|+++||.|+|++++.|||+||.|+||+.+|                  
T Consensus        78 lvfe~cdqdlkkyfdsln-g~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ng------------------  138 (292)
T KOG0662|consen   78 LVFEFCDQDLKKYFDSLN-GDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNG------------------  138 (292)
T ss_pred             EeHHHhhHHHHHHHHhcC-CcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCC------------------
Confidence            999999999999988654 4799999999999999999999999999999999999997766                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCC-CCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                               .+||+|||+++..+.+-   +..+-|.+|++|.++.+.. |+...|+||.|||+.|+.. |++.|.+.+..
T Consensus       139 ---------elkladfglarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvd  209 (292)
T KOG0662|consen  139 ---------ELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD  209 (292)
T ss_pred             ---------cEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHH
Confidence                     56777777776554433   2236799999999999875 8999999999999999986 89999999999


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +++..|.+.+|.+.+.-                   ||.....++....  ........-.+..+..+..-+||++++|.
T Consensus       210 dqlkrif~~lg~p~ed~-------------------wps~t~lpdyk~y--p~ypattswsqivp~lns~grdllqkll~  268 (292)
T KOG0662|consen  210 DQLKRIFRLLGTPTEDQ-------------------WPSMTKLPDYKPY--PIYPATTSWSQIVPKLNSTGRDLLQKLLK  268 (292)
T ss_pred             HHHHHHHHHhCCCcccc-------------------CCccccCCCCccc--CCccccchHHHHhhhhcchhHHHHHHHhc
Confidence            99999999999876533                   3332222111000  00000000112233445577899999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      -+|.+|++|+++++||||.+-
T Consensus       269 cnp~qrisaeaalqhpyf~d~  289 (292)
T KOG0662|consen  269 CNPAQRISAEAALQHPYFSDF  289 (292)
T ss_pred             cCcccccCHHHHhcCcccccc
Confidence            999999999999999999873

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=1e-45  Score=357.78  Aligned_cols=254  Identities=24%  Similarity=0.416  Sum_probs=205.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|++.+.||+|+||.||+|++..+++.||+|++.+..    .....+.+|+.+++.++|+++     +++++.+.+++
T Consensus        42 ~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~i-----v~~~~~~~~~~  116 (371)
T cd05622          42 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWV-----VQLFYAFQDDR  116 (371)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEEcCC
Confidence            468999999999999999999999999999999986422    223446678999999988887     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ +++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++              
T Consensus       117 ~~~lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~--------------  179 (371)
T cd05622         117 YLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG--------------  179 (371)
T ss_pred             EEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCC--------------
Confidence            999999999 99999998764   489999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCC----CCccchHHHHHHHHHHHHhCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~----~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                   .+||+|||++......    ....+||+.|+|||++.+..    ++.++|||||||++|||++|..|
T Consensus       180 -------------~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~P  246 (371)
T cd05622         180 -------------HLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTP  246 (371)
T ss_pred             -------------CEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCC
Confidence                         4677777776543321    12357999999999997643    78999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+.......+......+                      .++                        ....++..+++
T Consensus       247 f~~~~~~~~~~~i~~~~~~~----------------------~~~------------------------~~~~~s~~~~~  280 (371)
T cd05622         247 FYADSLVGTYSKIMNHKNSL----------------------TFP------------------------DDNDISKEAKN  280 (371)
T ss_pred             CCCCCHHHHHHHHHcCCCcc----------------------cCC------------------------CcCCCCHHHHH
Confidence            98877655554443321110                      011                        11245778999


Q ss_pred             HHHHhcccCCCC--CCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAE--RLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~--R~ta~ell~hp~f~~~  425 (433)
                      ||.+||..++.+  |++++|+++|+||++.
T Consensus       281 li~~~L~~~~~r~~r~~~~ei~~h~~~~~~  310 (371)
T cd05622         281 LICAFLTDREVRLGRNGVEEIKRHLFFKND  310 (371)
T ss_pred             HHHHHcCChhhhcCCCCHHHHhcCcccCCC
Confidence            999999844433  7899999999999874

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4e-45  Score=356.61  Aligned_cols=280  Identities=25%  Similarity=0.412  Sum_probs=210.5

Q ss_pred             CccCCCeEEeccccccccEEEEEEEec--CCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDN--EKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ..+..+|++++.||+|+||.||+|...  .+++.||+|.+...    ....+|+.++++++|+++     +++++++...
T Consensus        88 ~~~~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~----~~~~~E~~il~~l~h~~i-----v~~~~~~~~~  158 (392)
T PHA03207         88 SVVRMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG----KTPGREIDILKTISHRAI-----INLIHAYRWK  158 (392)
T ss_pred             hhccCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc----ccHHHHHHHHHhcCCCCc-----cceeeeEeeC
Confidence            345568999999999999999999754  45678999987643    234679999999999887     9999999999


Q ss_pred             CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          166 NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       166 ~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      +..|+|||+++++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++              
T Consensus       159 ~~~~lv~e~~~~~l~~~l~~~~--~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~--------------  222 (392)
T PHA03207        159 STVCMVMPKYKCDLFTYVDRSG--PLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPE--------------  222 (392)
T ss_pred             CEEEEEehhcCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCC--------------
Confidence            9999999999889999985543  799999999999999999999999999999999999997665              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                   .++|+|||++......     .....||..|+|||++.+..++.++|||||||++|||++|..||.+
T Consensus       223 -------------~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~  289 (392)
T PHA03207        223 -------------NAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFG  289 (392)
T ss_pred             -------------CEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence                         4566666665433221     1235799999999999998999999999999999999999999976


Q ss_pred             CCh---HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcC----chhhhhhccCCchH
Q 013941          321 HEN---LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR----LPNLIMQHVDHSAG  393 (433)
Q Consensus       321 ~~~---~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  393 (433)
                      ...   ...+..+.+.++..|..+...........+                  .......+    .+...  .....+.
T Consensus       290 ~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~  349 (392)
T PHA03207        290 KQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHF------------------KQYAIVLRPPYTIPPVI--RKYGMHM  349 (392)
T ss_pred             CCCCCcHHHHHHHHHHhccCccccCCccchhHHHHH------------------HhhcccccCCccccchh--hccCcch
Confidence            543   345555555555444322111100000000                  00000000    00000  0113456


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ++.+||.+||..||++|||+.|+|+||||.+.
T Consensus       350 ~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~~  381 (392)
T PHA03207        350 DVEYLIAKMLTFDQEFRPSAQDILSLPLFTKE  381 (392)
T ss_pred             hHHHHHHHHhccChhhCCCHHHHhhCchhhcc
Confidence            88999999999999999999999999999875

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-47  Score=347.04  Aligned_cols=257  Identities=26%  Similarity=0.422  Sum_probs=217.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .+.|+..+.||+||||.||-++-+.||+.||+|.+.+.    .......++|..||.+++.+.|     |.+--.|++.+
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~Fi-----VslaYAfeTkd  258 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFI-----VSLAYAFETKD  258 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcE-----EEEeeeecCCC
Confidence            35689999999999999999999999999999988642    2344567889999999988866     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||..| ||+|.-+|...+...|++..++.++.+|+.||++||+.+||+||+||+|||+++.|++.|          
T Consensus       259 ~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRI----------  328 (591)
T KOG0986|consen  259 ALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRI----------  328 (591)
T ss_pred             ceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEe----------
Confidence            999999999 999999998888788999999999999999999999999999999999999988776555          


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                       +|+|+|.....  .....+||.+|||||++.+..|+..+|+|||||+||||+.|+.||.....
T Consensus       329 -----------------SDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~Ke  391 (591)
T KOG0986|consen  329 -----------------SDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKE  391 (591)
T ss_pred             -----------------eccceEEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhh
Confidence                             55555543322  22335999999999999999999999999999999999999999987766


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ....+.+.+..-..+                                              .+.++..|+++++|.+.+|
T Consensus       392 Kvk~eEvdrr~~~~~----------------------------------------------~ey~~kFS~eakslc~~LL  425 (591)
T KOG0986|consen  392 KVKREEVDRRTLEDP----------------------------------------------EEYSDKFSEEAKSLCEGLL  425 (591)
T ss_pred             hhhHHHHHHHHhcch----------------------------------------------hhcccccCHHHHHHHHHHH
Confidence            655555554432222                                              2234566889999999999


Q ss_pred             ccCCCCCC-----CHHHHhcCCCCCCC
Q 013941          404 RYDPAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~-----ta~ell~hp~f~~~  425 (433)
                      ++||++|+     +++++.+||||++-
T Consensus       426 ~Kdp~~RLGcrg~ga~evk~HpfFk~l  452 (591)
T KOG0986|consen  426 TKDPEKRLGCRGEGAQEVKEHPFFKDL  452 (591)
T ss_pred             ccCHHHhccCCCcCcchhhhCcccccC
Confidence            99999998     58899999999973

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=1.6e-45  Score=344.42  Aligned_cols=253  Identities=26%  Similarity=0.425  Sum_probs=204.0

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      |++.+.||+|+||.||+|.+..+++.||+|.+....    .....+.+|+.+++.++|+++     +.+++.+.+.+..|
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i-----~~~~~~~~~~~~~~   76 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFV-----VSLAYAYETKDALC   76 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCe-----eeeeEEEecCCEEE
Confidence            788899999999999999999999999999986432    223446679999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++.......+++..+..++.|++.||.|||++||+||||||+||+++.++                 
T Consensus        77 lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~-----------------  139 (285)
T cd05630          77 LVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHG-----------------  139 (285)
T ss_pred             EEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCC-----------------
Confidence            999999 99999998765545699999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                .++|+|||++.......  ....||..|+|||++.+..++.++|||||||++|+|++|..||........
T Consensus       140 ----------~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~  209 (285)
T cd05630         140 ----------HIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIK  209 (285)
T ss_pred             ----------CEEEeeccceeecCCCccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccch
Confidence                      46777777665433221  234789999999999998999999999999999999999999976443211


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...........                                              ........+.++.+||.+||+.|
T Consensus       210 ~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~li~~~l~~~  243 (285)
T cd05630         210 REEVERLVKEV----------------------------------------------QEEYSEKFSPDARSLCKMLLCKD  243 (285)
T ss_pred             HHHHHhhhhhh----------------------------------------------hhhcCccCCHHHHHHHHHHhhcC
Confidence            11111110000                                              00112345678999999999999


Q ss_pred             CCCCCC-----HHHHhcCCCCCC
Q 013941          407 PAERLK-----AREALRHPFFTR  424 (433)
Q Consensus       407 P~~R~t-----a~ell~hp~f~~  424 (433)
                      |++|+|     ++|+++||||++
T Consensus       244 p~~R~s~~~~~~~~~~~h~~~~~  266 (285)
T cd05630         244 PKERLGCQGGGAREVKEHPLFKQ  266 (285)
T ss_pred             HHHccCCCCCchHHHHcChhhhc
Confidence            999999     999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-45  Score=350.70  Aligned_cols=255  Identities=26%  Similarity=0.417  Sum_probs=202.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||.||++++..+++.||+|++.+..    ...+.+.+|+.++..+.|+++     +.+++++.++++
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~~~   75 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWI-----TNLHYAFQDENN   75 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCC-----CceEEEEecCCe
Confidence            36999999999999999999999999999999987532    223456778999988888877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++.+.. ..+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~---------------  139 (331)
T cd05597          76 LYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNG---------------  139 (331)
T ss_pred             EEEEEecCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCC---------------
Confidence            99999999 999999997643 3689999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhC-----CCCCccchHHHHHHHHHHHHhCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILG-----LGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                  .++|+|||++.......    ....||+.|+|||++.+     ..++.++|||||||++|+|++|+.|
T Consensus       140 ------------~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~P  207 (331)
T cd05597         140 ------------HIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETP  207 (331)
T ss_pred             ------------CEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCC
Confidence                        46777777765432211    22469999999999973     3578899999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+..+....+......                      ...+                       .....++.++++
T Consensus       208 f~~~~~~~~~~~i~~~~~~----------------------~~~~-----------------------~~~~~~~~~~~~  242 (331)
T cd05597         208 FYAESLVETYGKIMNHKEH----------------------FQFP-----------------------PDVTDVSEEAKD  242 (331)
T ss_pred             CCCCCHHHHHHHHHcCCCc----------------------ccCC-----------------------CccCCCCHHHHH
Confidence            9876655544433221100                      0000                       011235778999


Q ss_pred             HHHHhcccCCCC--CCCHHHHhcCCCCCC
Q 013941          398 LLQGLLRYDPAE--RLKAREALRHPFFTR  424 (433)
Q Consensus       398 li~~~L~~dP~~--R~ta~ell~hp~f~~  424 (433)
                      ||.+||..++++  |++++++++||||.+
T Consensus       243 li~~ll~~~~~r~~r~~~~~~l~hp~~~~  271 (331)
T cd05597         243 LIRRLICSPETRLGRNGLQDFKDHPFFEG  271 (331)
T ss_pred             HHHHHccCcccccCCCCHHHHhcCCCCCC
Confidence            999999765544  789999999999976

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3.1e-46  Score=354.74  Aligned_cols=244  Identities=29%  Similarity=0.462  Sum_probs=201.9

Q ss_pred             ccccccccEEEEEEEe---cCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           98 SKMGEGTFGQVVECFD---NEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~---~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      +.||+|+||.||++++   ..+|+.||+|++....   .......+|++++++++|+||     +++++++.+++.+|+|
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~~~~lv   76 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFI-----VKLHYAFQTEGKLYLI   76 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCc-----ccEEEEEEcCCEEEEE
Confidence            6799999999999986   3578999999997533   223456679999999998887     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.+..  .+++..++.++.||+.||+|||++||+||||||+|||++.++                   
T Consensus        77 ~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~-------------------  135 (318)
T cd05582          77 LDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEG-------------------  135 (318)
T ss_pred             EcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCC-------------------
Confidence            9999 899999997654  699999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL  327 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~  327 (433)
                              .++|+|||++......   .....||..|+|||++.+..++.++|||||||++|+|++|+.||...+.....
T Consensus       136 --------~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~  207 (318)
T cd05582         136 --------HIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETM  207 (318)
T ss_pred             --------cEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHHHHH
Confidence                    4677777776543322   22357899999999999888999999999999999999999999887665555


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP  407 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  407 (433)
                      ..+.+....+                                                  ....+..+.+||.+||+.||
T Consensus       208 ~~i~~~~~~~--------------------------------------------------p~~~~~~~~~li~~~l~~~P  237 (318)
T cd05582         208 TMILKAKLGM--------------------------------------------------PQFLSPEAQSLLRALFKRNP  237 (318)
T ss_pred             HHHHcCCCCC--------------------------------------------------CCCCCHHHHHHHHHHhhcCH
Confidence            4443221111                                                  12346789999999999999


Q ss_pred             CCCCC-----HHHHhcCCCCCCC
Q 013941          408 AERLK-----AREALRHPFFTRD  425 (433)
Q Consensus       408 ~~R~t-----a~ell~hp~f~~~  425 (433)
                      ++|||     ++++++||||...
T Consensus       238 ~~R~~a~~~~~~~~~~~~~~~~~  260 (318)
T cd05582         238 ANRLGAGPDGVEEIKRHPFFSTI  260 (318)
T ss_pred             hHcCCCCCCCHHHHhCCCCcCCC
Confidence            99999     7889999999763

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-47  Score=334.51  Aligned_cols=251  Identities=27%  Similarity=0.457  Sum_probs=213.8

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      -+.|..++.||+|.||.|.+|+.+.+++.||+|++++.-    ........|-++|+..+||.+     ..+.-.|+..+
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFL-----t~LKYsFQt~d  241 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFL-----TSLKYSFQTQD  241 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHH-----HHhhhhhccCc
Confidence            367999999999999999999999999999999998643    223345568889999988877     88888899999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ++|+||||. ||.|.-++.+..  .+++..++.+...|+.||.|||+++||+||||.+|+|++.+|++||+         
T Consensus       242 rlCFVMeyanGGeLf~HLsrer--~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKit---------  310 (516)
T KOG0690|consen  242 RLCFVMEYANGGELFFHLSRER--VFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKIT---------  310 (516)
T ss_pred             eEEEEEEEccCceEeeehhhhh--cccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEee---------
Confidence            999999999 999998888754  89999999999999999999999999999999999999887765554         


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCcc---ccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTF---EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                        |||+++.   ......++|||+.|+|||++....|+.++|+|.+||++|||++|+.||...+
T Consensus       311 ------------------DFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~d  372 (516)
T KOG0690|consen  311 ------------------DFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKD  372 (516)
T ss_pred             ------------------ecccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccc
Confidence                              5554432   1234456899999999999999999999999999999999999999999888


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ....+..|.-.--.+                                                  +..++++++.|+..+
T Consensus       373 h~kLFeLIl~ed~kF--------------------------------------------------Pr~ls~eAktLLsGL  402 (516)
T KOG0690|consen  373 HEKLFELILMEDLKF--------------------------------------------------PRTLSPEAKTLLSGL  402 (516)
T ss_pred             hhHHHHHHHhhhccC--------------------------------------------------CccCCHHHHHHHHHH
Confidence            777776665432222                                                  235578999999999


Q ss_pred             cccCCCCCC-----CHHHHhcCCCCCCC
Q 013941          403 LRYDPAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~-----ta~ell~hp~f~~~  425 (433)
                      |.+||.+|+     .|.||.+|+||...
T Consensus       403 L~kdP~kRLGgGpdDakEi~~h~FF~~v  430 (516)
T KOG0690|consen  403 LKKDPKKRLGGGPDDAKEIMRHRFFASV  430 (516)
T ss_pred             hhcChHhhcCCCchhHHHHHhhhhhccC
Confidence            999999998     48999999999864

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.7e-45  Score=354.96  Aligned_cols=278  Identities=23%  Similarity=0.373  Sum_probs=203.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      .+|++++.||+|+||.||+|++..+++.||+|+....     ....|+.++++++|+|+     +++++++...+..++|
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~-----~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~lv  135 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG-----TTLIEAMLLQNVNHPSV-----IRMKDTLVSGAITCMV  135 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc-----ccHHHHHHHHhCCCCCC-----cChhheEEeCCeeEEE
Confidence            4799999999999999999999999999999985432     23568999999998887     9999999999999999


Q ss_pred             EccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          172 FEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       172 ~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||++.++|.+++.... ..+++..++.++.||+.||.|||++|||||||||+|||++.++                    
T Consensus       136 ~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~--------------------  194 (357)
T PHA03209        136 LPHYSSDLYTYLTKRS-RPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVD--------------------  194 (357)
T ss_pred             EEccCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC--------------------
Confidence            9999889999887643 4689999999999999999999999999999999999996654                    


Q ss_pred             cCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC-CCCCCCh-----
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA-LFQTHEN-----  323 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~-pf~~~~~-----  323 (433)
                             .++|+|||.+......  .....||..|+|||++.+..++.++|||||||++|||+++.. +|.....     
T Consensus       195 -------~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~  267 (357)
T PHA03209        195 -------QVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEY  267 (357)
T ss_pred             -------CEEEecCccccccccCcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcHHHH
Confidence                   4677777777543222  223578999999999999899999999999999999998544 4443221     


Q ss_pred             ----HHHHHHHHHHhcCCChhhHHhhhh-hhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          324 ----LEHLAMMERVLGPLPHHMVIRADR-RAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       324 ----~~~~~~i~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                          ...+..+...++..|..+...... ....++.......                 ..............+.++.+|
T Consensus       268 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l  330 (357)
T PHA03209        268 VKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLER-----------------QPYTRYPCFQRVNLPIDGEFL  330 (357)
T ss_pred             HHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCC-----------------CcccccHHHhccCCCchHHHH
Confidence                112223333333333222100000 0000000000000                 000000001112346678899


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      |.+||+.||++||||.|||+||||++
T Consensus       331 i~~mL~~dP~~Rpta~e~l~hp~f~~  356 (357)
T PHA03209        331 VHKMLTFDAAMRPSAEEILNYPMFAQ  356 (357)
T ss_pred             HHHHHcCCcccCcCHHHHhcCchhcc
Confidence            99999999999999999999999985

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=3e-45  Score=337.64  Aligned_cols=252  Identities=36%  Similarity=0.598  Sum_probs=205.3

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHH---HHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE---AAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~---~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      |++++.||+|+||+||++.+..+++.||+|++........   ...+|+.+++++.|+++     +++++++.+....++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i-----~~~~~~~~~~~~~~~   75 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNI-----VQILDVFQDDNYLYI   75 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTB-----CHEEEEEEESSEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccc-----ccccccccccccccc
Confidence            8899999999999999999999999999999986553332   23459999999988887     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      |||++ +++|.+++....  .+++..+..++.||+.||.+||++||+|+||||+||+++.++                  
T Consensus        76 v~~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~------------------  135 (260)
T PF00069_consen   76 VMEYCPGGSLQDYLQKNK--PLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENG------------------  135 (260)
T ss_dssp             EEEEETTEBHHHHHHHHS--SBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTS------------------
T ss_pred             cccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccc------------------
Confidence            99999 669999998443  699999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccc---cCCCcccccCCcccchhhhh-CCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFE---HQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~---~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                               .++|+|||.+...   ........+|..|+|||++. +..++.++||||||+++|+|++|..||......+
T Consensus       136 ---------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~  206 (260)
T PF00069_consen  136 ---------EVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDD  206 (260)
T ss_dssp             ---------EEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHH
T ss_pred             ---------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence                     4677777776532   22223357899999999998 7789999999999999999999999998875445


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+.......                                           ............+.++|.+||+.
T Consensus       207 ~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~l~~li~~~l~~  243 (260)
T PF00069_consen  207 QLEIIEKILKRPLP-------------------------------------------SSSQQSREKSEELRDLIKKMLSK  243 (260)
T ss_dssp             HHHHHHHHHHTHHH-------------------------------------------HHTTSHTTSHHHHHHHHHHHSSS
T ss_pred             hhhhhhhccccccc-------------------------------------------ccccccchhHHHHHHHHHHHccC
Confidence            44444433211100                                           00001112236899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      ||++|||+.++++||||
T Consensus       244 ~p~~R~~~~~l~~~~~~  260 (260)
T PF00069_consen  244 DPEQRPSAEELLKHPWF  260 (260)
T ss_dssp             SGGGSTTHHHHHTSGGG
T ss_pred             ChhHCcCHHHHhcCCCC
Confidence            99999999999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.5e-45  Score=366.44  Aligned_cols=294  Identities=24%  Similarity=0.329  Sum_probs=202.6

Q ss_pred             eecCCccCCCeEEeccccccccEEEEEEEecCCC-cEEEE------------------EEeccchhhHHHHHHHHHHHHH
Q 013941           84 FAIGENLTPRYRILSKMGEGTFGQVVECFDNEKK-ELVAI------------------KIVRSINKYREAAMIEIDVLQR  144 (433)
Q Consensus        84 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~-~~vav------------------K~~~~~~~~~~~~~~E~~~l~~  144 (433)
                      ...++.+.++|+++++||+|+||+||+|..+... ..+++                  |.+.........+.+|+.++++
T Consensus       140 ~~~~~~~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~  219 (501)
T PHA03210        140 LKHDDEFLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGR  219 (501)
T ss_pred             cccchhhhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHh
Confidence            3445566789999999999999999998754322 11222                  2222222344567789999999


Q ss_pred             HHhCCCCCcceeEecceeccCCeEEEEEccCCCCHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCC
Q 013941          145 LARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNS---YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK  221 (433)
Q Consensus       145 l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDik  221 (433)
                      ++|+||     +++++++.+.+..|+|+++++++|.+++....   ........++.++.||+.||+|||++||||||||
T Consensus       220 l~HpnI-----v~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLK  294 (501)
T PHA03210        220 LNHENI-----LKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIK  294 (501)
T ss_pred             CCCCCc-----CcEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            999888     99999999999999999999889988876432   1123467788999999999999999999999999


Q ss_pred             CCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCc
Q 013941          222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNY  297 (433)
Q Consensus       222 p~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~  297 (433)
                      |+|||++.++                           .+||+|||++.......    ....||..|+|||++.+..++.
T Consensus       295 P~NILl~~~~---------------------------~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  347 (501)
T PHA03210        295 LENIFLNCDG---------------------------KIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCE  347 (501)
T ss_pred             HHHEEECCCC---------------------------CEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCc
Confidence            9999997655                           46777777775443221    2357999999999999999999


Q ss_pred             cchHHHHHHHHHHHHhCCCC-CCCC--ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHH
Q 013941          298 PCDLWSVGCILVELCSGEAL-FQTH--ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV  374 (433)
Q Consensus       298 ~~DiwSlG~il~el~~g~~p-f~~~--~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (433)
                      ++|||||||++|||++|..+ |...  .....+..+...++..+..+..... ....++...   .+..   ....    
T Consensus       348 ~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~i~~~---~~~~---~~~~----  416 (501)
T PHA03210        348 ITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPC-KLFDYIDSA---EIDH---AGHS----  416 (501)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHH-HHHHHhhhh---hccc---Cccc----
Confidence            99999999999999998754 4322  2333344433333322211100000 000011000   0000   0000    


Q ss_pred             HHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                           .+...  .....+.++.++|.+||++||++|||+.|+|+||||.....
T Consensus       417 -----~~~~~--~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~~~~  462 (501)
T PHA03210        417 -----VPPLI--RNLGLPADFEYPLVKMLTFDWHLRPGAAELLALPLFSAEEE  462 (501)
T ss_pred             -----hhhHH--HhcCCChHHHHHHHHHhccCcccCcCHHHHhhChhhhcCCc
Confidence                 00000  01124567899999999999999999999999999987544

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=3.3e-45  Score=348.85  Aligned_cols=248  Identities=23%  Similarity=0.378  Sum_probs=195.7

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|++..+++.||+|++++..    ...+.+.+|+.++.++. |+++     +.+++++...+.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i-----~~~~~~~~~~~~~~lv~   75 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFL-----VGLHSCFQTTSRLFLVI   75 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCE-----eeEEEEEEeCCEEEEEE
Confidence            47999999999999999999999999997532    23345677888888885 5544     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                    
T Consensus        76 e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~--------------------  133 (327)
T cd05617          76 EYVNGGDLMFHMQRQR--KLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADG--------------------  133 (327)
T ss_pred             eCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCC--------------------
Confidence            999 999999887654  699999999999999999999999999999999999997665                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH---
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE---  325 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~---  325 (433)
                             .+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++|..||.......   
T Consensus       134 -------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~  206 (327)
T cd05617         134 -------HIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMN  206 (327)
T ss_pred             -------CEEEeccccceeccCCCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccc
Confidence                   46677777665321   12234579999999999999999999999999999999999999996422110   


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+....                                              .....+...+..+.++|.+||+.
T Consensus       207 ~~~~~~~~~~~----------------------------------------------~~~~~p~~~~~~~~~li~~~L~~  240 (327)
T cd05617         207 TEDYLFQVILE----------------------------------------------KPIRIPRFLSVKASHVLKGFLNK  240 (327)
T ss_pred             cHHHHHHHHHh----------------------------------------------CCCCCCCCCCHHHHHHHHHHhcc
Confidence            00000000000                                              00011234567899999999999


Q ss_pred             CCCCCCC------HHHHhcCCCCCCC
Q 013941          406 DPAERLK------AREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~t------a~ell~hp~f~~~  425 (433)
                      ||++|++      ++++++||||+..
T Consensus       241 dP~~R~~~~~~~~~~~i~~h~~f~~~  266 (327)
T cd05617         241 DPKERLGCQPQTGFSDIKSHTFFRSI  266 (327)
T ss_pred             CHHHcCCCCCCCCHHHHHcCCCCCCC
Confidence            9999998      5799999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=1.5e-45  Score=351.05  Aligned_cols=243  Identities=26%  Similarity=0.391  Sum_probs=195.4

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHH-HHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEID-VLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~-~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||+||+|++..+|+.||+|++.+..    .....+..|.. +++.+.|+++     +++++++...+.+|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~i-----v~~~~~~~~~~~~~lv~   75 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFL-----VGLHYSFQTTEKLYFVL   75 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCC-----ccEEEEEecCCEEEEEE
Confidence            46999999999999999999999999986532    22233444544 3556667766     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                    
T Consensus        76 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~--------------------  133 (325)
T cd05604          76 DFVNGGELFFHLQRER--SFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQG--------------------  133 (325)
T ss_pred             cCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCC--------------------
Confidence            999 999999887654  799999999999999999999999999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .+||+|||++....   .......||..|+|||++.+..++.++|||||||++|+|++|..||...+..+...
T Consensus       134 -------~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~~  206 (325)
T cd05604         134 -------HVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYD  206 (325)
T ss_pred             -------CEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHHHHHH
Confidence                   46677777665321   12233579999999999999999999999999999999999999998776555443


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.....                                                  ......+..+.++|.+||+.||.
T Consensus       207 ~~~~~~~--------------------------------------------------~~~~~~~~~~~~ll~~ll~~~p~  236 (325)
T cd05604         207 NILHKPL--------------------------------------------------VLRPGASLTAWSILEELLEKDRQ  236 (325)
T ss_pred             HHHcCCc--------------------------------------------------cCCCCCCHHHHHHHHHHhccCHH
Confidence            3322100                                                  01123466889999999999999


Q ss_pred             CCCCH----HHHhcCCCCCC
Q 013941          409 ERLKA----REALRHPFFTR  424 (433)
Q Consensus       409 ~R~ta----~ell~hp~f~~  424 (433)
                      +||++    .++++||||..
T Consensus       237 ~R~~~~~~~~~i~~h~~f~~  256 (325)
T cd05604         237 RRLGAKEDFLEIQEHPFFES  256 (325)
T ss_pred             hcCCCCCCHHHHhcCCCcCC
Confidence            99976    59999999986

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=1e-44  Score=338.79  Aligned_cols=276  Identities=30%  Similarity=0.481  Sum_probs=208.8

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++.+.||+|+||.||+|++..+|+.||+|.++...   .....+.+|+.++++++|+++     +++++++.+.+.++
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i-----~~~~~~~~~~~~~~   75 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI-----VRLYDVLHSDKKLT   75 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCe-----eeHHHHhccCCceE
Confidence            5899999999999999999999999999999986432   223456789999999988877     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +|+||++++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+||+++.++.                 
T Consensus        76 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~-----------------  137 (284)
T cd07839          76 LVFEYCDQDLKKYFDSCN-GDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGE-----------------  137 (284)
T ss_pred             EEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCc-----------------
Confidence            999999889998887543 36999999999999999999999999999999999999976664                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCC-CCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALF-QTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf-~~~~~~  324 (433)
                                ++|+|||++.......   ....++..|+|||++.+. .++.++|||||||++|+|++|..|| .+.+..
T Consensus       138 ----------~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~  207 (284)
T cd07839         138 ----------LKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD  207 (284)
T ss_pred             ----------EEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHH
Confidence                      5555555554332211   223578899999998775 4789999999999999999988875 555555


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      ..+..+.+..+..+...+.........       ..++...              ......+.....+.++.+||.+||+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------------~~~~~~~~~~~~~~~~~~li~~~l~  266 (284)
T cd07839         208 DQLKRIFRLLGTPTEESWPGVSKLPDY-------KPYPMYP--------------ATTSLVNVVPKLNSTGRDLLQNLLV  266 (284)
T ss_pred             HHHHHHHHHhCCCChHHhHHhhhcccc-------cccCCCC--------------CcchhhhhcccCCHHHHHHHHHHhc
Confidence            666666666555443322111100000       0000000              0000011223567899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCC
Q 013941          405 YDPAERLKAREALRHPFF  422 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f  422 (433)
                      .||.+|||++|+++||||
T Consensus       267 ~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         267 CNPVQRISAEEALQHPYF  284 (284)
T ss_pred             CChhhcCCHHHHhcCCCC
Confidence            999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8e-46  Score=348.72  Aligned_cols=242  Identities=25%  Similarity=0.374  Sum_probs=204.6

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      +.+++.||+|.||.||+|....+. .||+|.++......+.+.+|+++|++|+|++|     |++++++..++.+|||||
T Consensus       208 l~l~~~LG~G~FG~V~~g~~~~~~-~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~l-----V~l~gV~~~~~piyIVtE  281 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWLGKWNGST-KVAVKTIKEGSMSPEAFLREAQIMKKLRHEKL-----VKLYGVCTKQEPIYIVTE  281 (468)
T ss_pred             HHHHHHhcCCccceEEEEEEcCCC-cccceEEeccccChhHHHHHHHHHHhCcccCe-----EEEEEEEecCCceEEEEE
Confidence            566889999999999999976543 59999998766667888999999999999988     999999999889999999


Q ss_pred             cC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCccc
Q 013941          174 KL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK  252 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~  252 (433)
                      || .|+|.++|+......+...+...++.||++|++||+++++|||||-..||||+++..                    
T Consensus       282 ~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~--------------------  341 (468)
T KOG0197|consen  282 YMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLV--------------------  341 (468)
T ss_pred             ecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCce--------------------
Confidence            99 999999999866678999999999999999999999999999999999999977664                    


Q ss_pred             CCCCCCCeeeecCCCCccccCCCcc-cc---cCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHH
Q 013941          253 NLPKSSAIKLIDFGSTTFEHQDHSY-VV---STRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHL  327 (433)
Q Consensus       253 ~~~~~~~~kl~Dfg~a~~~~~~~~~-~~---gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~  327 (433)
                             +||+|||+|+...+..-. ..   -...|.|||.+....++.+||||||||+||||+| |+.||.+.+..+.+
T Consensus       342 -------vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~  414 (468)
T KOG0197|consen  342 -------VKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVL  414 (468)
T ss_pred             -------EEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCCHHHHH
Confidence                   555555555533222211 11   2356999999999999999999999999999999 99999999998888


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP  407 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  407 (433)
                      ..+.+..                       ++.                          .++.+++++.+++..||..+|
T Consensus       415 ~~le~Gy-----------------------Rlp--------------------------~P~~CP~~vY~lM~~CW~~~P  445 (468)
T KOG0197|consen  415 ELLERGY-----------------------RLP--------------------------RPEGCPDEVYELMKSCWHEDP  445 (468)
T ss_pred             HHHhccC-----------------------cCC--------------------------CCCCCCHHHHHHHHHHhhCCc
Confidence            7776532                       222                          234568899999999999999


Q ss_pred             CCCCCHHHHh
Q 013941          408 AERLKAREAL  417 (433)
Q Consensus       408 ~~R~ta~ell  417 (433)
                      ++|||.+.+.
T Consensus       446 ~~RPtF~~L~  455 (468)
T KOG0197|consen  446 EDRPTFETLR  455 (468)
T ss_pred             ccCCCHHHHH
Confidence            9999998664

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.8e-44  Score=337.18  Aligned_cols=277  Identities=31%  Similarity=0.520  Sum_probs=210.8

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++.+.||+|++|.||+|++..+++.||+|+++...   .....+.+|+.+++.+.|+++     +++++++..++..|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~   75 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNI-----VCLQDVLMQESRLY   75 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCE-----eeeEEEEeeCCeEE
Confidence            4899999999999999999999999999999986432   233567789999999988777     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNS-YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+.++|.+++.... ...+++..++.++.||+.||+|||++||+||||||+||+++.++.                
T Consensus        76 ~v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~----------------  139 (285)
T cd07861          76 LIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGV----------------  139 (285)
T ss_pred             EEEecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCc----------------
Confidence            999999779998887533 246899999999999999999999999999999999999977665                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                 ++|+|||++......   .....++..|+|||++.+. .++.++|||||||++|+|++|+.||.+....
T Consensus       140 -----------~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~  208 (285)
T cd07861         140 -----------IKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEI  208 (285)
T ss_pred             -----------EEECcccceeecCCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence                       455555554432211   1123568899999998764 4789999999999999999999999988777


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+.+..+......+..... ...+                   ....... ...........++.++.+||.+||+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~  267 (285)
T cd07861         209 DQLFRIFRILGTPTEDVWPGVTS-LPDY-------------------KNTFPKW-KKGSLRSAVKNLDEDGLDLLEKMLI  267 (285)
T ss_pred             HHHHHHHHHhCCCChhhhhcchh-hHHH-------------------Hhhcccc-CcchhHHhcCCCCHHHHHHHHHHhc
Confidence            76666666555443322211100 0000                   0000000 0001111233467899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCC
Q 013941          405 YDPAERLKAREALRHPFF  422 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f  422 (433)
                      .||++|||+.+|++||||
T Consensus       268 ~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         268 YDPAKRISAKKALNHPYF  285 (285)
T ss_pred             CChhhCCCHHHHhcCCCC
Confidence            999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=3.1e-45  Score=348.89  Aligned_cols=243  Identities=26%  Similarity=0.411  Sum_probs=195.5

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHH-HHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEID-VLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~-~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||+||+|++..+++.||+|++.+...    .......|.. +++.+.|++|     +++++++...+.+|+||
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~I-----v~~~~~~~~~~~~~lv~   75 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFL-----VGLHFSFQTADKLYFVL   75 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCC-----CceeEEEEcCCeEEEEE
Confidence            479999999999999999999999999875321    1223333433 4566667766     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                    
T Consensus        76 e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~--------------------  133 (325)
T cd05602          76 DYINGGELFYHLQRER--CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQG--------------------  133 (325)
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCC--------------------
Confidence            999 999999998654  689999999999999999999999999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .++|+|||++....   ......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+......
T Consensus       134 -------~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~  206 (325)
T cd05602         134 -------HIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYD  206 (325)
T ss_pred             -------CEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHHHHH
Confidence                   46677777665321   12233579999999999999999999999999999999999999998777655444


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.....                                                  .....++..+.++|.+||+.||.
T Consensus       207 ~i~~~~~--------------------------------------------------~~~~~~~~~~~~li~~~l~~~p~  236 (325)
T cd05602         207 NILNKPL--------------------------------------------------QLKPNITNSARHLLEGLLQKDRT  236 (325)
T ss_pred             HHHhCCc--------------------------------------------------CCCCCCCHHHHHHHHHHcccCHH
Confidence            4322110                                                  11134567899999999999999


Q ss_pred             CCCCHH----HHhcCCCCCC
Q 013941          409 ERLKAR----EALRHPFFTR  424 (433)
Q Consensus       409 ~R~ta~----ell~hp~f~~  424 (433)
                      +|+++.    ++++|+||..
T Consensus       237 ~R~~~~~~~~~i~~~~~~~~  256 (325)
T cd05602         237 KRLGAKDDFMEIKNHIFFSP  256 (325)
T ss_pred             HCCCCCCCHHHHhcCcccCC
Confidence            999876    8999999965

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-45  Score=352.19  Aligned_cols=246  Identities=27%  Similarity=0.438  Sum_probs=193.3

Q ss_pred             ccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941          100 MGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus       100 lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ||+|+||+||+|++..+++.||||++.+...    .......|..++..+...  .|++++.+++++.+.+.+|+||||+
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~--~~p~i~~~~~~~~~~~~~~lv~e~~   78 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLD--ESPFIVGLKFSFQTDSDLYLVTDYM   78 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccC--CCCcCcceEEEEecCCeEEEEEcCC
Confidence            7999999999999999999999999864321    122334566666655310  2344499999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                       +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                       
T Consensus        79 ~~g~L~~~l~~~~--~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~-----------------------  133 (330)
T cd05586          79 SGGELFWHLQKEG--RFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATG-----------------------  133 (330)
T ss_pred             CCChHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCC-----------------------
Confidence             999999987654  799999999999999999999999999999999999997655                       


Q ss_pred             CCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM  330 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i  330 (433)
                          .++|+|||++.....   .....+||..|+|||++.+. .++.++|||||||++|+|++|..||.+.+..+....+
T Consensus       134 ----~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~~~i  209 (330)
T cd05586         134 ----HIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNI  209 (330)
T ss_pred             ----CEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHHHHHHHH
Confidence                467777776653211   12345799999999999765 4899999999999999999999999876655444333


Q ss_pred             HHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCC
Q 013941          331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER  410 (433)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  410 (433)
                      ......+|                                                 ...++.++.+||.+||+.||++|
T Consensus       210 ~~~~~~~~-------------------------------------------------~~~~~~~~~~li~~~L~~~P~~R  240 (330)
T cd05586         210 AFGKVRFP-------------------------------------------------KNVLSDEGRQFVKGLLNRNPQHR  240 (330)
T ss_pred             HcCCCCCC-------------------------------------------------CccCCHHHHHHHHHHcCCCHHHC
Confidence            21111110                                                 01246688999999999999999


Q ss_pred             C----CHHHHhcCCCCCCC
Q 013941          411 L----KAREALRHPFFTRD  425 (433)
Q Consensus       411 ~----ta~ell~hp~f~~~  425 (433)
                      +    +++++++||||.+.
T Consensus       241 ~~~~~~~~~ll~h~~~~~~  259 (330)
T cd05586         241 LGAHRDAVELKEHPFFADI  259 (330)
T ss_pred             CCCCCCHHHHhcCccccCC
Confidence            8    79999999999863

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=1.1e-44  Score=338.73  Aligned_cols=255  Identities=24%  Similarity=0.374  Sum_probs=207.8

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .|+..+.||+|+||+||+|.+..+++.||+|++....    .....+.+|+.+++.++|+++     +.+.+.+..++..
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i-----~~~~~~~~~~~~~   75 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFV-----VNLAYAYETKDAL   75 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCc-----eeEEEEEecCCEE
Confidence            3788899999999999999999999999999986532    223446789999999998887     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++.......+++..+..++.|++.||.|||++||+||||||+||+++.++                
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~----------------  139 (285)
T cd05632          76 CLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYG----------------  139 (285)
T ss_pred             EEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCC----------------
Confidence            9999999 89999888765545799999999999999999999999999999999999996544                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                 .++|+|||++......  .....|+..|+|||++.+..++.++|||||||++|+|++|..||.......
T Consensus       140 -----------~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~  208 (285)
T cd05632         140 -----------HIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKV  208 (285)
T ss_pred             -----------CEEEecCCcceecCCCCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                       4677777766543221  123478999999999998889999999999999999999999998766544


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+........                                              .......+.++.+|+.+||+.
T Consensus       209 ~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~li~~~l~~  242 (285)
T cd05632         209 KREEVDRRVLETE----------------------------------------------EVYSAKFSEEAKSICKMLLTK  242 (285)
T ss_pred             HHHHHHHhhhccc----------------------------------------------cccCccCCHHHHHHHHHHccC
Confidence            4333322111100                                              011234466889999999999


Q ss_pred             CCCCCCC-----HHHHhcCCCCCCC
Q 013941          406 DPAERLK-----AREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~t-----a~ell~hp~f~~~  425 (433)
                      ||++|||     +.++++|+||++-
T Consensus       243 ~P~~R~~~~~~~~~~l~~~~~~~~~  267 (285)
T cd05632         243 DPKQRLGCQEEGAGEVKRHPFFRNM  267 (285)
T ss_pred             CHhHcCCCcccChHHHHcChhhhcC
Confidence            9999999     8999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=6e-45  Score=347.88  Aligned_cols=255  Identities=27%  Similarity=0.429  Sum_probs=201.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.++||+|+||.||++++..+++.||+|++.+..    .....+..|+.++..+.|+++     +.+++.+.+.+.
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~~~   75 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWI-----TTLHYAFQDENN   75 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCE-----eeEEEEEecCCE
Confidence            36999999999999999999999999999999986422    222346678888888877766     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +|+|.+++.+.. ..+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus        76 ~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~---------------  139 (332)
T cd05623          76 LYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNG---------------  139 (332)
T ss_pred             EEEEEeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCC---------------
Confidence            99999999 999999997643 3689999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhC-----CCCCccchHHHHHHHHHHHHhCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILG-----LGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                  .++|+|||++......    .....||+.|+|||++.+     ..++.++|||||||++|||++|+.|
T Consensus       140 ------------~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~P  207 (332)
T cd05623         140 ------------HIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETP  207 (332)
T ss_pred             ------------CEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCC
Confidence                        4667777766432211    122479999999999863     4578999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...+..+....+.....                      ...++.                       ....++.++.+
T Consensus       208 f~~~~~~~~~~~i~~~~~----------------------~~~~p~-----------------------~~~~~s~~~~~  242 (332)
T cd05623         208 FYAESLVETYGKIMNHKE----------------------RFQFPA-----------------------QVTDVSEDAKD  242 (332)
T ss_pred             CCCCCHHHHHHHHhCCCc----------------------cccCCC-----------------------ccccCCHHHHH
Confidence            987766555444432110                      001110                       11345778999


Q ss_pred             HHHHhcccCCCC--CCCHHHHhcCCCCCC
Q 013941          398 LLQGLLRYDPAE--RLKAREALRHPFFTR  424 (433)
Q Consensus       398 li~~~L~~dP~~--R~ta~ell~hp~f~~  424 (433)
                      ||.+||..++++  |++++|+++||||.+
T Consensus       243 li~~ll~~~~~r~~r~~~~~~~~h~~f~~  271 (332)
T cd05623         243 LIRRLICSREHRLGQNGIEDFKQHPFFTG  271 (332)
T ss_pred             HHHHHccChhhhcCCCCHHHHhCCCCcCC
Confidence            999999765554  689999999999985

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-46  Score=357.05  Aligned_cols=254  Identities=26%  Similarity=0.479  Sum_probs=214.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEec-cchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~-~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +-|.|+..||.|+||.||+|.++.++-..|-|++. +.....+.+..||+||..+.||+|     |++++.|..++.++|
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~i-----vkLl~ayy~enkLwi  106 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVI-----VKLLSAYYFENKLWI  106 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHH-----HHHHHHHhccCceEE
Confidence            45899999999999999999999999888999886 445667888999999999998887     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +.||| ||-...++-.-+ +.+.+.++..+++|++.||.|||+++|||||||..|||++-+|                  
T Consensus       107 liEFC~GGAVDaimlEL~-r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldG------------------  167 (1187)
T KOG0579|consen  107 LIEFCGGGAVDAIMLELG-RVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDG------------------  167 (1187)
T ss_pred             EEeecCCchHhHHHHHhc-cccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecC------------------
Confidence            99999 777777766554 5899999999999999999999999999999999999998877                  


Q ss_pred             cccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhh-----CCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                               .++|+|||.+....   ....++.||++|||||+..     ..+|+.++||||||++|.||..+.+|-...
T Consensus       168 ---------dirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhel  238 (1187)
T KOG0579|consen  168 ---------DIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHEL  238 (1187)
T ss_pred             ---------cEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCcccc
Confidence                     46777777665432   2345579999999999975     457999999999999999999999999887


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +....+..|...-.  |.                                             .-.+..++..+.|||.+
T Consensus       239 npMRVllKiaKSeP--PT---------------------------------------------LlqPS~Ws~~F~DfLk~  271 (1187)
T KOG0579|consen  239 NPMRVLLKIAKSEP--PT---------------------------------------------LLQPSHWSRSFSDFLKR  271 (1187)
T ss_pred             chHHHHHHHhhcCC--Cc---------------------------------------------ccCcchhhhHHHHHHHH
Confidence            77776665544211  11                                             11223457799999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||.+||..||++.++|+||||++.
T Consensus       272 cL~Knp~~Rp~aaqll~Hpfv~~~  295 (1187)
T KOG0579|consen  272 CLVKNPRNRPPAAQLLKHPFVQNA  295 (1187)
T ss_pred             HHhcCCccCCCHHHHhhCcccccC
Confidence            999999999999999999999964

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-48  Score=336.32  Aligned_cols=252  Identities=25%  Similarity=0.439  Sum_probs=212.1

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      -|.++.+||+|+||.||+|.++.+|+.+|||.+.- +...+++.+|+.|++++..+.+     |++++.|-....+||||
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV-~sDLQEIIKEISIMQQC~S~yV-----VKYYGSYFK~sDLWIVM  107 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPV-DTDLQEIIKEISIMQQCKSKYV-----VKYYGSYFKHSDLWIVM  107 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCc-cchHHHHHHHHHHHHHcCCchh-----hhhhhhhccCCceEeeh
Confidence            48899999999999999999999999999999865 3445778899999999987766     99999998889999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||| .|++.++++.+. +.+++..+..+++.-+.||+|||...-||||||..|||++.+|+                   
T Consensus       108 EYCGAGSiSDI~R~R~-K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~-------------------  167 (502)
T KOG0574|consen  108 EYCGAGSISDIMRARR-KPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGI-------------------  167 (502)
T ss_pred             hhcCCCcHHHHHHHhc-CCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccch-------------------
Confidence            999 899999998654 68999999999999999999999999999999999999987774                   


Q ss_pred             cCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                              .||+|||.|....+   ...++.||+.|||||++..-.|+.++||||||++..||..|++||........+.
T Consensus       168 --------AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRAIF  239 (502)
T KOG0574|consen  168 --------AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRAIF  239 (502)
T ss_pred             --------hhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccceeE
Confidence                    56666666654433   3466899999999999999999999999999999999999999998755443322


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      +|   .-.+|+                                            ...-+..++.++.|||++||.++|+
T Consensus       240 MI---PT~PPP--------------------------------------------TF~KPE~WS~~F~DFi~~CLiK~PE  272 (502)
T KOG0574|consen  240 MI---PTKPPP--------------------------------------------TFKKPEEWSSEFNDFIRSCLIKKPE  272 (502)
T ss_pred             ec---cCCCCC--------------------------------------------CCCChHhhhhHHHHHHHHHhcCCHH
Confidence            22   111111                                            1112234578999999999999999


Q ss_pred             CCCCHHHHhcCCCCCCC
Q 013941          409 ERLKAREALRHPFFTRD  425 (433)
Q Consensus       409 ~R~ta~ell~hp~f~~~  425 (433)
                      +|-||.++++|||+++.
T Consensus       273 ~R~TA~~L~~H~FiknA  289 (502)
T KOG0574|consen  273 ERKTALRLCEHTFIKNA  289 (502)
T ss_pred             HHHHHHHHhhhhhhcCC
Confidence            99999999999999874

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=4.9e-45  Score=347.00  Aligned_cols=243  Identities=27%  Similarity=0.399  Sum_probs=194.9

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHH-HHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEID-VLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~-~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|++..+++.||+|++.+..    .....+..|.. +++.+.|+++     +++++++.+.+..|+||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~i-----v~~~~~~~~~~~~~lv~   75 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFL-----VGLHYSFQTAEKLYFVL   75 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCc-----cceeeEEEcCCEEEEEE
Confidence            47999999999999999999999999987532    12233444443 5667777776     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|...+....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|                    
T Consensus        76 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~--------------------  133 (321)
T cd05603          76 DYVNGGELFFHLQRER--CFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQG--------------------  133 (321)
T ss_pred             cCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCC--------------------
Confidence            999 899998887654  689999999999999999999999999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .+||+|||++....   .......||+.|+|||++.+..++.++|||||||++|||++|..||.+.+......
T Consensus       134 -------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~  206 (321)
T cd05603         134 -------HVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYD  206 (321)
T ss_pred             -------CEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHHHH
Confidence                   46677777665321   11233578999999999998889999999999999999999999998876554443


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.....                                                  ......+.++.++|.+||+.||.
T Consensus       207 ~i~~~~~--------------------------------------------------~~~~~~~~~~~~li~~~l~~~p~  236 (321)
T cd05603         207 NILHKPL--------------------------------------------------QLPGGKTVAACDLLVGLLHKDQR  236 (321)
T ss_pred             HHhcCCC--------------------------------------------------CCCCCCCHHHHHHHHHHccCCHh
Confidence            3322110                                                  11123466899999999999999


Q ss_pred             CCCCH----HHHhcCCCCCC
Q 013941          409 ERLKA----REALRHPFFTR  424 (433)
Q Consensus       409 ~R~ta----~ell~hp~f~~  424 (433)
                      +|+++    .++++|+||..
T Consensus       237 ~R~~~~~~~~~~~~~~~~~~  256 (321)
T cd05603         237 RRLGAKADFLEIKNHVFFSP  256 (321)
T ss_pred             hcCCCCCCHHHHhCCCCcCC
Confidence            99875    59999999975

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=5.8e-45  Score=347.72  Aligned_cols=255  Identities=25%  Similarity=0.408  Sum_probs=202.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||++++..+++.||+|++.+..    .....+..|+.++..+.|+++     +.+++++.+.+.
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~l~~~~~~~~~   75 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWI-----TTLHYAFQDENY   75 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEEcCCE
Confidence            46999999999999999999999999999999986532    223346678888888877776     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus        76 ~~lv~Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~---------------  139 (331)
T cd05624          76 LYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNG---------------  139 (331)
T ss_pred             EEEEEeCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCC---------------
Confidence            99999999 999999998643 3689999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhC-----CCCCccchHHHHHHHHHHHHhCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILG-----LGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                  .+||+|||++.......    ....||+.|+|||++.+     ..++.++|||||||++|+|++|+.|
T Consensus       140 ------------~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~P  207 (331)
T cd05624         140 ------------HIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETP  207 (331)
T ss_pred             ------------CEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCC
Confidence                        46677777665432221    22479999999999876     4578999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...+..+....+......                      ..++                       .....++.++++
T Consensus       208 f~~~~~~~~~~~i~~~~~~----------------------~~~p-----------------------~~~~~~~~~~~~  242 (331)
T cd05624         208 FYAESLVETYGKIMNHEER----------------------FQFP-----------------------SHITDVSEEAKD  242 (331)
T ss_pred             ccCCCHHHHHHHHHcCCCc----------------------ccCC-----------------------CccccCCHHHHH
Confidence            9877665544433321100                      0011                       011235678999


Q ss_pred             HHHHhcccCCCC--CCCHHHHhcCCCCCC
Q 013941          398 LLQGLLRYDPAE--RLKAREALRHPFFTR  424 (433)
Q Consensus       398 li~~~L~~dP~~--R~ta~ell~hp~f~~  424 (433)
                      ||.+||..++++  |++++++++||||+.
T Consensus       243 li~~ll~~~~~~~~~~~~~~~~~h~~f~~  271 (331)
T cd05624         243 LIQRLICSRERRLGQNGIEDFKKHAFFEG  271 (331)
T ss_pred             HHHHHccCchhhcCCCCHHHHhcCCCcCC
Confidence            999999976654  469999999999975

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=1.4e-44  Score=336.71  Aligned_cols=248  Identities=23%  Similarity=0.414  Sum_probs=196.5

Q ss_pred             ccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941          100 MGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus       100 lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ||+|+||.||++++..+|+.||+|.+....    ........|++++++++|+++     ++++++++.+.++|+||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i-----~~~~~~~~~~~~~~lv~e~~   75 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFI-----VNLAYAFESKTHLCLVMSLM   75 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcE-----EEEEEEEecCCeEEEEEecC
Confidence            799999999999999999999999986422    122345569999999988877     99999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                       +++|.+++.......+++..+..++.||+.||+|||++||+||||||+||+++.++                       
T Consensus        76 ~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~-----------------------  132 (277)
T cd05607          76 NGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQG-----------------------  132 (277)
T ss_pred             CCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCC-----------------------
Confidence             99999988766555689999999999999999999999999999999999997655                       


Q ss_pred             CCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER  332 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~  332 (433)
                          .++|+|||++.......  ....||..|+|||++.+..++.++|||||||++|+|++|..||...........+.+
T Consensus       133 ----~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~  208 (277)
T cd05607         133 ----NCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKR  208 (277)
T ss_pred             ----CEEEeeceeeeecCCCceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHH
Confidence                46667777665433221  224689999999999988899999999999999999999999976433211111111


Q ss_pred             -HhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCC
Q 013941          333 -VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL  411 (433)
Q Consensus       333 -~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~  411 (433)
                       .....                                              .......++.++++||.+||+.||++||
T Consensus       209 ~~~~~~----------------------------------------------~~~~~~~~~~~~~~li~~~L~~~P~~R~  242 (277)
T cd05607         209 RTLEDE----------------------------------------------VKFEHQNFTEESKDICRLFLAKKPEDRL  242 (277)
T ss_pred             Hhhccc----------------------------------------------cccccccCCHHHHHHHHHHhccCHhhCC
Confidence             00000                                              0000123567899999999999999999


Q ss_pred             CH----HHHhcCCCCCCC
Q 013941          412 KA----REALRHPFFTRD  425 (433)
Q Consensus       412 ta----~ell~hp~f~~~  425 (433)
                      ++    ++++.||||+..
T Consensus       243 ~~~~~~~~~~~h~~f~~~  260 (277)
T cd05607         243 GSREKNDDPRKHEFFKTI  260 (277)
T ss_pred             CCccchhhhhcChhhcCC
Confidence            99    678899999763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-46  Score=348.20  Aligned_cols=257  Identities=28%  Similarity=0.448  Sum_probs=217.2

Q ss_pred             CCeEE--eccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRI--LSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~--~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .-|+|  .+.||+|.||+||-|.++.+|+.||||++.+.   .+......+|+.||+.+.||+|     |.+...|++.+
T Consensus       562 tvYQif~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGi-----V~le~M~ET~e  636 (888)
T KOG4236|consen  562 TVYQIFADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGI-----VNLECMFETPE  636 (888)
T ss_pred             HHHHhhhHhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCe-----eEEEEeecCCc
Confidence            34655  47899999999999999999999999999753   2445778889999999999998     99999999999


Q ss_pred             eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          167 HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       167 ~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .+++|||.+.|++.+.+-.....++++...+.++.||+.||.|||.++|+|+||||+|||+.+.                
T Consensus       637 rvFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~----------------  700 (888)
T KOG4236|consen  637 RVFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASA----------------  700 (888)
T ss_pred             eEEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccC----------------
Confidence            9999999997776666654445689999999999999999999999999999999999999653                


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                              +.-.++||||||+|++..+.  ..+++||+.|+|||++.+..|+..-|+||.|||+|.-+.|..||....+ 
T Consensus       701 --------~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEd-  771 (888)
T KOG4236|consen  701 --------SPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDED-  771 (888)
T ss_pred             --------CCCCceeeccccceeecchhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccc-
Confidence                    34568999999999987754  3568999999999999999999999999999999999999999975544 


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                       +..+|++.-.-.|.                                              ..+.+++..+.|||..+|+
T Consensus       772 -IndQIQNAaFMyPp----------------------------------------------~PW~eis~~AidlIn~LLq  804 (888)
T KOG4236|consen  772 -INDQIQNAAFMYPP----------------------------------------------NPWSEISPEAIDLINNLLQ  804 (888)
T ss_pred             -hhHHhhccccccCC----------------------------------------------CchhhcCHHHHHHHHHHHH
Confidence             33444332111111                                              1235668899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ..-.+|.|.++.|.|||+++.
T Consensus       805 Vkm~kRysvdk~lsh~Wlq~y  825 (888)
T KOG4236|consen  805 VKMRKRYSVDKSLSHPWLQDY  825 (888)
T ss_pred             HHHHHhcchHhhccchhhhcc
Confidence            999999999999999999974

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=1.2e-44  Score=361.53  Aligned_cols=254  Identities=24%  Similarity=0.273  Sum_probs=204.2

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ..++|++.+.||+|+||+||+|++..+++.||||++...   ......+.+|+.++..+.|+++     +++++.+...+
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~i-----v~~~~~~~~~~  104 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSI-----VKCHEDFAKKD  104 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcE-----EEeecceeccc
Confidence            346899999999999999999999999999999998643   2334556788988888887776     88777664322


Q ss_pred             --------eEEEEEccC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccc
Q 013941          167 --------HICIVFEKL-GPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV  235 (433)
Q Consensus       167 --------~~~lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l  235 (433)
                              .+++||||+ +|+|.+++....  ...+++..+..++.||+.||+|||++||+||||||+|||++.++    
T Consensus       105 ~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~----  180 (496)
T PTZ00283        105 PRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNG----  180 (496)
T ss_pred             ccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCC----
Confidence                    478999999 999999987432  34689999999999999999999999999999999999997655    


Q ss_pred             cCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHH
Q 013941          236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE  310 (433)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~e  310 (433)
                                             .+||+|||++.....     ......||+.|+|||++.+..++.++|||||||++||
T Consensus       181 -----------------------~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilye  237 (496)
T PTZ00283        181 -----------------------LVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYE  237 (496)
T ss_pred             -----------------------CEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHH
Confidence                                   466777776654321     1234579999999999999899999999999999999


Q ss_pred             HHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC
Q 013941          311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH  390 (433)
Q Consensus       311 l~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (433)
                      |++|+.||.+.+....+..+.....                                                 ......
T Consensus       238 LltG~~Pf~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~  268 (496)
T PTZ00283        238 LLTLKRPFDGENMEEVMHKTLAGRY-------------------------------------------------DPLPPS  268 (496)
T ss_pred             HHHCCCCCCCCCHHHHHHHHhcCCC-------------------------------------------------CCCCCC
Confidence            9999999987665544433321100                                                 001234


Q ss_pred             chHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          391 SAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       391 ~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      +++++.+||.+||+.||++||++.++++|||++.
T Consensus       269 ~~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~  302 (496)
T PTZ00283        269 ISPEMQEIVTALLSSDPKRRPSSSKLLNMPICKL  302 (496)
T ss_pred             CCHHHHHHHHHHcccChhhCcCHHHHHhCHHHHH
Confidence            5678999999999999999999999999999874

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.9e-45  Score=340.74  Aligned_cols=253  Identities=29%  Similarity=0.487  Sum_probs=200.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEec---cchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~---~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ..|+++++||+||.+.||++... +.+.||+|.+.   .++....-+.+|+..|.+|+.+    .+||++++|-..++.+
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s-~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~----~~IIqL~DYEv~d~~l  435 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNS-DKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGH----DKIIQLYDYEVTDGYL  435 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecC-CCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCC----ceEEEEeeeeccCceE
Confidence            35999999999999999999854 44567777654   3445667788999999999843    5669999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      |||||+-..+|..+|++... .++.-.++.+..||+.|+.++|..||||.||||+|+|+..                   
T Consensus       436 YmvmE~Gd~DL~kiL~k~~~-~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlVk-------------------  495 (677)
T KOG0596|consen  436 YMVMECGDIDLNKILKKKKS-IDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLVK-------------------  495 (677)
T ss_pred             EEEeecccccHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEEe-------------------
Confidence            99999999999999998762 3444589999999999999999999999999999999854                   


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCCcc-----cccCCcccchhhhhCCC-----------CCccchHHHHHHHHHHHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSY-----VVSTRHYRAPEVILGLG-----------WNYPCDLWSVGCILVELC  312 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~-----~~gt~~y~aPE~~~~~~-----------~~~~~DiwSlG~il~el~  312 (433)
                               +.+||+|||+|.......+.     -+||+.|||||.+....           .++++||||||||||+|+
T Consensus       496 ---------G~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMv  566 (677)
T KOG0596|consen  496 ---------GRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMV  566 (677)
T ss_pred             ---------eeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHH
Confidence                     46899999999766555433     48999999999996432           568999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      .|+.||....  .....+..+..+                   +..+.||+..                         ..
T Consensus       567 YgktPf~~~~--n~~aKl~aI~~P-------------------~~~Iefp~~~-------------------------~~  600 (677)
T KOG0596|consen  567 YGKTPFGQII--NQIAKLHAITDP-------------------NHEIEFPDIP-------------------------EN  600 (677)
T ss_pred             hcCCchHHHH--HHHHHHHhhcCC-------------------CccccccCCC-------------------------Cc
Confidence            9999996432  233333333221                   1122222211                         11


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      .++.++++.||.+||.+|||+.++|+|||++-
T Consensus       601 ~~li~~mK~CL~rdPkkR~si~eLLqhpFl~~  632 (677)
T KOG0596|consen  601 DELIDVMKCCLARDPKKRWSIPELLQHPFLQI  632 (677)
T ss_pred             hHHHHHHHHHHhcCcccCCCcHHHhcCccccc
Confidence            24899999999999999999999999999985

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=2.1e-44  Score=342.14  Aligned_cols=285  Identities=25%  Similarity=0.463  Sum_probs=200.3

Q ss_pred             eccccccccEEEEEEEecC--CCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec--cCCeEEEEE
Q 013941           97 LSKMGEGTFGQVVECFDNE--KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD--YRNHICIVF  172 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~--~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~--~~~~~~lv~  172 (433)
                      ..+||+|+||.||+|++..  ++..||+|.+.... ......+|+.+++.++|+|+     +++++++.  .+..+++||
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~-~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~~~~~~lv~   79 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG-ISMSACREIALLRELKHPNV-----IALQKVFLSHSDRKVWLLF   79 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCC-CcHHHHHHHHHHHhCCCCCe-----eeEEEEEeccCCCeEEEEE
Confidence            3689999999999999654  56789999986533 23457789999999998887     99999874  457899999


Q ss_pred             ccCCCCHHHHHHhcC-------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          173 EKLGPSLYDFLRKNS-------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       173 e~~~~~L~~~l~~~~-------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ||++++|.+++....       ...+++..++.++.||+.||.|||++||+||||||+|||+..++              
T Consensus        80 e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~--------------  145 (317)
T cd07867          80 DYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEG--------------  145 (317)
T ss_pred             eeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCC--------------
Confidence            999889988875321       12588999999999999999999999999999999999995432              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                               +.+..+||+|||++......      .....||..|+|||++.+. .++.++|||||||++|||++|.+||
T Consensus       146 ---------~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f  216 (317)
T cd07867         146 ---------PERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF  216 (317)
T ss_pred             ---------CCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCc
Confidence                     23446888888887654322      1235789999999999774 5899999999999999999999999


Q ss_pred             CCCCh---------HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccC
Q 013941          319 QTHEN---------LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD  389 (433)
Q Consensus       319 ~~~~~---------~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (433)
                      .....         ...+..+...++......+....... .+......  +....         ...............
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~  284 (317)
T cd07867         217 HCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMP-EYPTLQKD--FRRTT---------YANSSLIKYMEKHKV  284 (317)
T ss_pred             ccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcc-cchhhhhh--hcccc---------cCCchhhhhhhcccC
Confidence            75432         23344444444443332221111000 00000000  00000         000000000111112


Q ss_pred             CchHHHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          390 HSAGDLIDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       390 ~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ..+..+.+||.+||+.||.+|||++|+|+||||
T Consensus       285 ~~~~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         285 KPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             CCChHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            345678999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=2.1e-44  Score=359.64  Aligned_cols=252  Identities=23%  Similarity=0.264  Sum_probs=205.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCC-CcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ..|.+.+.||+|+||.||+|.+..+ ++.||+|.+.... .....+.+|+.+++.+.|+||     +++++++...+.+|
T Consensus        67 ~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpni-----v~~~~~~~~~~~~~  141 (478)
T PTZ00267         67 HMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGI-----VKHFDDFKSDDKLL  141 (478)
T ss_pred             eeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCE-----eEEEEEEEECCEEE
Confidence            3599999999999999999998877 7889999775433 333456779999999998887     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          170 IVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      |||||+ +++|.+++...  ....+++..+..++.||+.||.|||++||+||||||+|||++.++               
T Consensus       142 lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~---------------  206 (478)
T PTZ00267        142 LIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTG---------------  206 (478)
T ss_pred             EEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCC---------------
Confidence            999999 99999988642  223689999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                  .+||+|||++......     ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.
T Consensus       207 ------------~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~  274 (478)
T PTZ00267        207 ------------IIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGP  274 (478)
T ss_pred             ------------cEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence                        4667777766543321     23357999999999999989999999999999999999999999876


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +..+.+..+....  .+                                               .....++.++.+||.+
T Consensus       275 ~~~~~~~~~~~~~--~~-----------------------------------------------~~~~~~s~~~~~li~~  305 (478)
T PTZ00267        275 SQREIMQQVLYGK--YD-----------------------------------------------PFPCPVSSGMKALLDP  305 (478)
T ss_pred             CHHHHHHHHHhCC--CC-----------------------------------------------CCCccCCHHHHHHHHH
Confidence            6555444332210  00                                               0112346789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      ||..||++|||+++++.|+|++.
T Consensus       306 ~L~~dP~~Rps~~~~l~~~~~~~  328 (478)
T PTZ00267        306 LLSKNPALRPTTQQLLHTEFLKY  328 (478)
T ss_pred             HhccChhhCcCHHHHHhCHHHHH
Confidence            99999999999999999999863

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=2.9e-44  Score=336.87  Aligned_cols=250  Identities=27%  Similarity=0.449  Sum_probs=210.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||++.+..+++.||+|++....    ...+.+.+|+++++++.|+++     +++++++.+++.
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~   75 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFL-----VNLYGSFQDDSN   75 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCc-----cceeeEEEcCCe
Confidence            36999999999999999999999999999999986432    334567789999999998877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+||||+ +++|.+++....  .+++..+..++.||+.||.|||++||+|+||+|+|||++.++               
T Consensus        76 ~~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~---------------  138 (290)
T cd05580          76 LYLVMEYVPGGELFSHLRKSG--RFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDG---------------  138 (290)
T ss_pred             EEEEEecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCC---------------
Confidence            99999999 999999998764  799999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  .++|+|||++...........|++.|+|||.+.+..++.++||||||+++|+|++|..||...+....
T Consensus       139 ------------~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~  206 (290)
T cd05580         139 ------------YIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQI  206 (290)
T ss_pred             ------------CEEEeeCCCccccCCCCCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                        46777777776554444456789999999999888889999999999999999999999987664433


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+......                                                  .....+..+.++|.+||+.|
T Consensus       207 ~~~~~~~~~~--------------------------------------------------~~~~~~~~l~~li~~~l~~~  236 (290)
T cd05580         207 YEKILEGKVR--------------------------------------------------FPSFFSPDAKDLIRNLLQVD  236 (290)
T ss_pred             HHHHhcCCcc--------------------------------------------------CCccCCHHHHHHHHHHccCC
Confidence            3333211111                                                  11233668999999999999


Q ss_pred             CCCCC-----CHHHHhcCCCCCCC
Q 013941          407 PAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       407 P~~R~-----ta~ell~hp~f~~~  425 (433)
                      |++|+     +++|+++||||+..
T Consensus       237 p~~R~~~~~~~~~~l~~~~~~~~~  260 (290)
T cd05580         237 LTKRLGNLKNGVNDIKNHPWFAGI  260 (290)
T ss_pred             HHHccCcccCCHHHHHcCcccccC
Confidence            99999     99999999999864

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=1.5e-44  Score=344.56  Aligned_cols=300  Identities=19%  Similarity=0.242  Sum_probs=208.4

Q ss_pred             Eecccccc--ccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           96 ILSKMGEG--TFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        96 ~~~~lg~G--~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ++++||+|  +|++||++.+..+|+.||+|+++..   ......+.+|+.+++.++|+||     +++++++..++..|+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpni-----v~~~~~~~~~~~~~l   76 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNI-----VPYRATFIADNELWV   76 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCe-----eeEEEEEEECCEEEE
Confidence            56789999  7899999999999999999998753   2334567789999999998887     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.++.++++||+...       
T Consensus        77 v~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~-------  149 (327)
T cd08227          77 VTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNL-------  149 (327)
T ss_pred             EEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhh-------
Confidence            99999 8999999976544568999999999999999999999999999999999999988888777776432       


Q ss_pred             cccCCCCCCCeeeecCCCCccc-cCCCcccccCCcccchhhhhC--CCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFE-HQDHSYVVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~-~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                 .+.++|..... ........++..|+|||++.+  ..++.++|||||||++|||++|..||........
T Consensus       150 -----------~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~  218 (327)
T cd08227         150 -----------SMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQM  218 (327)
T ss_pred             -----------ccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHH
Confidence                       22222221111 111122357788999999976  3589999999999999999999999986554433


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhh----cCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYF----RRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ....  ..+..|....... ...+...    ..+....+.........     ...............+++++.+||.+|
T Consensus       219 ~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~li~~~  290 (327)
T cd08227         219 LLEK--LNGTVPCLLDTTT-IPAEELTMKPSRSGANSGLGESTTVSTP-----RPSNGESSSHPYNRTFSPHFHHFVEQC  290 (327)
T ss_pred             HHHH--hcCCccccccccc-hhhhhcccCCcccCCcCCCCcccccCCc-----CccccCCcccccccccCHHHHHHHHHH
Confidence            2222  2222221110000 0000000    00000000000000000     000000000112234577899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCc
Q 013941          403 LRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      |+.||++|||++|+++||||++-.
T Consensus       291 l~~dP~~Rpt~~ell~~p~f~~~~  314 (327)
T cd08227         291 LQRNPDARPSASTLLNHSFFKQIK  314 (327)
T ss_pred             HhhCchhcCCHHHHhcChhhhhcc
Confidence            999999999999999999998743

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=2.6e-44  Score=333.90  Aligned_cols=253  Identities=22%  Similarity=0.403  Sum_probs=202.0

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceecc----
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDY----  164 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~----  164 (433)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++.........+..|+.++.++ .|+|+     +++++++..    
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i-----~~~~~~~~~~~~~   78 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNI-----ATYYGAFIKKNPP   78 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCe-----eeEeeEEeecCCC
Confidence            34679999999999999999999999999999999976655566788899999988 46666     999988764    


Q ss_pred             --CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          165 --RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       165 --~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                        ...+|+||||+ +++|.+++.......+++..+..++.||+.||+|||+++|+||||||+||+++.++          
T Consensus        79 ~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~----------  148 (272)
T cd06637          79 GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENA----------  148 (272)
T ss_pred             CCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCC----------
Confidence              35789999999 88999999875545789999999999999999999999999999999999997655          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhC-----CCCCccchHHHHHHHHHHHHh
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILG-----LGWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~il~el~~  313 (433)
                                       .++|+|||++.....   ......|+..|+|||++.+     ..++.++|||||||++|+|++
T Consensus       149 -----------------~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~  211 (272)
T cd06637         149 -----------------EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAE  211 (272)
T ss_pred             -----------------CEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHh
Confidence                             467777776654322   1233578999999999863     357889999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      |..||...........+....  .                                              ........+.
T Consensus       212 g~~p~~~~~~~~~~~~~~~~~--~----------------------------------------------~~~~~~~~~~  243 (272)
T cd06637         212 GAPPLCDMHPMRALFLIPRNP--A----------------------------------------------PRLKSKKWSK  243 (272)
T ss_pred             CCCCccccCHHHHHHHHhcCC--C----------------------------------------------CCCCCCCcCH
Confidence            999997554332222111100  0                                              0000123456


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ++.+||.+||..||.+|||+.++++||||
T Consensus       244 ~~~~li~~~l~~~p~~Rpt~~~il~~~~~  272 (272)
T cd06637         244 KFQSFIESCLVKNHSQRPTTEQLMKHPFI  272 (272)
T ss_pred             HHHHHHHHHcCCChhhCCCHHHHhhCCCC
Confidence            89999999999999999999999999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=4.2e-44  Score=369.09  Aligned_cols=277  Identities=26%  Similarity=0.437  Sum_probs=214.5

Q ss_pred             ecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecce
Q 013941           85 AIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNW  161 (433)
Q Consensus        85 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~  161 (433)
                      ..++...++|++++.||+|+||+||+|++..+++.||+|++...   ......+..|+.+++.|.|++|     ++++++
T Consensus         6 ~~ge~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNI-----Vrl~d~   80 (1021)
T PTZ00266          6 DDGESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNI-----VRYIDR   80 (1021)
T ss_pred             cCCccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCc-----CeEEEE
Confidence            34566677899999999999999999999999999999998642   2345667889999999999888     999998


Q ss_pred             ecc--CCeEEEEEccC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhC-------CcEecCCCCCcEEEee
Q 013941          162 FDY--RNHICIVFEKL-GPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMHEL-------RLIHTDLKPENILLVS  229 (433)
Q Consensus       162 ~~~--~~~~~lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~-------~ivHrDikp~NIli~~  229 (433)
                      |.+  ...+||||||+ +++|.++|....  ...+++..++.|+.||+.||.|||+.       +||||||||+||||+.
T Consensus        81 f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s  160 (1021)
T PTZ00266         81 FLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLST  160 (1021)
T ss_pred             EEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeec
Confidence            754  46799999999 899999987531  24699999999999999999999984       4999999999999975


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCC--CCCccchHHHHH
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGL--GWNYPCDLWSVG  305 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~--~~~~~~DiwSlG  305 (433)
                      ... .+.+...         .....+....+||+|||++......  .....||+.|+|||++.+.  .++.++||||||
T Consensus       161 ~~~-~lg~i~~---------~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG  230 (1021)
T PTZ00266        161 GIR-HIGKITA---------QANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALG  230 (1021)
T ss_pred             Ccc-ccccccc---------cccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHH
Confidence            321 1111100         0011234456899999998765432  2345799999999998653  588999999999


Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          306 CILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       306 ~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      ||||+|++|..||...+....+.........+|                                               
T Consensus       231 ~ILYELLTGk~PF~~~~~~~qli~~lk~~p~lp-----------------------------------------------  263 (1021)
T PTZ00266        231 CIIYELCSGKTPFHKANNFSQLISELKRGPDLP-----------------------------------------------  263 (1021)
T ss_pred             HHHHHHHHCCCCCCcCCcHHHHHHHHhcCCCCC-----------------------------------------------
Confidence            999999999999986655443322211100000                                               


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                        ....+.++.+||..||+.+|.+|||+.|+|.|+||+..
T Consensus       264 --i~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i  301 (1021)
T PTZ00266        264 --IKGKSKELNILIKNLLNLSAKERPSALQCLGYQIIKNV  301 (1021)
T ss_pred             --cCCCCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhc
Confidence              12236689999999999999999999999999999854

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-46  Score=349.03  Aligned_cols=252  Identities=25%  Similarity=0.375  Sum_probs=215.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ..|.-++.||.|+||.||.|++..+.+.||||.+...    ...-+.+.+|+..|+++.|||+     |.+.++|-.+..
T Consensus        26 klf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPnt-----ieYkgCyLre~T  100 (948)
T KOG0577|consen   26 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNT-----IEYKGCYLREHT  100 (948)
T ss_pred             HHHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCc-----ccccceeeccch
Confidence            4588899999999999999999999999999998632    2344678899999999999988     999999999999


Q ss_pred             EEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          168 ICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       168 ~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      .|||||||-|+-.|++.-.. +.+.+..+..|+.+.+.||.|||+.+.||||||..|||+++.|                
T Consensus       101 aWLVMEYClGSAsDlleVhk-KplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g----------------  163 (948)
T KOG0577|consen  101 AWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPG----------------  163 (948)
T ss_pred             HHHHHHHHhccHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCC----------------
Confidence            99999999888888887443 4799999999999999999999999999999999999997665                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC---CCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG---LGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                 .|||+|||+|.+... ..+++||++|||||++..   +.|+-++||||||++..||...++|+-..+..
T Consensus       164 -----------~VKLaDFGSAsi~~P-AnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAM  231 (948)
T KOG0577|consen  164 -----------LVKLADFGSASIMAP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM  231 (948)
T ss_pred             -----------eeeeccccchhhcCc-hhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHH
Confidence                       678899998876544 345699999999999974   46999999999999999999999998877777


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      ..+..|.+.-.+.                                                -....++..+++||..||+
T Consensus       232 SALYHIAQNesPt------------------------------------------------Lqs~eWS~~F~~Fvd~CLq  263 (948)
T KOG0577|consen  232 SALYHIAQNESPT------------------------------------------------LQSNEWSDYFRNFVDSCLQ  263 (948)
T ss_pred             HHHHHHHhcCCCC------------------------------------------------CCCchhHHHHHHHHHHHHh
Confidence            7766665422110                                                0123557899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +-|.+|||.+++|.|+|+...
T Consensus       264 KipqeRptse~ll~H~fv~R~  284 (948)
T KOG0577|consen  264 KIPQERPTSEELLKHRFVLRE  284 (948)
T ss_pred             hCcccCCcHHHHhhcchhccC
Confidence            999999999999999999875

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=7.8e-44  Score=336.98  Aligned_cols=283  Identities=29%  Similarity=0.441  Sum_probs=215.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh---hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC--C
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR--N  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~--~  166 (433)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|+++....   ......+|+.++++++|+++     +++++++...  +
T Consensus         7 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~   81 (309)
T cd07845           7 TEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNI-----VELKEVVVGKHLD   81 (309)
T ss_pred             cceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCC-----cceEEEEecCCCC
Confidence            569999999999999999999999999999999864321   22345679999999999888     8999888654  5


Q ss_pred             eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          167 HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       167 ~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .+++||||++++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.              
T Consensus        82 ~~~lv~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~--------------  146 (309)
T cd07845          82 SIFLVMEYCEQDLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGC--------------  146 (309)
T ss_pred             eEEEEEecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCC--------------
Confidence            789999999879999887643 46899999999999999999999999999999999999976654              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   ++|+|||.+......   .....++..|+|||++.+ ..++.++|||||||++|+|++|..||...+
T Consensus       147 -------------~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~  213 (309)
T cd07845         147 -------------LKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKS  213 (309)
T ss_pred             -------------EEECccceeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                         566666655443321   122345788999999876 457899999999999999999999999988


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+.+..+....+..+..++........     ......+..              ... .........+.++.+||.+|
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~li~~m  273 (309)
T cd07845         214 EIEQLDLIIQLLGTPNESIWPGFSDLPL-----VGKFTLPKQ--------------PYN-NLKHKFPWLSEAGLRLLNFL  273 (309)
T ss_pred             HHHHHHHHHHhcCCCChhhchhhhcccc-----cccccccCC--------------CCC-chHHhccccCHHHHHHHHHH
Confidence            8888888888777655443222111000     000000000              000 00011123477899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          403 LRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      |++||++|||++|+++||||++...
T Consensus       274 l~~dp~~R~t~~~il~h~~f~~~~~  298 (309)
T cd07845         274 LMYDPKKRATAEEALESSYFKEKPL  298 (309)
T ss_pred             hcCChhhCcCHHHHhcChhhccCCC
Confidence            9999999999999999999997543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=8.8e-44  Score=334.86  Aligned_cols=283  Identities=30%  Similarity=0.481  Sum_probs=215.6

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh------hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK------YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      +|++.+.||+|+||.||+|.+..+++.||+|.++....      ....+..|+.++++++|+++     +++++++.+.+
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----~~~~~~~~~~~   75 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNI-----IGLLDVFGHKS   75 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCC-----hhhhheeecCC
Confidence            58899999999999999999999999999999875432      23456679999999988887     99999999999


Q ss_pred             eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          167 HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       167 ~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ..++||||++++|.+++.... ..+++..+..++.||+.||.|||++||+|+||||+||+++.++.              
T Consensus        76 ~~~lv~e~~~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~--------------  140 (298)
T cd07841          76 NINLVFEFMETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGV--------------  140 (298)
T ss_pred             EEEEEEcccCCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCC--------------
Confidence            999999999889999997653 36999999999999999999999999999999999999977664              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   ++|+|||++......   .....++..|+|||.+.+ ..++.++|||||||++|+|++|.++|.+..
T Consensus       141 -------------~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~  207 (298)
T cd07841         141 -------------LKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDS  207 (298)
T ss_pred             -------------EEEccceeeeeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCc
Confidence                         555666655433221   122356788999999865 357899999999999999999999998877


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+.+..+.+..+......+....... .+..      +.               ..............+..+.+||.+|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~---------------~~~~~~~~~~~~~~~~~~~~li~~~  265 (298)
T cd07841         208 DIDQLGKIFEALGTPTEENWPGVTSLP-DYVE------FK---------------PFPPTPLKQIFPAASDDALDLLQRL  265 (298)
T ss_pred             cHHHHHHHHHHcCCCchhhhhhccccc-cccc------cc---------------ccCCcchhhhcccccHHHHHHHHHH
Confidence            777666666555444332221110000 0000      00               0000001112234577899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCccccC
Q 013941          403 LRYDPAERLKAREALRHPFFTRDVRRCG  430 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~~~~~  430 (433)
                      |++||++|||+.|+++|+||++.....+
T Consensus       266 l~~~P~~R~s~~e~l~~~~~~~~~~~~~  293 (298)
T cd07841         266 LTLNPNKRITARQALEHPYFSNDPAPTP  293 (298)
T ss_pred             hcCCcccCcCHHHHhhCccccCCCCCCC
Confidence            9999999999999999999999765544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=5.3e-44  Score=334.17  Aligned_cols=278  Identities=36%  Similarity=0.596  Sum_probs=214.6

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++.+.||+|+||.||+|.+..+++.||+|++....   .....+.+|+.+++++.|+++     +++++++..++..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~~~~~   75 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYV-----VKLLDVFPHGSGFV   75 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCC-----cceeeEEecCCeeE
Confidence            5899999999999999999999999999999987532   234567889999999988877     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||||++++|.+++.... ..+++..++.++.||+.||+|||+.||+|+||||+||+++.++.                 
T Consensus        76 ~v~e~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~-----------------  137 (286)
T cd07832          76 LVMEYMPSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGV-----------------  137 (286)
T ss_pred             EEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCc-----------------
Confidence            999999999999987644 46999999999999999999999999999999999999976554                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                ++|+|||.+......    .....|+..|+|||++.+. .++.++|||||||++|+|++|.++|.+..+.
T Consensus       138 ----------~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~  207 (286)
T cd07832         138 ----------LKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDI  207 (286)
T ss_pred             ----------EEEeeeeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHH
Confidence                      566666665543322    1234688999999998765 4689999999999999999999999888877


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      ..+..+....+......+...... ..    .....++...               ...........+.++.+||.+||+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~li~~~l~  267 (286)
T cd07832         208 EQLAIVFRTLGTPNEETWPGLTSL-PD----YNKITFPESK---------------PIPLEEIFPDASPEALDLLKGLLV  267 (286)
T ss_pred             HHHHHHHHHcCCCChHHHhhccCc-ch----hhcccCCCCC---------------cchHHHhCCCccHHHHHHHHHHhc
Confidence            777776666554433221111000 00    0000111000               000111223456799999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCC
Q 013941          405 YDPAERLKAREALRHPFFT  423 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~  423 (433)
                      .||++|||++++++||||.
T Consensus       268 ~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         268 YDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             cChhhCCCHHHHhhCcCcC
Confidence            9999999999999999995

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=8.1e-44  Score=340.78  Aligned_cols=285  Identities=29%  Similarity=0.518  Sum_probs=214.1

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc---
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY---  164 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~---  164 (433)
                      +.++|++.+.||+|+||.||+|.+..+++.||+|++...  ......+.+|+.++++++|+|+     +++++++..   
T Consensus         3 ~~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~~   77 (336)
T cd07849           3 VGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENI-----IGILDIIRPPSF   77 (336)
T ss_pred             cccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCc-----Cchhheeecccc
Confidence            456899999999999999999999999999999998642  2334567789999999998887     888876543   


Q ss_pred             --CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          165 --RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       165 --~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                        ....|+|+||++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++.+         
T Consensus        78 ~~~~~~~lv~e~~~~~l~~~~~~~---~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~---------  145 (336)
T cd07849          78 ESFNDVYIVQELMETDLYKLIKTQ---HLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDL---------  145 (336)
T ss_pred             cccceEEEEehhcccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCE---------
Confidence              3468999999988998888654   59999999999999999999999999999999999999876655         


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                        +|+|||++......      .....||..|+|||.+.+ ..++.++|||||||++|+|++|+
T Consensus       146 ------------------kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~  207 (336)
T cd07849         146 ------------------KICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNR  207 (336)
T ss_pred             ------------------EECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence                              55555544332111      122468899999998765 46889999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhh-hhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADR-RAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      .||.+.+.......+...++..+......... ....+....   ..                 .............+.+
T Consensus       208 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~~~~~~~~~~~~~  267 (336)
T cd07849         208 PLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSL---PF-----------------KPKVPWNKLFPNADPK  267 (336)
T ss_pred             CCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhc---Cc-----------------CCcccHHHHhcccCcH
Confidence            99998887777777777776654432221110 000010000   00                 0000001112344778


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          395 LIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      +.+||.+||+.||++|||+.|+++||||.+-...+
T Consensus       268 ~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~~~  302 (336)
T cd07849         268 ALDLLDKMLTFNPHKRITVEEALAHPYLEQYHDPS  302 (336)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHhcCccccccCCCC
Confidence            99999999999999999999999999998765443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=7.9e-44  Score=332.80  Aligned_cols=277  Identities=32%  Similarity=0.532  Sum_probs=213.8

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++++.||.|++|.||+|++..+++.||||.++...   .....+.+|++++++++|+++     +++++++.+++..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~~   75 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI-----VKLLDVIHTENKLY   75 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCC-----cchhhhcccCCcEE
Confidence            4899999999999999999999999999999886432   223567789999999998887     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||||+.++|.+++.......+++..++.++.||+.||+|||++|++||||+|+||+++.++.                 
T Consensus        76 ~v~e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~-----------------  138 (284)
T cd07860          76 LVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGA-----------------  138 (284)
T ss_pred             EEeeccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCC-----------------
Confidence            999999779999987765567999999999999999999999999999999999999976664                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCC-CCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                ++|+|||.+......   .....++..|+|||++.+.. ++.++|||||||++|+|++|+.||.+.+..+
T Consensus       139 ----------~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~  208 (284)
T cd07860         139 ----------IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID  208 (284)
T ss_pred             ----------EEEeeccchhhcccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Confidence                      566666655433221   12235678899999887654 6889999999999999999999999888877


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+..+..+............ +..     .++..               ............+.+++++|.+||+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~---------------~~~~~~~~~~~~~~~~~~li~~~l~~  267 (284)
T cd07860         209 QLFRIFRTLGTPDEVVWPGVTSLPD-YKP-----SFPKW---------------ARQDFSKVVPPLDEDGRDLLSQMLHY  267 (284)
T ss_pred             HHHHHHHHhCCCChhhhhhhhHHHH-HHh-----hcccc---------------cccCHHHHcccCCHHHHHHHHHhcCC
Confidence            7777777666554433221111000 000     00000               00001111234567899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      ||++|||++++++||||
T Consensus       268 ~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         268 DPNKRISAKAALAHPFF  284 (284)
T ss_pred             CcccCCCHHHHhcCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.7e-44  Score=338.14  Aligned_cols=280  Identities=23%  Similarity=0.378  Sum_probs=215.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+....    .....+..|++++..+.|+++     +++++.+..++.
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~   75 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFL-----PTLYASFQTETY   75 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCc-----hhheeeeecCCE
Confidence            36999999999999999999999999999999987533    234567789999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+||||+ +++|.+++.......+++..++.++.||+.||+|||+.||+|+||||+||+++.++.++|+|||++.....
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  155 (316)
T cd05574          76 LCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDV  155 (316)
T ss_pred             EEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhcccc
Confidence            99999999 99999999865555799999999999999999999999999999999999999999888888887665433


Q ss_pred             CCCcccCCCCCCC-----ee-eecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          247 DGSYFKNLPKSSA-----IK-LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       247 ~~~~~~~~~~~~~-----~k-l~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                      .............     .+ ...+ .............||..|+|||++.+..++.++|||||||++|+|++|..||.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~  234 (316)
T cd05574         156 EPPPVSKALRKGSRRSSVNSIPSET-FSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKG  234 (316)
T ss_pred             cccccccccccccccccccccchhh-hcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCC
Confidence            2211000000000     00 0000 000001112235789999999999988899999999999999999999999987


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+....+..+.......+                                                .....+..+.++|.
T Consensus       235 ~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~li~  266 (316)
T cd05574         235 SNRDETFSNILKKEVTFP------------------------------------------------GSPPVSSSARDLIR  266 (316)
T ss_pred             CchHHHHHHHhcCCccCC------------------------------------------------CccccCHHHHHHHH
Confidence            765544433321110000                                                01124678999999


Q ss_pred             HhcccCCCCCCC----HHHHhcCCCCCCC
Q 013941          401 GLLRYDPAERLK----AREALRHPFFTRD  425 (433)
Q Consensus       401 ~~L~~dP~~R~t----a~ell~hp~f~~~  425 (433)
                      +||+.||++|||    ++|+++||||++.
T Consensus       267 ~~l~~~p~~R~s~~~~~~~ll~~~~~~~~  295 (316)
T cd05574         267 KLLVKDPSKRLGSKRGAAEIKQHPFFRGV  295 (316)
T ss_pred             HHccCCHhHCCCchhhHHHHHcCchhhcC
Confidence            999999999999    9999999999874

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.4e-43  Score=334.99  Aligned_cols=287  Identities=25%  Similarity=0.370  Sum_probs=207.9

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +|++.+.||+|+||.||++.+..++..+|+|.+...  ......+.+|++++.+++|+++     +++++.+..++.+|+
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~l   76 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYI-----VGFYGAFYSDGEISI   76 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEeeCCEEEE
Confidence            699999999999999999999999999999998643  2334567889999999999888     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ||||+ +++|.+++.+..  .+++..+..++.||+.||.|||+ .+|+||||||+|||++.++.                
T Consensus        77 v~ey~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~----------------  138 (308)
T cd06615          77 CMEHMDGGSLDQVLKKAG--RIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGE----------------  138 (308)
T ss_pred             EeeccCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCc----------------
Confidence            99999 899999998764  68999999999999999999997 59999999999999976654                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL  327 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~  327 (433)
                                 ++|+|||++..... ......|+..|+|||++.+..++.++|||||||++|+|++|..||...+.....
T Consensus       139 -----------~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~  207 (308)
T cd06615         139 -----------IKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELE  207 (308)
T ss_pred             -----------EEEccCCCcccccccccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHH
Confidence                       56666665543322 123357889999999998888999999999999999999999999765533322


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP  407 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  407 (433)
                      ..+.......+...    ..       ........... ........................++.++.+||.+||..||
T Consensus       208 ~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P  275 (308)
T cd06615         208 AMFGRPVSEGEAKE----SH-------RPVSGHPPDSP-RPMAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNP  275 (308)
T ss_pred             HhhcCccccccccC----Cc-------ccccCCCCCcc-chhhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCCh
Confidence            22211110000000    00       00000000000 00000000000000000000011256789999999999999


Q ss_pred             CCCCCHHHHhcCCCCCCC
Q 013941          408 AERLKAREALRHPFFTRD  425 (433)
Q Consensus       408 ~~R~ta~ell~hp~f~~~  425 (433)
                      ++|||+.|+++||||.+.
T Consensus       276 ~~Rpt~~~ll~~~~~~~~  293 (308)
T cd06615         276 KERADLKELTKHPFIKRA  293 (308)
T ss_pred             hhCcCHHHHhcChhhhhc
Confidence            999999999999999875

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-43  Score=331.67  Aligned_cols=278  Identities=29%  Similarity=0.492  Sum_probs=209.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.+.||+|++|.||+|.+..+++.||+|.+....  .....+.+|+.+++.++|+++     +++++++.+.+..+
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~~   79 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANI-----VTLHDIIHTKKTLT   79 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcce-----eeEEEEEecCCeEE
Confidence            57999999999999999999999899999999986432  223456789999999998877     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||||+.++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+||+++.++.                 
T Consensus        80 lv~e~~~~~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~-----------------  141 (291)
T cd07844          80 LVFEYLDTDLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGE-----------------  141 (291)
T ss_pred             EEEecCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCC-----------------
Confidence            999999779999887654 36899999999999999999999999999999999999977664                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCC-hH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHE-NL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~-~~  324 (433)
                                ++|+|||.+......   .....++..|+|||++.+ ..++.++|||||||++|+|++|..||.+.. ..
T Consensus       142 ----------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~  211 (291)
T cd07844         142 ----------LKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVE  211 (291)
T ss_pred             ----------EEECccccccccCCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHH
Confidence                      566666655432211   112356788999999876 458899999999999999999999997665 44


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch--HHHHHHHHHh
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA--GDLIDLLQGL  402 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~li~~~  402 (433)
                      +.+..+.+..+.+....+............     .+..              . ............+  .++.++|.+|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------------~-~~~~~~~~~~~~~~~~~~~~li~~~  271 (291)
T cd07844         212 DQLHKIFRVLGTPTEETWPGVSSNPEFKPY-----SFPF--------------Y-PPRPLINHAPRLDRIPHGEELALKF  271 (291)
T ss_pred             HHHHHHHHhcCCCChhhhhhhhhccccccc-----cccc--------------c-CChhHHHhCcCCCCchhHHHHHHHH
Confidence            555556566555444332222111000000     0000              0 0000011111223  6889999999


Q ss_pred             cccCCCCCCCHHHHhcCCCC
Q 013941          403 LRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f  422 (433)
                      |+.||++|||+.|+++||||
T Consensus       272 L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         272 LQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             hccCcccccCHHHHhcCCCC
Confidence            99999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-43  Score=327.81  Aligned_cols=249  Identities=30%  Similarity=0.427  Sum_probs=202.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ++|++.+.||+|++|.||+|.+..+++.||+|.+....      .....+.+|+.+++++.|+++     +++++++..+
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~   76 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERI-----VQYYGCLRDD   76 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCe-----eeeEEEEccC
Confidence            46999999999999999999999999999999986432      123457789999999988877     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +..++||||+ +++|.+++....  .+++..++.++.||+.||.|||+.||+||||||+||+++.++.            
T Consensus        77 ~~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~------------  142 (263)
T cd06625          77 ETLSIFMEYMPGGSVKDQLKAYG--ALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGN------------  142 (263)
T ss_pred             CeEEEEEEECCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCC------------
Confidence            9999999999 899999998764  6899999999999999999999999999999999999976654            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                     ++|+|||.+......      .....|+..|+|||++.+..++.++|||||||++|+|++|+.||
T Consensus       143 ---------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~  207 (263)
T cd06625         143 ---------------VKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPW  207 (263)
T ss_pred             ---------------EEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCc
Confidence                           566666655432211      02246788999999999988999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ...+.......+.....                                                ........+..+.++
T Consensus       208 ~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~l  239 (263)
T cd06625         208 AEFEAMAAIFKIATQPT------------------------------------------------NPQLPSHVSPDARNF  239 (263)
T ss_pred             cccchHHHHHHHhccCC------------------------------------------------CCCCCccCCHHHHHH
Confidence            76544333222211000                                                001123456789999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCC
Q 013941          399 LQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      |.+||..+|++|||+.|+++||||
T Consensus       240 i~~~l~~~p~~Rpt~~~ll~~~~~  263 (263)
T cd06625         240 LRRTFVENAKKRPSAEELLRHFFV  263 (263)
T ss_pred             HHHHhhcCcccCCCHHHHhhCCCC
Confidence            999999999999999999999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=2.8e-43  Score=324.09  Aligned_cols=249  Identities=25%  Similarity=0.415  Sum_probs=201.7

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-CCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-RNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-~~~~  168 (433)
                      +|++.+.||+|++|.||++.+..+++.||+|.+....   ...+.+.+|+.++++++|+++     +++++.+.. ++.+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~   75 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNI-----VAYRESWEGEDGLL   75 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCe-----eeeeeeecCCCCEE
Confidence            4899999999999999999999999999999986432   334567789999999988877     888887764 5578


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++.......+++.+++.++.||+.||++||++||+||||||+||+++.++.               
T Consensus        76 ~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~---------------  140 (257)
T cd08223          76 YIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNI---------------  140 (257)
T ss_pred             EEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCc---------------
Confidence            9999999 899999998755456899999999999999999999999999999999999976664               


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                  ++|+|||++.....   ......|++.|+|||++.+..++.++|||||||++|+|++|+.||...+..
T Consensus       141 ------------~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~  208 (257)
T cd08223         141 ------------IKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMN  208 (257)
T ss_pred             ------------EEEecccceEEecccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH
Confidence                        55666665543321   122346888999999999988999999999999999999999999876554


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+...  ..+                                               ......+..+.++|.+||+
T Consensus       209 ~~~~~~~~~--~~~-----------------------------------------------~~~~~~~~~~~~li~~~l~  239 (257)
T cd08223         209 SLVYRIIEG--KLP-----------------------------------------------PMPKDYSPELGELIATMLS  239 (257)
T ss_pred             HHHHHHHhc--CCC-----------------------------------------------CCccccCHHHHHHHHHHhc
Confidence            433322211  000                                               0112346789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCC
Q 013941          405 YDPAERLKAREALRHPFF  422 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f  422 (433)
                      .||++|||+.++++||||
T Consensus       240 ~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         240 KRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             cCcccCCCHHHHhcCCCC
Confidence            999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.5e-43  Score=339.75  Aligned_cols=285  Identities=27%  Similarity=0.508  Sum_probs=222.6

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.++|++.+.||+|++|.||+|++..+++.||+|++...   ......+.+|+.+++++.|+++     +++.+++...
T Consensus        12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~   86 (343)
T cd07851          12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENV-----IGLLDVFTPA   86 (343)
T ss_pred             cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCH-----HHHHHHhhcc
Confidence            3567899999999999999999999999999999998642   2233556789999999998887     8888877665


Q ss_pred             Ce------EEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          166 NH------ICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       166 ~~------~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      +.      .++|+||++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+||+++.++        
T Consensus        87 ~~~~~~~~~~lv~e~~~~~L~~~~~~~---~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~--------  155 (343)
T cd07851          87 SSLEDFQDVYLVTHLMGADLNNIVKCQ---KLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDC--------  155 (343)
T ss_pred             ccccccccEEEEEecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC--------
Confidence            44      8999999999999998763   599999999999999999999999999999999999997655        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                         .++|+|||.+...........+|..|+|||.+.+. .++.++|||||||++|+|++|+.||
T Consensus       156 -------------------~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf  216 (343)
T cd07851         156 -------------------ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLF  216 (343)
T ss_pred             -------------------CEEEccccccccccccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCC
Confidence                               46777777766554444445788899999998764 6789999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhc-Cch-hhhhhccCCchHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL-RLP-NLIMQHVDHSAGDLI  396 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~  396 (433)
                      .+.+....+..+....+..++.+..........                     ...... ... ..........+..+.
T Consensus       217 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~s~~l~  275 (343)
T cd07851         217 PGSDHIDQLKRIMNLVGTPDEELLQKISSESAR---------------------NYIQSLPQMPKKDFKEVFSGANPLAI  275 (343)
T ss_pred             CCCChHHHHHHHHHhcCCCCHHHHhhccchhHH---------------------HHHHhccccCCCCHHHHhccCCHHHH
Confidence            988888888888777776665544332211100                     000000 000 000111123477899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      +||.+||+.||++|||+.||++||||.+.....
T Consensus       276 dli~~~l~~~P~~Rpt~~ell~h~~~~~~~~~~  308 (343)
T cd07851         276 DLLEKMLVLDPDKRITAAEALAHPYLAEYHDPE  308 (343)
T ss_pred             HHHHHhCCCChhhCCCHHHHhcCCCccccCCCc
Confidence            999999999999999999999999999765443

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.1e-43  Score=338.06  Aligned_cols=286  Identities=28%  Similarity=0.511  Sum_probs=218.5

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC-
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR-  165 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~-  165 (433)
                      +..+|.+.+.||+|+||+||+|++..+++.||||.+...   ........+|+.+++.++|+|+     +++++++... 
T Consensus         3 ~~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----~~~~~~~~~~~   77 (337)
T cd07858           3 VDTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENV-----IAIKDIMPPPH   77 (337)
T ss_pred             cccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCc-----cchHHheeccc
Confidence            456899999999999999999999999999999998642   2233456789999999998887     8888877643 


Q ss_pred             ----CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          166 ----NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       166 ----~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                          ...|+||||++++|.+++....  .+++..+..++.||+.||.|||++|++||||||+||+++.++          
T Consensus        78 ~~~~~~~~lv~e~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~----------  145 (337)
T cd07858          78 REAFNDVYIVYELMDTDLHQIIRSSQ--TLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANC----------  145 (337)
T ss_pred             ccccCcEEEEEeCCCCCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCC----------
Confidence                3589999999889999987654  799999999999999999999999999999999999997655          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                       .++|+|||++......   .....++..|+|||.+.+ ..++.++|||||||++|+|++|+.|
T Consensus       146 -----------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~p  208 (337)
T cd07858         146 -----------------DLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPL  208 (337)
T ss_pred             -----------------CEEECcCccccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCC
Confidence                             4566666665543222   123467889999999875 4688999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhh-hhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchh-hhhhccCCchHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRA-DRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN-LIMQHVDHSAGDL  395 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l  395 (433)
                      |.+.+.......+....+..+...+... ......+...                     ...... ......+..+.++
T Consensus       209 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~  267 (337)
T cd07858         209 FPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRS---------------------LPYTPRQSFARLFPHANPLA  267 (337)
T ss_pred             CCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHh---------------------cCcccccCHHHHcccCCHHH
Confidence            9988877777777777776654332110 0000000000                     000000 0011223567889


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCCCCccccC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCG  430 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~~  430 (433)
                      .+||.+||+.||++|||++|+++||||..-.....
T Consensus       268 ~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~~~  302 (337)
T cd07858         268 IDLLEKMLVFDPSKRITVEEALAHPYLASLHDPSD  302 (337)
T ss_pred             HHHHHHHhcCChhhccCHHHHHcCcchhhhcCccc
Confidence            99999999999999999999999999987544433

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=1.1e-43  Score=339.67  Aligned_cols=285  Identities=26%  Similarity=0.502  Sum_probs=219.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc---
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY---  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~---  164 (433)
                      ..+|++.+.||+|+||.||+|.+..+++.||+|++....   .....+.+|+.++++++|+++     +++++++..   
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~   78 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNI-----IAIRDILRPPGA   78 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCc-----cCHHHhccccCC
Confidence            467999999999999999999999999999999986532   234566789999999998887     888887753   


Q ss_pred             -CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 -RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 -~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                       ...+++||||++++|.+++....  .+++..++.++.||+.||.|||++||+||||||+||+++.++.           
T Consensus        79 ~~~~~~lv~e~~~~~l~~~~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~-----------  145 (334)
T cd07855          79 DFKDVYVVMDLMESDLHHIIHSDQ--PLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCE-----------  145 (334)
T ss_pred             CCceEEEEEehhhhhHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCc-----------
Confidence             45789999999879999987654  6999999999999999999999999999999999999987665           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC-------CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-------HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                      ++|+|||++......       .....|+..|+|||.+.+ ..++.++|||||||++|+|++|+
T Consensus       146 ----------------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~  209 (334)
T cd07855         146 ----------------LRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRR  209 (334)
T ss_pred             ----------------EEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCC
Confidence                            455555554332111       122478889999999866 45889999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhh-hhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRR-AEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      .||.+.+....+..+....+.+|.......... ...+...     ++.               .............+.+
T Consensus       210 ~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~---------------~~~~~~~~~~~~~~~~  269 (334)
T cd07855         210 QLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQN-----LPR---------------KQPVPWSKIFPKASPE  269 (334)
T ss_pred             CccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhh-----ccc---------------CCCCCHHHHcccCCHH
Confidence            999998888888888888888776654332211 1111000     000               0000001112345788


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          395 LIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      +.++|.+||+.||++|||+.+++.||||.+...+.
T Consensus       270 ~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~~~  304 (334)
T cd07855         270 ALDLLSQMLQFDPEERITVEQALQHPFLAQYHDPD  304 (334)
T ss_pred             HHHHHHHHccCChhhCcCHHHHHhChhhhhccCCc
Confidence            99999999999999999999999999998754443

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=9.8e-44  Score=340.60  Aligned_cols=247  Identities=23%  Similarity=0.346  Sum_probs=190.5

Q ss_pred             CCeEEeccccccccEEEEEEEe-----cCCCcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~-----~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ++|++.++||+|+||.||+|.+     ..+++.||||+++...  .....+.+|+.++..+ +|+||     +++++++.
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni-----v~~~~~~~   81 (338)
T cd05102           7 DRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNV-----VNLLGACT   81 (338)
T ss_pred             hHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcce-----eeEEeEec
Confidence            5799999999999999999975     2445789999987432  3345678899999999 67776     99999876


Q ss_pred             c-CCeEEEEEccC-CCCHHHHHHhcC------------------------------------------------------
Q 013941          164 Y-RNHICIVFEKL-GPSLYDFLRKNS------------------------------------------------------  187 (433)
Q Consensus       164 ~-~~~~~lv~e~~-~~~L~~~l~~~~------------------------------------------------------  187 (433)
                      . .+.+++||||+ +|+|.+++....                                                      
T Consensus        82 ~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (338)
T cd05102          82 KPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQ  161 (338)
T ss_pred             CCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccch
Confidence            5 45689999999 999999997532                                                      


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCee
Q 013941          188 ------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK  261 (433)
Q Consensus       188 ------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~k  261 (433)
                            ...+++..+..++.||+.||+|||++||+||||||+|||++.++                           .+|
T Consensus       162 ~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~---------------------------~~k  214 (338)
T cd05102         162 ETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENN---------------------------VVK  214 (338)
T ss_pred             hccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCC---------------------------cEE
Confidence                  12477888999999999999999999999999999999997655                           456


Q ss_pred             eecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhc
Q 013941          262 LIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMERVLG  335 (433)
Q Consensus       262 l~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~  335 (433)
                      |+|||++......     .....++..|+|||++.+..++.++|||||||++|||++ |..||.+............. +
T Consensus       215 l~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~-~  293 (338)
T cd05102         215 ICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKD-G  293 (338)
T ss_pred             EeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHhc-C
Confidence            6666665432211     112345678999999999899999999999999999997 99999875432222111100 0


Q ss_pred             CCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHH
Q 013941          336 PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKARE  415 (433)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~e  415 (433)
                      ..                                               .......+.++.+||.+||+.||++|||+.|
T Consensus       294 ~~-----------------------------------------------~~~~~~~~~~l~~li~~cl~~dp~~RPs~~e  326 (338)
T cd05102         294 TR-----------------------------------------------MRAPENATPEIYRIMLACWQGDPKERPTFSA  326 (338)
T ss_pred             CC-----------------------------------------------CCCCCCCCHHHHHHHHHHccCChhhCcCHHH
Confidence            00                                               0011234678999999999999999999999


Q ss_pred             Hhc
Q 013941          416 ALR  418 (433)
Q Consensus       416 ll~  418 (433)
                      +++
T Consensus       327 l~~  329 (338)
T cd05102         327 LVE  329 (338)
T ss_pred             HHH
Confidence            975

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=4.1e-43  Score=328.19  Aligned_cols=278  Identities=31%  Similarity=0.589  Sum_probs=209.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+.+++++.|+|+     +++++++...+..
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----~~~~~~~~~~~~~   75 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNL-----VNLIEVFRRKRKL   75 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCE-----eeeeeEEeeCCEE
Confidence            47999999999999999999999999999999886432   233557789999999988777     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||+ ++.|..++....  .+++..++.++.||+.||+|||++||+||||||+||+++.++                
T Consensus        76 ~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~----------------  137 (286)
T cd07847          76 HLVFEYCDHTVLNELEKNPR--GVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQG----------------  137 (286)
T ss_pred             EEEEeccCccHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCC----------------
Confidence            9999999 666666655433  689999999999999999999999999999999999997665                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                 .++|+|||++.......   ....++..|+|||++.+ ..++.++|||||||++|+|++|..||.+...
T Consensus       138 -----------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~  206 (286)
T cd07847         138 -----------QIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSD  206 (286)
T ss_pred             -----------cEEECccccceecCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCCh
Confidence                       45666666655433221   22357889999999876 4578999999999999999999999998887


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+....+....+............  ..+. .......+..  .              ..........+..+.+||.+||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~li~~~l  267 (286)
T cd07847         207 VDQLYLIRKTLGDLIPRHQQIFST--NQFF-KGLSIPEPET--R--------------EPLESKFPNISSPALSFLKGCL  267 (286)
T ss_pred             HHHHHHHHHHhCCCChHHhhhccc--cccc-ccccCCCccc--c--------------cCHHHHhccCCHHHHHHHHHHh
Confidence            777776666655443211100000  0000 0000000000  0              0000112345778999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCC
Q 013941          404 RYDPAERLKAREALRHPFF  422 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f  422 (433)
                      +.||++|||+.|++.||||
T Consensus       268 ~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         268 QMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             cCCccccCCHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=4.2e-43  Score=322.65  Aligned_cols=249  Identities=26%  Similarity=0.415  Sum_probs=205.1

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .|.+.+.||+|++|.||+|.+..+++.|++|.+...   ......+.+|+.+++.++|+++     +++++++...+..|
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~   75 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYI-----IRYYESFLDKGKLN   75 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCe-----ehheeeeccCCEEE
Confidence            388999999999999999999999999999998642   3445677889999999988887     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++.......+++..+..++.||+.||.|||++||+|+||||+||+++.++.                
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~----------------  139 (256)
T cd08529          76 IVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDN----------------  139 (256)
T ss_pred             EEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCC----------------
Confidence            999999 999999998764457999999999999999999999999999999999999977664                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                 ++|+|||++.......   ....|+..|+|||++.+..++.++|||||||++|+|++|+.||...+...
T Consensus       140 -----------~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~  208 (256)
T cd08529         140 -----------VKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQGA  208 (256)
T ss_pred             -----------EEEcccccceeccCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                       5666666554332211   22467889999999999889999999999999999999999998776544


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+.  ..+                                               .....++.++.++|.+||+.
T Consensus       209 ~~~~~~~~--~~~-----------------------------------------------~~~~~~~~~~~~~i~~~l~~  239 (256)
T cd08529         209 LILKIIRG--VFP-----------------------------------------------PVSQMYSQQLAQLIDQCLTK  239 (256)
T ss_pred             HHHHHHcC--CCC-----------------------------------------------CCccccCHHHHHHHHHHccC
Confidence            33332211  000                                               00113466899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      +|++||++.++++|||+
T Consensus       240 ~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         240 DYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             CcccCcCHHHHhhCCCC
Confidence            99999999999999996

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=1.5e-43  Score=330.58  Aligned_cols=252  Identities=25%  Similarity=0.454  Sum_probs=201.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHH-hCCCCCcceeEecceec------
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFD------  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~------  163 (433)
                      .+.|++.+.||.|+||.||+|.+..+++.||+|++.........+..|+.+++++. |+++     +++++++.      
T Consensus        15 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i-----~~~~~~~~~~~~~~   89 (282)
T cd06636          15 AGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNI-----ATYYGAFIKKSPPG   89 (282)
T ss_pred             hhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcE-----EEEeeehhcccccC
Confidence            35799999999999999999999999999999998766555567788999999884 6655     99999884      


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      ..+.+|+||||+ +++|.+++.......+++..+..++.||+.||.|||++||+|+||||+||+++.++           
T Consensus        90 ~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~-----------  158 (282)
T cd06636          90 HDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENA-----------  158 (282)
T ss_pred             CCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC-----------
Confidence            356899999999 88999999875555689999999999999999999999999999999999997655           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhh-----CCCCCccchHHHHHHHHHHHHhC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwSlG~il~el~~g  314 (433)
                                      .++|+|||.+.....   ......|+..|+|||++.     +..++.++|||||||++|+|++|
T Consensus       159 ----------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g  222 (282)
T cd06636         159 ----------------EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEG  222 (282)
T ss_pred             ----------------CEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhC
Confidence                            467777776654321   123357899999999986     34578899999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      ..||...........+.+..   +.                                          .   .....++.+
T Consensus       223 ~~p~~~~~~~~~~~~~~~~~---~~------------------------------------------~---~~~~~~~~~  254 (282)
T cd06636         223 APPLCDMHPMRALFLIPRNP---PP------------------------------------------K---LKSKKWSKK  254 (282)
T ss_pred             CCCccccCHHhhhhhHhhCC---CC------------------------------------------C---CcccccCHH
Confidence            99997654433222211100   00                                          0   001234678


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          395 LIDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      +.+||.+||+.||.+|||+.|+++||||
T Consensus       255 ~~~li~~cl~~~p~~Rp~~~ell~~~~~  282 (282)
T cd06636         255 FIDFIEGCLVKNYLSRPSTEQLLKHPFI  282 (282)
T ss_pred             HHHHHHHHhCCChhhCcCHHHHhcCCCC
Confidence            9999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.6e-43  Score=337.02  Aligned_cols=282  Identities=27%  Similarity=0.509  Sum_probs=220.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.++|++++.||+|+||.||+|.+..+++.||||++...   ......+.+|+.+++.+.|+++     +++++++..+
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~   86 (343)
T cd07880          12 EVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENV-----IGLLDVFTPD   86 (343)
T ss_pred             ccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCc-----cceeeeecCC
Confidence            4567899999999999999999999999999999998542   2234567789999999999887     8888888654


Q ss_pred             C------eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          166 N------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       166 ~------~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      .      .+++||||++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+||+++.++        
T Consensus        87 ~~~~~~~~~~lv~e~~~~~l~~~~~~~---~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~--------  155 (343)
T cd07880          87 LSLDRFHDFYLVMPFMGTDLGKLMKHE---KLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDC--------  155 (343)
T ss_pred             ccccccceEEEEEecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC--------
Confidence            3      46999999988999888653   599999999999999999999999999999999999996554        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                         .++|+|||++...........++..|+|||++.+ ..++.++|+|||||++|+|++|..||
T Consensus       156 -------------------~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf  216 (343)
T cd07880         156 -------------------ELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLF  216 (343)
T ss_pred             -------------------CEEEeecccccccccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                               5677788877665544444577899999999876 35889999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhh-hhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRA-EKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      .+.+.......+....+..+..+........ ..+..                  .... . ............+..+.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~-~-~~~~~~~~~~~~~~~~~~  276 (343)
T cd07880         217 KGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVK------------------KLPR-F-RKKDFRSLLPNANPLAVN  276 (343)
T ss_pred             CCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHH------------------hccc-c-CcchHHHhccCCChHHHH
Confidence            9888777777777766666655433321110 00000                  0000 0 000111223456778999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +|.+||+.||++|||+.++++||||+..
T Consensus       277 li~~~l~~dP~~R~t~~~~l~~~~~~~~  304 (343)
T cd07880         277 VLEKMLVLDAESRITAAEALAHPYFEEF  304 (343)
T ss_pred             HHHHHcCCChhhCCCHHHHhcCccHhhh
Confidence            9999999999999999999999999875

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.6e-46  Score=317.89  Aligned_cols=289  Identities=26%  Similarity=0.466  Sum_probs=222.2

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEecc---chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc---
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY---  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~---  164 (433)
                      .+.|+-..+||+|.||.||+|+.+.+|+.||+|++--   .........+|+.+|..+.|+|+     +.+++.+..   
T Consensus        16 ~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv-----~nliEic~tk~T   90 (376)
T KOG0669|consen   16 VSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENV-----VNLIEICRTKAT   90 (376)
T ss_pred             chHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhH-----HHHHHHHhhccC
Confidence            3568888999999999999999999999999987643   23445678899999999999988     666666542   


Q ss_pred             -----CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          165 -----RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       165 -----~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                           ...+|+||.+|..+|..++.... .+++..+++.++.+++.||.|+|.+.|+|||+|++|+||+.+|.+      
T Consensus        91 p~~r~r~t~ylVf~~cehDLaGlLsn~~-vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgil------  163 (376)
T KOG0669|consen   91 PTNRDRATFYLVFDFCEHDLAGLLSNRK-VRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGIL------  163 (376)
T ss_pred             CcccccceeeeeHHHhhhhHHHHhcCcc-ccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceE------
Confidence                 34699999999999999997653 479999999999999999999999999999999999999887754      


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccC-------CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHH
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-------DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-------~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el  311 (433)
                                           ||+|||+++....       ..+..+-|.+|++||.+.|. .|+++.|||..|||+.||
T Consensus       164 ---------------------klADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeM  222 (376)
T KOG0669|consen  164 ---------------------KLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEM  222 (376)
T ss_pred             ---------------------EeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHH
Confidence                                 5555555532221       12335679999999999886 599999999999999999


Q ss_pred             HhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       312 ~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      ++|.+.|++.++.+++..|..++|.+..+.+..++...-.  ..-.....+.+..  ..+....         ...  -.
T Consensus       223 wtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~--~sie~ePl~~~~~--rkv~n~~---------kp~--~k  287 (376)
T KOG0669|consen  223 WTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLY--QSIELEPLPKGQK--RKVKNRL---------KPY--VK  287 (376)
T ss_pred             HccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHH--HhccCCCCCcchh--hhhhhhc---------ccc--cC
Confidence            9999999999999999999999999887665554321110  0000000111110  0000000         000  11


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      +++..+|+.+||..||.+|++++++++|.||..+.-
T Consensus       288 d~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp~  323 (376)
T KOG0669|consen  288 DDEALDLLEKLLKLDPTKRIDADQALNHDFFWKDPM  323 (376)
T ss_pred             ChhHHHHHHHHhccCcccCcchHhhhchhhhhcCCc
Confidence            457889999999999999999999999999998743

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-44  Score=346.69  Aligned_cols=251  Identities=25%  Similarity=0.430  Sum_probs=208.9

Q ss_pred             cccccccEEEEEEEecCCCcEEEEEEec-cchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-C
Q 013941           99 KMGEGTFGQVVECFDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-G  176 (433)
Q Consensus        99 ~lg~G~~g~V~~~~~~~~~~~vavK~~~-~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~  176 (433)
                      +||+|.||+||.|++..+...+|||-+. +.....+.+..|+.+.++|+|.||     |++++.+..++++-|.||-+ |
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNI-----VrYLGs~senGf~kIFMEqVPG  656 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNI-----VRYLGSVSENGFFKIFMEQVPG  656 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhH-----HHHhhccCCCCeEEEEeecCCC
Confidence            7999999999999999999999999886 444566778889999999999998     99999999999999999999 9


Q ss_pred             CCHHHHHHhcCCCCC--CHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          177 PSLYDFLRKNSYRSF--PIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       177 ~~L~~~l~~~~~~~l--~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                      |+|.++++..- +.+  .+.++..+.+||++||.|||++.|||||||-+||||+.                         
T Consensus       657 GSLSsLLrskW-GPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNT-------------------------  710 (1226)
T KOG4279|consen  657 GSLSSLLRSKW-GPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNT-------------------------  710 (1226)
T ss_pred             CcHHHHHHhcc-CCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEee-------------------------
Confidence            99999998654 356  88999999999999999999999999999999999953                         


Q ss_pred             CCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCC--CCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM  329 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~  329 (433)
                       -.+.+||+|||.++....   -..++.||..|||||++..+  +|+.++|||||||++.||.||++||..-...+. ++
T Consensus       711 -ySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqA-AM  788 (1226)
T KOG4279|consen  711 -YSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQA-AM  788 (1226)
T ss_pred             -ccceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhH-hh
Confidence             234678888888765432   22347899999999999865  589999999999999999999999965433221 11


Q ss_pred             HH----HHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          330 ME----RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       330 i~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ..    +.-.++                                                  +.+.+.+++.||.+|+..
T Consensus       789 FkVGmyKvHP~i--------------------------------------------------Peelsaeak~FilrcFep  818 (1226)
T KOG4279|consen  789 FKVGMYKVHPPI--------------------------------------------------PEELSAEAKNFILRCFEP  818 (1226)
T ss_pred             hhhcceecCCCC--------------------------------------------------cHHHHHHHHHHHHHHcCC
Confidence            11    111222                                                  234577899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCccccCCC
Q 013941          406 DPAERLKAREALRHPFFTRDVRRCGFP  432 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~~~~~~  432 (433)
                      ||.+||+|.++|..||++...++...+
T Consensus       819 d~~~R~sA~~LL~DpFlq~~~kk~r~~  845 (1226)
T KOG4279|consen  819 DPCDRPSAKDLLQDPFLQHNNKKPRPK  845 (1226)
T ss_pred             CcccCccHHHhccCcccccCCCCCCCC
Confidence            999999999999999999886655443

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=2.6e-43  Score=331.30  Aligned_cols=253  Identities=27%  Similarity=0.421  Sum_probs=205.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ..+|++.+.||+|+||.||+|.+..+++.||+|.+.... ...+.+.+|+.+++.+.|+++     +++++.+..+...|
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v-----~~~~~~~~~~~~~~   93 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNI-----VNYLDSYLVGDELW   93 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCE-----eeEEEEEEeCCEEE
Confidence            358999999999999999999999999999999887533 334567789999999988776     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++...   .+++..+..++.||+.||.|||++||+||||||+|||++.++                 
T Consensus        94 lv~e~~~~~~L~~~~~~~---~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~-----------------  153 (296)
T cd06654          94 VVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDG-----------------  153 (296)
T ss_pred             EeecccCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCC-----------------
Confidence            999999 99999998654   589999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .++|+|||.+......   .....|+..|+|||.+.+..++.++|||||||++|+|++|..||.......
T Consensus       154 ----------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~  223 (296)
T cd06654         154 ----------SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR  223 (296)
T ss_pred             ----------CEEECccccchhccccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                      4566666665432221   123478899999999998889999999999999999999999997765433


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+...  ..+                                             .......++..+.+||.+||..
T Consensus       224 ~~~~~~~~--~~~---------------------------------------------~~~~~~~~~~~l~~li~~~l~~  256 (296)
T cd06654         224 ALYLIATN--GTP---------------------------------------------ELQNPEKLSAIFRDFLNRCLDM  256 (296)
T ss_pred             hHHHHhcC--CCC---------------------------------------------CCCCccccCHHHHHHHHHHCcC
Confidence            32221110  000                                             0011123466899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCC
Q 013941          406 DPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||++|||+.++++||||...
T Consensus       257 ~p~~Rpt~~eil~~~~~~~~  276 (296)
T cd06654         257 DVEKRGSAKELLQHQFLKIA  276 (296)
T ss_pred             CcccCcCHHHHhhChhhhcc
Confidence            99999999999999999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=1.7e-43  Score=332.15  Aligned_cols=279  Identities=29%  Similarity=0.490  Sum_probs=212.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC--C
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR--N  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~--~  166 (433)
                      ++|++.+.||+|+||.||+|.+..+++.+|+|.++...   .....+.+|+.++.++.|+|+     +++++++...  +
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-----~~~~~~~~~~~~~   79 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNI-----VTVKEVVVGSNLD   79 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCE-----EEEEEEEEecCCC
Confidence            46999999999999999999999999999999987432   223345689999999988877     9999988776  8


Q ss_pred             eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          167 HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       167 ~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ..|+||||++++|.+++.... ..+++..++.++.||+.||+|||++||+|+||||+||+++.++               
T Consensus        80 ~~~lv~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~---------------  143 (293)
T cd07843          80 KIYMVMEYVEHDLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRG---------------  143 (293)
T ss_pred             cEEEEehhcCcCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCC---------------
Confidence            999999999779999987654 3689999999999999999999999999999999999997665               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                  .++|+|||.+......   .....++..|+|||.+.+. .++.++||||||+++|+|++|..||....
T Consensus       144 ------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~  211 (293)
T cd07843         144 ------------ILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKS  211 (293)
T ss_pred             ------------cEEEeecCceeeccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                        4566666665543322   1224578899999998765 46899999999999999999999999888


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC-chHHHHHHHHH
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH-SAGDLIDLLQG  401 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~li~~  401 (433)
                      ..+....+....+.++...+.......     ......+..              ............. .+..+.+||.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~li~~  272 (293)
T cd07843         212 EIDQLNKIFKLLGTPTEKIWPGFSELP-----GAKKKTFTK--------------YPYNQLRKKFPALSLSDNGFDLLNR  272 (293)
T ss_pred             hHHHHHHHHHHhCCCchHHHHHhhccc-----hhccccccc--------------ccchhhhccccccCCChHHHHHHHH
Confidence            887777777766655443322211000     000000000              0000011111111 47789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ||+.||++|||+.|+++||||
T Consensus       273 ~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         273 LLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             HhccCccccCCHHHHhcCCCC
Confidence            999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=6.1e-43  Score=328.60  Aligned_cols=277  Identities=34%  Similarity=0.550  Sum_probs=208.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHh-CCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLAR-HDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~-~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|.+..+++.||+|+++...   .....+.+|+.+++.+.| +++     +++++++...+.
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i-----~~~~~~~~~~~~   75 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYI-----VRLLDVEHVEEK   75 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCc-----cceeeeEeecCC
Confidence            36999999999999999999999999999999886432   223567789999999965 565     899888876555


Q ss_pred             -----EEEEEccCCCCHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee-CCcccccCc
Q 013941          168 -----ICIVFEKLGPSLYDFLRKNS---YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS-AEYVKVPDY  238 (433)
Q Consensus       168 -----~~lv~e~~~~~L~~~l~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~-~~~~~l~d~  238 (433)
                           .|+||||+.++|.+++....   ...+++..++.++.||+.||.|||++||+||||||+||+++. ++       
T Consensus        76 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~-------  148 (295)
T cd07837          76 NGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKG-------  148 (295)
T ss_pred             CCCceEEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCC-------
Confidence                 89999999778999886542   235899999999999999999999999999999999999975 33       


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g  314 (433)
                                          .++|+|||.+.......   ....+++.|+|||++.+. .++.++|||||||++|+|++|
T Consensus       149 --------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g  208 (295)
T cd07837         149 --------------------LLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRK  208 (295)
T ss_pred             --------------------eEEEeecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcC
Confidence                                56777777765432211   123568889999988764 578999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcC-chhhhhhccCCchH
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR-LPNLIMQHVDHSAG  393 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  393 (433)
                      ..||.+.+.......+.+..+..+....                   +.......    ...... .+.......+..+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  265 (295)
T cd07837         209 QPLFPGDSELQQLLHIFKLLGTPTEQVW-------------------PGVSKLRD----WHEFPQWKPQDLSRAVPDLSP  265 (295)
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCChhhC-------------------cchhhccc----hhhcCcccchhHHHhccccCH
Confidence            9999988877776666655543332211                   10000000    000000 00111112235678


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      ++.+||.+||+.||++|||+.|++.||||+
T Consensus       266 ~~~~~i~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         266 EGLDLLQKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             HHHHHHHHHccCChhhcCCHHHHhcCCCcC
Confidence            899999999999999999999999999995

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=7.2e-43  Score=331.37  Aligned_cols=287  Identities=29%  Similarity=0.502  Sum_probs=209.2

Q ss_pred             CeEEeccccccccEEEEEEEecC--CCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC-
Q 013941           93 RYRILSKMGEGTFGQVVECFDNE--KKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR-  165 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~--~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~-  165 (433)
                      +|++.++||+|+||.||+|.+..  +++.||+|.+....    ...+...+|+.++..++|+++     +++++++.+. 
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~   75 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENV-----VSLVEVFLEHA   75 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCc-----cceEEEEeCCC
Confidence            58999999999999999999988  89999999987532    334567789999999999887     9999999887 


Q ss_pred             -CeEEEEEccCCCCHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          166 -NHICIVFEKLGPSLYDFLRKNS---YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       166 -~~~~lv~e~~~~~L~~~l~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                       +.+++||||++++|.+++....   ...+++..++.++.||+.||+|||++||+||||||+||+++.++          
T Consensus        76 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~----------  145 (316)
T cd07842          76 DKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEG----------  145 (316)
T ss_pred             CceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCC----------
Confidence             8899999999878888775332   13689999999999999999999999999999999999997732          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g  314 (433)
                                   +.+..+||+|||++.......      ....+|..|+|||++.+. .++.++|||||||++|+|++|
T Consensus       146 -------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~  212 (316)
T cd07842         146 -------------PERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTL  212 (316)
T ss_pred             -------------CccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhc
Confidence                         124457777777765433221      234678899999998764 578999999999999999999


Q ss_pred             CCCCCCCChH---------HHHHHHHHHhcCCChhhHHhhhhhhhhh--hcCCccccCCCCCCchhhHHHHHHhcCchhh
Q 013941          315 EALFQTHENL---------EHLAMMERVLGPLPHHMVIRADRRAEKY--FRRGARLDWPDGATSRDSMRAVWKLLRLPNL  383 (433)
Q Consensus       315 ~~pf~~~~~~---------~~~~~i~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (433)
                      +.||.+....         ..+..+...++.................  ........++.     .....          
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----------  277 (316)
T cd07842         213 EPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPS-----NSLAK----------  277 (316)
T ss_pred             CCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCC-----ccHHH----------
Confidence            9999765432         2334444444443332221111100000  00000000000     00000          


Q ss_pred             hhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       384 ~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ........+..+.++|.+||+.||++|||+.|+++||||
T Consensus       278 ~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         278 WMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             HHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence            001112557789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-45  Score=366.53  Aligned_cols=253  Identities=28%  Similarity=0.441  Sum_probs=208.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +.|.|++.||+|+||.|.+++++.+++.||+|++++..    .....+..|-.+|..-..+-|     +.++-.|++.++
T Consensus        75 ~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wi-----v~LhyAFQD~~~  149 (1317)
T KOG0612|consen   75 EDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWI-----VQLHYAFQDERY  149 (1317)
T ss_pred             HhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHH-----HHHHHHhcCccc
Confidence            57999999999999999999999999999999998632    233456677778766555544     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||| ||+|..++.+..  .+++..+++|+..|+.||.-||+.|+|||||||+|||++..|++             
T Consensus       150 LYlVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHi-------------  214 (1317)
T KOG0612|consen  150 LYLVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHI-------------  214 (1317)
T ss_pred             eEEEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcE-------------
Confidence            99999999 999999999876  79999999999999999999999999999999999999887765             


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhC-----CCCCccchHHHHHHHHHHHHhCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILG-----LGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                    ||+|||.+......    ....+|||.|.|||++..     +.|+..+|+||+||++|||+.|..|
T Consensus       215 --------------kLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TP  280 (1317)
T KOG0612|consen  215 --------------KLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETP  280 (1317)
T ss_pred             --------------eeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCc
Confidence                          55555554433322    233599999999999963     4589999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...+-.+.+..|++..                      ..+.+|+                        ...+|.++++
T Consensus       281 FYadslveTY~KIm~hk----------------------~~l~FP~------------------------~~~VSeeakd  314 (1317)
T KOG0612|consen  281 FYADSLVETYGKIMNHK----------------------ESLSFPD------------------------ETDVSEEAKD  314 (1317)
T ss_pred             chHHHHHHHHHHHhchh----------------------hhcCCCc------------------------ccccCHHHHH
Confidence            99887777777666531                      1112221                        1236889999


Q ss_pred             HHHHhcccCCCCCCC---HHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLK---AREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~t---a~ell~hp~f~~~  425 (433)
                      ||.++|. +|+.|+.   ++++..||||.+.
T Consensus       315 LI~~ll~-~~e~RLgrngiedik~HpFF~g~  344 (1317)
T KOG0612|consen  315 LIEALLC-DREVRLGRNGIEDIKNHPFFEGI  344 (1317)
T ss_pred             HHHHHhc-ChhhhcccccHHHHHhCccccCC
Confidence            9999777 7889998   9999999999974

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=7.8e-43  Score=332.56  Aligned_cols=289  Identities=28%  Similarity=0.493  Sum_probs=225.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-  164 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-  164 (433)
                      .+.++|++.+.||.|+||.||+|.+..+++.||+|++.+.   ......+.+|+.+++.+.|+++     +++.+++.. 
T Consensus         7 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~~~~~   81 (328)
T cd07856           7 EITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENI-----ISLSDIFISP   81 (328)
T ss_pred             ccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCe-----eeEeeeEecC
Confidence            3567899999999999999999999999999999987542   2234567789999999998877     999998865 


Q ss_pred             CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          165 RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       165 ~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .+..|+||||++++|.+++...   .+++..+..++.||+.||+|||++||+||||||+||+++.++             
T Consensus        82 ~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~-------------  145 (328)
T cd07856          82 LEDIYFVTELLGTDLHRLLTSR---PLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENC-------------  145 (328)
T ss_pred             CCcEEEEeehhccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCC-------------
Confidence            5689999999988999888653   588999999999999999999999999999999999996554             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                    .++|+|||.+...........++..|+|||.+.+ ..++.++|||||||++|+|++|..||.+...
T Consensus       146 --------------~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~  211 (328)
T cd07856         146 --------------DLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDH  211 (328)
T ss_pred             --------------CEEeCccccccccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence                          4677777776654444344577889999998766 5689999999999999999999999998888


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhh-hhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRR-AEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ......+.+.++.+|..+....... ...++....                    ..............+.++.++|.+|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~li~~~  271 (328)
T cd07856         212 VNQFSIITDLLGTPPDDVINTICSENTLRFVQSLP--------------------KREPVPFSEKFKNADPSAIDLLEKM  271 (328)
T ss_pred             HHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhcc--------------------ccCCCcHHHHcCCCCHHHHHHHHHH
Confidence            8888888888888877664432111 011100000                    0000011112234577899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCccccCCC
Q 013941          403 LRYDPAERLKAREALRHPFFTRDVRRCGFP  432 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~~~~~~~  432 (433)
                      |+.+|++|||+++++.||||.....+..-|
T Consensus       272 l~~~P~~R~t~~ell~~~~~~~~~~~~~~~  301 (328)
T cd07856         272 LVFDPQKRISAAEALAHPYLAPYHDPTDEP  301 (328)
T ss_pred             cCCChhhCCCHHHHhcCCccccccCCcccc
Confidence            999999999999999999998765554433

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=5.5e-43  Score=331.20  Aligned_cols=280  Identities=28%  Similarity=0.518  Sum_probs=210.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC---
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR---  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~---  165 (433)
                      ++|++.++||+|+||.||+|.+..+++.||||.+....   .......+|+.+++++.|+++     +++++++...   
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~~   86 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENV-----VNLIEICRTKATP   86 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCc-----cceEEEEeccccc
Confidence            46999999999999999999999999999999886432   223345679999999999888     8888876543   


Q ss_pred             -----CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          166 -----NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       166 -----~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                           ...++||||++++|.+++.... ..+++..++.++.||+.||+|||++||+|+||||+||+++.++.+       
T Consensus        87 ~~~~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~-------  158 (310)
T cd07865          87 YNRYKGSFYLVFEFCEHDLAGLLSNKN-VKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGIL-------  158 (310)
T ss_pred             ccCCCceEEEEEcCCCcCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcE-------
Confidence                 3569999999889998887543 368999999999999999999999999999999999999776655       


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCC-------CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHH
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-------HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~  312 (433)
                                          +|+|||.+......       .....++..|+|||++.+. .++.++||||||+++|+|+
T Consensus       159 --------------------kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~  218 (310)
T cd07865         159 --------------------KLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMW  218 (310)
T ss_pred             --------------------EECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHH
Confidence                                55555544322111       1123578889999998765 4789999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      +|..||.+.+.......+....+.+|..+.........  +.   ....+....  ....           ..-.....+
T Consensus       219 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~--~~~~-----------~~l~~~~~~  280 (310)
T cd07865         219 TRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLEL--FK---KMELPQGQK--RKVK-----------ERLKPYVKD  280 (310)
T ss_pred             hCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhh--hh---hccCCCccc--hhhH-----------HhcccccCC
Confidence            99999999888888888888888777654332211000  00   000000000  0000           000001135


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ..+.+||.+||..||++|||++|+++||||
T Consensus       281 ~~~~dli~~~l~~~P~~R~t~~e~l~h~~f  310 (310)
T cd07865         281 PHALDLIDKLLVLDPAKRIDADTALNHDFF  310 (310)
T ss_pred             HHHHHHHHHHhcCChhhccCHHHHhcCCCC
Confidence            578899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=3.8e-43  Score=330.11  Aligned_cols=253  Identities=28%  Similarity=0.434  Sum_probs=207.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .+|++.+.||.|+||.||+|.+..+++.||+|.+.... ...+.+.+|+.+++.++|+++     +++++++...+.+|+
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~~~l   93 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNI-----VNFLDSFLVGDELFV   93 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCce-----eeeeeeEecCceEEE
Confidence            57999999999999999999999999999999886432 334567789999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      |+||+ +++|.+++...   .+++..+..++.||+.||.|||++||+||||||+||+++.++.                 
T Consensus        94 v~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~-----------------  153 (296)
T cd06655          94 VMEYLAGGSLTDVVTET---CMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGS-----------------  153 (296)
T ss_pred             EEEecCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCC-----------------
Confidence            99999 99999988754   5899999999999999999999999999999999999976664                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                ++|+|||++......   .....|+..|+|||.+.+..++.++|||||||++|+|++|..||...+....
T Consensus       154 ----------~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~  223 (296)
T cd06655         154 ----------VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA  223 (296)
T ss_pred             ----------EEEccCccchhcccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                      566666655432221   1234688899999999988899999999999999999999999987765444


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+....  .+                                             .......++..+.+||.+||..|
T Consensus       224 ~~~~~~~~--~~---------------------------------------------~~~~~~~~~~~~~~li~~~l~~d  256 (296)
T cd06655         224 LYLIATNG--TP---------------------------------------------ELQNPEKLSPIFRDFLNRCLEMD  256 (296)
T ss_pred             HHHHHhcC--Cc---------------------------------------------ccCCcccCCHHHHHHHHHHhhcC
Confidence            33222110  00                                             00112345678999999999999


Q ss_pred             CCCCCCHHHHhcCCCCCCCc
Q 013941          407 PAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       407 P~~R~ta~ell~hp~f~~~~  426 (433)
                      |++|||+.++++||||+...
T Consensus       257 p~~Rpt~~~il~~~~~~~~~  276 (296)
T cd06655         257 VEKRGSAKELLQHPFLKLAK  276 (296)
T ss_pred             hhhCCCHHHHhhChHhhhcc
Confidence            99999999999999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=7.1e-43  Score=325.91  Aligned_cols=274  Identities=33%  Similarity=0.567  Sum_probs=211.2

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceeccC--CeE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYR--NHI  168 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~--~~~  168 (433)
                      |+++++||+|+||.||+|.+..+++.||+|+++...  .......+|+.++.++. |+|+     +++++++.+.  +.+
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i-----~~~~~~~~~~~~~~~   75 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNI-----LRLIEVLFDRKTGRL   75 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCc-----cceEEEEecCCCCcE
Confidence            678999999999999999999999999999987532  22233456888888885 6666     9999999887  899


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++||||+.++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+||+++. +                 
T Consensus        76 ~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~-----------------  136 (282)
T cd07831          76 ALVFELMDMNLYELIKGRK-RPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-D-----------------  136 (282)
T ss_pred             EEEEecCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-C-----------------
Confidence            9999999779988887643 36899999999999999999999999999999999999965 4                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .++|+|||.+.......  ....++..|+|||++.. ..++.++|||||||++|||++|..||.+.+..+
T Consensus       137 ----------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~  206 (282)
T cd07831         137 ----------ILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELD  206 (282)
T ss_pred             ----------CeEEEecccccccccCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHH
Confidence                      46777777665443222  22467889999998754 457899999999999999999999999988888


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+....+..+..+.......      ......++....               ..........+.++.+||.+||+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~li~~~l~~  265 (282)
T cd07831         207 QIAKIHDVLGTPDAEVLKKFRKS------RHMNYNFPSKKG---------------TGLRKLLPNASAEGLDLLKKLLAY  265 (282)
T ss_pred             HHHHHHHHcCCCCHHHHHhhccc------ccccccCccccc---------------ccHHHHcccccHHHHHHHHHHhcc
Confidence            88888887777766542211100      000111111000               000111234578999999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      ||++|||++++++||||
T Consensus       266 ~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         266 DPDERITAKQALRHPYF  282 (282)
T ss_pred             CcccccCHHHHhhCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-43  Score=329.54  Aligned_cols=255  Identities=29%  Similarity=0.483  Sum_probs=205.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ++|++.+.||.|+||.||+|.+..+++.||+|++.... ...+.+.+|+.++++++|+++     +++++.+..++..|+
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~l   79 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNI-----VGLYEAYFYENKLWI   79 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCce-----eEEEEEEecCCeEEE
Confidence            57999999999999999999998899999999987433 344567789999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.... ..+++..++.++.|++.||.|||++||+|+||||+||+++.++                  
T Consensus        80 v~e~~~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~------------------  140 (280)
T cd06611          80 LIEFCDGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDG------------------  140 (280)
T ss_pred             EeeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCC------------------
Confidence            99999 889999987643 3699999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhC-----CCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILG-----LGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                               .++|+|||.+.....   ......||..|+|||++..     ..++.++|||||||++|+|++|..||...
T Consensus       141 ---------~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~  211 (280)
T cd06611         141 ---------DVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHEL  211 (280)
T ss_pred             ---------CEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccC
Confidence                     456666665543222   1223468899999999853     34778999999999999999999999876


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +.......+...  ..|                                             .......++.++.++|.+
T Consensus       212 ~~~~~~~~~~~~--~~~---------------------------------------------~~~~~~~~~~~~~~li~~  244 (280)
T cd06611         212 NPMRVLLKILKS--EPP---------------------------------------------TLDQPSKWSSSFNDFLKS  244 (280)
T ss_pred             CHHHHHHHHhcC--CCC---------------------------------------------CcCCcccCCHHHHHHHHH
Confidence            554433322211  000                                             001112346689999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||+.||++||+++++++||||.+..
T Consensus       245 ~l~~~p~~Rps~~~il~~~~~~~~~  269 (280)
T cd06611         245 CLVKDPDDRPTAAELLKHPFVSDQS  269 (280)
T ss_pred             HhccChhhCcCHHHHhcChhhcccc
Confidence            9999999999999999999999763

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=7.2e-43  Score=328.01  Aligned_cols=282  Identities=30%  Similarity=0.478  Sum_probs=216.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|++.+.||+|++|.||+|.+..+++.||+|.+....   .....+.+|+.+++++.|+++     +++++++...+..
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~   76 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNI-----VRLQDVVHSEKRL   76 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCE-----eeEEEEEecCCeE
Confidence            46999999999999999999999999999999986432   233567789999999988877     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      |+||||++++|.+++.......+++..++.++.||+.||+|||++||+||||||+||+++..+                 
T Consensus        77 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~-----------------  139 (294)
T PLN00009         77 YLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRT-----------------  139 (294)
T ss_pred             EEEEecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCC-----------------
Confidence            999999987999988765544578899999999999999999999999999999999997432                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                               ..+||+|||++.......   ....++..|+|||++.+. .++.++|||||||++|+|++|..||...+..
T Consensus       140 ---------~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~  210 (294)
T PLN00009        140 ---------NALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEI  210 (294)
T ss_pred             ---------CEEEEcccccccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                     246788888775432221   223678899999998764 5789999999999999999999999888777


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+....+......+.....                   ........ . ..............+.++.++|.+||+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~i~~~l~  269 (294)
T PLN00009        211 DELFKIFRILGTPNEETWPGVTS-------------------LPDYKSAF-P-KWPPKDLATVVPTLEPAGVDLLSKMLR  269 (294)
T ss_pred             HHHHHHHHHhCCCChhhcccccc-------------------chhhhhhc-c-cCCCCCHHHhCcCCChHHHHHHHHHcc
Confidence            76666666555444332211100                   00000000 0 000001111234567789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .||++||++.++++||||.+-
T Consensus       270 ~~P~~Rps~~~~l~~~~~~~~  290 (294)
T PLN00009        270 LDPSKRITARAALEHEYFKDL  290 (294)
T ss_pred             CChhhCcCHHHHhcCchHhHH
Confidence            999999999999999999864

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=9.1e-43  Score=334.54  Aligned_cols=284  Identities=26%  Similarity=0.512  Sum_probs=219.2

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-  164 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-  164 (433)
                      .+.++|++.+.||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+.++.+++|+|+     +++++++.. 
T Consensus        14 ~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i-----v~~~~~~~~~   88 (345)
T cd07877          14 EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV-----IGLLDVFTPA   88 (345)
T ss_pred             hccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcc-----cceeeeeeec
Confidence            45678999999999999999999999999999999986532   223556789999999999887     888887753 


Q ss_pred             -----CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          165 -----RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       165 -----~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                           .+..|+++++++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+||+++.++        
T Consensus        89 ~~~~~~~~~~lv~~~~~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~--------  157 (345)
T cd07877          89 RSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDC--------  157 (345)
T ss_pred             ccccccccEEEEehhcccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCC--------
Confidence                 2458999999999999888654   589999999999999999999999999999999999997655        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                         .++|+|||++...........||..|+|||++.+ ..++.++|||||||++|+|++|+.||
T Consensus       158 -------------------~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf  218 (345)
T cd07877         158 -------------------ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLF  218 (345)
T ss_pred             -------------------CEEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                               4677777776655444444578899999999876 46889999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhh-hhhhcCCccccCCCCCCchhhHHHHHHhcCchhh-hhhccCCchHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRA-EKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL-IMQHVDHSAGDLI  396 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~  396 (433)
                      ...+....+..+.+..+..+..+........ ..+..                  ..   ...+.. ........+.++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~---~~~~~~~~~~~~~~~~~~~~  277 (345)
T cd07877         219 PGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQ------------------SL---TQMPKMNFANVFIGANPLAV  277 (345)
T ss_pred             CCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHH------------------Hh---cccCCcchhhhcCCCCHHHH
Confidence            8887777777777777666554432221110 00000                  00   000000 0011123467899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      +||.+||+.||.+|+|+.++++||||++...+
T Consensus       278 ~li~~~L~~dp~~R~t~~e~l~h~~f~~~~~~  309 (345)
T cd07877         278 DLLEKMLVLDSDKRITAAQALAHAYFAQYHDP  309 (345)
T ss_pred             HHHHHHcCCChhhcCCHHHHhcChhhhhcCCC
Confidence            99999999999999999999999999975443

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=3.6e-43  Score=327.52  Aligned_cols=251  Identities=22%  Similarity=0.375  Sum_probs=199.3

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +|++++.||+|+||.||+|.+..+++.||+|++...  ......+.+|+.+++++.|+++     +++++.+...+..++
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~l   76 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYI-----IGFYGAFFVENRISI   76 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCe-----eeEEEEEEECCEEEE
Confidence            588999999999999999999999999999998643  2334567889999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|..+.      .+++..+..++.||+.||.|||+.||+|+||||+|||++.++                  
T Consensus        77 v~e~~~~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~------------------  132 (279)
T cd06619          77 CTEFMDGGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRG------------------  132 (279)
T ss_pred             EEecCCCCChHHhh------cCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCC------------------
Confidence            99999 88886542      578999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHH-
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL-  327 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~-  327 (433)
                               .++|+|||++..... ......||..|+|||++.+..++.++|||||||++|+|++|..||......... 
T Consensus       133 ---------~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~  203 (279)
T cd06619         133 ---------QVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSL  203 (279)
T ss_pred             ---------CEEEeeCCcceecccccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhccccccc
Confidence                     467777776654332 223357899999999999888999999999999999999999999653211100 


Q ss_pred             --HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          328 --AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       328 --~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                        .........                                         ...+.   ......+.++.++|.+||+.
T Consensus       204 ~~~~~~~~~~~-----------------------------------------~~~~~---~~~~~~~~~~~~li~~~l~~  239 (279)
T cd06619         204 MPLQLLQCIVD-----------------------------------------EDPPV---LPVGQFSEKFVHFITQCMRK  239 (279)
T ss_pred             chHHHHHHHhc-----------------------------------------cCCCC---CCCCcCCHHHHHHHHHHhhC
Confidence              000000000                                         00000   00123466899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCC
Q 013941          406 DPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||++||+++|+++||||...
T Consensus       240 ~P~~Rp~~~eil~~~~~~~~  259 (279)
T cd06619         240 QPKERPAPENLMDHPFIVQY  259 (279)
T ss_pred             ChhhCCCHHHHhcCcccccc
Confidence            99999999999999999865

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=2.6e-43  Score=331.42  Aligned_cols=254  Identities=28%  Similarity=0.435  Sum_probs=204.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ..+|++++.||+|+||.||+|.+..+++.||+|.+.... ...+.+.+|+.+++.+.|+++     +++++++..++..|
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----~~~~~~~~~~~~~~   92 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNI-----VNYLDSYLVGDELW   92 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCE-----eeEEEEEecCCEEE
Confidence            468999999999999999999999999999999986433 334567789999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++.+.   .+++..+..++.|++.||.|||+.||+||||||+|||++.++.                
T Consensus        93 lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~----------------  153 (297)
T cd06656          93 VVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGS----------------  153 (297)
T ss_pred             EeecccCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCC----------------
Confidence            999999 99999998764   5899999999999999999999999999999999999976654                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                 ++|+|||.+......   .....++..|+|||.+.+..++.++|||||||++|+|++|..||.+.+...
T Consensus       154 -----------~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~  222 (297)
T cd06656         154 -----------VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR  222 (297)
T ss_pred             -----------EEECcCccceEccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcch
Confidence                       566666655432221   123468889999999999889999999999999999999999997654432


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+... + .|                                             ........+..+.+||.+||..
T Consensus       223 ~~~~~~~~-~-~~---------------------------------------------~~~~~~~~~~~~~~li~~~l~~  255 (297)
T cd06656         223 ALYLIATN-G-TP---------------------------------------------ELQNPERLSAVFRDFLNRCLEM  255 (297)
T ss_pred             heeeeccC-C-CC---------------------------------------------CCCCccccCHHHHHHHHHHccC
Confidence            21111000 0 00                                             0011223466889999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCc
Q 013941          406 DPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||++|||++++++||||....
T Consensus       256 ~p~~Rps~~~il~~~~~~~~~  276 (297)
T cd06656         256 DVDRRGSAKELLQHPFLKLAK  276 (297)
T ss_pred             ChhhCcCHHHHhcCchhcccc
Confidence            999999999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.4e-43  Score=326.84  Aligned_cols=252  Identities=27%  Similarity=0.426  Sum_probs=207.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.+.||.|+||.||+|.+..+++.||+|++....  .....+.+|+.+++.+.|+++     +++++++.++...|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~   75 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYI-----TKYYGSFLKGSKLW   75 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCe-----eeeeEEEEECCeEE
Confidence            36899999999999999999999999999999987533  233567789999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +|+||+ +++|.+++...   .+++..++.++.||+.||.|||+++|+|+||+|+||++++++                 
T Consensus        76 ~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~-----------------  135 (274)
T cd06609          76 IIMEYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEG-----------------  135 (274)
T ss_pred             EEEEeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCC-----------------
Confidence            999999 89999999765   689999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .++|+|||.+......   .....|+..|+|||++.+..++.++|||||||++|+|++|..||...+...
T Consensus       136 ----------~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~  205 (274)
T cd06609         136 ----------DVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMR  205 (274)
T ss_pred             ----------CEEEcccccceeecccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHH
Confidence                      4667777766544322   233578889999999998889999999999999999999999997655433


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC-chHHHHHHHHHhcc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH-SAGDLIDLLQGLLR  404 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~li~~~L~  404 (433)
                      ....+.....+                                                 ..... ++.++.++|.+||.
T Consensus       206 ~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~l~~~l~  236 (274)
T cd06609         206 VLFLIPKNNPP-------------------------------------------------SLEGNKFSKPFKDFVSLCLN  236 (274)
T ss_pred             HHHHhhhcCCC-------------------------------------------------CCcccccCHHHHHHHHHHhh
Confidence            32222111000                                                 00011 46689999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCCcc
Q 013941          405 YDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .||++|||++++++||||++..+
T Consensus       237 ~~p~~Rpt~~~il~~~~~~~~~~  259 (274)
T cd06609         237 KDPKERPSAKELLKHKFIKKAKK  259 (274)
T ss_pred             CChhhCcCHHHHhhChhhcCCCc
Confidence            99999999999999999998644

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=1.9e-43  Score=327.20  Aligned_cols=251  Identities=24%  Similarity=0.387  Sum_probs=199.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ++|++.+.||+|+||.||+|++..+++.||+|+++... .....+.+|+.+++.+.|+++     +++++.+...+.+|+
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~i-----i~~~~~~~~~~~~~l   83 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNI-----VAYFGSYLRRDKLWI   83 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCe-----eeEEEEEEeCCEEEE
Confidence            47999999999999999999999999999999987543 233456789999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++...+  .+++..++.++.||+.||+|||++||+|+||||+||+++.++.                 
T Consensus        84 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~-----------------  144 (267)
T cd06645          84 CMEFCGGGSLQDIYHVTG--PLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGH-----------------  144 (267)
T ss_pred             EEeccCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCC-----------------
Confidence            99999 889999987665  7999999999999999999999999999999999999976654                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhh---CCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~---~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                ++|+|||++......   .....|+..|+|||++.   ...++.++|||||||++|+|++|..||.....
T Consensus       145 ----------~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~  214 (267)
T cd06645         145 ----------VKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHP  214 (267)
T ss_pred             ----------EEECcceeeeEccCcccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccc
Confidence                      556666655432211   12347899999999985   44588999999999999999999999965443


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+.......+                                             .......++..+.++|.+||
T Consensus       215 ~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~li~~~l  249 (267)
T cd06645         215 MRALFLMTKSNFQPP---------------------------------------------KLKDKMKWSNSFHHFVKMAL  249 (267)
T ss_pred             hhhHHhhhccCCCCC---------------------------------------------cccccCCCCHHHHHHHHHHc
Confidence            322221111000000                                             00001134568899999999


Q ss_pred             ccCCCCCCCHHHHhcCCC
Q 013941          404 RYDPAERLKAREALRHPF  421 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~  421 (433)
                      +.||++|||++++++|||
T Consensus       250 ~~~P~~R~~~~~ll~~~~  267 (267)
T cd06645         250 TKNPKKRPTAEKLLQHPF  267 (267)
T ss_pred             cCCchhCcCHHHHhcCCC
Confidence            999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=4.7e-43  Score=327.28  Aligned_cols=254  Identities=27%  Similarity=0.473  Sum_probs=203.7

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      -|++.+.||+|+||.||+|.+..++..+++|.+.... ...+.+.+|+.+++.+.|+|+     +++++++..++..++|
T Consensus         6 ~~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----i~~~~~~~~~~~~~~v   80 (282)
T cd06643           6 FWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNI-----VKLLDAFYYENNLWIL   80 (282)
T ss_pred             HHHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCe-----eeEEEEEeeCCEEEEE
Confidence            3788999999999999999999999999999986433 345567789999999988877     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|..++.... ..+++..+..++.||+.||.|||+.||+||||||+|||++.++.                  
T Consensus        81 ~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~------------------  141 (282)
T cd06643          81 IEFCAGGAVDAVMLELE-RPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGD------------------  141 (282)
T ss_pred             EEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCC------------------
Confidence            9999 889988876533 36899999999999999999999999999999999999976654                  


Q ss_pred             ccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhh-----CCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                               ++|+|||++.....   ......||..|+|||++.     +..++.++|||||||++|+|++|..||...+
T Consensus       142 ---------~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~  212 (282)
T cd06643         142 ---------IKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELN  212 (282)
T ss_pred             ---------EEEccccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccC
Confidence                     56666665543221   112346889999999984     3457889999999999999999999998766


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      .......+.......                                               ......++.++.+||.+|
T Consensus       213 ~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~li~~~  245 (282)
T cd06643         213 PMRVLLKIAKSEPPT-----------------------------------------------LAQPSRWSSEFKDFLKKC  245 (282)
T ss_pred             HHHHHHHHhhcCCCC-----------------------------------------------CCCccccCHHHHHHHHHH
Confidence            554443332211100                                               001123466899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCc
Q 013941          403 LRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      |+.||++|||+.++++||||+...
T Consensus       246 l~~~p~~Rp~~~~il~~~~~~~~~  269 (282)
T cd06643         246 LEKNVDARWTTTQLLQHPFVTVNS  269 (282)
T ss_pred             ccCChhhCcCHHHHhcCCCEeccC
Confidence            999999999999999999999753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=4.2e-43  Score=329.27  Aligned_cols=254  Identities=26%  Similarity=0.474  Sum_probs=203.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .++|+++++||.|+||.||+|++..+++.||+|++.... .....+.+|+.+++.+.|+++     +++++.+..++..|
T Consensus        11 ~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~   85 (292)
T cd06644          11 NEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYI-----VKLLGAFYWDGKLW   85 (292)
T ss_pred             chhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcE-----eeeEEEEEeCCeEE
Confidence            357999999999999999999999999999999987543 345667789999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|..++.+.. ..+++..+..++.||+.||+|||++||+||||||+||+++.++                 
T Consensus        86 lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~-----------------  147 (292)
T cd06644          86 IMIEFCPGGAVDAIMLELD-RGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDG-----------------  147 (292)
T ss_pred             EEEecCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCC-----------------
Confidence            999999 889988876543 3689999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhh-----CCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                .++|+|||++.....   ......++..|+|||++.     ...++.++|||||||++|+|++|..||..
T Consensus       148 ----------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~  217 (292)
T cd06644         148 ----------DIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHE  217 (292)
T ss_pred             ----------CEEEccCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcc
Confidence                      466666666543221   112346788999999985     33478899999999999999999999977


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+.......+...  ..|                                             .......++.++.+||.
T Consensus       218 ~~~~~~~~~~~~~--~~~---------------------------------------------~~~~~~~~~~~~~~li~  250 (292)
T cd06644         218 LNPMRVLLKIAKS--EPP---------------------------------------------TLSQPSKWSMEFRDFLK  250 (292)
T ss_pred             ccHHHHHHHHhcC--CCc---------------------------------------------cCCCCcccCHHHHHHHH
Confidence            6543333222111  000                                             00112244668999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      +||..||++||+++++++||||..
T Consensus       251 ~~l~~~p~~Rp~~~~il~~~~~~~  274 (292)
T cd06644         251 TALDKHPETRPSAAQLLEHPFVSS  274 (292)
T ss_pred             HHhcCCcccCcCHHHHhcCccccc
Confidence            999999999999999999999985

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=4.3e-43  Score=335.77  Aligned_cols=300  Identities=27%  Similarity=0.476  Sum_probs=219.1

Q ss_pred             ccCCCeEE-eccccccccEEEEEEEecCCCcEEEEEEeccchhhH---------------HHHHHHHHHHHHHHhCCCCC
Q 013941           89 NLTPRYRI-LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR---------------EAAMIEIDVLQRLARHDIGG  152 (433)
Q Consensus        89 ~~~~~y~~-~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---------------~~~~~E~~~l~~l~~~~i~~  152 (433)
                      .+.++|.. .+.||+|+||+||+|.+..+++.||||+++......               ..+.+|+.+++.+.|+++  
T Consensus         5 ~~~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i--   82 (335)
T PTZ00024          5 SISERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENI--   82 (335)
T ss_pred             ccccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcce--
Confidence            34567875 467999999999999999999999999986432211               246789999999988877  


Q ss_pred             cceeEecceeccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCc
Q 013941          153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEY  232 (433)
Q Consensus       153 ~~~v~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~  232 (433)
                         +++++++..++..|+||||+.++|.+++....  .+++..+..++.||+.||+|||++||+|+||||+||+++.++.
T Consensus        83 ---v~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~--~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~  157 (335)
T PTZ00024         83 ---MGLVDVYVEGDFINLVMDIMASDLKKVVDRKI--RLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGI  157 (335)
T ss_pred             ---eeeeEEEecCCcEEEEEeccccCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCC
Confidence               99999999999999999999889999997654  6999999999999999999999999999999999999988887


Q ss_pred             ccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHH
Q 013941          233 VKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       233 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el  311 (433)
                      ++++|||++...........        .-.+.+..  .........++..|+|||.+.+. .++.++|||||||++|+|
T Consensus       158 ~kl~dfg~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el  227 (335)
T PTZ00024        158 CKIADFGLARRYGYPPYSDT--------LSKDETMQ--RREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAEL  227 (335)
T ss_pred             EEECCccceeeccccccccc--------cccccccc--ccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHH
Confidence            77777776544321110000        00000000  00111223568899999998764 468999999999999999


Q ss_pred             HhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       312 ~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      ++|..||.+.+..+.+..+....+.++...+...... ..+.      .+..               ..+..........
T Consensus       228 ~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~------~~~~---------------~~~~~~~~~~~~~  285 (335)
T PTZ00024        228 LTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKL-PLYT------EFTP---------------RKPKDLKTIFPNA  285 (335)
T ss_pred             HhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhc-cccc------ccCc---------------CCcccHHHhCcCC
Confidence            9999999998888877777776665443211110000 0000      0000               0000111122345


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      +.++.++|.+||+.||++|||++|++.||||++...
T Consensus       286 ~~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~~~  321 (335)
T PTZ00024        286 SDDAIDLLQSLLKLNPLERISAKEALKHEYFKSDPL  321 (335)
T ss_pred             ChHHHHHHHHHcCCCchhccCHHHHhcCcccCCCCC
Confidence            678999999999999999999999999999998643

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.1e-43  Score=329.17  Aligned_cols=256  Identities=21%  Similarity=0.364  Sum_probs=205.2

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +|++++.||+|+||.||+|.+..+++.||+|.+...  ......+.+|+.+++++.|+++     +++++.+...+..++
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~~~~~l   76 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYI-----VDFYGAFFIEGAVYM   76 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcH-----HhhhhheecCCeEEE
Confidence            689999999999999999999999999999988642  2334567889999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNS-YRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ||||+ +++|..++.... ...+++..+..++.||+.||.|||+ .||+||||||+||+++.++                
T Consensus        77 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~----------------  140 (286)
T cd06622          77 CMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNG----------------  140 (286)
T ss_pred             EEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCC----------------
Confidence            99999 899999887631 2368999999999999999999997 5999999999999997654                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhCC------CCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILGL------GWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                 .++|+|||.+..... ......|+..|+|||++.+.      .++.++|||||||++|+|++|..||..
T Consensus       141 -----------~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~  209 (286)
T cd06622         141 -----------QVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPP  209 (286)
T ss_pred             -----------CEEEeecCCcccccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCC
Confidence                       467777777654322 22334688899999998654      357899999999999999999999976


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .........+.......+.                                              .....++.++.+||.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~li~  243 (286)
T cd06622         210 ETYANIFAQLSAIVDGDPP----------------------------------------------TLPSGYSDDAQDFVA  243 (286)
T ss_pred             cchhhHHHHHHHHhhcCCC----------------------------------------------CCCcccCHHHHHHHH
Confidence            5544433333322211110                                              011235678999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      +||+.+|++||+++++++||||....
T Consensus       244 ~~l~~~p~~Rp~~~~l~~~~~~~~~~  269 (286)
T cd06622         244 KCLNKIPNRRPTYAQLLEHPWLVKYK  269 (286)
T ss_pred             HHcccCcccCCCHHHHhcChhhhhcc
Confidence            99999999999999999999998753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=6.1e-44  Score=339.77  Aligned_cols=254  Identities=27%  Similarity=0.383  Sum_probs=215.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .-.+.|.+.+.||+|.|+.|.+|++..++..||||++.+..   .......+|+++++.++||||     |+++.+.+..
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnI-----vkl~~v~~t~  127 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNI-----VKLFSVIETE  127 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcce-----eeeeeeeeec
Confidence            33467999999999999999999999999999999998643   334557889999999999988     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ..+|+||||+ +|.+++++.+++  .+.+..++.++.|+++|++|||+++|||||||.+|||++.               
T Consensus       128 ~~lylV~eya~~ge~~~yl~~~g--r~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~---------------  190 (596)
T KOG0586|consen  128 ATLYLVMEYASGGELFDYLVKHG--RMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDE---------------  190 (596)
T ss_pred             ceeEEEEEeccCchhHHHHHhcc--cchhhhhhhhhHHHHHHHHHHhhcceeccccchhhccccc---------------
Confidence            9999999999 999999999887  7888999999999999999999999999999999999854               


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCC-ccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~-~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                  +..+||+|||++......  ..+.+|++.|.|||++.+..|. +++|+||+|++||-|+.|..||.+.
T Consensus       191 ------------~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~  258 (596)
T KOG0586|consen  191 ------------NMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQ  258 (596)
T ss_pred             ------------ccceeeeccccceeecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCc
Confidence                        445888888888766543  3557999999999999998874 8999999999999999999999986


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +-............                                                  ...-..+.++.+||.+
T Consensus       259 ~lk~Lr~rvl~gk~--------------------------------------------------rIp~~ms~dce~lLrk  288 (596)
T KOG0586|consen  259 NLKELRPRVLRGKY--------------------------------------------------RIPFYMSCDCEDLLRK  288 (596)
T ss_pred             ccccccchheeeee--------------------------------------------------cccceeechhHHHHHH
Confidence            64432222111111                                                  1112346689999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      +|..+|.+|++.+++++|.|.....
T Consensus       289 ~lvl~Pskr~~~dqim~~~W~n~~~  313 (596)
T KOG0586|consen  289 FLVLNPSKRGPCDQIMKDRWRNDLL  313 (596)
T ss_pred             hhccCccccCCHHHhhhhcccchhh
Confidence            9999999999999999999998653

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=9e-43  Score=320.57  Aligned_cols=249  Identities=27%  Similarity=0.464  Sum_probs=205.5

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++.+.||+|+||.||++.+..+++.||+|.+...   ......+.+|+.++++++|+++     +++++++...++.+
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~   75 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNI-----VQYQESFEENGNLY   75 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCe-----eeeEeeecCCCeEE
Confidence            589999999999999999999999999999998642   2334567889999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++.......+++..+..++.|++.||.|||++|++|+||+|+||+++.++                 
T Consensus        76 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~-----------------  138 (256)
T cd08218          76 IVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDG-----------------  138 (256)
T ss_pred             EEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCC-----------------
Confidence            999999 89999999765544689999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .++|+|||.+.......   ....|+..|+|||++.+..++.++|+|||||++|+|++|..||...+..+
T Consensus       139 ----------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~  208 (256)
T cd08218         139 ----------TIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKN  208 (256)
T ss_pred             ----------CEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCHHH
Confidence                      46667776665432221   22467889999999998889999999999999999999999997665554


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+..  +..+                                               ......+.++.++|.+||+.
T Consensus       209 ~~~~~~~--~~~~-----------------------------------------------~~~~~~~~~~~~li~~~l~~  239 (256)
T cd08218         209 LVLKIIR--GSYP-----------------------------------------------PVSSHYSYDLRNLVSQLFKR  239 (256)
T ss_pred             HHHHHhc--CCCC-----------------------------------------------CCcccCCHHHHHHHHHHhhC
Confidence            4433321  1110                                               01123466899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      +|++||++.+|++||||
T Consensus       240 ~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         240 NPRDRPSVNSILEKNFI  256 (256)
T ss_pred             ChhhCcCHHHHhhCcCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=1.1e-42  Score=325.29  Aligned_cols=260  Identities=24%  Similarity=0.431  Sum_probs=202.4

Q ss_pred             eecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHH-hCCCCCcceeEeccee
Q 013941           84 FAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWF  162 (433)
Q Consensus        84 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~  162 (433)
                      +..-....++|++.+.||+|+||.||+|.+..+++.+|+|++.........+.+|+.+++.+. |+|+     +++++++
T Consensus        10 ~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i-----~~~~~~~   84 (286)
T cd06638          10 FDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNV-----VKFYGMY   84 (286)
T ss_pred             eecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCe-----eeeeeee
Confidence            333445667899999999999999999999999999999998765444566778999999994 7776     9999877


Q ss_pred             -----ccCCeEEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccc
Q 013941          163 -----DYRNHICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       163 -----~~~~~~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~  234 (433)
                           ..++..++||||+ +++|.+++...  ....+++..+..++.|++.||.|||+++|+||||||+||+++.++   
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~---  161 (286)
T cd06638          85 YKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEG---  161 (286)
T ss_pred             eecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCC---
Confidence                 3456899999999 99999987632  224688999999999999999999999999999999999997655   


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhC-----CCCCccchHHHHHH
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILG-----LGWNYPCDLWSVGC  306 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~  306 (433)
                                              .++|+|||++.....   ......|+..|+|||++..     ..++.++|||||||
T Consensus       162 ------------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv  217 (286)
T cd06638         162 ------------------------GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGI  217 (286)
T ss_pred             ------------------------CEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHH
Confidence                                    366677776654322   1123468999999999853     34789999999999


Q ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhh
Q 013941          307 ILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ  386 (433)
Q Consensus       307 il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (433)
                      ++|+|++|..||........+..+...  ..+                                             ...
T Consensus       218 i~~el~~g~~p~~~~~~~~~~~~~~~~--~~~---------------------------------------------~~~  250 (286)
T cd06638         218 TAIELGDGDPPLADLHPMRALFKIPRN--PPP---------------------------------------------TLH  250 (286)
T ss_pred             HHHHHhcCCCCCCCCchhHHHhhcccc--CCC---------------------------------------------ccc
Confidence            999999999999765443322111100  000                                             000


Q ss_pred             ccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       387 ~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ....++..+.+||.+||+.||++|||+.|+++|+||
T Consensus       251 ~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~~~  286 (286)
T cd06638         251 QPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             CCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcccC
Confidence            112235689999999999999999999999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=9.7e-43  Score=325.98  Aligned_cols=280  Identities=34%  Similarity=0.644  Sum_probs=213.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|++.+.||+|+||.||+|.+..+++.||+|+++..   ....+.+.+|+++++++.|+++     +++++++..++..
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~   75 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENI-----VNLKEAFRRKGRL   75 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCe-----eehhheEEECCEE
Confidence            3699999999999999999999999999999988643   2334678889999999998877     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++||||+++++.+.+.... ..+++..+..++.||+.||.|||++||+|+||+|+||+++.++                 
T Consensus        76 ~iv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~-----------------  137 (288)
T cd07833          76 YLVFEYVERTLLELLEASP-GGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESG-----------------  137 (288)
T ss_pred             EEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC-----------------
Confidence            9999999445444443332 3689999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                .++|+|||.+.......    ....++..|+|||++.+. .++.++||||||+++|+|++|..||.+...
T Consensus       138 ----------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~  207 (288)
T cd07833         138 ----------VLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSD  207 (288)
T ss_pred             ----------CEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence                      45666666655433221    234678899999999888 789999999999999999999999998887


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+.+..+....+.++............  +   ....++....             ...........++.++.+||.+||
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~li~~~l  269 (288)
T cd07833         208 IDQLYLIQKCLGPLPPSHQELFSSNPR--F---AGVAFPEPSQ-------------PESLERRYPGKVSSPALDFLKACL  269 (288)
T ss_pred             HHHHHHHHHHhCCCCHHHhhhcccCcc--c---cccccCCCCC-------------cHHHHHhcCCccchHHHHHHHHHh
Confidence            777777777777666533221110000  0   0000110000             000011122334788999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCC
Q 013941          404 RYDPAERLKAREALRHPFF  422 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f  422 (433)
                      ..||++|||++++++||||
T Consensus       270 ~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         270 RMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             ccCchhcccHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=1.6e-42  Score=325.18  Aligned_cols=280  Identities=28%  Similarity=0.481  Sum_probs=207.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....  .......+|+.+++.+.|+|+     +++++++..++..|
T Consensus         5 ~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-----~~~~~~~~~~~~~~   79 (291)
T cd07870           5 TSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANI-----VLLHDIIHTKETLT   79 (291)
T ss_pred             ceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCE-----eEEEEEEecCCeEE
Confidence            57999999999999999999999999999999986432  223456789999999988877     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||||++++|.+++.... ..+++..++.++.||+.||.|||++||+|+||||+|||++.++                  
T Consensus        80 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~------------------  140 (291)
T cd07870          80 FVFEYMHTDLAQYMIQHP-GGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLG------------------  140 (291)
T ss_pred             EEEecccCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCC------------------
Confidence            999999888888776543 3578899999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCCh-H
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHEN-L  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~-~  324 (433)
                               .++|+|||++......   .....++..|+|||++.+. .++.++|||||||++|+|++|..||.+... .
T Consensus       141 ---------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~  211 (291)
T cd07870         141 ---------ELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVF  211 (291)
T ss_pred             ---------cEEEeccccccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHH
Confidence                     4677777766542221   1223578899999998764 578899999999999999999999976543 3


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +.+..+....+.++......... ...+...     +... .........+.          . -..+.++.++|.+||+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~-~~~~~~~~~~~----------~-~~~~~~~~~ll~~~l~  273 (291)
T cd07870         212 EQLEKIWTVLGVPTEDTWPGVSK-LPNYKPE-----WFLP-CKPQQLRVVWK----------R-LSRPPKAEDLASQMLM  273 (291)
T ss_pred             HHHHHHHHHcCCCChhhhhhhhh-cccccch-----hccc-cCCcchhhhcc----------c-cCCChHHHHHHHHHhC
Confidence            44555555555444332221110 0000000     0000 00000001000          0 0125688999999999


Q ss_pred             cCCCCCCCHHHHhcCCCC
Q 013941          405 YDPAERLKAREALRHPFF  422 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f  422 (433)
                      .||++|||++|++.||||
T Consensus       274 ~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         274 MFPKDRISAQDALLHPYF  291 (291)
T ss_pred             cCcccCcCHHHHhcCCCC
Confidence            999999999999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=1.3e-42  Score=325.90  Aligned_cols=256  Identities=26%  Similarity=0.435  Sum_probs=201.6

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccC--
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYR--  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~--  165 (433)
                      ...++|++.+.||+|+||.||+|.+..+++.+|+|++.........+.+|+.+++++ .|+|+     +++++++...  
T Consensus        19 ~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni-----~~~~~~~~~~~~   93 (291)
T cd06639          19 DPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNV-----VKFYGMFYKADK   93 (291)
T ss_pred             CCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCe-----EEEEEEEEeccc
Confidence            346789999999999999999999999999999999876554556677899999988 56666     9999987642  


Q ss_pred             ---CeEEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          166 ---NHICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       166 ---~~~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                         +..++||||+ +++|.+++...  ....+++..++.++.|++.||+|||++||+||||||+||+++.++        
T Consensus        94 ~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~--------  165 (291)
T cd06639          94 LVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEG--------  165 (291)
T ss_pred             cCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCC--------
Confidence               4689999999 89999988632  224689999999999999999999999999999999999997655        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-----CCCccchHHHHHHHHHHH
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-----GWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-----~~~~~~DiwSlG~il~el  311 (433)
                                         .++|+|||.+......   .....|+..|+|||++...     .++.++|||||||++|+|
T Consensus       166 -------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el  226 (291)
T cd06639         166 -------------------GVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIEL  226 (291)
T ss_pred             -------------------CEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHH
Confidence                               4667777766543221   1234688899999998643     368999999999999999


Q ss_pred             HhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       312 ~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      ++|+.||........+..+.+.  ..+                                             ........
T Consensus       227 ~~g~~p~~~~~~~~~~~~~~~~--~~~---------------------------------------------~~~~~~~~  259 (291)
T cd06639         227 GDGDPPLFDMHPVKTLFKIPRN--PPP---------------------------------------------TLLHPEKW  259 (291)
T ss_pred             hhCCCCCCCCcHHHHHHHHhcC--CCC---------------------------------------------CCCccccc
Confidence            9999999876544333322111  000                                             00011234


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      +..+.+||.+||+.||++||++.|+++||||+
T Consensus       260 ~~~l~~li~~~l~~~p~~Rps~~~il~~~~~~  291 (291)
T cd06639         260 CRSFNHFISQCLIKDFEARPSVTHLLEHPFIK  291 (291)
T ss_pred             CHHHHHHHHHHhhcChhhCcCHHHHhcCcccC
Confidence            56799999999999999999999999999995

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=6.4e-43  Score=321.43  Aligned_cols=250  Identities=27%  Similarity=0.462  Sum_probs=204.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.+.||+|+||.||+|.+..+++.|++|.+..... .+.+.+|+.++++++|+++     +++++++......|++
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~e~~~~~~l~~~~i-----~~~~~~~~~~~~~~l~   76 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-LQEIIKEISILKQCDSPYI-----VKYYGSYFKNTDLWIV   76 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH-HHHHHHHHHHHHhCCCCcE-----eeeeeeeecCCcEEEE
Confidence            579999999999999999999998899999999876543 6778899999999988777     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      +||+ +++|.+++.... ..+++..++.++.||+.||.|||+.||+|+||+|+||+++.++                   
T Consensus        77 ~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~-------------------  136 (256)
T cd06612          77 MEYCGAGSVSDIMKITN-KTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEG-------------------  136 (256)
T ss_pred             EecCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCC-------------------
Confidence            9999 889999987543 4789999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL  327 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~  327 (433)
                              .++|+|||++......   .....|+..|+|||++.+..++.++|||||||++|+|++|+.||.........
T Consensus       137 --------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~  208 (256)
T cd06612         137 --------QAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAI  208 (256)
T ss_pred             --------cEEEcccccchhcccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhh
Confidence                    4566666665543322   12346788999999999888999999999999999999999999765443322


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP  407 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  407 (433)
                      ..+...   .+                                            ........++..+.++|.+||+.||
T Consensus       209 ~~~~~~---~~--------------------------------------------~~~~~~~~~~~~~~~~i~~~l~~~P  241 (256)
T cd06612         209 FMIPNK---PP--------------------------------------------PTLSDPEKWSPEFNDFVKKCLVKDP  241 (256)
T ss_pred             hhhccC---CC--------------------------------------------CCCCchhhcCHHHHHHHHHHHhcCh
Confidence            211100   00                                            0000112345689999999999999


Q ss_pred             CCCCCHHHHhcCCCC
Q 013941          408 AERLKAREALRHPFF  422 (433)
Q Consensus       408 ~~R~ta~ell~hp~f  422 (433)
                      ++|||+.|+++||||
T Consensus       242 ~~Rps~~~il~~~~~  256 (256)
T cd06612         242 EERPSAIQLLQHPFI  256 (256)
T ss_pred             hhCcCHHHHhcCCCC
Confidence            999999999999998

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-44  Score=326.71  Aligned_cols=251  Identities=26%  Similarity=0.410  Sum_probs=215.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ..|..+.+||+|+||.|.+|..+.+.+.||||+++++-    ...+..+.|-++|.....+    +.+++++.+|++-+.
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kp----pFL~qlHScFQTmDR  424 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKP----PFLVQLHSCFQTMDR  424 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCC----chHHHHHHHhhhhhh
Confidence            46899999999999999999999999999999998642    3334556677777766554    556999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ ||+|.-.+++-+  .+.+..+..++..|+-||-|||++|||+||||.+|||++.+|+              
T Consensus       425 LyFVMEyvnGGDLMyhiQQ~G--kFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGH--------------  488 (683)
T KOG0696|consen  425 LYFVMEYVNGGDLMYHIQQVG--KFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGH--------------  488 (683)
T ss_pred             eeeEEEEecCchhhhHHHHhc--ccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCc--------------
Confidence            99999999 999999998876  8999999999999999999999999999999999999987775              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                   +||+|||+++..-   ....+++||+.|+|||++.-++|+.++|+||+||+||||+.|++||.+.++
T Consensus       489 -------------iKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE  555 (683)
T KOG0696|consen  489 -------------IKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE  555 (683)
T ss_pred             -------------eEeeecccccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCH
Confidence                         5666666665322   234557999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+.+..|.......|                                                  ...|.++.++++..|
T Consensus       556 ~elF~aI~ehnvsyP--------------------------------------------------KslSkEAv~ickg~l  585 (683)
T KOG0696|consen  556 DELFQAIMEHNVSYP--------------------------------------------------KSLSKEAVAICKGLL  585 (683)
T ss_pred             HHHHHHHHHccCcCc--------------------------------------------------ccccHHHHHHHHHHh
Confidence            998888876544333                                                  344778999999999


Q ss_pred             ccCCCCCCC-----HHHHhcCCCCCCC
Q 013941          404 RYDPAERLK-----AREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~t-----a~ell~hp~f~~~  425 (433)
                      .+.|.+|+.     -.+|-.||||+..
T Consensus       586 tK~P~kRLGcg~~ge~di~~H~FFR~i  612 (683)
T KOG0696|consen  586 TKHPGKRLGCGPEGERDIREHPFFRRI  612 (683)
T ss_pred             hcCCccccCCCCccccchhhCcchhhc
Confidence            999999984     4689999999863

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=1.1e-42  Score=328.51  Aligned_cols=269  Identities=26%  Similarity=0.395  Sum_probs=206.4

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +|++.+.||+|+||.||++.+..+++.||+|.+....    .....+.+|+.+++.+.|+++     +++++.+..++.+
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~~~~   76 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFV-----VSMFCSFETKRHL   76 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCe-----eeeEEEEecCCEE
Confidence            6999999999999999999999999999999987543    233456789999999888777     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||+ +++|.+++....  .+++..+..++.|++.||.|||++||+||||||+||+++.++.++++|||++......
T Consensus        77 ~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~  154 (305)
T cd05609          77 CMVMEYVEGGDCATLLKNIG--ALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMS  154 (305)
T ss_pred             EEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcC
Confidence            9999999 899999997764  6899999999999999999999999999999999999988776666666654321100


Q ss_pred             CCcccCCCCCCCeeeecCCCCccc-cCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFE-HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                      ..          ..+.+....... ........|+..|+|||.+.+..++.++|||||||++|+|++|..||.+....+.
T Consensus       155 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~  224 (305)
T cd05609         155 LT----------TNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEEL  224 (305)
T ss_pred             cc----------ccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            00          000000000000 0011124678899999999888899999999999999999999999987665544


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+.......|                        .                       .....+.++.++|.+||+.|
T Consensus       225 ~~~~~~~~~~~~------------------------~-----------------------~~~~~~~~~~~li~~~l~~~  257 (305)
T cd05609         225 FGQVISDDIEWP------------------------E-----------------------GDEALPADAQDLISRLLRQN  257 (305)
T ss_pred             HHHHHhcccCCC------------------------C-----------------------ccccCCHHHHHHHHHHhccC
Confidence            433322111111                        0                       01134678999999999999


Q ss_pred             CCCCCC---HHHHhcCCCCCCC
Q 013941          407 PAERLK---AREALRHPFFTRD  425 (433)
Q Consensus       407 P~~R~t---a~ell~hp~f~~~  425 (433)
                      |++||+   +.++++||||...
T Consensus       258 P~~R~~~~~~~~ll~~~~~~~~  279 (305)
T cd05609         258 PLERLGTGGAFEVKQHRFFLGL  279 (305)
T ss_pred             hhhccCccCHHHHHhCccccCC
Confidence            999997   8999999999753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=8.3e-43  Score=322.53  Aligned_cols=257  Identities=26%  Similarity=0.409  Sum_probs=200.1

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      +|++.+.||+|+||.||+|.+ .+++.+|+|.+....       .....+.+|+++++.++|+++     +++++++.+.
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~   74 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLT-NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNI-----VQYLGTCLDD   74 (265)
T ss_pred             CccccceEeccCCeEEEEEEE-cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCE-----eeEeeEeecC
Confidence            478899999999999999986 578889999886322       223457789999999988877     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +..++||||+ +++|.+++.+..  .+++..+..++.||+.||+|||+.||+|+||||+||++++++.++++|||++...
T Consensus        75 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  152 (265)
T cd06631          75 NTISIFMEFVPGGSISSILNRFG--PLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRL  152 (265)
T ss_pred             CeEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhh
Confidence            9999999999 999999997754  6899999999999999999999999999999999999987776555555543322


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                      .....                  ............|+..|+|||++.+..++.++|||||||++|+|++|..||...+..
T Consensus       153 ~~~~~------------------~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~  214 (265)
T cd06631         153 AWVGL------------------HGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRL  214 (265)
T ss_pred             hhccc------------------cccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChH
Confidence            11000                  000001112246889999999999888999999999999999999999999765544


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+....+..|                                               .....++.++.++|.+||.
T Consensus       215 ~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~i~~~l~  247 (265)
T cd06631         215 AAMFYIGAHRGLMP-----------------------------------------------RLPDSFSAAAIDFVTSCLT  247 (265)
T ss_pred             HHHHHhhhccCCCC-----------------------------------------------CCCCCCCHHHHHHHHHHhc
Confidence            33322222111111                                               1123456789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCC
Q 013941          405 YDPAERLKAREALRHPFF  422 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f  422 (433)
                      .+|++|||+.|+++||||
T Consensus       248 ~~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         248 RDQHERPSALQLLRHDFL  265 (265)
T ss_pred             CCcccCCCHHHHhcCCCC
Confidence            999999999999999998

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-42  Score=333.60  Aligned_cols=282  Identities=29%  Similarity=0.528  Sum_probs=217.1

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.++|.+.+.||+|+||.||+|++..+++.||+|++.+.   ......+.+|+.+++.+.|+|+     +++++++...
T Consensus        12 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-----v~~~~~~~~~   86 (342)
T cd07879          12 ELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENV-----IGLLDVFTSA   86 (342)
T ss_pred             ccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCc-----cchhheeccc
Confidence            3457899999999999999999999999999999998642   2233457789999999999887     8888887653


Q ss_pred             ------CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          166 ------NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       166 ------~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                            ..+|+||||+..+|..++.    ..+++..+..++.||+.||+|||++||+||||||+||+++.++        
T Consensus        87 ~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~--------  154 (342)
T cd07879          87 VSGDEFQDFYLVMPYMQTDLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDC--------  154 (342)
T ss_pred             ccCCCCceEEEEecccccCHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC--------
Confidence                  3579999999778877653    2589999999999999999999999999999999999996554        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                         .++|+|||++...........+|..|+|||++.+ ..++.++|||||||++|||++|+.||
T Consensus       155 -------------------~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf  215 (342)
T cd07879         155 -------------------ELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLF  215 (342)
T ss_pred             -------------------CEEEeeCCCCcCCCCCCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCC
Confidence                               5777788777655444444578889999999876 45889999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCch-hhhhhccCCchHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP-NLIMQHVDHSAGDLID  397 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~  397 (433)
                      .+.+....+..+....+..+..+...........+...                    ....+ ..........+.++.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~  275 (342)
T cd07879         216 KGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKS--------------------LPKYPRKDFSTLFPKASPQAVD  275 (342)
T ss_pred             CCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhh--------------------cCCcccchHHHHhcCCCHHHHH
Confidence            98887777777777766655544333221110000000                    00000 0001112245678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||.+||+.||++|||+++++.||||....
T Consensus       276 li~~~l~~dP~~R~~~~e~l~h~~f~~~~  304 (342)
T cd07879         276 LLEKMLELDVDKRLTATEALEHPYFDSFR  304 (342)
T ss_pred             HHHHHcCCChhhCcCHHHHhcCcchhhcc
Confidence            99999999999999999999999998753

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1e-43  Score=302.43  Aligned_cols=251  Identities=24%  Similarity=0.313  Sum_probs=196.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-----
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-----  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-----  164 (433)
                      .+||++.+.||+|||+.||++++..+++.||+|++.... +..+..++|++..++++|+|+     ++++++...     
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~v-----l~l~dh~l~~~~D~   94 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNV-----LRLVDHQLREEKDG   94 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcch-----HHHHHHHHHhhccC
Confidence            368999999999999999999999999999999987544 667888999999999999887     888776543     


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccCcc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      ....||+++|+ .|+|.+.+...  .+..+++.++..|+.+|++||++||+..  ++||||||+|||+.+.+        
T Consensus        95 ~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~--------  166 (302)
T KOG2345|consen   95 KHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSG--------  166 (302)
T ss_pred             ceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCC--------
Confidence            34699999999 99999998743  3346999999999999999999999999  99999999999986544        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC------------cccccCCcccchhhhhCC---CCCccchHHHH
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------------SYVVSTRHYRAPEVILGL---GWNYPCDLWSV  304 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------------~~~~gt~~y~aPE~~~~~---~~~~~~DiwSl  304 (433)
                                         .++|+|||++......-            ..-..|..|+|||++.-.   ..+.++|||||
T Consensus       167 -------------------~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSL  227 (302)
T KOG2345|consen  167 -------------------LPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSL  227 (302)
T ss_pred             -------------------ceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhh
Confidence                               57888888775432111            112468899999998643   46899999999


Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhh
Q 013941          305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI  384 (433)
Q Consensus       305 G~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (433)
                      ||+||.|+.|..||...-                               ..|+.+....               ...+..
T Consensus       228 GCtLYa~mf~~sPfe~~~-------------------------------~~GgSlaLAv---------------~n~q~s  261 (302)
T KOG2345|consen  228 GCTLYAMMFGESPFERIY-------------------------------QQGGSLALAV---------------QNAQIS  261 (302)
T ss_pred             hHHHHHHHHcCCcchHHh-------------------------------hcCCeEEEee---------------eccccc
Confidence            999999999999995211                               0111111000               000011


Q ss_pred             hhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       385 ~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ......++..+.+||+.||+.||.+||++.+++.+
T Consensus       262 ~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  262 IPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             cCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHH
Confidence            11123468899999999999999999999999864

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=7.3e-43  Score=323.24  Aligned_cols=256  Identities=26%  Similarity=0.427  Sum_probs=200.7

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----------hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      +|.+...||+|+||.||+|.+..+++.||+|.+....          ...+.+.+|+.+++++.|+++     +++++++
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~   75 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENI-----VQYLGSS   75 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCe-----eeEEEEE
Confidence            4788899999999999999998899999999886422          122457789999999998877     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      ...+..++||||+ +++|.+++....  .+++..+..++.|++.||+|||++|++||||||+||+++.++.++|+|||++
T Consensus        76 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~  153 (267)
T cd06628          76 LDADHLNIFLEYVPGGSVAALLNNYG--AFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGIS  153 (267)
T ss_pred             EeCCccEEEEEecCCCCHHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCC
Confidence            9999999999999 889999998754  6899999999999999999999999999999999999987765555555543


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                      ........                  ............|+..|+|||.+.+..++.++|||||||++|+|++|..||...
T Consensus       154 ~~~~~~~~------------------~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  215 (267)
T cd06628         154 KKLEANSL------------------STKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDC  215 (267)
T ss_pred             cccccccc------------------cCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCc
Confidence            32211100                  000000112246788999999999888999999999999999999999999875


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +.......+....  .                                               .......+..+.++|.+
T Consensus       216 ~~~~~~~~~~~~~--~-----------------------------------------------~~~~~~~~~~~~~li~~  246 (267)
T cd06628         216 TQLQAIFKIGENA--S-----------------------------------------------PEIPSNISSEAIDFLEK  246 (267)
T ss_pred             cHHHHHHHHhccC--C-----------------------------------------------CcCCcccCHHHHHHHHH
Confidence            5433322221100  0                                               00112346789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ||+.||++||++.|+++||||
T Consensus       247 ~l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         247 TFEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             HccCCchhCcCHHHHhhCCCC
Confidence            999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=2.1e-42  Score=331.69  Aligned_cols=281  Identities=25%  Similarity=0.439  Sum_probs=206.5

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC---
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR---  165 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~---  165 (433)
                      +..+|++.+.||.|+||.||+|++..+++.||+|++.... ...+.+.+|++++++++|+++     +++++.+...   
T Consensus         3 ~~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i-----~~~~~~~~~~~~~   77 (342)
T cd07854           3 LGSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNI-----VKVYEVLGPSGSD   77 (342)
T ss_pred             cCcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcc-----hhhHhhhcccccc
Confidence            3578999999999999999999999999999999886433 334567789999999998887     8887765543   


Q ss_pred             -----------CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccc
Q 013941          166 -----------NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       166 -----------~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~  234 (433)
                                 ...|+||||++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+||+++..+   
T Consensus        78 ~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~---  151 (342)
T cd07854          78 LTEDVGSLTELNSVYIVQEYMETDLANVLEQG---PLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTED---  151 (342)
T ss_pred             cccccccccccceEEEEeecccccHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCC---
Confidence                       468999999987999888653   589999999999999999999999999999999999996432   


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhC-CCCCccchHHHHHHH
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCI  307 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~i  307 (433)
                                             ..++|+|||.+......      .....|+..|+|||++.+ ..++.++|||||||+
T Consensus       152 -----------------------~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvi  208 (342)
T cd07854         152 -----------------------LVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCI  208 (342)
T ss_pred             -----------------------ceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHH
Confidence                                   24677777776543211      112367889999998765 467899999999999


Q ss_pred             HHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhc
Q 013941          308 LVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH  387 (433)
Q Consensus       308 l~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (433)
                      +|+|++|+.||.+.+.......+..........................                    ...........
T Consensus       209 l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~  268 (342)
T cd07854         209 FAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRND--------------------GGEPRRPLRDL  268 (342)
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhc--------------------ccccCCCHHHH
Confidence            9999999999988777665554443322211111000000000000000                    00000001112


Q ss_pred             cCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       388 ~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      ....+.++.+||.+||+.||++|||+.|+++||||+.
T Consensus       269 ~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~  305 (342)
T cd07854         269 LPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYMSC  305 (342)
T ss_pred             ccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCcccc
Confidence            2346778999999999999999999999999999985

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=5.1e-43  Score=334.54  Aligned_cols=282  Identities=28%  Similarity=0.484  Sum_probs=220.4

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC---
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN---  166 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~---  166 (433)
                      +|++.+.||+|+||.||+|++..+++.||||++....   ...+.+.+|+.+++.++|+++     +++++++...+   
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~   75 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENI-----IGLLDILRPPSPED   75 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcch-----hhhhhhhcccCccc
Confidence            5899999999999999999999899999999987532   334567889999999998877     99999887765   


Q ss_pred             --eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          167 --HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       167 --~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                        .+|+||||++++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.            
T Consensus        76 ~~~~~lv~e~~~~~l~~~l~~~~--~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~------------  141 (330)
T cd07834          76 FNDVYIVTELMETDLHKVIKSPQ--PLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCD------------  141 (330)
T ss_pred             ccceEEEecchhhhHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCC------------
Confidence              899999999879999987654  7999999999999999999999999999999999999977664            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                     ++|+|||.+......      .....+|..|+|||++.+. .++.++|||||||++|+|++|..|
T Consensus       142 ---------------~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~p  206 (330)
T cd07834         142 ---------------LKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPL  206 (330)
T ss_pred             ---------------EEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCC
Confidence                           555555555433222      1224678899999999887 789999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhh-hhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADR-RAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      |.+.+..+....+....+.++...+..... ....+....                    ...............+.++.
T Consensus       207 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~  266 (330)
T cd07834         207 FPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSL--------------------PKKPKKPLSKLFPGASPEAI  266 (330)
T ss_pred             cCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhc--------------------ccCCcchhHHhcccCCHHHH
Confidence            999998888888888777766543321110 000000000                    00000011112234678899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      +||.+||++||++|||++++++||||++....
T Consensus       267 ~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~  298 (330)
T cd07834         267 DLLEKMLVFDPKKRITADEALAHPYLAQLHDP  298 (330)
T ss_pred             HHHHHHccCChhhCCCHHHHHhCccHHhhccc
Confidence            99999999999999999999999999875443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=8.2e-43  Score=323.00  Aligned_cols=253  Identities=26%  Similarity=0.470  Sum_probs=203.6

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      +|+..+.||+|+||.||+|.+..+++.||+|++....       ...+.+.+|+.++++++|+++     +++++++.+.
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~   75 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHI-----IRMLGATCED   75 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCce-----ehhhceeccC
Confidence            4788899999999999999999999999999986422       134667889999999998887     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +..++||||+ +++|.+++....  .+++..+..++.||+.||.|||++|++|+||||+||+++.++             
T Consensus        76 ~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~-------------  140 (268)
T cd06630          76 SHFNLFVEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTG-------------  140 (268)
T ss_pred             CeEEEEEeccCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC-------------
Confidence            9999999999 899999997654  689999999999999999999999999999999999996543             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC-------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                   ..++|+|||.+......       .....||..|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       141 -------------~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p  207 (268)
T cd06630         141 -------------QRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPP  207 (268)
T ss_pred             -------------CEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCC
Confidence                         23677777766543221       1224678899999999888899999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...........+.+.....                                             .........+.++.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~  242 (268)
T cd06630         208 WNAEKHSNHLALIFKIASAT---------------------------------------------TAPSIPEHLSPGLRD  242 (268)
T ss_pred             CCCCCCcchHHHHHHHhccC---------------------------------------------CCCCCchhhCHHHHH
Confidence            97544332222221110000                                             000111234678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      +|.+||..||++|||+.++++||||+
T Consensus       243 ~i~~~l~~~p~~R~~~~~ll~~~~~~  268 (268)
T cd06630         243 VTLRCLELQPEDRPPSRELLKHPVFR  268 (268)
T ss_pred             HHHHHcCCCcccCcCHHHHhcCcccC
Confidence            99999999999999999999999995

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=2.4e-42  Score=322.71  Aligned_cols=277  Identities=31%  Similarity=0.522  Sum_probs=211.3

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +|++.++||.|++|.||+|++..+++.||||+++...  .....+.+|+.++++++|+|+     +++++++...+..++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~~l   75 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENI-----VRLHDVIHTENKLML   75 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCE-----eeeeeeEeeCCcEEE
Confidence            4899999999999999999999999999999987543  234566789999999988877     999999999999999


Q ss_pred             EEccCCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKLGPSLYDFLRKNS-YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+.++|.+++.... ...+++..+..++.||+.||+|||++||+||||||+||++++++                  
T Consensus        76 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~------------------  137 (284)
T cd07836          76 VFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRG------------------  137 (284)
T ss_pred             EEecCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCC------------------
Confidence            99999779999887543 23589999999999999999999999999999999999997665                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                               .++|+|||.+......   .....+|..|+|||++.+. .++.++|||||||++|+|++|..||.+.+..+
T Consensus       138 ---------~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~  208 (284)
T cd07836         138 ---------ELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNED  208 (284)
T ss_pred             ---------cEEEeecchhhhhcCCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHH
Confidence                     4566666655432221   1223578899999998764 47899999999999999999999999888777


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+....+....+.... ....+.     ...+..  ..             ..........+..+.++|.+||+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~--~~-------------~~~~~~~~~~~~~~~~~i~~~l~~  267 (284)
T cd07836         209 QLLKIFRIMGTPTESTWPGIS-QLPEYK-----PTFPRY--PP-------------QDLQQLFPHADPLGIDLLHRLLQL  267 (284)
T ss_pred             HHHHHHHHhCCCChhhHHHHh-cCchhc-----ccccCC--Ch-------------HHHHHHhhhcCcHHHHHHHHHhcC
Confidence            777666655444332221111 000000     000000  00             000111223467899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      ||.+|||+.|+++||||
T Consensus       268 ~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         268 NPELRISAHDALQHPWF  284 (284)
T ss_pred             CcccCCCHHHHhcCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=1.4e-42  Score=319.26  Aligned_cols=250  Identities=27%  Similarity=0.404  Sum_probs=207.0

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++.+.||+|+||.||+|.+..+++.+|+|.+...   ......+.+|+.+++.++|+++     +++++.+..++..+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~~~~~   75 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNI-----IEYYENFLEDKALM   75 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCch-----hheeeeEecCCEEE
Confidence            589999999999999999999999999999998643   2334567889999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++.......+++..+..++.|++.||+|||++||+|+||||+||+++.++                 
T Consensus        76 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~-----------------  138 (256)
T cd08220          76 IVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHK-----------------  138 (256)
T ss_pred             EEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC-----------------
Confidence            999999 89999999876545689999999999999999999999999999999999996432                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                               ..++|+|||.+.......  ....|+..|+|||.+.+..++.++||||||+++|+|++|..||...+....
T Consensus       139 ---------~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~  209 (256)
T cd08220         139 ---------MVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPAL  209 (256)
T ss_pred             ---------CEEEEccCCCceecCCCccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHHH
Confidence                     246788888776543322  234688899999999988889999999999999999999999987655443


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+.....                                                 .......+.++.++|.+||..|
T Consensus       210 ~~~~~~~~~-------------------------------------------------~~~~~~~~~~l~~li~~~l~~~  240 (256)
T cd08220         210 VLKIMSGTF-------------------------------------------------APISDRYSPDLRQLILSMLNLD  240 (256)
T ss_pred             HHHHHhcCC-------------------------------------------------CCCCCCcCHHHHHHHHHHccCC
Confidence            332221100                                                 0011234678999999999999


Q ss_pred             CCCCCCHHHHhcCCCC
Q 013941          407 PAERLKAREALRHPFF  422 (433)
Q Consensus       407 P~~R~ta~ell~hp~f  422 (433)
                      |++|||+.|+++||||
T Consensus       241 p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         241 PSKRPQLSQIMAQPIC  256 (256)
T ss_pred             hhhCCCHHHHhhCCCC
Confidence            9999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=4.3e-43  Score=324.80  Aligned_cols=251  Identities=25%  Similarity=0.367  Sum_probs=198.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ++|++.+.||+|+||.||+|++..+++.||+|++.... .....+.+|+.+++++.|+++     +++++++...+.+++
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----i~~~~~~~~~~~~~i   83 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNI-----VAYFGSYLSREKLWI   83 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCe-----eeeeEEEEeCCEEEE
Confidence            46999999999999999999999999999999986432 334557789999999988887     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++....  .+++..+..++.|++.||+|||++||+||||||+||+++.++                  
T Consensus        84 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~------------------  143 (267)
T cd06646          84 CMEYCGGGSLQDIYHVTG--PLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNG------------------  143 (267)
T ss_pred             EEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCC------------------
Confidence            99999 889999987654  689999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhh---CCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~---~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                               .++|+|||++......   .....|+..|+|||.+.   ...++.++|||||||++|+|++|..||.....
T Consensus       144 ---------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~  214 (267)
T cd06646         144 ---------DVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHP  214 (267)
T ss_pred             ---------CEEECcCccceeecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccch
Confidence                     4666666666533211   12346888999999985   34578899999999999999999999965433


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+.......                        +                     .......++..+.+||.+||
T Consensus       215 ~~~~~~~~~~~~~~------------------------~---------------------~~~~~~~~~~~~~~li~~~l  249 (267)
T cd06646         215 MRALFLMSKSNFQP------------------------P---------------------KLKDKTKWSSTFHNFVKISL  249 (267)
T ss_pred             hhhheeeecCCCCC------------------------C---------------------CCccccccCHHHHHHHHHHh
Confidence            22111110000000                        0                     00011234678999999999


Q ss_pred             ccCCCCCCCHHHHhcCCC
Q 013941          404 RYDPAERLKAREALRHPF  421 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~  421 (433)
                      +.||++|||++++++|+|
T Consensus       250 ~~~P~~Rp~~~~il~~l~  267 (267)
T cd06646         250 TKNPKKRPTAERLLTHLF  267 (267)
T ss_pred             hCChhhCcCHHHHhcCCC
Confidence            999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.2e-43  Score=323.98  Aligned_cols=253  Identities=26%  Similarity=0.427  Sum_probs=201.4

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceecc-----
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDY-----  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~-----  164 (433)
                      .++|++.+.||+|++|.||+|.+..+++.+++|++.......+.+.+|+.+++++ .|+++     +++++++..     
T Consensus         5 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i-----~~~~~~~~~~~~~~   79 (275)
T cd06608           5 TGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNI-----ATFYGAFIKKNPPG   79 (275)
T ss_pred             hhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCCh-----heEEEEEEecCCCC
Confidence            4689999999999999999999998999999999987666667788999999998 57777     999998865     


Q ss_pred             -CCeEEEEEccC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          165 -RNHICIVFEKL-GPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       165 -~~~~~lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                       +..+++||||+ +++|.+++....  ...+++..++.++.||+.||.|||++||+|+||+|+||+++.++         
T Consensus        80 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~---------  150 (275)
T cd06608          80 NDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNA---------  150 (275)
T ss_pred             cceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCC---------
Confidence             34599999999 889999987532  35789999999999999999999999999999999999997655         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-----CCCccchHHHHHHHHHHHH
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-----GWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-----~~~~~~DiwSlG~il~el~  312 (433)
                                        .++|+|||++......   .....|+..|+|||++...     .++.++|||||||++|+|+
T Consensus       151 ------------------~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~  212 (275)
T cd06608         151 ------------------EVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELA  212 (275)
T ss_pred             ------------------eEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHH
Confidence                              4566666665432211   1234688999999998642     4678999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      +|..||...........+...   .+.                                            .......++
T Consensus       213 ~g~~p~~~~~~~~~~~~~~~~---~~~--------------------------------------------~~~~~~~~~  245 (275)
T cd06608         213 DGKPPLCDMHPMRALFKIPRN---PPP--------------------------------------------TLKSPENWS  245 (275)
T ss_pred             hCCCCccccchHHHHHHhhcc---CCC--------------------------------------------CCCchhhcC
Confidence            999999765443333222111   000                                            000112246


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ..+.+||.+||..||++|||++|+++|||+
T Consensus       246 ~~~~~li~~~l~~dp~~Rpt~~~ll~~~~~  275 (275)
T cd06608         246 KKFNDFISECLIKNYEQRPFMEELLEHPFI  275 (275)
T ss_pred             HHHHHHHHHHhhcChhhCcCHHHHhcCCCC
Confidence            689999999999999999999999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=1.5e-42  Score=324.46  Aligned_cols=278  Identities=30%  Similarity=0.532  Sum_probs=210.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|++.++||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+++++.++|+++     +++++++..++..
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~   75 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENL-----VNLIEVFRRKKRL   75 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcch-----hhHHHhcccCCeE
Confidence            46999999999999999999999899999999876432   234567789999999998887     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|..+.....  .+++..+..++.||+.||.|||+.||+|+||+|+||++++++                
T Consensus        76 ~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~----------------  137 (286)
T cd07846          76 YLVFEFVDHTVLDDLEKYPN--GLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSG----------------  137 (286)
T ss_pred             EEEEecCCccHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCC----------------
Confidence            9999999 777777665443  589999999999999999999999999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                 .++|+|||++......   .....++..|+|||++.+. .++.++|||||||++|+|++|.+||.....
T Consensus       138 -----------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~  206 (286)
T cd07846         138 -----------VVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSD  206 (286)
T ss_pred             -----------cEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCch
Confidence                       4566666665433221   1224678899999998764 478899999999999999999999988877


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+....+....+.++...........  .. .+  ...+..              ............++..+.+||.+||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~li~~~l  267 (286)
T cd07846         207 IDQLYHIIKCLGNLIPRHQEIFQKNP--LF-AG--MRLPEV--------------KEIEPLEKRFPKLSGLVLDLAKQCL  267 (286)
T ss_pred             HHHHHHHHHHhCCCchhhHHHhccch--Hh-hc--cccccc--------------cCcchHHHhCCCcCHHHHHHHHHHh
Confidence            77766666665554432111000000  00 00  000000              0000011123456788999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCC
Q 013941          404 RYDPAERLKAREALRHPFF  422 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f  422 (433)
                      +.||++|||+.++++||||
T Consensus       268 ~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         268 RIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             cCCcccchhHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=4.6e-43  Score=322.92  Aligned_cols=249  Identities=24%  Similarity=0.403  Sum_probs=203.1

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +|++.+.||.|+||.||+|.+..+++.||+|++.+..    ...+.+.+|++++++++|+|+     +++++.+..++..
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~   75 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFL-----VNLWYSFQDEENM   75 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCCh-----HHHHHhhcCCCeE
Confidence            4899999999999999999999999999999987532    344677889999999998888     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||+ +++|.+++....  .+++..+..++.||+.||.|||++||+|+||||+||+++.++.               
T Consensus        76 ~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~---------------  138 (258)
T cd05578          76 YLVVDLLLGGDLRYHLSQKV--KFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGH---------------  138 (258)
T ss_pred             EEEEeCCCCCCHHHHHHhcC--CcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCC---------------
Confidence            9999999 999999998763  7999999999999999999999999999999999999976654               


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                  ++|+|||.+......  .....|+..|+|||++.+..++.++|+||||+++|+|++|..||...+...
T Consensus       139 ------------~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~  206 (258)
T cd05578         139 ------------VHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTI  206 (258)
T ss_pred             ------------EEEeecccccccCCCccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccH
Confidence                        566666655443222  123467889999999998889999999999999999999999998765421


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ...........                                               ........+..+.++|.+||+.
T Consensus       207 ~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~i~~~l~~  239 (258)
T cd05578         207 RDQIRAKQETA-----------------------------------------------DVLYPATWSTEAIDAINKLLER  239 (258)
T ss_pred             HHHHHHHhccc-----------------------------------------------cccCcccCcHHHHHHHHHHccC
Confidence            11111100000                                               0011223467899999999999


Q ss_pred             CCCCCCCH--HHHhcCCCC
Q 013941          406 DPAERLKA--REALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta--~ell~hp~f  422 (433)
                      ||.+|+++  +|+++||||
T Consensus       240 ~p~~R~~~~~~~l~~~~~~  258 (258)
T cd05578         240 DPQKRLGDNLKDLKNHPYF  258 (258)
T ss_pred             ChhHcCCccHHHHhcCCCC
Confidence            99999999  999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-42  Score=323.69  Aligned_cols=276  Identities=32%  Similarity=0.548  Sum_probs=212.7

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      |++.+.||.|++|.||+|.+..+|+.||+|++....   .....+.+|+.+++.++|+++     +++++++.+++..|+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i-----v~~~~~~~~~~~~~i   75 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNI-----VRLLDVVHSENKLYL   75 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCc-----cCHhheeccCCeEEE
Confidence            678899999999999999999999999999986432   223567789999999998887     999999999999999


Q ss_pred             EEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          171 VFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       171 v~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      ||||++++|.+++.......+++..+..++.||+.||+|||+++++||||+|+||+++.++                   
T Consensus        76 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~-------------------  136 (283)
T cd07835          76 VFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREG-------------------  136 (283)
T ss_pred             EEeccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCC-------------------
Confidence            9999988999999876545689999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                              .++|+|||.+.......   ....++..|+|||++.+. .++.++|||||||++|+|++|..||...+....
T Consensus       137 --------~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~  208 (283)
T cd07835         137 --------ALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQ  208 (283)
T ss_pred             --------cEEEeecccccccCCCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                    45666666664332211   223568899999988764 578999999999999999999999998887777


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      +..+.+..+.+.+..+....... .+...     .+.              .. ..........++.++.++|.+||+.|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~--------------~~-~~~~~~~~~~~~~~~~~li~~~l~~~  267 (283)
T cd07835         209 LFRIFRTLGTPDEDVWPGVTSLP-DYKPT-----FPK--------------WA-RQDLSKVVPNLDEDGLDLLSKMLVYD  267 (283)
T ss_pred             HHHHHHHhCCCChHHhhhhhhch-hhhhh-----ccc--------------cc-ccchhhhcCCCCHHHHHHHHHHhcCC
Confidence            66666665554443221110000 00000     000              00 00111223456778999999999999


Q ss_pred             CCCCCCHHHHhcCCCC
Q 013941          407 PAERLKAREALRHPFF  422 (433)
Q Consensus       407 P~~R~ta~ell~hp~f  422 (433)
                      |++|||++|+++||||
T Consensus       268 P~~Rpt~~~il~~~~~  283 (283)
T cd07835         268 PAKRISAKAALQHPYF  283 (283)
T ss_pred             hhhCcCHHHHhcCCCC
Confidence            9999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=3.1e-42  Score=317.01  Aligned_cols=249  Identities=31%  Similarity=0.487  Sum_probs=205.8

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++++.||.|+||.||.+++..+++.+++|.+...   ......+.+|+.++++++|+++     +++++++.+.+..+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----~~~~~~~~~~~~~~   75 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNI-----IAYYNHFMDDNTLL   75 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCe-----eEEEeEEecCCeEE
Confidence            599999999999999999999999999999987642   3344567789999999988777     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++.......+++..+..++.|++.||.|||+.|++|+||||+||+++.++.                
T Consensus        76 ~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~----------------  139 (256)
T cd08221          76 IEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGL----------------  139 (256)
T ss_pred             EEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCC----------------
Confidence            999999 899999998764457899999999999999999999999999999999999977664                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                 +||+|||.+......   .....|+..|+|||++.+..++.++|||||||++|+|++|..||...+..+
T Consensus       140 -----------~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~  208 (256)
T cd08221         140 -----------IKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLN  208 (256)
T ss_pred             -----------EEECcCcceEEcccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHH
Confidence                       556666655433221   123468899999999988888999999999999999999999998766555


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+..  +..+                                               ......+.++.++|.+||..
T Consensus       209 ~~~~~~~--~~~~-----------------------------------------------~~~~~~~~~~~~~i~~~l~~  239 (256)
T cd08221         209 LVVKIVQ--GNYT-----------------------------------------------PVVSVYSSELISLVHSLLQQ  239 (256)
T ss_pred             HHHHHHc--CCCC-----------------------------------------------CCccccCHHHHHHHHHHccc
Confidence            4443321  1110                                               00123466899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      ||++||+++++++|+|+
T Consensus       240 ~p~~R~s~~~ll~~~~l  256 (256)
T cd08221         240 DPEKRPTADEVLDQPLL  256 (256)
T ss_pred             CcccCCCHHHHhhCcCC
Confidence            99999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-43  Score=347.69  Aligned_cols=244  Identities=30%  Similarity=0.395  Sum_probs=197.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEecc-chhhHHHHHHHHHHHHHHH-hCCCCCcceeEecce-ecc----
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS-INKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNW-FDY----  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-~~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~-~~~----  164 (433)
                      .+++|.+.|.+|||+.||+|++...+..||+|++-. ++...+.+.+||.++++|. |+||     |.+++. ...    
T Consensus        37 ~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nI-----V~yidss~~~~~~~  111 (738)
T KOG1989|consen   37 HRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNI-----VSYIDSSAINRSSN  111 (738)
T ss_pred             EEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCce-----eeEeccccccccCC
Confidence            468999999999999999999998889999998754 4456678889999999998 5555     999993 221    


Q ss_pred             --CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccCcc
Q 013941          165 --RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       165 --~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                        .-+++|.|||| ||.|-|++..+....|++.++++|+.|+++|+.+||...  |||||||-|||||..+|        
T Consensus       112 ~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g--------  183 (738)
T KOG1989|consen  112 NGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADG--------  183 (738)
T ss_pred             CceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCC--------
Confidence              23689999999 799999999776667999999999999999999999998  99999999999997665        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-c-----------ccccCCcccchhhhh---CCCCCccchHHHH
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-S-----------YVVSTRHYRAPEVIL---GLGWNYPCDLWSV  304 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-~-----------~~~gt~~y~aPE~~~---~~~~~~~~DiwSl  304 (433)
                                         .+||||||.+....... +           ...-|+.|+|||++.   +.+.+.|+|||+|
T Consensus       184 -------------------~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWAL  244 (738)
T KOG1989|consen  184 -------------------NYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWAL  244 (738)
T ss_pred             -------------------CEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHH
Confidence                               57888888775432222 1           124689999999874   6678999999999


Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhh
Q 013941          305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI  384 (433)
Q Consensus       305 G~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (433)
                      ||+||.|+....||.......    |...-..+|                                              
T Consensus       245 GclLYkLCy~t~PFe~sg~la----Ilng~Y~~P----------------------------------------------  274 (738)
T KOG1989|consen  245 GCLLYKLCYFTTPFEESGKLA----ILNGNYSFP----------------------------------------------  274 (738)
T ss_pred             HHHHHHHHHhCCCcCcCccee----EEeccccCC----------------------------------------------
Confidence            999999999999997643221    111111111                                              


Q ss_pred             hhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       385 ~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                        ..+.++..+.+||..||+.||.+||++-|++.+
T Consensus       275 --~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~  307 (738)
T KOG1989|consen  275 --PFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEE  307 (738)
T ss_pred             --CCccHHHHHHHHHHHHhccCcccCCCHHHHHHH
Confidence              124668899999999999999999999998864

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=4e-42  Score=328.53  Aligned_cols=285  Identities=26%  Similarity=0.433  Sum_probs=215.0

Q ss_pred             CeEEeccccccccEEEEEEEecCC--CcEEEEEEeccc---hhhHHHHHHHHHHHHHHH-hCCCCCcceeEecceec---
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEK--KELVAIKIVRSI---NKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFD---  163 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~---  163 (433)
                      +|++.+.||+|+||.||++.+..+  +..||+|++...   ......+.+|+.+++++. |+++     +++++.+.   
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i-----v~~~~~~~~~~   75 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNI-----TCLYDMDIVFP   75 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCh-----heeeeeeeecc
Confidence            489999999999999999999888  889999998642   123456778999999985 7766     88877543   


Q ss_pred             -cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 -YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 -~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                       ....+++++|+++++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.+         
T Consensus        76 ~~~~~~~~~~e~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~---------  144 (332)
T cd07857          76 GNFNELYLYEELMEADLHQIIRSGQ--PLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCEL---------  144 (332)
T ss_pred             ccCCcEEEEEecccCCHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCE---------
Confidence             235689999999889999987654  79999999999999999999999999999999999999876655         


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccC-------CCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-------DHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-------~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g  314 (433)
                                        +|+|||.+.....       ......||..|+|||++.+ ..++.++|||||||++|+|++|
T Consensus       145 ------------------kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g  206 (332)
T cd07857         145 ------------------KICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGR  206 (332)
T ss_pred             ------------------EeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhC
Confidence                              4555554432211       1122478999999998876 4689999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhh-hhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEK-YFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      ..||.+.+....+..+...++.++............. +.....                   .... ..........+.
T Consensus       207 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~  266 (332)
T cd07857         207 KPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLP-------------------NIPK-KPFESIFPNANP  266 (332)
T ss_pred             CcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhcc-------------------ccCC-cchHhhCCCCCH
Confidence            9999998888888888888887766543332211100 000000                   0000 000111233467


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCccccCC
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGF  431 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~~~  431 (433)
                      .+.+||.+||+.||++|||+.|+++||||++...+.+.
T Consensus       267 ~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~~~~~  304 (332)
T cd07857         267 LALDLLEKLLAFDPTKRISVEEALEHPYLAIWHDPDDE  304 (332)
T ss_pred             HHHHHHHHHccCCcccCCCHHHHhcChhhhhhcCcccc
Confidence            89999999999999999999999999999876544433

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-42  Score=318.15  Aligned_cols=252  Identities=28%  Similarity=0.427  Sum_probs=204.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ++|++.+.||+|+||.||+|.+..+++.+|+|++.... ...+.+.+|+.++++++|+++     +++++.+..++.+|+
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----~~~~~~~~~~~~~~l   77 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNI-----VAYFGSYLRRDKLWI   77 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCCh-----hceEEEEEeCCEEEE
Confidence            57999999999999999999999999999999987543 245677889999999998888     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +|||+ +++|.+++.... ..+++..+..++.|++.||.|||++||+|+||||+||+++.++.                 
T Consensus        78 ~~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~-----------------  139 (262)
T cd06613          78 VMEYCGGGSLQDIYQVTR-GPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGD-----------------  139 (262)
T ss_pred             EEeCCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCC-----------------
Confidence            99999 889999987652 36999999999999999999999999999999999999976654                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCC---CCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~---~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                ++|+|||.+.....   ......++..|+|||.+.+.   .++.++|||||||++|+|++|..||...+.
T Consensus       140 ----------~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~  209 (262)
T cd06613         140 ----------VKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHP  209 (262)
T ss_pred             ----------EEECccccchhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCH
Confidence                      56666666543322   12234688899999999877   788999999999999999999999987665


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+.......+                                             .......++.++.+||.+||
T Consensus       210 ~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~li~~~l  244 (262)
T cd06613         210 MRALFLISKSNFPPP---------------------------------------------KLKDKEKWSPVFHDFIKKCL  244 (262)
T ss_pred             HHHHHHHHhccCCCc---------------------------------------------cccchhhhhHHHHHHHHHHc
Confidence            444333222100000                                             00011233568999999999


Q ss_pred             ccCCCCCCCHHHHhcCCC
Q 013941          404 RYDPAERLKAREALRHPF  421 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~  421 (433)
                      ..||++|||+.+++.|+|
T Consensus       245 ~~~p~~Rpt~~~il~~~~  262 (262)
T cd06613         245 TKDPKKRPTATKLLQHPF  262 (262)
T ss_pred             CCChhhCCCHHHHhcCCC
Confidence            999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=2.3e-42  Score=319.66  Aligned_cols=255  Identities=23%  Similarity=0.378  Sum_probs=203.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.+.||.|+||+||+|....++..+|+|++....  .....+.+|+.+++.+.|+++     +++++.+..++..+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~   75 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNV-----VKYYTSFVVGDELW   75 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCE-----EEEEEEEeeCCEEE
Confidence            36999999999999999999998899999999986432  345677889999999988777     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSY-RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      +|||++ +++|.+++..... ..+++..++.++.||+.||.|||++||+||||||+||++++++.               
T Consensus        76 iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~---------------  140 (267)
T cd06610          76 LVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGS---------------  140 (267)
T ss_pred             EEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCC---------------
Confidence            999999 9999999976432 46899999999999999999999999999999999999977664               


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccC-------CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQ-------DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~-------~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                  ++|+|||++.....       ......|+..|+|||++... .++.++|+|||||++|+|++|..||.
T Consensus       141 ------------~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~  208 (267)
T cd06610         141 ------------VKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYS  208 (267)
T ss_pred             ------------EEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCcc
Confidence                        45555554432221       11234688999999998877 78999999999999999999999997


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ..+...........   .+..                    +..                     ......++..+.++|
T Consensus       209 ~~~~~~~~~~~~~~---~~~~--------------------~~~---------------------~~~~~~~~~~~~~li  244 (267)
T cd06610         209 KYPPMKVLMLTLQN---DPPS--------------------LET---------------------GADYKKYSKSFRKMI  244 (267)
T ss_pred             ccChhhhHHHHhcC---CCCC--------------------cCC---------------------ccccccccHHHHHHH
Confidence            65544332222111   0000                    000                     000124567899999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCC
Q 013941          400 QGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      .+||..||++|||++++++||||
T Consensus       245 ~~~l~~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         245 SLCLQKDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             HHHcCCChhhCcCHHHHhhCCCC
Confidence            99999999999999999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=7.4e-43  Score=327.49  Aligned_cols=254  Identities=26%  Similarity=0.418  Sum_probs=204.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +.|.....||+|+||.||++.+..++..||||.+.... ...+.+.+|+.+++.+.|+++     +++++.+..++..|+
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----i~~~~~~~~~~~~~l   96 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENV-----VDMYNSYLVGDELWV   96 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcH-----HHHHHheecCCeEEE
Confidence            44666788999999999999999999999999986433 334567789999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++...   .+++..+..++.||+.||.|||++||+||||||+||+++.++.                 
T Consensus        97 v~e~~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~-----------------  156 (292)
T cd06658          97 VMEFLEGGALTDIVTHT---RMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGR-----------------  156 (292)
T ss_pred             EEeCCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCC-----------------
Confidence            99999 88999988543   5899999999999999999999999999999999999976554                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                ++|+|||++.....   ......|+..|+|||++.+..++.++||||||+++|||++|..||...+....
T Consensus       157 ----------~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~  226 (292)
T cd06658         157 ----------IKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQA  226 (292)
T ss_pred             ----------EEEccCcchhhcccccccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                      56666665543211   11234688999999999888899999999999999999999999987665544


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+........                                               ......+..+.++|.+||..|
T Consensus       227 ~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~li~~~l~~~  259 (292)
T cd06658         227 MRRIRDNLPPRV-----------------------------------------------KDSHKVSSVLRGFLDLMLVRE  259 (292)
T ss_pred             HHHHHhcCCCcc-----------------------------------------------ccccccCHHHHHHHHHHccCC
Confidence            433322111100                                               001234668899999999999


Q ss_pred             CCCCCCHHHHhcCCCCCCCcc
Q 013941          407 PAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       407 P~~R~ta~ell~hp~f~~~~~  427 (433)
                      |++|||++|+++||||.....
T Consensus       260 P~~Rpt~~~il~~~~~~~~~~  280 (292)
T cd06658         260 PSQRATAQELLQHPFLKLAGP  280 (292)
T ss_pred             hhHCcCHHHHhhChhhhccCC
Confidence            999999999999999996533

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=2.9e-42  Score=321.33  Aligned_cols=249  Identities=25%  Similarity=0.404  Sum_probs=189.8

Q ss_pred             cccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEcc
Q 013941           99 KMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEK  174 (433)
Q Consensus        99 ~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~  174 (433)
                      .||+|+||.||++.+..+++.||+|.+.+..    .......+|..+++.+.+.  .|++++.+++.+..++..++||||
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~lv~e~   78 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG--DCPFIVCMTYAFHTPDKLCFILDL   78 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhC--CCCcEeEEEEEEecCCeEEEEEec
Confidence            4899999999999999999999999886432    1122334455444444322  345669999999999999999999


Q ss_pred             C-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccC
Q 013941          175 L-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN  253 (433)
Q Consensus       175 ~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~  253 (433)
                      + +++|.+++....  .+++..+..++.||+.||+|||++||+||||||+|||++.++                      
T Consensus        79 ~~~~~L~~~i~~~~--~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~----------------------  134 (279)
T cd05633          79 MNGGDLHYHLSQHG--VFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHG----------------------  134 (279)
T ss_pred             CCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCC----------------------
Confidence            9 999999987664  699999999999999999999999999999999999997655                      


Q ss_pred             CCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q 013941          254 LPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMME  331 (433)
Q Consensus       254 ~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~  331 (433)
                           .++|+|||++..... ......||..|+|||.+.+ ..++.++|||||||++|+|++|..||......... .+.
T Consensus       135 -----~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~-~~~  208 (279)
T cd05633         135 -----HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH-EID  208 (279)
T ss_pred             -----CEEEccCCcceeccccCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHH-HHH
Confidence                 466666666543322 1223468999999999874 56899999999999999999999999754321111 111


Q ss_pred             HHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCC
Q 013941          332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL  411 (433)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~  411 (433)
                      ......                                              ........+.++.++|.+||+.||++|+
T Consensus       209 ~~~~~~----------------------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~R~  242 (279)
T cd05633         209 RMTLTV----------------------------------------------NVELPDSFSPELKSLLEGLLQRDVSKRL  242 (279)
T ss_pred             HHhhcC----------------------------------------------CcCCccccCHHHHHHHHHHhcCCHHHhc
Confidence            110000                                              0011234567899999999999999999


Q ss_pred             -----CHHHHhcCCCCCCC
Q 013941          412 -----KAREALRHPFFTRD  425 (433)
Q Consensus       412 -----ta~ell~hp~f~~~  425 (433)
                           |++|+++||||+..
T Consensus       243 ~~~~~~~~~~~~h~~~~~~  261 (279)
T cd05633         243 GCLGRGAQEVKEHVFFKGI  261 (279)
T ss_pred             CCCCCCHHHHHhCccccCC
Confidence                 69999999999873

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=2.9e-42  Score=325.45  Aligned_cols=252  Identities=21%  Similarity=0.299  Sum_probs=193.7

Q ss_pred             CCeEEeccccccccEEEEEEEecC----------------CCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE----------------KKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~----------------~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      ++|++.++||+|+||.||+|.+..                ++..||+|++...  ......+.+|+.++.+++|+|+   
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni---   81 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNI---   81 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCe---
Confidence            579999999999999999997532                3457999998753  2344568899999999988877   


Q ss_pred             ceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCC-----------------CCCCHHHHHHHHHHHHHHHHHHHhCCc
Q 013941          154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSY-----------------RSFPIDLVRELGRQLLESVAFMHELRL  215 (433)
Q Consensus       154 ~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~-----------------~~l~~~~~~~i~~qi~~aL~~LH~~~i  215 (433)
                        +++++++.+.+..++||||+ +++|.+++.....                 ..+++..+..++.||+.||.|||++||
T Consensus        82 --v~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i  159 (304)
T cd05096          82 --IRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNF  159 (304)
T ss_pred             --eEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCc
Confidence              99999999999999999999 9999999865321                 246778899999999999999999999


Q ss_pred             EecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhh
Q 013941          216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVI  290 (433)
Q Consensus       216 vHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~  290 (433)
                      +||||||+|||++.++.                           +||+|||++.......     ....++..|+|||++
T Consensus       160 vH~dlkp~Nill~~~~~---------------------------~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  212 (304)
T cd05096         160 VHRDLATRNCLVGENLT---------------------------IKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECI  212 (304)
T ss_pred             cccCcchhheEEcCCcc---------------------------EEECCCccceecccCceeEecCcCCCCccccCHHHH
Confidence            99999999999976654                           5666666554332211     123457789999999


Q ss_pred             hCCCCCccchHHHHHHHHHHHHh--CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCch
Q 013941          291 LGLGWNYPCDLWSVGCILVELCS--GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR  368 (433)
Q Consensus       291 ~~~~~~~~~DiwSlG~il~el~~--g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (433)
                      .+..++.++|||||||++|||++  +..||...+..+....+.........                             
T Consensus       213 ~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----------------------------  263 (304)
T cd05096         213 LMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGR-----------------------------  263 (304)
T ss_pred             hcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHhhhccc-----------------------------
Confidence            98889999999999999999987  56788776655544433221110000                             


Q ss_pred             hhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHh
Q 013941          369 DSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREAL  417 (433)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell  417 (433)
                                   .........++..+.+||.+||+.||++|||++||.
T Consensus       264 -------------~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~  299 (304)
T cd05096         264 -------------QVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIH  299 (304)
T ss_pred             -------------cccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHH
Confidence                         000011234467899999999999999999999995

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=2e-42  Score=322.95  Aligned_cols=237  Identities=14%  Similarity=0.160  Sum_probs=192.4

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchhh----HHHHHHHHHHHHHHHhCCCCCcceeEecceecc----CCeEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY----REAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY----RNHIC  169 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~----~~~~~  169 (433)
                      ..||+|+++.||+|..  +|+.||||+++.....    .+.+.+|+.++.+++|+|+     +++++++.+    ...++
T Consensus        26 ~~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nI-----v~~~g~~~~~~~~~~~~~   98 (283)
T PHA02988         26 VLIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNI-----LKIYGFIIDIVDDLPRLS   98 (283)
T ss_pred             eEEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCE-----EEEeeeEEecccCCCceE
Confidence            5789999999999986  6889999999754322    3566799999999999877     999998866    45789


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      +||||+ +|+|.+++....  .+++.....++.|++.||.|||+ .+++||||||+|||++.++                
T Consensus        99 lv~Ey~~~g~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~----------------  160 (283)
T PHA02988         99 LILEYCTRGYLREVLDKEK--DLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENY----------------  160 (283)
T ss_pred             EEEEeCCCCcHHHHHhhCC--CCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCC----------------
Confidence            999999 999999998754  78999999999999999999998 4999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC--CCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                 .+||+|||++...........||..|+|||++.+  ..++.++|||||||++|||++|..||.+.+..+
T Consensus       161 -----------~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~  229 (283)
T PHA02988        161 -----------KLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKE  229 (283)
T ss_pred             -----------cEEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHH
Confidence                       4677777776654443344578899999999976  679999999999999999999999998776555


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+......++                                                .....+..+.+||.+||+.
T Consensus       230 ~~~~i~~~~~~~~------------------------------------------------~~~~~~~~l~~li~~cl~~  261 (283)
T PHA02988        230 IYDLIINKNNSLK------------------------------------------------LPLDCPLEIKCIVEACTSH  261 (283)
T ss_pred             HHHHHHhcCCCCC------------------------------------------------CCCcCcHHHHHHHHHHhcC
Confidence            4443322111100                                                1123467899999999999


Q ss_pred             CCCCCCCHHHHhc
Q 013941          406 DPAERLKAREALR  418 (433)
Q Consensus       406 dP~~R~ta~ell~  418 (433)
                      ||++|||++|+++
T Consensus       262 dp~~Rps~~ell~  274 (283)
T PHA02988        262 DSIKRPNIKEILY  274 (283)
T ss_pred             CcccCcCHHHHHH
Confidence            9999999999985

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=2.3e-42  Score=322.63  Aligned_cols=257  Identities=22%  Similarity=0.440  Sum_probs=197.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHH-HHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDV-LQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~-l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|++.+.||+|+||.||+|++..+|+.||+|+++...  ........|+.+ ++.+.|+++     +++++++..++..
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i-----v~~~~~~~~~~~~   75 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYT-----VTFYGALFREGDV   75 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCe-----eeeeEEEecCCcE
Confidence            36999999999999999999999999999999987532  223345556665 444455555     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          169 CIVFEKLGPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      |+||||+.++|.+++...  ....+++..++.++.||+.||+|||++ +++||||||+||+++.++              
T Consensus        76 ~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~--------------  141 (283)
T cd06617          76 WICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNG--------------  141 (283)
T ss_pred             EEEhhhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCC--------------
Confidence            999999988998888642  224689999999999999999999997 999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhC----CCCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILG----LGWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~----~~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                   .+||+|||.+......  .....|+..|+|||++.+    ..++.++|+|||||++|+|++|+.||.
T Consensus       142 -------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  208 (283)
T cd06617         142 -------------QVKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYD  208 (283)
T ss_pred             -------------CEEEeecccccccccccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCC
Confidence                         4667777766543221  122468889999999865    356899999999999999999999996


Q ss_pred             CCC-hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          320 THE-NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       320 ~~~-~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ... ..+.+..+..  +..+                     .                         .....++.++.++
T Consensus       209 ~~~~~~~~~~~~~~--~~~~---------------------~-------------------------~~~~~~~~~l~~l  240 (283)
T cd06617         209 SWKTPFQQLKQVVE--EPSP---------------------Q-------------------------LPAEKFSPEFQDF  240 (283)
T ss_pred             ccccCHHHHHHHHh--cCCC---------------------C-------------------------CCccccCHHHHHH
Confidence            432 2222221111  0000                     0                         0012346789999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      |.+||..+|++|||++++++||||.+...+
T Consensus       241 i~~~l~~~p~~Rp~~~~il~~~~~~~~~~~  270 (283)
T cd06617         241 VNKCLKKNYKERPNYPELLQHPFFELHLSK  270 (283)
T ss_pred             HHHHccCChhhCcCHHHHhcCchhhhcccc
Confidence            999999999999999999999999987543

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=3.9e-42  Score=318.31  Aligned_cols=248  Identities=30%  Similarity=0.445  Sum_probs=195.9

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--  164 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--  164 (433)
                      +|++.+.||+|+||.||+|.+..+++.||+|++....      .....+.+|+.+++.++|+++     +++++++.+  
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~   77 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERI-----VQYYGCLRDRA   77 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCe-----eeEEEEEEcCC
Confidence            5899999999999999999999999999999886321      233457789999999998887     999988765  


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ++.++++|||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+||+++.++.           
T Consensus        78 ~~~~~l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~-----------  144 (266)
T cd06651          78 EKTLTIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGN-----------  144 (266)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCC-----------
Confidence            46789999999 889999998654  6899999999999999999999999999999999999976554           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccC------CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ------DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                      ++|+|||++.....      ......++..|+|||++.+..++.++|||||||++|+|++|+.|
T Consensus       145 ----------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~p  208 (266)
T cd06651         145 ----------------VKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPP  208 (266)
T ss_pred             ----------------EEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCC
Confidence                            55666665543211      11123578899999999988899999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...........+... ...                                               .......+..+.+
T Consensus       209 f~~~~~~~~~~~~~~~-~~~-----------------------------------------------~~~~~~~~~~~~~  240 (266)
T cd06651         209 WAEYEAMAAIFKIATQ-PTN-----------------------------------------------PQLPSHISEHARD  240 (266)
T ss_pred             ccccchHHHHHHHhcC-CCC-----------------------------------------------CCCchhcCHHHHH
Confidence            9765433322211110 000                                               0011223567888


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      +| +||..+|++|||++|+++||||+
T Consensus       241 li-~~~~~~p~~Rp~~~eil~hp~~~  265 (266)
T cd06651         241 FL-GCIFVEARHRPSAEELLRHPFAQ  265 (266)
T ss_pred             HH-HHhcCChhhCcCHHHHhcCcccc
Confidence            88 67788999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=4e-42  Score=317.67  Aligned_cols=246  Identities=19%  Similarity=0.318  Sum_probs=200.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ..|.+.+.||+|+||.||+|.+..+++.||+|++.........+.+|+.+++.+.|+++     +++++++..++.+++|
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~lv   80 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNL-----VQLLGVCTREPPFYII   80 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCCh-----hheEEEEcCCCCcEEE
Confidence            35899999999999999999999999999999987665555678899999999988877     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.......+++..++.++.|++.||+|||++||+||||||+||+++.++.                  
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~------------------  142 (263)
T cd05052          81 TEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHL------------------  142 (263)
T ss_pred             EEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCc------------------
Confidence            9999 899999998765557899999999999999999999999999999999999976664                  


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCCc----ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDHS----YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                               ++|+|||.+........    ...++..|+|||.+.+..++.++|||||||++|||++ |..||.+.+..+
T Consensus       143 ---------~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~  213 (263)
T cd05052         143 ---------VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ  213 (263)
T ss_pred             ---------EEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH
Confidence                     55555555543322111    1233567999999998899999999999999999998 999998766544


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.....                                                 .......+.++.++|.+||+.
T Consensus       214 ~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~li~~cl~~  244 (263)
T cd05052         214 VYELLEKGYR-------------------------------------------------MERPEGCPPKVYELMRACWQW  244 (263)
T ss_pred             HHHHHHCCCC-------------------------------------------------CCCCCCCCHHHHHHHHHHccC
Confidence            3333221100                                                 011233467899999999999


Q ss_pred             CCCCCCCHHHHhc
Q 013941          406 DPAERLKAREALR  418 (433)
Q Consensus       406 dP~~R~ta~ell~  418 (433)
                      ||++|||+.++++
T Consensus       245 ~p~~Rp~~~~l~~  257 (263)
T cd05052         245 NPSDRPSFAEIHQ  257 (263)
T ss_pred             CcccCCCHHHHHH
Confidence            9999999999975

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=3.7e-42  Score=320.53  Aligned_cols=270  Identities=26%  Similarity=0.391  Sum_probs=211.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHH-hCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++...    ......+.+|+.++.++. |+++     +++++++...+
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i-----~~~~~~~~~~~   75 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGI-----IKLYYTFQDEE   75 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCc-----hhHHHHhcCCc
Confidence            3699999999999999999999999999999998652    233456778899999988 7766     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++|||++ +++|.+++.+..  .+++..+..++.||+.||.|||+.|++|+||||+||+++.++.++++|||+.....
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~  153 (280)
T cd05581          76 NLYFVLEYAPNGELLQYIRKYG--SLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLD  153 (280)
T ss_pred             eEEEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccC
Confidence            999999999 999999998765  79999999999999999999999999999999999999988888888888765443


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                      ...........    ...++..............|+..|+|||++.+..++.++||||||++++++++|..||.......
T Consensus       154 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~  229 (280)
T cd05581         154 PNSSPESNKGD----ATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYL  229 (280)
T ss_pred             CccccccCCCC----CccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHH
Confidence            32211000000    00111111111122233568899999999988889999999999999999999999998776544


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+......+                                                  ...++..+.+||.+||+.
T Consensus       230 ~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~li~~~l~~  259 (280)
T cd05581         230 TFQKILKLEYSF--------------------------------------------------PPNFPPDAKDLIEKLLVL  259 (280)
T ss_pred             HHHHHHhcCCCC--------------------------------------------------CCccCHHHHHHHHHHhcC
Confidence            433332211111                                                  123466899999999999


Q ss_pred             CCCCCCCH----HHHhcCCCC
Q 013941          406 DPAERLKA----REALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta----~ell~hp~f  422 (433)
                      ||++|||+    +++++||||
T Consensus       260 ~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         260 DPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             CHhhCCCcccCHHHHhcCCCC
Confidence            99999999    999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=3.9e-42  Score=316.41  Aligned_cols=250  Identities=26%  Similarity=0.414  Sum_probs=205.1

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++.+.||+|+||.||++.+..++..||+|.+....   ...+.+.+|+.+++.++|+++     +++++.+...+..+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i-----~~~~~~~~~~~~~~   75 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNI-----VTFFASFQENGRLF   75 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCCh-----hhhhheeccCCeEE
Confidence            5899999999999999999999999999999986431   334567789999999998887     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +|+||+ +++|.+++.......+++..+..++.||+.||.|||+++|+|+||||+||+++.++.                
T Consensus        76 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~----------------  139 (257)
T cd08225          76 IVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGM----------------  139 (257)
T ss_pred             EEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCC----------------
Confidence            999999 999999998765456899999999999999999999999999999999999976432                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .++|+|||.+.......   ....|+..|+|||++.+..++.++|+|||||++|+|++|..||...+...
T Consensus       140 ----------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~  209 (257)
T cd08225         140 ----------VAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQ  209 (257)
T ss_pred             ----------eEEecccccchhccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHH
Confidence                      35777777665443221   22368889999999988889999999999999999999999997665444


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+...  ..+                                               ......+.++.++|.+||..
T Consensus       210 ~~~~~~~~--~~~-----------------------------------------------~~~~~~~~~~~~~i~~~l~~  240 (257)
T cd08225         210 LVLKICQG--YFA-----------------------------------------------PISPNFSRDLRSLISQLFKV  240 (257)
T ss_pred             HHHHHhcc--cCC-----------------------------------------------CCCCCCCHHHHHHHHHHhcc
Confidence            33222110  000                                               01123456899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      +|++|||+.|+++||||
T Consensus       241 ~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         241 SPRDRPSITSILKRPFL  257 (257)
T ss_pred             ChhhCcCHHHHhhCCCC
Confidence            99999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=1.8e-42  Score=335.53  Aligned_cols=247  Identities=23%  Similarity=0.332  Sum_probs=191.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCC-----CcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEK-----KELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~-----~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ++|++.+.||+|+||.||+|++..+     ++.||+|+++...  ...+.+.+|+.+++.+ .|+||     +++++++.
T Consensus        38 ~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nI-----v~~~~~~~  112 (374)
T cd05106          38 DNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNI-----VNLLGACT  112 (374)
T ss_pred             HHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCce-----eeEeeEec
Confidence            4699999999999999999986443     3579999987432  3345678899999999 67777     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcC-------------------------------------------------------
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNS-------------------------------------------------------  187 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~-------------------------------------------------------  187 (433)
                      ..+.+++||||| +|+|.+++....                                                       
T Consensus       113 ~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (374)
T cd05106         113 HGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSS  192 (374)
T ss_pred             CCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccc
Confidence            999999999999 999999986431                                                       


Q ss_pred             -------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          188 -------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       188 -------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                                   ...+++..++.++.||+.||.|||++||+||||||+|||++.++.                      
T Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~----------------------  250 (374)
T cd05106         193 QSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRV----------------------  250 (374)
T ss_pred             ccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCe----------------------
Confidence                         124788899999999999999999999999999999999976664                      


Q ss_pred             CCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLA  328 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~  328 (433)
                           ++|+|||++.......     ....++..|+|||++.+..++.++|||||||++|+|++ |..||..........
T Consensus       251 -----~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~~~  325 (374)
T cd05106         251 -----AKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFY  325 (374)
T ss_pred             -----EEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHHHH
Confidence                 5555666554322111     11234567999999998899999999999999999997 999997654332222


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+......                                                .......+.++.++|.+||+.||+
T Consensus       326 ~~~~~~~~------------------------------------------------~~~~~~~~~~l~~li~~cl~~dp~  357 (374)
T cd05106         326 KMVKRGYQ------------------------------------------------MSRPDFAPPEIYSIMKMCWNLEPT  357 (374)
T ss_pred             HHHHcccC------------------------------------------------ccCCCCCCHHHHHHHHHHcCCChh
Confidence            21111000                                                001123467899999999999999


Q ss_pred             CCCCHHHHhc
Q 013941          409 ERLKAREALR  418 (433)
Q Consensus       409 ~R~ta~ell~  418 (433)
                      +|||+.++++
T Consensus       358 ~RPs~~~l~~  367 (374)
T cd05106         358 ERPTFSQISQ  367 (374)
T ss_pred             hCcCHHHHHH
Confidence            9999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=6.7e-42  Score=323.90  Aligned_cols=293  Identities=26%  Similarity=0.426  Sum_probs=213.6

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc---
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY---  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~---  164 (433)
                      .++|++.++||+|+||.||+|++..+++.||+|++....   .......+|+++++.++|+++     +++++++..   
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~   81 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNV-----VPLIDMAVERPD   81 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCc-----cchhhheecccc
Confidence            468999999999999999999999999999999886432   123456789999999999888     888887643   


Q ss_pred             -----CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          165 -----RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       165 -----~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                           ...+++||||++++|...+.... ..+++..++.++.||++||+|||++||+|+||||+||++++++.++++|||
T Consensus        82 ~~~~~~~~~~lv~~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg  160 (311)
T cd07866          82 KSKRKRGSVYMVTPYMDHDLSGLLENPS-VKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFG  160 (311)
T ss_pred             cccccCceEEEEEecCCcCHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCc
Confidence                 34579999999888888876543 469999999999999999999999999999999999999888877777777


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                      ++...........            .+.. ..........|+..|+|||++.+. .++.++|||||||++|+|++|++||
T Consensus       161 ~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~  227 (311)
T cd07866         161 LARPYDGPPPNPK------------GGGG-GGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPIL  227 (311)
T ss_pred             cchhccCCCcccc------------cCCc-ccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCC
Confidence            6543322211000            0000 000111234678899999988764 5789999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.+.......+....+.+++..+........       ...+....             ..+..........+..+.++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~  287 (311)
T cd07866         228 QGKSDIDQLHLIFKLCGTPTEETWPGWRSLPG-------CEGVHSFT-------------NYPRTLEERFGKLGPEGLDL  287 (311)
T ss_pred             CCCCHHHHHHHHHHHhCCCChhhchhhhhccc-------ccccccCC-------------CCCccHHHHcccCChhHHHH
Confidence            98888887777777666554432221110000       00000000             00000111123345689999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCC
Q 013941          399 LQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      |.+||+.||++|||+.|++.||||
T Consensus       288 i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         288 LSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             HHHHcccCcccCcCHHHHhcCCCC
Confidence            999999999999999999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=7.6e-42  Score=316.14  Aligned_cols=249  Identities=29%  Similarity=0.455  Sum_probs=196.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-  164 (433)
                      .+|++.+.||+|+||.||+|.+..+++.||||.+....      ...+.+.+|+.+++++.|+++     +++++++.+ 
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~   76 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERI-----VQYYGCLRDP   76 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCe-----eeEEeEeccC
Confidence            36999999999999999999999999999999875321      223567789999999988887     999998865 


Q ss_pred             -CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          165 -RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       165 -~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                       ...+++||||+ +++|.+++....  .+++..+..++.||+.||+|||++||+|+||||+||+++.++.+         
T Consensus        77 ~~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~---------  145 (265)
T cd06652          77 MERTLSIFMEHMPGGSIKDQLKSYG--ALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNV---------  145 (265)
T ss_pred             CCceEEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCE---------
Confidence             35789999999 899999997654  68999999999999999999999999999999999999776654         


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccC------CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ------DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                        +|+|||.+.....      ......|+..|+|||++.+..++.++|||||||++|+|++|+.
T Consensus       146 ------------------~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~  207 (265)
T cd06652         146 ------------------KLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKP  207 (265)
T ss_pred             ------------------EECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCC
Confidence                              5555554432211      1122468889999999998889999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||...........+.   ....                                             ........+..+.
T Consensus       208 p~~~~~~~~~~~~~~---~~~~---------------------------------------------~~~~~~~~~~~~~  239 (265)
T cd06652         208 PWAEFEAMAAIFKIA---TQPT---------------------------------------------NPVLPPHVSDHCR  239 (265)
T ss_pred             CCCccchHHHHHHHh---cCCC---------------------------------------------CCCCchhhCHHHH
Confidence            997654333222111   1000                                             0001123356789


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      ++|.+||. +|++|||++|+++|||+.
T Consensus       240 ~~i~~~l~-~p~~Rp~~~~il~~~~~~  265 (265)
T cd06652         240 DFLKRIFV-EAKLRPSADELLRHTFVH  265 (265)
T ss_pred             HHHHHHhc-ChhhCCCHHHHhcCcccC
Confidence            99999995 999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=2.6e-42  Score=321.36  Aligned_cols=247  Identities=26%  Similarity=0.432  Sum_probs=197.0

Q ss_pred             ccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941          100 MGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus       100 lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ||+|+||+||+|.+..+++.||+|++....    .....+..|+.++++++|+++     +++++.+...+..|+||||+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~lv~e~~   75 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFI-----VSLAYAFETKDDLCLVMTLM   75 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCE-----eeeeeEEecCCeEEEEEecC
Confidence            699999999999999999999999986432    223455679999999988776     99999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                       +++|.+++.......+++..+..++.||+.||.|||++||+||||+|+||+++.++                       
T Consensus        76 ~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~-----------------------  132 (277)
T cd05577          76 NGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHG-----------------------  132 (277)
T ss_pred             CCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCC-----------------------
Confidence             89999999876545799999999999999999999999999999999999997655                       


Q ss_pred             CCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER  332 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~  332 (433)
                          .++|+|||.+......  .....++..|+|||++.+..++.++|||||||++|+|++|+.||...........+..
T Consensus       133 ----~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~  208 (277)
T cd05577         133 ----NVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKR  208 (277)
T ss_pred             ----CEEEccCcchhhhccCCccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHh
Confidence                4566666665443221  1224678899999999888899999999999999999999999976543221111111


Q ss_pred             HhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCC-
Q 013941          333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL-  411 (433)
Q Consensus       333 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~-  411 (433)
                      ....                                              .........++++.++|.+||+.||++|| 
T Consensus       209 ~~~~----------------------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~R~~  242 (277)
T cd05577         209 RTLE----------------------------------------------MAVEYPDKFSPEAKDLCEALLQKDPEKRLG  242 (277)
T ss_pred             cccc----------------------------------------------ccccCCccCCHHHHHHHHHHccCChhHccC
Confidence            1000                                              00011234477899999999999999999 


Q ss_pred             ----CHHHHhcCCCCCC
Q 013941          412 ----KAREALRHPFFTR  424 (433)
Q Consensus       412 ----ta~ell~hp~f~~  424 (433)
                          ++.++++||||.+
T Consensus       243 ~~~~~~~~ll~h~~~~~  259 (277)
T cd05577         243 CRGGSADEVREHPLFKD  259 (277)
T ss_pred             CCcccHHHHHhChhhhc
Confidence                9999999999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6e-42  Score=315.88  Aligned_cols=246  Identities=26%  Similarity=0.451  Sum_probs=192.1

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchhh----HHHHHHHHHHHH-HHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY----REAAMIEIDVLQ-RLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~-~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|.+..+++.||+|++++....    ......|..++. ...|+     +++++++++..++.+|+||
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-----~i~~~~~~~~~~~~~~lv~   76 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESP-----YVAKLYYSFQSKDYLYLVM   76 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCC-----CeeeeeeeEEcCCeEEEEE
Confidence            5799999999999999999999999998653311    112233433332 23444     4599999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..+..++.||+.||.|||+.||+||||+|+||+++.++                    
T Consensus        77 e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~--------------------  134 (260)
T cd05611          77 EYLNGGDCASLIKTLG--GLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTG--------------------  134 (260)
T ss_pred             eccCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCC--------------------
Confidence            999 999999998754  689999999999999999999999999999999999997655                    


Q ss_pred             cCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMME  331 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~  331 (433)
                             .++|+|||++..... .....|+..|+|||.+.+..++.++||||||+++|+|++|..||...+.......+.
T Consensus       135 -------~~~l~dfg~~~~~~~-~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~  206 (260)
T cd05611         135 -------HLKLTDFGLSRNGLE-NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNIL  206 (260)
T ss_pred             -------cEEEeecccceeccc-cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence                   467777776654332 223468889999999998888999999999999999999999998766554433332


Q ss_pred             HHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCC
Q 013941          332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL  411 (433)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~  411 (433)
                      ....                        .|+.                      .....++..+.++|.+||+.||++||
T Consensus       207 ~~~~------------------------~~~~----------------------~~~~~~~~~~~~~i~~~l~~~p~~R~  240 (260)
T cd05611         207 SRRI------------------------NWPE----------------------EVKEFCSPEAVDLINRLLCMDPAKRL  240 (260)
T ss_pred             hccc------------------------CCCC----------------------cccccCCHHHHHHHHHHccCCHHHcc
Confidence            2110                        0100                      01123467899999999999999999


Q ss_pred             C---HHHHhcCCCCCC
Q 013941          412 K---AREALRHPFFTR  424 (433)
Q Consensus       412 t---a~ell~hp~f~~  424 (433)
                      |   ++|+++||||++
T Consensus       241 ~~~~~~~~l~~~~~~~  256 (260)
T cd05611         241 GANGYQEIKSHPFFKS  256 (260)
T ss_pred             CCCcHHHHHcChHhhc
Confidence            5   579999999976

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=5e-42  Score=315.48  Aligned_cols=246  Identities=27%  Similarity=0.426  Sum_probs=201.0

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +|++.+.||+|+||.||++++..+++.||+|.++..  ....+...+|+.+++.+.|+|+     +++++.+.+++.+|+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~l   75 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNI-----VAFKESFEADGHLYI   75 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCc-----ceEEEEEEECCEEEE
Confidence            489999999999999999999999999999998642  3344667789999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.||+.||.|||++||+|+||||+||+++.++                  
T Consensus        76 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~------------------  137 (255)
T cd08219          76 VMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNG------------------  137 (255)
T ss_pred             EEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCC------------------
Confidence            99999 89999998765545689999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                               .++|+|||.+......   .....|+..|+|||++.+..++.++|+||||+++|+|++|..||...+....
T Consensus       138 ---------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~  208 (255)
T cd08219         138 ---------KVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNL  208 (255)
T ss_pred             ---------cEEEcccCcceeecccccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHHH
Confidence                     4566666665443221   1234688899999999988899999999999999999999999987655443


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+....  .+                                               .....++..+.+||.+||+.|
T Consensus       209 ~~~~~~~~--~~-----------------------------------------------~~~~~~~~~~~~li~~~l~~~  239 (255)
T cd08219         209 ILKVCQGS--YK-----------------------------------------------PLPSHYSYELRSLIKQMFKRN  239 (255)
T ss_pred             HHHHhcCC--CC-----------------------------------------------CCCcccCHHHHHHHHHHHhCC
Confidence            33322110  00                                               011234568899999999999


Q ss_pred             CCCCCCHHHHhcC
Q 013941          407 PAERLKAREALRH  419 (433)
Q Consensus       407 P~~R~ta~ell~h  419 (433)
                      |++|||+.+++.-
T Consensus       240 P~~Rp~~~~il~~  252 (255)
T cd08219         240 PRSRPSATTILSR  252 (255)
T ss_pred             cccCCCHHHHhhc
Confidence            9999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=5.4e-42  Score=320.60  Aligned_cols=276  Identities=31%  Similarity=0.519  Sum_probs=210.5

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC--CeE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR--NHI  168 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~--~~~  168 (433)
                      |++.+.||+|+||.||+|.+..+++.+|+|++...   ......+.+|+.+++.+.|+++     +++++++...  +..
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~~   75 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNI-----VRLKEIVTSKGKGSI   75 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCe-----eeheeeEecCCCCcE
Confidence            67899999999999999999999999999999764   2334567789999999988777     9999999887  899


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++||||+.++|.+++.... ..+++..++.++.||+.||+|||++|++|+||||+||++++++.                
T Consensus        76 ~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~----------------  138 (287)
T cd07840          76 YMVFEYMDHDLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGV----------------  138 (287)
T ss_pred             EEEeccccccHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCC----------------
Confidence            9999999779999887653 36999999999999999999999999999999999999977664                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                 ++|+|||.+......    .....++..|+|||.+.+. .++.++||||||+++|+|++|..||...+.
T Consensus       139 -----------~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~  207 (287)
T cd07840         139 -----------LKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTE  207 (287)
T ss_pred             -----------EEEccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence                       556666655433322    1224567889999987654 578999999999999999999999998887


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC-chHHHHHHHHHh
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH-SAGDLIDLLQGL  402 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~li~~~  402 (433)
                      ...+..+.+..+.++...+......           .+.....         .....+......... .+.++.++|.+|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~  267 (287)
T cd07840         208 LEQLEKIFELCGSPTDENWPGVSKL-----------PWFENLK---------PKKPYKRRLREFFKHLIDPSALDLLDKL  267 (287)
T ss_pred             HHHHHHHHHHhCCCchhhccccccc-----------hhhhhcc---------ccccchhHHHHHhcccCCHHHHHHHHHH
Confidence            7777777666555443221111000           0000000         000001111111122 377899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCC
Q 013941          403 LRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f  422 (433)
                      |+.||++|||+.++++||||
T Consensus       268 l~~~P~~Rp~~~~~l~~~~~  287 (287)
T cd07840         268 LTLDPKKRISADQALQHEYF  287 (287)
T ss_pred             cCCChhhCcCHHHHhhCcCC
Confidence            99999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=1.8e-42  Score=320.10  Aligned_cols=255  Identities=27%  Similarity=0.461  Sum_probs=205.4

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +|++.+.||+|+||.||+|.+..+++.||+|.+...  ......+.+|+++++++.|+++     +++++.+...+..++
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~~~~~l   76 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYI-----VGFYGAFYNNGDISI   76 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCch-----hhhheeeecCCEEEE
Confidence            588999999999999999999999999999998754  2344667889999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      |+||+ +++|.+++.... ..+++..+..++.||+.||+|||+ .|++|+||||+||+++.++                 
T Consensus        77 v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~-----------------  138 (265)
T cd06605          77 CMEYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRG-----------------  138 (265)
T ss_pred             EEEecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCC-----------------
Confidence            99999 799999998653 478999999999999999999999 9999999999999997654                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh--HH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN--LE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~--~~  325 (433)
                                .++|+|||.+...... .....++..|+|||.+.+..++.++|||||||++|+|++|..||.....  ..
T Consensus       139 ----------~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~  208 (265)
T cd06605         139 ----------QIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDG  208 (265)
T ss_pred             ----------CEEEeecccchhhHHHHhhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccccccc
Confidence                      5777888776543221 1125788899999999998999999999999999999999999965421  11


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.......+.                                          ..   ....++.++.++|.+||..
T Consensus       209 ~~~~~~~~~~~~~~------------------------------------------~~---~~~~~~~~~~~li~~~l~~  243 (265)
T cd06605         209 IFELLQYIVNEPPP------------------------------------------RL---PSGKFSPDFQDFVNLCLIK  243 (265)
T ss_pred             HHHHHHHHhcCCCC------------------------------------------CC---ChhhcCHHHHHHHHHHcCC
Confidence            11111111111000                                          00   0011467899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCC
Q 013941          406 DPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||++|||+.+++.||||++.
T Consensus       244 ~p~~Rpt~~~ll~~~~~~~~  263 (265)
T cd06605         244 DPRERPSYKELLEHPFIKKY  263 (265)
T ss_pred             CchhCcCHHHHhhCchhhcc
Confidence            99999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=4.7e-42  Score=320.87  Aligned_cols=257  Identities=26%  Similarity=0.420  Sum_probs=204.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++++.||+|+||+||++.+..+++.||+|++...  ......+.+|+++++.++|+++     +++++.+...+.++
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~~   79 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYI-----VSFYGAFLNENNIC   79 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCc-----ceEeeeEecCCEEE
Confidence            4699999999999999999999999999999988643  2345677889999999988888     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      +||||+ +++|.+++...+  .+++..+..++.|++.||.|||+ .||+||||||+||+++.++                
T Consensus        80 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~----------------  141 (284)
T cd06620          80 MCMEFMDCGSLDRIYKKGG--PIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRG----------------  141 (284)
T ss_pred             EEEecCCCCCHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCC----------------
Confidence            999999 899999987754  68999999999999999999997 6999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCcccc-CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEH-QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                 .++|+|||++.... .......|+..|+|||++.+..++.++|||||||++|+|++|..||........
T Consensus       142 -----------~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~  210 (284)
T cd06620         142 -----------QIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDD  210 (284)
T ss_pred             -----------cEEEccCCcccchhhhccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhh
Confidence                       46677777654322 122335789999999999888899999999999999999999999986543211


Q ss_pred             --------HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          327 --------LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       327 --------~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                              ...+.......+                                          +.   ......+.++.+|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~------------------------------------------~~---~~~~~~~~~~~~l  245 (284)
T cd06620         211 GQDDPMGILDLLQQIVQEPP------------------------------------------PR---LPSSDFPEDLRDF  245 (284)
T ss_pred             hhhhhhHHHHHHHHHhhccC------------------------------------------CC---CCchhcCHHHHHH
Confidence                    010111000000                                          00   0001245689999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      |.+||+.||++|||+.|+++|+||.+..+
T Consensus       246 i~~~l~~dp~~Rpt~~e~~~~~~~~~~~~  274 (284)
T cd06620         246 VDACLLKDPTERPTPQQLCAMPPFIQALR  274 (284)
T ss_pred             HHHHhcCCcccCcCHHHHhcCcccccccc
Confidence            99999999999999999999999977533

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=3.3e-42  Score=318.01  Aligned_cols=244  Identities=28%  Similarity=0.435  Sum_probs=198.9

Q ss_pred             ccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941          100 MGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus       100 lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ||.|+||.||+|++..+++.||+|++....    ...+.+.+|+.+++.+.|+++     +++++.+.+++..|+||||+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~lv~e~~   75 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFI-----VKLYRTFKDKKYIYMLMEYC   75 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCE-----eeeeeeEEcCCccEEEEecC
Confidence            799999999999999999999999986432    334567889999999988877     99999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                       +++|.+++.+..  .+++..+..++.||+.||+|||++|++|+||||+||+++.++                       
T Consensus        76 ~~~~L~~~l~~~~--~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~-----------------------  130 (262)
T cd05572          76 LGGELWTILRDRG--LFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNG-----------------------  130 (262)
T ss_pred             CCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCC-----------------------
Confidence             999999998764  689999999999999999999999999999999999997655                       


Q ss_pred             CCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE--NLEHLAMM  330 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~--~~~~~~~i  330 (433)
                          .++|+|||.+......  .....|+..|+|||.+.+..++.++|+||||+++|+|++|..||....  .......+
T Consensus       131 ----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~  206 (262)
T cd05572         131 ----YVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDI  206 (262)
T ss_pred             ----CEEEeeCCcccccCcccccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHH
Confidence                4677777766544332  223468889999999988889999999999999999999999997665  22222222


Q ss_pred             HHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCC
Q 013941          331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER  410 (433)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  410 (433)
                      .....                      .                          .......+.++.++|.+||+.||++|
T Consensus       207 ~~~~~----------------------~--------------------------~~~~~~~~~~~~~~i~~~l~~~p~~R  238 (262)
T cd05572         207 LKGNG----------------------K--------------------------LEFPNYIDKAAKDLIKQLLRRNPEER  238 (262)
T ss_pred             hccCC----------------------C--------------------------CCCCcccCHHHHHHHHHHccCChhhC
Confidence            11000                      0                          00112235689999999999999999


Q ss_pred             CC-----HHHHhcCCCCCCC
Q 013941          411 LK-----AREALRHPFFTRD  425 (433)
Q Consensus       411 ~t-----a~ell~hp~f~~~  425 (433)
                      +|     ++|+++||||++-
T Consensus       239 ~~~~~~~~~~l~~~~~~~~~  258 (262)
T cd05572         239 LGNLKGGIKDIKKHKWFNGF  258 (262)
T ss_pred             cCCcccCHHHHhcChhhhCC
Confidence            99     9999999999863

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=6e-42  Score=319.72  Aligned_cols=276  Identities=34%  Similarity=0.605  Sum_probs=213.4

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      |++.+.||+|++|.||+|.+..+++.+++|.+....   .....+.+|+.+++++.|+++     +++++++.+++..++
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~~   75 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNI-----IKLLDVFRHKGDLYL   75 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCc-----chHHHhhccCCCEEE
Confidence            677899999999999999999999999999986533   234567789999999998877     999999999999999


Q ss_pred             EEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          171 VFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       171 v~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      ||||+.++|.+++.... ..+++..+..++.||+.||.|||++||+|+||||+||+++.++                   
T Consensus        76 v~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~-------------------  135 (283)
T cd05118          76 VFEFMDTDLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEG-------------------  135 (283)
T ss_pred             EEeccCCCHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCC-------------------
Confidence            99999779999887653 4789999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                              .++|+|||.+.......   ....++..|+|||.+.+. .++.++||||||+++|+|++|+.||...+..+.
T Consensus       136 --------~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~  207 (283)
T cd05118         136 --------VLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQ  207 (283)
T ss_pred             --------cEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                    45666666654433221   223578889999999876 789999999999999999999999998888777


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+....+......+..........     ....+..               .........+..+.++.+||.+||+.|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~l~~~  267 (283)
T cd05118         208 LFKIFRTLGTPDPEVWPKFTSLARNY-----KFSFPKK---------------AGMPLPKLFPNASPQALDLLSQMLHYD  267 (283)
T ss_pred             HHHHHHHcCCCchHhcccchhhhhhh-----hhhhccc---------------cccCHHHhhhhhCHHHHHHHHHHhccC
Confidence            77776665554332222211100000     0000000               000001122345789999999999999


Q ss_pred             CCCCCCHHHHhcCCCC
Q 013941          407 PAERLKAREALRHPFF  422 (433)
Q Consensus       407 P~~R~ta~ell~hp~f  422 (433)
                      |.+||++.++++||||
T Consensus       268 P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         268 PHKRITAEQALAHPYF  283 (283)
T ss_pred             cccCcCHHHHhhCCCC
Confidence            9999999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=4.2e-42  Score=318.08  Aligned_cols=245  Identities=20%  Similarity=0.272  Sum_probs=194.6

Q ss_pred             CCeEEeccccccccEEEEEEEec---CCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN---EKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||.||+|.+.   ..+..||+|+++...  .....+.+|+.++.++.|+++     +++++++..++
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~   79 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNI-----VRLEGVITRGN   79 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCc-----CeEEEEEecCC
Confidence            46999999999999999999765   456789999987542  334567889999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++||||+ +++|.+++.... ..+++..++.++.||+.||+|||++|++||||||+|||++.++.++           
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~-----------  147 (266)
T cd05064          80 TMMIVTEYMSNGALDSFLRKHE-GQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCK-----------  147 (266)
T ss_pred             CcEEEEEeCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEE-----------
Confidence            999999999 889999997653 3689999999999999999999999999999999999997766554           


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQT  320 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~  320 (433)
                                      ++|||.+.......    ....++..|+|||++.+..++.++|||||||++||+++ |..||..
T Consensus       148 ----------------l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~  211 (266)
T cd05064         148 ----------------ISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWD  211 (266)
T ss_pred             ----------------ECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCc
Confidence                            45554433221110    11234678999999999899999999999999999775 9999987


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ....+....+.+....                                                 .....++..+.+++.
T Consensus       212 ~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~li~  242 (266)
T cd05064         212 MSGQDVIKAVEDGFRL-------------------------------------------------PAPRNCPNLLHQLML  242 (266)
T ss_pred             CCHHHHHHHHHCCCCC-------------------------------------------------CCCCCCCHHHHHHHH
Confidence            7665544433221100                                                 011234668999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q 013941          401 GLLRYDPAERLKAREALR  418 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~  418 (433)
                      +||+.+|++|||++++++
T Consensus       243 ~c~~~~p~~RP~~~~i~~  260 (266)
T cd05064         243 DCWQKERGERPRFSQIHS  260 (266)
T ss_pred             HHcCCCchhCCCHHHHHH
Confidence            999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-43  Score=300.84  Aligned_cols=254  Identities=25%  Similarity=0.382  Sum_probs=203.7

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ..+.+..||.|+.|.||+++.+.+|...|||.+++..  ...+.++..+.++..-.    ..+.||+.+++|..+..+++
T Consensus        93 dl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~----dcpyIV~c~GyFi~n~dV~I  168 (391)
T KOG0983|consen   93 DLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSH----DCPYIVQCFGYFITNTDVFI  168 (391)
T ss_pred             HhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhcc----CCCeeeeeeeEEeeCchHHH
Confidence            4567889999999999999999999999999998643  33345556666654443    23566999999999999999


Q ss_pred             EEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      .||.|...+..++..-. +.++|..+-++...++.||.||-+ +||||||+||+|||++..|                  
T Consensus       169 cMelMs~C~ekLlkrik-~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~G------------------  229 (391)
T KOG0983|consen  169 CMELMSTCAEKLLKRIK-GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERG------------------  229 (391)
T ss_pred             HHHHHHHHHHHHHHHhc-CCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCC------------------
Confidence            99999777777776544 479999999999999999999995 5899999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCC---CCCccchHHHHHHHHHHHHhCCCCCCCCC-h
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALFQTHE-N  323 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~---~~~~~~DiwSlG~il~el~~g~~pf~~~~-~  323 (433)
                               .+||||||++...-+.  .+...|.+.|||||.+.-.   .|+.++||||||++++||.||+.||.+.+ +
T Consensus       230 ---------niKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~td  300 (391)
T KOG0983|consen  230 ---------NIKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTD  300 (391)
T ss_pred             ---------CEEeecccccceeecccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCcc
Confidence                     6788888888765433  3446899999999998643   58899999999999999999999998854 4


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+.+..+.+.   .|+.+                                            ......|+.+++|+..||
T Consensus       301 Fe~ltkvln~---ePP~L--------------------------------------------~~~~gFSp~F~~fv~~CL  333 (391)
T KOG0983|consen  301 FEVLTKVLNE---EPPLL--------------------------------------------PGHMGFSPDFQSFVKDCL  333 (391)
T ss_pred             HHHHHHHHhc---CCCCC--------------------------------------------CcccCcCHHHHHHHHHHh
Confidence            5556555442   22110                                            011235889999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCC
Q 013941          404 RYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ++|+.+||...++|+|||+..-
T Consensus       334 ~kd~r~RP~Y~~Ll~h~Fi~~y  355 (391)
T KOG0983|consen  334 TKDHRKRPKYNKLLEHPFIKRY  355 (391)
T ss_pred             hcCcccCcchHHHhcCcceeec
Confidence            9999999999999999998753

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=8.4e-42  Score=321.96  Aligned_cols=283  Identities=30%  Similarity=0.517  Sum_probs=212.6

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      |+...++|++.+.||+|+||.||+|.+..+++.||+|+++...   .......+|+.++++++|+++     +++++++.
T Consensus         2 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i-----~~~~~~~~   76 (302)
T cd07864           2 GKRCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNI-----VNLKEIVT   76 (302)
T ss_pred             chhhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCe-----eeeeheec
Confidence            3445678999999999999999999999999999999986432   233456789999999988877     99888876


Q ss_pred             cCC----------eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcc
Q 013941          164 YRN----------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYV  233 (433)
Q Consensus       164 ~~~----------~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~  233 (433)
                      +..          .+++||||++++|.+++.... ..+++..++.++.||+.||+|||+.||+||||||+||++++++. 
T Consensus        77 ~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~-  154 (302)
T cd07864          77 DKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGL-VHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQ-  154 (302)
T ss_pred             CcchhhhccccCCcEEEEEcccCccHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCc-
Confidence            544          899999999778888877542 46899999999999999999999999999999999999976654 


Q ss_pred             cccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCC-CCCccchHHHHHHHH
Q 013941          234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCIL  308 (433)
Q Consensus       234 ~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il  308 (433)
                                                +||+|||.+.......    ....++..|+|||++.+. .++.++|||||||++
T Consensus       155 --------------------------~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~  208 (302)
T cd07864         155 --------------------------IKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCIL  208 (302)
T ss_pred             --------------------------EEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHH
Confidence                                      5666666554332211    123457789999988754 578999999999999


Q ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          309 VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       309 ~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      |+|++|++||...+....+..+.+..+..+...+.......          .+......+          ..........
T Consensus       209 ~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~----------~~~~~~~~~~  268 (302)
T cd07864         209 GELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLP----------YFNTMKPKK----------QYRRRLREEF  268 (302)
T ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccccc----------ccccccccc----------ccccchhhhc
Confidence            99999999999888888888887776655432211110000          000000000          0000011112


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ...+..+.++|.+||+.||++|||+.++++||||
T Consensus       269 ~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         269 SFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             CCCCHHHHHHHHHHccCChhhCCCHHHHhcCCCC
Confidence            3457789999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=2.9e-42  Score=321.06  Aligned_cols=252  Identities=27%  Similarity=0.438  Sum_probs=204.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ..|+.++.||.|+||.||+|.+..+++.||+|++....  .....+.+|+.+++++.|+++     +++++.+.+++..|
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~   78 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV-----TKYYGSYLKGTKLW   78 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEEECCEEE
Confidence            45889999999999999999999999999999987432  334567789999999988777     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++...   .+++..+..++.|++.||+|||+++++|+||+|+||+++.++.                
T Consensus        79 lv~e~~~~~~L~~~i~~~---~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~----------------  139 (277)
T cd06640          79 IIMEYLGGGSALDLLRAG---PFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGD----------------  139 (277)
T ss_pred             EEEecCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCC----------------
Confidence            999999 99999998753   5899999999999999999999999999999999999976654                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                 ++|+|||++......   .....++..|+|||++.+..++.++|+|||||++|+|++|..||.......
T Consensus       140 -----------~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~  208 (277)
T cd06640         140 -----------VKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMR  208 (277)
T ss_pred             -----------EEEcccccceeccCCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHh
Confidence                       566666655432221   122467889999999998889999999999999999999999997655443


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+...  ..|                                               ......+..+.++|.+||+.
T Consensus       209 ~~~~~~~~--~~~-----------------------------------------------~~~~~~~~~~~~li~~~l~~  239 (277)
T cd06640         209 VLFLIPKN--NPP-----------------------------------------------TLTGEFSKPFKEFIDACLNK  239 (277)
T ss_pred             HhhhhhcC--CCC-----------------------------------------------CCchhhhHHHHHHHHHHccc
Confidence            32221110  000                                               01123456889999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCcc
Q 013941          406 DPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      +|++||++.++++|+||.+...
T Consensus       240 ~p~~Rp~~~~il~~~~~~~~~~  261 (277)
T cd06640         240 DPSFRPTAKELLKHKFIVKNAK  261 (277)
T ss_pred             CcccCcCHHHHHhChHhhhcch
Confidence            9999999999999999987644

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=6e-42  Score=318.04  Aligned_cols=252  Identities=26%  Similarity=0.421  Sum_probs=198.9

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-----------hhHHHHHHHHHHHHHHHhCCCCCcceeEecce
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-----------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNW  161 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~  161 (433)
                      +|.+.+.||+|+||.||+|.+..+++.||+|.++...           ...+.+..|+.+++.+.|+++     ++++++
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~   76 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNI-----VQYLGF   76 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCc-----ceEEEE
Confidence            5889999999999999999999999999999875311           112356779999999988877     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      +...+..++||||+ +++|.+++....  .+++..++.++.||+.||.|||++|++||||||+||+++.++.        
T Consensus        77 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~--------  146 (272)
T cd06629          77 ETTEEYLSIFLEYVPGGSIGSCLRTYG--RFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGI--------  146 (272)
T ss_pred             eccCCceEEEEecCCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCe--------
Confidence            99999999999999 999999998764  7899999999999999999999999999999999999976664        


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCC--CCccchHHHHHHHHHHHHh
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLG--WNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~--~~~~~DiwSlG~il~el~~  313 (433)
                                         ++|+|||++......     .....|+..|+|||++....  ++.++|+||||+++|++++
T Consensus       147 -------------------~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~  207 (272)
T cd06629         147 -------------------CKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFA  207 (272)
T ss_pred             -------------------EEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHh
Confidence                               556666655432211     12246788999999988754  7899999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      |..||...........+.....                      ...+                      .......++.
T Consensus       208 g~~p~~~~~~~~~~~~~~~~~~----------------------~~~~----------------------~~~~~~~~~~  243 (272)
T cd06629         208 GRRPWSDEEAIAAMFKLGNKRS----------------------APPI----------------------PPDVSMNLSP  243 (272)
T ss_pred             CCCCCcCcchHHHHHHhhcccc----------------------CCcC----------------------CccccccCCH
Confidence            9999975544332221110000                      0000                      0011123467


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      .+.++|.+||..||++|||++++++||||
T Consensus       244 ~~~~li~~~l~~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         244 VALDFLNACFTINPDNRPTARELLQHPFI  272 (272)
T ss_pred             HHHHHHHHHhcCChhhCCCHHHHhhCCCC
Confidence            89999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=1.7e-42  Score=330.56  Aligned_cols=304  Identities=17%  Similarity=0.204  Sum_probs=203.4

Q ss_pred             cccccc--ccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEG--TFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G--~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      ..||+|  +||+||+|++..+++.||+|++....   ...+.+.+|+.+++.++|+|+     +++++++..++..++||
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~ni-----v~~~~~~~~~~~~~~v~   78 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNI-----MTSWTVFTTGSWLWVIS   78 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCc-----ceEeeeEecCCceEEEE
Confidence            467777  99999999999999999999986432   234567789999888888887     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++.......+++..+..++.||+.||+|||++||+||||||+|||++.++.++++||+.+......+.  
T Consensus        79 e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~--  156 (328)
T cd08226          79 PFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQ--  156 (328)
T ss_pred             ecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCc--
Confidence            999 88999999876545699999999999999999999999999999999999999888777777764322211110  


Q ss_pred             cCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC--CCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM  329 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~  329 (433)
                                     .............++..|+|||++.+.  .++.++|||||||++|+|++|..||...........
T Consensus       157 ---------------~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~  221 (328)
T cd08226         157 ---------------KAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQ  221 (328)
T ss_pred             ---------------cccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHH
Confidence                           000000011112456679999999764  478999999999999999999999987665443332


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAE  409 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  409 (433)
                      ........|............ .. .. ...+..............................+..+.+||.+||+.||++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~  298 (328)
T cd08226         222 KLKGPPYSPLDITTFPCEESR-MK-NS-QSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEK  298 (328)
T ss_pred             HhcCCCCCCccccccchhhhh-hc-cc-hhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCccc
Confidence            222111111100000000000 00 00 0000000000000000000000000011112345678999999999999999


Q ss_pred             CCCHHHHhcCCCCCCCc
Q 013941          410 RLKAREALRHPFFTRDV  426 (433)
Q Consensus       410 R~ta~ell~hp~f~~~~  426 (433)
                      |||+.|+++||||.+..
T Consensus       299 Rpta~e~l~~~~~~~~~  315 (328)
T cd08226         299 RPSASSLLSHAFFKQVK  315 (328)
T ss_pred             CCCHHHHhhCHHHHHHH
Confidence            99999999999998653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=5e-42  Score=320.39  Aligned_cols=277  Identities=32%  Similarity=0.586  Sum_probs=213.3

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccchh--hHHHHHHHHHHHHHHH-hCCCCCcceeEecceeccCCeEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      |++.+.||+|++|+||+|++..+++.||||.+.....  ......+|+..+.++. |+++     +++++++..++..++
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i-----~~~~~~~~~~~~~~l   75 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNI-----VKLKEVFRENDELYF   75 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCc-----hhHHHHhhcCCcEEE
Confidence            6788999999999999999988999999999864322  2233456888888888 7777     999999999999999


Q ss_pred             EEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          171 VFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       171 v~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      ||||++++|.+++.......+++..+..++.||+.||.|||++||+|+||+|+||+++.++                   
T Consensus        76 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~-------------------  136 (283)
T cd07830          76 VFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPE-------------------  136 (283)
T ss_pred             EEecCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCC-------------------
Confidence            9999988999998876545789999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL  327 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~  327 (433)
                              .++|+|||.+.......  ....++..|+|||++.+ ..++.++|+||||+++|+|++|..||......+..
T Consensus       137 --------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~  208 (283)
T cd07830         137 --------VVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQL  208 (283)
T ss_pred             --------CEEEeecccceeccCCCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHH
Confidence                    46666776665433221  23467889999998854 45789999999999999999999999988888888


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP  407 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  407 (433)
                      ..+....+.++...+..........     ...++...               ...........+..+.+||.+||+.||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---------------~~~~~~~~~~~~~~~~~li~~cl~~~p  268 (283)
T cd07830         209 YKICSVLGTPTKQDWPEGYKLASKL-----GFRFPQFA---------------PTSLHQLIPNASPEAIDLIKDMLRWDP  268 (283)
T ss_pred             HHHHHhcCCCChhhhhhHhhhhccc-----cccccccc---------------cccHHHHcccCCHHHHHHHHHhcccCc
Confidence            8888777766554332221111000     00000000               000011112236789999999999999


Q ss_pred             CCCCCHHHHhcCCCC
Q 013941          408 AERLKAREALRHPFF  422 (433)
Q Consensus       408 ~~R~ta~ell~hp~f  422 (433)
                      ++|||++|++.||||
T Consensus       269 ~~Rpt~~ei~~~~~~  283 (283)
T cd07830         269 KKRPTASQALQHPYF  283 (283)
T ss_pred             ccCCCHHHHhhCCCC
Confidence            999999999999998

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-41  Score=317.37  Aligned_cols=277  Identities=32%  Similarity=0.565  Sum_probs=205.9

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe---
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH---  167 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~---  167 (433)
                      |++.+.||+|+||.||+|++..+++.||+|+++...   .......+|+.+++++.  .+.|++++++++++...+.   
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~--~~~h~~i~~~~~~~~~~~~~~~   78 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLE--SFEHPNIVRLLDVCHGPRTDRE   78 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhh--ccCCCCcceEEEEEeeccCCCC
Confidence            678999999999999999998889999999987422   22344567888887775  1123444999999887665   


Q ss_pred             --EEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          168 --ICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       168 --~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                        ++++|||+.++|.+++.......+++..++.++.||+.||.|||+.||+|+||+|+||+++.++              
T Consensus        79 ~~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~--------------  144 (287)
T cd07838          79 LKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDG--------------  144 (287)
T ss_pred             ceeEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCC--------------
Confidence              9999999977999998775544699999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                   .++|+|||.+.......  ....++..|+|||++.+..++.++|||||||++|+|++|.+||.+...
T Consensus       145 -------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~  211 (287)
T cd07838         145 -------------QVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSE  211 (287)
T ss_pred             -------------CEEEeccCcceeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCCh
Confidence                         46666666665432221  223578899999999998899999999999999999999999998887


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+....+..........                   .|+.......   ..+.. .............+..+.++|.+||
T Consensus       212 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l  268 (287)
T cd07838         212 ADQLDKIFDVIGLPSEE-------------------EWPRNVSLPR---SSFPS-YTPRSFKSFVPEICEEGLDLLKKML  268 (287)
T ss_pred             HHHHHHHHHHcCCCChH-------------------hcCCCcccch---hhccc-ccccchhhhhhhhhHHHHHHHHHHh
Confidence            77666665543322110                   1111000000   00000 0000001112244678899999999


Q ss_pred             ccCCCCCCCHHHHhcCCCC
Q 013941          404 RYDPAERLKAREALRHPFF  422 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f  422 (433)
                      +.||++||+++|+++||||
T Consensus       269 ~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         269 TFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             ccCCccCCCHHHHhcCcCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=6.7e-43  Score=325.38  Aligned_cols=252  Identities=28%  Similarity=0.439  Sum_probs=202.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +.|++.+.||+|+||.||+|.+..+++.||+|.+...  ....+.+.+|+.+++++.|+++     +++++.+..++..|
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~   78 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYI-----TRYYGSYLKGTKLW   78 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCcc-----HhhhcccccCCceE
Confidence            4588889999999999999999999999999998743  2334567889999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++...   .+++..++.++.||+.||.|||++||+|+||+|+||+++.++.                
T Consensus        79 lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~----------------  139 (277)
T cd06642          79 IIMEYLGGGSALDLLKPG---PLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGD----------------  139 (277)
T ss_pred             EEEEccCCCcHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCC----------------
Confidence            999999 89999988653   5899999999999999999999999999999999999976654                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                 ++|+|||++......   .....|+..|+|||++.+..++.++|||||||++|+|++|..||.......
T Consensus       140 -----------~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~  208 (277)
T cd06642         140 -----------VKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR  208 (277)
T ss_pred             -----------EEEccccccccccCcchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh
Confidence                       566666665433221   122467889999999998889999999999999999999999997544332


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+...  ..                                               .......+.++.++|.+||+.
T Consensus       209 ~~~~~~~~--~~-----------------------------------------------~~~~~~~~~~~~~li~~~l~~  239 (277)
T cd06642         209 VLFLIPKN--SP-----------------------------------------------PTLEGQYSKPFKEFVEACLNK  239 (277)
T ss_pred             HHhhhhcC--CC-----------------------------------------------CCCCcccCHHHHHHHHHHccC
Confidence            22111000  00                                               001123456899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCcc
Q 013941          406 DPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      +|++|||+.++++||||.....
T Consensus       240 ~p~~Rp~~~~il~~~~~~~~~~  261 (277)
T cd06642         240 DPRFRPTAKELLKHKFITRYTK  261 (277)
T ss_pred             CcccCcCHHHHHHhHHHHHHhh
Confidence            9999999999999999986443

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=7e-42  Score=323.31  Aligned_cols=256  Identities=24%  Similarity=0.371  Sum_probs=205.6

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      .....+|++.+.||+|+||.||+|.+..+++.||+|++....    .....+.+|+.+++.++|+|+     +++++++.
T Consensus        11 ~~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~ni-----v~~~~~~~   85 (307)
T cd06607          11 DDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNT-----IEYKGCYL   85 (307)
T ss_pred             CCcchhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCE-----EEEEEEEE
Confidence            444567999999999999999999999999999999986322    233567789999999988877     99999999


Q ss_pred             cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          164 YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       164 ~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ..+..|+||||+.++|.+++.... ..+++..+..++.||+.||.|||++||+||||+|+||+++.++            
T Consensus        86 ~~~~~~lv~e~~~g~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~------------  152 (307)
T cd06607          86 REHTAWLVMEYCLGSASDILEVHK-KPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPG------------  152 (307)
T ss_pred             eCCeEEEEHHhhCCCHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCC------------
Confidence            999999999999888888876543 3689999999999999999999999999999999999997655            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhh---CCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                     .++|+|||++...... ....|+..|+|||++.   ...++.++||||||+++|+|++|..||..
T Consensus       153 ---------------~~kL~dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~  216 (307)
T cd06607         153 ---------------TVKLADFGSASLVSPA-NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN  216 (307)
T ss_pred             ---------------CEEEeecCcceecCCC-CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCC
Confidence                           4677777766543322 2346888999999875   34688999999999999999999999977


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+.......+...  ..+.                     .                         ....++..+.++|.
T Consensus       217 ~~~~~~~~~~~~~--~~~~---------------------~-------------------------~~~~~~~~~~~li~  248 (307)
T cd06607         217 MNAMSALYHIAQN--DSPT---------------------L-------------------------SSNDWSDYFRNFVD  248 (307)
T ss_pred             ccHHHHHHHHhcC--CCCC---------------------C-------------------------CchhhCHHHHHHHH
Confidence            6554433222110  0000                     0                         00123568999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||..||++||++.+++.||||...
T Consensus       249 ~~l~~~p~~Rp~~~~il~~~~~~~~  273 (307)
T cd06607         249 SCLQKIPQDRPSSEELLKHRFVLRE  273 (307)
T ss_pred             HHhcCChhhCcCHHHHhcChhhccc
Confidence            9999999999999999999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=3.3e-42  Score=323.89  Aligned_cols=251  Identities=24%  Similarity=0.431  Sum_probs=202.9

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      |.....||+|+||.||+|.+..+++.||+|.+.... ...+.+.+|+.++..+.|+++     +++++.+..++..|+||
T Consensus        23 ~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i-----~~~~~~~~~~~~~~iv~   97 (297)
T cd06659          23 LENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNV-----VEMYKSYLVGEELWVLM   97 (297)
T ss_pred             HHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCch-----hhhhhheeeCCeEEEEE
Confidence            555678999999999999999999999999986432 334567789999999988877     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++...   .+++..++.++.||+.||.|||++||+||||||+||+++.++                    
T Consensus        98 e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~--------------------  154 (297)
T cd06659          98 EFLQGGALTDIVSQT---RLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDG--------------------  154 (297)
T ss_pred             ecCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCC--------------------
Confidence            999 89999887653   589999999999999999999999999999999999997665                    


Q ss_pred             cCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                             .++|+|||++.....   ......|+..|+|||++.+..++.++|||||||++|||++|..||..........
T Consensus       155 -------~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~  227 (297)
T cd06659         155 -------RVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMK  227 (297)
T ss_pred             -------cEEEeechhHhhcccccccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence                   456666665543221   1223478899999999998889999999999999999999999998766554443


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+...   .+.                                            ........+..+.++|.+||+.+|+
T Consensus       228 ~~~~~---~~~--------------------------------------------~~~~~~~~~~~l~~~i~~~l~~~P~  260 (297)
T cd06659         228 RLRDS---PPP--------------------------------------------KLKNAHKISPVLRDFLERMLTREPQ  260 (297)
T ss_pred             HHhcc---CCC--------------------------------------------CccccCCCCHHHHHHHHHHhcCCcc
Confidence            32211   000                                            0001123466889999999999999


Q ss_pred             CCCCHHHHhcCCCCCCCc
Q 013941          409 ERLKAREALRHPFFTRDV  426 (433)
Q Consensus       409 ~R~ta~ell~hp~f~~~~  426 (433)
                      +||+++++++||||.+..
T Consensus       261 ~Rps~~~ll~~~~~~~~~  278 (297)
T cd06659         261 ERATAQELLDHPFLLQTG  278 (297)
T ss_pred             cCcCHHHHhhChhhccCC
Confidence            999999999999999763

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1.2e-41  Score=318.27  Aligned_cols=253  Identities=27%  Similarity=0.448  Sum_probs=204.2

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      .|...+.||+|++|.||++.+..+++.+++|++.... ...+.+.+|+.+++.+.|+++     +++++++...+..++|
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~v-----v~~~~~~~~~~~~~~v   94 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNI-----VEMYSSYLVGDELWVV   94 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCCh-----heEEEEEEcCCeEEEE
Confidence            4666789999999999999999999999999886433 334557789999999988877     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      +||+ +++|.+++...   .+++..+..++.||+.||+|||++||+||||||+||+++.++.                  
T Consensus        95 ~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~------------------  153 (285)
T cd06648          95 MEFLEGGALTDIVTHT---RMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGR------------------  153 (285)
T ss_pred             EeccCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCc------------------
Confidence            9999 99999998773   5899999999999999999999999999999999999976664                  


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL  327 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~  327 (433)
                               ++|+|||.+......   .....|+..|+|||.+.+..++.++|||||||++|+|++|..||...+.....
T Consensus       154 ---------~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~~  224 (285)
T cd06648         154 ---------VKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQAM  224 (285)
T ss_pred             ---------EEEcccccchhhccCCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHHH
Confidence                     556666654432211   12246889999999998888999999999999999999999999776554443


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP  407 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  407 (433)
                      ..+....   +.                                            .......++..+.+||.+||+.||
T Consensus       225 ~~~~~~~---~~--------------------------------------------~~~~~~~~~~~l~~li~~~l~~~p  257 (285)
T cd06648         225 KRIRDNL---PP--------------------------------------------KLKNLHKVSPRLRSFLDRMLVRDP  257 (285)
T ss_pred             HHHHhcC---CC--------------------------------------------CCcccccCCHHHHHHHHHHcccCh
Confidence            3332210   00                                            000112246689999999999999


Q ss_pred             CCCCCHHHHhcCCCCCCCcc
Q 013941          408 AERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       408 ~~R~ta~ell~hp~f~~~~~  427 (433)
                      ++|||+.++++||||++...
T Consensus       258 ~~Rpt~~~il~~~~~~~~~~  277 (285)
T cd06648         258 AQRATAAELLNHPFLAKAGP  277 (285)
T ss_pred             hhCcCHHHHccCcccccCCC
Confidence            99999999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=1.2e-41  Score=317.06  Aligned_cols=249  Identities=25%  Similarity=0.384  Sum_probs=190.5

Q ss_pred             cccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEcc
Q 013941           99 KMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEK  174 (433)
Q Consensus        99 ~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~  174 (433)
                      .||+|+||.||+|.+..+++.||+|.+....    ........|..+++.+++.  .|++++.+++.+...+..|+||||
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~v~e~   78 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG--DCPFIVCMSYAFHTPDKLSFILDL   78 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhC--CCCcEeeeeeeeecCCEEEEEEec
Confidence            4899999999999999999999999986432    1122234455555544432  345669999999999999999999


Q ss_pred             C-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccC
Q 013941          175 L-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN  253 (433)
Q Consensus       175 ~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~  253 (433)
                      + |++|.+++....  .+++..++.++.|++.||.|||+++|+||||||+||+++.++.                     
T Consensus        79 ~~g~~L~~~l~~~~--~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~---------------------  135 (278)
T cd05606          79 MNGGDLHYHLSQHG--VFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGH---------------------  135 (278)
T ss_pred             CCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCC---------------------
Confidence            9 999999887654  6999999999999999999999999999999999999976554                     


Q ss_pred             CCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q 013941          254 LPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMME  331 (433)
Q Consensus       254 ~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~  331 (433)
                            ++|+|||++..... ......|+..|+|||++.+. .++.++||||+||++|+|++|..||.............
T Consensus       136 ------~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~  209 (278)
T cd05606         136 ------VRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR  209 (278)
T ss_pred             ------EEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHH
Confidence                  56666666543221 12234789999999999754 68999999999999999999999997653222111110


Q ss_pred             HHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCC
Q 013941          332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL  411 (433)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~  411 (433)
                      .....                                               ........+.++.++|.+||..||++|+
T Consensus       210 ~~~~~-----------------------------------------------~~~~~~~~s~~~~~li~~~l~~~p~~R~  242 (278)
T cd05606         210 MTLTM-----------------------------------------------AVELPDSFSPELRSLLEGLLQRDVNRRL  242 (278)
T ss_pred             Hhhcc-----------------------------------------------CCCCCCcCCHHHHHHHHHHhhcCHHhcc
Confidence            00000                                               0011123467899999999999999999


Q ss_pred             -----CHHHHhcCCCCCCC
Q 013941          412 -----KAREALRHPFFTRD  425 (433)
Q Consensus       412 -----ta~ell~hp~f~~~  425 (433)
                           ++.++++||||++.
T Consensus       243 ~~~~~~~~~ll~~~~~~~~  261 (278)
T cd05606         243 GCLGRGAQEVKEHPFFRSL  261 (278)
T ss_pred             CCCCCCHHHHHhCccccCC
Confidence                 99999999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=8.9e-42  Score=314.09  Aligned_cols=248  Identities=29%  Similarity=0.474  Sum_probs=201.5

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      +|+..+.||+|+||.||+|.+..+++.|++|.+....      ...+.+.+|+.+++.++|+++     +++++++..++
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----~~~~~~~~~~~   75 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNI-----VQYLGTEREED   75 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCc-----hheeeeEecCC
Confidence            4788899999999999999998899999999986432      234567789999999988887     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+++||||+ +++|.+++.+..  .+++..+..++.||+.||+|||+.||+|+||+|+||+++.++              
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~--------------  139 (258)
T cd06632          76 NLYIFLELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNG--------------  139 (258)
T ss_pred             eEEEEEEecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC--------------
Confidence            999999999 889999998764  689999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCC-CCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   .+||+|||.+......  .....|+..|+|||.+.... ++.++|+|||||++|+|++|..||....
T Consensus       140 -------------~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~  206 (258)
T cd06632         140 -------------VVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE  206 (258)
T ss_pred             -------------CEEEccCccceeccccccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc
Confidence                         4566666655433222  23356888999999998776 8999999999999999999999997655


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      .......+... ...                                               ......++.++.++|.+|
T Consensus       207 ~~~~~~~~~~~-~~~-----------------------------------------------~~~~~~~~~~~~~li~~~  238 (258)
T cd06632         207 GVAAVFKIGRS-KEL-----------------------------------------------PPIPDHLSDEAKDFILKC  238 (258)
T ss_pred             HHHHHHHHHhc-ccC-----------------------------------------------CCcCCCcCHHHHHHHHHH
Confidence            33322222110 000                                               011233467899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCC
Q 013941          403 LRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f  422 (433)
                      |+.+|++|||+.+++.|||+
T Consensus       239 l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         239 LQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             hhcCcccCcCHHHHhcCCCC
Confidence            99999999999999999997

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=9.1e-42  Score=314.85  Aligned_cols=245  Identities=21%  Similarity=0.358  Sum_probs=198.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|+++++||+|+||.||+|.+. ++..||+|.+.......+.+.+|+.+++.++|+++     +++++.+...+..++|
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~-~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~lv   79 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKL-----VRLYAVVTKEEPIYII   79 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEec-CCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCe-----eeEEEEEcCCCCcEEE
Confidence            56999999999999999999864 55679999987655556778899999999988877     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.......+++..+..++.||+.||+|||+.|++||||||+||+++.++.                  
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~------------------  141 (261)
T cd05072          80 TEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLM------------------  141 (261)
T ss_pred             EecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCc------------------
Confidence            9999 899999998765557899999999999999999999999999999999999976664                  


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                               ++|+|||.+.......    ....++..|+|||++.+..++.++|||||||++|+|++ |..||.+.....
T Consensus       142 ---------~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~  212 (261)
T cd05072         142 ---------CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNSD  212 (261)
T ss_pred             ---------EEECCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHHH
Confidence                     5566666554432211    11245678999999988889999999999999999998 999998766554


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+..... .                                                .....++.++.+++.+||..
T Consensus       213 ~~~~~~~~~~-~------------------------------------------------~~~~~~~~~~~~li~~~l~~  243 (261)
T cd05072         213 VMSALQRGYR-M------------------------------------------------PRMENCPDELYDIMKTCWKE  243 (261)
T ss_pred             HHHHHHcCCC-C------------------------------------------------CCCCCCCHHHHHHHHHHccC
Confidence            4433322110 0                                                01123466899999999999


Q ss_pred             CCCCCCCHHHHhc
Q 013941          406 DPAERLKAREALR  418 (433)
Q Consensus       406 dP~~R~ta~ell~  418 (433)
                      ||++|||++++++
T Consensus       244 ~p~~Rp~~~~i~~  256 (261)
T cd05072         244 KAEERPTFDYLQS  256 (261)
T ss_pred             CcccCcCHHHHHH
Confidence            9999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=8.7e-42  Score=326.95  Aligned_cols=291  Identities=32%  Similarity=0.474  Sum_probs=214.5

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ..+.++|++.+.||+|+||.||+|.+..+++.+|+|.+...   ......+.+|+.++.++ +|+|+     +++++++.
T Consensus         3 ~~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni-----~~~~~~~~   77 (337)
T cd07852           3 KHILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNI-----VKLLNVIK   77 (337)
T ss_pred             chhhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCc-----cceeeeec
Confidence            34567899999999999999999999989999999987532   23334567899999999 88887     99999875


Q ss_pred             c--CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          164 Y--RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       164 ~--~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      .  ....|+||||++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+||+++.++.++|+|||++
T Consensus        78 ~~~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~  154 (337)
T cd07852          78 AENDKDIYLVFEYMETDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLA  154 (337)
T ss_pred             cCCCceEEEEecccccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccch
Confidence            4  4478999999977999988764   5889999999999999999999999999999999999987765544444433


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                      .........                   ..........||..|+|||++.+ ..++.++|||||||++|+|++|+.||.+
T Consensus       155 ~~~~~~~~~-------------------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~  215 (337)
T cd07852         155 RSLSELEEN-------------------PENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPG  215 (337)
T ss_pred             hcccccccc-------------------ccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCC
Confidence            222111000                   00011122468899999998765 4578999999999999999999999998


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhh-hhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEK-YFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ....+....+....+..+...+......... .....                   ...... .........+.++.++|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~-~~~~~~~~~~~~l~~li  275 (337)
T cd07852         216 TSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSL-------------------PSRPRK-PLDELLPKASDDALDLL  275 (337)
T ss_pred             CChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhc-------------------cccccc-chhhhccCCCHHHHHHH
Confidence            8887777777776665554332222111100 00000                   000000 01112233678999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          400 QGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .+||+.||++|||+.++++||||++-
T Consensus       276 ~~~l~~~P~~Rps~~~il~~~~~~~~  301 (337)
T cd07852         276 KKLLVFNPNKRLTAEEALEHPYVAQF  301 (337)
T ss_pred             HHhccCCcccccCHHHHhhChhhhhh
Confidence            99999999999999999999999875

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=7.5e-42  Score=331.43  Aligned_cols=248  Identities=25%  Similarity=0.372  Sum_probs=192.4

Q ss_pred             CCeEEeccccccccEEEEEEEe-----cCCCcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~-----~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ++|++.+.||+|+||.||+|++     ..++..||||+++...  ...+.+.+|+.++..+ .|+||     +++++++.
T Consensus        35 ~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnI-----v~l~~~~~  109 (375)
T cd05104          35 NRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINI-----VNLLGACT  109 (375)
T ss_pred             HHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcce-----eeeeeeec
Confidence            4799999999999999999974     3466789999986432  3345678899999999 67777     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcC-------------------------------------------------------
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNS-------------------------------------------------------  187 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~-------------------------------------------------------  187 (433)
                      .++..++||||| +|+|.+++....                                                       
T Consensus       110 ~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  189 (375)
T cd05104         110 VGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSV  189 (375)
T ss_pred             cCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccc
Confidence            999999999999 999999986532                                                       


Q ss_pred             ------------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          188 ------------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       188 ------------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                                        ...+++..+..++.||+.||+|||++||+||||||+|||++.++.                 
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~-----------------  252 (375)
T cd05104         190 RSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRI-----------------  252 (375)
T ss_pred             ccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCc-----------------
Confidence                              124778889999999999999999999999999999999976554                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCCh
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHEN  323 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~  323 (433)
                                ++|+|||++.......     ....++..|+|||++.+..++.++|||||||++|||++ |..||.....
T Consensus       253 ----------~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~  322 (375)
T cd05104         253 ----------TKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPV  322 (375)
T ss_pred             ----------EEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc
Confidence                      5666666654332211     11234567999999999899999999999999999998 8999976543


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+...                      +..                          .......+.++.+||.+||
T Consensus       323 ~~~~~~~~~~----------------------~~~--------------------------~~~~~~~~~~l~~li~~cl  354 (375)
T cd05104         323 DSKFYKMIKE----------------------GYR--------------------------MLSPECAPSEMYDIMKSCW  354 (375)
T ss_pred             hHHHHHHHHh----------------------Ccc--------------------------CCCCCCCCHHHHHHHHHHc
Confidence            3322211110                      000                          0001223568999999999


Q ss_pred             ccCCCCCCCHHHHhcC
Q 013941          404 RYDPAERLKAREALRH  419 (433)
Q Consensus       404 ~~dP~~R~ta~ell~h  419 (433)
                      +.||++|||+.||++.
T Consensus       355 ~~dP~~RPs~~eil~~  370 (375)
T cd05104         355 DADPLKRPTFKQIVQL  370 (375)
T ss_pred             cCChhHCcCHHHHHHH
Confidence            9999999999999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.3e-41  Score=316.64  Aligned_cols=265  Identities=23%  Similarity=0.363  Sum_probs=202.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--CCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--RNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--~~~  167 (433)
                      ++|+..++||.|++|.||+|.+..+++.||+|.+....  .....+.+|+++++++.|+++     +++++++..  .+.
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~~~   75 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYI-----VKYYGAFLDESSSS   75 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCe-----eeeeeEEEccCCCe
Confidence            36999999999999999999999999999999987533  345668889999999988887     999998754  457


Q ss_pred             EEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          168 ICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +|+||||+ +++|.+++...  ....+++..+..++.||+.||.|||+.|++|+||+|+||+++.++             
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~-------------  142 (287)
T cd06621          76 IGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKG-------------  142 (287)
T ss_pred             EEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCC-------------
Confidence            99999999 89999887532  224689999999999999999999999999999999999997655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                    .++|+|||++...... .....++..|+|||.+.+..++.++|||||||++|+|++|..||.....
T Consensus       143 --------------~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~  208 (287)
T cd06621         143 --------------QVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGE  208 (287)
T ss_pred             --------------eEEEeeccccccccccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccC
Confidence                          4666777765433221 1234678889999999988899999999999999999999999976522


Q ss_pred             --HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          324 --LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       324 --~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                        .................                    .+                    .........+..+.+||.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~--------------------~~--------------------~~~~~~~~~~~~~~~li~~  248 (287)
T cd06621         209 PPLGPIELLSYIVNMPNPE--------------------LK--------------------DEPGNGIKWSEEFKDFIKQ  248 (287)
T ss_pred             CCCChHHHHHHHhcCCchh--------------------hc--------------------cCCCCCCchHHHHHHHHHH
Confidence              00111111100000000                    00                    0000001235689999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      ||..||++|||+.|+++||||++..++
T Consensus       249 ~l~~~p~~Rpt~~eil~~~~~~~~~~~  275 (287)
T cd06621         249 CLEKDPTRRPTPWDMLEHPWIKAQMKK  275 (287)
T ss_pred             HcCCCcccCCCHHHHHhCccccccccc
Confidence            999999999999999999999876543

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=9e-42  Score=352.11  Aligned_cols=144  Identities=22%  Similarity=0.380  Sum_probs=131.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|+++++||+|+||.||+|.+..+++.||||+++...    .....+..|+.++..+.|++|     +++++++...+.
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~I-----v~~~~~~~~~~~   78 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFI-----VHLYYSLQSANN   78 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCc-----CeEEEEEEECCE
Confidence            57999999999999999999999999999999987532    234567789999999988887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      +||||||+ +++|.+++....  .+++..++.++.||+.||+|||++|||||||||+||||+.++.++|+|||++.
T Consensus        79 ~~lVmEy~~g~~L~~li~~~~--~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          79 VYLVMEYLIGGDVKSLLHIYG--YFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             EEEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            99999999 999999997654  68999999999999999999999999999999999999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-43  Score=330.99  Aligned_cols=234  Identities=25%  Similarity=0.399  Sum_probs=195.9

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-  175 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-  175 (433)
                      ++-||+|+.|.||+|+  -.++.||||+++.      .-..+|+-|++|+|+||     +.+.++|.....+||||||| 
T Consensus       129 LeWlGSGaQGAVF~Gr--l~netVAVKKV~e------lkETdIKHLRkLkH~NI-----I~FkGVCtqsPcyCIiMEfCa  195 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGR--LHNETVAVKKVRE------LKETDIKHLRKLKHPNI-----ITFKGVCTQSPCYCIIMEFCA  195 (904)
T ss_pred             hhhhccCcccceeeee--ccCceehhHHHhh------hhhhhHHHHHhccCcce-----eeEeeeecCCceeEEeeeccc
Confidence            5779999999999997  4577899998753      22347888999999988     99999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCC
Q 013941          176 GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLP  255 (433)
Q Consensus       176 ~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~  255 (433)
                      .|.|..+|+...  .+.......|..+|+.|++|||.+.|||||||.-||||+.+.                        
T Consensus       196 ~GqL~~VLka~~--~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d------------------------  249 (904)
T KOG4721|consen  196 QGQLYEVLKAGR--PITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDD------------------------  249 (904)
T ss_pred             cccHHHHHhccC--ccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccc------------------------
Confidence            999999998765  789999999999999999999999999999999999997655                        


Q ss_pred             CCCCeeeecCCCCccccCCCc--ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Q 013941          256 KSSAIKLIDFGSTTFEHQDHS--YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERV  333 (433)
Q Consensus       256 ~~~~~kl~Dfg~a~~~~~~~~--~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~  333 (433)
                         .|||+|||.++......+  .++||..|||||++.+.+.+.|+|||||||+||||+||..||...+..-++      
T Consensus       250 ---~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAII------  320 (904)
T KOG4721|consen  250 ---VVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAII------  320 (904)
T ss_pred             ---eEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchheeE------
Confidence               578888888876554432  369999999999999999999999999999999999999999764432211      


Q ss_pred             hcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCH
Q 013941          334 LGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKA  413 (433)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta  413 (433)
                                                 |-.+               ...+.+..+..+++.++-||++||+-.|..||++
T Consensus       321 ---------------------------wGVG---------------sNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSF  358 (904)
T KOG4721|consen  321 ---------------------------WGVG---------------SNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSF  358 (904)
T ss_pred             ---------------------------Eecc---------------CCcccccCcccCchHHHHHHHHHHhcCCCCCccH
Confidence                                       1110               1112233445677889999999999999999999


Q ss_pred             HHHhcCC
Q 013941          414 REALRHP  420 (433)
Q Consensus       414 ~ell~hp  420 (433)
                      .++|.|-
T Consensus       359 rqil~Hl  365 (904)
T KOG4721|consen  359 RQILLHL  365 (904)
T ss_pred             HHHHHHH
Confidence            9999983

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=5.9e-42  Score=320.81  Aligned_cols=259  Identities=25%  Similarity=0.387  Sum_probs=200.2

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|+..+.||+|+||.||++.+..+++.||+|.+....  .....+.+|+.++.++. |+++     +++++++...+..+
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i-----v~~~~~~~~~~~~~   79 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYI-----VKFYGALFREGDCW   79 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCE-----eeeeeEEecCCcEE
Confidence            4677889999999999999999999999999986432  33456778999998886 7666     99999999899999


Q ss_pred             EEEccCCCCHHHHHH---hcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          170 IVFEKLGPSLYDFLR---KNSYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       170 lv~e~~~~~L~~~l~---~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ++|||++++|.++..   ......+++..+..++.|++.||+|||+. ||+||||||+||+++.++              
T Consensus        80 ~~~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~--------------  145 (288)
T cd06616          80 ICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNG--------------  145 (288)
T ss_pred             EEEecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCC--------------
Confidence            999999777765543   22234799999999999999999999975 999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCC---CCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~---~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                   .++|+|||++......  .....|+..|+|||++.+.   .++.++|||||||++|+|++|+.||..
T Consensus       146 -------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  212 (288)
T cd06616         146 -------------NIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPK  212 (288)
T ss_pred             -------------cEEEeecchhHHhccCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchh
Confidence                         4677777766533221  2234688899999999876   688999999999999999999999976


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ..  .....+.+.....+.                                          .........++.++.+||.
T Consensus       213 ~~--~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~l~~li~  248 (288)
T cd06616         213 WN--SVFDQLTQVVKGDPP------------------------------------------ILSNSEEREFSPSFVNFIN  248 (288)
T ss_pred             cc--hHHHHHhhhcCCCCC------------------------------------------cCCCcCCCccCHHHHHHHH
Confidence            54  122222222111110                                          0000111235778999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      +||+.||++|||++++++||||++...
T Consensus       249 ~~l~~~p~~Rpt~~~i~~~~~~~~~~~  275 (288)
T cd06616         249 LCLIKDESKRPKYKELLEHPFIKDYEE  275 (288)
T ss_pred             HHccCChhhCcCHHHHhcChhhhchhh
Confidence            999999999999999999999987543

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=7.7e-42  Score=319.20  Aligned_cols=247  Identities=23%  Similarity=0.335  Sum_probs=198.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCC-----cEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKK-----ELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~-----~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ++|++.+.||+|+||.||+|.+...+     ..||+|.+....  .....+.+|+.++..+.|+++     +++++++..
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i-----~~~~~~~~~   79 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNI-----VCLLGVCTK   79 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCccc-----ceEEEEEcC
Confidence            46899999999999999999876554     689999986432  334567889999999988887     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCC--------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSY--------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~--------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                      .+..|++|||+ +++|.+++.....              ..+++..+..++.||+.||.|||++||+||||||+||+++.
T Consensus        80 ~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~  159 (283)
T cd05048          80 EQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGE  159 (283)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcC
Confidence            99999999999 8999999976421              35888999999999999999999999999999999999976


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHH
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSV  304 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  304 (433)
                      ++.                           ++|+|||++......     .....++..|+|||.+.+..++.++|||||
T Consensus       160 ~~~---------------------------~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~sl  212 (283)
T cd05048         160 GLT---------------------------VKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSF  212 (283)
T ss_pred             CCc---------------------------EEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHH
Confidence            654                           556666655432211     122356788999999988889999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhh
Q 013941          305 GCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL  383 (433)
Q Consensus       305 G~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (433)
                      ||++|||++ |..||.+....+....+....  .                                              
T Consensus       213 G~il~el~~~g~~p~~~~~~~~~~~~i~~~~--~----------------------------------------------  244 (283)
T cd05048         213 GVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQ--L----------------------------------------------  244 (283)
T ss_pred             HHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC--c----------------------------------------------
Confidence            999999998 999998776655444332210  0                                              


Q ss_pred             hhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       384 ~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                       ......++.++.+|+.+||+.||++|||+.|++++
T Consensus       245 -~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~  279 (283)
T cd05048         245 -LPCPEDCPARVYALMIECWNEIPARRPRFKDIHTR  279 (283)
T ss_pred             -CCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence             00123457799999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=1.2e-41  Score=314.33  Aligned_cols=252  Identities=27%  Similarity=0.463  Sum_probs=205.3

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +|++.+.||+|++|.||+|++..+++.||+|++....  .....+.+|+.++.+++|+++     +++++++...+..++
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~l   76 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYV-----VKCYGAFYKEGEISI   76 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCe-----eeEEEEEccCCeEEE
Confidence            5899999999999999999999999999999987543  345678889999999998877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ||||+ +++|.+++....  .+++..+..++.||+.||+|||+ +|++||||+|+||+++.++                 
T Consensus        77 v~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~-----------------  137 (264)
T cd06623          77 VLEYMDGGSLADLLKKVG--KIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKG-----------------  137 (264)
T ss_pred             EEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCC-----------------
Confidence            99999 899999998753  79999999999999999999999 9999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .++|+|||.+.......   ....++..|+|||.+.+..++.++||||||+++|+|++|..||.......
T Consensus       138 ----------~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~  207 (264)
T cd06623         138 ----------EVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPS  207 (264)
T ss_pred             ----------CEEEccCccceecccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccC
Confidence                      45666666655433221   13467889999999998889999999999999999999999997764211


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC-chHHHHHHHHHhcc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH-SAGDLIDLLQGLLR  404 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~li~~~L~  404 (433)
                      ....+........                                              ...... ++..+.++|.+||.
T Consensus       208 ~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~l~~li~~~l~  241 (264)
T cd06623         208 FFELMQAICDGPP----------------------------------------------PSLPAEEFSPEFRDFISACLQ  241 (264)
T ss_pred             HHHHHHHHhcCCC----------------------------------------------CCCCcccCCHHHHHHHHHHcc
Confidence            1111111111000                                              001112 56789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~  424 (433)
                      .+|++|||+.|+++||||++
T Consensus       242 ~~p~~R~~~~~ll~~~~~~~  261 (264)
T cd06623         242 KDPKKRPSAAELLQHPFIKK  261 (264)
T ss_pred             CChhhCCCHHHHHhCHHHHh
Confidence            99999999999999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=2.3e-41  Score=312.49  Aligned_cols=250  Identities=29%  Similarity=0.460  Sum_probs=199.8

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh---hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++.+.||+|+||.||+|.+..+++.||+|+++....   ....+..|+.+++.++|+++     +++++.+...+.++
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i-----~~~~~~~~~~~~~~   75 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNL-----VKYYGVEVHREKVY   75 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCCh-----hheeeeEecCCEEE
Confidence            58999999999999999999998999999999875433   45678889999999998887     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +|+||+ +++|.+++....  .+++..++.++.|++.||.|||+.||+|+||+|+||+++.++.+               
T Consensus        76 lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~---------------  138 (264)
T cd06626          76 IFMEYCSGGTLEELLEHGR--ILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVI---------------  138 (264)
T ss_pred             EEEecCCCCcHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCE---------------
Confidence            999999 899999998754  58899999999999999999999999999999999999776654               


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC-------cccccCCcccchhhhhCCC---CCccchHHHHHHHHHHHHhCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH-------SYVVSTRHYRAPEVILGLG---WNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~gt~~y~aPE~~~~~~---~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                  +|+|||.+.......       ....++..|+|||++.+..   ++.++||||||+++|++++|..||
T Consensus       139 ------------kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf  206 (264)
T cd06626         139 ------------KLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPW  206 (264)
T ss_pred             ------------EEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCc
Confidence                        555555444322111       1235788999999998766   889999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ............... +..+                     ..                        .....++..+.++
T Consensus       207 ~~~~~~~~~~~~~~~-~~~~---------------------~~------------------------~~~~~~~~~~~~l  240 (264)
T cd06626         207 SELDNEFQIMFHVGA-GHKP---------------------PI------------------------PDSLQLSPEGKDF  240 (264)
T ss_pred             cCCcchHHHHHHHhc-CCCC---------------------CC------------------------CcccccCHHHHHH
Confidence            765322211111110 1100                     00                        0112236688999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCC
Q 013941          399 LQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      |.+||+.||++|||+.|++.|||+
T Consensus       241 i~~~l~~~p~~R~~~~~i~~~~~~  264 (264)
T cd06626         241 LDRCLESDPKKRPTASELLQHPFV  264 (264)
T ss_pred             HHHHccCCcccCCCHHHHhcCCCC
Confidence            999999999999999999999997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=2.4e-41  Score=312.29  Aligned_cols=249  Identities=24%  Similarity=0.435  Sum_probs=200.9

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec--cCCe
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD--YRNH  167 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~--~~~~  167 (433)
                      +|++.+.||.|+||.||+|.+..+++.||+|++...   ....+.+..|+.+++.++|+++     +++++++.  .+..
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~   75 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNI-----VRYYDRIIDRSNQT   75 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCcc-----ceeeeeeecCCCCE
Confidence            489999999999999999999999999999998642   2344567789999999999887     99888764  3567


Q ss_pred             EEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHH-----hCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          168 ICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMH-----ELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH-----~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      .+++|||+ +++|.+++...  ....+++..++.++.||+.||.|||     +.+|+|+||||+||+++.++        
T Consensus        76 ~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~--------  147 (265)
T cd08217          76 LYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANN--------  147 (265)
T ss_pred             EEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCC--------
Confidence            89999999 89999998753  2247899999999999999999999     89999999999999997665        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                         .++|+|||++.......   ....|+..|+|||++.+..++.++|+||||+++|+|++|..
T Consensus       148 -------------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~  208 (265)
T cd08217         148 -------------------NVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSP  208 (265)
T ss_pred             -------------------CEEEecccccccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCC
Confidence                               45666666655433222   23468899999999998889999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||...+.......+....  .+                                               ......+..+.
T Consensus       209 p~~~~~~~~~~~~~~~~~--~~-----------------------------------------------~~~~~~~~~~~  239 (265)
T cd08217         209 PFTARNQLQLASKIKEGK--FR-----------------------------------------------RIPYRYSSELN  239 (265)
T ss_pred             cccCcCHHHHHHHHhcCC--CC-----------------------------------------------CCccccCHHHH
Confidence            998766443332222110  00                                               01123466899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      +++.+||+.+|++|||+++|++|||+
T Consensus       240 ~l~~~~l~~~p~~Rp~~~~il~~~~~  265 (265)
T cd08217         240 EVIKSMLNVDPDKRPSTEELLQLPLI  265 (265)
T ss_pred             HHHHHHccCCcccCCCHHHHhhCCCC
Confidence            99999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=1.5e-41  Score=314.45  Aligned_cols=249  Identities=26%  Similarity=0.407  Sum_probs=193.1

Q ss_pred             CCeEEeccc--cccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKM--GEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~l--g~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.+.+  |+|+||.||++++..+++.+|+|++.......    .|+.+...+.    .|++++++++.+...+..|
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~----~e~~~~~~~~----~h~~iv~~~~~~~~~~~~~   85 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA----IEPMVHQLMK----DNPNFIKLYYSVTTLKGHV   85 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch----hhHHHHHHhh----cCCCEEEEEEEEecCCeeE
Confidence            467777776  99999999999999999999999986432111    1333322222    2345599999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++....  .+++..++.++.||+.||.|||+.||+||||||+||+++.++                 
T Consensus        86 iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~-----------------  146 (267)
T PHA03390         86 LIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAK-----------------  146 (267)
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCC-----------------
Confidence            999999 999999998764  799999999999999999999999999999999999997644                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH-H
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH-L  327 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~-~  327 (433)
                               ..++|+|||.+...... ....|+..|+|||++.+..++.++|||||||++|+|++|..||........ .
T Consensus       147 ---------~~~~l~dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~  216 (267)
T PHA03390        147 ---------DRIYLCDYGLCKIIGTP-SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELDL  216 (267)
T ss_pred             ---------CeEEEecCccceecCCC-ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhhH
Confidence                     14677777776554332 224688999999999988899999999999999999999999975443221 1


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP  407 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  407 (433)
                      ..+......                                               .....+..+..+.+||.+||+.||
T Consensus       217 ~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~li~~~l~~~p  249 (267)
T PHA03390        217 ESLLKRQQK-----------------------------------------------KLPFIKNVSKNANDFVQSMLKYNI  249 (267)
T ss_pred             HHHHHhhcc-----------------------------------------------cCCcccccCHHHHHHHHHHhccCh
Confidence            111110000                                               001122457789999999999999


Q ss_pred             CCCCC-HHHHhcCCCCCC
Q 013941          408 AERLK-AREALRHPFFTR  424 (433)
Q Consensus       408 ~~R~t-a~ell~hp~f~~  424 (433)
                      .+|++ ++|+|+||||.+
T Consensus       250 ~~R~~~~~~~l~h~~~~~  267 (267)
T PHA03390        250 NYRLTNYNEIIKHPFLKI  267 (267)
T ss_pred             hhCCchHHHHhcCCcccC
Confidence            99996 599999999974

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.1e-43  Score=296.05  Aligned_cols=280  Identities=28%  Similarity=0.551  Sum_probs=219.3

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--CCe
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--RNH  167 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--~~~  167 (433)
                      -.++|++++++|+|-|+.||.|.+..+++.++||+++...  ...+.+|+.||+.|.    +++|+++++++..+  ...
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk--kkKIkREikIL~nL~----gg~NIi~L~DiV~Dp~Skt  109 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK--KKKIKREIKILQNLR----GGPNIIKLLDIVKDPESKT  109 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH--HHHHHHHHHHHHhcc----CCCCeeehhhhhcCccccC
Confidence            3568999999999999999999999999999999997543  356889999999998    33455999999876  456


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ..||+||. +.+...+..     .++...++.++.+|+.||.|||++||+|||+||.|++|+.                 
T Consensus       110 paLiFE~v~n~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh-----------------  167 (338)
T KOG0668|consen  110 PSLIFEYVNNTDFKQLYP-----TLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDH-----------------  167 (338)
T ss_pred             chhHhhhhccccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeech-----------------
Confidence            78999999 666655543     5888999999999999999999999999999999999975                 


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcc--cccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCC-CCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALF-QTHE  322 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~--~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf-~~~~  322 (433)
                               ....++|+|+|+|.+.+....+  .+.+..|--||++..- .|+..-|+|||||+|..|+..+-|| .|.+
T Consensus       168 ---------~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~d  238 (338)
T KOG0668|consen  168 ---------ELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHD  238 (338)
T ss_pred             ---------hhceeeeeecchHhhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCC
Confidence                     3457899999999987766543  5778899999999875 5899999999999999999987775 7889


Q ss_pred             hHHHHHHHHHHhcCCChh-hHHh----hhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhh-ccCCchHHHH
Q 013941          323 NLEHLAMMERVLGPLPHH-MVIR----ADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ-HVDHSAGDLI  396 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~  396 (433)
                      +.+++..|.+++|.-.-. ++..    .+...........+..|..                   +... ...-.++++.
T Consensus       239 N~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~-------------------Fi~~~n~hl~~peai  299 (338)
T KOG0668|consen  239 NYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSR-------------------FINSENQHLVSPEAI  299 (338)
T ss_pred             CHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHH-------------------hCCccccccCChHHH
Confidence            999999999998852110 0000    1111111122222222221                   1111 1123468999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |||.++|..|-.+|+||+|++.||||...
T Consensus       300 DlldklLrYDHqeRlTakEam~HpyF~~~  328 (338)
T KOG0668|consen  300 DLLDKLLRYDHQERLTAKEAMAHPYFAPV  328 (338)
T ss_pred             HHHHHHHhhccccccchHHHhcCchHHHH
Confidence            99999999999999999999999999854

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=7.6e-42  Score=318.65  Aligned_cols=246  Identities=21%  Similarity=0.332  Sum_probs=197.2

Q ss_pred             CCeEEeccccccccEEEEEEEecC-----CCcEEEEEEeccchh--hHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE-----KKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      .+|.+.+.||+|+||.||+|.+..     +++.||+|+++....  ..+.+.+|+++++.+.|+++     +++++++..
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~   79 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENI-----VKFYGVCTE   79 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCc-----hheeeEEec
Confidence            468999999999999999998743     467899999875432  35678899999999988877     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcC------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNS------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      .+..++||||+ +++|.+++...+            ...+++..+..++.||+.||+|||++||+||||||+||+++.++
T Consensus        80 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~  159 (280)
T cd05049          80 GDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDL  159 (280)
T ss_pred             CCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCC
Confidence            99999999999 999999997543            13578899999999999999999999999999999999997766


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGC  306 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~  306 (433)
                      .                           ++|+|||++......     .....++..|+|||++.+..++.++|||||||
T Consensus       160 ~---------------------------~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  212 (280)
T cd05049         160 V---------------------------VKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGV  212 (280)
T ss_pred             e---------------------------EEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHH
Confidence            4                           455555555432111     12234577899999999999999999999999


Q ss_pred             HHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          307 ILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       307 il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      ++|+|++ |..||...+.......+......                                                 
T Consensus       213 il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~-------------------------------------------------  243 (280)
T cd05049         213 VLWEIFTYGKQPWYGLSNEEVIECITQGRLL-------------------------------------------------  243 (280)
T ss_pred             HHHHHHhcCCCCCCCCCHHHHHHHHHcCCcC-------------------------------------------------
Confidence            9999998 99999876665544433311100                                                 


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      ......+..+.++|.+||+.||++|||+.|+++
T Consensus       244 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  276 (280)
T cd05049         244 QRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHE  276 (280)
T ss_pred             CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            011234678999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=7.2e-42  Score=320.98  Aligned_cols=254  Identities=28%  Similarity=0.429  Sum_probs=204.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc-hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .++|.+.+.||+|+||.||++.+..+++.||+|.+... ....+.+.+|+.+++.+.|+++     +++++.+...+..|
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i-----~~~~~~~~~~~~~~   92 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNI-----VNYLDSYLVGDELW   92 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCe-----eehhheeeeCCcEE
Confidence            36899999999999999999999889999999998643 2334567789999999888777     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +|+||+ +++|.+++.+.   .+++..+..++.||+.||.|||++|++||||||+||+++.++.                
T Consensus        93 lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~----------------  153 (293)
T cd06647          93 VVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGS----------------  153 (293)
T ss_pred             EEEecCCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCC----------------
Confidence            999999 99999998764   4889999999999999999999999999999999999976554                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                 ++|+|||++......   .....|+..|+|||.+.+..++.++|||||||++|++++|..||...+...
T Consensus       154 -----------~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~  222 (293)
T cd06647         154 -----------VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR  222 (293)
T ss_pred             -----------EEEccCcceecccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhh
Confidence                       566666654432211   122468889999999988889999999999999999999999997655433


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+..  +..|                                             ........+..+.++|.+||+.
T Consensus       223 ~~~~~~~--~~~~---------------------------------------------~~~~~~~~~~~l~~li~~~l~~  255 (293)
T cd06647         223 ALYLIAT--NGTP---------------------------------------------ELQNPEKLSAIFRDFLNRCLEM  255 (293)
T ss_pred             heeehhc--CCCC---------------------------------------------CCCCccccCHHHHHHHHHHccC
Confidence            2221110  0000                                             0011223456899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCc
Q 013941          406 DPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~  426 (433)
                      +|++||++.+++.|+||+...
T Consensus       256 ~p~~Rp~~~~il~h~~~~~~~  276 (293)
T cd06647         256 DVEKRGSAKELLQHPFLKIAK  276 (293)
T ss_pred             ChhhCcCHHHHhcCHHHhcCc
Confidence            999999999999999999754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.8e-41  Score=315.78  Aligned_cols=251  Identities=21%  Similarity=0.301  Sum_probs=200.8

Q ss_pred             CCCeEEeccccccccEEEEEEEecC-----CCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNE-----KKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      .++|++.+.||+|+||.||+|.+..     ++..||+|.+....  .....+.+|+.+++.+.|+++     +++++++.
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~   79 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNI-----VRLIGVSF   79 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEc
Confidence            3579999999999999999999877     77889999886432  334567889999999988777     99999998


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSY-----RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      +.+..++||||+ +++|.+++.....     ..+++..+..++.||+.||+|||++|++||||||+||+++.++      
T Consensus        80 ~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~------  153 (277)
T cd05036          80 ERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKG------  153 (277)
T ss_pred             cCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccC------
Confidence            888999999999 9999999976531     2588999999999999999999999999999999999997644      


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCc-----ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHH
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS-----YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~  312 (433)
                                        ....++|+|||++........     ....+..|+|||++.+..++.++|||||||++|+|+
T Consensus       154 ------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~  215 (277)
T cd05036         154 ------------------PGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIF  215 (277)
T ss_pred             ------------------CCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHH
Confidence                              223578888888765422211     123346799999999888999999999999999999


Q ss_pred             h-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          313 S-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       313 ~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      + |..||.+.+.......+.....                       .                          ......
T Consensus       216 ~~g~~pf~~~~~~~~~~~~~~~~~-----------------------~--------------------------~~~~~~  246 (277)
T cd05036         216 SLGYMPYPGRTNQEVMEFVTGGGR-----------------------L--------------------------DPPKGC  246 (277)
T ss_pred             cCCCCCCCCCCHHHHHHHHHcCCc-----------------------C--------------------------CCCCCC
Confidence            7 9999987665544332221100                       0                          011234


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      +..+.+++.+||+.||++|||+.+|++|
T Consensus       247 ~~~~~~~i~~cl~~~p~~Rps~~~vl~~  274 (277)
T cd05036         247 PGPVYRIMTDCWQHTPEDRPNFATILER  274 (277)
T ss_pred             CHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            6689999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=2.6e-41  Score=313.13  Aligned_cols=249  Identities=24%  Similarity=0.387  Sum_probs=195.3

Q ss_pred             EEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      .....||+|+||.||+|.+..++..||+|.+.... ...+.+.+|+.+++.++|+++     +++++++..++..++|||
T Consensus        11 ~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~~~lv~e   85 (268)
T cd06624          11 GERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNI-----VQYLGSDSENGFFKIFME   85 (268)
T ss_pred             CceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCe-----eeeeeeeccCCEEEEEEe
Confidence            34468999999999999999999999999886543 344567889999999988877     999999999999999999


Q ss_pred             cC-CCCHHHHHHhcCCCCC--CHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          174 KL-GPSLYDFLRKNSYRSF--PIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~~~~l--~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |+ +++|.+++.... ..+  ++..+..++.||+.||.|||++||+||||||+||+++.+                    
T Consensus        86 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~--------------------  144 (268)
T cd06624          86 QVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTY--------------------  144 (268)
T ss_pred             cCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCC--------------------
Confidence            99 899999997642 234  788899999999999999999999999999999999641                    


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCC--CCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLG--WNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~--~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                            ...++|+|||.+......   .....|+..|+|||++.+..  ++.++||||||+++|+|++|..||.......
T Consensus       145 ------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~  218 (268)
T cd06624         145 ------SGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQ  218 (268)
T ss_pred             ------CCeEEEecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChh
Confidence                  224677777776543221   12246788999999987643  7899999999999999999999996543221


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ..........                                               .........+.++.+|+.+||+.
T Consensus       219 ~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~~~li~~~l~~  251 (268)
T cd06624         219 AAMFKVGMFK-----------------------------------------------IHPEIPESLSAEAKNFILRCFEP  251 (268)
T ss_pred             hhHhhhhhhc-----------------------------------------------cCCCCCcccCHHHHHHHHHHcCC
Confidence            1100000000                                               00011233467899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      +|++|||+.|++.||||
T Consensus       252 ~p~~Rpt~~~ll~~~~~  268 (268)
T cd06624         252 DPDKRASAHDLLQDPFL  268 (268)
T ss_pred             CchhCCCHHHHHhCCCC
Confidence            99999999999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-41  Score=315.07  Aligned_cols=275  Identities=32%  Similarity=0.565  Sum_probs=215.1

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      |++.+.||+|++|.||+|++..+++.||+|++...   ....+.+..|+.+++.+.|+++     +++++++...+..++
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~~~~~~   75 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNI-----VKLLDVIHTERKLYL   75 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCH-----HHHHhhhhcCCceEE
Confidence            67789999999999999999999999999998754   3334567789999999988777     999999999999999


Q ss_pred             EEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          171 VFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       171 v~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      ||||++++|.+++.... ..+++..+..++.|++.||+|||++||+||||+|+||+++.++                   
T Consensus        76 v~e~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~-------------------  135 (282)
T cd07829          76 VFEYCDMDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDG-------------------  135 (282)
T ss_pred             EecCcCcCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCC-------------------
Confidence            99999779999998753 3699999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                              .++|+|||.+.......   ....++..|+|||.+.+. .++.++|||||||++|||++|..||.+.+....
T Consensus       136 --------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~  207 (282)
T cd07829         136 --------VLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQ  207 (282)
T ss_pred             --------CEEEecCCcccccCCCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHH
Confidence                    45666666655432221   123457789999998876 789999999999999999999999999888887


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      +..+.+..+...+..+.......  .+    ...++...               ...........+..+.++|.+||..|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~---------------~~~~~~~~~~~~~~~~~~i~~~l~~~  266 (282)
T cd07829         208 LFKIFQILGTPTEESWPGVTKLP--DY----KPTFPKFP---------------PKDLEKVLPRLDPEGIDLLSKMLQYN  266 (282)
T ss_pred             HHHHHHHhCCCcHHHHHhhcccc--cc----cccccccC---------------ccchHHhcccccHHHHHHHHHhhccC
Confidence            77777777665554333221110  00    00000000               00001122334678999999999999


Q ss_pred             CCCCCCHHHHhcCCCC
Q 013941          407 PAERLKAREALRHPFF  422 (433)
Q Consensus       407 P~~R~ta~ell~hp~f  422 (433)
                      |++||++++++.||||
T Consensus       267 P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         267 PAKRISAKEALKHPYF  282 (282)
T ss_pred             cccCCCHHHHhhCcCC
Confidence            9999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.8e-41  Score=317.23  Aligned_cols=258  Identities=28%  Similarity=0.459  Sum_probs=210.0

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +...+.|++.+.||+|++|.||+|.+..+++.||+|++.......+.+.+|+++++.+.|+++     +++++.+...+.
T Consensus        15 ~~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~   89 (286)
T cd06614          15 GDPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNI-----VDYYDSYLVGDE   89 (286)
T ss_pred             CCccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCe-----eEEEEEEEECCE
Confidence            445677999999999999999999999889999999997655455678889999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+|+||+ +++|.+++.... ..+++..+..++.||+.||.|||+.||+|+||||+||+++.++.              
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~--------------  154 (286)
T cd06614          90 LWVVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGS--------------  154 (286)
T ss_pred             EEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCC--------------
Confidence            99999999 799999998764 36999999999999999999999999999999999999977664              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                   ++|+|||.+......   .....++..|+|||++.+..++.++|||||||++|+|++|..||...+.
T Consensus       155 -------------~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~  221 (286)
T cd06614         155 -------------VKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPP  221 (286)
T ss_pred             -------------EEECccchhhhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCH
Confidence                         455555544332211   1223578899999999888899999999999999999999999987655


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+...  ..+.                                             ......++..+.++|.+||
T Consensus       222 ~~~~~~~~~~--~~~~---------------------------------------------~~~~~~~~~~l~~li~~~l  254 (286)
T cd06614         222 LRALFLITTK--GIPP---------------------------------------------LKNPEKWSPEFKDFLNKCL  254 (286)
T ss_pred             HHHHHHHHhc--CCCC---------------------------------------------CcchhhCCHHHHHHHHHHh
Confidence            4433322211  0000                                             0001124568999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCC
Q 013941          404 RYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +.+|.+|||+.++++|+||++.
T Consensus       255 ~~~p~~Rpt~~~il~~~~~~~~  276 (286)
T cd06614         255 VKDPEKRPSAEELLQHPFLKKA  276 (286)
T ss_pred             ccChhhCcCHHHHhhChHhhcc
Confidence            9999999999999999999983

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=2.2e-41  Score=311.43  Aligned_cols=244  Identities=23%  Similarity=0.345  Sum_probs=196.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      +.|++.+.||+|+||.||++... ++..+|+|.+.........+.+|+.++++++|+++     +++++++...+..++|
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~-~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~iv   77 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWR-AQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKL-----VQLYGVCTQQKPLYIV   77 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEec-cCceEEEEecccCCccHHHHHHHHHHHHHCCCCCc-----eeEEEEEccCCCEEEE
Confidence            35899999999999999999875 45579999987655555678889999999998887     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.                  
T Consensus        78 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~------------------  138 (256)
T cd05114          78 TEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGV------------------  138 (256)
T ss_pred             EEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCe------------------
Confidence            9999 899999987643 35899999999999999999999999999999999999976554                  


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                               ++|+|||.+.......    ....++..|+|||++.+..++.++||||||+++|+|++ |+.||...+..+
T Consensus       139 ---------~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~  209 (256)
T cd05114         139 ---------VKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYE  209 (256)
T ss_pred             ---------EEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHH
Confidence                     5666666554322111    11234567999999988889999999999999999999 999998776665


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+....                                                 ......+..+.+++.+||+.
T Consensus       210 ~~~~i~~~~~~-------------------------------------------------~~~~~~~~~~~~li~~c~~~  240 (256)
T cd05114         210 VVEMISRGFRL-------------------------------------------------YRPKLASMTVYEVMYSCWHE  240 (256)
T ss_pred             HHHHHHCCCCC-------------------------------------------------CCCCCCCHHHHHHHHHHccC
Confidence            55544321100                                                 00112355789999999999


Q ss_pred             CCCCCCCHHHHhc
Q 013941          406 DPAERLKAREALR  418 (433)
Q Consensus       406 dP~~R~ta~ell~  418 (433)
                      ||++|||++++++
T Consensus       241 ~p~~Rps~~~l~~  253 (256)
T cd05114         241 KPEGRPTFAELLR  253 (256)
T ss_pred             CcccCcCHHHHHH
Confidence            9999999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-42  Score=330.78  Aligned_cols=246  Identities=30%  Similarity=0.448  Sum_probs=201.1

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +.+.|.+...+|.|+|+.|-.+.+..+++..++|++.+.   .....+|+.++....+    |+|++++++.+.++.+.|
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~---~~~~~~e~~~~~~~~~----h~niv~~~~v~~~~~~~~  392 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKR---ADDNQDEIPISLLVRD----HPNIVKSHDVYEDGKEIY  392 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccccccchhheecccc---ccccccccchhhhhcC----CCcceeecceecCCceee
Confidence            456799999999999999999999999999999999764   2334557766666542    244599999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEe-eCCcccccCccccccCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV-SAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~-~~~~~~l~d~~~~~~~~~~  247 (433)
                      +|||.+ |+-|.+.+....  .+. ..+..|+.+|+.|+.|||++|||||||||+|||++ +.|                
T Consensus       393 ~v~e~l~g~ell~ri~~~~--~~~-~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g----------------  453 (612)
T KOG0603|consen  393 LVMELLDGGELLRRIRSKP--EFC-SEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAG----------------  453 (612)
T ss_pred             eeehhccccHHHHHHHhcc--hhH-HHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCC----------------
Confidence            999999 887777777654  233 77888999999999999999999999999999994 444                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL  327 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~  327 (433)
                                 .++|+|||.+........+.+-|..|.|||++....|+.++||||||++||+|++|+.||......   
T Consensus       454 -----------~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~---  519 (612)
T KOG0603|consen  454 -----------HLRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG---  519 (612)
T ss_pred             -----------cEEEEEechhhhCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch---
Confidence                       578888888876665544456789999999999999999999999999999999999999876655   


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP  407 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  407 (433)
                      ..+...++..+                                                ....+|..+++||++||+.||
T Consensus       520 ~ei~~~i~~~~------------------------------------------------~s~~vS~~AKdLl~~LL~~dP  551 (612)
T KOG0603|consen  520 IEIHTRIQMPK------------------------------------------------FSECVSDEAKDLLQQLLQVDP  551 (612)
T ss_pred             HHHHHhhcCCc------------------------------------------------cccccCHHHHHHHHHhccCCh
Confidence            12222111111                                                114568899999999999999


Q ss_pred             CCCCCHHHHhcCCCCC
Q 013941          408 AERLKAREALRHPFFT  423 (433)
Q Consensus       408 ~~R~ta~ell~hp~f~  423 (433)
                      .+|+++.+++.||||.
T Consensus       552 ~~Rl~~~~i~~h~w~~  567 (612)
T KOG0603|consen  552 ALRLGADEIGAHPWFL  567 (612)
T ss_pred             hhCcChhhhccCcchh
Confidence            9999999999999993

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.4e-42  Score=330.83  Aligned_cols=251  Identities=25%  Similarity=0.427  Sum_probs=207.5

Q ss_pred             CCe-EEeccccccccEEEEEEEecCCCcEEEEEEec-----cchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRY-RILSKMGEGTFGQVVECFDNEKKELVAIKIVR-----SINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y-~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~-----~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      +|| +...+||+|+|-+||+|.|..+|..||--.++     +.....+.+..|+.+|+.|+|+||     ++++++|.+.
T Consensus        39 gRy~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NI-----irfy~SW~d~  113 (632)
T KOG0584|consen   39 GRYLKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNI-----IRFYDSWVDT  113 (632)
T ss_pred             CceeehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCce-----eeeeeheecC
Confidence            444 55679999999999999999999888743332     334455788899999999999988     9999999875


Q ss_pred             C--eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccCccc
Q 013941          166 N--HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       166 ~--~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      .  .+.+|+|++ .|+|..|+.+.+  .++...++.|++||+.||.|||++.  |||||||.+||+|+.           
T Consensus       114 ~n~~in~iTEL~TSGtLr~Y~kk~~--~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG-----------  180 (632)
T KOG0584|consen  114 DNKTINFITELFTSGTLREYRKKHR--RVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNG-----------  180 (632)
T ss_pred             CCceeeeeeecccCCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcC-----------
Confidence            4  589999999 999999999876  7999999999999999999999986  999999999999953           


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                     ..+.|||+|+|+|....... ..++|||.|||||++. ..|+..+||||||+.++||+|+.+||.
T Consensus       181 ---------------~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYs  244 (632)
T KOG0584|consen  181 ---------------NLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYS  244 (632)
T ss_pred             ---------------CcCceeecchhHHHHhhccccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChh
Confidence                           55689999999998776554 3469999999999998 689999999999999999999999998


Q ss_pred             CCChHHH-HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          320 THENLEH-LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       320 ~~~~~~~-~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ...+.-+ +..+..  |.-|..+                                              ..-..+++++|
T Consensus       245 EC~n~AQIYKKV~S--GiKP~sl----------------------------------------------~kV~dPevr~f  276 (632)
T KOG0584|consen  245 ECTNPAQIYKKVTS--GIKPAAL----------------------------------------------SKVKDPEVREF  276 (632)
T ss_pred             hhCCHHHHHHHHHc--CCCHHHh----------------------------------------------hccCCHHHHHH
Confidence            7655433 332221  1111110                                              01115689999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |.+||.. .++|+|+.|+|+||||..+
T Consensus       277 IekCl~~-~~~R~sa~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  277 IEKCLAT-KSERLSAKELLKDPFFDED  302 (632)
T ss_pred             HHHHhcC-chhccCHHHHhhChhhccc
Confidence            9999999 9999999999999999986

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.5e-41  Score=310.99  Aligned_cols=245  Identities=22%  Similarity=0.354  Sum_probs=197.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.+.||+|++|.||+|.+. +++.||+|.++......+.+.+|+.++++++|+++     +++++++...+..|+|
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~lv   79 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWN-NTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKL-----IQLYAVCTLEEPIYIV   79 (261)
T ss_pred             hheeeEEEecccCCccEEEEEec-CCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCc-----cceeEEEecCCCeeee
Confidence            56999999999999999999865 45679999987655555678899999999998877     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.......+++..+..++.|++.||.|||++||+||||||+||+++.++.                  
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~------------------  141 (261)
T cd05068          80 TELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNI------------------  141 (261)
T ss_pred             eecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCC------------------
Confidence            9999 999999998765457899999999999999999999999999999999999977664                  


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC-ccc---ccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH-SYV---VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~---~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                               ++|+|||++....... ...   ..+..|+|||++.+..++.++|||||||++|+|++ |+.||.+.....
T Consensus       142 ---------~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~  212 (261)
T cd05068         142 ---------CKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAE  212 (261)
T ss_pred             ---------EEECCcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence                     5566666554332111 111   22357999999998889999999999999999999 999998776555


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+... .                                                ......+..+.+++.+||+.
T Consensus       213 ~~~~~~~~~~-~------------------------------------------------~~~~~~~~~~~~li~~~l~~  243 (261)
T cd05068         213 VLQQVDQGYR-M------------------------------------------------PCPPGCPKELYDIMLDCWKE  243 (261)
T ss_pred             HHHHHHcCCC-C------------------------------------------------CCCCcCCHHHHHHHHHHhhc
Confidence            4443322110 0                                                01123456899999999999


Q ss_pred             CCCCCCCHHHHhc
Q 013941          406 DPAERLKAREALR  418 (433)
Q Consensus       406 dP~~R~ta~ell~  418 (433)
                      ||++||++.++++
T Consensus       244 ~P~~Rp~~~~l~~  256 (261)
T cd05068         244 DPDDRPTFETLQW  256 (261)
T ss_pred             CcccCCCHHHHHH
Confidence            9999999999874

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=3.1e-41  Score=310.51  Aligned_cols=245  Identities=22%  Similarity=0.343  Sum_probs=195.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.+.||+|+||.||+|.+.. +..+|+|.+.......+.+.+|+.+++++.|+++     +++++++...+..++|
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~-~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~lv   77 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRG-QYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKL-----VQLYGVCTKQRPIYIV   77 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecC-CCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCe-----eeEEEEEccCCCcEEE
Confidence            359999999999999999998654 4459999987655455678899999999988777     9999999988999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.... ..+++..++.++.||+.||+|||+.||+|+||||+||+++.++.                  
T Consensus        78 ~e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~------------------  138 (256)
T cd05113          78 TEYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGC------------------  138 (256)
T ss_pred             EEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCC------------------
Confidence            9999 899999997654 26899999999999999999999999999999999999976654                  


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                               +||+|||.+.......    ....++..|+|||++.+..++.++|||||||++|+|++ |..||...+...
T Consensus       139 ---------~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~  209 (256)
T cd05113         139 ---------VKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSE  209 (256)
T ss_pred             ---------EEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH
Confidence                     5566666554322211    11235567999999998889999999999999999998 999998766554


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+.....                                                 .....+..+.+++.+||+.
T Consensus       210 ~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~li~~cl~~  240 (256)
T cd05113         210 TVEKVSQGLRLY-------------------------------------------------RPHLASEKVYAIMYSCWHE  240 (256)
T ss_pred             HHHHHhcCCCCC-------------------------------------------------CCCCCCHHHHHHHHHHcCC
Confidence            443332211000                                                 0112356899999999999


Q ss_pred             CCCCCCCHHHHhcC
Q 013941          406 DPAERLKAREALRH  419 (433)
Q Consensus       406 dP~~R~ta~ell~h  419 (433)
                      ||++|||+.+++++
T Consensus       241 ~p~~Rp~~~~ll~~  254 (256)
T cd05113         241 KAEERPTFQQLLSS  254 (256)
T ss_pred             CcccCCCHHHHHHh
Confidence            99999999999864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=3.5e-41  Score=311.20  Aligned_cols=245  Identities=26%  Similarity=0.349  Sum_probs=194.6

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .++|++.++||+|+||.||+|++..++ .||+|+++......+.+.+|+.+++++.|+++     +++++.+.. +..++
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~-~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i-----~~~~~~~~~-~~~~l   77 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNGTT-RVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL-----VQLYAVVSE-EPIYI   77 (262)
T ss_pred             hHHeeEeeecCCCCCCcEEEEEecCCc-eEEEEecccCccCHHHHHHHHHHHHhCCCCCc-----ceEEEEECC-CCcEE
Confidence            357999999999999999999886664 59999998655555678899999999988877     888887754 56899


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.|++.||+|||++||+||||||+||+++.++.                 
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~-----------------  140 (262)
T cd05071          78 VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLV-----------------  140 (262)
T ss_pred             EEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCc-----------------
Confidence            99999 889999998654456899999999999999999999999999999999999976554                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                                ++|+|||.+.......    ....++..|+|||+..+..++.++|||||||++|+|++ |..||.+....
T Consensus       141 ----------~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~  210 (262)
T cd05071         141 ----------CKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR  210 (262)
T ss_pred             ----------EEeccCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChH
Confidence                      5666666654332221    11245678999999988889999999999999999999 88999876655


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+.... ..                                                ......+..+.+||.+||+
T Consensus       211 ~~~~~~~~~~-~~------------------------------------------------~~~~~~~~~l~~li~~~l~  241 (262)
T cd05071         211 EVLDQVERGY-RM------------------------------------------------PCPPECPESLHDLMCQCWR  241 (262)
T ss_pred             HHHHHHhcCC-CC------------------------------------------------CCccccCHHHHHHHHHHcc
Confidence            4433322110 00                                                0012346689999999999


Q ss_pred             cCCCCCCCHHHHhc
Q 013941          405 YDPAERLKAREALR  418 (433)
Q Consensus       405 ~dP~~R~ta~ell~  418 (433)
                      .||++|||+.++++
T Consensus       242 ~~p~~Rp~~~~~~~  255 (262)
T cd05071         242 KEPEERPTFEYLQA  255 (262)
T ss_pred             CCcccCCCHHHHHH
Confidence            99999999999874

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-42  Score=324.03  Aligned_cols=248  Identities=23%  Similarity=0.323  Sum_probs=196.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEecc---chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ...+...+...||+|+||+||+|++-.   .||||+++-   .....+.+++|+.++++-+|.||     +-+.|++...
T Consensus       389 Ip~~ev~l~~rIGsGsFGtV~Rg~whG---dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NI-----lLFMG~~~~p  460 (678)
T KOG0193|consen  389 IPPEEVLLGERIGSGSFGTVYRGRWHG---DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENI-----LLFMGACMNP  460 (678)
T ss_pred             cCHHHhhccceeccccccceeeccccc---ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhh-----eeeehhhcCC
Confidence            334567789999999999999998643   399999974   34567889999999999999998     9999999887


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .. .||+.+| |.+|+.+++-.. ..|.....+.|++||++|+.|||.++|||||||..||++.+++             
T Consensus       461 ~~-AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~-------------  525 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDL-------------  525 (678)
T ss_pred             ce-eeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCC-------------
Confidence            77 9999999 889999998554 4799999999999999999999999999999999999996655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhC---CCCCccchHHHHHHHHHHHHhCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILG---LGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                    .|||+|||++.....     ......|...|||||++..   .+|++.+|||||||++|||++|..
T Consensus       526 --------------kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~l  591 (678)
T KOG0193|consen  526 --------------KVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGEL  591 (678)
T ss_pred             --------------cEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcC
Confidence                          567777777654221     1122467889999999974   469999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||...+..+++.++-+....                         ++                    ........+.+++
T Consensus       592 Pysi~~~dqIifmVGrG~l~-------------------------pd--------------------~s~~~s~~pk~mk  626 (678)
T KOG0193|consen  592 PYSIQNRDQIIFMVGRGYLM-------------------------PD--------------------LSKIRSNCPKAMK  626 (678)
T ss_pred             CcCCCChhheEEEecccccC-------------------------cc--------------------chhhhccCHHHHH
Confidence            99955444433333221100                         00                    0112234567999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q 013941          397 DLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +|+..||.+++++||+..+||.
T Consensus       627 ~Ll~~C~~~~~~eRP~F~~il~  648 (678)
T KOG0193|consen  627 RLLSDCWKFDREERPLFPQLLS  648 (678)
T ss_pred             HHHHHHHhcCcccCccHHHHHH
Confidence            9999999999999999988876

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=3.9e-41  Score=310.46  Aligned_cols=245  Identities=25%  Similarity=0.373  Sum_probs=197.0

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .+.|+++++||+|+||.||+|... +++.||+|.+.........+.+|+.++++++|+++     +++++++. .+..++
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~-~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~-~~~~~~   77 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYN-GHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRL-----VRLYAVVT-QEPIYI   77 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecC-CCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCe-----eeEEEEEc-cCCcEE
Confidence            467999999999999999999854 56789999998666556778899999999988877     88888764 467899


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.|++.||+|||+.|++||||||+||+++.++.                 
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~-----------------  140 (260)
T cd05067          78 ITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLC-----------------  140 (260)
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCC-----------------
Confidence            99999 999999997665567899999999999999999999999999999999999976654                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                                ++|+|||.+.......    ....++..|+|||++.+..++.++||||||+++|+|++ |+.||.+.+..
T Consensus       141 ----------~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~  210 (260)
T cd05067         141 ----------CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNP  210 (260)
T ss_pred             ----------EEEccCcceeecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChH
Confidence                      5666666554333111    11245678999999988889999999999999999999 99999876655


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+......                                                 ......+.++.++|.+||+
T Consensus       211 ~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~li~~~l~  241 (260)
T cd05067         211 EVIQNLERGYRM-------------------------------------------------PRPDNCPEELYELMRLCWK  241 (260)
T ss_pred             HHHHHHHcCCCC-------------------------------------------------CCCCCCCHHHHHHHHHHcc
Confidence            544433221100                                                 0112345689999999999


Q ss_pred             cCCCCCCCHHHHhc
Q 013941          405 YDPAERLKAREALR  418 (433)
Q Consensus       405 ~dP~~R~ta~ell~  418 (433)
                      .||++|||++++++
T Consensus       242 ~~p~~Rp~~~~l~~  255 (260)
T cd05067         242 EKPEERPTFEYLRS  255 (260)
T ss_pred             CChhhCCCHHHHHH
Confidence            99999999999874

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.2e-41  Score=314.00  Aligned_cols=254  Identities=23%  Similarity=0.391  Sum_probs=201.5

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .|++.+.||+|+||.||+|.+..+++.||+|.++..  ......+.+|+.+++.+.+  ..|++++++++++..+...|+
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~--~~~~~vi~~~~~~~~~~~~~l   79 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQ--SQPPNITKYYGSYLKGPRLWI   79 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhcc--CCCCCeeeEeeeeeeCCEEEE
Confidence            488899999999999999999999999999998643  2334567789999999973  234555999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++...   .+++..+..++.||+.||.|||+.||+|+||+|+||+++.++                  
T Consensus        80 v~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~------------------  138 (277)
T cd06917          80 IMEYAEGGSVRTLMKAG---PIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTG------------------  138 (277)
T ss_pred             EEecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCC------------------
Confidence            99999 99999998654   689999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                               .++|+|||.+......   .....|+..|+|||.+.+. .++.++|+|||||++|+|++|..||.......
T Consensus       139 ---------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~  209 (277)
T cd06917         139 ---------NVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFR  209 (277)
T ss_pred             ---------CEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhh
Confidence                     4566666665543222   2234688899999998754 57899999999999999999999997654432


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+...   .+.                                          ..   .....+.++.++|.+||+.
T Consensus       210 ~~~~~~~~---~~~------------------------------------------~~---~~~~~~~~~~~~i~~~l~~  241 (277)
T cd06917         210 AMMLIPKS---KPP------------------------------------------RL---EDNGYSKLLREFVAACLDE  241 (277)
T ss_pred             hhhccccC---CCC------------------------------------------CC---CcccCCHHHHHHHHHHcCC
Confidence            22111000   000                                          00   0012456899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCc
Q 013941          406 DPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||++|||+.++++|+||++..
T Consensus       242 ~p~~R~~~~~il~~~~~~~~~  262 (277)
T cd06917         242 EPKERLSAEELLKSKWIKAHS  262 (277)
T ss_pred             CcccCcCHHHHhhChHhhccc
Confidence            999999999999999998753

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=2.9e-41  Score=314.41  Aligned_cols=250  Identities=27%  Similarity=0.435  Sum_probs=202.6

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      -|++.+.||+|+||.||+|.+..+++.||||++....  .....+.+|+.++.++.|+++     +++++.+..++..++
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~~~l   79 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV-----TKYYGSYLKDTKLWI   79 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCE-----eEEEEEEEeCCeEEE
Confidence            3788999999999999999998999999999976432  334567789999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++...   .+++..+..++.|++.||.|||++|++|+||||+||+++.++                  
T Consensus        80 v~e~~~~~~l~~~i~~~---~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~------------------  138 (277)
T cd06641          80 IMEYLGGGSALDLLEPG---PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHG------------------  138 (277)
T ss_pred             EEEeCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCC------------------
Confidence            99999 88999998753   589999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                               .++|+|||++......   .....|+..|+|||.+.+..++.++|+|||||++|+|++|..||........
T Consensus       139 ---------~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~  209 (277)
T cd06641         139 ---------EVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKV  209 (277)
T ss_pred             ---------CEEEeecccceecccchhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHHH
Confidence                     4566666655433221   1224678899999999888889999999999999999999999976554333


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+...  ..+                                               .....++.++.++|.+||+.+
T Consensus       210 ~~~~~~~--~~~-----------------------------------------------~~~~~~~~~~~~~i~~~l~~~  240 (277)
T cd06641         210 LFLIPKN--NPP-----------------------------------------------TLEGNYSKPLKEFVEACLNKE  240 (277)
T ss_pred             HHHHhcC--CCC-----------------------------------------------CCCcccCHHHHHHHHHHccCC
Confidence            3222110  000                                               011234668999999999999


Q ss_pred             CCCCCCHHHHhcCCCCCCCc
Q 013941          407 PAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       407 P~~R~ta~ell~hp~f~~~~  426 (433)
                      |++||++.++++||||.+..
T Consensus       241 p~~Rp~~~~~l~~~~~~~~~  260 (277)
T cd06641         241 PSFRPTAKELLKHKFIVRFA  260 (277)
T ss_pred             hhhCcCHHHHHhCHHHhhhh
Confidence            99999999999999998643

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=3.1e-41  Score=346.65  Aligned_cols=268  Identities=20%  Similarity=0.253  Sum_probs=198.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.++||+|+||.||+|++..+++.||+|+++..    ....+.+.+|+.++.++.|+|+     +++++++.+++.
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNI-----Vkl~~v~~d~~~   76 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGI-----VPVYSICSDGDP   76 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCc-----CeEEEEEeeCCE
Confidence            5799999999999999999999999999999998643    2334568889999999998887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcC---------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNS---------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~---------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      .|+||||+ |++|.+++....         ...++...+..++.||+.||+|||++||+||||||+|||++.+|.++|+|
T Consensus        77 lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiD  156 (932)
T PRK13184         77 VYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILD  156 (932)
T ss_pred             EEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEe
Confidence            99999999 999999986421         12356677889999999999999999999999999999999888877777


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                      ||++...........      ......-+............+||+.|+|||++.+..++.++|||||||++|||++|..|
T Consensus       157 FGLAk~i~~~~~~~~------~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~P  230 (932)
T PRK13184        157 WGAAIFKKLEEEDLL------DIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFP  230 (932)
T ss_pred             cCcceeccccccccc------ccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCC
Confidence            777654422111000      00000000000001112235799999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...........  .... .|.                                            .......+++.+.+
T Consensus       231 F~~~~~~ki~~~--~~i~-~P~--------------------------------------------~~~p~~~iP~~L~~  263 (932)
T PRK13184        231 YRRKKGRKISYR--DVIL-SPI--------------------------------------------EVAPYREIPPFLSQ  263 (932)
T ss_pred             CCCcchhhhhhh--hhcc-Chh--------------------------------------------hccccccCCHHHHH
Confidence            976443221110  0000 000                                            00011245678999


Q ss_pred             HHHHhcccCCCCCCCHHHHh
Q 013941          398 LLQGLLRYDPAERLKAREAL  417 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell  417 (433)
                      ++.+||+.||++|++..+.+
T Consensus       264 LI~rcL~~DP~kR~ss~eeL  283 (932)
T PRK13184        264 IAMKALAVDPAERYSSVQEL  283 (932)
T ss_pred             HHHHHccCChhhCcCHHHHH
Confidence            99999999999998765544

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=4.1e-41  Score=310.38  Aligned_cols=244  Identities=25%  Similarity=0.369  Sum_probs=194.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .++|++.++||+|+||.||+|.+. ++..||+|.+.......+.+.+|+.++++++|+++     +++++++. .+..++
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~-~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i-----~~~~~~~~-~~~~~l   77 (260)
T cd05070           5 RESLQLIKKLGNGQFGEVWMGTWN-GNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKL-----VQLYAVVS-EEPIYI   77 (260)
T ss_pred             hHHhhhhheeccccCceEEEEEec-CCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCce-----EEEEeEEC-CCCcEE
Confidence            357999999999999999999865 55669999987655555678899999999998877     88888875 456899


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..++.++.||+.||+|||++||+||||||+||++++++.                 
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~-----------------  140 (260)
T cd05070          78 VTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLV-----------------  140 (260)
T ss_pred             EEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCce-----------------
Confidence            99999 899999998655456899999999999999999999999999999999999977654                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                                ++|+|||.+.......    ....++..|+|||++.+..++.++||||||+++|+|++ |..||.+.+..
T Consensus       141 ----------~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~  210 (260)
T cd05070         141 ----------CKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR  210 (260)
T ss_pred             ----------EEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHH
Confidence                      5566666554332211    11234567999999988889999999999999999999 89999876655


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+.... ..                                                ......+..+.+|+.+||.
T Consensus       211 ~~~~~~~~~~-~~------------------------------------------------~~~~~~~~~~~~li~~~l~  241 (260)
T cd05070         211 EVLEQVERGY-RM------------------------------------------------PCPQDCPISLHELMLQCWK  241 (260)
T ss_pred             HHHHHHHcCC-CC------------------------------------------------CCCCcCCHHHHHHHHHHcc
Confidence            5444332210 00                                                0112346689999999999


Q ss_pred             cCCCCCCCHHHHh
Q 013941          405 YDPAERLKAREAL  417 (433)
Q Consensus       405 ~dP~~R~ta~ell  417 (433)
                      .||++|||+.+++
T Consensus       242 ~~p~~Rpt~~~l~  254 (260)
T cd05070         242 KDPEERPTFEYLQ  254 (260)
T ss_pred             cCcccCcCHHHHH
Confidence            9999999999986

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=2e-41  Score=312.58  Aligned_cols=245  Identities=23%  Similarity=0.348  Sum_probs=199.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ..|++.++||.|+||.||+|.+.. ++.+|+|++..... ....+..|+.+++.++|+++     +++++++...+..++
T Consensus         6 ~~y~~~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~l   79 (261)
T cd05148           6 EEFTLERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHL-----ISLFAVCSVGEPVYI   79 (261)
T ss_pred             HHHHHhhhhccCCCccEEEeEecC-CCcEEEEeccccchhhHHHHHHHHHHHhcCCCcch-----hheeeeEecCCCeEE
Confidence            469999999999999999999877 88899999876543 45678889999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.||+.||+|||++||+|+||||+||+++.++.                 
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~-----------------  142 (261)
T cd05148          80 ITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLV-----------------  142 (261)
T ss_pred             EEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCce-----------------
Confidence            99999 899999998765567899999999999999999999999999999999999987665                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                                ++|+|||.+.......   ....++..|+|||.+.+..++.++||||||+++|+|++ |..||...+..+
T Consensus       143 ----------~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~~  212 (261)
T cd05148         143 ----------CKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHE  212 (261)
T ss_pred             ----------EEEccccchhhcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHHH
Confidence                      4555555544322111   11245668999999998889999999999999999998 899998766555


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+.....                                                 .......+.++.++|.+||+.
T Consensus       213 ~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~i~~~l~~  243 (261)
T cd05148         213 VYDQITAGYR-------------------------------------------------MPCPAKCPQEIYKIMLECWAA  243 (261)
T ss_pred             HHHHHHhCCc-------------------------------------------------CCCCCCCCHHHHHHHHHHcCC
Confidence            4443332100                                                 001134467899999999999


Q ss_pred             CCCCCCCHHHHhc
Q 013941          406 DPAERLKAREALR  418 (433)
Q Consensus       406 dP~~R~ta~ell~  418 (433)
                      ||++|||+.++++
T Consensus       244 ~p~~Rpt~~~l~~  256 (261)
T cd05148         244 EPEDRPSFKALRE  256 (261)
T ss_pred             CchhCcCHHHHHH
Confidence            9999999999875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-40  Score=306.27  Aligned_cols=247  Identities=30%  Similarity=0.464  Sum_probs=204.4

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++.+.||+|++|.||++++..+++.||+|.+....   ...+.+.+|++++.++.|+++     +++++++.+++..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~   75 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNI-----VKYIGSIETSDSLY   75 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCc-----cEEEEEEEeCCEEE
Confidence            5889999999999999999999999999999987654   345678889999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++....  .+++..+..++.|++.||.|||++||+||||||+||+++.++                 
T Consensus        76 ~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~-----------------  136 (254)
T cd06627          76 IILEYAENGSLRQIIKKFG--PFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDG-----------------  136 (254)
T ss_pred             EEEecCCCCcHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCC-----------------
Confidence            999999 889999998764  799999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .++|+|||.+.......   ....++..|+|||.+.+..++.++||||||+++|+|++|..||.......
T Consensus       137 ----------~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~  206 (254)
T cd06627         137 ----------VVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMA  206 (254)
T ss_pred             ----------CEEEeccccceecCCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHH
Confidence                      45666666665443322   23467889999999988888999999999999999999999997655433


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+..  ...                                               .......+..+.++|.+||..
T Consensus       207 ~~~~~~~--~~~-----------------------------------------------~~~~~~~~~~~~~~i~~~l~~  237 (254)
T cd06627         207 ALFRIVQ--DDH-----------------------------------------------PPLPEGISPELKDFLMQCFQK  237 (254)
T ss_pred             HHHHHhc--cCC-----------------------------------------------CCCCCCCCHHHHHHHHHHHhC
Confidence            3222211  000                                               011224467899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      +|++|||+.+++.||||
T Consensus       238 ~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         238 DPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             ChhhCcCHHHHhcCCCC
Confidence            99999999999999998

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=2.1e-41  Score=323.62  Aligned_cols=248  Identities=21%  Similarity=0.336  Sum_probs=190.7

Q ss_pred             CCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ++|++.+.||+|+||.||+|.+.     .+++.||+|+++...  ...+.+.+|+.++.++ .|+|+     +++++++.
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~ni-----v~~~~~~~   81 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNV-----VNLLGACT   81 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcch-----hheeeeEe
Confidence            47999999999999999999743     345789999987432  2335677899999999 67777     99998775


Q ss_pred             c-CCeEEEEEccC-CCCHHHHHHhcCC-----------------------------------------------------
Q 013941          164 Y-RNHICIVFEKL-GPSLYDFLRKNSY-----------------------------------------------------  188 (433)
Q Consensus       164 ~-~~~~~lv~e~~-~~~L~~~l~~~~~-----------------------------------------------------  188 (433)
                      . +..++++|||+ +++|.+++.....                                                     
T Consensus        82 ~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (337)
T cd05054          82 KPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEE  161 (337)
T ss_pred             cCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchh
Confidence            4 56789999999 9999999864321                                                     


Q ss_pred             ------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeee
Q 013941          189 ------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL  262 (433)
Q Consensus       189 ------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl  262 (433)
                            ..+++..+..++.||+.||+|||++||+||||||+|||++.++                           .++|
T Consensus       162 ~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~---------------------------~vkL  214 (337)
T cd05054         162 GDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENN---------------------------VVKI  214 (337)
T ss_pred             hhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCC---------------------------cEEE
Confidence                  2578999999999999999999999999999999999997655                           4566


Q ss_pred             ecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcC
Q 013941          263 IDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGP  336 (433)
Q Consensus       263 ~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~  336 (433)
                      +|||++......     .....++..|+|||++.+..++.++|||||||++|||++ |..||.+....+.+...... +.
T Consensus       215 ~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~~~~~~~~-~~  293 (337)
T cd05054         215 CDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDEEFCRRLKE-GT  293 (337)
T ss_pred             eccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHhc-cC
Confidence            666666543211     112345678999999999999999999999999999998 99999764432222111100 00


Q ss_pred             CChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHH
Q 013941          337 LPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREA  416 (433)
Q Consensus       337 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~el  416 (433)
                                           .                          .......+.++.+++.+||+.+|++||++.|+
T Consensus       294 ---------------------~--------------------------~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~el  326 (337)
T cd05054         294 ---------------------R--------------------------MRAPEYATPEIYSIMLDCWHNNPEDRPTFSEL  326 (337)
T ss_pred             ---------------------C--------------------------CCCCccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence                                 0                          00112345689999999999999999999999


Q ss_pred             hcC
Q 013941          417 LRH  419 (433)
Q Consensus       417 l~h  419 (433)
                      ++|
T Consensus       327 l~~  329 (337)
T cd05054         327 VEI  329 (337)
T ss_pred             HHH
Confidence            875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=4.1e-41  Score=315.60  Aligned_cols=252  Identities=27%  Similarity=0.451  Sum_probs=202.7

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      |....+||+|+||.||++.+..+++.||+|.+.... .....+.+|+.+++.+.|+++     +++++.+..++..++||
T Consensus        22 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~~~lv~   96 (292)
T cd06657          22 LDNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENV-----VEMYNSYLVGDELWVVM   96 (292)
T ss_pred             hhhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcch-----hheeeEEEeCCEEEEEE
Confidence            445578999999999999999999999999886432 344567789999999988877     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++...   .+++..++.++.|++.||+|||++||+|+||||+||+++.++.                   
T Consensus        97 e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~-------------------  154 (292)
T cd06657          97 EFLEGGALTDIVTHT---RMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGR-------------------  154 (292)
T ss_pred             ecCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCC-------------------
Confidence            999 88999887543   5899999999999999999999999999999999999977664                   


Q ss_pred             cCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA  328 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~  328 (433)
                              ++|+|||++......   .....|+..|+|||.+.+..++.++|+||||+++|+|++|..||.+........
T Consensus       155 --------~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~~~~  226 (292)
T cd06657         155 --------VKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMK  226 (292)
T ss_pred             --------EEEcccccceecccccccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence                    455555554322211   122468889999999988888999999999999999999999998766555444


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.......                                               ......++..+.++|.+||+.||.
T Consensus       227 ~~~~~~~~~-----------------------------------------------~~~~~~~~~~l~~li~~~l~~~P~  259 (292)
T cd06657         227 MIRDNLPPK-----------------------------------------------LKNLHKVSPSLKGFLDRLLVRDPA  259 (292)
T ss_pred             HHHhhCCcc-----------------------------------------------cCCcccCCHHHHHHHHHHHhCCcc
Confidence            332211000                                               001123466889999999999999


Q ss_pred             CCCCHHHHhcCCCCCCCcc
Q 013941          409 ERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       409 ~R~ta~ell~hp~f~~~~~  427 (433)
                      +||++.++++||||.....
T Consensus       260 ~R~~~~~ll~~~~~~~~~~  278 (292)
T cd06657         260 QRATAAELLKHPFLAKAGP  278 (292)
T ss_pred             cCcCHHHHhcChHHhccCC
Confidence            9999999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=3.6e-41  Score=311.06  Aligned_cols=243  Identities=31%  Similarity=0.530  Sum_probs=197.8

Q ss_pred             ccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941          100 MGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus       100 lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ||.|+||.||+|++..+++.||+|++....    ...+.+.+|+.+++++.|+++     +++++.+..++..|+||||+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----~~~~~~~~~~~~~~lv~e~~   75 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYV-----VKLYYSFQGKKNLYLVMEYL   75 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcch-----hHHHHheecCcEEEEEEecC
Confidence            689999999999999999999999986533    344567789999999988877     99999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                       +++|.+++.+..  .+++..+..++.||+.||+|||++||+|+||+|+||+++.++.+                     
T Consensus        76 ~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~---------------------  132 (265)
T cd05579          76 PGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHL---------------------  132 (265)
T ss_pred             CCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCE---------------------
Confidence             889999998765  78999999999999999999999999999999999999876654                     


Q ss_pred             CCCCCeeeecCCCCccccC-----------CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          255 PKSSAIKLIDFGSTTFEHQ-----------DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                            +|+|||++.....           ......++..|+|||.+.+..++.++||||||+++|+|++|..||.....
T Consensus       133 ------~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~  206 (265)
T cd05579         133 ------KLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP  206 (265)
T ss_pred             ------EEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH
Confidence                  5555554432211           11234678899999999888899999999999999999999999987665


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+....                        ..++.                        ....+..+.++|.+||
T Consensus       207 ~~~~~~~~~~~------------------------~~~~~------------------------~~~~~~~~~~~i~~~l  238 (265)
T cd05579         207 EEIFQNILNGK------------------------IEWPE------------------------DVEVSDEAIDLISKLL  238 (265)
T ss_pred             HHHHHHHhcCC------------------------cCCCc------------------------cccCCHHHHHHHHHHh
Confidence            54443332211                        01111                        0113668999999999


Q ss_pred             ccCCCCCCCH---HHHhcCCCCCC
Q 013941          404 RYDPAERLKA---REALRHPFFTR  424 (433)
Q Consensus       404 ~~dP~~R~ta---~ell~hp~f~~  424 (433)
                      +.+|++|||+   .++++||||++
T Consensus       239 ~~~p~~Rpt~~~~~~~l~~~~~~~  262 (265)
T cd05579         239 VPDPEKRLGAKSIEEIKNHPFFKG  262 (265)
T ss_pred             cCCHhhcCCCccHHHHhcCccccC
Confidence            9999999999   99999999985

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=5.9e-41  Score=312.27  Aligned_cols=249  Identities=20%  Similarity=0.315  Sum_probs=194.6

Q ss_pred             cCCCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      ..++|++.+.||+|+||.||+|.+.     .++..||+|++....  .....+.+|+.+++.+.|+++     +++++++
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----v~~~~~~   78 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV-----VRLLGVV   78 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCe-----eeEEEEE
Confidence            3568999999999999999999864     245679999986432  234557789999999988877     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcCC--------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcc
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNSY--------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYV  233 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~~--------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~  233 (433)
                      ..++..++||||+ +++|.+++.....        ..+++..+..++.|++.||.|||+.|++||||||+||+++.++. 
T Consensus        79 ~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~-  157 (277)
T cd05062          79 SQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFT-  157 (277)
T ss_pred             cCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCC-
Confidence            9999999999999 8999999975321        23577889999999999999999999999999999999976654 


Q ss_pred             cccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHH
Q 013941          234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL  308 (433)
Q Consensus       234 ~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il  308 (433)
                                                ++|+|||++.......     ....++..|+|||++.+..++.++|||||||++
T Consensus       158 --------------------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l  211 (277)
T cd05062         158 --------------------------VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVL  211 (277)
T ss_pred             --------------------------EEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHH
Confidence                                      5666666554322111     112456789999999988899999999999999


Q ss_pred             HHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhc
Q 013941          309 VELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH  387 (433)
Q Consensus       309 ~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (433)
                      |||++ |..||.+.........+....  .+                                               ..
T Consensus       212 ~el~~~~~~p~~~~~~~~~~~~~~~~~--~~-----------------------------------------------~~  242 (277)
T cd05062         212 WEIATLAEQPYQGMSNEQVLRFVMEGG--LL-----------------------------------------------DK  242 (277)
T ss_pred             HHHHcCCCCCCCCCCHHHHHHHHHcCC--cC-----------------------------------------------CC
Confidence            99999 789998766544433322110  00                                               01


Q ss_pred             cCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       388 ~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ....+..+.++|.+||+.||++|||+.|++++
T Consensus       243 ~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  274 (277)
T cd05062         243 PDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  274 (277)
T ss_pred             CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            12345689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=7e-41  Score=313.58  Aligned_cols=253  Identities=21%  Similarity=0.336  Sum_probs=196.8

Q ss_pred             CCCeEEeccccccccEEEEEEEecC-----CCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNE-----KKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      .++|++.+.||+|+||.||+|..+.     .+..||+|.+....  .....+.+|+.+++.+.|+++     +++++++.
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~   79 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHV-----VRLLGVVS   79 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCe-----eeEEEEEc
Confidence            4689999999999999999997542     34579999886433  223456789999999988877     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcC--------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNS--------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~--------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~  234 (433)
                      ..+..|+||||+ +++|.+++....        ...++...+..++.||+.||.|||++||+||||||+||+++.++.  
T Consensus        80 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~--  157 (288)
T cd05061          80 KGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFT--  157 (288)
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCc--
Confidence            999999999999 999999997532        123466788999999999999999999999999999999976554  


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHH
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  309 (433)
                                               ++|+|||++.......     ....++..|+|||.+.+..++.++|||||||++|
T Consensus       158 -------------------------~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~  212 (288)
T cd05061         158 -------------------------VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLW  212 (288)
T ss_pred             -------------------------EEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHH
Confidence                                     5666666654322111     1124567899999999888999999999999999


Q ss_pred             HHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          310 ELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       310 el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      ||++ |..||.+....+....+...  ..+                                               ...
T Consensus       213 el~~~~~~p~~~~~~~~~~~~~~~~--~~~-----------------------------------------------~~~  243 (288)
T cd05061         213 EITSLAEQPYQGLSNEQVLKFVMDG--GYL-----------------------------------------------DQP  243 (288)
T ss_pred             HHHhCCCCCCCCCCHHHHHHHHHcC--CCC-----------------------------------------------CCC
Confidence            9998 78899776554433322110  000                                               011


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhc------CCCCCC
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALR------HPFFTR  424 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~------hp~f~~  424 (433)
                      ...+..+.++|.+||+.||++|||+.++++      ||||..
T Consensus       244 ~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~  285 (288)
T cd05061         244 DNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPE  285 (288)
T ss_pred             CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCC
Confidence            233568999999999999999999999987      999985

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=1e-40  Score=306.71  Aligned_cols=249  Identities=30%  Similarity=0.533  Sum_probs=204.3

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++.+.||.|+||.||++.+..+++.||+|++....   .....+.+|+++++.++|+++     +++.+.+..++..+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~-----~~~~~~~~~~~~~~   75 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNI-----IKYYESFEEKGKLC   75 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCCh-----hheEEEEecCCEEE
Confidence            5899999999999999999999999999999987532   345667889999999998877     99999998899999


Q ss_pred             EEEccC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+|++ +++|.+++....  ...+++..+..++.||+.||.|||++|++|+||+|+||+++.++.              
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~--------------  141 (258)
T cd08215          76 IVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGL--------------  141 (258)
T ss_pred             EEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCc--------------
Confidence            999999 889999998642  247999999999999999999999999999999999999976554              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                   ++|+|||.+......   .....|++.|+|||.+.+..++.++|+||+|+++|+|++|..||...+.
T Consensus       142 -------------~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~  208 (258)
T cd08215         142 -------------VKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENL  208 (258)
T ss_pred             -------------EEECCccceeecccCcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcH
Confidence                         566666655443222   1224688899999999888899999999999999999999999977654


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+.+..  .                                               .......+..+.++|.+||
T Consensus       209 ~~~~~~~~~~~--~-----------------------------------------------~~~~~~~~~~~~~~i~~~l  239 (258)
T cd08215         209 LELALKILKGQ--Y-----------------------------------------------PPIPSQYSSELRNLVSSLL  239 (258)
T ss_pred             HHHHHHHhcCC--C-----------------------------------------------CCCCCCCCHHHHHHHHHHc
Confidence            43333222110  0                                               0011234668999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCC
Q 013941          404 RYDPAERLKAREALRHPFF  422 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f  422 (433)
                      ..+|++|||+.++++||||
T Consensus       240 ~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         240 QKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             CCChhhCcCHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=8.4e-41  Score=313.04  Aligned_cols=246  Identities=22%  Similarity=0.341  Sum_probs=195.7

Q ss_pred             CCeEEeccccccccEEEEEEEe-----cCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~-----~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+|.+.+.||+|+||.||++.+     ..++..+|+|.+.... .....+.+|+.+++++.|+++     +++++++...
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~   79 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHI-----VKFYGVCVEG   79 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCc-----ceEEEEEecC
Confidence            4699999999999999999985     2345679999987533 345668889999999998888     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcC-----------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcc
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNS-----------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYV  233 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~-----------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~  233 (433)
                      +..++||||+ +++|.+++....           ...+++..+..++.||+.||+|||++||+||||||+|||++.++. 
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~-  158 (288)
T cd05093          80 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLL-  158 (288)
T ss_pred             CccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCc-
Confidence            9999999999 899999997542           124899999999999999999999999999999999999977664 


Q ss_pred             cccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHH
Q 013941          234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL  308 (433)
Q Consensus       234 ~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il  308 (433)
                                                ++|+|||++.......     ....++..|+|||++.+..++.++|||||||++
T Consensus       159 --------------------------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il  212 (288)
T cd05093         159 --------------------------VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVL  212 (288)
T ss_pred             --------------------------EEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHH
Confidence                                      5556666554322111     123457789999999988899999999999999


Q ss_pred             HHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhc
Q 013941          309 VELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH  387 (433)
Q Consensus       309 ~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (433)
                      |+|++ |..||...........+....  .+                                               ..
T Consensus       213 ~~l~t~g~~p~~~~~~~~~~~~i~~~~--~~-----------------------------------------------~~  243 (288)
T cd05093         213 WEIFTYGKQPWYQLSNNEVIECITQGR--VL-----------------------------------------------QR  243 (288)
T ss_pred             HHHHhCCCCCCCCCCHHHHHHHHHcCC--cC-----------------------------------------------CC
Confidence            99998 999998766555443332210  00                                               01


Q ss_pred             cCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          388 VDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       388 ~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      ....+.++.+|+.+||+.||.+|||+.++++
T Consensus       244 ~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~  274 (288)
T cd05093         244 PRTCPKEVYDLMLGCWQREPHMRLNIKEIHS  274 (288)
T ss_pred             CCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            1234668999999999999999999999853

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=8.9e-41  Score=316.53  Aligned_cols=253  Identities=25%  Similarity=0.375  Sum_probs=203.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .+.|...++||+|+||.||+|++..+++.||+|++....    .....+.+|+.+++.++|+++     +++++++.+.+
T Consensus        20 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~   94 (313)
T cd06633          20 EEIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNT-----IEYKGCYLKEH   94 (313)
T ss_pred             HHHhhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCC-----ccEEEEEEeCC
Confidence            345778889999999999999999999999999986422    233456789999999988887     99999999999


Q ss_pred             eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          167 HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       167 ~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ..|+||||+.++|.+++.... ..+++..+..++.||+.||.|||++||+|+||||+||+++.++               
T Consensus        95 ~~~lv~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~---------------  158 (313)
T cd06633          95 TAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPG---------------  158 (313)
T ss_pred             EEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCC---------------
Confidence            999999999778888886543 3689999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhh---CCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                  .++|+|||++..... .....|+..|+|||++.   ...++.++|||||||++|+|++|..||...+.
T Consensus       159 ------------~~kL~dfg~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~  225 (313)
T cd06633         159 ------------QVKLADFGSASKSSP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA  225 (313)
T ss_pred             ------------CEEEeecCCCcccCC-CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh
Confidence                        467777776654322 23357889999999985   34688999999999999999999999987665


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+...  ..|.                                              .....++..+.+||.+||
T Consensus       226 ~~~~~~~~~~--~~~~----------------------------------------------~~~~~~~~~l~~li~~~l  257 (313)
T cd06633         226 MSALYHIAQN--DSPT----------------------------------------------LQSNEWTDSFRGFVDYCL  257 (313)
T ss_pred             HHHHHHHHhc--CCCC----------------------------------------------CCccccCHHHHHHHHHHc
Confidence            4444333211  0000                                              001233557899999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCC
Q 013941          404 RYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +.+|.+||++.+++.||||+..
T Consensus       258 ~~~P~~Rp~~~~~l~~~~~~~~  279 (313)
T cd06633         258 QKIPQERPASAELLRHDFVRRD  279 (313)
T ss_pred             cCChhhCcCHHHHhcCcccCCC
Confidence            9999999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.3e-41  Score=308.90  Aligned_cols=244  Identities=21%  Similarity=0.322  Sum_probs=196.1

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +|++.+.||+|+||.||+|.+. ++..+|+|++.........+.+|+.+++.+.|+++     +++++++...+..|+||
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~-~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~lv~   78 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWR-GKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNL-----VQLYGVCTKQRPIFIVT   78 (256)
T ss_pred             HcchhhhhccCCCceEEEeEec-CCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCE-----EEEEEEEcCCCceEEEE
Confidence            5889999999999999999875 46679999987655455677889999999988777     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+||+++.++.                   
T Consensus        79 e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~-------------------  138 (256)
T cd05059          79 EYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNV-------------------  138 (256)
T ss_pred             ecCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCc-------------------
Confidence            999 999999997654 36899999999999999999999999999999999999976654                   


Q ss_pred             cCCCCCCCeeeecCCCCccccCCCc----ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQDHS----YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEH  326 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~  326 (433)
                              ++|+|||.+........    ...++..|+|||.+.+..++.++|||||||++|+|++ |..||...+..+.
T Consensus       139 --------~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~  210 (256)
T cd05059         139 --------VKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEV  210 (256)
T ss_pred             --------EEECCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHH
Confidence                    56666665543322111    1123457999999998899999999999999999999 8999987665544


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+.....                                                 .......+.++.+++.+||..+
T Consensus       211 ~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~li~~cl~~~  241 (256)
T cd05059         211 VESVSAGYR-------------------------------------------------LYRPKLAPTEVYTIMYSCWHEK  241 (256)
T ss_pred             HHHHHcCCc-------------------------------------------------CCCCCCCCHHHHHHHHHHhcCC
Confidence            433321100                                                 0011234678999999999999


Q ss_pred             CCCCCCHHHHhcC
Q 013941          407 PAERLKAREALRH  419 (433)
Q Consensus       407 P~~R~ta~ell~h  419 (433)
                      |++|||+.|+++.
T Consensus       242 p~~Rpt~~~~l~~  254 (256)
T cd05059         242 PEDRPAFKKLLSQ  254 (256)
T ss_pred             hhhCcCHHHHHHH
Confidence            9999999999863

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.5e-40  Score=304.37  Aligned_cols=248  Identities=29%  Similarity=0.523  Sum_probs=205.4

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      |++.+.||+|++|.||++.+..+++.+++|++..... ....+.+|+.+++++.|+++     +++++++...+..++++
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~l~~   76 (253)
T cd05122           2 FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNI-----VKYYGSYLKKDELWIVM   76 (253)
T ss_pred             ceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCE-----eEEEEEEecCCeEEEEE
Confidence            8889999999999999999998999999999876443 55678889999999988776     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++.... ..+++..+..++.|++.||.+||++|++|+||+|+||+++.++                    
T Consensus        77 e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~--------------------  135 (253)
T cd05122          77 EFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDG--------------------  135 (253)
T ss_pred             ecCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCC--------------------
Confidence            999 799999987753 4689999999999999999999999999999999999997654                    


Q ss_pred             cCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM  329 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~  329 (433)
                             .++|+|||.+.......  ....|+..|+|||.+.+..++.++||||||+++|+|++|..||...+.......
T Consensus       136 -------~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~  208 (253)
T cd05122         136 -------EVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFK  208 (253)
T ss_pred             -------eEEEeeccccccccccccccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence                   56777777776544432  445788999999999988889999999999999999999999987654443332


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAE  409 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  409 (433)
                      +...  ..+.                                             ......++..+.++|.+||+.||++
T Consensus       209 ~~~~--~~~~---------------------------------------------~~~~~~~~~~~~~~i~~~l~~~p~~  241 (253)
T cd05122         209 IATN--GPPG---------------------------------------------LRNPEKWSDEFKDFLKKCLQKNPEK  241 (253)
T ss_pred             HHhc--CCCC---------------------------------------------cCcccccCHHHHHHHHHHccCChhh
Confidence            2210  0000                                             0001123568999999999999999


Q ss_pred             CCCHHHHhcCCC
Q 013941          410 RLKAREALRHPF  421 (433)
Q Consensus       410 R~ta~ell~hp~  421 (433)
                      |||+.|+++|||
T Consensus       242 R~t~~~~l~~~~  253 (253)
T cd05122         242 RPTAEQLLKHPF  253 (253)
T ss_pred             CCCHHHHhcCCC
Confidence            999999999999

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=6.3e-41  Score=307.61  Aligned_cols=239  Identities=21%  Similarity=0.357  Sum_probs=189.0

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      +.||+|+||.||+|++..+++.||+|.+...  ......+.+|+++++.+.|+++     +++++++...+..++||||+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~lv~e~~   75 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNI-----VRLIGVCTQKQPIYIVMELV   75 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCc-----ceEEEEEcCCCCeEEEEeec
Confidence            4799999999999999999999999987643  2345678889999999988887     99999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                       +++|.+++.... ..+++..++.++.|++.||.|||++||+||||||+|||++.++.                      
T Consensus        76 ~~~~L~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~----------------------  132 (252)
T cd05084          76 QGGDFLTFLRTEG-PRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNV----------------------  132 (252)
T ss_pred             cCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCc----------------------
Confidence             999999997643 35899999999999999999999999999999999999977664                      


Q ss_pred             CCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLA  328 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~  328 (433)
                           ++|+|||.+.......     ....++..|+|||.+.+..++.++|||||||++|+|++ |..||..........
T Consensus       133 -----~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~  207 (252)
T cd05084         133 -----LKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTRE  207 (252)
T ss_pred             -----EEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHH
Confidence                 4555555544322111     01122456999999998889999999999999999998 899997655443322


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+....                       .                          .......+..+.+|+.+||+.||+
T Consensus       208 ~~~~~~-----------------------~--------------------------~~~~~~~~~~~~~li~~~l~~~p~  238 (252)
T cd05084         208 AIEQGV-----------------------R--------------------------LPCPELCPDAVYRLMERCWEYDPG  238 (252)
T ss_pred             HHHcCC-----------------------C--------------------------CCCcccCCHHHHHHHHHHcCCChh
Confidence            221100                       0                          001123466899999999999999


Q ss_pred             CCCCHHHHhc
Q 013941          409 ERLKAREALR  418 (433)
Q Consensus       409 ~R~ta~ell~  418 (433)
                      +|||+.++++
T Consensus       239 ~Rps~~~~~~  248 (252)
T cd05084         239 QRPSFSTVHQ  248 (252)
T ss_pred             hCcCHHHHHH
Confidence            9999999974

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=7.5e-41  Score=307.87  Aligned_cols=243  Identities=22%  Similarity=0.327  Sum_probs=195.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEeccee-ccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF-DYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~-~~~~~~~l  170 (433)
                      .+|++.+.||+|+||.||++...  +..||+|.++... ..+.+.+|+.+++++.|+++     +++++++ ..++..++
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~--~~~~~~k~~~~~~-~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~~l   77 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNL-----VQLLGVIVEEKGGLYI   77 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEc--CCcEEEEEeCCCc-hHHHHHHHHHHHHhCCCCCe-----eeEEEEEEcCCCceEE
Confidence            36999999999999999999754  7779999986533 34567889999999988877     9988864 45678999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.||+.||+|||++||+||||||+||+++.++                  
T Consensus        78 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~------------------  139 (256)
T cd05082          78 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDN------------------  139 (256)
T ss_pred             EEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCC------------------
Confidence            99999 88999999876655689999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLA  328 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~  328 (433)
                               .+||+|||++...........++..|+|||++.+..++.++|||||||++|+|++ |..||......+...
T Consensus       140 ---------~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~  210 (256)
T cd05082         140 ---------VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVP  210 (256)
T ss_pred             ---------cEEecCCccceeccccCCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence                     4677777766544433333455678999999998889999999999999999998 999997655444333


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.....                                                 ....+..+..+.++|.+||+.||+
T Consensus       211 ~~~~~~~-------------------------------------------------~~~~~~~~~~~~~li~~~l~~~p~  241 (256)
T cd05082         211 RVEKGYK-------------------------------------------------MDAPDGCPPVVYDVMKQCWHLDAA  241 (256)
T ss_pred             HHhcCCC-------------------------------------------------CCCCCCCCHHHHHHHHHHhcCChh
Confidence            3221100                                                 011134467899999999999999


Q ss_pred             CCCCHHHHhc
Q 013941          409 ERLKAREALR  418 (433)
Q Consensus       409 ~R~ta~ell~  418 (433)
                      +|||+.++++
T Consensus       242 ~Rpt~~~l~~  251 (256)
T cd05082         242 TRPSFLQLRE  251 (256)
T ss_pred             hCcCHHHHHH
Confidence            9999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=1.3e-40  Score=316.07  Aligned_cols=257  Identities=25%  Similarity=0.377  Sum_probs=205.1

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      ......|...+.||+|+||.||+|.+..++..||+|++....    .....+.+|+.+++.+.|+++     +++++++.
T Consensus        21 ~~~~~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~   95 (317)
T cd06635          21 EDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNS-----IEYKGCYL   95 (317)
T ss_pred             CCchhhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCE-----EEEEEEEe
Confidence            334455889999999999999999999999999999986432    233467789999999988877     99999999


Q ss_pred             cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          164 YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       164 ~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      .++..++||||+.++|.+++.... ..+++..+..++.||+.||.|||++||+||||+|+||+++.++            
T Consensus        96 ~~~~~~lv~e~~~g~l~~~~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~------------  162 (317)
T cd06635          96 REHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPG------------  162 (317)
T ss_pred             eCCeEEEEEeCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCC------------
Confidence            999999999999778888876543 3689999999999999999999999999999999999996655            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhh---CCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                     .++|+|||++..... .....|+..|+|||++.   +..++.++|||||||++|+|++|..||..
T Consensus       163 ---------------~~kl~dfg~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~  226 (317)
T cd06635         163 ---------------QVKLADFGSASIASP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN  226 (317)
T ss_pred             ---------------CEEEecCCCccccCC-cccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence                           467777776654332 22346888999999984   34688999999999999999999999977


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+.......+.......                                                ......+..+.+||.
T Consensus       227 ~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~li~  258 (317)
T cd06635         227 MNAMSALYHIAQNESPT------------------------------------------------LQSNEWSDYFRNFVD  258 (317)
T ss_pred             ccHHHHHHHHHhccCCC------------------------------------------------CCCccccHHHHHHHH
Confidence            65544433332211000                                                001234568999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      +||+.+|.+|||+.++++|+|+....
T Consensus       259 ~~l~~~p~~Rpt~~~il~~~~~~~~~  284 (317)
T cd06635         259 SCLQKIPQDRPTSEELLKHMFVLRER  284 (317)
T ss_pred             HHccCCcccCcCHHHHHhChhhhccC
Confidence            99999999999999999999997653

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=5.5e-41  Score=316.56  Aligned_cols=247  Identities=21%  Similarity=0.282  Sum_probs=192.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcE--EEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKEL--VAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~--vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||.||+|.+..++..  +|+|.+...  ......+.+|+.++.++ .|+++     +++++++..++
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~i-----v~~~~~~~~~~   81 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI-----INLLGACEHRG   81 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCc-----ceEEEEECCCC
Confidence            4699999999999999999998877754  577776532  23345677899999999 67777     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      .+|+||||+ +++|.+++....              ...+++..++.++.||+.||+|||++||+||||||+|||++.++
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~  161 (303)
T cd05088          82 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  161 (303)
T ss_pred             CceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCC
Confidence            999999999 899999997542              13578999999999999999999999999999999999997655


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcc--cccCCcccchhhhhCCCCCccchHHHHHHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~--~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  309 (433)
                                                 .++|+|||++.........  ..++..|+|||++.+..++.++|||||||++|
T Consensus       162 ---------------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  214 (303)
T cd05088         162 ---------------------------VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLW  214 (303)
T ss_pred             ---------------------------cEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHH
Confidence                                       4566666666432211111  13356799999998888999999999999999


Q ss_pred             HHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          310 ELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       310 el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      +|++ |..||.+.+..+....+....                         .                        ....
T Consensus       215 ellt~g~~p~~~~~~~~~~~~~~~~~-------------------------~------------------------~~~~  245 (303)
T cd05088         215 EIVSLGGTPYCGMTCAELYEKLPQGY-------------------------R------------------------LEKP  245 (303)
T ss_pred             HHHhcCCCCcccCChHHHHHHHhcCC-------------------------c------------------------CCCC
Confidence            9998 999997665544332221100                         0                        0011


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ...+.++.+||.+||+.||++||++++++++
T Consensus       246 ~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  276 (303)
T cd05088         246 LNCDDEVYDLMRQCWREKPYERPSFAQILVS  276 (303)
T ss_pred             CCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            2345688999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=1.1e-40  Score=307.43  Aligned_cols=244  Identities=25%  Similarity=0.364  Sum_probs=194.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.++||+|+||.||+|.+..++ .+|+|.+.......+.+.+|+.+++.+.|+++     +++++++. .+..++|
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~-~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~-~~~~~~v   78 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTT-KVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKL-----VPLYAVVS-EEPIYIV   78 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCc-eEEEEEcccCCccHHHHHHHHHHHHhCCCCCe-----eeEEEEEc-CCCcEEE
Confidence            57999999999999999999876554 59999987655555678889999999988877     88888775 4568999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.......+++..+..++.||+.||.|||+.||+|+||||+||++++++                   
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~-------------------  139 (260)
T cd05069          79 TEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNL-------------------  139 (260)
T ss_pred             EEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCC-------------------
Confidence            9999 88999999875545689999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                              .++|+|||.+.......    ....++..|+|||...+..++.++|||||||++|+|++ |..||.+....+
T Consensus       140 --------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~  211 (260)
T cd05069         140 --------VCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNRE  211 (260)
T ss_pred             --------eEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence                    45666666664332211    11245678999999988889999999999999999999 999998766555


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+..... .                                                ......+..+.+++.+||..
T Consensus       212 ~~~~~~~~~~-~------------------------------------------------~~~~~~~~~~~~li~~~l~~  242 (260)
T cd05069         212 VLEQVERGYR-M------------------------------------------------PCPQGCPESLHELMKLCWKK  242 (260)
T ss_pred             HHHHHHcCCC-C------------------------------------------------CCCcccCHHHHHHHHHHccC
Confidence            4433322100 0                                                01123456899999999999


Q ss_pred             CCCCCCCHHHHhc
Q 013941          406 DPAERLKAREALR  418 (433)
Q Consensus       406 dP~~R~ta~ell~  418 (433)
                      ||++||+++++++
T Consensus       243 ~p~~Rp~~~~i~~  255 (260)
T cd05069         243 DPDERPTFEYIQS  255 (260)
T ss_pred             CcccCcCHHHHHH
Confidence            9999999999874

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-40  Score=306.56  Aligned_cols=244  Identities=22%  Similarity=0.328  Sum_probs=199.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      +.|++.+.||.|+||.||+|...  ++.||+|.+.......+.+.+|+.+++.+.|+++     +++++++.+.+..++|
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~~--~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~~v   78 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDYR--GQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNL-----VQLLGVVLQGNPLYIV   78 (256)
T ss_pred             hhccceeeeecCCCceEEEEEec--CcEEEEEEeccchhHHHHHHHHHHHHHhcCCcce-----eeeEEEEcCCCCeEEE
Confidence            46899999999999999999864  7889999998665556678889999999988877     9999999989999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.......+++..+..++.|++.||.|||++||+||||||+||+++.++                   
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~-------------------  139 (256)
T cd05039          79 TEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDL-------------------  139 (256)
T ss_pred             EEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCC-------------------
Confidence            9999 88999999876545799999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAM  329 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~  329 (433)
                              .++|+|||.+...........++..|+|||.+.+..++.++||||||+++|+|++ |..||......+....
T Consensus       140 --------~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~  211 (256)
T cd05039         140 --------VAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPH  211 (256)
T ss_pred             --------CEEEcccccccccccccccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence                    4667777766554333333344567999999988889999999999999999997 9999976654443322


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAE  409 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  409 (433)
                      +....                       .                          .......++.+.++|.+||..+|++
T Consensus       212 ~~~~~-----------------------~--------------------------~~~~~~~~~~~~~li~~~l~~~p~~  242 (256)
T cd05039         212 VEKGY-----------------------R--------------------------MEAPEGCPPEVYKVMKDCWELDPAK  242 (256)
T ss_pred             HhcCC-----------------------C--------------------------CCCccCCCHHHHHHHHHHhccChhh
Confidence            21100                       0                          0011234678999999999999999


Q ss_pred             CCCHHHHhc
Q 013941          410 RLKAREALR  418 (433)
Q Consensus       410 R~ta~ell~  418 (433)
                      |||+.++++
T Consensus       243 Rp~~~~l~~  251 (256)
T cd05039         243 RPTFKQLRE  251 (256)
T ss_pred             CcCHHHHHH
Confidence            999999985

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=8.2e-41  Score=312.30  Aligned_cols=247  Identities=21%  Similarity=0.334  Sum_probs=195.0

Q ss_pred             CCeEEeccccccccEEEEEEEe----cCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFD----NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~----~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ..|++.+.||+|+||.||+|..    ..+++.||+|.+....  .....+.+|+.+++++.|+|+     +++++++..+
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~   79 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNI-----VCLLGVVTQE   79 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCe-----eeEEEEEecC
Confidence            3589999999999999999985    3456789999987432  233567789999999988877     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcC---------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNS---------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~---------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                      +..|+||||+ +++|.+++....               ...+++..+..++.||+.||.|||++||+||||||+|||++.
T Consensus        80 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~  159 (283)
T cd05090          80 QPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGE  159 (283)
T ss_pred             CceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcC
Confidence            9999999999 899999986332               124788999999999999999999999999999999999976


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHH
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSV  304 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  304 (433)
                      ++                           .++|+|||++......     .....++..|+|||++.+..++.++|||||
T Consensus       160 ~~---------------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~sl  212 (283)
T cd05090         160 QL---------------------------HVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSF  212 (283)
T ss_pred             CC---------------------------cEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHH
Confidence            55                           4566666666433211     122345678999999988889999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhh
Q 013941          305 GCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL  383 (433)
Q Consensus       305 G~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (433)
                      ||++|||++ |..||.+.........+.... .+                                              
T Consensus       213 G~il~el~~~g~~p~~~~~~~~~~~~~~~~~-~~----------------------------------------------  245 (283)
T cd05090         213 GVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQ-LL----------------------------------------------  245 (283)
T ss_pred             HHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC-cC----------------------------------------------
Confidence            999999998 999998766544433332110 00                                              


Q ss_pred             hhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       384 ~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                        .....++..+.+++.+||+.||++||++.+|+++
T Consensus       246 --~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~  279 (283)
T cd05090         246 --PCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTR  279 (283)
T ss_pred             --CCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence              0112346689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-40  Score=306.47  Aligned_cols=246  Identities=25%  Similarity=0.342  Sum_probs=199.8

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .++|++.+.||+|+||.||+|.+. +++.||||.+.........+.+|+.+++++.|+++     +++++++......++
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~-~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~~   78 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWN-GTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKL-----VQLYAVCSEEEPIYI   78 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEc-CCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCE-----eeeeeeeecCCceEE
Confidence            467999999999999999999975 45779999998666556778899999999988777     999999998899999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.||+.||.|||++||+|+||||+||++++++                  
T Consensus        79 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~------------------  140 (261)
T cd05034          79 VTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENL------------------  140 (261)
T ss_pred             EEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCC------------------
Confidence            99999 89999999876555799999999999999999999999999999999999997665                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                               .++|+|||.+.......    ....++..|+|||.+.+..++.++|||||||++|+|++ |+.||.+....
T Consensus       141 ---------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~  211 (261)
T cd05034         141 ---------VCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNR  211 (261)
T ss_pred             ---------CEEECccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence                     45666666654432211    11234567999999998889999999999999999998 99999877655


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+......                                                 ......+.++.+++.+||+
T Consensus       212 ~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~i~~~l~  242 (261)
T cd05034         212 EVLEQVERGYRM-------------------------------------------------PRPPNCPEELYDLMLQCWD  242 (261)
T ss_pred             HHHHHHHcCCCC-------------------------------------------------CCCCCCCHHHHHHHHHHcc
Confidence            544443221100                                                 0012235689999999999


Q ss_pred             cCCCCCCCHHHHhc
Q 013941          405 YDPAERLKAREALR  418 (433)
Q Consensus       405 ~dP~~R~ta~ell~  418 (433)
                      .||++||+++++++
T Consensus       243 ~~p~~Rp~~~~l~~  256 (261)
T cd05034         243 KDPEERPTFEYLQS  256 (261)
T ss_pred             cCcccCCCHHHHHH
Confidence            99999999999873

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=7.3e-41  Score=317.67  Aligned_cols=245  Identities=21%  Similarity=0.298  Sum_probs=192.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc----EEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE----LVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+|++.+.||+|+||.||+|++..+++    .||+|+++..  ....+.+.+|+.+++.+.|+|+     +++++++...
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-----v~~~g~~~~~   81 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV-----CRLLGICLTS   81 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEcCC
Confidence            469999999999999999999766665    3899998643  2345677889999999999888     9999988764


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                       ..++|+||+ +|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.            
T Consensus        82 -~~~~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~------------  147 (316)
T cd05108          82 -TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQH------------  147 (316)
T ss_pred             -CceeeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCc------------
Confidence             577999999 999999998654 35889999999999999999999999999999999999976654            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCCc-----ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS-----YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                     +||+|||++........     ...++..|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       148 ---------------~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~  212 (316)
T cd05108         148 ---------------VKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPY  212 (316)
T ss_pred             ---------------EEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCC
Confidence                           56666666654332111     1234567999999999899999999999999999998 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+....+....+.. ...+|                                                ....++.++.++
T Consensus       213 ~~~~~~~~~~~~~~-~~~~~------------------------------------------------~~~~~~~~~~~l  243 (316)
T cd05108         213 DGIPASEISSILEK-GERLP------------------------------------------------QPPICTIDVYMI  243 (316)
T ss_pred             CCCCHHHHHHHHhC-CCCCC------------------------------------------------CCCCCCHHHHHH
Confidence            87654433221111 00000                                                012335678999


Q ss_pred             HHHhcccCCCCCCCHHHHhcC
Q 013941          399 LQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~h  419 (433)
                      +.+||..||++|||+.+++.+
T Consensus       244 i~~cl~~~p~~Rps~~~l~~~  264 (316)
T cd05108         244 MVKCWMIDADSRPKFRELIIE  264 (316)
T ss_pred             HHHHccCChhhCcCHHHHHHH
Confidence            999999999999999999876

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=1.5e-40  Score=307.82  Aligned_cols=247  Identities=27%  Similarity=0.418  Sum_probs=195.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|++..+++.||||.++..    ......+.+|+.+++.++|+++     +++++++...+.
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~   76 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNV-----IKYLDSFIEDNE   76 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcce-----eeeeeeEEECCe
Confidence            4699999999999999999999999999999987532    2334567789999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          168 ICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .++||||+ +++|.+++...  ....+++..+..++.||+.||.|||++||+|+||||+||+++.++             
T Consensus        77 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~-------------  143 (267)
T cd08228          77 LNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATG-------------  143 (267)
T ss_pred             EEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCC-------------
Confidence            99999999 88999888632  223589999999999999999999999999999999999997655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                    .++|+|||.+.......   ....|+..|+|||.+.+..++.++||||||+++|+|++|..||...
T Consensus       144 --------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~  209 (267)
T cd08228         144 --------------VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             --------------CEEECccccceeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccc
Confidence                          35666666655433211   1246888999999999888999999999999999999999999654


Q ss_pred             Ch--HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          322 EN--LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       322 ~~--~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ..  ......+.. .+ .|.                                              ......+..+.++|
T Consensus       210 ~~~~~~~~~~~~~-~~-~~~----------------------------------------------~~~~~~~~~~~~li  241 (267)
T cd08228         210 KMNLFSLCQKIEQ-CD-YPP----------------------------------------------LPTEHYSEKLRELV  241 (267)
T ss_pred             cccHHHHHHHHhc-CC-CCC----------------------------------------------CChhhcCHHHHHHH
Confidence            32  111111110 00 000                                              00112356899999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q 013941          400 QGLLRYDPAERLKAREALR  418 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||+.+|++|||+.++++
T Consensus       242 ~~cl~~~p~~Rp~~~~vl~  260 (267)
T cd08228         242 SMCIYPDPDQRPDIGYVHQ  260 (267)
T ss_pred             HHHCCCCcccCcCHHHHHH
Confidence            9999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=1.1e-40  Score=313.75  Aligned_cols=247  Identities=22%  Similarity=0.300  Sum_probs=193.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc--EEEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE--LVAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||.||+|.+..++.  .+++|.++..  ....+.+.+|+.++.++ .|+++     +++++++...+
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~i-----v~~~~~~~~~~   76 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNI-----INLLGACENRG   76 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCch-----hheEEEEccCC
Confidence            469999999999999999999877664  4688887632  23345678899999999 57766     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      ..|+||||+ +++|.+++....              ...+++..++.++.||+.||+|||++||+||||||+|||++.++
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~  156 (297)
T cd05089          77 YLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENL  156 (297)
T ss_pred             cceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCC
Confidence            999999999 899999997532              12488899999999999999999999999999999999997655


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcc--cccCCcccchhhhhCCCCCccchHHHHHHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~--~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  309 (433)
                                                 .+||+|||++.........  ...+..|+|||++.+..++.++|||||||++|
T Consensus       157 ---------------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~  209 (297)
T cd05089         157 ---------------------------ASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLW  209 (297)
T ss_pred             ---------------------------eEEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHH
Confidence                                       4566666665432211111  12345799999999888999999999999999


Q ss_pred             HHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          310 ELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       310 el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      ||++ |..||.+....+....+.....                                                 ....
T Consensus       210 el~t~g~~pf~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~  240 (297)
T cd05089         210 EIVSLGGTPYCGMTCAELYEKLPQGYR-------------------------------------------------MEKP  240 (297)
T ss_pred             HHHcCCCCCCCCCCHHHHHHHHhcCCC-------------------------------------------------CCCC
Confidence            9997 9999987665544333221100                                                 0011


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ..++.++.+||.+||+.||.+|||++++++.
T Consensus       241 ~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~  271 (297)
T cd05089         241 RNCDDEVYELMRQCWRDRPYERPPFAQISVQ  271 (297)
T ss_pred             CCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            2346789999999999999999999999654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-43  Score=356.47  Aligned_cols=258  Identities=30%  Similarity=0.427  Sum_probs=210.6

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .++-||+-..+||.|.||.||-|.+..+|+..|+|-++..   .+......+|..++..++|+|+     |+++++-.++
T Consensus      1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNl-----V~YyGVEvHR 1306 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNL-----VRYYGVEVHR 1306 (1509)
T ss_pred             cceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccc-----cccCceeecH
Confidence            4455788899999999999999999999999999977532   2334567789999999999998     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +.++|.|||| +|+|.+++...+  ..++...+.+..|++.||.|||++|||||||||+||+++.+|             
T Consensus      1307 ekv~IFMEyC~~GsLa~ll~~gr--i~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g------------- 1371 (1509)
T KOG4645|consen 1307 EKVYIFMEYCEGGSLASLLEHGR--IEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNG------------- 1371 (1509)
T ss_pred             HHHHHHHHHhccCcHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCC-------------
Confidence            9999999999 999999998764  688889999999999999999999999999999999997766             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC-------cccccCCcccchhhhhCC---CCCccchHHHHHHHHHHHHhC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-------SYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~gt~~y~aPE~~~~~---~~~~~~DiwSlG~il~el~~g  314 (433)
                                    .+|++|||.|.......       ....||+.|||||++.+.   +...++|||||||++.||+||
T Consensus      1372 --------------~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tG 1437 (1509)
T KOG4645|consen 1372 --------------LIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATG 1437 (1509)
T ss_pred             --------------cEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecC
Confidence                          57777888776543322       236899999999999875   356899999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      +.||...++.-++-.-. ..|..|                                               +.+..++.+
T Consensus      1438 krPW~~~dne~aIMy~V-~~gh~P-----------------------------------------------q~P~~ls~~ 1469 (1509)
T KOG4645|consen 1438 KRPWAELDNEWAIMYHV-AAGHKP-----------------------------------------------QIPERLSSE 1469 (1509)
T ss_pred             CCchhhccchhHHHhHH-hccCCC-----------------------------------------------CCchhhhHh
Confidence            99997655432221111 111111                                               112235789


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          395 LIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      .++||..||..||++|+++.|+++|-|-+.+...
T Consensus      1470 g~dFle~Cl~~dP~~Rw~~~qlle~~f~~~~~d~ 1503 (1509)
T KOG4645|consen 1470 GRDFLEHCLEQDPKMRWTASQLLEHAFGKSCTDE 1503 (1509)
T ss_pred             HHHHHHHHHhcCchhhhHHHHHHHhhcccccccc
Confidence            9999999999999999999999999998876443

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=2e-40  Score=304.80  Aligned_cols=249  Identities=31%  Similarity=0.473  Sum_probs=203.2

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC--Ce
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR--NH  167 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~--~~  167 (433)
                      +|++.+.||+|++|.||+|.+..+++.|++|++....   ...+.+.+|+.+++++.|+++     +++++.+...  +.
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~   75 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNI-----VRYYGSERDEEKNT   75 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCE-----eeEEEEEecCCCCe
Confidence            4888999999999999999999899999999987544   345678889999999998777     9999999888  89


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .++|+||+ +++|.+++....  .+++..+..++.|++.||.|||+.|++|+||+|+||+++.++.              
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~--------------  139 (260)
T cd06606          76 LNIFLEYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGV--------------  139 (260)
T ss_pred             EEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCC--------------
Confidence            99999999 999999998765  7999999999999999999999999999999999999976554              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                   ++|+|||.+......     .....++..|+|||.+.+..++.++||||||+++|+|++|..||...
T Consensus       140 -------------~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (260)
T cd06606         140 -------------VKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSEL  206 (260)
T ss_pred             -------------EEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                         566666655443322     22346888999999998888999999999999999999999999776


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      ....  ..+.....                                             ...........+..+.++|.+
T Consensus       207 ~~~~--~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~l~~~i~~  239 (260)
T cd06606         207 GNPM--AALYKIGS---------------------------------------------SGEPPEIPEHLSEEAKDFLRK  239 (260)
T ss_pred             CchH--HHHHhccc---------------------------------------------cCCCcCCCcccCHHHHHHHHH
Confidence            5211  11111100                                             000011122346789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ||+.||++||++.|+++||||
T Consensus       240 ~l~~~p~~Rp~~~~ll~~~~~  260 (260)
T cd06606         240 CLRRDPKKRPTADELLQHPFL  260 (260)
T ss_pred             hCcCChhhCCCHHHHhhCCCC
Confidence            999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1.1e-40  Score=324.39  Aligned_cols=247  Identities=22%  Similarity=0.284  Sum_probs=191.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCC-----CcEEEEEEeccch--hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEK-----KELVAIKIVRSIN--KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~-----~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~  163 (433)
                      ++|++.+.||+|+||.||+|.+...     +..||||+++...  ...+.+.+|+.++.++. |+||     +++++++.
T Consensus        37 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnI-----v~l~~~~~  111 (400)
T cd05105          37 DGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNI-----VNLLGACT  111 (400)
T ss_pred             cceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCe-----eeEEEEEc
Confidence            5689999999999999999986433     3479999996432  33467889999999996 7776     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcC-------------------------------------------------------
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNS-------------------------------------------------------  187 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~-------------------------------------------------------  187 (433)
                      ..+.+||||||| +|+|.+++....                                                       
T Consensus       112 ~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (400)
T cd05105         112 KSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPM  191 (400)
T ss_pred             cCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchh
Confidence            999999999999 999999886531                                                       


Q ss_pred             ---------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEe
Q 013941          188 ---------------------------------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV  228 (433)
Q Consensus       188 ---------------------------------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~  228 (433)
                                                             ...+++..+..++.||+.||+|||++||+||||||+|||++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~  271 (400)
T cd05105         192 LEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLA  271 (400)
T ss_pred             hhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEe
Confidence                                                   12477888899999999999999999999999999999997


Q ss_pred             eCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHH
Q 013941          229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWS  303 (433)
Q Consensus       229 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwS  303 (433)
                      .++                           .+||+|||++......     .....++..|+|||++.+..++.++||||
T Consensus       272 ~~~---------------------------~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwS  324 (400)
T cd05105         272 QGK---------------------------IVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWS  324 (400)
T ss_pred             CCC---------------------------EEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHH
Confidence            655                           3566666666533221     11235677899999999888999999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchh
Q 013941          304 VGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN  382 (433)
Q Consensus       304 lG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (433)
                      |||++|+|++ |..||..................                                              
T Consensus       325 lGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~~----------------------------------------------  358 (400)
T cd05105         325 YGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGYR----------------------------------------------  358 (400)
T ss_pred             HHHHHHHHHHCCCCCCcccchhHHHHHHHhcCCC----------------------------------------------
Confidence            9999999997 99999764332222111110000                                              


Q ss_pred             hhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       383 ~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                        .......+.++.++|.+||+.||++|||+.+|.+
T Consensus       359 --~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~  392 (400)
T cd05105         359 --MAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSD  392 (400)
T ss_pred             --CCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHH
Confidence              0011234668999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.8e-42  Score=323.76  Aligned_cols=279  Identities=25%  Similarity=0.409  Sum_probs=215.3

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      -|..++.||-|+||+|.+++...|...||+|.+++.+-    ....+..|-.||......-+     |+++-.|++.+.+
T Consensus       630 mFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WV-----VrLyySFQDkdnL  704 (1034)
T KOG0608|consen  630 MFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWV-----VRLYYSFQDKDNL  704 (1034)
T ss_pred             ceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcce-----EEEEEEeccCCce
Confidence            48889999999999999999999999999999986442    22345568888888776665     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc--cCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS--RSS  245 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~--~~~  245 (433)
                      |+||+|+ ||++..+|-+.+  .|.|+.++.++..+..|+++.|..|+|||||||+||||+.+|++||+|||++.  ++.
T Consensus       705 YFVMdYIPGGDmMSLLIrmg--IFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWT  782 (1034)
T KOG0608|consen  705 YFVMDYIPGGDMMSLLIRMG--IFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  782 (1034)
T ss_pred             EEEEeccCCccHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccccceec
Confidence            9999999 999999998886  89999999999999999999999999999999999999999999999999975  344


Q ss_pred             CCCCcccCCCCCC------CeeeecCCCCcc-c-------c--CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHH
Q 013941          246 KDGSYFKNLPKSS------AIKLIDFGSTTF-E-------H--QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       246 ~~~~~~~~~~~~~------~~kl~Dfg~a~~-~-------~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  309 (433)
                      -+..++.+-+...      .--.+|-+.+.. .       +  ......+||+.|+|||++....|+..+|+||.|||||
T Consensus       783 HdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~  862 (1034)
T KOG0608|consen  783 HDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILY  862 (1034)
T ss_pred             cccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHH
Confidence            4444444221100      001122221110 0       0  0123469999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccC
Q 013941          310 ELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD  389 (433)
Q Consensus       310 el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (433)
                      ||+.|+.||......+....+..                            |..                  .+......
T Consensus       863 em~~g~~pf~~~tp~~tq~kv~n----------------------------w~~------------------~l~~~~~~  896 (1034)
T KOG0608|consen  863 EMLVGQPPFLADTPGETQYKVIN----------------------------WRN------------------FLHIPYQG  896 (1034)
T ss_pred             HHhhCCCCccCCCCCcceeeeee----------------------------hhh------------------cccccccc
Confidence            99999999987655432222211                            110                  01112234


Q ss_pred             CchHHHHHHHHHhcccCCCCCC---CHHHHhcCCCCCCC
Q 013941          390 HSAGDLIDLLQGLLRYDPAERL---KAREALRHPFFTRD  425 (433)
Q Consensus       390 ~~~~~l~~li~~~L~~dP~~R~---ta~ell~hp~f~~~  425 (433)
                      .++.++.++|.++ ..+++.|+   .++||..||||+..
T Consensus       897 ~ls~e~~~li~kL-c~sad~RLGkng~d~vKaHpfFkgI  934 (1034)
T KOG0608|consen  897 NLSKEALDLIQKL-CCSADSRLGKNGADQVKAHPFFKGI  934 (1034)
T ss_pred             ccCHHHHHHHHHH-hcChhhhhcccchhhhhcCcccccc
Confidence            5688999999984 45789998   48889999999964

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.3e-40  Score=305.04  Aligned_cols=248  Identities=29%  Similarity=0.439  Sum_probs=197.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc------hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI------NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-  164 (433)
                      .+|++.+.||+|+||.||+|++..+++.||+|.+...      ......+.+|+.++++++|+++     +++++++.+ 
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i-----~~~~~~~~~~   76 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRI-----VQYYGCLRDP   76 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCc-----ceEEEEEEcC
Confidence            4699999999999999999999999999999987532      1233567789999999999887     999988765 


Q ss_pred             -CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          165 -RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       165 -~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                       .+.+++||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+|+||||+||+++.++.+         
T Consensus        77 ~~~~~~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~---------  145 (264)
T cd06653          77 EEKKLSIFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNV---------  145 (264)
T ss_pred             CCCEEEEEEEeCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCE---------
Confidence             35789999999 899999998654  58999999999999999999999999999999999999776654         


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccC------CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ------DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                        +|+|||.+.....      ......|+..|+|||++.+..++.++|||||||++|+|++|+.
T Consensus       146 ------------------~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~  207 (264)
T cd06653         146 ------------------KLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKP  207 (264)
T ss_pred             ------------------EECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCC
Confidence                              5555554432211      1122468889999999998889999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||...........+   ......                                             ...+...+..+.
T Consensus       208 p~~~~~~~~~~~~~---~~~~~~---------------------------------------------~~~p~~~~~~~~  239 (264)
T cd06653         208 PWAEYEAMAAIFKI---ATQPTK---------------------------------------------PMLPDGVSDACR  239 (264)
T ss_pred             CCCccCHHHHHHHH---HcCCCC---------------------------------------------CCCCcccCHHHH
Confidence            99765443322221   110000                                             011234567899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      ++|.+||+ +|.+|||+.+++.|||.
T Consensus       240 ~~i~~~l~-~~~~r~~~~~~~~~~~~  264 (264)
T cd06653         240 DFLKQIFV-EEKRRPTAEFLLRHPFV  264 (264)
T ss_pred             HHHHHHhc-CcccCccHHHHhcCCCC
Confidence            99999999 57999999999999995

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-41  Score=321.44  Aligned_cols=210  Identities=25%  Similarity=0.347  Sum_probs=178.5

Q ss_pred             CCceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhh-HHHHHHHHHHHHHHHhCCCCCcceeE
Q 013941           79 DGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY-REAAMIEIDVLQRLARHDIGGTRCVQ  157 (433)
Q Consensus        79 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~~~~i~~~~~v~  157 (433)
                      ...|.+......+++|.-.+.||+|+||.||+|.... +..||||.+...... ..++.+|+.++.+++|+|+     |+
T Consensus        62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~-~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nl-----v~  135 (361)
T KOG1187|consen   62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSD-GTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNL-----VK  135 (361)
T ss_pred             cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECC-CCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCc-----cc
Confidence            3445666666778899999999999999999998644 488999988765543 5569999999999999988     99


Q ss_pred             ecceeccCC-eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cEecCCCCCcEEEeeCCc
Q 013941          158 IRNWFDYRN-HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR---LIHTDLKPENILLVSAEY  232 (433)
Q Consensus       158 ~~~~~~~~~-~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDikp~NIli~~~~~  232 (433)
                      ++|||.+.+ +.+||+||+ +|+|.+++.......++|....+|+.++++||+|||+..   |||||||++|||+++   
T Consensus       136 LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~---  212 (361)
T KOG1187|consen  136 LLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDE---  212 (361)
T ss_pred             EEEEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECC---
Confidence            999999988 599999999 999999998755337899999999999999999999854   999999999999864   


Q ss_pred             ccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-CCcc--c-ccCCcccchhhhhCCCCCccchHHHHHHHH
Q 013941          233 VKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-DHSY--V-VSTRHYRAPEVILGLGWNYPCDLWSVGCIL  308 (433)
Q Consensus       233 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~--~-~gt~~y~aPE~~~~~~~~~~~DiwSlG~il  308 (433)
                                              +..+||+|||+|..... ....  . .||..|+|||++..+..+.++|||||||+|
T Consensus       213 ------------------------~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvl  268 (361)
T KOG1187|consen  213 ------------------------DFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVL  268 (361)
T ss_pred             ------------------------CCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHH
Confidence                                    44678888888865543 2222  2 799999999999988899999999999999


Q ss_pred             HHHHhCCCCCCCC
Q 013941          309 VELCSGEALFQTH  321 (433)
Q Consensus       309 ~el~~g~~pf~~~  321 (433)
                      .||++|+.+....
T Consensus       269 lElitgr~~~d~~  281 (361)
T KOG1187|consen  269 LELITGRKAVDQS  281 (361)
T ss_pred             HHHHhCCcccCCC
Confidence            9999999888653

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-40  Score=307.41  Aligned_cols=246  Identities=23%  Similarity=0.310  Sum_probs=195.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCC---CcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEK---KELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||.||+|.+..+   ...||+|+++..  ......+.+|+.+++.++|+++     +++++++...+
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~   78 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNI-----IRLEGVVTKSR   78 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCc-----ceEeEEEecCC
Confidence            4699999999999999999987644   457999998643  2334567889999999998887     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++||||+ +++|.+++.... ..+++..+..++.|++.||.|||++||+||||||+|||++.++.             
T Consensus        79 ~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~-------------  144 (266)
T cd05033          79 PVMIITEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLV-------------  144 (266)
T ss_pred             ceEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCC-------------
Confidence            999999999 899999997654 36899999999999999999999999999999999999977664             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQ  319 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~  319 (433)
                                    ++|+|||++.......     ....++..|+|||.+.+..++.++||||||+++|+|++ |..||.
T Consensus       145 --------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~  210 (266)
T cd05033         145 --------------CKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYW  210 (266)
T ss_pred             --------------EEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCC
Confidence                          4555555554332111     01234568999999998889999999999999999998 999997


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      .....+....+..... .                                                ......+..+.+|+
T Consensus       211 ~~~~~~~~~~~~~~~~-~------------------------------------------------~~~~~~~~~l~~li  241 (266)
T cd05033         211 DMSNQDVIKAVEDGYR-L------------------------------------------------PPPMDCPSALYQLM  241 (266)
T ss_pred             CCCHHHHHHHHHcCCC-C------------------------------------------------CCCCCCCHHHHHHH
Confidence            6655544333322100 0                                                00123466899999


Q ss_pred             HHhcccCCCCCCCHHHHhcC
Q 013941          400 QGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~h  419 (433)
                      .+||+.+|++||++.|++++
T Consensus       242 ~~cl~~~p~~Rp~~~ei~~~  261 (266)
T cd05033         242 LDCWQKDRNERPTFSQIVST  261 (266)
T ss_pred             HHHcCCCcccCcCHHHHHHH
Confidence            99999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=1.6e-40  Score=314.04  Aligned_cols=254  Identities=26%  Similarity=0.371  Sum_probs=201.7

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ....|...+.||+|+||.||+|++..+++.||+|.+...    ......+.+|+.+++.+.|+++     +++.+++...
T Consensus        13 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~   87 (308)
T cd06634          13 PEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNT-----IQYRGCYLRE   87 (308)
T ss_pred             cHHHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCc-----ccEEEEEEcC
Confidence            345688899999999999999999999999999998632    2233456789999999988887     9999999999


Q ss_pred             CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          166 NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       166 ~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      +..++||||+.++|.+++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.++              
T Consensus        88 ~~~~lv~e~~~~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~--------------  152 (308)
T cd06634          88 HTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPG--------------  152 (308)
T ss_pred             CeeEEEEEccCCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCC--------------
Confidence            9999999999778888776443 3689999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC---CCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG---LGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   .++|+|||++...... ....|+..|+|||++.+   ..++.++|||||||++|+|++|..||...+
T Consensus       153 -------------~~kl~dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  218 (308)
T cd06634         153 -------------LVKLGDFGSASIMAPA-NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  218 (308)
T ss_pred             -------------cEEECCcccceeecCc-ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc
Confidence                         4566666665543322 23468889999999853   457889999999999999999999997654


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      .......+....  .|.                                              ......+..+.+||.+|
T Consensus       219 ~~~~~~~~~~~~--~~~----------------------------------------------~~~~~~~~~~~~li~~c  250 (308)
T cd06634         219 AMSALYHIAQNE--SPA----------------------------------------------LQSGHWSEYFRNFVDSC  250 (308)
T ss_pred             HHHHHHHHhhcC--CCC----------------------------------------------cCcccccHHHHHHHHHH
Confidence            433332222110  000                                              00123456889999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCC
Q 013941          403 LRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |+.+|++|||++++++|||+...
T Consensus       251 l~~~P~~Rp~~~~ll~~~~~~~~  273 (308)
T cd06634         251 LQKIPQDRPTSEVLLKHRFVLRE  273 (308)
T ss_pred             hhCCcccCCCHHHHhhCcccccc
Confidence            99999999999999999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=2.7e-40  Score=311.57  Aligned_cols=247  Identities=23%  Similarity=0.374  Sum_probs=194.2

Q ss_pred             CCeEEeccccccccEEEEEEEe-----cCCCcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~-----~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ++|++.+.||+|+||.||+|.+     ..++..||+|+++...  ...+.+.+|+.+++++ +|+|+     +++++++.
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i-----v~~~~~~~  109 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENI-----VNLLGACT  109 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCc-----ceEEEEEe
Confidence            5799999999999999999975     3345689999987532  3345678899999999 68877     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      ..+..++||||+ +++|.+++.......+++.++..++.||+.||+|||++||+|+||||+|||++.++.          
T Consensus       110 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~----------  179 (302)
T cd05055         110 IGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKI----------  179 (302)
T ss_pred             cCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCe----------
Confidence            999999999999 899999998654445899999999999999999999999999999999999976554          


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEA  316 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~  316 (433)
                                       ++|+|||++.......     ....++..|+|||.+.+..++.++|||||||++|+|++ |..
T Consensus       180 -----------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~  242 (302)
T cd05055         180 -----------------VKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSN  242 (302)
T ss_pred             -----------------EEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCC
Confidence                             5566666554322111     11245678999999998889999999999999999998 999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+..............  .                                              ........+..+.
T Consensus       243 p~~~~~~~~~~~~~~~~~--~----------------------------------------------~~~~~~~~~~~~~  274 (302)
T cd05055         243 PYPGMPVDSKFYKLIKEG--Y----------------------------------------------RMAQPEHAPAEIY  274 (302)
T ss_pred             CcCCCCchHHHHHHHHcC--C----------------------------------------------cCCCCCCCCHHHH
Confidence            997655433222111100  0                                              0001123456899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q 013941          397 DLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +|+.+||..+|++|||+.|+++
T Consensus       275 ~li~~cl~~~p~~Rpt~~ell~  296 (302)
T cd05055         275 DIMKTCWDADPLKRPTFKQIVQ  296 (302)
T ss_pred             HHHHHHcCCCchhCcCHHHHHH
Confidence            9999999999999999999975

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=4.7e-41  Score=309.62  Aligned_cols=245  Identities=22%  Similarity=0.305  Sum_probs=193.0

Q ss_pred             ccccccccEEEEEEEecCCCc-------EEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKE-------LVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~-------~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +.||+|+||.||+|.+...+.       .||+|.+.... ...+.+..|+.+++.+.|+|+     +++++++..++..+
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----v~~~~~~~~~~~~~   75 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHL-----VLNYGVCVCGDESI   75 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCCh-----hheeeEEEeCCCcE
Confidence            479999999999999865543       48888876433 334567789999999888877     99999999989999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||+++.++..++.+++         
T Consensus        76 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~---------  145 (258)
T cd05078          76 MVQEYVKFGSLDTYLKKNK-NLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPP---------  145 (258)
T ss_pred             EEEecCCCCcHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCc---------
Confidence            999999 899999998654 368999999999999999999999999999999999999988766655544         


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCC-CCCCCCChHHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGE-ALFQTHENLEH  326 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~-~pf~~~~~~~~  326 (433)
                                .++++|||.+..... .....++..|+|||++.+. .++.++|||||||++|+|++|. .||...+....
T Consensus       146 ----------~~~l~d~g~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~  214 (258)
T cd05078         146 ----------FIKLSDPGISITVLP-KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKK  214 (258)
T ss_pred             ----------eEEecccccccccCC-chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHH
Confidence                      479999998865433 2335788899999999874 5789999999999999999984 66654433322


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      .... .....                                                  .....+.++.+||.+||+.|
T Consensus       215 ~~~~-~~~~~--------------------------------------------------~~~~~~~~~~~li~~~l~~~  243 (258)
T cd05078         215 LQFY-EDRHQ--------------------------------------------------LPAPKWTELANLINQCMDYE  243 (258)
T ss_pred             HHHH-Hcccc--------------------------------------------------CCCCCcHHHHHHHHHHhccC
Confidence            1111 00000                                                  11123457899999999999


Q ss_pred             CCCCCCHHHHhcC
Q 013941          407 PAERLKAREALRH  419 (433)
Q Consensus       407 P~~R~ta~ell~h  419 (433)
                      |++|||++++++.
T Consensus       244 p~~Rps~~~il~~  256 (258)
T cd05078         244 PDFRPSFRAIIRD  256 (258)
T ss_pred             hhhCCCHHHHHHh
Confidence            9999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-40  Score=303.90  Aligned_cols=239  Identities=31%  Similarity=0.522  Sum_probs=198.6

Q ss_pred             ccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941          100 MGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus       100 lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ||.|+||.||++.+..+++.||+|++.....    ....+..|+.+++++.|+++     +++++.++.++..|+||||+
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~~v~e~~   75 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFI-----VKLHYAFQTEEKLYLVLEYA   75 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcH-----HHHHHHeecCCeeEEEEecC
Confidence            7999999999999988899999999875432    34567889999999998877     99999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                       +++|.+++....  .+++..+..++.||+.||.|||+.+++|+||||+||+++.++                       
T Consensus        76 ~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~-----------------------  130 (250)
T cd05123          76 PGGELFSHLSKEG--RFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADG-----------------------  130 (250)
T ss_pred             CCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCC-----------------------
Confidence             999999998764  689999999999999999999999999999999999997655                       


Q ss_pred             CCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMME  331 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~  331 (433)
                          .++|+|||.+......   .....++..|+|||.+.+...+.++|+||||+++|++++|..||...+.......+.
T Consensus       131 ----~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~  206 (250)
T cd05123         131 ----HIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKIL  206 (250)
T ss_pred             ----cEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence                4677777776554332   233578889999999988888999999999999999999999997766533333222


Q ss_pred             HHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCC
Q 013941          332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL  411 (433)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~  411 (433)
                      ....                                                  ......+..+.++|.+||..||++||
T Consensus       207 ~~~~--------------------------------------------------~~~~~~~~~l~~~i~~~l~~~p~~R~  236 (250)
T cd05123         207 KDPL--------------------------------------------------RFPEFLSPEARDLISGLLQKDPTKRL  236 (250)
T ss_pred             cCCC--------------------------------------------------CCCCCCCHHHHHHHHHHhcCCHhhCC
Confidence            1100                                                  11123366899999999999999999


Q ss_pred             CH---HHHhcCCCC
Q 013941          412 KA---REALRHPFF  422 (433)
Q Consensus       412 ta---~ell~hp~f  422 (433)
                      |+   +++++||||
T Consensus       237 ~~~~~~~l~~~~~f  250 (250)
T cd05123         237 GSGGAEEIKAHPFF  250 (250)
T ss_pred             CcccHHHHHhCCCC
Confidence            99   999999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1.7e-40  Score=311.69  Aligned_cols=247  Identities=21%  Similarity=0.341  Sum_probs=194.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCC-----CcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEK-----KELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~-----~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ++|++.+.||+|+||.||++.....     ...+|+|.+....  .....+.+|+.+++++ .|+++     +++++++.
T Consensus        12 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i-----~~~~~~~~   86 (293)
T cd05053          12 DRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI-----INLLGVCT   86 (293)
T ss_pred             hHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCe-----eeEEEEEc
Confidence            5799999999999999999987643     3689999987532  3335577899999998 67766     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhc--------------CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEe
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKN--------------SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV  228 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~--------------~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~  228 (433)
                      .++.+++||||+ +++|.+++...              ....+++..+..++.||+.||+|||++||+||||||+|||++
T Consensus        87 ~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~  166 (293)
T cd05053          87 QEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVT  166 (293)
T ss_pred             CCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEc
Confidence            999999999999 99999999752              234688999999999999999999999999999999999997


Q ss_pred             eCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHH
Q 013941          229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWS  303 (433)
Q Consensus       229 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwS  303 (433)
                      .++                           .++|+|||.+.......     ....++..|+|||++.+..++.++||||
T Consensus       167 ~~~---------------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  219 (293)
T cd05053         167 EDH---------------------------VMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWS  219 (293)
T ss_pred             CCC---------------------------eEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceee
Confidence            665                           45666666665432211     1123456799999998888999999999


Q ss_pred             HHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchh
Q 013941          304 VGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN  382 (433)
Q Consensus       304 lG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (433)
                      |||++|||++ |..||.+....+....+.....                                               
T Consensus       220 lG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~-----------------------------------------------  252 (293)
T cd05053         220 FGVLLWEIFTLGGSPYPGIPVEELFKLLKEGYR-----------------------------------------------  252 (293)
T ss_pred             hhhHHHHHhcCCCCCCCCCCHHHHHHHHHcCCc-----------------------------------------------
Confidence            9999999997 9999987655443332221100                                               


Q ss_pred             hhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       383 ~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                        .......+..+.+|+.+||..||++|||+.|++++
T Consensus       253 --~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~  287 (293)
T cd05053         253 --MEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVED  287 (293)
T ss_pred             --CCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence              00112345689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=2.6e-40  Score=304.67  Aligned_cols=241  Identities=22%  Similarity=0.361  Sum_probs=196.3

Q ss_pred             ccccccccEEEEEEEecCC---CcEEEEEEeccchhh--HHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEK---KELVAIKIVRSINKY--REAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~--~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|.+...   +..||+|++......  ...+.+|+.++..+.|+++     +++++++.....+++||
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~~~~~lv~   75 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNV-----VRLLGVCTEEEPLYLVL   75 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCCh-----heeeeeecCCCceEEEE
Confidence            4799999999999998866   889999999764432  5678889999999988877     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcC-------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          173 EKL-GPSLYDFLRKNS-------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~-------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ||+ +++|.+++....       ...+++..+..++.||+.||+|||++||+||||||+||+++.++.            
T Consensus        76 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~------------  143 (262)
T cd00192          76 EYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLV------------  143 (262)
T ss_pred             EeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCc------------
Confidence            999 999999998751       247999999999999999999999999999999999999977654            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                     ++|+|||.+......     .....++..|+|||.+.+..++.++|||||||++|+|++ |..||
T Consensus       144 ---------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~  208 (262)
T cd00192         144 ---------------VKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPY  208 (262)
T ss_pred             ---------------EEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCC
Confidence                           566666655443322     222467889999999988889999999999999999999 69999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ......+....+...  .                                               .......++.++.++
T Consensus       209 ~~~~~~~~~~~~~~~--~-----------------------------------------------~~~~~~~~~~~~~~l  239 (262)
T cd00192         209 PGLSNEEVLEYLRKG--Y-----------------------------------------------RLPKPEYCPDELYEL  239 (262)
T ss_pred             CCCCHHHHHHHHHcC--C-----------------------------------------------CCCCCccCChHHHHH
Confidence            887655544433220  0                                               001123346789999


Q ss_pred             HHHhcccCCCCCCCHHHHhcC
Q 013941          399 LQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~h  419 (433)
                      +.+||..||++|||+.|++++
T Consensus       240 i~~~l~~~p~~Rps~~~l~~~  260 (262)
T cd00192         240 MLSCWQLDPEDRPTFSELVER  260 (262)
T ss_pred             HHHHccCCcccCcCHHHHHHh
Confidence            999999999999999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=2.9e-40  Score=309.89  Aligned_cols=246  Identities=22%  Similarity=0.348  Sum_probs=194.8

Q ss_pred             CCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+|.+.+.||+|+||.||+|.+.     .++..+++|.+.... .....+.+|+.+++++.|+++     +++++++...
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~   79 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHI-----VKFYGVCGDG   79 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCc-----ceEEEEEccC
Confidence            35899999999999999999853     345679999986443 234567889999999998887     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSA  230 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~  230 (433)
                      +..++||||+ +++|.+++....              ...+++..++.++.||+.||+|||++||+||||||+|||++.+
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~  159 (291)
T cd05094          80 DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGAN  159 (291)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccC
Confidence            9999999999 999999997643              1348899999999999999999999999999999999999766


Q ss_pred             CcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHH
Q 013941          231 EYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVG  305 (433)
Q Consensus       231 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  305 (433)
                      +.                           ++|+|||++......     .....++..|+|||++.+..++.++||||||
T Consensus       160 ~~---------------------------~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  212 (291)
T cd05094         160 LL---------------------------VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFG  212 (291)
T ss_pred             Cc---------------------------EEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHH
Confidence            64                           555666655432211     1223567889999999998999999999999


Q ss_pred             HHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhh
Q 013941          306 CILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI  384 (433)
Q Consensus       306 ~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (433)
                      |++|+|++ |..||...+.......+...  ..+                                              
T Consensus       213 ~il~el~t~g~~p~~~~~~~~~~~~~~~~--~~~----------------------------------------------  244 (291)
T cd05094         213 VILWEIFTYGKQPWFQLSNTEVIECITQG--RVL----------------------------------------------  244 (291)
T ss_pred             HHHHHHHhCCCCCCCCCCHHHHHHHHhCC--CCC----------------------------------------------
Confidence            99999999 99999776655433322110  000                                              


Q ss_pred             hhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       385 ~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                       ......+..+.+++.+||+.||++|||+.++++
T Consensus       245 -~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~  277 (291)
T cd05094         245 -ERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYK  277 (291)
T ss_pred             -CCCccCCHHHHHHHHHHcccChhhCcCHHHHHH
Confidence             001223568999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=1.7e-40  Score=306.14  Aligned_cols=248  Identities=30%  Similarity=0.494  Sum_probs=197.0

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc------hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI------NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      +|.+.++||+|+||.||++.+..++..+++|+++..      ........+|+.+++.++|+|+     +++++++.+..
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~   75 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAI-----VKFHASFLERD   75 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcH-----HHHHHHHhcCC
Confidence            589999999999999999999888777777776531      1223345678889999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          167 HICIVFEKL-GPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ..++||||+ +++|.+++..  .....+++..++.++.|++.||.|||++|++|+||||+||+++. +            
T Consensus        76 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~------------  142 (260)
T cd08222          76 AFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-N------------  142 (260)
T ss_pred             ceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-C------------
Confidence            999999999 8999998864  22346899999999999999999999999999999999999953 2            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                     .++|+|||.+......   .....|+..|+|||.+.+..++.++|+||||+++|+|++|..||..
T Consensus       143 ---------------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~  207 (260)
T cd08222         143 ---------------LLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEG  207 (260)
T ss_pred             ---------------CEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                           3677777766543221   1234678899999999888889999999999999999999999976


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .........+..  +..|.                                               ....++.++.++|.
T Consensus       208 ~~~~~~~~~~~~--~~~~~-----------------------------------------------~~~~~~~~~~~li~  238 (260)
T cd08222         208 QNFLSVVLRIVE--GPTPS-----------------------------------------------LPETYSRQLNSIMQ  238 (260)
T ss_pred             ccHHHHHHHHHc--CCCCC-----------------------------------------------CcchhcHHHHHHHH
Confidence            554333322211  11110                                               11234568999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      +||..||++||++.|+++||||
T Consensus       239 ~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         239 SMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             HHhcCChhhCcCHHHHhhCCCC
Confidence            9999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=2.9e-40  Score=313.32  Aligned_cols=290  Identities=19%  Similarity=0.217  Sum_probs=198.3

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.+.+|.|  |.||.+++..+++.||||+++..   ......+.+|+.+++.++|+++     +++++++...+..+++|
T Consensus         6 i~~~~~~~--~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i-----~~~~~~~~~~~~~~~~~   78 (314)
T cd08216           6 IGKCFEDL--MIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNI-----LPYVTSFIVDSELYVVS   78 (314)
T ss_pred             hhHhhcCC--ceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcch-----hhhhheeecCCeEEEEE
Confidence            34444444  55666666679999999998754   2344678889999999998887     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++.......+++..++.++.||+.||+|||++||+||||||+||+++.++.++++||+.+......+.. 
T Consensus        79 e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~-  157 (314)
T cd08216          79 PLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKR-  157 (314)
T ss_pred             eccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeecccccc-
Confidence            999 899999998754456899999999999999999999999999999999999998887777777654332211100 


Q ss_pred             cCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC--CCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM  329 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~  329 (433)
                             ...+         ........++..|+|||++.+.  .++.++|||||||++|+|++|..||.......... 
T Consensus       158 -------~~~~---------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~-  220 (314)
T cd08216         158 -------QRVV---------HDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLL-  220 (314)
T ss_pred             -------cccc---------ccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHH-
Confidence                   0000         0111223577889999999763  58899999999999999999999998765443321 


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCC-CCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPD-GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                       ....+..+..+......      .......... ......         .............+.++.+||.+||++||+
T Consensus       221 -~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~li~~~l~~~P~  284 (314)
T cd08216         221 -EKVRGTVPCLLDKSTYP------LYEDSMSQSRSSNEHPN---------NRDSVDHPYTRTFSEHFHQFVELCLQRDPE  284 (314)
T ss_pred             -HHHhccCccccccCchh------hhcCCcCcccccccccc---------hhhhhhcchhhHHHHHHHHHHHHHhhcCCC
Confidence             22222222110000000      0000000000 000000         000000111223467899999999999999


Q ss_pred             CCCCHHHHhcCCCCCCCc
Q 013941          409 ERLKAREALRHPFFTRDV  426 (433)
Q Consensus       409 ~R~ta~ell~hp~f~~~~  426 (433)
                      +|||++|+|+||||++..
T Consensus       285 ~Rpt~~~ll~~p~~~~~~  302 (314)
T cd08216         285 SRPSASQLLNHSFFKQCK  302 (314)
T ss_pred             cCcCHHHHhcCchHhhhc
Confidence            999999999999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.8e-40  Score=307.57  Aligned_cols=247  Identities=21%  Similarity=0.343  Sum_probs=195.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecCC-----CcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEK-----KELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~-----~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      .++|++.+.||+|+||.||+|.+...     +..||+|.+....  .....+.+|+.+++.+.|+++     +++++++.
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~   79 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHV-----VRLLGVVS   79 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCce-----eEEEEEEc
Confidence            35799999999999999999987643     4789999986433  334567789999999988877     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcC--------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNS--------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~--------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~  234 (433)
                      ..+..++||||+ +++|.+++....        ...+++..+..++.||+.||.|||++||+||||||+|||++.++.  
T Consensus        80 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~--  157 (277)
T cd05032          80 TGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLT--  157 (277)
T ss_pred             CCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCC--
Confidence            999999999999 899999997532        124678899999999999999999999999999999999977664  


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHH
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  309 (433)
                                               ++|+|||++......     .....+|..|+|||.+.+..++.++|||||||++|
T Consensus       158 -------------------------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  212 (277)
T cd05032         158 -------------------------VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLW  212 (277)
T ss_pred             -------------------------EEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHH
Confidence                                     555666655432211     12235678899999998888999999999999999


Q ss_pred             HHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          310 ELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       310 el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      |+++ |..||.+.+..+....+..  +..                                               ....
T Consensus       213 el~t~g~~p~~~~~~~~~~~~~~~--~~~-----------------------------------------------~~~~  243 (277)
T cd05032         213 EMATLAEQPYQGLSNEEVLKFVID--GGH-----------------------------------------------LDLP  243 (277)
T ss_pred             HhhccCCCCCccCCHHHHHHHHhc--CCC-----------------------------------------------CCCC
Confidence            9998 9999987665544333321  000                                               0011


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      ...+.++.++|.+||+.+|++|||+.++++
T Consensus       244 ~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  273 (277)
T cd05032         244 ENCPDKLLELMRMCWQYNPKMRPTFLEIVS  273 (277)
T ss_pred             CCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            234668999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=2.8e-40  Score=309.84  Aligned_cols=253  Identities=27%  Similarity=0.452  Sum_probs=197.9

Q ss_pred             CeEEeccccccccEEEEEEEec---CCCcEEEEEEeccch-----hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceec
Q 013941           93 RYRILSKMGEGTFGQVVECFDN---EKKELVAIKIVRSIN-----KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~  163 (433)
                      +|++.+.||+|+||.||+|.+.   .+|+.||+|+++...     ...+.+.+|+.++.++. |+++     +.+++.++
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i-----~~~~~~~~   75 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFL-----VTLHYAFQ   75 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCCh-----hceeeEee
Confidence            4889999999999999999874   478999999987432     23356778999999995 5655     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      .++.+|+||||+ +++|.+++....  .+++..+..++.||+.||.|||++|++||||||+|||++.++           
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~-----------  142 (290)
T cd05613          76 TDTKLHLILDYINGGELFTHLSQRE--RFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNG-----------  142 (290)
T ss_pred             cCCeEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCC-----------
Confidence            999999999999 899999998764  689999999999999999999999999999999999997655           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCC--CCCccchHHHHHHHHHHHHhCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~--~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                      .++|+|||++......    .....|+..|+|||.+.+.  .++.++||||||+++|+|++|..
T Consensus       143 ----------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~  206 (290)
T cd05613         143 ----------------HVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGAS  206 (290)
T ss_pred             ----------------CEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCC
Confidence                            4566666655433221    1124688999999998753  46789999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHH-hcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          317 LFQTHENLEHLAMMERV-LGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      ||...........+... ....+                                               ......+..+
T Consensus       207 p~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~  239 (290)
T cd05613         207 PFTVDGEKNSQAEISRRILKSEP-----------------------------------------------PYPQEMSALA  239 (290)
T ss_pred             CCCcCCccccHHHHHHHhhccCC-----------------------------------------------CCCccCCHHH
Confidence            99643322221111111 00000                                               0112346688


Q ss_pred             HHHHHHhcccCCCCCC-----CHHHHhcCCCCCCCc
Q 013941          396 IDLLQGLLRYDPAERL-----KAREALRHPFFTRDV  426 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~-----ta~ell~hp~f~~~~  426 (433)
                      .+++.+||+.||++|+     +++++++||||+...
T Consensus       240 ~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~  275 (290)
T cd05613         240 KDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKIN  275 (290)
T ss_pred             HHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccccCC
Confidence            9999999999999997     899999999998753

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=5.1e-40  Score=302.00  Aligned_cols=249  Identities=28%  Similarity=0.454  Sum_probs=202.6

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +|++.++||+|+||.||++.+..+++.+|+|.+....   .....+.+|+.+++.++|+++     +++++++......+
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~   75 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNI-----ISYKEAFLDGNKLC   75 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCc-----hhhhhhhccCCEEE
Confidence            5899999999999999999999999999999987532   334566789999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +||||+ +++|.+++....  ...+++..+..++.||+.||.|||+.|++|+||+|+||+++.++               
T Consensus        76 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~---------------  140 (256)
T cd08530          76 IVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVAND---------------  140 (256)
T ss_pred             EEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCC---------------
Confidence            999999 999999987521  24689999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                  .++|+|||++...... .....++..|+|||.+.+..++.++|+||||+++|+|++|+.||...+...
T Consensus       141 ------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~  208 (256)
T cd08530         141 ------------LVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQD  208 (256)
T ss_pred             ------------cEEEeeccchhhhccCCcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                        4667777766543322 122467889999999998889999999999999999999999998766544


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+...  ..+                                               ......+.++.++|.+||+.
T Consensus       209 ~~~~~~~~--~~~-----------------------------------------------~~~~~~~~~~~~li~~~l~~  239 (256)
T cd08530         209 LRYKVQRG--KYP-----------------------------------------------PIPPIYSQDLQNFIRSMLQV  239 (256)
T ss_pred             HHHHHhcC--CCC-----------------------------------------------CCchhhCHHHHHHHHHHcCC
Confidence            33222111  000                                               00113356899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 013941          406 DPAERLKAREALRHPFF  422 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f  422 (433)
                      +|++|||+.++++||++
T Consensus       240 ~p~~Rp~~~~~l~~p~~  256 (256)
T cd08530         240 KPKLRPNCDKILASPAV  256 (256)
T ss_pred             CcccCCCHHHHhcCCCC
Confidence            99999999999999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.3e-40  Score=310.93  Aligned_cols=246  Identities=20%  Similarity=0.266  Sum_probs=194.7

Q ss_pred             CeEEeccccccccEEEEEEEecC-----CCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           93 RYRILSKMGEGTFGQVVECFDNE-----KKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      +|++.++||+|+||.||+|.+..     .++.||+|+++...  ...+.+.+|+.++..+.|+++     +++++++...
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~i-----v~~~~~~~~~   80 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNI-----VCLLGVVTKE   80 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCc-----CeEEEEEcCC
Confidence            58889999999999999998754     35789999987433  234567789999999988877     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSA  230 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~  230 (433)
                      +..++++||+ +++|.+++....              ...+++..+..++.|++.||+|||++||+||||||+|||++.+
T Consensus        81 ~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~  160 (283)
T cd05091          81 QPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDK  160 (283)
T ss_pred             CceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCC
Confidence            9999999999 899999985321              1247888999999999999999999999999999999999765


Q ss_pred             CcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHH
Q 013941          231 EYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVG  305 (433)
Q Consensus       231 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  305 (433)
                      +.                           +||+|||++.......     ....+++.|+|||++.+..++.++||||||
T Consensus       161 ~~---------------------------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG  213 (283)
T cd05091         161 LN---------------------------VKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYG  213 (283)
T ss_pred             Cc---------------------------eEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHH
Confidence            54                           5666666554322111     123457789999999888899999999999


Q ss_pred             HHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhh
Q 013941          306 CILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI  384 (433)
Q Consensus       306 ~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (433)
                      |++|||++ |..||.+....+....+......                                                
T Consensus       214 ~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~------------------------------------------------  245 (283)
T cd05091         214 VVLWEVFSYGLQPYCGYSNQDVIEMIRNRQVL------------------------------------------------  245 (283)
T ss_pred             HHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcC------------------------------------------------
Confidence            99999998 88999877665554444321100                                                


Q ss_pred             hhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       385 ~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                       ......+..+.+|+.+||+.+|++||++.+|++.
T Consensus       246 -~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~  279 (283)
T cd05091         246 -PCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSR  279 (283)
T ss_pred             -CCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHH
Confidence             0113456789999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=6e-40  Score=302.61  Aligned_cols=246  Identities=25%  Similarity=0.376  Sum_probs=195.3

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ..++|++.++||+|+||.||++.+. .+..+|+|.+.......+.+.+|+.+++++.|+++     +++++.+.. ...+
T Consensus         4 ~~~~~~~~~~lg~g~~~~vy~~~~~-~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~-~~~~   76 (260)
T cd05073           4 PRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKL-----VKLHAVVTK-EPIY   76 (260)
T ss_pred             cccceeEEeEecCccceEEEEEEec-CCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCc-----ceEEEEEcC-CCeE
Confidence            3468999999999999999999854 45569999987655556678889999999998887     899888877 7789


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++|||+ +++|.+++.+.....+++..+..++.||+.||.|||+.|++|+||||+||+++.++.                
T Consensus        77 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~----------------  140 (260)
T cd05073          77 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLV----------------  140 (260)
T ss_pred             EEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCc----------------
Confidence            999999 899999998765557889999999999999999999999999999999999976664                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCCh
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHEN  323 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~  323 (433)
                                 ++|+|||.+.......    ....++..|+|||++....++.++|||||||++|++++ |..||.+.+.
T Consensus       141 -----------~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~  209 (260)
T cd05073         141 -----------CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN  209 (260)
T ss_pred             -----------EEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH
Confidence                       5555555544322111    11245567999999988889999999999999999999 9999987655


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+.....                                                 .......+.++.+++.+||
T Consensus       210 ~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~i~~~l  240 (260)
T cd05073         210 PEVIRALERGYR-------------------------------------------------MPRPENCPEELYNIMMRCW  240 (260)
T ss_pred             HHHHHHHhCCCC-------------------------------------------------CCCcccCCHHHHHHHHHHc
Confidence            443332221100                                                 0011234668999999999


Q ss_pred             ccCCCCCCCHHHHhc
Q 013941          404 RYDPAERLKAREALR  418 (433)
Q Consensus       404 ~~dP~~R~ta~ell~  418 (433)
                      +.||++||++.++++
T Consensus       241 ~~~p~~Rp~~~~l~~  255 (260)
T cd05073         241 KNRPEERPTFEYIQS  255 (260)
T ss_pred             ccCcccCcCHHHHHH
Confidence            999999999998863

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-42  Score=321.40  Aligned_cols=251  Identities=27%  Similarity=0.438  Sum_probs=214.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .+++++..||-|+||.|-++........+|+|++++.    .+..+.+..|-.||...+.+.|     |+++..|.++.+
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fI-----vrLYrTfrd~ky  494 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFI-----VRLYRTFRDSKY  494 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHH-----HHHHHHhccchh
Confidence            4577889999999999999987666666899998753    2445667789999999887777     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|++||-| ||.|+..++.++  .|.+.+++.++..+++|++|||++|||+|||||+|+|++.+|+              
T Consensus       495 vYmLmEaClGGElWTiLrdRg--~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy--------------  558 (732)
T KOG0614|consen  495 VYMLMEACLGGELWTILRDRG--SFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGY--------------  558 (732)
T ss_pred             hhhhHHhhcCchhhhhhhhcC--CcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCc--------------
Confidence            99999999 999999999886  8999999999999999999999999999999999999987775              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                   +||.|||+|+......  -+++||+.|.|||++.+...+.++|.||||+++|||++|.+||++.+..
T Consensus       559 -------------~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpm  625 (732)
T KOG0614|consen  559 -------------LKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPM  625 (732)
T ss_pred             -------------eEEeehhhHHHhccCCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchH
Confidence                         5666777776655443  3479999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....|.+.+..                                                ...+..++....+||+++..
T Consensus       626 ktYn~ILkGid~------------------------------------------------i~~Pr~I~k~a~~Lik~LCr  657 (732)
T KOG0614|consen  626 KTYNLILKGIDK------------------------------------------------IEFPRRITKTATDLIKKLCR  657 (732)
T ss_pred             HHHHHHHhhhhh------------------------------------------------hhcccccchhHHHHHHHHHh
Confidence            877777654321                                                11223456688899999999


Q ss_pred             cCCCCCCC-----HHHHhcCCCCCC
Q 013941          405 YDPAERLK-----AREALRHPFFTR  424 (433)
Q Consensus       405 ~dP~~R~t-----a~ell~hp~f~~  424 (433)
                      .+|.+|+.     +.+|.+|.||.+
T Consensus       658 ~~P~ERLG~~~~gI~DIkkH~Wf~g  682 (732)
T KOG0614|consen  658 DNPTERLGYQKGGINDIKKHRWFEG  682 (732)
T ss_pred             cCcHhhhccccCChHHHHhhhhhhc
Confidence            99999985     899999999985

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=3.2e-40  Score=310.29  Aligned_cols=253  Identities=22%  Similarity=0.360  Sum_probs=195.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCC----------------cEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKK----------------ELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~----------------~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      ++|++.+.||+|+||.||+|.+..++                ..||+|++....  ...+.+.+|+.+++++.|+++   
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i---   81 (296)
T cd05051           5 QPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNI---   81 (296)
T ss_pred             hhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCE---
Confidence            57999999999999999999876543                568999987532  345677889999999998877   


Q ss_pred             ceeEecceeccCCeEEEEEccC-CCCHHHHHHhcC---------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCC
Q 013941          154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNS---------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPE  223 (433)
Q Consensus       154 ~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~  223 (433)
                        +++++++..++..++|||++ +++|.+++....         ...+++..++.++.||+.||+|||++||+||||||+
T Consensus        82 --~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~  159 (296)
T cd05051          82 --ARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATR  159 (296)
T ss_pred             --eEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchh
Confidence              99999999999999999999 899999997643         125899999999999999999999999999999999


Q ss_pred             cEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCcc
Q 013941          224 NILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYP  298 (433)
Q Consensus       224 NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~  298 (433)
                      ||+++.++.                           ++|+|||.+......     .....++..|+|||++.+..++.+
T Consensus       160 Nili~~~~~---------------------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  212 (296)
T cd05051         160 NCLVGKNYT---------------------------IKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTK  212 (296)
T ss_pred             ceeecCCCc---------------------------eEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCcc
Confidence            999977654                           555555555432111     112356778999999998889999


Q ss_pred             chHHHHHHHHHHHHh--CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHH
Q 013941          299 CDLWSVGCILVELCS--GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK  376 (433)
Q Consensus       299 ~DiwSlG~il~el~~--g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (433)
                      +|||||||++|||++  |..||......+.+..+.......                   ..                  
T Consensus       213 ~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------------~~------------------  255 (296)
T cd05051         213 SDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDD-------------------GR------------------  255 (296)
T ss_pred             chhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccc-------------------cc------------------
Confidence            999999999999998  778887665554443332211000                   00                  


Q ss_pred             hcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                           ..........+.++.++|.+||+.||++|||+.|+++
T Consensus       256 -----~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~  292 (296)
T cd05051         256 -----QIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHL  292 (296)
T ss_pred             -----cccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHH
Confidence                 0000111234578999999999999999999999964

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=2.9e-40  Score=312.28  Aligned_cols=247  Identities=19%  Similarity=0.316  Sum_probs=192.8

Q ss_pred             CCeEEeccccccccEEEEEEEecC-------CCcEEEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecce
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE-------KKELVAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNW  161 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~  161 (433)
                      ++|.+.+.||+|+||.||+|++..       +...+|+|++...  ......+.+|+.+++.+ .|+++     ++++++
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i-----~~~~~~   92 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNI-----INLLGA   92 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCE-----eeEEEE
Confidence            579999999999999999998643       2357999998753  23345677899999998 57766     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCC--------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEE
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSY--------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENIL  226 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~--------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIl  226 (433)
                      +...+..|+||||+ +++|.+++.....              ..+++..+..++.||+.||+|||++||+||||||+|||
T Consensus        93 ~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil  172 (307)
T cd05098          93 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL  172 (307)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheE
Confidence            99999999999999 8999999976421              24888999999999999999999999999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchH
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDL  301 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di  301 (433)
                      ++.++.                           ++|+|||.+.......     ....++..|+|||++.+..++.++||
T Consensus       173 l~~~~~---------------------------~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  225 (307)
T cd05098         173 VTEDNV---------------------------MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDV  225 (307)
T ss_pred             EcCCCc---------------------------EEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHH
Confidence            976554                           5666666654332111     11134568999999998889999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCc
Q 013941          302 WSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL  380 (433)
Q Consensus       302 wSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (433)
                      |||||++|+|++ |..||.+....+....+.....                                             
T Consensus       226 wslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~---------------------------------------------  260 (307)
T cd05098         226 WSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHR---------------------------------------------  260 (307)
T ss_pred             HHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHcCCC---------------------------------------------
Confidence            999999999998 8899976554433332221100                                             


Q ss_pred             hhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       381 ~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                          .......+.++.+||.+||..+|++|||+.+++++
T Consensus       261 ----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~  295 (307)
T cd05098         261 ----MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  295 (307)
T ss_pred             ----CCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence                00112346689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.7e-40  Score=310.65  Aligned_cols=253  Identities=21%  Similarity=0.328  Sum_probs=194.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCC--------------cEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcce
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKK--------------ELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRC  155 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~--------------~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~  155 (433)
                      ++|++.+.||+|+||.||+|++..++              ..||+|+++..  ......+.+|+++++++.|+++     
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i-----   79 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNI-----   79 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCc-----
Confidence            57999999999999999999875432              35899998753  2334568889999999998887     


Q ss_pred             eEecceeccCCeEEEEEccC-CCCHHHHHHhcCC----------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCc
Q 013941          156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSY----------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPEN  224 (433)
Q Consensus       156 v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~----------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~N  224 (433)
                      +++++++...+..++||||+ +++|.+++.....          ..+++..+..++.||+.||+|||++|++||||||+|
T Consensus        80 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~N  159 (295)
T cd05097          80 IRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRN  159 (295)
T ss_pred             CeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhh
Confidence            99999999999999999999 9999999865321          236888999999999999999999999999999999


Q ss_pred             EEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccc
Q 013941          225 ILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPC  299 (433)
Q Consensus       225 Ili~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~  299 (433)
                      |+++.++.                           +||+|||++.......     ....++..|+|||++.+..++.++
T Consensus       160 ill~~~~~---------------------------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  212 (295)
T cd05097         160 CLVGNHYT---------------------------IKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTAS  212 (295)
T ss_pred             EEEcCCCc---------------------------EEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchh
Confidence            99976554                           5666666554322111     112456789999999988899999


Q ss_pred             hHHHHHHHHHHHHh--CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHh
Q 013941          300 DLWSVGCILVELCS--GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL  377 (433)
Q Consensus       300 DiwSlG~il~el~~--g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (433)
                      |||||||++|+|++  |..||...+..+....+.......                   ..                   
T Consensus       213 DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------------~~-------------------  254 (295)
T cd05097         213 DVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQ-------------------GR-------------------  254 (295)
T ss_pred             hHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhc-------------------cc-------------------
Confidence            99999999999998  678887766555444332211000                   00                   


Q ss_pred             cCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       378 ~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                          ..........+..+.+||.+||+.||++|||+.+|++
T Consensus       255 ----~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~  291 (295)
T cd05097         255 ----QIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHH  291 (295)
T ss_pred             ----cccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                0000112234678999999999999999999999964

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=4.5e-40  Score=302.88  Aligned_cols=237  Identities=25%  Similarity=0.362  Sum_probs=187.0

Q ss_pred             ccccccccEEEEEEEe--cCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFD--NEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~--~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      ++||+|+||.||+|..  ..++..+|+|+++...   ...+.+.+|+.+++.+.|+++     +++++++. .+..++||
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~-~~~~~lv~   74 (257)
T cd05116           1 GELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYI-----VRMIGICE-AESWMLVM   74 (257)
T ss_pred             CcCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCc-----ceEEEEEc-CCCcEEEE
Confidence            3699999999999964  4577899999986432   344667889999999988887     89988875 45679999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..+..++.||+.||+|||++||+||||||+||+++.++.                   
T Consensus        75 e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~-------------------  133 (257)
T cd05116          75 ELAELGPLNKFLQKNK--HVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHY-------------------  133 (257)
T ss_pred             ecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCe-------------------
Confidence            999 889999997654  6899999999999999999999999999999999999976554                   


Q ss_pred             cCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                              ++|+|||++.......      ....++..|+|||.+....++.++|||||||++|||++ |..||......
T Consensus       134 --------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~  205 (257)
T cd05116         134 --------AKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN  205 (257)
T ss_pred             --------EEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence                    5666666654432221      11234578999999988889999999999999999998 99999876655


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+.+...                                                 ...+...+.++.+||.+||+
T Consensus       206 ~~~~~i~~~~~-------------------------------------------------~~~~~~~~~~l~~li~~~~~  236 (257)
T cd05116         206 EVTQMIESGER-------------------------------------------------MECPQRCPPEMYDLMKLCWT  236 (257)
T ss_pred             HHHHHHHCCCC-------------------------------------------------CCCCCCCCHHHHHHHHHHhc
Confidence            54443332100                                                 00112356789999999999


Q ss_pred             cCCCCCCCHHHHhc
Q 013941          405 YDPAERLKAREALR  418 (433)
Q Consensus       405 ~dP~~R~ta~ell~  418 (433)
                      .||++||++.+|.+
T Consensus       237 ~~p~~Rp~~~~i~~  250 (257)
T cd05116         237 YGVDERPGFAVVEL  250 (257)
T ss_pred             cCchhCcCHHHHHH
Confidence            99999999998864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=4.8e-40  Score=306.47  Aligned_cols=244  Identities=22%  Similarity=0.296  Sum_probs=191.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc----EEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE----LVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+|+++++||+|+||+||+|++..+++    .||+|+++..  ......+.+|+.++..+.|+++     +.+++++.. 
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~-   80 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYV-----CRLLGICLT-   80 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCC-----ceEEEEEcC-
Confidence            569999999999999999999877766    4899998643  2334567789999998888877     888888765 


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ...+++|||+ +|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++             
T Consensus        81 ~~~~l~~~~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~-------------  146 (279)
T cd05109          81 STVQLVTQLMPYGCLLDYVRENK-DRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPN-------------  146 (279)
T ss_pred             CCcEEEEEcCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCC-------------
Confidence            4578999999 999999997643 3689999999999999999999999999999999999997655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCCc-----ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS-----YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                    .+||+|||++........     ...++..|+|||.+.+..++.++|||||||++|||++ |..||
T Consensus       147 --------------~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~  212 (279)
T cd05109         147 --------------HVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPY  212 (279)
T ss_pred             --------------cEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCC
Confidence                          456666666654332111     1234568999999998889999999999999999998 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ...........+.... ..+                                                .....+.++.++
T Consensus       213 ~~~~~~~~~~~~~~~~-~~~------------------------------------------------~~~~~~~~~~~l  243 (279)
T cd05109         213 DGIPAREIPDLLEKGE-RLP------------------------------------------------QPPICTIDVYMI  243 (279)
T ss_pred             CCCCHHHHHHHHHCCC-cCC------------------------------------------------CCccCCHHHHHH
Confidence            7655443332222110 000                                                012346688999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q 013941          399 LQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~  418 (433)
                      |.+||..||++|||+.++++
T Consensus       244 i~~~l~~dp~~Rp~~~~l~~  263 (279)
T cd05109         244 MVKCWMIDSECRPRFRELVD  263 (279)
T ss_pred             HHHHcCCChhhCcCHHHHHH
Confidence            99999999999999999984

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=3.8e-40  Score=305.06  Aligned_cols=247  Identities=28%  Similarity=0.422  Sum_probs=195.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|++..+++.||||.+...    ......+.+|+.+++.+.|+|+     +++++++..++.
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----~~~~~~~~~~~~   76 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNV-----IKYYASFIEDNE   76 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCch-----hhhhheeEeCCe
Confidence            3689999999999999999999999999999987642    2234567789999999988887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          168 ICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .++||||+ +++|.+++...  ....+++..++.++.||+.||.|||++||+|+||||+||+++.++.            
T Consensus        77 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~------------  144 (267)
T cd08229          77 LNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGV------------  144 (267)
T ss_pred             EEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCC------------
Confidence            99999999 89999988642  2246899999999999999999999999999999999999976654            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                     ++|+|||++.......   ....|+..|+|||.+.+..++.++||||||+++|+|++|..||.+.
T Consensus       145 ---------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  209 (267)
T cd08229         145 ---------------VKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             ---------------EEECcchhhhccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccc
Confidence                           5666666554332211   2246888999999998888999999999999999999999999654


Q ss_pred             ChH--HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          322 ENL--EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       322 ~~~--~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ...  .....+...                          .++.                      ......+..+.++|
T Consensus       210 ~~~~~~~~~~~~~~--------------------------~~~~----------------------~~~~~~~~~~~~li  241 (267)
T cd08229         210 KMNLYSLCKKIEQC--------------------------DYPP----------------------LPSDHYSEELRQLV  241 (267)
T ss_pred             cchHHHHhhhhhcC--------------------------CCCC----------------------CCcccccHHHHHHH
Confidence            321  111111100                          0000                      00123466899999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q 013941          400 QGLLRYDPAERLKAREALR  418 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||+.||++|||+.+|++
T Consensus       242 ~~~l~~~p~~Rpt~~~i~~  260 (267)
T cd08229         242 NMCINPDPEKRPDITYVYD  260 (267)
T ss_pred             HHhcCCCcccCCCHHHHHH
Confidence            9999999999999997764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=3.8e-40  Score=309.81  Aligned_cols=256  Identities=26%  Similarity=0.426  Sum_probs=196.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +.|++.+.||+|+||.||+|.+..+++.||||+++...  ........|+.++.+.. |+++     +++++++..+...
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i-----~~~~~~~~~~~~~   89 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYI-----VKCYGYFITDSDV   89 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCch-----HhhheeeecCCeE
Confidence            56999999999999999999999889999999987532  23344556776666554 5555     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||++++|.+++.... ..+++..+..++.||+.||+|||+ .||+||||+|+||+++.++                
T Consensus        90 ~~v~e~~~~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~----------------  152 (296)
T cd06618          90 FICMELMSTCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASG----------------  152 (296)
T ss_pred             EEEeeccCcCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCC----------------
Confidence            9999999888888876643 378999999999999999999997 5999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCC----CCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~----~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                 .++|+|||++......  .....++..|+|||.+.+..    ++.++||||||+++|+|++|+.||...
T Consensus       153 -----------~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  221 (296)
T cd06618         153 -----------NVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNC  221 (296)
T ss_pred             -----------CEEECccccchhccCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcc
Confidence                       4666666666543221  12235778899999987653    789999999999999999999999653


Q ss_pred             Ch-HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          322 EN-LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       322 ~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .. .+.+.   ........                    .++                        ....++.++.+||.
T Consensus       222 ~~~~~~~~---~~~~~~~~--------------------~~~------------------------~~~~~~~~l~~li~  254 (296)
T cd06618         222 KTEFEVLT---KILQEEPP--------------------SLP------------------------PNEGFSPDFCSFVD  254 (296)
T ss_pred             hhHHHHHH---HHhcCCCC--------------------CCC------------------------CCCCCCHHHHHHHH
Confidence            22 11111   11110000                    000                        01124668999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      +||..||++|||++++++||||.....
T Consensus       255 ~~l~~~p~~Rp~~~~il~~~~~~~~~~  281 (296)
T cd06618         255 LCLTKDHRKRPKYRELLQHPFIRRYET  281 (296)
T ss_pred             HHccCChhhCCCHHHHhcChhhhccch
Confidence            999999999999999999999998644

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-41  Score=295.78  Aligned_cols=286  Identities=28%  Similarity=0.480  Sum_probs=230.0

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC--
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR--  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~--  165 (433)
                      ..||.-++.+|.|.- .|..|.|.-.++.||+|.+...   ........+|...+..+.|.|+     ++++.+|.-.  
T Consensus        16 ~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~ni-----i~l~n~ftP~~~   89 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNI-----ISLLNVFTPQKT   89 (369)
T ss_pred             eeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccce-----eeeeeccCcccc
Confidence            468999999999998 8888999999999999987532   2334567789999999999888     9999988643  


Q ss_pred             ----CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          166 ----NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       166 ----~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                          ..+|+|||+|..+|.+.+..    .++-..+..++.|++.|++|||+.||+||||||+||++..++          
T Consensus        90 l~~~~e~y~v~e~m~~nl~~vi~~----elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~----------  155 (369)
T KOG0665|consen   90 LEEFQEVYLVMELMDANLCQVILM----ELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDC----------  155 (369)
T ss_pred             HHHHHhHHHHHHhhhhHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchh----------
Confidence                46899999999999999883    478899999999999999999999999999999999997655          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                       .+||.|||+|......  .+..+.|..|+|||++.+..|...+||||+||++.||++|...|.
T Consensus       156 -----------------~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~  218 (369)
T KOG0665|consen  156 -----------------TLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFP  218 (369)
T ss_pred             -----------------heeeccchhhcccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEec
Confidence                             4677777777654433  344688999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcC--chhhhhhccCCchHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR--LPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~  397 (433)
                      +.+..++..++.+.+|.+.+.+..+.......|...-.  .+..        ..+.+...  ......+.....+..+++
T Consensus       219 g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~--~y~~--------~~f~~~fpD~~f~~~~e~~~~~~~~ard  288 (369)
T KOG0665|consen  219 GKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRP--QYQA--------ISFSELFPDSLFPVVLEGSKLDCSLARD  288 (369)
T ss_pred             CchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcCh--Hhhc--------cchhhhCCcccccccccCCccchHHHHH
Confidence            99999999999999999999888887666666654210  0000        00000000  111112222344668999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      ++.+||..||++|.+++++|.||||+
T Consensus       289 ll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  289 LLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             HHHHhhccChhhcccHHHHhcCCeee
Confidence            99999999999999999999999997

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=5.3e-40  Score=306.37  Aligned_cols=246  Identities=21%  Similarity=0.346  Sum_probs=194.4

Q ss_pred             CCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+|++.++||+|+||.||++...     .++..+|+|.+.... .....+.+|+++++.+.|+++     +++++++...
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~   79 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHI-----VRFYGVCTEG   79 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCC-----ceEEEEEecC
Confidence            46889999999999999999742     356689999886433 345678889999999998887     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCC-------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSY-------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~-------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      +..++||||+ +++|.+++.....             ..+++..+..++.||+.||+|||++||+||||||+|||+++++
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~  159 (280)
T cd05092          80 RPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGL  159 (280)
T ss_pred             CceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCC
Confidence            9999999999 9999999976431             2488999999999999999999999999999999999997665


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGC  306 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~  306 (433)
                      .                           ++|+|||++......     .....++..|+|||++.+..++.++|||||||
T Consensus       160 ~---------------------------~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  212 (280)
T cd05092         160 V---------------------------VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGV  212 (280)
T ss_pred             C---------------------------EEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHH
Confidence            4                           555566655432211     11224567899999999989999999999999


Q ss_pred             HHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          307 ILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       307 il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      ++|+|++ |.+||......+....+.....                                                 .
T Consensus       213 il~el~~~g~~p~~~~~~~~~~~~~~~~~~-------------------------------------------------~  243 (280)
T cd05092         213 VLWEIFTYGKQPWYQLSNTEAIECITQGRE-------------------------------------------------L  243 (280)
T ss_pred             HHHHHHcCCCCCCccCCHHHHHHHHHcCcc-------------------------------------------------C
Confidence            9999998 9999976655444333221100                                                 0


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .....++..+.+||.+||+.||++||++.+|++
T Consensus       244 ~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~  276 (280)
T cd05092         244 ERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHS  276 (280)
T ss_pred             CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            011234678999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=1.7e-40  Score=306.03  Aligned_cols=243  Identities=27%  Similarity=0.427  Sum_probs=190.3

Q ss_pred             EEeccccccccEEEEEEEec----CCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           95 RILSKMGEGTFGQVVECFDN----EKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++.+.||.|.||.||+|...    ..+..|+||+++..  ....+.+.+|++++.+++|+|+     +++++++...+..
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-----~~~~g~~~~~~~~   76 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNI-----VKLYGFCIENEPL   76 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTB-----E-EEEEEESSSSE
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccc-----ccccccccccccc
Confidence            46789999999999999987    45678999999643  2346788899999999999888     9999999988889


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||+ +++|.+++.......+++..+..++.||+.||.|||+++|+|+||+++|||++.++.               
T Consensus        77 ~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~---------------  141 (259)
T PF07714_consen   77 FLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQ---------------  141 (259)
T ss_dssp             EEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTE---------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------------
Confidence            9999999 899999999874457999999999999999999999999999999999999987665               


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTH  321 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~  321 (433)
                                  +||+|||++......     .....+...|+|||.+.+..++.++||||||+++|||++ |+.||...
T Consensus       142 ------------~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~  209 (259)
T PF07714_consen  142 ------------VKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY  209 (259)
T ss_dssp             ------------EEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS
T ss_pred             ------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                        555555555443111     111345678999999998889999999999999999999 78999887


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +..+....+.+...                                                 ......++..+.++|.+
T Consensus       210 ~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~li~~  240 (259)
T PF07714_consen  210 DNEEIIEKLKQGQR-------------------------------------------------LPIPDNCPKDIYSLIQQ  240 (259)
T ss_dssp             CHHHHHHHHHTTEE-------------------------------------------------TTSBTTSBHHHHHHHHH
T ss_pred             cccccccccccccc-------------------------------------------------ceeccchhHHHHHHHHH
Confidence            66665554422110                                                 11123457789999999


Q ss_pred             hcccCCCCCCCHHHHhc
Q 013941          402 LLRYDPAERLKAREALR  418 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~  418 (433)
                      ||..||++|||++++++
T Consensus       241 C~~~~p~~RPs~~~i~~  257 (259)
T PF07714_consen  241 CWSHDPEKRPSFQEILQ  257 (259)
T ss_dssp             HT-SSGGGS--HHHHHH
T ss_pred             HcCCChhhCcCHHHHHh
Confidence            99999999999999974

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=5.6e-40  Score=304.75  Aligned_cols=244  Identities=17%  Similarity=0.248  Sum_probs=187.8

Q ss_pred             EEeccccccccEEEEEEEecCCCc--EEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-----
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKE--LVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-----  164 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-----  164 (433)
                      .+.+.||+|+||.||+|++..++.  .||+|.++..   ....+.+.+|+.+++.++|+++     +++++++..     
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~   76 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNV-----MRLIGVCLQTVESE   76 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCc-----ceEEEEEccCCccc
Confidence            467899999999999999877765  6899988643   3345667889999999998887     888876532     


Q ss_pred             -CCeEEEEEccC-CCCHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          165 -RNHICIVFEKL-GPSLYDFLRKN----SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       165 -~~~~~lv~e~~-~~~L~~~l~~~----~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                       ....++||||+ +++|.+++...    ....+++..+..++.||+.||+|||++||+||||||+|||++.++.      
T Consensus        77 ~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~------  150 (272)
T cd05075          77 GYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMN------  150 (272)
T ss_pred             CCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCC------
Confidence             23579999999 89999887532    1235889999999999999999999999999999999999976554      


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  313 (433)
                                           ++|+|||++.......     ....++..|+|||.+.+..++.++|||||||++|+|++
T Consensus       151 ---------------------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~  209 (272)
T cd05075         151 ---------------------VCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIAT  209 (272)
T ss_pred             ---------------------EEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHc
Confidence                                 5666666555432211     11245678999999998889999999999999999999


Q ss_pred             -CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          314 -GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       314 -g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                       |..||.+.........+....  .                                               .......+
T Consensus       210 ~g~~p~~~~~~~~~~~~~~~~~--~-----------------------------------------------~~~~~~~~  240 (272)
T cd05075         210 RGQTPYPGVENSEIYDYLRQGN--R-----------------------------------------------LKQPPDCL  240 (272)
T ss_pred             CCCCCCCCCCHHHHHHHHHcCC--C-----------------------------------------------CCCCCCCC
Confidence             899998765544333222110  0                                               00112345


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ..+.++|.+||+.||++|||+.+++++
T Consensus       241 ~~~~~li~~~l~~~p~~Rps~~~l~~~  267 (272)
T cd05075         241 DGLYSLMSSCWLLNPKDRPSFETLRCE  267 (272)
T ss_pred             HHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.5e-39  Score=300.93  Aligned_cols=247  Identities=27%  Similarity=0.432  Sum_probs=195.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.++..    ......+.+|+++++++.|+++     +++++.+...+.
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i-----~~~~~~~~~~~~   76 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNV-----IKYLASFIENNE   76 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCe-----eeeeeeeecCCe
Confidence            4799999999999999999999989999999988632    2235677889999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          168 ICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .++||||+ +++|.+++...  ....+++..+..++.||+.||.|||+.||+||||||+||+++.++.            
T Consensus        77 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~------------  144 (267)
T cd08224          77 LNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGV------------  144 (267)
T ss_pred             EEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCc------------
Confidence            99999999 89999998642  2245899999999999999999999999999999999999976664            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                     ++|+|||.+......   .....|+..|+|||.+.+..++.++|||||||++|+|++|..||...
T Consensus       145 ---------------~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  209 (267)
T cd08224         145 ---------------VKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             ---------------EEEeccceeeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccC
Confidence                           566666655432221   12246788999999999888999999999999999999999999654


Q ss_pred             ChH--HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          322 ENL--EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       322 ~~~--~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ...  .....+..  +..+.                                              ......+..+.++|
T Consensus       210 ~~~~~~~~~~~~~--~~~~~----------------------------------------------~~~~~~~~~~~~~i  241 (267)
T cd08224         210 KMNLYSLCKKIEK--CDYPP----------------------------------------------LPADHYSEELRDLV  241 (267)
T ss_pred             CccHHHHHhhhhc--CCCCC----------------------------------------------CChhhcCHHHHHHH
Confidence            311  11111100  00000                                              00113456899999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q 013941          400 QGLLRYDPAERLKAREALR  418 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||..+|++|||+.+|++
T Consensus       242 ~~cl~~~p~~Rp~~~~il~  260 (267)
T cd08224         242 SRCINPDPEKRPDISYVLQ  260 (267)
T ss_pred             HHHcCCCcccCCCHHHHHH
Confidence            9999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=7.2e-40  Score=301.27  Aligned_cols=244  Identities=25%  Similarity=0.381  Sum_probs=195.1

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      .|++.+.||+|+||.||+|.+. +++.+|+|++.........+.+|+++++++.|+++     +++++++......++||
T Consensus         5 ~~~~~~~ig~g~~g~v~~~~~~-~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~~v~   78 (256)
T cd05112           5 ELTLVQEIGSGQFGLVWLGYWL-EKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKL-----VQLYGVCTERSPICLVF   78 (256)
T ss_pred             HeEEEeeecCcccceEEEEEEe-CCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCe-----eeEEEEEccCCceEEEE
Confidence            5899999999999999999875 46679999987655555678889999999988877     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++.... ..++++.++.++.|++.||+|||++|++||||||+||+++.++.                   
T Consensus        79 e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~-------------------  138 (256)
T cd05112          79 EFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQV-------------------  138 (256)
T ss_pred             EcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCe-------------------
Confidence            999 899999987643 35889999999999999999999999999999999999976554                   


Q ss_pred             cCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEH  326 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~  326 (433)
                              ++|+|||.+.......    ....++..|+|||++.+..++.++|||||||++|+|++ |..||........
T Consensus       139 --------~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~  210 (256)
T cd05112         139 --------VKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNSEV  210 (256)
T ss_pred             --------EEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHHHH
Confidence                    5566666554322111    11234568999999998889999999999999999998 9999987665544


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+......                                                 ......+..+.+|+.+||+.+
T Consensus       211 ~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~l~~~~l~~~  241 (256)
T cd05112         211 VETINAGFRL-------------------------------------------------YKPRLASQSVYELMQHCWKER  241 (256)
T ss_pred             HHHHhCCCCC-------------------------------------------------CCCCCCCHHHHHHHHHHcccC
Confidence            4333211000                                                 001123568999999999999


Q ss_pred             CCCCCCHHHHhcC
Q 013941          407 PAERLKAREALRH  419 (433)
Q Consensus       407 P~~R~ta~ell~h  419 (433)
                      |++|||+.+++++
T Consensus       242 p~~Rp~~~~~l~~  254 (256)
T cd05112         242 PEDRPSFSLLLHQ  254 (256)
T ss_pred             hhhCCCHHHHHHh
Confidence            9999999999863

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=9.4e-40  Score=300.73  Aligned_cols=237  Identities=24%  Similarity=0.348  Sum_probs=186.8

Q ss_pred             ccccccccEEEEEEEecCCC---cEEEEEEeccchh--hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKK---ELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~---~~vavK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      ++||+|+||.||+|.+..++   ..||+|.+.....  ..+.+.+|+.+++.+.|+++     +++++++. .+..++||
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~-~~~~~~v~   74 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCI-----VRLIGVCK-GEPLMLVM   74 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCe-----eeEEEEEc-CCceEEEE
Confidence            47999999999999876554   7899999875443  45677889999999988777     99998776 45689999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++....  .+++..+..++.|++.||+|||++||+|+||||+|||++.++.+                  
T Consensus        75 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~------------------  134 (257)
T cd05060          75 ELAPLGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQA------------------  134 (257)
T ss_pred             EeCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcE------------------
Confidence            999 899999998765  78999999999999999999999999999999999999876654                  


Q ss_pred             cCCCCCCCeeeecCCCCccccCCCc------ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQDHS------YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                               +|+|||.+........      ...++..|+|||.+.+..++.++|||||||++|+|++ |..||...+..
T Consensus       135 ---------kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~  205 (257)
T cd05060         135 ---------KISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGA  205 (257)
T ss_pred             ---------EeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHH
Confidence                     5555555443222111      1123467999999998889999999999999999998 99999776554


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+.... .                                                ......++..+.++|.+||.
T Consensus       206 ~~~~~~~~~~-~------------------------------------------------~~~~~~~~~~l~~li~~cl~  236 (257)
T cd05060         206 EVIAMLESGE-R------------------------------------------------LPRPEECPQEIYSIMLSCWK  236 (257)
T ss_pred             HHHHHHHcCC-c------------------------------------------------CCCCCCCCHHHHHHHHHHhc
Confidence            4333322110 0                                                01123346789999999999


Q ss_pred             cCCCCCCCHHHHhc
Q 013941          405 YDPAERLKAREALR  418 (433)
Q Consensus       405 ~dP~~R~ta~ell~  418 (433)
                      .||++|||+.++++
T Consensus       237 ~~p~~Rp~~~~l~~  250 (257)
T cd05060         237 YRPEDRPTFSELES  250 (257)
T ss_pred             CChhhCcCHHHHHH
Confidence            99999999999874

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=4.8e-40  Score=302.15  Aligned_cols=242  Identities=21%  Similarity=0.316  Sum_probs=193.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.+.||+|+||.||++.  .+++.||+|+++... ..+.+.+|+.++++++|+++     +++++++... ..++|
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~--~~~~~~~iK~~~~~~-~~~~~~~e~~~l~~~~~~~i-----~~~~~~~~~~-~~~~v   76 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGE--YTGQKVAVKNIKCDV-TAQAFLEETAVMTKLHHKNL-----VRLLGVILHN-GLYIV   76 (254)
T ss_pred             HHceeeeeeccCCCCceEecc--cCCCceEEEeecCcc-hHHHHHHHHHHHHhCCCCCc-----CeEEEEEcCC-CcEEE
Confidence            469999999999999999986  467889999986532 34567889999999988887     9999888654 47999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.......+++..+..++.|++.||.|||++|++||||||+||+++.++                   
T Consensus        77 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~-------------------  137 (254)
T cd05083          77 MELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDG-------------------  137 (254)
T ss_pred             EECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCC-------------------
Confidence            9999 89999999876555689999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAM  329 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~  329 (433)
                              .++|+|||++............+..|+|||.+.+..++.++|||||||++|+|++ |..||...+..+....
T Consensus       138 --------~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~  209 (254)
T cd05083         138 --------VAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKEC  209 (254)
T ss_pred             --------cEEECCCccceeccccCCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHH
Confidence                    4666777766543332223344567999999988889999999999999999998 9999987665443332


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAE  409 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  409 (433)
                      +.+...                                                 ......++..+.+++.+||+.+|++
T Consensus       210 ~~~~~~-------------------------------------------------~~~~~~~~~~~~~li~~~l~~~p~~  240 (254)
T cd05083         210 VEKGYR-------------------------------------------------MEPPEGCPADVYVLMTSCWETEPKK  240 (254)
T ss_pred             HhCCCC-------------------------------------------------CCCCCcCCHHHHHHHHHHcCCChhh
Confidence            221100                                                 0011234678999999999999999


Q ss_pred             CCCHHHHhc
Q 013941          410 RLKAREALR  418 (433)
Q Consensus       410 R~ta~ell~  418 (433)
                      ||+++++++
T Consensus       241 Rp~~~~l~~  249 (254)
T cd05083         241 RPSFHKLRE  249 (254)
T ss_pred             CcCHHHHHH
Confidence            999999975

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1e-39  Score=309.48  Aligned_cols=246  Identities=20%  Similarity=0.325  Sum_probs=192.6

Q ss_pred             CCeEEeccccccccEEEEEEEecC-------CCcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEecce
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE-------KKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNW  161 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~  161 (433)
                      ++|.+.++||+|+||.||+|++..       ....||+|+++...  .....+..|+.+++.+ .|+++     ++++++
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i-----v~~~~~   86 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNI-----INLLGV   86 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCe-----eeEEEE
Confidence            579999999999999999998632       34579999987432  3345677899999988 47766     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEE
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENIL  226 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIl  226 (433)
                      +...+.+|+||||+ +++|.+++....              ...+++..+..++.||+.||.|||++||+||||||+|||
T Consensus        87 ~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil  166 (314)
T cd05099          87 CTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVL  166 (314)
T ss_pred             EccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEE
Confidence            99999999999999 899999997642              135888999999999999999999999999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchH
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDL  301 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di  301 (433)
                      ++.++                           .+||+|||.+.......     ....++..|+|||++.+..++.++||
T Consensus       167 l~~~~---------------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  219 (314)
T cd05099         167 VTEDN---------------------------VMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDV  219 (314)
T ss_pred             EcCCC---------------------------cEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchh
Confidence            97655                           45666666665432211     11133467999999998889999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCc
Q 013941          302 WSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL  380 (433)
Q Consensus       302 wSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (433)
                      |||||++|+|++ |..||.+....+....+.....                                             
T Consensus       220 wslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~---------------------------------------------  254 (314)
T cd05099         220 WSFGILMWEIFTLGGSPYPGIPVEELFKLLREGHR---------------------------------------------  254 (314)
T ss_pred             hHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC---------------------------------------------
Confidence            999999999999 8999977655444433321100                                             


Q ss_pred             hhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       381 ~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                          ......++.++.++|.+||..||++|||+.|+++
T Consensus       255 ----~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~  288 (314)
T cd05099         255 ----MDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVE  288 (314)
T ss_pred             ----CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                0011234568999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=9.2e-40  Score=302.68  Aligned_cols=245  Identities=22%  Similarity=0.323  Sum_probs=194.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc---EEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE---LVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~---~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|+..+.||+|+||.||+|.+..+++   .+|+|.+...  ....+.+..|+.++..+.|+++     +++.+++...+
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~   79 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNI-----IRLEGVVTKFK   79 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCe-----eEEEEEEccCC
Confidence            468999999999999999999876654   7999998653  2344667889999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+.||+||||||+||+++.++.             
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~-------------  145 (268)
T cd05063          80 PAMIITEYMENGALDKYLRDHD-GEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLE-------------  145 (268)
T ss_pred             CcEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCc-------------
Confidence            999999999 889999997643 46899999999999999999999999999999999999976654             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCCc------ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS------YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                    ++|+|||++........      ....+..|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       146 --------------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~  211 (268)
T cd05063         146 --------------CKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPY  211 (268)
T ss_pred             --------------EEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCC
Confidence                          55556665543321111      0122457999999998889999999999999999997 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ...+..+....+.... ..|                                                .....+.++.++
T Consensus       212 ~~~~~~~~~~~i~~~~-~~~------------------------------------------------~~~~~~~~~~~l  242 (268)
T cd05063         212 WDMSNHEVMKAINDGF-RLP------------------------------------------------APMDCPSAVYQL  242 (268)
T ss_pred             CcCCHHHHHHHHhcCC-CCC------------------------------------------------CCCCCCHHHHHH
Confidence            8766555444443211 100                                                012345688999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q 013941          399 LQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~  418 (433)
                      +.+||+.||++||++.+|++
T Consensus       243 i~~c~~~~p~~Rp~~~~i~~  262 (268)
T cd05063         243 MLQCWQQDRARRPRFVDIVN  262 (268)
T ss_pred             HHHHcCCCcccCcCHHHHHH
Confidence            99999999999999999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.7e-40  Score=304.24  Aligned_cols=245  Identities=17%  Similarity=0.248  Sum_probs=189.4

Q ss_pred             eEEeccccccccEEEEEEEecCC---CcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC-
Q 013941           94 YRILSKMGEGTFGQVVECFDNEK---KELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN-  166 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~-  166 (433)
                      |++.+.||+|+||.||+|....+   +..||+|+++...   .....+.+|+.+++.+.|+++     +++++++.... 
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~   75 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNV-----MKLIGVCFEASS   75 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCe-----eeEEeeeccCCc
Confidence            56789999999999999987653   4789999987432   234567889999999988877     99988775544 


Q ss_pred             -----eEEEEEccC-CCCHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          167 -----HICIVFEKL-GPSLYDFLRKN----SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       167 -----~~~lv~e~~-~~~L~~~l~~~----~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                           ..++||||+ +++|..++...    ....+++..+..++.||+.||.|||++||+||||||+||++++++.    
T Consensus        76 ~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~----  151 (273)
T cd05035          76 LQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMT----  151 (273)
T ss_pred             cccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCe----
Confidence                 389999999 99999988543    1236899999999999999999999999999999999999976654    


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHH
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  311 (433)
                                             +||+|||.+.......     ....++..|+|||.+.+..++.++|||||||++|||
T Consensus       152 -----------------------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el  208 (273)
T cd05035         152 -----------------------VCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEI  208 (273)
T ss_pred             -----------------------EEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHH
Confidence                                   5556666554332211     112346689999999888899999999999999999


Q ss_pred             Hh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC
Q 013941          312 CS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH  390 (433)
Q Consensus       312 ~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (433)
                      ++ |..||.+....+....+....  .                                               ......
T Consensus       209 ~~~g~~p~~~~~~~~~~~~~~~~~--~-----------------------------------------------~~~~~~  239 (273)
T cd05035         209 ATRGQTPYPGVENHEIYDYLRHGN--R-----------------------------------------------LKQPED  239 (273)
T ss_pred             HhCCCCCCCCCCHHHHHHHHHcCC--C-----------------------------------------------CCCCcC
Confidence            99 999998766544333222100  0                                               001123


Q ss_pred             chHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          391 SAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       391 ~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      .+.++.++|.+||+.||++|||+.|++++
T Consensus       240 ~~~~~~~li~~~l~~~p~~Rp~~~e~~~~  268 (273)
T cd05035         240 CLDELYDLMYSCWRADPKDRPTFTKLREV  268 (273)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            46689999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=2e-40  Score=301.46  Aligned_cols=228  Identities=24%  Similarity=0.366  Sum_probs=180.1

Q ss_pred             cccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-CCCHHH
Q 013941          103 GTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYD  181 (433)
Q Consensus       103 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~  181 (433)
                      |.+|.||+|++..+++.||+|.++....    ..+|...+....|++     ++++++++...+..++||||+ +++|.+
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~----~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~lv~e~~~~~~L~~   74 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE----YSRERLTIIPHCVPN-----MVCLHKYIVSEDSVFLVLQHAEGGKLWS   74 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh----hhhHHHHHHhcCCCc-----eeehhhheecCCeEEEEEecCCCCCHHH
Confidence            8899999999999999999999876432    223444444444554     499999999999999999999 899999


Q ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCee
Q 013941          182 FLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK  261 (433)
Q Consensus       182 ~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~k  261 (433)
                      ++.+..  .+++..+..++.||+.||+|||++||+||||||+||+++.++                           .++
T Consensus        75 ~l~~~~--~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~---------------------------~~~  125 (237)
T cd05576          75 HISKFL--NIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRG---------------------------HIQ  125 (237)
T ss_pred             HHHHhc--CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCC---------------------------CEE
Confidence            997654  699999999999999999999999999999999999997655                           466


Q ss_pred             eecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhh
Q 013941          262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHM  341 (433)
Q Consensus       262 l~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~  341 (433)
                      ++|||.+...........++..|+|||.+.+..++.++||||+||++|+|++|..||.......     .          
T Consensus       126 l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~-----~----------  190 (237)
T cd05576         126 LTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI-----N----------  190 (237)
T ss_pred             EecccchhccccccccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc-----c----------
Confidence            7777765444333333456778999999988889999999999999999999998875321100     0          


Q ss_pred             HHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCH-----HHH
Q 013941          342 VIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKA-----REA  416 (433)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta-----~el  416 (433)
                                   ..                          ........++..+.++|.+||+.||++|+|+     +++
T Consensus       191 -------------~~--------------------------~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~  231 (237)
T cd05576         191 -------------TH--------------------------TTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDI  231 (237)
T ss_pred             -------------cc--------------------------cccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHHH
Confidence                         00                          0001122346789999999999999999986     999


Q ss_pred             hcCCCC
Q 013941          417 LRHPFF  422 (433)
Q Consensus       417 l~hp~f  422 (433)
                      ++||||
T Consensus       232 ~~h~~~  237 (237)
T cd05576         232 KSHPFF  237 (237)
T ss_pred             HcCCCC
Confidence            999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=1e-39  Score=306.98  Aligned_cols=253  Identities=21%  Similarity=0.337  Sum_probs=192.7

Q ss_pred             CCeEEeccccccccEEEEEEEecC----------------CCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE----------------KKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~----------------~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      ++|++.++||+|+||.||+|.+..                ++..||+|++...  ......+.+|+.+++.++|+++   
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i---   81 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNI---   81 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCc---
Confidence            579999999999999999986432                3457999998743  2344678899999999998887   


Q ss_pred             ceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCC---------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCC
Q 013941          154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSY---------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPE  223 (433)
Q Consensus       154 ~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~---------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~  223 (433)
                        +++++++...+..++||||+ +++|.+++.....         ..+++..+..++.||+.||+|||++||+||||||+
T Consensus        82 --~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~  159 (296)
T cd05095          82 --IRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATR  159 (296)
T ss_pred             --ceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChh
Confidence              99999999999999999999 8999999976431         24678899999999999999999999999999999


Q ss_pred             cEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCcc
Q 013941          224 NILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYP  298 (433)
Q Consensus       224 NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~  298 (433)
                      |||++.++                           .++|+|||++.......     ....++..|+|||+..+..++.+
T Consensus       160 Nili~~~~---------------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~  212 (296)
T cd05095         160 NCLVGKNY---------------------------TIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTA  212 (296)
T ss_pred             eEEEcCCC---------------------------CEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccch
Confidence            99997655                           45666666654322111     11234678999999888889999


Q ss_pred             chHHHHHHHHHHHHh--CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHH
Q 013941          299 CDLWSVGCILVELCS--GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK  376 (433)
Q Consensus       299 ~DiwSlG~il~el~~--g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (433)
                      +|||||||++|||++  |..||...+..+...........                  ......                
T Consensus       213 ~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~------------------~~~~~~----------------  258 (296)
T cd05095         213 SDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRD------------------QGRQVY----------------  258 (296)
T ss_pred             hhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhh------------------cccccc----------------
Confidence            999999999999998  77899765554433222111000                  000000                


Q ss_pred             hcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                              ......++..+.+|+.+||+.||++|||+.+|++
T Consensus       259 --------~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~  292 (296)
T cd05095         259 --------LPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHA  292 (296)
T ss_pred             --------CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                    0011234578999999999999999999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-41  Score=324.17  Aligned_cols=201  Identities=29%  Similarity=0.423  Sum_probs=175.6

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC-----
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR-----  165 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~-----  165 (433)
                      .|...+.||+|+||.||+++++.+|+.||||.++..  ....+...+|+++|++++|+||     |+++++-++.     
T Consensus        14 ~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NI-----Vk~f~iee~~~~~~~   88 (732)
T KOG4250|consen   14 LWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNI-----VKLFDIEETKFLGLV   88 (732)
T ss_pred             ceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhh-----hhhcccCCccccCcc
Confidence            477889999999999999999999999999999753  3556778899999999999988     9999877654     


Q ss_pred             -CeEEEEEccC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          166 -NHICIVFEKL-GPSLYDFLRKNSY-RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       166 -~~~~lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                       ....+||||| ||+|...+++-.+ ..+++.+++.++.++..||.|||++|||||||||.||++....           
T Consensus        89 ~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Ge-----------  157 (732)
T KOG4250|consen   89 TRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGE-----------  157 (732)
T ss_pred             cccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecC-----------
Confidence             3578999999 9999999974322 4699999999999999999999999999999999999986533           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                  +.....||+|||.|+..++..  .+++||..|.+||++.. ..|+.-+|.|||||++|+.+||..||.
T Consensus       158 ------------dgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~  225 (732)
T KOG4250|consen  158 ------------DGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFI  225 (732)
T ss_pred             ------------CCceEEeeecccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCC
Confidence                        455678999999999877654  55799999999999995 788999999999999999999999996


Q ss_pred             CC
Q 013941          320 TH  321 (433)
Q Consensus       320 ~~  321 (433)
                      ..
T Consensus       226 p~  227 (732)
T KOG4250|consen  226 PF  227 (732)
T ss_pred             cC
Confidence            43

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-40  Score=294.19  Aligned_cols=253  Identities=22%  Similarity=0.399  Sum_probs=199.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +.|.+++.||+|+|+.|.+++.++|.+.||+|++++.    +...+..+.|..+..+.+    .+|.+|-++.+|+++..
T Consensus       250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~as----n~pflvglhscfqtesr  325 (593)
T KOG0695|consen  250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS----NNPFLVGLHSCFQTESR  325 (593)
T ss_pred             ccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhcc----CCCeEEehhhhhcccce
Confidence            5699999999999999999999999999999999753    233344555666665544    23556999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +++|.||+ ||+|.-.++++.  .++++.++.+...|+.||.|||++|||+||||.+|||++..|++|++|+|+.+....
T Consensus       326 lffvieyv~ggdlmfhmqrqr--klpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l~  403 (593)
T KOG0695|consen  326 LFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLG  403 (593)
T ss_pred             EEEEEEEecCcceeeehhhhh--cCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcCCC
Confidence            99999999 999988887664  899999999999999999999999999999999999998888665555554432222


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC-----
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH-----  321 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~-----  321 (433)
                      +                        .+..++++||+.|.|||++.+..|+..+|+|+|||+++||+.|+.||.-.     
T Consensus       404 ~------------------------gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~  459 (593)
T KOG0695|consen  404 P------------------------GDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNP  459 (593)
T ss_pred             C------------------------CcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCc
Confidence            1                        23345679999999999999999999999999999999999999999521     


Q ss_pred             --ChHHHH-HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          322 --ENLEHL-AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       322 --~~~~~~-~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                        +..+.+ ..|....                                                  ...+...|-.+..+
T Consensus       460 d~ntedylfqvilekq--------------------------------------------------iriprslsvkas~v  489 (593)
T KOG0695|consen  460 DMNTEDYLFQVILEKQ--------------------------------------------------IRIPRSLSVKASHV  489 (593)
T ss_pred             ccchhHHHHHHHhhhc--------------------------------------------------ccccceeehhhHHH
Confidence              111111 1111111                                                  11122334466788


Q ss_pred             HHHhcccCCCCCC------CHHHHhcCCCCCC
Q 013941          399 LQGLLRYDPAERL------KAREALRHPFFTR  424 (433)
Q Consensus       399 i~~~L~~dP~~R~------ta~ell~hp~f~~  424 (433)
                      ++..|++||.+|+      ...++..|+||+.
T Consensus       490 lkgflnkdp~erlgc~~~~g~~dik~h~ffr~  521 (593)
T KOG0695|consen  490 LKGFLNKDPKERLGCRPQTGFSDIKSHAFFRS  521 (593)
T ss_pred             HHHhhcCCcHHhcCCCcccchhhhhcchhhhh
Confidence            9999999999997      4789999999985

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=1.1e-39  Score=302.01  Aligned_cols=245  Identities=24%  Similarity=0.330  Sum_probs=194.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCC---cEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKK---ELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~---~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .+|++.+.||+|+||.||+|++..++   ..+|+|.++..  ......+.+|+.+++++.|+|+     +++++++..++
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~   78 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNI-----IHLEGVVTKSK   78 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCc-----ceEEEEEecCC
Confidence            47999999999999999999876544   37999988643  2344577889999999988887     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..|+||||+ +++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.             
T Consensus        79 ~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~-------------  144 (267)
T cd05066          79 PVMIVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLV-------------  144 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCe-------------
Confidence            999999999 899999997654 36899999999999999999999999999999999999976654             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCCc------ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS------YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                    ++|+|||.+........      ...++..|+|||.+.+..++.++|+|||||++|++++ |..||
T Consensus       145 --------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~  210 (267)
T cd05066         145 --------------CKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPY  210 (267)
T ss_pred             --------------EEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCc
Confidence                          55566665543322111      1123567999999998889999999999999999886 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ......+....+.+... +|                                                .....+..+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~-~~------------------------------------------------~~~~~~~~~~~l  241 (267)
T cd05066         211 WEMSNQDVIKAIEEGYR-LP------------------------------------------------APMDCPAALHQL  241 (267)
T ss_pred             ccCCHHHHHHHHhCCCc-CC------------------------------------------------CCCCCCHHHHHH
Confidence            87665544333322100 00                                                012346689999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q 013941          399 LQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~  418 (433)
                      +.+||+.+|.+||++.++++
T Consensus       242 i~~~l~~~p~~Rp~~~~i~~  261 (267)
T cd05066         242 MLDCWQKDRNERPKFEQIVS  261 (267)
T ss_pred             HHHHcccCchhCCCHHHHHH
Confidence            99999999999999999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=1.2e-39  Score=307.73  Aligned_cols=248  Identities=17%  Similarity=0.298  Sum_probs=193.9

Q ss_pred             CCCeEEeccccccccEEEEEEEec-------CCCcEEEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDN-------EKKELVAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRN  160 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~-------~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~  160 (433)
                      .++|.+.+.||+|+||.||+|+..       .++..||+|.+...  ......+.+|+.+++.+ .|+++     +++++
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i-----~~~~~   88 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI-----INLLG   88 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCc-----hheeE
Confidence            357999999999999999999752       23457999998643  23345678899999999 67777     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcE
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENI  225 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NI  225 (433)
                      ++...+..++||||+ +++|.+++....              ...++...+..++.||+.||.|||++||+||||||+||
T Consensus        89 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Ni  168 (304)
T cd05101          89 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNV  168 (304)
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceE
Confidence            999999999999999 899999997642              13478888999999999999999999999999999999


Q ss_pred             EEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccch
Q 013941          226 LLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCD  300 (433)
Q Consensus       226 li~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~D  300 (433)
                      +++.++.                           ++|+|||.+......     .....++..|+|||++.+..++.++|
T Consensus       169 li~~~~~---------------------------~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  221 (304)
T cd05101         169 LVTENNV---------------------------MKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSD  221 (304)
T ss_pred             EEcCCCc---------------------------EEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhh
Confidence            9976654                           566666655433211     11124567899999999888999999


Q ss_pred             HHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcC
Q 013941          301 LWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR  379 (433)
Q Consensus       301 iwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (433)
                      ||||||++|+|++ |..||.+....+....+.....                                            
T Consensus       222 i~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~--------------------------------------------  257 (304)
T cd05101         222 VWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHR--------------------------------------------  257 (304)
T ss_pred             HHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCc--------------------------------------------
Confidence            9999999999998 8889977655444333221100                                            


Q ss_pred             chhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                           .......+.++.+||.+||..+|++|||+.|+++.
T Consensus       258 -----~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  292 (304)
T cd05101         258 -----MDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVED  292 (304)
T ss_pred             -----CCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHH
Confidence                 00112346789999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1e-39  Score=305.94  Aligned_cols=245  Identities=18%  Similarity=0.331  Sum_probs=191.9

Q ss_pred             CeEEeccccccccEEEEEEEecC-----CCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           93 RYRILSKMGEGTFGQVVECFDNE-----KKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      +|++.+.||+|+||.||+|++..     ....+|+|.+....  .....+.+|+.+++.+.|+++     +++++.+..+
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~   75 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHV-----IKLYGACSQD   75 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCE-----eeEEEEEecC
Confidence            48899999999999999998643     23578999886433  234567889999999988877     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcC----------------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNS----------------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKP  222 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~----------------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp  222 (433)
                      +..++||||+ +++|.+++....                      ...+++..+..++.|++.||+|||++||+||||||
T Consensus        76 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp  155 (290)
T cd05045          76 GPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAA  155 (290)
T ss_pred             CCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhh
Confidence            9999999999 899999986421                      13478899999999999999999999999999999


Q ss_pred             CcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCc
Q 013941          223 ENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNY  297 (433)
Q Consensus       223 ~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~  297 (433)
                      +|||+++++                           .++|+|||++.......     ....++..|+|||.+.+..++.
T Consensus       156 ~nill~~~~---------------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~  208 (290)
T cd05045         156 RNVLVAEGR---------------------------KMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTT  208 (290)
T ss_pred             heEEEcCCC---------------------------cEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcch
Confidence            999997655                           45666666654322111     1124567899999998888999


Q ss_pred             cchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHH
Q 013941          298 PCDLWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK  376 (433)
Q Consensus       298 ~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (433)
                      ++|||||||++|+|++ |..||.+.........+.....                                         
T Consensus       209 ~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~-----------------------------------------  247 (290)
T cd05045         209 QSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYR-----------------------------------------  247 (290)
T ss_pred             HhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCC-----------------------------------------
Confidence            9999999999999998 9999987654443332211000                                         


Q ss_pred             hcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                              .......+.++.++|.+||+.||++||++.|+++
T Consensus       248 --------~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~  281 (290)
T cd05045         248 --------MERPENCSEEMYNLMLTCWKQEPDKRPTFADISK  281 (290)
T ss_pred             --------CCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence                    0011234678999999999999999999999874

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1.1e-39  Score=317.29  Aligned_cols=248  Identities=22%  Similarity=0.329  Sum_probs=192.9

Q ss_pred             CCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccch--hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSIN--KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~  163 (433)
                      ++|.+.++||+|+||.||+|++.     .+++.||+|+++...  ...+.+.+|+.++.++. |+|+     +++++.+.
T Consensus        37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~ni-----v~~~~~~~  111 (401)
T cd05107          37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNI-----VNLLGACT  111 (401)
T ss_pred             HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCe-----EEEEEEEc
Confidence            46889999999999999999853     355789999997532  23346778999999997 7776     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCC------------------------------------------------------
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSY------------------------------------------------------  188 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~------------------------------------------------------  188 (433)
                      ..+..++||||+ +|+|.+++.....                                                      
T Consensus       112 ~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (401)
T cd05107         112 KGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVP  191 (401)
T ss_pred             cCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccc
Confidence            999999999999 9999999975321                                                      


Q ss_pred             ------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEE
Q 013941          189 ------------------------------------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENIL  226 (433)
Q Consensus       189 ------------------------------------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIl  226 (433)
                                                                ..+++..+..++.||+.||+|||++||+||||||+|||
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiL  271 (401)
T cd05107         192 MQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVL  271 (401)
T ss_pred             hhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEE
Confidence                                                      23677788999999999999999999999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchH
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDL  301 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di  301 (433)
                      ++.++.                           ++|+|||++......     .....++..|+|||++.+..++.++||
T Consensus       272 l~~~~~---------------------------~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  324 (401)
T cd05107         272 ICEGKL---------------------------VKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDV  324 (401)
T ss_pred             EeCCCE---------------------------EEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHH
Confidence            976554                           566666665432211     112356788999999998889999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCc
Q 013941          302 WSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL  380 (433)
Q Consensus       302 wSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (433)
                      |||||++|||++ |..||......+........ +.                     +                      
T Consensus       325 wslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~-~~---------------------~----------------------  360 (401)
T cd05107         325 WSFGILLWEIFTLGGTPYPELPMNEQFYNAIKR-GY---------------------R----------------------  360 (401)
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHc-CC---------------------C----------------------
Confidence            999999999998 89999765443332211110 00                     0                      


Q ss_pred             hhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       381 ~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                          ......++.++.+||.+||..+|++||++.+|++.
T Consensus       361 ----~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~  395 (401)
T cd05107         361 ----MAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHL  395 (401)
T ss_pred             ----CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                00112346789999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=1.4e-39  Score=303.39  Aligned_cols=244  Identities=21%  Similarity=0.240  Sum_probs=187.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc----EEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE----LVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      +.|++.+.||+|+||+||+|.+..+++    .+++|.+....  .....+..|+.++.++.|+|+     +++++++. +
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~i-----v~~~~~~~-~   80 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYI-----VRLLGICP-G   80 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCc-----ceEEEEEC-C
Confidence            468999999999999999999877776    47778775322  223456667778888877777     99999875 4


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ...++++||+ +++|.+++.... ..+++..+..++.||+.||.|||++|++||||||+|||++.++             
T Consensus        81 ~~~~~i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~-------------  146 (279)
T cd05111          81 ASLQLVTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDS-------------  146 (279)
T ss_pred             CccEEEEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCC-------------
Confidence            5678899999 999999997654 3689999999999999999999999999999999999997655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                    .+||+|||.+......     .....++..|+|||.+.+..++.++|||||||++|||++ |..||
T Consensus       147 --------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~  212 (279)
T cd05111         147 --------------IVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPY  212 (279)
T ss_pred             --------------cEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCC
Confidence                          4566666665432211     112356778999999998889999999999999999998 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.........+...  ..+                     .                          .....+.++.++
T Consensus       213 ~~~~~~~~~~~~~~~--~~~---------------------~--------------------------~~~~~~~~~~~l  243 (279)
T cd05111         213 AGMRPHEVPDLLEKG--ERL---------------------A--------------------------QPQICTIDVYMV  243 (279)
T ss_pred             CCCCHHHHHHHHHCC--CcC---------------------C--------------------------CCCCCCHHHHHH
Confidence            876544332222110  000                     0                          011234578899


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q 013941          399 LQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~  418 (433)
                      +.+||..||++|||+.|+++
T Consensus       244 i~~c~~~~p~~Rps~~el~~  263 (279)
T cd05111         244 MVKCWMIDENVRPTFKELAN  263 (279)
T ss_pred             HHHHcCCCcccCcCHHHHHH
Confidence            99999999999999999876

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=1.3e-39  Score=301.83  Aligned_cols=245  Identities=24%  Similarity=0.357  Sum_probs=194.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc---EEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE---LVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~---~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ..|++.+.||+|+||.||+|.+..+++   .||||++...  ......+..|+.+++.+.|+|+     +++++++..++
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-----~~~~~~~~~~~   78 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNI-----IHLEGVVTKSR   78 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCc-----ceEEEEECCCC
Confidence            358999999999999999999877664   6999998753  3345678889999999988887     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++||||+ +++|.+++.... ..+++..++.++.|++.||.|||++|++|+||||+||+++.++.             
T Consensus        79 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~-------------  144 (269)
T cd05065          79 PVMIITEFMENGALDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLV-------------  144 (269)
T ss_pred             ceEEEEecCCCCcHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCc-------------
Confidence            999999999 889999987653 36899999999999999999999999999999999999976554             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCCc------ccc--cCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS------YVV--STRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEA  316 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~--gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~  316 (433)
                                    ++|+|||.+........      ...  .+..|+|||.+.+..++.++|||||||++|||++ |..
T Consensus       145 --------------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~  210 (269)
T cd05065         145 --------------CKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGER  210 (269)
T ss_pred             --------------EEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCC
Confidence                          55556655543221110      011  2357999999998889999999999999999886 999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||...+..+....+.... ..|                                                .....+..+.
T Consensus       211 p~~~~~~~~~~~~i~~~~-~~~------------------------------------------------~~~~~~~~~~  241 (269)
T cd05065         211 PYWDMSNQDVINAIEQDY-RLP------------------------------------------------PPMDCPTALH  241 (269)
T ss_pred             CCCCCCHHHHHHHHHcCC-cCC------------------------------------------------CcccCCHHHH
Confidence            998766554444332110 000                                                0123456889


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q 013941          397 DLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +++.+||..+|++||++++|++
T Consensus       242 ~li~~~l~~~p~~Rp~~~~i~~  263 (269)
T cd05065         242 QLMLDCWQKDRNARPKFGQIVS  263 (269)
T ss_pred             HHHHHHcCCChhhCcCHHHHHH
Confidence            9999999999999999999985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=1.5e-39  Score=299.19  Aligned_cols=244  Identities=23%  Similarity=0.339  Sum_probs=195.9

Q ss_pred             eEEeccccccccEEEEEEEecCCC----cEEEEEEeccchh--hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKK----ELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +++.+.||.|+||.||+|.+...+    ..||+|++.....  ....+..|+.+++.+.|+++     +++++++.+.+.
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~   75 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNI-----VKLLGVCTEEEP   75 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCch-----heEEEEEcCCCe
Confidence            356789999999999999988766    8999999975443  45678889999999988777     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .+++|||+ +++|.+++.......+++..+..++.||+.||+|||+.|++|+||||+||+++.++.              
T Consensus        76 ~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~--------------  141 (258)
T smart00219       76 LMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLV--------------  141 (258)
T ss_pred             eEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCe--------------
Confidence            99999999 899999998654333899999999999999999999999999999999999977664              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCc----ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHS----YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTH  321 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~  321 (433)
                                   ++|+|||.+........    ...++..|+|||.+.+..++.++|||||||++|+|++ |..||...
T Consensus       142 -------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~  208 (258)
T smart00219      142 -------------VKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGM  208 (258)
T ss_pred             -------------EEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCC
Confidence                         55566665543332211    1136788999999988889999999999999999998 88999876


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +.......+......                                                 ......+.++.+++.+
T Consensus       209 ~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~i~~  239 (258)
T smart00219      209 SNEEVLEYLKKGYRL-------------------------------------------------PKPENCPPEIYKLMLQ  239 (258)
T ss_pred             CHHHHHHHHhcCCCC-------------------------------------------------CCCCcCCHHHHHHHHH
Confidence            555444433221100                                                 0112246789999999


Q ss_pred             hcccCCCCCCCHHHHhc
Q 013941          402 LLRYDPAERLKAREALR  418 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~  418 (433)
                      ||..||++|||+.|+++
T Consensus       240 ~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      240 CWAEDPEDRPTFSELVE  256 (258)
T ss_pred             HCcCChhhCcCHHHHHh
Confidence            99999999999999985

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-41  Score=293.56  Aligned_cols=282  Identities=27%  Similarity=0.452  Sum_probs=222.4

Q ss_pred             EEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC-----C
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR-----N  166 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~-----~  166 (433)
                      +-.+.||.|+||.||.+++..+|+.||+|++....   .....+.+|+.+|..++|.|+     ...+++.+-.     .
T Consensus        56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNV-----LSaLDILQPph~dfFq  130 (449)
T KOG0664|consen   56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNV-----LSLLDILQPANPSFFQ  130 (449)
T ss_pred             CCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccH-----HHHHHhcCCCCchHHH
Confidence            34579999999999999999999999999886422   334667889999999999887     6766665532     3


Q ss_pred             eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          167 HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       167 ~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .+|+|+|++..+|..++-.-.  .++.+.++-+++||++||+|||+.||.||||||.|+|++++.               
T Consensus       131 EiYV~TELmQSDLHKIIVSPQ--~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNC---------------  193 (449)
T KOG0664|consen  131 ELYVLTELMQSDLHKIIVSPQ--ALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNC---------------  193 (449)
T ss_pred             HHHHHHHHHHhhhhheeccCC--CCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCc---------------
Confidence            578999999889999887654  799999999999999999999999999999999999996544               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                  .+||||||+++..+...    +..+-|.+|+|||++.|. .|+.++||||.|||+.||+..+..|...
T Consensus       194 ------------vLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq  261 (449)
T KOG0664|consen  194 ------------ILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAA  261 (449)
T ss_pred             ------------eEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhcc
Confidence                        67888888887654432    224678899999999986 5999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +..+++..|..++|.+.-+-+...++........+.... |+       ...++        .....+....+..+++.+
T Consensus       262 ~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~-Ps-------~~vLY--------tlsS~~~~~heav~~~~~  325 (449)
T KOG0664|consen  262 GPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRA-PD-------TQRLY--------KIASPDDKNHEAVDLLQK  325 (449)
T ss_pred             ChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCC-CC-------cccee--------eecCCcccchHHHHHHHH
Confidence            999999999999999887776666555544433321110 00       00000        011112233467799999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||.+||++|.+.++++.|++..+..
T Consensus       326 ~l~~d~dkris~~~A~~~~~~~e~R  350 (449)
T KOG0664|consen  326 LLHFDPDKRISVEEALQHRYLEEGR  350 (449)
T ss_pred             HhCCCCcccccHhhhcccccccccc
Confidence            9999999999999999999988753

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=1.1e-39  Score=305.42  Aligned_cols=252  Identities=27%  Similarity=0.418  Sum_probs=195.6

Q ss_pred             CeEEeccccccccEEEEEEEec---CCCcEEEEEEeccch-----hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceec
Q 013941           93 RYRILSKMGEGTFGQVVECFDN---EKKELVAIKIVRSIN-----KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~  163 (433)
                      +|++.+.||+|+||.||++++.   .+++.||||++++..     .....+.+|+.++.++. |+++     +++++.+.
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i-----~~~~~~~~   75 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFL-----VTLHYAFQ   75 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcch-----hhhheeee
Confidence            4889999999999999999864   467889999987432     22345678999999995 6666     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      .++..|+||||+ +++|.+++....  .+++..++.++.|++.||.|||+.|++||||||+||+++.++           
T Consensus        76 ~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~-----------  142 (288)
T cd05583          76 TDTKLHLILDYVNGGELFTHLYQRE--HFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEG-----------  142 (288)
T ss_pred             cCCEEEEEEecCCCCcHHHHHhhcC--CcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCC-----------
Confidence            999999999999 889999987654  689999999999999999999999999999999999997655           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCC--CCccchHHHHHHHHHHHHhCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLG--WNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~--~~~~~DiwSlG~il~el~~g~~  316 (433)
                                      .++|+|||++.......    ....|+..|+|||.+.+..  .+.++||||||+++|+|++|..
T Consensus       143 ----------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~  206 (288)
T cd05583         143 ----------------HVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGAS  206 (288)
T ss_pred             ----------------CEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCC
Confidence                            46677777655432211    1246788999999987754  7889999999999999999999


Q ss_pred             CCCCCChHHHHHHHHH-HhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          317 LFQTHENLEHLAMMER-VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      ||...........+.+ .....                                               .......+..+
T Consensus       207 p~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~l  239 (288)
T cd05583         207 PFTVDGEQNSQSEISRRILKSK-----------------------------------------------PPFPKTMSAEA  239 (288)
T ss_pred             CcccCcccchHHHHHHHHHccC-----------------------------------------------CCCCcccCHHH
Confidence            9964332211111111 00000                                               00112345688


Q ss_pred             HHHHHHhcccCCCCCCC---HHHHhcCCCCCCC
Q 013941          396 IDLLQGLLRYDPAERLK---AREALRHPFFTRD  425 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~t---a~ell~hp~f~~~  425 (433)
                      .++|.+||+.||++|||   +.++|+||||++.
T Consensus       240 ~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~~  272 (288)
T cd05583         240 RDFIQKLLEKDPKKRLGANGADEIKNHPFFQGI  272 (288)
T ss_pred             HHHHHHHhcCCHhhccCcchHHHHhcCcccccC
Confidence            99999999999999998   5678999999874

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.8e-41  Score=329.67  Aligned_cols=244  Identities=23%  Similarity=0.365  Sum_probs=203.1

Q ss_pred             CCeEEeccccccccEEEEEEEecC-----CCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE-----KKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      .+-+..++||+|+||+||+|+...     ....||||.++..  ...+.+|++|++++..++|+||     |+++|++..
T Consensus       486 ~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nI-----VrLlGVC~~  560 (774)
T KOG1026|consen  486 SDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNI-----VRLLGVCRE  560 (774)
T ss_pred             hheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCe-----EEEEEEEcc
Confidence            356778999999999999997532     3468999999854  3467899999999999999988     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcC--------CCC----CCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNS--------YRS----FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~--------~~~----l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      ++.+|+|+||| .|||.+||....        ...    ++..+...|+.||+.|+.||-++.+|||||-..|+||.+.-
T Consensus       561 ~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l  640 (774)
T KOG1026|consen  561 GDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENL  640 (774)
T ss_pred             CCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccce
Confidence            99999999999 999999998533        122    88899999999999999999999999999999999997655


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCccc-----ccCCcccchhhhhCCCCCccchHHHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV-----VSTRHYRAPEVILGLGWNYPCDLWSVGC  306 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~-----~gt~~y~aPE~~~~~~~~~~~DiwSlG~  306 (433)
                      .                           |||+|||+++..-...-+.     .-...|||||.+..+.|+.+|||||+||
T Consensus       641 ~---------------------------VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GV  693 (774)
T KOG1026|consen  641 V---------------------------VKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGV  693 (774)
T ss_pred             E---------------------------EEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhh
Confidence            4                           5555555554332222111     2245799999999999999999999999


Q ss_pred             HHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          307 ILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       307 il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      +|||+++ |..||.+..+.+.++.|.+..                                                 ..
T Consensus       694 vLWEIFsyG~QPy~glSn~EVIe~i~~g~-------------------------------------------------lL  724 (774)
T KOG1026|consen  694 VLWEIFSYGKQPYYGLSNQEVIECIRAGQ-------------------------------------------------LL  724 (774)
T ss_pred             hhhhhhccccCcccccchHHHHHHHHcCC-------------------------------------------------cc
Confidence            9999998 999999999999888775421                                                 12


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHH
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREA  416 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~el  416 (433)
                      ..++.++.++.+|+..||+.+|++||++.||
T Consensus       725 ~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI  755 (774)
T KOG1026|consen  725 SCPENCPTEVYSLMLECWNENPKRRPSFKEI  755 (774)
T ss_pred             cCCCCCCHHHHHHHHHHhhcCcccCCCHHHH
Confidence            2345678899999999999999999999987

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=8.6e-40  Score=313.64  Aligned_cols=248  Identities=22%  Similarity=0.345  Sum_probs=188.2

Q ss_pred             CCeEEeccccccccEEEEEEEe-----cCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~-----~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~  163 (433)
                      ++|++.+.||+|+||.||+|.+     ..+++.||||+++...  .....+.+|+.++.++. |+|+     +++++++.
T Consensus         7 ~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni-----v~~~~~~~   81 (343)
T cd05103           7 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNV-----VNLLGACT   81 (343)
T ss_pred             hHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccH-----hhhcceee
Confidence            5799999999999999999984     3567899999987532  33456778999999995 5565     99998775


Q ss_pred             c-CCeEEEEEccC-CCCHHHHHHhcCC-----------------------------------------------------
Q 013941          164 Y-RNHICIVFEKL-GPSLYDFLRKNSY-----------------------------------------------------  188 (433)
Q Consensus       164 ~-~~~~~lv~e~~-~~~L~~~l~~~~~-----------------------------------------------------  188 (433)
                      . +..+++||||+ +++|.+++.....                                                     
T Consensus        82 ~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (343)
T cd05103          82 KPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDV  161 (343)
T ss_pred             cCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccc
Confidence            4 45789999999 9999999875321                                                     


Q ss_pred             ------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCC
Q 013941          189 ------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK  256 (433)
Q Consensus       189 ------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~  256 (433)
                                  ..+++..+..++.||+.||+|||++||+||||||+|||++.++                         
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~-------------------------  216 (343)
T cd05103         162 EEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENN-------------------------  216 (343)
T ss_pred             hhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCC-------------------------
Confidence                        2367788899999999999999999999999999999997655                         


Q ss_pred             CCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHH
Q 013941          257 SSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMM  330 (433)
Q Consensus       257 ~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i  330 (433)
                        .++|+|||++.......     ....++..|+|||++.+..++.++|||||||++|+|++ |..||............
T Consensus       217 --~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~  294 (343)
T cd05103         217 --VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRR  294 (343)
T ss_pred             --cEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHHHHH
Confidence              45666666654322111     11235667999999998889999999999999999997 99999764332211111


Q ss_pred             HHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCC
Q 013941          331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER  410 (433)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  410 (433)
                      ...                      +...                          ......++++.+++.+||+.||++|
T Consensus       295 ~~~----------------------~~~~--------------------------~~~~~~~~~~~~~~~~cl~~~p~~R  326 (343)
T cd05103         295 LKE----------------------GTRM--------------------------RAPDYTTPEMYQTMLDCWHGEPSQR  326 (343)
T ss_pred             Hhc----------------------cCCC--------------------------CCCCCCCHHHHHHHHHHccCChhhC
Confidence            000                      0000                          0011235678999999999999999


Q ss_pred             CCHHHHhcC
Q 013941          411 LKAREALRH  419 (433)
Q Consensus       411 ~ta~ell~h  419 (433)
                      ||+.||++|
T Consensus       327 ps~~eil~~  335 (343)
T cd05103         327 PTFSELVEH  335 (343)
T ss_pred             cCHHHHHHH
Confidence            999999976

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=2.3e-39  Score=298.11  Aligned_cols=246  Identities=21%  Similarity=0.301  Sum_probs=190.3

Q ss_pred             ccccccccEEEEEEEecC-CC--cEEEEEEeccchh--hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNE-KK--ELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~-~~--~~vavK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|++|.||+|.+.. ++  ..||||.+.....  ..+.+.+|+.++++++|+++     +++++.+.. ...++||
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~-~~~~~v~   74 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENL-----IRLYGVVLT-HPLMMVT   74 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCc-----cceeEEEcC-CeEEEEE
Confidence            478999999999998765 33  3689999875433  45677889999999998888     999998888 8999999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||+ +++|.+++.......+++..++.++.||+.||+|||++|++|+||||+||+++.++.++++|||++......... 
T Consensus        75 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~-  153 (257)
T cd05040          75 ELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH-  153 (257)
T ss_pred             EecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccc-
Confidence            999 999999998754346899999999999999999999999999999999999987765555555443322111000 


Q ss_pred             cCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMM  330 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i  330 (433)
                                          ........++..|+|||.+.+..++.++|||||||++|+|++ |..||...+..+....+
T Consensus       154 --------------------~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~  213 (257)
T cd05040         154 --------------------YVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKI  213 (257)
T ss_pred             --------------------eecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence                                000112356778999999998899999999999999999998 99999876665544443


Q ss_pred             HHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCC
Q 013941          331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER  410 (433)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  410 (433)
                      .......                                                ......+..+.+++.+||+.+|++|
T Consensus       214 ~~~~~~~------------------------------------------------~~~~~~~~~~~~li~~~l~~~p~~R  245 (257)
T cd05040         214 DKEGERL------------------------------------------------ERPEACPQDIYNVMLQCWAHNPADR  245 (257)
T ss_pred             HhcCCcC------------------------------------------------CCCccCCHHHHHHHHHHCCCCcccC
Confidence            3210000                                                0112345689999999999999999


Q ss_pred             CCHHHHhc
Q 013941          411 LKAREALR  418 (433)
Q Consensus       411 ~ta~ell~  418 (433)
                      ||+.++++
T Consensus       246 ps~~~~~~  253 (257)
T cd05040         246 PTFAALRE  253 (257)
T ss_pred             CCHHHHHH
Confidence            99999975

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=1.7e-39  Score=304.20  Aligned_cols=246  Identities=20%  Similarity=0.304  Sum_probs=192.8

Q ss_pred             CCeEEeccccccccEEEEEEEecC-----CCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE-----KKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ++|++.+.||+|+||.||+|.+..     ++..||+|++....  .....+.+|+.+++++.|+++     +++++++.+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i-----v~~~~~~~~   79 (288)
T cd05050           5 NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNI-----VKLLGVCAV   79 (288)
T ss_pred             HhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCch-----heEEEEEcC
Confidence            579999999999999999998743     67889999987532  334567889999999988887     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcC--------------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCC
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNS--------------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPE  223 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~--------------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~  223 (433)
                      ++..++||||+ +++|.+++....                    ...+++..+..++.||+.||.|||++|++||||||+
T Consensus        80 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~  159 (288)
T cd05050          80 GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATR  159 (288)
T ss_pred             CCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHh
Confidence            99999999999 889999997432                    124788889999999999999999999999999999


Q ss_pred             cEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCcc
Q 013941          224 NILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYP  298 (433)
Q Consensus       224 NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~  298 (433)
                      ||+++.++.                           ++|+|||.+......     .....++..|+|||.+.+..++.+
T Consensus       160 nil~~~~~~---------------------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  212 (288)
T cd05050         160 NCLVGENMV---------------------------VKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTE  212 (288)
T ss_pred             heEecCCCc---------------------------eEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCch
Confidence            999976664                           555555555432111     111234567999999998899999


Q ss_pred             chHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHh
Q 013941          299 CDLWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL  377 (433)
Q Consensus       299 ~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (433)
                      +|||||||++|+|++ |..||.+....+....+....  .                                        
T Consensus       213 ~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~~~~~~--~----------------------------------------  250 (288)
T cd05050         213 SDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGN--V----------------------------------------  250 (288)
T ss_pred             hHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCC--C----------------------------------------
Confidence            999999999999998 888997665544333222100  0                                        


Q ss_pred             cCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       378 ~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                             .......+.++.+||.+||+.||++|||+.|+++
T Consensus       251 -------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~  284 (288)
T cd05050         251 -------LSCPDNCPLELYNLMRLCWSKLPSDRPSFASINR  284 (288)
T ss_pred             -------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence                   0011234568999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-40  Score=325.13  Aligned_cols=257  Identities=25%  Similarity=0.427  Sum_probs=217.0

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-----C
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-----R  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-----~  165 (433)
                      ++.|++.+.||.|.+|.||+++++.+++..|+|+........++...|.++|+.+.++    +|++.++++|..     +
T Consensus        18 ~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~h----pnv~~fyg~~~k~~~~~~   93 (953)
T KOG0587|consen   18 ADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHH----PNVATFYGAFIKKDPGNG   93 (953)
T ss_pred             CCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCC----CCcceEEEEEEEecCCCC
Confidence            4569999999999999999999999999999999988888888888999999988754    556999998863     6


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +.+||||||| ||+..|++....+..+.|+.+..|++.++.||.+||.+.++|||||-.|||++.+|             
T Consensus        94 DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~-------------  160 (953)
T KOG0587|consen   94 DQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENA-------------  160 (953)
T ss_pred             CeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccC-------------
Confidence            7999999999 99999999877678899999999999999999999999999999999999998766             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCC-----CCCccchHHHHHHHHHHHHhCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGL-----GWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~-----~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                    .+||+|||.+.....   ...+.+||+.|||||++...     .|+..+|+||||++..||..|.+
T Consensus       161 --------------~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~P  226 (953)
T KOG0587|consen  161 --------------EVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAP  226 (953)
T ss_pred             --------------cEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCC
Confidence                          578888887765443   33557999999999999653     47789999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      |+.+......+-                                               +..+.|......+..++.++.
T Consensus       227 Pl~DmHPmraLF-----------------------------------------------~IpRNPPPkLkrp~kWs~~Fn  259 (953)
T KOG0587|consen  227 PLCDMHPMRALF-----------------------------------------------LIPRNPPPKLKRPKKWSKKFN  259 (953)
T ss_pred             CccCcchhhhhc-----------------------------------------------cCCCCCCccccchhhHHHHHH
Confidence            997654433222                                               222333333444566688999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||..||.+|-.+||+..++|+|||+++.
T Consensus       260 dFIs~cL~Kd~e~RP~~~~ll~hpFi~e~  288 (953)
T KOG0587|consen  260 DFISTCLVKDYEQRPSTEELLKHPFITEQ  288 (953)
T ss_pred             HHHHHHHhhccccCcchhhhccCCccccc
Confidence            99999999999999999999999999954

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=1.9e-39  Score=310.37  Aligned_cols=247  Identities=19%  Similarity=0.308  Sum_probs=193.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCC-------CcEEEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecce
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEK-------KELVAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNW  161 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~  161 (433)
                      .+|++.+.||+|+||.||+|++...       +..||+|+++..  ......+.+|+.+++++ .|+++     ++++++
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i-----v~~~~~   86 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNI-----INLLGA   86 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCe-----eeeeEE
Confidence            4699999999999999999986432       236899988743  23346778899999999 68777     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEE
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENIL  226 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIl  226 (433)
                      +..++.+++||||+ +++|.+++.+..              ...++...+..++.||+.||.|||++||+||||||+|||
T Consensus        87 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nil  166 (334)
T cd05100          87 CTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVL  166 (334)
T ss_pred             EccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEE
Confidence            99999999999999 899999997532              234788889999999999999999999999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchH
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDL  301 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di  301 (433)
                      ++.++.                           ++|+|||++.......     ....++..|+|||++.+..++.++||
T Consensus       167 l~~~~~---------------------------~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  219 (334)
T cd05100         167 VTEDNV---------------------------MKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDV  219 (334)
T ss_pred             EcCCCc---------------------------EEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhh
Confidence            976654                           5566666554332211     11234567999999999889999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCc
Q 013941          302 WSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL  380 (433)
Q Consensus       302 wSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (433)
                      |||||++|||++ |..||.+.+.......+.....                                             
T Consensus       220 ~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~---------------------------------------------  254 (334)
T cd05100         220 WSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHR---------------------------------------------  254 (334)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---------------------------------------------
Confidence            999999999998 8999987665444333321100                                             


Q ss_pred             hhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       381 ~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                          .......+.++.+||.+||+.+|++|||+.|++++
T Consensus       255 ----~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~  289 (334)
T cd05100         255 ----MDKPANCTHELYMIMRECWHAVPSQRPTFKQLVED  289 (334)
T ss_pred             ----CCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence                00112345689999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.2e-39  Score=304.36  Aligned_cols=258  Identities=22%  Similarity=0.321  Sum_probs=189.1

Q ss_pred             CCe-EEeccccccccEEEEEEE----ecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRY-RILSKMGEGTFGQVVECF----DNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y-~~~~~lg~G~~g~V~~~~----~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ++| ++++.||+|+||+||++.    ...+++.||+|+++...  .....+.+|+++++.+.|+++     +++++++..
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~   77 (283)
T cd05080           3 KRYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENI-----VKYKGCCSE   77 (283)
T ss_pred             hhhceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEec
Confidence            456 999999999999998865    34567889999987543  245667789999999988877     999987754


Q ss_pred             --CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          165 --RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       165 --~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                        ...+++||||+ +++|.+++...   .+++..++.++.|++.||+|||++||+||||||+|||++.++.         
T Consensus        78 ~~~~~~~lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~---------  145 (283)
T cd05080          78 QGGKGLQLIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRL---------  145 (283)
T ss_pred             CCCceEEEEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCc---------
Confidence              35689999999 99999999764   4999999999999999999999999999999999999976654         


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                        ++|+|||++.......      ....++..|+|||.+.+..++.++|||||||++|+|++|.
T Consensus       146 ------------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~  207 (283)
T cd05080         146 ------------------VKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHC  207 (283)
T ss_pred             ------------------EEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCC
Confidence                              5566666554332211      1124566799999998888999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||......- ...+....+....                             .........    ..........+.++
T Consensus       208 ~p~~~~~~~~-~~~~~~~~~~~~~-----------------------------~~~~~~~~~----~~~~~~~~~~~~~~  253 (283)
T cd05080         208 DSKQSPPKKF-EEMIGPKQGQMTV-----------------------------VRLIELLER----GMRLPCPKNCPQEV  253 (283)
T ss_pred             CCCCCCcchh-hhhhcccccccch-----------------------------hhhhhhhhc----CCCCCCCCCCCHHH
Confidence            9986533210 0000000000000                             000000000    00001123456799


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q 013941          396 IDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+++.+||+.||++|||++++++
T Consensus       254 ~~li~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         254 YILMKNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             HHHHHHHhccChhhCCCHHHHHH
Confidence            99999999999999999999984

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=2.5e-39  Score=297.93  Aligned_cols=237  Identities=24%  Similarity=0.365  Sum_probs=184.8

Q ss_pred             cccccccEEEEEEEec--CCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEcc
Q 013941           99 KMGEGTFGQVVECFDN--EKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEK  174 (433)
Q Consensus        99 ~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~  174 (433)
                      .||+|+||.||+|.+.  .++..||+|++....  ...+.+.+|+.+++++.|+++     ++++++++. +..++||||
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----i~~~~~~~~-~~~~lv~e~   75 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYI-----VRMIGVCEA-EALMLVMEM   75 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCe-----EEEEEEEcC-CCeEEEEEe
Confidence            4899999999999764  455679999986543  234567889999999988877     999998764 578999999


Q ss_pred             C-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccC
Q 013941          175 L-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN  253 (433)
Q Consensus       175 ~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~  253 (433)
                      + +++|.+++.... ..+++..+..++.||+.||+|||++|++||||||+|||++.++.                     
T Consensus        76 ~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~---------------------  133 (257)
T cd05115          76 ASGGPLNKFLSGKK-DEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHY---------------------  133 (257)
T ss_pred             CCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCc---------------------
Confidence            9 999999987543 36899999999999999999999999999999999999976554                     


Q ss_pred             CCCCCCeeeecCCCCccccCCCc------ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHH
Q 013941          254 LPKSSAIKLIDFGSTTFEHQDHS------YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEH  326 (433)
Q Consensus       254 ~~~~~~~kl~Dfg~a~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~  326 (433)
                            ++|+|||++........      ...++..|+|||++.+..++.++|||||||++|++++ |..||......+.
T Consensus       134 ------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~  207 (257)
T cd05115         134 ------AKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEV  207 (257)
T ss_pred             ------EEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHH
Confidence                  56666665543222111      1123568999999988889999999999999999996 9999987665544


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+....                       .                          .......+.++.++|.+||..|
T Consensus       208 ~~~~~~~~-----------------------~--------------------------~~~~~~~~~~l~~li~~c~~~~  238 (257)
T cd05115         208 MSFIEQGK-----------------------R--------------------------LDCPAECPPEMYALMKDCWIYK  238 (257)
T ss_pred             HHHHHCCC-----------------------C--------------------------CCCCCCCCHHHHHHHHHHcCCC
Confidence            33222110                       0                          0011234678999999999999


Q ss_pred             CCCCCCHHHHhc
Q 013941          407 PAERLKAREALR  418 (433)
Q Consensus       407 P~~R~ta~ell~  418 (433)
                      |++||++.+|++
T Consensus       239 ~~~Rp~~~~i~~  250 (257)
T cd05115         239 WEDRPNFAKVEE  250 (257)
T ss_pred             hhhCcCHHHHHH
Confidence            999999999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=1.5e-39  Score=327.65  Aligned_cols=272  Identities=21%  Similarity=0.302  Sum_probs=176.0

Q ss_pred             CCCeEEeccccccccEEEEEEEecCC----CcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecce-----
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEK----KELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNW-----  161 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~----~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~-----  161 (433)
                      .++|++.+.||+|+||.||+|++..+    +..||+|++.....      .|+.+..++.+...  .++..+...     
T Consensus       131 ~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~------~e~~~~e~l~~~~~--~~~~~~~~~~~~~~  202 (566)
T PLN03225        131 KDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA------VEIWMNERVRRACP--NSCADFVYGFLEPV  202 (566)
T ss_pred             cCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch------hHHHHHHHHHhhch--hhHHHHHHhhhccc
Confidence            46899999999999999999999988    89999998754221      12222222222110  001111111     


Q ss_pred             -eccCCeEEEEEccC-CCCHHHHHHhcCCC------------------CCCHHHHHHHHHHHHHHHHHHHhCCcEecCCC
Q 013941          162 -FDYRNHICIVFEKL-GPSLYDFLRKNSYR------------------SFPIDLVRELGRQLLESVAFMHELRLIHTDLK  221 (433)
Q Consensus       162 -~~~~~~~~lv~e~~-~~~L~~~l~~~~~~------------------~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDik  221 (433)
                       ...+..+++||||+ +++|.+++......                  ......+..++.||+.||+|||++||+|||||
T Consensus       203 ~~~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLK  282 (566)
T PLN03225        203 SSKKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVK  282 (566)
T ss_pred             ccccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCC
Confidence             24567899999999 89999998754310                  11234567899999999999999999999999


Q ss_pred             CCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCC---
Q 013941          222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLG---  294 (433)
Q Consensus       222 p~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~---  294 (433)
                      |+|||++.+                          ...+||+|||+|......    .....+|+.|+|||.+....   
T Consensus       283 P~NILl~~~--------------------------~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~  336 (566)
T PLN03225        283 PQNIIFSEG--------------------------SGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTP  336 (566)
T ss_pred             HHHEEEeCC--------------------------CCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCC
Confidence            999999642                          235788888887643321    23457899999999764322   


Q ss_pred             -------------------CCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcC
Q 013941          295 -------------------WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR  355 (433)
Q Consensus       295 -------------------~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~  355 (433)
                                         ++.++|||||||+||||+++..++.  .....+..+....+.....+.....        .
T Consensus       337 ~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~--------~  406 (566)
T PLN03225        337 SAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSD--SNLIQFNRQLKRNDYDLVAWRKLVE--------P  406 (566)
T ss_pred             CCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCc--hHHHHHHHHHHhcCCcHHHHHHhhc--------c
Confidence                               3446799999999999999776543  2222222222211111110000000        0


Q ss_pred             CccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          356 GARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      .         .. ...          .......+.......+||.+||++||++|||+.|+|+||||++..
T Consensus       407 ~---------~~-~~~----------~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~Hpff~~~~  457 (566)
T PLN03225        407 R---------AS-PDL----------RRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAALAHPYFDREG  457 (566)
T ss_pred             c---------cc-hhh----------hhhhhhccccchHHHHHHHHHccCCcccCCCHHHHhCCcCcCCCC
Confidence            0         00 000          000111223345677999999999999999999999999998753

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=2.3e-39  Score=300.38  Aligned_cols=240  Identities=22%  Similarity=0.288  Sum_probs=185.8

Q ss_pred             ccccccccEEEEEEEecCCCc--EEEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKE--LVAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~--~vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +.||+|+||.||+|++..++.  .+|+|.++..  ....+.+.+|+.++.++ .|+++     +++++++...+..++||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i-----v~~~~~~~~~~~~~lv~   75 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI-----INLLGACEHRGYLYLAI   75 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCe-----eeEEEEEecCCCceEEE
Confidence            368999999999999888775  4688887642  33445678899999999 57666     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          173 EKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      ||+ +++|.+++....              ...+++..++.++.||+.||+|||++||+||||||+|||++.++.     
T Consensus        76 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~-----  150 (270)
T cd05047          76 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYV-----  150 (270)
T ss_pred             EeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCe-----
Confidence            999 899999997542              124789999999999999999999999999999999999976654     


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-C
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-G  314 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g  314 (433)
                                            ++|+|||++.......  .....+..|+|||++.+..++.++|||||||++|||++ |
T Consensus       151 ----------------------~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g  208 (270)
T cd05047         151 ----------------------AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLG  208 (270)
T ss_pred             ----------------------EEECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCC
Confidence                                  5566666553221111  11123567999999988889999999999999999997 9


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      ..||.+.+..+....+....                                                 ........+.+
T Consensus       209 ~~pf~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~  239 (270)
T cd05047         209 GTPYCGMTCAELYEKLPQGY-------------------------------------------------RLEKPLNCDDE  239 (270)
T ss_pred             CCCccccCHHHHHHHHhCCC-------------------------------------------------CCCCCCcCCHH
Confidence            99997655443332221100                                                 00011234568


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhc
Q 013941          395 LIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +.+|+.+||+.||.+|||+.++++
T Consensus       240 ~~~li~~~l~~~p~~Rps~~~il~  263 (270)
T cd05047         240 VYDLMRQCWREKPYERPSFAQILV  263 (270)
T ss_pred             HHHHHHHHcccChhhCCCHHHHHH
Confidence            899999999999999999999985

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=2.4e-39  Score=301.05  Aligned_cols=248  Identities=20%  Similarity=0.297  Sum_probs=194.8

Q ss_pred             CCeEEeccccccccEEEEEEEecC-----CCcEEEEEEeccchh--hHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE-----KKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ++|++++.||+|+||.||+|+...     +.+.|++|.+.....  ..+.+.+|+++++++.|+++     +++++++.+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~   79 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNV-----VRLLGLCRE   79 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcce-----eeeEEEECC
Confidence            469999999999999999999654     346799998864332  35678899999999998877     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCC-------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSY-------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                      .+..|+||||+ +++|.+++.....       ..+++..+..++.||+.||+|||++||+||||||+||+++.++.++++
T Consensus        80 ~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~  159 (275)
T cd05046          80 AEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVS  159 (275)
T ss_pred             CCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEc
Confidence            99999999999 8999999976541       158999999999999999999999999999999999999877655544


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccC----CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHH
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~  312 (433)
                                                 |||.+.....    ......++..|+|||.+.+..++.++||||||+++|+|+
T Consensus       160 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~  212 (275)
T cd05046         160 ---------------------------LLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVF  212 (275)
T ss_pred             ---------------------------ccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHH
Confidence                                       4444432111    111235567799999998888899999999999999999


Q ss_pred             h-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          313 S-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       313 ~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      + |..||...........+....                        ..|+                        .....
T Consensus       213 ~~~~~p~~~~~~~~~~~~~~~~~------------------------~~~~------------------------~~~~~  244 (275)
T cd05046         213 TQGELPFYGLSDEEVLNRLQAGK------------------------LELP------------------------VPEGC  244 (275)
T ss_pred             hCCCCCccccchHHHHHHHHcCC------------------------cCCC------------------------CCCCC
Confidence            9 888997655444333222110                        0010                        11244


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      +..+.++|.+||+.||++|||+.|++++
T Consensus       245 ~~~l~~~i~~~l~~~p~~Rp~~~~~l~~  272 (275)
T cd05046         245 PSRLYKLMTRCWAVNPKDRPSFSELVSA  272 (275)
T ss_pred             CHHHHHHHHHHcCCCcccCCCHHHHHHH
Confidence            6789999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2.6e-39  Score=302.32  Aligned_cols=260  Identities=22%  Similarity=0.345  Sum_probs=190.2

Q ss_pred             CeEEeccccccccEEEEEEEe----cCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC-
Q 013941           93 RYRILSKMGEGTFGQVVECFD----NEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR-  165 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~----~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~-  165 (433)
                      -|++++.||+|+||.||+|..    ..+++.||+|.++..  ......+.+|+.+++.+.|+++     +++++++... 
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~   79 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENI-----VKYKGICTEDG   79 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCe-----eeeeeEEecCC
Confidence            378999999999999999974    457889999998643  2334568889999999988877     9998888764 


Q ss_pred             -CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          166 -NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       166 -~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                       ...++||||+ +++|.+++.+.. ..+++..+..++.||+.||+|||++||+||||||+||+++.++.           
T Consensus        80 ~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~-----------  147 (284)
T cd05079          80 GNGIKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQ-----------  147 (284)
T ss_pred             CCceEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCC-----------
Confidence             6789999999 999999997653 35899999999999999999999999999999999999977664           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                      ++|+|||++.......      ....++..|+|||++.+..++.++|||||||++|+|+++..|
T Consensus       148 ----------------~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~  211 (284)
T cd05079         148 ----------------VKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDS  211 (284)
T ss_pred             ----------------EEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCC
Confidence                            4555555544322111      123567789999999888899999999999999999998776


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      +.....     ......++.+....                        ............     .......++..+.+
T Consensus       212 ~~~~~~-----~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~~  257 (284)
T cd05079         212 ESSPMT-----LFLKMIGPTHGQMT------------------------VTRLVRVLEEGK-----RLPRPPNCPEEVYQ  257 (284)
T ss_pred             Cccccc-----hhhhhccccccccc------------------------HHHHHHHHHcCc-----cCCCCCCCCHHHHH
Confidence            533211     00111111110000                        000000000000     01112345779999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcC
Q 013941          398 LLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ||.+||+.||++|||+++++++
T Consensus       258 li~~~l~~~p~~Rpt~~~il~~  279 (284)
T cd05079         258 LMRKCWEFQPSKRTTFQNLIEG  279 (284)
T ss_pred             HHHHHccCCcccCcCHHHHHHH
Confidence            9999999999999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=2.6e-39  Score=300.69  Aligned_cols=243  Identities=22%  Similarity=0.307  Sum_probs=185.9

Q ss_pred             cccccccEEEEEEEecCC------------------------CcEEEEEEeccchh-hHHHHHHHHHHHHHHHhCCCCCc
Q 013941           99 KMGEGTFGQVVECFDNEK------------------------KELVAIKIVRSINK-YREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        99 ~lg~G~~g~V~~~~~~~~------------------------~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      .||+|+||.||+|....+                        ...||+|++..... ....+.+|+.+++.++|+|+   
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~ni---   78 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHL---   78 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCe---
Confidence            699999999999974321                        23588998864332 23456778888888888877   


Q ss_pred             ceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCc
Q 013941          154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEY  232 (433)
Q Consensus       154 ~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~  232 (433)
                        +++++++......++||||+ +++|..++.... ..+++..+..++.||+.||+|||++||+||||||+|||++..+.
T Consensus        79 --v~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~  155 (274)
T cd05076          79 --AFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEK-GRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGL  155 (274)
T ss_pred             --eeEEEEEEeCCceEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCc
Confidence              99999999999999999999 899998887543 36899999999999999999999999999999999999986542


Q ss_pred             ccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHH
Q 013941          233 VKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       233 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el  311 (433)
                      ..                    .....++++|||.+...... ....++..|+|||.+.+ ..++.++|||||||++|||
T Consensus       156 ~~--------------------~~~~~~kl~d~g~~~~~~~~-~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el  214 (274)
T cd05076         156 AE--------------------GTSPFIKLSDPGVSFTALSR-EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEI  214 (274)
T ss_pred             cc--------------------CccceeeecCCccccccccc-cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHH
Confidence            10                    12234799999987543222 22367888999998876 4689999999999999998


Q ss_pred             H-hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC
Q 013941          312 C-SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH  390 (433)
Q Consensus       312 ~-~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (433)
                      + +|..||......+....+.. ...                                                  ....
T Consensus       215 ~~~g~~p~~~~~~~~~~~~~~~-~~~--------------------------------------------------~~~~  243 (274)
T cd05076         215 CFDGEVPLKERTPSEKERFYEK-KHR--------------------------------------------------LPEP  243 (274)
T ss_pred             HhCCCCCccccChHHHHHHHHh-ccC--------------------------------------------------CCCC
Confidence            5 69999976544332111110 000                                                  0112


Q ss_pred             chHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          391 SAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       391 ~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      .+..+.++|.+||+.+|++|||+.+++++
T Consensus       244 ~~~~~~~li~~cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         244 SCKELATLISQCLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             CChHHHHHHHHHcccChhhCcCHHHHHHh
Confidence            24578999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=3.5e-39  Score=297.86  Aligned_cols=244  Identities=22%  Similarity=0.268  Sum_probs=186.3

Q ss_pred             ccccccccEEEEEEEecC------------CCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           98 SKMGEGTFGQVVECFDNE------------KKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~------------~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      +.||+|+||.||+|+...            ....||+|++.... .....+..|+.++..+.|+|+     +++++++..
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~i-----v~~~~~~~~   75 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHI-----VLLYGVCVR   75 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCE-----eeEEEEEec
Confidence            468999999999998532            22358999876433 233456778889999988877     999999998


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ....++||||+ +++|..++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++..+         
T Consensus        76 ~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~---------  145 (262)
T cd05077          76 DVENIMVEEFVEFGPLDLFMHRKS-DVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDG---------  145 (262)
T ss_pred             CCCCEEEEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccC---------
Confidence            88999999999 889988886543 3689999999999999999999999999999999999997655211         


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhh-CCCCCccchHHHHHHHHHHHH-hCCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELC-SGEALFQTH  321 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlG~il~el~-~g~~pf~~~  321 (433)
                                 .....++++|||.+...... ....++..|+|||++. +..++.++|||||||++|||+ +|..||...
T Consensus       146 -----------~~~~~~~l~d~g~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~  213 (262)
T cd05077         146 -----------ECGPFIKLSDPGIPITVLSR-QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDK  213 (262)
T ss_pred             -----------CCCceeEeCCCCCCccccCc-ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCc
Confidence                       12234789999988654322 2346788999999987 456899999999999999998 588888754


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      ...+... +...  .                                                .......+.++.+||.+
T Consensus       214 ~~~~~~~-~~~~--~------------------------------------------------~~~~~~~~~~~~~li~~  242 (262)
T cd05077         214 TLAEKER-FYEG--Q------------------------------------------------CMLVTPSCKELADLMTH  242 (262)
T ss_pred             chhHHHH-HHhc--C------------------------------------------------ccCCCCChHHHHHHHHH
Confidence            3322111 0000  0                                                00011234578999999


Q ss_pred             hcccCCCCCCCHHHHhcC
Q 013941          402 LLRYDPAERLKAREALRH  419 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~h  419 (433)
                      ||+.||++||++.+|+++
T Consensus       243 cl~~dp~~Rp~~~~il~~  260 (262)
T cd05077         243 CMNYDPNQRPFFRAIMRD  260 (262)
T ss_pred             HcCCChhhCcCHHHHHHh
Confidence            999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=2.8e-39  Score=299.54  Aligned_cols=245  Identities=20%  Similarity=0.336  Sum_probs=192.2

Q ss_pred             ccccccccEEEEEEEecCCC------cEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           98 SKMGEGTFGQVVECFDNEKK------ELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~------~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +.||+|+||.||+|++....      +.+|+|.+....  .....+.+|+.+++.+.|+++     +++++++...+..+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~   75 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNI-----VKLLGVCLLNEPQY   75 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCe-----eeEeeeecCCCCeE
Confidence            46999999999999876543      689999886533  345677889999999988887     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          170 IVFEKL-GPSLYDFLRKNS-----YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      +||||+ +++|.+++....     ...+++..+..++.||+.||+|||+++++|+||||+||+++.++.           
T Consensus        76 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~-----------  144 (269)
T cd05044          76 IIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGY-----------  144 (269)
T ss_pred             EEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCC-----------
Confidence            999999 899999997532     234788999999999999999999999999999999999976541           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEAL  317 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~p  317 (433)
                                 +....++|+|||++......     .....++..|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       145 -----------~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p  213 (269)
T cd05044         145 -----------DADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQP  213 (269)
T ss_pred             -----------CCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCC
Confidence                       12235777888776543211     112245678999999998899999999999999999998 9999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...+..+....+....                       .                          .......+..+.+
T Consensus       214 ~~~~~~~~~~~~~~~~~-----------------------~--------------------------~~~~~~~~~~~~~  244 (269)
T cd05044         214 YPALNNQEVLQHVTAGG-----------------------R--------------------------LQKPENCPDKIYQ  244 (269)
T ss_pred             CcccCHHHHHHHHhcCC-----------------------c--------------------------cCCcccchHHHHH
Confidence            98766554433321100                       0                          0111234678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q 013941          398 LLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~  418 (433)
                      ||.+||+.+|++||+++++++
T Consensus       245 li~~~l~~~p~~Rp~~~~i~~  265 (269)
T cd05044         245 LMTNCWAQDPSERPTFDRIQE  265 (269)
T ss_pred             HHHHHcCCCcccCCCHHHHHH
Confidence            999999999999999999874

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=3.9e-39  Score=302.56  Aligned_cols=258  Identities=16%  Similarity=0.211  Sum_probs=181.8

Q ss_pred             cCCccCCCeEEeccccccccEEEEEEEecCC---CcEEEEEEeccchhhH--HH-H------HHHHHHHHHHHhCCCCCc
Q 013941           86 IGENLTPRYRILSKMGEGTFGQVVECFDNEK---KELVAIKIVRSINKYR--EA-A------MIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        86 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~--~~-~------~~E~~~l~~l~~~~i~~~  153 (433)
                      +.+...++|++.+.||+|+||.||+|.+..+   +..+|+|+........  +. .      ..++..+.  ....+.|+
T Consensus         6 ~~~i~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~h~   83 (294)
T PHA02882          6 LIDITGKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWK--NIHNIDHL   83 (294)
T ss_pred             eeccCCCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHH--HhccCCCC
Confidence            3455567899999999999999999998877   6677888654322110  00 0      01111121  12344556


Q ss_pred             ceeEecceeccCC----eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          154 RCVQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       154 ~~v~~~~~~~~~~----~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                      +++.+++.+....    ..++++|++..++.+.+....  ..++..++.++.||+.||+|||+++|+||||||+|||++.
T Consensus        84 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~  161 (294)
T PHA02882         84 GIPKYYGCGSFKRCRMYYRFILLEKLVENTKEIFKRIK--CKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDG  161 (294)
T ss_pred             CCCcEEEeeeEecCCceEEEEEEehhccCHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcC
Confidence            6688887654432    458899998778888776543  4688899999999999999999999999999999999976


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcccc----------CCCcccccCCcccchhhhhCCCCCccc
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH----------QDHSYVVSTRHYRAPEVILGLGWNYPC  299 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~  299 (433)
                      ++.                           ++|+|||+|....          .......||+.|+|||++.+..++.++
T Consensus       162 ~~~---------------------------~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~  214 (294)
T PHA02882        162 NNR---------------------------GYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRG  214 (294)
T ss_pred             CCc---------------------------EEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHH
Confidence            554                           5566666654321          111224799999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHH-HhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHh
Q 013941          300 DLWSVGCILVELCSGEALFQTHENLE-HLAMMER-VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL  377 (433)
Q Consensus       300 DiwSlG~il~el~~g~~pf~~~~~~~-~~~~i~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (433)
                      |||||||++|||++|..||.+..... ....... ....+                                        
T Consensus       215 DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~----------------------------------------  254 (294)
T PHA02882        215 DLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRL----------------------------------------  254 (294)
T ss_pred             HHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHh----------------------------------------
Confidence            99999999999999999998763322 2111110 00000                                        


Q ss_pred             cCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       378 ~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                       ....   ......+..+.+++..|+..+|++||+++++++
T Consensus       255 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~  291 (294)
T PHA02882        255 -HEGK---IKIKNANKFIYDFIECVTKLSYEEKPDYDALIK  291 (294)
T ss_pred             -hhhh---hccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence             0000   011234678999999999999999999999874

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=5.2e-39  Score=298.01  Aligned_cols=244  Identities=24%  Similarity=0.325  Sum_probs=192.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCC---CcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEK---KELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|.+.+.||+|+||.||+|.+...   ...||+|.....  ....+.+.+|+.+++.+.|+++     +++++++.+ +
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i-----~~~~~~~~~-~   79 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHI-----VKLIGVITE-N   79 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCch-----hceeEEEcC-C
Confidence            4689999999999999999987544   346899988643  3345678889999999988877     999998875 5


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++|++||||||+||+++.++.             
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~-------------  145 (270)
T cd05056          80 PVWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDC-------------  145 (270)
T ss_pred             CcEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCC-------------
Confidence            578999999 999999997654 36899999999999999999999999999999999999977664             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQT  320 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~  320 (433)
                                    ++|+|||++.......    ....++..|+|||.+.+..++.++|||||||++|+|++ |..||.+
T Consensus       146 --------------~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~  211 (270)
T cd05056         146 --------------VKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQG  211 (270)
T ss_pred             --------------eEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCC
Confidence                          5555555554322211    11234567999999988889999999999999999996 9999987


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ....+....+.....                                                 .......+..+.++|.
T Consensus       212 ~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~li~  242 (270)
T cd05056         212 VKNNDVIGRIENGER-------------------------------------------------LPMPPNCPPTLYSLMT  242 (270)
T ss_pred             CCHHHHHHHHHcCCc-------------------------------------------------CCCCCCCCHHHHHHHH
Confidence            765544433321100                                                 0011334678999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q 013941          401 GLLRYDPAERLKAREALR  418 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~  418 (433)
                      +||..+|++|||+.++++
T Consensus       243 ~~l~~~P~~Rpt~~~~~~  260 (270)
T cd05056         243 KCWAYDPSKRPRFTELKA  260 (270)
T ss_pred             HHcCCChhhCcCHHHHHH
Confidence            999999999999999875

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.8e-39  Score=294.86  Aligned_cols=238  Identities=24%  Similarity=0.357  Sum_probs=189.1

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ++||+|+||.||+|.+.. ++.||+|++....  .....+.+|+.+++++.|+++     +++++++...+..++||||+
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i-----~~~~~~~~~~~~~~~v~e~~   74 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNI-----VKLIGVCVQKQPIYIVMELV   74 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCe-----EEEEEEEecCCCeEEEEEcC
Confidence            479999999999999877 8999999887533  245677889999999988877     99999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                       +++|.+++.... ..+++..+..++.|++.||+|||++||+||||||+||+++.++.                      
T Consensus        75 ~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~----------------------  131 (251)
T cd05041          75 PGGSLLTFLRKKK-NRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNV----------------------  131 (251)
T ss_pred             CCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCc----------------------
Confidence             899999997643 36889999999999999999999999999999999999976664                      


Q ss_pred             CCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLA  328 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~  328 (433)
                           ++|+|||.+.......     ....++..|+|||.+.+..++.++|||||||++|+|++ |..||..........
T Consensus       132 -----~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~  206 (251)
T cd05041         132 -----LKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRE  206 (251)
T ss_pred             -----EEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHHH
Confidence                 5556666554332111     11123567999999988889999999999999999999 899997765443333


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.....                                                 .......+..+.++|.+||+.+|+
T Consensus       207 ~~~~~~~-------------------------------------------------~~~~~~~~~~~~~li~~~l~~~p~  237 (251)
T cd05041         207 RIESGYR-------------------------------------------------MPAPQLCPEEIYRLMLQCWAYDPE  237 (251)
T ss_pred             HHhcCCC-------------------------------------------------CCCCccCCHHHHHHHHHHhccChh
Confidence            2211100                                                 001123466899999999999999


Q ss_pred             CCCCHHHHhc
Q 013941          409 ERLKAREALR  418 (433)
Q Consensus       409 ~R~ta~ell~  418 (433)
                      +|||+.|+++
T Consensus       238 ~Rp~~~ell~  247 (251)
T cd05041         238 NRPSFSEIYN  247 (251)
T ss_pred             hCcCHHHHHH
Confidence            9999999985

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=8.7e-39  Score=292.98  Aligned_cols=238  Identities=24%  Similarity=0.347  Sum_probs=188.1

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      +.||+|+||.||+|... ++..||+|+++...  .....+.+|+.+++.+.|+++     +++++++...+..++||||+
T Consensus         1 ~~ig~g~~g~vy~~~~~-~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~lv~e~~   74 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-DKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNI-----VKLIGVCTQRQPIYIVMELV   74 (250)
T ss_pred             CccCCCCCceEEEEEec-CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCc-----CeEEEEEecCCccEEEEECC
Confidence            47899999999999854 67889999986532  334567789999999988877     99999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL  254 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~  254 (433)
                       +++|.+++.... ..+++..+..++.|++.||.|||++|++||||||+||+++.++.                      
T Consensus        75 ~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~----------------------  131 (250)
T cd05085          75 PGGDFLSFLRKKK-DELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNV----------------------  131 (250)
T ss_pred             CCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCe----------------------
Confidence             999999987543 35889999999999999999999999999999999999976664                      


Q ss_pred             CCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHH
Q 013941          255 PKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAM  329 (433)
Q Consensus       255 ~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~  329 (433)
                           ++|+|||++.......    ....++..|+|||++.+..++.++||||||+++|++++ |..||.+.........
T Consensus       132 -----~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~  206 (250)
T cd05085         132 -----LKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAREQ  206 (250)
T ss_pred             -----EEECCCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence                 5566666554322111    11234567999999988889999999999999999998 9999987655443332


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAE  409 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  409 (433)
                      +.....                                                 ......++..+.+++.+||+.+|++
T Consensus       207 ~~~~~~-------------------------------------------------~~~~~~~~~~~~~li~~~l~~~p~~  237 (250)
T cd05085         207 VEKGYR-------------------------------------------------MSCPQKCPDDVYKVMQRCWDYKPEN  237 (250)
T ss_pred             HHcCCC-------------------------------------------------CCCCCCCCHHHHHHHHHHcccCccc
Confidence            221100                                                 0111234678999999999999999


Q ss_pred             CCCHHHHhc
Q 013941          410 RLKAREALR  418 (433)
Q Consensus       410 R~ta~ell~  418 (433)
                      |||+.|+++
T Consensus       238 Rp~~~~l~~  246 (250)
T cd05085         238 RPKFSELQK  246 (250)
T ss_pred             CCCHHHHHH
Confidence            999999975

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.2e-39  Score=298.53  Aligned_cols=244  Identities=21%  Similarity=0.296  Sum_probs=192.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc----EEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE----LVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+|++.+.||+|+||.||+|.+..+++    .||+|.+....  .....+.+|+.+++++.|+|+     +++++++.. 
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~-   80 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHV-----VRLLGICLS-   80 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCc-----ceEEEEEec-
Confidence            569999999999999999999876664    58999886543  334567889999999988877     999998876 


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ...++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||+++.++.            
T Consensus        81 ~~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~------------  147 (279)
T cd05057          81 SQVQLITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQH------------  147 (279)
T ss_pred             CceEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCe------------
Confidence            7899999999 999999998654 35899999999999999999999999999999999999976664            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCCcc-----cccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY-----VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~-----~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                     ++|+|||.+.........     ..++..|+|||.+....++.++|||||||++||+++ |..||
T Consensus       148 ---------------~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~  212 (279)
T cd05057         148 ---------------VKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPY  212 (279)
T ss_pred             ---------------EEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCC
Confidence                           555666655433221111     123567999999988889999999999999999998 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+....+....+.... ..                                                ......+.++.++
T Consensus       213 ~~~~~~~~~~~~~~~~-~~------------------------------------------------~~~~~~~~~~~~~  243 (279)
T cd05057         213 EGIPAVEIPDLLEKGE-RL------------------------------------------------PQPPICTIDVYMV  243 (279)
T ss_pred             CCCCHHHHHHHHhCCC-CC------------------------------------------------CCCCCCCHHHHHH
Confidence            8766554433332110 00                                                0012235578999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q 013941          399 LQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~  418 (433)
                      +.+||..||++|||+.++++
T Consensus       244 ~~~~l~~~p~~Rp~~~~l~~  263 (279)
T cd05057         244 LVKCWMIDAESRPTFKELIN  263 (279)
T ss_pred             HHHHcCCChhhCCCHHHHHH
Confidence            99999999999999998864

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=6.3e-39  Score=299.09  Aligned_cols=247  Identities=18%  Similarity=0.258  Sum_probs=193.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecC----CCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNE----KKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      .++|++.+.||+|+||.||+|.+..    ++..|++|++...  ......+.+|+.+++++.|+|+     +++++++..
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni-----~~~~~~~~~   79 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNI-----LPILHVCIE   79 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEec
Confidence            3579999999999999999999876    3578999988643  2334667789999999998888     998887655


Q ss_pred             -CCeEEEEEccC-CCCHHHHHHhcCC------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          165 -RNHICIVFEKL-GPSLYDFLRKNSY------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       165 -~~~~~lv~e~~-~~~L~~~l~~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                       +...++++||+ +++|.+++.....      ..+++..+..++.||+.||+|||+++|+||||||+||+++.++.    
T Consensus        80 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~----  155 (280)
T cd05043          80 DGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQ----  155 (280)
T ss_pred             CCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCc----
Confidence             57889999999 8999999976422      35899999999999999999999999999999999999976654    


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHH
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  311 (433)
                                             +||+|||+++......     ....++..|+|||++.+..++.++|||||||++|++
T Consensus       156 -----------------------~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el  212 (280)
T cd05043         156 -----------------------VKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWEL  212 (280)
T ss_pred             -----------------------EEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHH
Confidence                                   5555666554321111     112456789999999988899999999999999999


Q ss_pred             Hh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC
Q 013941          312 CS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH  390 (433)
Q Consensus       312 ~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (433)
                      ++ |+.||...+..+....+....                       .                          ......
T Consensus       213 ~~~g~~p~~~~~~~~~~~~~~~~~-----------------------~--------------------------~~~~~~  243 (280)
T cd05043         213 MTLGQTPYVEIDPFEMAAYLKDGY-----------------------R--------------------------LAQPIN  243 (280)
T ss_pred             hcCCCCCcCcCCHHHHHHHHHcCC-----------------------C--------------------------CCCCCc
Confidence            99 999998765544332221100                       0                          001123


Q ss_pred             chHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          391 SAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       391 ~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      ++.++.+++.+||+.||++|||+.++++
T Consensus       244 ~~~~~~~li~~~l~~~p~~Rps~~~~~~  271 (280)
T cd05043         244 CPDELFAVMACCWALDPEERPSFSQLVQ  271 (280)
T ss_pred             CCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            4568999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.2e-38  Score=297.78  Aligned_cols=261  Identities=24%  Similarity=0.333  Sum_probs=188.1

Q ss_pred             CCeEEeccccccccEEEEEEE----ecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--
Q 013941           92 PRYRILSKMGEGTFGQVVECF----DNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~----~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--  164 (433)
                      .+|++++.||+|+||.||+|.    +..+++.||+|.+.... .....+.+|+++++++.|+|+     +++++++..  
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~   78 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNI-----VKYKGVCYSAG   78 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCe-----eEEEEEEccCC
Confidence            469999999999999999997    44678899999986543 334567889999999988877     999887643  


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ...+++||||+ +++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+||+++.++.+          
T Consensus        79 ~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~----------  147 (284)
T cd05081          79 RRNLRLVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRV----------  147 (284)
T ss_pred             CCceEEEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeE----------
Confidence            45789999999 999999997643 358999999999999999999999999999999999999776654          


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCCc------ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS------YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                       +|+|||++........      ...++..|+|||++.+..++.++|||||||++|||++|..+
T Consensus       148 -----------------~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~  210 (284)
T cd05081         148 -----------------KIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDK  210 (284)
T ss_pred             -----------------EECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCc
Confidence                             5555555443221111      11234469999999988899999999999999999998877


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      +..... .....    .+....                        .......+.......    .........+.++.+
T Consensus       211 ~~~~~~-~~~~~----~~~~~~------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  257 (284)
T cd05081         211 SCSPPA-EFMRM----MGNDKQ------------------------GQMIVYHLIELLKNN----GRLPAPPGCPAEIYA  257 (284)
T ss_pred             CCCcch-hhhhh----cccccc------------------------cccchHHHHHHHhcC----CcCCCCCCCCHHHHH
Confidence            643221 11110    000000                        000000000000000    000112345678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q 013941          398 LLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~  418 (433)
                      ||.+||..+|++|||+.|+++
T Consensus       258 li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05081         258 IMKECWNNDPSQRPSFSELAL  278 (284)
T ss_pred             HHHHHccCChhhCCCHHHHHH
Confidence            999999999999999999975

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-41  Score=288.62  Aligned_cols=260  Identities=23%  Similarity=0.381  Sum_probs=204.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++.+-+..||.|+||+|++..++.+|+..|||.++..+  +...++..|.+...+-..    .++||++++..-.++..|
T Consensus        64 ~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~----cp~IVkfyGa~F~EGdcW  139 (361)
T KOG1006|consen   64 DNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSN----CPNIVKFYGALFSEGDCW  139 (361)
T ss_pred             chHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcC----CcHHHHHhhhhhcCCcee
Confidence            34566789999999999999999999999999998654  344566677776655432    266699999999999999


Q ss_pred             EEEccCCCCHHHHHH---hcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          170 IVFEKLGPSLYDFLR---KNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       170 lv~e~~~~~L~~~l~---~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      |.||+|..+|..+..   ......++|..+-.|....+.||.||-. .+||||||||+|||++..|              
T Consensus       140 iCMELMd~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G--------------  205 (361)
T KOG1006|consen  140 ICMELMDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHG--------------  205 (361)
T ss_pred             eeHHHHhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCC--------------
Confidence            999999888776543   2233479999999999999999999985 5899999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCC--CCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~--~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                   .+||||||++......  .+.-.|...|||||.+...  .|+-+||+||||++|||+.||..|+.+.
T Consensus       206 -------------~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w  272 (361)
T KOG1006|consen  206 -------------DVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKW  272 (361)
T ss_pred             -------------CEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchH
Confidence                         5788888887654332  2334789999999998643  5899999999999999999999999876


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +.  +++++..+...-|+.+...                                         ...-+++..+..+|..
T Consensus       273 ~s--vfeql~~Vv~gdpp~l~~~-----------------------------------------~~~~~~s~~~~~fint  309 (361)
T KOG1006|consen  273 DS--VFEQLCQVVIGDPPILLFD-----------------------------------------KECVHYSFSMVRFINT  309 (361)
T ss_pred             HH--HHHHHHHHHcCCCCeecCc-----------------------------------------ccccccCHHHHHHHHH
Confidence            65  5555555443322211000                                         0112457789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||.+|-+.||...+++++||++.-
T Consensus       310 Cl~Kd~~~Rpky~~Lk~~~fyr~y  333 (361)
T KOG1006|consen  310 CLIKDRSDRPKYDDLKKFPFYRMY  333 (361)
T ss_pred             HhhcccccCcchhhhhcCchhhhh
Confidence            999999999999999999999853

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=1.4e-38  Score=294.96  Aligned_cols=244  Identities=19%  Similarity=0.248  Sum_probs=181.7

Q ss_pred             ccccccccEEEEEEEecC--CCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           98 SKMGEGTFGQVVECFDNE--KKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~--~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      +.||+|+||.||+|....  ....+|+|.+....  .....+.+|+.+++.+.|+|+     +++++.+...+..|+|||
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~ni-----i~~~~~~~~~~~~~lv~e   75 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNV-----LQCLGQCIESIPYLLVLE   75 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCc-----ceEEEEECCCCceEEEEE
Confidence            469999999999996433  44578899875432  234567789999999988887     999999999999999999


Q ss_pred             cC-CCCHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          174 KL-GPSLYDFLRKNSY---RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      |+ +++|.+++.....   ...++..+..++.||+.||+|||++||+||||||+|||++.++.                 
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~-----------------  138 (269)
T cd05042          76 FCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLS-----------------  138 (269)
T ss_pred             eCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCc-----------------
Confidence            99 8999999976432   23567888999999999999999999999999999999976654                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhC-------CCCCccchHHHHHHHHHHHHh-CCC
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILG-------LGWNYPCDLWSVGCILVELCS-GEA  316 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~-------~~~~~~~DiwSlG~il~el~~-g~~  316 (433)
                                +||+|||++......     .....++..|+|||++..       ..++.++|||||||++|||++ |..
T Consensus       139 ----------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~  208 (269)
T cd05042         139 ----------VKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQ  208 (269)
T ss_pred             ----------EEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCC
Confidence                      566666655432111     112345678999999753       346789999999999999999 888


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||......+.+..+......                       .++.                     .......+..+.
T Consensus       209 p~~~~~~~~~~~~~~~~~~~-----------------------~~~~---------------------~~~~~~~~~~~~  244 (269)
T cd05042         209 PYPDLSDEQVLKQVVREQDI-----------------------KLPK---------------------PQLDLKYSDRWY  244 (269)
T ss_pred             CCCcCCHHHHHHHHhhccCc-----------------------cCCC---------------------CcccccCCHHHH
Confidence            99876655544333221100                       0000                     001123466788


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q 013941          397 DLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +++..|+ .||++|||+++|++
T Consensus       245 ~~~~~~~-~dp~~Rpt~~~v~~  265 (269)
T cd05042         245 EVMQFCW-LDPETRPTAEEVHE  265 (269)
T ss_pred             HHHHHHh-cCcccccCHHHHHH
Confidence            8999888 59999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-39  Score=311.40  Aligned_cols=243  Identities=23%  Similarity=0.329  Sum_probs=197.2

Q ss_pred             eEEeccccccccEEEEEEEecCCCc---E-EEEEEecc----chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKE---L-VAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~---~-vavK~~~~----~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      -.+.++||+|+||.||+|.....+.   . ||+|..+.    ......++.+|+++++.++|+|+     |+++|+....
T Consensus       159 v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NV-----Vr~yGVa~~~  233 (474)
T KOG0194|consen  159 IELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNV-----VRFYGVAVLE  233 (474)
T ss_pred             ccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCE-----EEEEEEEcCC
Confidence            3456899999999999998765422   3 89999873    23556788899999999999888     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ..++||||+| ||+|.++|++... .++..+...++.+.+.||+|||++++|||||-..|+|++.++.            
T Consensus       234 ~Pl~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~------------  300 (474)
T KOG0194|consen  234 EPLMLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGV------------  300 (474)
T ss_pred             CccEEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCe------------
Confidence            9999999999 9999999998763 6999999999999999999999999999999999999987664            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC--c-ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--S-YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQT  320 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~-~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~  320 (433)
                                     +||+|||+++....-.  . ...-...|+|||.+....|+.++|||||||++||+++ |..||.+
T Consensus       301 ---------------vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g  365 (474)
T KOG0194|consen  301 ---------------VKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPG  365 (474)
T ss_pred             ---------------EEeCccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCC
Confidence                           4555555554432100  0 1123457999999999999999999999999999999 8899999


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ....+....+.......+                                                .+...+..+..++.
T Consensus       366 ~~~~~v~~kI~~~~~r~~------------------------------------------------~~~~~p~~~~~~~~  397 (474)
T KOG0194|consen  366 MKNYEVKAKIVKNGYRMP------------------------------------------------IPSKTPKELAKVMK  397 (474)
T ss_pred             CCHHHHHHHHHhcCccCC------------------------------------------------CCCCCHHHHHHHHH
Confidence            998887776643211111                                                11233668889999


Q ss_pred             HhcccCCCCCCCHHHHh
Q 013941          401 GLLRYDPAERLKAREAL  417 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell  417 (433)
                      +|+..||++|+|+.++.
T Consensus       398 ~c~~~~p~~R~tm~~i~  414 (474)
T KOG0194|consen  398 QCWKKDPEDRPTMSTIK  414 (474)
T ss_pred             HhccCChhhccCHHHHH
Confidence            99999999999998875

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.2e-40  Score=331.98  Aligned_cols=271  Identities=27%  Similarity=0.380  Sum_probs=194.2

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec-----
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD-----  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~-----  163 (433)
                      ...|+.++.||+||||.||+++++-+|+.||||++...  ........+|+..|.+|+|+|+     |+++..|.     
T Consensus       478 ~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNV-----VRYysAWVEs~~~  552 (1351)
T KOG1035|consen  478 LNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNV-----VRYYSAWVESTAE  552 (1351)
T ss_pred             hhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcce-----eeeehhhhccCCc
Confidence            45688999999999999999999999999999999754  4555678889999999999987     33222110     


Q ss_pred             -------------------------------------------------------------------------c------
Q 013941          164 -------------------------------------------------------------------------Y------  164 (433)
Q Consensus       164 -------------------------------------------------------------------------~------  164 (433)
                                                                                               +      
T Consensus       553 ~~~~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~  632 (1351)
T KOG1035|consen  553 LTVLEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSN  632 (1351)
T ss_pred             cccccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccc
Confidence                                                                                     0      


Q ss_pred             ---------------------------C--------CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 013941          165 ---------------------------R--------NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA  208 (433)
Q Consensus       165 ---------------------------~--------~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~  208 (433)
                                                 .        ..+||-|||| ..+|.+++..+... -....++++++||+.||.
T Consensus       633 tS~~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~-~~~d~~wrLFreIlEGLa  711 (1351)
T KOG1035|consen  633 TSDSEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFN-SQRDEAWRLFREILEGLA  711 (1351)
T ss_pred             ccccCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccc-hhhHHHHHHHHHHHHHHH
Confidence                                       0        2369999999 66666666665311 147789999999999999


Q ss_pred             HHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-CCcccccCCcccch
Q 013941          209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAP  287 (433)
Q Consensus       209 ~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aP  287 (433)
                      |+|++|||||||||.||++++++.+||.|||++........       .......+.+.-..... ..+..+||.-|+||
T Consensus       712 YIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~-------~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAP  784 (1351)
T KOG1035|consen  712 YIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLE-------SIDQDLSFSTNRAGSNDGDLTSQVGTALYVAP  784 (1351)
T ss_pred             HHHhCceeeccCCcceeEEcCCCCeeecccccchhhhhhhh-------hHhhccCccccccCCCCcccccccceeeeecH
Confidence            99999999999999999999999888888888765322110       00111112211111112 34557999999999


Q ss_pred             hhhhCCC---CCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH-hcCCChhhHHhhhhhhhhhhcCCccccCCC
Q 013941          288 EVILGLG---WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERV-LGPLPHHMVIRADRRAEKYFRRGARLDWPD  363 (433)
Q Consensus       288 E~~~~~~---~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  363 (433)
                      |++.+..   |+.|+||||||+||+||+.   ||...  .+....+..+ -+.+|..                       
T Consensus       785 Ell~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~Ts--MERa~iL~~LR~g~iP~~-----------------------  836 (1351)
T KOG1035|consen  785 ELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTS--MERASILTNLRKGSIPEP-----------------------  836 (1351)
T ss_pred             HHhcccccccccchhhhHHHHHHHHHHhc---cCCch--HHHHHHHHhcccCCCCCC-----------------------
Confidence            9998754   9999999999999999984   56532  2222222221 2223221                       


Q ss_pred             CCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                                           ........+.-..+|++||+.||++||||.|+|++.||-
T Consensus       837 ---------------------~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llp  875 (1351)
T KOG1035|consen  837 ---------------------ADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNSELLP  875 (1351)
T ss_pred             ---------------------cccccccchHHHHHHHHHhcCCCccCCCHHHHhhccCCC
Confidence                                 001111223456899999999999999999999999997

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=7.7e-39  Score=294.77  Aligned_cols=242  Identities=22%  Similarity=0.291  Sum_probs=188.8

Q ss_pred             ccccccccEEEEEEEecCCC----------cEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           98 SKMGEGTFGQVVECFDNEKK----------ELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~----------~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +.||+|+||.||+|.+..++          ..+++|++.........+.+|+.+++.+.|+++     +++++++.. +.
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~-~~   74 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHL-----VKLYGVCVR-DE   74 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcch-----hheeeEEec-CC
Confidence            47999999999999988776          358888876544436778889999999988887     999998877 77


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++..             
T Consensus        75 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~-------------  140 (259)
T cd05037          75 NIMVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLN-------------  140 (259)
T ss_pred             cEEEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccc-------------
Confidence            89999999 999999998654 268999999999999999999999999999999999999765410             


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC--CCCccchHHHHHHHHHHHHh-CCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCS-GEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwSlG~il~el~~-g~~pf~~~~~  323 (433)
                             ......++|+|||++..... .....++..|+|||++.+.  .++.++|||||||++|+|++ |..||...+.
T Consensus       141 -------~~~~~~~kl~Dfg~a~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~  212 (259)
T cd05037         141 -------EGYVPFIKLSDPGIPITVLS-REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSS  212 (259)
T ss_pred             -------cCCceeEEeCCCCccccccc-ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCc
Confidence                   01223589999998876543 2234677889999999876  78999999999999999999 5788865542


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ........ ....                                                  ........+.++|.+||
T Consensus       213 ~~~~~~~~-~~~~--------------------------------------------------~~~~~~~~~~~li~~~l  241 (259)
T cd05037         213 SEKERFYQ-DQHR--------------------------------------------------LPMPDCAELANLINQCW  241 (259)
T ss_pred             hhHHHHHh-cCCC--------------------------------------------------CCCCCchHHHHHHHHHh
Confidence            22111110 0000                                                  00011258899999999


Q ss_pred             ccCCCCCCCHHHHhc
Q 013941          404 RYDPAERLKAREALR  418 (433)
Q Consensus       404 ~~dP~~R~ta~ell~  418 (433)
                      ..||++|||+.++++
T Consensus       242 ~~~p~~Rpt~~~il~  256 (259)
T cd05037         242 TYDPTKRPSFRAILR  256 (259)
T ss_pred             ccChhhCCCHHHHHH
Confidence            999999999999985

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-39  Score=300.85  Aligned_cols=260  Identities=23%  Similarity=0.326  Sum_probs=209.7

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      +--..+..+.++||+|-||.|.+|+- ..+.+||+|+++...  ..+..+.+|+++|.+|+||||     +.++++|..+
T Consensus       534 EfPRs~L~~~ekiGeGqFGEVhLCev-eg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNI-----veLvGVC~~D  607 (807)
T KOG1094|consen  534 EFPRSRLRFKEKIGEGQFGEVHLCEV-EGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNI-----VELLGVCVQD  607 (807)
T ss_pred             hcchhheehhhhhcCcccceeEEEEe-cCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCe-----eEEEeeeecC
Confidence            33346788999999999999999984 447899999998543  446789999999999999988     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +.+|+|+||+ .|+|.+++.++....+.......|+.||+.|++||.+.++|||||.+.|+|++.++             
T Consensus       608 ePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~-------------  674 (807)
T KOG1094|consen  608 DPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEF-------------  674 (807)
T ss_pred             CchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcc-------------
Confidence            9999999999 99999999988544455666778999999999999999999999999999996554             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCCcc-----cccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh--CCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY-----VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS--GEAL  317 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~-----~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~--g~~p  317 (433)
                                    .+||+|||+++..-....+     .+-...|||+|.+..+.++.++|+|+||+++||+++  ...|
T Consensus       675 --------------~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~P  740 (807)
T KOG1094|consen  675 --------------TIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQP  740 (807)
T ss_pred             --------------cEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCc
Confidence                          5677777777644333222     233578999999999999999999999999999876  7899


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |....+.+..+....++...+..                                          .....+.-++..+.+
T Consensus       741 y~~lt~e~vven~~~~~~~~~~~------------------------------------------~~l~~P~~cp~~lye  778 (807)
T KOG1094|consen  741 YSQLTDEQVVENAGEFFRDQGRQ------------------------------------------VVLSRPPACPQGLYE  778 (807)
T ss_pred             hhhhhHHHHHHhhhhhcCCCCcc------------------------------------------eeccCCCcCcHHHHH
Confidence            98888877776665554333211                                          111223456778999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      +|.+||..|-++||+.+++-  -+|++
T Consensus       779 lml~Cw~~es~~RPsFe~lh--~~lq~  803 (807)
T KOG1094|consen  779 LMLRCWRRESEQRPSFEQLH--LFLQE  803 (807)
T ss_pred             HHHHHhchhhhcCCCHHHHH--HHHHH
Confidence            99999999999999999983  44443

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=2e-38  Score=292.66  Aligned_cols=239  Identities=17%  Similarity=0.251  Sum_probs=181.0

Q ss_pred             ccccccccEEEEEEEecC---CCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec-cCCeEEEE
Q 013941           98 SKMGEGTFGQVVECFDNE---KKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD-YRNHICIV  171 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~-~~~~~~lv  171 (433)
                      +.||+|+||.||+|.+..   .+..||+|.+...  ....+.+.+|+.+++.++|+++     +++++++. .++..++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~~~~lv   75 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNV-----LSLLGICLPSEGSPLVV   75 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCc-----ceEEEEeecCCCCcEEE
Confidence            468999999999998653   3457999988542  2334567789999999988887     99988654 46678999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.... ..+++..+..++.||+.||+|||+.+|+||||||+|||++.++.                  
T Consensus        76 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~------------------  136 (262)
T cd05058          76 LPYMKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFT------------------  136 (262)
T ss_pred             EecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCc------------------
Confidence            9999 999999997653 35678888999999999999999999999999999999977664                  


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC-------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCC
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD-------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHE  322 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~  322 (433)
                               +||+|||++......       .....++..|+|||.+.+..++.++|||||||++|||++ |.+||...+
T Consensus       137 ---------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~  207 (262)
T cd05058         137 ---------VKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVD  207 (262)
T ss_pred             ---------EEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence                     455555555422111       112245678999999988889999999999999999999 566776654


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+....+....  .                                               .......+..+.+++.+|
T Consensus       208 ~~~~~~~~~~~~--~-----------------------------------------------~~~~~~~~~~~~~li~~c  238 (262)
T cd05058         208 SFDITVYLLQGR--R-----------------------------------------------LLQPEYCPDPLYEVMLSC  238 (262)
T ss_pred             HHHHHHHHhcCC--C-----------------------------------------------CCCCCcCCHHHHHHHHHH
Confidence            443322221100  0                                               000122356899999999


Q ss_pred             cccCCCCCCCHHHHhc
Q 013941          403 LRYDPAERLKAREALR  418 (433)
Q Consensus       403 L~~dP~~R~ta~ell~  418 (433)
                      |..+|++||++.|+++
T Consensus       239 l~~~p~~Rp~~~~il~  254 (262)
T cd05058         239 WHPKPEMRPTFSELVS  254 (262)
T ss_pred             cCCChhhCCCHHHHHH
Confidence            9999999999999985

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=2e-38  Score=299.11  Aligned_cols=245  Identities=22%  Similarity=0.286  Sum_probs=190.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc----EEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE----LVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      +.|++.+.||+|+||.||+|.+..+++    .||+|.+....  .....+.+|+.+++.+.|+|+     +++++++...
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~ni-----v~~~~~~~~~   81 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHL-----VRLLGVCLSP   81 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCc-----ccEEEEEcCC
Confidence            468999999999999999999877775    47889876432  223457789999999988887     9999988654


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                       ..++++||+ +|+|.+++.... ..+++..+..++.||+.||+|||++||+||||||+||+++.++             
T Consensus        82 -~~~~v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~-------------  146 (303)
T cd05110          82 -TIQLVTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPN-------------  146 (303)
T ss_pred             -CceeeehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCC-------------
Confidence             467999999 899999987653 3589999999999999999999999999999999999996655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                    .+||+|||++.......     ....++..|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       147 --------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~  212 (303)
T cd05110         147 --------------HVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPY  212 (303)
T ss_pred             --------------ceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCC
Confidence                          35666666665432211     11245678999999998889999999999999999997 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+....+....+.. ...++                                                .....+.++.++
T Consensus       213 ~~~~~~~~~~~~~~-~~~~~------------------------------------------------~~~~~~~~~~~l  243 (303)
T cd05110         213 DGIPTREIPDLLEK-GERLP------------------------------------------------QPPICTIDVYMV  243 (303)
T ss_pred             CCCCHHHHHHHHHC-CCCCC------------------------------------------------CCCCCCHHHHHH
Confidence            77554333222211 00000                                                012235578999


Q ss_pred             HHHhcccCCCCCCCHHHHhcC
Q 013941          399 LQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~h  419 (433)
                      +.+||..||++||++.++++.
T Consensus       244 i~~c~~~~p~~Rp~~~~l~~~  264 (303)
T cd05110         244 MVKCWMIDADSRPKFKELAAE  264 (303)
T ss_pred             HHHHcCCChhhCcCHHHHHHH
Confidence            999999999999999998764

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=2.7e-38  Score=293.05  Aligned_cols=244  Identities=19%  Similarity=0.236  Sum_probs=181.4

Q ss_pred             ccccccccEEEEEEEec--CCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           98 SKMGEGTFGQVVECFDN--EKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      +.||+|+||.||+|...  .++..+|+|.++...  .....+.+|+.++++++|+|+     +++++++.+....++|||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~lv~e   75 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNL-----LQCLGQCTEVTPYLLVME   75 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEcCCCCcEEEEE
Confidence            46999999999999754  355679999886543  233467789999999988877     999999999899999999


Q ss_pred             cC-CCCHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          174 KL-GPSLYDFLRKNS---YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      |+ +++|.+++....   ....++..++.++.|++.||+|||++|++||||||+||+++.++.                 
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~-----------------  138 (269)
T cd05087          76 FCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLT-----------------  138 (269)
T ss_pred             CCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCc-----------------
Confidence            99 899999997532   124567788899999999999999999999999999999976554                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCC-------CCCccchHHHHHHHHHHHHh-CCC
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGL-------GWNYPCDLWSVGCILVELCS-GEA  316 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~-------~~~~~~DiwSlG~il~el~~-g~~  316 (433)
                                ++|+|||.+......     .....|+..|+|||++.+.       .++.++|||||||++|||++ |..
T Consensus       139 ----------~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~  208 (269)
T cd05087         139 ----------VKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQ  208 (269)
T ss_pred             ----------EEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCC
Confidence                      556666655432211     1123567889999998643       35789999999999999996 999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||......+.........                       ....+.                     .......+..+.
T Consensus       209 p~~~~~~~~~~~~~~~~~-----------------------~~~~~~---------------------~~~~~~~~~~~~  244 (269)
T cd05087         209 PYRHLSDEQVLTYTVREQ-----------------------QLKLPK---------------------PRLKLPLSDRWY  244 (269)
T ss_pred             CCCCCChHHHHHHHhhcc-----------------------cCCCCC---------------------CccCCCCChHHH
Confidence            997665544322211100                       000000                     001112356788


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q 013941          397 DLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +++..|+ .+|++|||++||+.
T Consensus       245 ~l~~~c~-~~P~~Rpt~~~l~~  265 (269)
T cd05087         245 EVMQFCW-LQPEQRPSAEEVHL  265 (269)
T ss_pred             HHHHHHh-cCcccCCCHHHHHH
Confidence            9999998 68999999999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=2.3e-38  Score=311.40  Aligned_cols=271  Identities=22%  Similarity=0.374  Sum_probs=189.9

Q ss_pred             CCCeEEeccccccccEEEEEEEec----------------CCCcEEEEEEeccchh---------------hHHHHHHHH
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDN----------------EKKELVAIKIVRSINK---------------YREAAMIEI  139 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~----------------~~~~~vavK~~~~~~~---------------~~~~~~~E~  139 (433)
                      .++|++.++||+|+||+||+|.+.                ..++.||||.+.....               ..+....|+
T Consensus       144 ~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~  223 (507)
T PLN03224        144 SDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEA  223 (507)
T ss_pred             ccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHH
Confidence            468999999999999999999742                3456799999864321               112334577


Q ss_pred             HHHHHHHhCCCCCcceeEecceecc--------CCeEEEEEccC-CCCHHHHHHhcCC----------------------
Q 013941          140 DVLQRLARHDIGGTRCVQIRNWFDY--------RNHICIVFEKL-GPSLYDFLRKNSY----------------------  188 (433)
Q Consensus       140 ~~l~~l~~~~i~~~~~v~~~~~~~~--------~~~~~lv~e~~-~~~L~~~l~~~~~----------------------  188 (433)
                      .++.++.|+++.+.+++++++++..        .+..+|||||+ +++|.+++.....                      
T Consensus       224 ~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~  303 (507)
T PLN03224        224 YMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQ  303 (507)
T ss_pred             HHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhccc
Confidence            8888898888878888888887753        35689999999 9999999864210                      


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCC
Q 013941          189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST  268 (433)
Q Consensus       189 ~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a  268 (433)
                      ..+++..++.++.||+.||.|||+++|+||||||+|||++.++                           .++|+|||++
T Consensus       304 ~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~---------------------------~~kL~DFGla  356 (507)
T PLN03224        304 DKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDG---------------------------QVKIIDFGAA  356 (507)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCC---------------------------cEEEEeCcCc
Confidence            1245678899999999999999999999999999999997654                           4677777766


Q ss_pred             ccccCCC--c--ccccCCcccchhhhhCCC--------------------CC--ccchHHHHHHHHHHHHhCCC-CCCCC
Q 013941          269 TFEHQDH--S--YVVSTRHYRAPEVILGLG--------------------WN--YPCDLWSVGCILVELCSGEA-LFQTH  321 (433)
Q Consensus       269 ~~~~~~~--~--~~~gt~~y~aPE~~~~~~--------------------~~--~~~DiwSlG~il~el~~g~~-pf~~~  321 (433)
                      .......  .  ...+|+.|+|||.+....                    ++  .+.||||+||++|+|++|.. ||...
T Consensus       357 ~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~  436 (507)
T PLN03224        357 VDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANI  436 (507)
T ss_pred             cccccCCccCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccch
Confidence            4332211  1  123478999999986432                    11  34799999999999999875 77543


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      ......  +... ..                                  ....|+............+..++...|||.+
T Consensus       437 ~~f~~~--~~~~-~~----------------------------------~~~~~r~~~~~~~~~~~~d~~s~~~~dLi~~  479 (507)
T PLN03224        437 RLFNTE--LRQY-DN----------------------------------DLNRWRMYKGQKYDFSLLDRNKEAGWDLACK  479 (507)
T ss_pred             hhhhhH--Hhhc-cc----------------------------------hHHHHHhhcccCCCcccccccChHHHHHHHH
Confidence            222110  0000 00                                  0000110111111122345567899999999


Q ss_pred             hcccCC---CCCCCHHHHhcCCCCCCC
Q 013941          402 LLRYDP---AERLKAREALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP---~~R~ta~ell~hp~f~~~  425 (433)
                      ||..+|   .+|+|++|+|+||||..+
T Consensus       480 LL~~~~~~~~~RlSa~eaL~Hp~f~~~  506 (507)
T PLN03224        480 LITKRDQANRGRLSVGQALSHRFFLPE  506 (507)
T ss_pred             HhccCCCCcccCCCHHHHhCCCCcCCC
Confidence            999876   689999999999999764

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=3.4e-38  Score=292.36  Aligned_cols=247  Identities=22%  Similarity=0.411  Sum_probs=191.9

Q ss_pred             CeEEeccccccccEEEEEEEecC-CCcEEEEEEeccch-----------hhHHHHHHHHHHHHH-HHhCCCCCcceeEec
Q 013941           93 RYRILSKMGEGTFGQVVECFDNE-KKELVAIKIVRSIN-----------KYREAAMIEIDVLQR-LARHDIGGTRCVQIR  159 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~-~~~~vavK~~~~~~-----------~~~~~~~~E~~~l~~-l~~~~i~~~~~v~~~  159 (433)
                      .|++.+.||+|+||.||+|.+.. +++.+|+|.+....           .....+..|+.++.+ +.|+++     ++++
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i-----~~~~   75 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNI-----VRYY   75 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCe-----eeEE
Confidence            38889999999999999999887 67889999875321           122345567776654 566655     9999


Q ss_pred             ceeccCCeEEEEEccC-CCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccc
Q 013941          160 NWFDYRNHICIVFEKL-GPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKV  235 (433)
Q Consensus       160 ~~~~~~~~~~lv~e~~-~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l  235 (433)
                      +++..++..++||||+ +++|.+++..  .....+++..++.++.|++.||.|||+ .||+|+||||+||+++.++    
T Consensus        76 ~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~----  151 (269)
T cd08528          76 KTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDD----  151 (269)
T ss_pred             eeEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCC----
Confidence            9999999999999999 8899998753  222468999999999999999999996 7899999999999997655    


Q ss_pred             cCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh
Q 013941          236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  313 (433)
                                             .++|+|||.+......  .....|+..|+|||.+.+..++.++||||||+++|+|++
T Consensus       152 -----------------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~  208 (269)
T cd08528         152 -----------------------KVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCT  208 (269)
T ss_pred             -----------------------cEEEecccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHh
Confidence                                   4667777766543322  123468889999999998889999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      |..||...........+.......                                                ......+.
T Consensus       209 g~~p~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~  240 (269)
T cd08528         209 LQPPFYSTNMLSLATKIVEAVYEP------------------------------------------------LPEGMYSE  240 (269)
T ss_pred             CCCcccccCHHHHHHHHhhccCCc------------------------------------------------CCcccCCH
Confidence            999997655444333322211000                                                00113466


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      .+.++|.+||+.||++||++.|+.++
T Consensus       241 ~l~~li~~cl~~~p~~Rp~~~e~~~~  266 (269)
T cd08528         241 DVTDVITSCLTPDAEARPDIIQVSAM  266 (269)
T ss_pred             HHHHHHHHHCCCCCccCCCHHHHHHH
Confidence            89999999999999999999998754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-40  Score=302.26  Aligned_cols=268  Identities=25%  Similarity=0.455  Sum_probs=211.1

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh--------hHHHHHHHHHHHHHHHhCCCCCcceeEe
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--------YREAAMIEIDVLQRLARHDIGGTRCVQI  158 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~E~~~l~~l~~~~i~~~~~v~~  158 (433)
                      ...+.++|-++..||+|||+.||+|.+...++.||||+-..+..        ......+|..|.+.|.|+.|     |++
T Consensus       458 HptLn~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRI-----VKl  532 (775)
T KOG1151|consen  458 HPTLNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRI-----VKL  532 (775)
T ss_pred             CcchHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCccee-----eee
Confidence            34567799999999999999999999999999999998653322        22445678899888888777     999


Q ss_pred             cceecc-CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCccc
Q 013941          159 RNWFDY-RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       159 ~~~~~~-~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~  234 (433)
                      +++|.- .+.+|-|+||| |.+|.-+|..+.  .+++..++.|+.||+.||.||.+..  |||-||||.|||+.+..   
T Consensus       533 YDyfslDtdsFCTVLEYceGNDLDFYLKQhk--lmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~Gt---  607 (775)
T KOG1151|consen  533 YDYFSLDTDSFCTVLEYCEGNDLDFYLKQHK--LMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGT---  607 (775)
T ss_pred             eeeeeeccccceeeeeecCCCchhHHHHhhh--hhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCc---
Confidence            999974 56899999999 889999998775  7999999999999999999999875  99999999999996542   


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC----------cccccCCcccchhhhhCC----CCCccch
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----------SYVVSTRHYRAPEVILGL----GWNYPCD  300 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----------~~~~gt~~y~aPE~~~~~----~~~~~~D  300 (433)
                                           .-+.+||+|||++++.+...          +...||.+|++||.+.-.    ..+.++|
T Consensus       608 ---------------------acGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVD  666 (775)
T KOG1151|consen  608 ---------------------ACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVD  666 (775)
T ss_pred             ---------------------ccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCcccccee
Confidence                                 33467888888887655432          225799999999998644    3689999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCc
Q 013941          301 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL  380 (433)
Q Consensus       301 iwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (433)
                      |||+|||+|..+.|+.||......+.+.....++.                    .....+                   
T Consensus       667 VWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlk--------------------AtEVqF-------------------  707 (775)
T KOG1151|consen  667 VWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILK--------------------ATEVQF-------------------  707 (775)
T ss_pred             eEeeehhhhhhhccCCCCCCchhHHHHHhhhchhc--------------------ceeccC-------------------
Confidence            99999999999999999976544332221111110                    001111                   


Q ss_pred             hhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       381 ~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                           ...+-++.++++||++||++.-++|....++..||||.-..+++
T Consensus       708 -----P~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~dpyllPh~rrs  751 (775)
T KOG1151|consen  708 -----PPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLACDPYLLPHIRRS  751 (775)
T ss_pred             -----CCCCccCHHHHHHHHHHHHhhhhhhhhHHHHccCccccchhhhc
Confidence                 11235678999999999999999999999999999998765554

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.6e-38  Score=295.31  Aligned_cols=260  Identities=22%  Similarity=0.333  Sum_probs=192.7

Q ss_pred             CCeEEeccccccccEEEEEEEec----CCCcEEEEEEeccchh--hHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN----EKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-  164 (433)
                      ..|++.+.||+|+||.||+|...    .+++.||+|++.....  ....+.+|+.+++.+.|+++     +++++++.. 
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i-----~~~~~~~~~~   78 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENI-----VKYKGVCEKP   78 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCCh-----heEEeeeecC
Confidence            35888999999999999999854    3478999999976544  36678899999999998887     999888876 


Q ss_pred             -CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          165 -RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       165 -~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                       ....++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+|+||||+||+++.++           
T Consensus        79 ~~~~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~-----------  146 (284)
T cd05038          79 GGRSLRLIMEYLPSGSLRDYLQRHR-DQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESED-----------  146 (284)
T ss_pred             CCCceEEEEecCCCCCHHHHHHhCc-cccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCC-----------
Confidence             66899999999 899999997654 3589999999999999999999999999999999999997655           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCCCc------ccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS------YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                      .++|+|||.+........      ...++..|+|||.+.+..++.++|||||||++|||++|..
T Consensus       147 ----------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~  210 (284)
T cd05038         147 ----------------LVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGD  210 (284)
T ss_pred             ----------------CEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCC
Confidence                            456666666654432111      1234567999999988889999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||........     ...+....                         ..............    .........+.++.
T Consensus       211 p~~~~~~~~~-----~~~~~~~~-------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  256 (284)
T cd05038         211 PSQSPPAEFL-----RMIGIAQG-------------------------QMIVTRLLELLKEG----ERLPRPPSCPDEVY  256 (284)
T ss_pred             Ccccccchhc-----cccccccc-------------------------cccHHHHHHHHHcC----CcCCCCccCCHHHH
Confidence            9865322110     00000000                         00000000000000    00011123456899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q 013941          397 DLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +|+.+||+.||++|||+.||++
T Consensus       257 ~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05038         257 DLMKLCWEAEPQDRPSFADLIL  278 (284)
T ss_pred             HHHHHHhccChhhCCCHHHHHH
Confidence            9999999999999999999975

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-38  Score=323.54  Aligned_cols=247  Identities=21%  Similarity=0.326  Sum_probs=205.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCC-----cEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKK-----ELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~-----~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      ..+-++.+.||+|.||.||.|......     ..||+|.+++.  .....++.+|..++..+.|+||     |++++++-
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNi-----v~liGv~l  765 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNI-----VSLIGVCL  765 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcce-----eeEEEeec
Confidence            356788999999999999999865432     24899998764  4566789999999999999988     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNS-----YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~-----~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      +....+|++||| ||+|..+|++..     ...++..+...++.||++|++||+++++|||||-..|+|++..       
T Consensus       766 ~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~-------  838 (1025)
T KOG1095|consen  766 DSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDER-------  838 (1025)
T ss_pred             CCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeeccc-------
Confidence            999999999999 999999998751     2568999999999999999999999999999999999998654       


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCccc-----ccCCcccchhhhhCCCCCccchHHHHHHHHHHHH
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV-----VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~-----~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~  312 (433)
                                          ..+||+|||+|+......-+.     .-...|||||.+....++.++|||||||+|||++
T Consensus       839 --------------------r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEif  898 (1025)
T KOG1095|consen  839 --------------------RVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIF  898 (1025)
T ss_pred             --------------------CcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHH
Confidence                                467778888877433322221     1135799999999999999999999999999999


Q ss_pred             h-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          313 S-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       313 ~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      + |..||.+.++.+.+....+.                       ++++.                          +..+
T Consensus       899 slG~~PY~~~~n~~v~~~~~~g-----------------------gRL~~--------------------------P~~C  929 (1025)
T KOG1095|consen  899 SLGATPYPSRSNFEVLLDVLEG-----------------------GRLDP--------------------------PSYC  929 (1025)
T ss_pred             hCCCCCCCCcchHHHHHHHHhC-----------------------CccCC--------------------------CCCC
Confidence            9 99999998888876644331                       12222                          3456


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +..+.++|.+||+.+|++||++..|++
T Consensus       930 P~~ly~lM~~CW~~~pe~RP~F~~i~~  956 (1025)
T KOG1095|consen  930 PEKLYQLMLQCWKHDPEDRPSFRTIVE  956 (1025)
T ss_pred             ChHHHHHHHHHccCChhhCccHHHHHh
Confidence            778999999999999999999999886

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.6e-37  Score=287.73  Aligned_cols=244  Identities=20%  Similarity=0.227  Sum_probs=181.2

Q ss_pred             ccccccccEEEEEEEecCC--CcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           98 SKMGEGTFGQVVECFDNEK--KELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~--~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      +.||+|+||.||++....+  ...+++|.+....  ...+.+.+|+.+++.++|+|+     +++++.+......|+|||
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~i-----v~~~~~~~~~~~~~lv~e   75 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNI-----LQCLGQCVEAIPYLLVFE   75 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcch-----hheEEEecCCCccEEEEe
Confidence            3699999999999975433  3356777765432  345678889999999988887     999999999999999999


Q ss_pred             cC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          174 KL-GPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |+ +++|.+++.+..  ...+++..++.++.||+.||+|||+++|+||||||+|||++.++.                  
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~------------------  137 (268)
T cd05086          76 YCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLT------------------  137 (268)
T ss_pred             cCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCcc------------------
Confidence            99 899999997642  234677788899999999999999999999999999999976654                  


Q ss_pred             ccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhC-------CCCCccchHHHHHHHHHHHHh-CCCC
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILG-------LGWNYPCDLWSVGCILVELCS-GEAL  317 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~-------~~~~~~~DiwSlG~il~el~~-g~~p  317 (433)
                               ++|+|||++.....     ......|+..|+|||++..       ..++.++|||||||++|||++ |..|
T Consensus       138 ---------~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p  208 (268)
T cd05086         138 ---------VKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQP  208 (268)
T ss_pred             ---------EEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCC
Confidence                     56666665532111     1123467889999999853       235789999999999999997 5778


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...+..+.+..+......                       ..+                     ........++.+.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~-----------------------~~~---------------------~~~~~~~~~~~~~~  244 (268)
T cd05086         209 YSHLSDREVLNHVIKDQQV-----------------------KLF---------------------KPQLELPYSERWYE  244 (268)
T ss_pred             CCCCCHHHHHHHHHhhccc-----------------------ccC---------------------CCccCCCCcHHHHH
Confidence            8776665544433221000                       000                     00011234668889


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q 013941          398 LLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~  418 (433)
                      ++..|| .+|++|||+++|++
T Consensus       245 l~~~c~-~~P~~Rp~~~~i~~  264 (268)
T cd05086         245 VLQFCW-LSPEKRATAEEVHR  264 (268)
T ss_pred             HHHHHh-hCcccCCCHHHHHH
Confidence            999999 68999999999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=8.5e-38  Score=290.26  Aligned_cols=245  Identities=16%  Similarity=0.231  Sum_probs=187.0

Q ss_pred             eEEeccccccccEEEEEEEec---CCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC-
Q 013941           94 YRILSKMGEGTFGQVVECFDN---EKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN-  166 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~-  166 (433)
                      |.+.+.||+|+||.||+|.+.   .+++.||||++...   ....+.+.+|+.+++.+.|+++     +++++++.... 
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~   75 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNV-----IKLIGVSLRSRA   75 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCc-----ceEEEEEccCCC
Confidence            677889999999999999864   35789999998653   2344567889999999998887     99999775432 


Q ss_pred             -----eEEEEEccC-CCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          167 -----HICIVFEKL-GPSLYDFLRKNS----YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       167 -----~~~lv~e~~-~~~L~~~l~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                           ..++++||+ +++|.+++....    ...+++..++.++.||+.||+|||++||+||||||+||+++.++.    
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~----  151 (273)
T cd05074          76 KGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMT----  151 (273)
T ss_pred             CCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCC----
Confidence                 357899999 899998875321    125789999999999999999999999999999999999976554    


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHH
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  311 (433)
                                             ++|+|||.+.......     ....++..|++||.+.+..++.++|||||||++|+|
T Consensus       152 -----------------------~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el  208 (273)
T cd05074         152 -----------------------VCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEI  208 (273)
T ss_pred             -----------------------EEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHH
Confidence                                   5666666554332111     122455789999999988899999999999999999


Q ss_pred             Hh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC
Q 013941          312 CS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH  390 (433)
Q Consensus       312 ~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (433)
                      ++ |..||.+.+..+....+....                       ..                          .....
T Consensus       209 ~~~g~~p~~~~~~~~~~~~~~~~~-----------------------~~--------------------------~~~~~  239 (273)
T cd05074         209 MTRGQTPYAGVENSEIYNYLIKGN-----------------------RL--------------------------KQPPD  239 (273)
T ss_pred             hhCCCCCCCCCCHHHHHHHHHcCC-----------------------cC--------------------------CCCCC
Confidence            99 899997665543322221100                       00                          00123


Q ss_pred             chHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          391 SAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       391 ~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      .+..+.+++.+||+.+|++|||+.+++++
T Consensus       240 ~~~~~~~l~~~~l~~~p~~Rps~~~~~~~  268 (273)
T cd05074         240 CLEDVYELMCQCWSPEPKCRPSFQHLRDQ  268 (273)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            45689999999999999999999999853

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-37  Score=292.71  Aligned_cols=242  Identities=20%  Similarity=0.340  Sum_probs=207.2

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      ....++||-|.||.||.+.+++-.-.||||.++.+....++++.|..+++.+.|+|+     |+++++|..+..+|||+|
T Consensus       269 ItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNL-----VqLLGVCT~EpPFYIiTE  343 (1157)
T KOG4278|consen  269 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNL-----VQLLGVCTHEPPFYIITE  343 (1157)
T ss_pred             eeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccH-----HHHhhhhccCCCeEEEEe
Confidence            455789999999999999999988899999998888888999999999999999988     999999999999999999


Q ss_pred             cC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCccc
Q 013941          174 KL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK  252 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~  252 (433)
                      || .|+|.++|++.....++.-...+++.||.+|++||..+++|||||-..|+|+.++.                     
T Consensus       344 fM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnh---------------------  402 (1157)
T KOG4278|consen  344 FMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH---------------------  402 (1157)
T ss_pred             cccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccc---------------------
Confidence            99 99999999987766788888899999999999999999999999999999996654                     


Q ss_pred             CCCCCCCeeeecCCCCccccCCC-ccccc---CCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHH
Q 013941          253 NLPKSSAIKLIDFGSTTFEHQDH-SYVVS---TRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHL  327 (433)
Q Consensus       253 ~~~~~~~~kl~Dfg~a~~~~~~~-~~~~g---t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~  327 (433)
                            .+|++|||+++...... +...|   ...|.|||.+.-+.++.++|||+|||+|||+.| |..||.+.+-.+.+
T Consensus       403 ------iVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY  476 (1157)
T KOG4278|consen  403 ------IVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY  476 (1157)
T ss_pred             ------eEEeeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccHHHHH
Confidence                  57777777777654332 22333   457999999999999999999999999999998 99999998776665


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP  407 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  407 (433)
                      ..+.+.                       .+                          ++.+..+++.+.+|+..||+|+|
T Consensus       477 ~LLEkg-----------------------yR--------------------------M~~PeGCPpkVYeLMraCW~WsP  507 (1157)
T KOG4278|consen  477 GLLEKG-----------------------YR--------------------------MDGPEGCPPKVYELMRACWNWSP  507 (1157)
T ss_pred             HHHhcc-----------------------cc--------------------------ccCCCCCCHHHHHHHHHHhcCCc
Confidence            544331                       11                          22334567899999999999999


Q ss_pred             CCCCCHHHH
Q 013941          408 AERLKAREA  416 (433)
Q Consensus       408 ~~R~ta~el  416 (433)
                      ++||++.|+
T Consensus       508 sDRPsFaei  516 (1157)
T KOG4278|consen  508 SDRPSFAEI  516 (1157)
T ss_pred             ccCccHHHH
Confidence            999998876

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=100.00  E-value=1.1e-37  Score=284.75  Aligned_cols=321  Identities=24%  Similarity=0.406  Sum_probs=217.4

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecC---CCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNE---KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.+.|.++++||+|+|++||++.+..   ..+.||+|.+.... ....+.+|++.|..+.    ++.|++.+.+++..+
T Consensus        33 ~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts-~p~ri~~El~~L~~~g----G~~ni~~~~~~~rnn  107 (418)
T KOG1167|consen   33 FISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS-SPSRILNELEMLYRLG----GSDNIIKLNGCFRNN  107 (418)
T ss_pred             hhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc-CchHHHHHHHHHHHhc----cchhhhcchhhhccC
Confidence            445679999999999999999999877   78899999987543 3356888999999986    335669999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeC-CcccccCcccccc
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSA-EYVKVPDYKFLSR  243 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~-~~~~l~d~~~~~~  243 (433)
                      +.+++||||+ ..+..+++.     .++...++.+++.++.||.++|.+|||||||||+|+|++.. +.-.|.|||++.+
T Consensus       108 d~v~ivlp~~~H~~f~~l~~-----~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  108 DQVAIVLPYFEHDRFRDLYR-----SLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQR  182 (418)
T ss_pred             CeeEEEecccCccCHHHHHh-----cCCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHH
Confidence            9999999999 777777765     47789999999999999999999999999999999999754 6677889999873


Q ss_pred             CCCCC--Ccc-c----CCCCCCCeeeecCCCCc-----------cc--cCCCcccccCCcccchhhhhCC-CCCccchHH
Q 013941          244 SSKDG--SYF-K----NLPKSSAIKLIDFGSTT-----------FE--HQDHSYVVSTRHYRAPEVILGL-GWNYPCDLW  302 (433)
Q Consensus       244 ~~~~~--~~~-~----~~~~~~~~kl~Dfg~a~-----------~~--~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Diw  302 (433)
                      .....  ... .    ....-..-.+-.+..+.           ..  ........||++|+|||++... ..++++|||
T Consensus       183 ~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiw  262 (418)
T KOG1167|consen  183 YDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIW  262 (418)
T ss_pred             HHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCcccee
Confidence            21111  000 0    00000000000111110           00  0111235899999999999875 478999999


Q ss_pred             HHHHHHHHHHhCCCCC-CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhh--hhcCCccccCCCCCCchhhHHHH-HHhc
Q 013941          303 SVGCILVELCSGEALF-QTHENLEHLAMMERVLGPLPHHMVIRADRRAEK--YFRRGARLDWPDGATSRDSMRAV-WKLL  378 (433)
Q Consensus       303 SlG~il~el~~g~~pf-~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~  378 (433)
                      |.|||+..++++..|| ...++...+..+..++|...-.   ++......  ++.+   .+.+............ ....
T Consensus       263 s~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mr---k~A~l~g~~~l~~k---sn~~~~~e~~~~f~s~~~~~~  336 (418)
T KOG1167|consen  263 SAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMR---KCAALPGRILLWQK---SNIPTIPELRVNFETLHIESI  336 (418)
T ss_pred             eccceeehhhccccccccCccccchHHHHHHHhChHHHH---HHhhcCCceeeecc---ccccccHHHHhchhccChhhc
Confidence            9999999999999997 4556677777777777653211   11000000  1110   1111111111111111 0000


Q ss_pred             ---Cchhhhh-hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          379 ---RLPNLIM-QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       379 ---~~~~~~~-~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                         ..++... ...+..+..+.+|+.+||..||.+|+||+++|+||||...
T Consensus       337 ~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkHpFF~~~  387 (418)
T KOG1167|consen  337 YKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKHPFFDEA  387 (418)
T ss_pred             ccccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcCcCCcch
Confidence               0111111 2223445689999999999999999999999999999853

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-37  Score=295.05  Aligned_cols=253  Identities=20%  Similarity=0.297  Sum_probs=202.5

Q ss_pred             CeEEeccccccccEEEEEEEecCC-C--cEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEK-K--ELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~-~--~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +..+.++||+|.||.|++|.+... |  ..||||.++.+.  .....+.+|+.+|.+|.|+++     +++|++.-+ ..
T Consensus       111 ~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hl-----iRLyGvVl~-qp  184 (1039)
T KOG0199|consen  111 QIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHL-----IRLYGVVLD-QP  184 (1039)
T ss_pred             HHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcce-----eEEeeeecc-ch
Confidence            456789999999999999987653 3  368999997543  356789999999999999887     999998877 78


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +.||||++ .|+|.+.|.+.....|.......++.||+.|+.||.++++|||||-..|||+.....+||+|||+++....
T Consensus       185 ~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~  264 (1039)
T KOG0199|consen  185 AMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGE  264 (1039)
T ss_pred             hhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCC
Confidence            89999999 99999999985556788999999999999999999999999999999999997766554444444443333


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                      +.+.+....                     ...-...|+|||.+....++.++|||++||+||||++ |..||.+....+
T Consensus       265 ned~Yvm~p---------------------~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~q  323 (1039)
T KOG0199|consen  265 NEDMYVMAP---------------------QRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQ  323 (1039)
T ss_pred             CCcceEecC---------------------CCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHH
Confidence            322110000                     0112357999999999999999999999999999999 899999999998


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ++..|...-                       +                          +...+.++.++.+++.+||..
T Consensus       324 IL~~iD~~e-----------------------r--------------------------LpRPk~csedIY~imk~cWah  354 (1039)
T KOG0199|consen  324 ILKNIDAGE-----------------------R--------------------------LPRPKYCSEDIYQIMKNCWAH  354 (1039)
T ss_pred             HHHhccccc-----------------------c--------------------------CCCCCCChHHHHHHHHHhccC
Confidence            888775210                       1                          112346688999999999999


Q ss_pred             CCCCCCCHHHHhcCCC
Q 013941          406 DPAERLKAREALRHPF  421 (433)
Q Consensus       406 dP~~R~ta~ell~hp~  421 (433)
                      +|++|||+..|.+.-+
T Consensus       355 ~paDRptFsair~~~~  370 (1039)
T KOG0199|consen  355 NPADRPTFSAIREDLV  370 (1039)
T ss_pred             CccccccHHHHHHhHH
Confidence            9999999998865433

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=305.21  Aligned_cols=256  Identities=23%  Similarity=0.275  Sum_probs=194.7

Q ss_pred             eEEeccccccccEE-EEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           94 YRILSKMGEGTFGQ-VVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        94 y~~~~~lg~G~~g~-V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      |.-.+.+|.|+.|+ ||+|.  ..|+.||||.+-  ......+.+|+..|+.-.    .|+|+|++++.-.++.+.||..
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~--ye~R~VAVKrll--~e~~~~A~rEi~lL~eSD----~H~NviRyyc~E~d~qF~YIal  582 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGV--YEGREVAVKRLL--EEFFDFAQREIQLLQESD----EHPNVIRYYCSEQDRQFLYIAL  582 (903)
T ss_pred             eccHHHcccCCCCcEEEEEe--eCCceehHHHHh--hHhHHHHHHHHHHHHhcc----CCCceEEEEeeccCCceEEEEe
Confidence            44457889999886 69997  568899999864  334456788999988765    2355599999999999999999


Q ss_pred             ccCCCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          173 EKLGPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       173 e~~~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |.|..+|.+++...  ..........+.++.|++.||++||+.+||||||||.||||+...                   
T Consensus       583 ELC~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~-------------------  643 (903)
T KOG1027|consen  583 ELCACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPS-------------------  643 (903)
T ss_pred             hHhhhhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccC-------------------
Confidence            99999999999874  111122245678899999999999999999999999999997632                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhC-CCCCCCCCh
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG-EALFQTHEN  323 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g-~~pf~~~~~  323 (433)
                         .+....++|+|||+++......      ....||.+|+|||++....-+.++|||||||++|+.++| ..||.....
T Consensus       644 ---~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~  720 (903)
T KOG1027|consen  644 ---ADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLE  720 (903)
T ss_pred             ---CCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHH
Confidence               1244578999999887765443      335799999999999998888999999999999999985 999975433


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+  ..|......                                           +    .........++.|||.+||
T Consensus       721 R~--~NIl~~~~~-------------------------------------------L----~~L~~~~d~eA~dLI~~ml  751 (903)
T KOG1027|consen  721 RQ--ANILTGNYT-------------------------------------------L----VHLEPLPDCEAKDLISRML  751 (903)
T ss_pred             hh--hhhhcCccc-------------------------------------------e----eeeccCchHHHHHHHHHhc
Confidence            22  111110000                                           0    0000111127889999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          404 RYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      ..||..||+|.+||.||||....++
T Consensus       752 ~~dP~~RPsa~~VL~HPlFW~~ekr  776 (903)
T KOG1027|consen  752 NPDPQLRPSATDVLNHPLFWDSEKR  776 (903)
T ss_pred             CCCcccCCCHHHHhCCCccCChHHH
Confidence            9999999999999999999986544

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=100.00  E-value=7.2e-36  Score=271.49  Aligned_cols=238  Identities=36%  Similarity=0.596  Sum_probs=191.5

Q ss_pred             ccEEEEEEEecCCCcEEEEEEeccchhh--HHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-CCCHH
Q 013941          104 TFGQVVECFDNEKKELVAIKIVRSINKY--REAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLY  180 (433)
Q Consensus       104 ~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~  180 (433)
                      +||.||+|.+..+++.+|+|++......  .+.+.+|++.+++++|+++     +++++++......++++|++ +++|.
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i-----~~~~~~~~~~~~~~l~~e~~~~~~L~   75 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNI-----VRLYDVFEDEDKLYLVMEYCDGGDLF   75 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcH-----HHHHhheeeCCEEEEEEeCCCCCCHH
Confidence            5899999999988999999998754322  4778899999999988777     99999999889999999999 66999


Q ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCe
Q 013941          181 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI  260 (433)
Q Consensus       181 ~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~  260 (433)
                      +++....  .++...+..++.+++.+|.+||+.||+|+||+|+||+++.++                           .+
T Consensus        76 ~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~---------------------------~~  126 (244)
T smart00220       76 DLLKKRG--RLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDG---------------------------HV  126 (244)
T ss_pred             HHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCC---------------------------cE
Confidence            9998654  389999999999999999999999999999999999997655                           46


Q ss_pred             eeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhcCC
Q 013941          261 KLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE-HLAMMERVLGPL  337 (433)
Q Consensus       261 kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~  337 (433)
                      +|+|||.+......  .....++..|++||.+.+..++.++||||||+++|+|++|..||....... ....+.......
T Consensus       127 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~  206 (244)
T smart00220      127 KLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPF  206 (244)
T ss_pred             EEccccceeeeccccccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCC
Confidence            67777766554432  233567889999999988888999999999999999999999997633322 222221110000


Q ss_pred             ChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHh
Q 013941          338 PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREAL  417 (433)
Q Consensus       338 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell  417 (433)
                      .                                               .....++.++.+++.+||..||++||++.+++
T Consensus       207 ~-----------------------------------------------~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~  239 (244)
T smart00220      207 P-----------------------------------------------PPEWKISPEAKDLIRKLLVKDPEKRLTAEEAL  239 (244)
T ss_pred             c-----------------------------------------------cccccCCHHHHHHHHHHccCCchhccCHHHHh
Confidence            0                                               00011456899999999999999999999999


Q ss_pred             cCCCC
Q 013941          418 RHPFF  422 (433)
Q Consensus       418 ~hp~f  422 (433)
                      +||||
T Consensus       240 ~~~~~  244 (244)
T smart00220      240 QHPFF  244 (244)
T ss_pred             hCCCC
Confidence            99997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=251.77  Aligned_cols=209  Identities=22%  Similarity=0.404  Sum_probs=169.2

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ....+..||+|++|.|-+.++..+|...|+|.++..  ++......+|+.+..+..    ..|..|++++.+...+.+++
T Consensus        47 ~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~----~CPf~V~FyGa~~regdvwI  122 (282)
T KOG0984|consen   47 DLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTV----DCPFTVHFYGALFREGDVWI  122 (282)
T ss_pred             hhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCC----CCCeEEEeehhhhccccEEE
Confidence            355678999999999999999999999999998743  344455666776655432    44677999999999999999


Q ss_pred             EEccCCCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          171 VFEKLGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       171 v~e~~~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      .||.|..+|..+..+  ..+..++|..+-+|+..+++||.|||++ .|||||+||+||||+.+|                
T Consensus       123 cME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~G----------------  186 (282)
T KOG0984|consen  123 CMELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDG----------------  186 (282)
T ss_pred             eHHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCC----------------
Confidence            999999999877653  2235799999999999999999999975 899999999999998766                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCC-cc-cccCCcccchhhhhC----CCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDH-SY-VVSTRHYRAPEVILG----LGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-~~-~~gt~~y~aPE~~~~----~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                 ++|+||||++....+.- .+ -.|...|||||.+..    ..|+-++||||||+++.||.+++.||...
T Consensus       187 -----------qVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w  255 (282)
T KOG0984|consen  187 -----------QVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESW  255 (282)
T ss_pred             -----------cEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccccc
Confidence                       57888888887654432 22 478899999999864    36999999999999999999999999754


Q ss_pred             -ChHHHHHHHHH
Q 013941          322 -ENLEHLAMMER  332 (433)
Q Consensus       322 -~~~~~~~~i~~  332 (433)
                       +..+++.++..
T Consensus       256 ~tpF~qLkqvVe  267 (282)
T KOG0984|consen  256 GTPFQQLKQVVE  267 (282)
T ss_pred             CCHHHHHHHHhc
Confidence             45666665554

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-37  Score=291.71  Aligned_cols=240  Identities=25%  Similarity=0.391  Sum_probs=198.1

Q ss_pred             EEeccccccccEEEEEEEecCC--C--cEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           95 RILSKMGEGTFGQVVECFDNEK--K--ELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~--~--~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+.++||.|.||.||+|.....  |  -.||||..+.+  ....+.+..|..+++.+.|++|     ++++|++.+ ...
T Consensus       392 tl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphI-----ikLIGv~~e-~P~  465 (974)
T KOG4257|consen  392 TLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHI-----IKLIGVCVE-QPM  465 (974)
T ss_pred             cHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcch-----hheeeeeec-cce
Confidence            3457899999999999986432  2  35899998753  3557889999999999999888     999999875 679


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |||||++ -|.|..+++.+. ..++......+++||+.||.|||+..+|||||-..|||+.+..                
T Consensus       466 WivmEL~~~GELr~yLq~nk-~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~----------------  528 (974)
T KOG4257|consen  466 WIVMELAPLGELREYLQQNK-DSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQ----------------  528 (974)
T ss_pred             eEEEecccchhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcc----------------
Confidence            9999999 999999999776 4799999999999999999999999999999999999996644                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCCccc--cc--CCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV--VS--TRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHE  322 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~--~g--t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~  322 (433)
                                 .+||+|||+++..++..-+.  .|  ...|||||.+.-..++.+||||-|||.+||++. |..||.+..
T Consensus       529 -----------CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvk  597 (974)
T KOG4257|consen  529 -----------CVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVK  597 (974)
T ss_pred             -----------eeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcccccc
Confidence                       57888888888776554321  22  457999999999999999999999999999987 999999887


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      +.+.+..+.                       .|.++..                          ++.+++.+..|+.+|
T Consensus       598 NsDVI~~iE-----------------------nGeRlP~--------------------------P~nCPp~LYslmskc  628 (974)
T KOG4257|consen  598 NSDVIGHIE-----------------------NGERLPC--------------------------PPNCPPALYSLMSKC  628 (974)
T ss_pred             ccceEEEec-----------------------CCCCCCC--------------------------CCCCChHHHHHHHHH
Confidence            766544332                       2223222                          346688999999999


Q ss_pred             cccCCCCCCCHHHHh
Q 013941          403 LRYDPAERLKAREAL  417 (433)
Q Consensus       403 L~~dP~~R~ta~ell  417 (433)
                      |++||.+||+..|+.
T Consensus       629 WayeP~kRPrftei~  643 (974)
T KOG4257|consen  629 WAYEPSKRPRFTEIK  643 (974)
T ss_pred             hccCcccCCcHHHHH
Confidence            999999999987764

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-37  Score=298.79  Aligned_cols=244  Identities=23%  Similarity=0.333  Sum_probs=209.4

Q ss_pred             CeEEeccccccccEEEEEEEecCCC---cEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKK---ELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~---~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .-.|.+.||.|.||.|++|+.+..+   ..||||.++..  ++.+.+++.|+.|+-++.||||     +++.++......
T Consensus       630 ~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNI-----IrLEGVVTks~P  704 (996)
T KOG0196|consen  630 CVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNI-----IRLEGVVTKSKP  704 (996)
T ss_pred             heEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcE-----EEEEEEEecCce
Confidence            4578899999999999999987666   47999999853  5667889999999999999988     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ++||+||| +|+|..||+.+.+ .|+.-+...+++.|+.|++||-++|+|||||-..|||++++-               
T Consensus       705 vMIiTEyMENGsLDsFLR~~DG-qftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnL---------------  768 (996)
T KOG0196|consen  705 VMIITEYMENGSLDSFLRQNDG-QFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNL---------------  768 (996)
T ss_pred             eEEEhhhhhCCcHHHHHhhcCC-ceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccce---------------
Confidence            99999999 9999999998874 599999999999999999999999999999999999997654               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCC----ccccc--CCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVS--TRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQ  319 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~g--t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~  319 (433)
                                  .+|++|||+++..++..    ++..|  ...|.|||.+.-..++.+|||||+|++|||.++ |..||.
T Consensus       769 ------------vCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYW  836 (996)
T KOG0196|consen  769 ------------VCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW  836 (996)
T ss_pred             ------------EEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccc
Confidence                        45666667666554333    11222  357999999999999999999999999999876 999999


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ...+.+.+..|.+...-+|+                                                 ..++..+..|+
T Consensus       837 dmSNQdVIkaIe~gyRLPpP-------------------------------------------------mDCP~aL~qLM  867 (996)
T KOG0196|consen  837 DMSNQDVIKAIEQGYRLPPP-------------------------------------------------MDCPAALYQLM  867 (996)
T ss_pred             ccchHHHHHHHHhccCCCCC-------------------------------------------------CCCcHHHHHHH
Confidence            99999999888776544332                                                 34577899999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q 013941          400 QGLLRYDPAERLKAREALR  418 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~  418 (433)
                      ..||++|-.+||++.||++
T Consensus       868 ldCWqkdR~~RP~F~qiV~  886 (996)
T KOG0196|consen  868 LDCWQKDRNRRPKFAQIVS  886 (996)
T ss_pred             HHHHHHHhhcCCCHHHHHH
Confidence            9999999999999999875

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-35  Score=271.41  Aligned_cols=206  Identities=22%  Similarity=0.300  Sum_probs=160.7

Q ss_pred             CCCCCceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHH--HHHHhCCCCCc
Q 013941           76 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVL--QRLARHDIGGT  153 (433)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l--~~l~~~~i~~~  153 (433)
                      +.++...++.+...+..+-.+++.||+|.||+||+|.++  |+.||||++...++  ....+|.+|.  ..|+|+||   
T Consensus       195 SGSGSGlplLVQRTiarqI~L~e~IGkGRyGEVwrG~wr--Ge~VAVKiF~srdE--~SWfrEtEIYqTvmLRHENI---  267 (513)
T KOG2052|consen  195 SGSGSGLPLLVQRTIARQIVLQEIIGKGRFGEVWRGRWR--GEDVAVKIFSSRDE--RSWFRETEIYQTVMLRHENI---  267 (513)
T ss_pred             CCCCCCchhHhHHhhhheeEEEEEecCccccceeecccc--CCceEEEEecccch--hhhhhHHHHHHHHHhccchh---
Confidence            344455667777888889999999999999999999864  77899999976554  3455555555  45678887   


Q ss_pred             ceeEecceeccC----CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC--------CcEecCC
Q 013941          154 RCVQIRNWFDYR----NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL--------RLIHTDL  220 (433)
Q Consensus       154 ~~v~~~~~~~~~----~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~--------~ivHrDi  220 (433)
                        ..+++.-..+    .++|||++|- .|+|+|+|...   .++.+...+++..++.||+|||-.        .|.||||
T Consensus       268 --LgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r~---tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDl  342 (513)
T KOG2052|consen  268 --LGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNRN---TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDL  342 (513)
T ss_pred             --hhhhhccccCCCceEEEEEeeecccCCcHHHHHhhc---cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhcccc
Confidence              7777654433    3799999999 99999999985   699999999999999999999963        4999999


Q ss_pred             CCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCC----CC
Q 013941          221 KPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG----WN  296 (433)
Q Consensus       221 kp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~----~~  296 (433)
                      |..|||+..+|.+.|+|+|++-+...+.+                    ......+..+||..|||||++...-    +.
T Consensus       343 KSKNILVKkn~~C~IADLGLAv~h~~~t~--------------------~idi~~N~rVGTKRYMAPEvLdetin~~~Fe  402 (513)
T KOG2052|consen  343 KSKNILVKKNGTCCIADLGLAVRHDSDTD--------------------TIDIPPNPRVGTKRYMAPEVLDETINMKHFE  402 (513)
T ss_pred             ccccEEEccCCcEEEeeceeeEEecccCC--------------------cccCCCCCccceeeccChHHhhhhcChhhhh
Confidence            99999999888777777776544333221                    1112334569999999999997642    22


Q ss_pred             --ccchHHHHHHHHHHHHh
Q 013941          297 --YPCDLWSVGCILVELCS  313 (433)
Q Consensus       297 --~~~DiwSlG~il~el~~  313 (433)
                        ..+||||||.|+||++.
T Consensus       403 syk~ADIYafgLVlWEiar  421 (513)
T KOG2052|consen  403 SYKRADIYAFGLVLWEIAR  421 (513)
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence              46899999999999975

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-35  Score=278.66  Aligned_cols=196  Identities=26%  Similarity=0.478  Sum_probs=170.9

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHH---------HHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA---------AMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~---------~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      .|..++.||+|+||.|++|.++.+...|+||.+.+..-..+.         .-.|++||..++.+  .|+||++++++|+
T Consensus       562 ~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~--sH~NIlKlLdfFE  639 (772)
T KOG1152|consen  562 DYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKH--SHENILKLLDFFE  639 (772)
T ss_pred             cceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhc--Cccchhhhhheee
Confidence            499999999999999999999999999999999765432222         33499999999833  2344499999999


Q ss_pred             cCCeEEEEEccC--CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          164 YRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       164 ~~~~~~lv~e~~--~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      +++++||+||--  |.+|.+++..+.  .++|..+..|++|++.|+++||++||||||||-+||.++.+|          
T Consensus       640 ddd~yyl~te~hg~gIDLFd~IE~kp--~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g----------  707 (772)
T KOG1152|consen  640 DDDYYYLETEVHGEGIDLFDFIEFKP--RMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNG----------  707 (772)
T ss_pred             cCCeeEEEecCCCCCcchhhhhhccC--ccchHHHHHHHHHHHhccccccccCceecccccccEEEecCC----------
Confidence            999999999987  679999999876  899999999999999999999999999999999999997766          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCC-CccchHHHHHHHHHHHHhCCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                       -+||+|||.|...... -..++||..|.|||++.|..| +..-|||+||++||-++....||.
T Consensus       708 -----------------~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  708 -----------------FVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             -----------------eEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence                             5799999988766544 355799999999999999987 578899999999999999999985

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-36  Score=289.57  Aligned_cols=259  Identities=26%  Similarity=0.406  Sum_probs=213.0

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .++|+++..+|+|.||.||+|+++.+++..|+|+++... ........|+-+++..+|+||     +.+++.+-..+.++
T Consensus        14 ~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~ni-----vay~gsylr~dklw   88 (829)
T KOG0576|consen   14 QDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNI-----VAYFGSYLRRDKLW   88 (829)
T ss_pred             ccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcCh-----HHHHhhhhhhcCcE
Confidence            457999999999999999999999999999999998543 234556779999999999988     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++|||| ||+|.+..+-.+  .+++.++..+++..++||+|||++|=+|||||-.|||+++.|.                
T Consensus        89 icMEycgggslQdiy~~Tg--plselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gD----------------  150 (829)
T KOG0576|consen   89 ICMEYCGGGSLQDIYHVTG--PLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGD----------------  150 (829)
T ss_pred             EEEEecCCCcccceeeecc--cchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCc----------------
Confidence            999999 899999887665  8999999999999999999999999999999999999987774                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhh---CCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                 +|++|||.+.....   ....+.||++|||||+..   ...|...+|||++|++..|+-.-++|.-...
T Consensus       151 -----------vklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlh  219 (829)
T KOG0576|consen  151 -----------VKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLH  219 (829)
T ss_pred             -----------eeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccc
Confidence                       56666665543322   234469999999999874   3468999999999999999988888876655


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+.+..+......+|.                                             .+....+++.+.+|++.+
T Consensus       220 pmr~l~LmTkS~~qpp~---------------------------------------------lkDk~kws~~fh~fvK~a  254 (829)
T KOG0576|consen  220 PMRALFLMTKSGFQPPT---------------------------------------------LKDKTKWSEFFHNFVKGA  254 (829)
T ss_pred             hHHHHHHhhccCCCCCc---------------------------------------------ccCCccchHHHHHHHHHH
Confidence            55555555443333321                                             122245577899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          403 LRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      |.++|++|||++.+|.|||.+..+.+
T Consensus       255 ltknpKkRptaeklL~h~fvs~~l~~  280 (829)
T KOG0576|consen  255 LTKNPKKRPTAEKLLQHPFVSQTLSR  280 (829)
T ss_pred             hcCCCccCCChhhheeceeeccchhh
Confidence            99999999999999999999987543

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5e-35  Score=270.22  Aligned_cols=194  Identities=24%  Similarity=0.309  Sum_probs=148.4

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC----eE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN----HI  168 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~----~~  168 (433)
                      ..++.+.||+|.||.||+|+.  +++.||||++...+  .+.+..|-+|....   +..|+||+++++.-....    .+
T Consensus       211 pl~l~eli~~Grfg~V~KaqL--~~~~VAVKifp~~~--kqs~~~Ek~Iy~lp---~m~h~nIl~Fi~~ekr~t~~~~ey  283 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQL--DNRLVAVKIFPEQE--KQSFQNEKNIYSLP---GMKHENILQFIGAEKRGTADRMEY  283 (534)
T ss_pred             chhhHHHhhcCccceeehhhc--cCceeEEEecCHHH--HHHHHhHHHHHhcc---CccchhHHHhhchhccCCccccce
Confidence            467889999999999999974  56899999997544  35566666655432   334444599988766544    89


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---------CcEecCCCCCcEEEeeCCcccccCc
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL---------RLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---------~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                      +||++|. .|+|.++|..+   .+++....+++..|++||+|||+.         .|+|||||..|||+.+++.+.|+||
T Consensus       284 wLVt~fh~kGsL~dyL~~n---tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDF  360 (534)
T KOG3653|consen  284 WLVTEFHPKGSLCDYLKAN---TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADF  360 (534)
T ss_pred             eEEeeeccCCcHHHHHHhc---cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeecc
Confidence            9999999 99999999987   599999999999999999999973         5999999999999988876655555


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCC-CC-----ccchHHHHHHHHHHHH
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG-WN-----YPCDLWSVGCILVELC  312 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~-~~-----~~~DiwSlG~il~el~  312 (433)
                      |++.+......                      ......-+||..|||||++.+.. +.     .+.||||+|.+||||+
T Consensus       361 GLAl~~~p~~~----------------------~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~  418 (534)
T KOG3653|consen  361 GLALRLEPGKP----------------------QGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIA  418 (534)
T ss_pred             ceeEEecCCCC----------------------CcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            55433221110                      01111248999999999998752 22     4689999999999999


Q ss_pred             hCCCCC
Q 013941          313 SGEALF  318 (433)
Q Consensus       313 ~g~~pf  318 (433)
                      +...-+
T Consensus       419 SRC~~~  424 (534)
T KOG3653|consen  419 SRCTDA  424 (534)
T ss_pred             hhcccc
Confidence            875544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.9e-34  Score=312.54  Aligned_cols=187  Identities=18%  Similarity=0.277  Sum_probs=154.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ..|...+.||+|+||.||+|++..+++.||+|.+.....   ....|++++++++|+||     +++++++.+.+..|+|
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~l~~l~HpnI-----v~~~~~~~~~~~~~lv  761 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNS---IPSSEIADMGKLQHPNI-----VKLIGLCRSEKGAYLI  761 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcc---ccHHHHHHHhhCCCCCc-----ceEEEEEEcCCCCEEE
Confidence            346677889999999999999989999999999864332   22346888999988887     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH---ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |||+ +++|.+++.     .+++..+..++.||+.||+|||   +.+|+||||||+||+++.++..              
T Consensus       762 ~Ey~~~g~L~~~l~-----~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~--------------  822 (968)
T PLN00113        762 HEYIEGKNLSEVLR-----NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEP--------------  822 (968)
T ss_pred             EeCCCCCcHHHHHh-----cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCce--------------
Confidence            9999 999999995     3789999999999999999999   6699999999999999765532              


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                   ++. ||.+..... .....||..|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus       823 -------------~~~-~~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~  880 (968)
T PLN00113        823 -------------HLR-LSLPGLLCT-DTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADA  880 (968)
T ss_pred             -------------EEE-ecccccccc-CCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCc
Confidence                         222 333222111 1123678999999999998999999999999999999999999953

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.9e-34  Score=304.64  Aligned_cols=200  Identities=20%  Similarity=0.216  Sum_probs=155.3

Q ss_pred             CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          166 NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       166 ~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++++||+++++|.+++.... ..+++..++.++.||+.||+|||++|||||||||+||||+..|.++++|||.+....
T Consensus        53 ~~~~~~~e~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~  131 (793)
T PLN00181         53 DSIVRALECEDVSLRQWLDNPD-RSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSG  131 (793)
T ss_pred             chhhhhhccCCccHHHHHhccc-ccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCccc
Confidence            4678889999899999997542 469999999999999999999999999999999999999999999999999876543


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC-------------------CcccccCCcccchhhhhCCCCCccchHHHHHH
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD-------------------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGC  306 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-------------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~  306 (433)
                      .        +....+|++|||+++.....                   ....+||+.|||||++.+..++.++|||||||
T Consensus       132 ~--------~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGv  203 (793)
T PLN00181        132 S--------DEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGV  203 (793)
T ss_pred             c--------cccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHH
Confidence            2        23457899999998642210                   01136899999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhh
Q 013941          307 ILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ  386 (433)
Q Consensus       307 il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (433)
                      +||||++|..|+....  .....+...  ..|...                                             
T Consensus       204 iL~ELl~~~~~~~~~~--~~~~~~~~~--~~~~~~---------------------------------------------  234 (793)
T PLN00181        204 LLFELFCPVSSREEKS--RTMSSLRHR--VLPPQI---------------------------------------------  234 (793)
T ss_pred             HHHHHhhCCCchhhHH--HHHHHHHHh--hcChhh---------------------------------------------
Confidence            9999999988875321  111111110  001000                                             


Q ss_pred             ccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       387 ~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                        ........+++.+||+.||.+|||+.|+++||||.+.
T Consensus       235 --~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~~  271 (793)
T PLN00181        235 --LLNWPKEASFCLWLLHPEPSCRPSMSELLQSEFINEP  271 (793)
T ss_pred             --hhcCHHHHHHHHHhCCCChhhCcChHHHhhchhhhhh
Confidence              0012345688999999999999999999999999863

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-34  Score=246.49  Aligned_cols=200  Identities=26%  Similarity=0.354  Sum_probs=168.2

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecc-eeccCCe
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRN-WFDYRNH  167 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~-~~~~~~~  167 (433)
                      .+.+.|.|.+.||+|.||.+.+|+++.++..+++|.+.+......++.+|...--.|.+|    .||+.-++ .|+..+.
T Consensus        21 ~l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H----~hIi~tY~vaFqt~d~   96 (378)
T KOG1345|consen   21 DLEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPH----QHIIDTYEVAFQTSDA   96 (378)
T ss_pred             chhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccc----hhhhHHHHHHhhcCce
Confidence            345789999999999999999999999999999999988777778888888665555533    33365554 4778889


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ++++|||+ -|+|..-+...   .+.|...+.++.|+++||.|+|++++||||||.+||||-..                
T Consensus        97 YvF~qE~aP~gdL~snv~~~---GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~----------------  157 (378)
T KOG1345|consen   97 YVFVQEFAPRGDLRSNVEAA---GIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDA----------------  157 (378)
T ss_pred             EEEeeccCccchhhhhcCcc---cccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecC----------------
Confidence            99999999 99999888765   48899999999999999999999999999999999999653                


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC-----CCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-----GWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                               +..++||||||.++..+..-...-.+..|.+||+....     ...+.+|||.||+++|.++||.+||+.
T Consensus       158 ---------df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQk  227 (378)
T KOG1345|consen  158 ---------DFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQK  227 (378)
T ss_pred             ---------CccEEEeeecccccccCceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchh
Confidence                     23479999999998776665556667789999987643     246889999999999999999999974

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-33  Score=273.38  Aligned_cols=242  Identities=21%  Similarity=0.274  Sum_probs=192.3

Q ss_pred             eEEeccccccccEEEEEEEecCCCc----EEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKE----LVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .+..++||+|+||+||+|.+-..|+    +||+|++....  +...++..|+.++.++.|+|+     +++++++.... 
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl-----~RLLgvc~~s~-  771 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNL-----LRLLGVCMLST-  771 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchH-----HHHhhhcccch-
Confidence            4456799999999999998766554    68999886533  446788899999999999888     99999998765 


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +.||++|+ .|+|.++++.+. ..+-......|..||++|+.|||++++|||||-..|||+.+..++             
T Consensus       772 ~qlvtq~mP~G~LlDyvr~hr-~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hv-------------  837 (1177)
T KOG1025|consen  772 LQLVTQLMPLGCLLDYVREHR-DNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHV-------------  837 (1177)
T ss_pred             HHHHHHhcccchHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeE-------------
Confidence            88999999 999999998765 478889999999999999999999999999999999999876655             


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcc---c--ccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY---V--VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQT  320 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~---~--~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~  320 (433)
                                    |+.|||+++........   .  .-.+.|||-|.+....|+.++|||||||++||++| |..|+.+
T Consensus       838 --------------kitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~g  903 (1177)
T KOG1025|consen  838 --------------KITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDG  903 (1177)
T ss_pred             --------------EEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCC
Confidence                          55555555443322211   1  12457999999999999999999999999999998 9999988


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ....++-..+                       +.+.++                          ..++..+.++.-++.
T Consensus       904 i~~~eI~dll-----------------------e~geRL--------------------------sqPpiCtiDVy~~mv  934 (1177)
T KOG1025|consen  904 IPAEEIPDLL-----------------------EKGERL--------------------------SQPPICTIDVYMVMV  934 (1177)
T ss_pred             CCHHHhhHHH-----------------------hccccC--------------------------CCCCCccHHHHHHHH
Confidence            7655433222                       222221                          223455778999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q 013941          401 GLLRYDPAERLKAREALR  418 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~  418 (433)
                      +||..|+..||+++++.+
T Consensus       935 kCwmid~~~rp~fkel~~  952 (1177)
T KOG1025|consen  935 KCWMIDADSRPTFKELAE  952 (1177)
T ss_pred             HHhccCcccCccHHHHHH
Confidence            999999999999998753

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-32  Score=275.17  Aligned_cols=244  Identities=24%  Similarity=0.429  Sum_probs=191.1

Q ss_pred             CeEEeccccccccEEEEEEEec---C----CCcEEEEEEeccch--hhHHHHHHHHHHHHHHH-hCCCCCcceeEeccee
Q 013941           93 RYRILSKMGEGTFGQVVECFDN---E----KKELVAIKIVRSIN--KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWF  162 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~---~----~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~  162 (433)
                      +..+.+.||+|.||.|++|.-.   .    ....||||.++...  ...+.+..|+++++.+. |+|+     +.+.+.+
T Consensus       297 ~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~ni-----v~llG~~  371 (609)
T KOG0200|consen  297 NLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNI-----VNLLGAC  371 (609)
T ss_pred             hccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcch-----hhheeee
Confidence            3456679999999999999732   1    14579999987432  45677889999999997 4454     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcC------------C--CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEE
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNS------------Y--RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILL  227 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~------------~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli  227 (433)
                      ...+.+++|+||+ .|+|.++++.+.            .  ..++..+...++.||+.|++||+++++|||||-..|||+
T Consensus       372 t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi  451 (609)
T KOG0200|consen  372 TQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLI  451 (609)
T ss_pred             ccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEe
Confidence            9999999999999 999999998765            0  138899999999999999999999999999999999999


Q ss_pred             eeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCccc----ccC--CcccchhhhhCCCCCccchH
Q 013941          228 VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV----VST--RHYRAPEVILGLGWNYPCDL  301 (433)
Q Consensus       228 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~----~gt--~~y~aPE~~~~~~~~~~~Di  301 (433)
                      +.+.                           .+||+|||+|+.......+.    .|+  ..|||||.+....|+.++||
T Consensus       452 ~~~~---------------------------~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDV  504 (609)
T KOG0200|consen  452 TKNK---------------------------VIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDV  504 (609)
T ss_pred             cCCC---------------------------EEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchh
Confidence            7654                           46777777776433322221    222  34999999999999999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCC-hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcC
Q 013941          302 WSVGCILVELCS-GEALFQTHE-NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR  379 (433)
Q Consensus       302 wSlG~il~el~~-g~~pf~~~~-~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (433)
                      ||||++|||+++ |..||.+.. ..+....                       .+.|.+..                   
T Consensus       505 WSfGI~L~EifsLG~~PYp~~~~~~~l~~~-----------------------l~~G~r~~-------------------  542 (609)
T KOG0200|consen  505 WSFGILLWEIFTLGGTPYPGIPPTEELLEF-----------------------LKEGNRME-------------------  542 (609)
T ss_pred             hHHHHHHHHHhhCCCCCCCCCCcHHHHHHH-----------------------HhcCCCCC-------------------
Confidence            999999999999 899998744 3332221                       22222222                   


Q ss_pred             chhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHh
Q 013941          380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREAL  417 (433)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell  417 (433)
                             .+..++.++.++++.||+.+|++||+..++.
T Consensus       543 -------~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~  573 (609)
T KOG0200|consen  543 -------QPEHCSDEIYDLMKSCWNADPEDRPTFSECV  573 (609)
T ss_pred             -------CCCCCCHHHHHHHHHHhCCCcccCCCHHHHH
Confidence                   2334577899999999999999999998876

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.97  E-value=1.5e-30  Score=230.83  Aligned_cols=207  Identities=39%  Similarity=0.625  Sum_probs=178.8

Q ss_pred             ccccccEEEEEEEecCCCcEEEEEEeccchh--hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-C
Q 013941          100 MGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-G  176 (433)
Q Consensus       100 lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~  176 (433)
                      ||+|++|.||++.+..+++.+++|++.....  ..+.+.+|+..++.+.|+++     +++++++......+++||++ +
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i-----~~~~~~~~~~~~~~~~~e~~~~   75 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNI-----VKLYGVFEDENHLYLVMEYCEG   75 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCe-----eeEeeeeecCCeEEEEEecCCC
Confidence            6899999999999988899999999976544  25678899999999988666     99999999989999999999 6


Q ss_pred             CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee-CCcccccCccccccCCCCCCcccCCC
Q 013941          177 PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS-AEYVKVPDYKFLSRSSKDGSYFKNLP  255 (433)
Q Consensus       177 ~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~-~~~~~l~d~~~~~~~~~~~~~~~~~~  255 (433)
                      ++|.+++.... ..++...+..++.+++.+|++||++|++|+||+|.||+++. ++                        
T Consensus        76 ~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~------------------------  130 (215)
T cd00180          76 GSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNG------------------------  130 (215)
T ss_pred             CcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCC------------------------
Confidence            99999998652 35899999999999999999999999999999999999975 33                        


Q ss_pred             CCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHH
Q 013941          256 KSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMME  331 (433)
Q Consensus       256 ~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~  331 (433)
                         .++|+|||.+......   .....+...|++||.+... .++.++|+|+||+++++|             .      
T Consensus       131 ---~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-------------~------  188 (215)
T cd00180         131 ---KVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-------------P------  188 (215)
T ss_pred             ---cEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-------------H------
Confidence               5777777777654443   2335678899999999887 788999999999999998             0      


Q ss_pred             HHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCC
Q 013941          332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL  411 (433)
Q Consensus       332 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~  411 (433)
                                                                                    .+.+++.+||+.||++||
T Consensus       189 --------------------------------------------------------------~~~~~l~~~l~~~p~~R~  206 (215)
T cd00180         189 --------------------------------------------------------------ELKDLIRKMLQKDPEKRP  206 (215)
T ss_pred             --------------------------------------------------------------HHHHHHHHHhhCCcccCc
Confidence                                                                          567999999999999999


Q ss_pred             CHHHHhcCC
Q 013941          412 KAREALRHP  420 (433)
Q Consensus       412 ta~ell~hp  420 (433)
                      ++.++++|+
T Consensus       207 ~~~~l~~~~  215 (215)
T cd00180         207 SAKEILEHL  215 (215)
T ss_pred             CHHHHhhCC
Confidence            999999875

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.97  E-value=5.8e-30  Score=230.11  Aligned_cols=193  Identities=39%  Similarity=0.635  Sum_probs=166.2

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccchh--hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      |.+.+.||+|++|.||++.+..+++.+|+|.+.....  ..+.+.+|++.++++.|+++     +++++++......+++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i-----~~~~~~~~~~~~~~~v   75 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNI-----VKLYGVFEDPEPLYLV   75 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCh-----hhheeeeecCCceEEE
Confidence            5678999999999999999988899999999975432  45678889999999987776     9999999888999999


Q ss_pred             EccC-CCCHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          172 FEKL-GPSLYDFLRKNSYRS-FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~-l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +|++ +++|.+++....  . +++..+..++.+++.+|.+||+++++|+||+|+||+++.++                  
T Consensus        76 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~------------------  135 (225)
T smart00221       76 MEYCEGGDLFDYLRKKG--GKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDG------------------  135 (225)
T ss_pred             EeccCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC------------------
Confidence            9999 779999998754  3 88999999999999999999999999999999999996544                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhh-hCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVI-LGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~-~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                               .++|+|||.+.......    ....++..|++||.+ ....++.++|+|+||+++++|++|+.||..
T Consensus       136 ---------~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      136 ---------LVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             ---------CEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence                     56777777766544332    345778899999998 666788899999999999999999999976

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.97  E-value=6.4e-30  Score=231.12  Aligned_cols=253  Identities=17%  Similarity=0.205  Sum_probs=186.8

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCC-----CcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEK-----KELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~-----~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      -..|++....+-+|.||.||.|.+++.     .+.|-+|.++...  .....+..|.-.+..+.|+|+     ..+.++.
T Consensus       282 ~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nl-----l~V~~V~  356 (563)
T KOG1024|consen  282 QRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNL-----LSVLGVS  356 (563)
T ss_pred             hhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCc-----cceeEEE
Confidence            346789999999999999999965432     3446667665322  233445566666666777766     7776665


Q ss_pred             c-cCCeEEEEEccC-CCCHHHHHHhc------CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccc
Q 013941          163 D-YRNHICIVFEKL-GPSLYDFLRKN------SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       163 ~-~~~~~~lv~e~~-~~~L~~~l~~~------~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~  234 (433)
                      . +....++++.++ -|+|..++...      .-+.++..+...++.|++.|++|||+.||||.||-..|++|++.-.+|
T Consensus       357 ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVk  436 (563)
T KOG1024|consen  357 IEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVK  436 (563)
T ss_pred             eeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEE
Confidence            4 456778889999 78999999822      224577788889999999999999999999999999999998766655


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-  313 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-  313 (433)
                      ++|-.+++...+.                |+..-...      --....|||||.+.+..|+.++|+|||||+||||+| 
T Consensus       437 ltDsaLSRDLFP~----------------DYhcLGDn------EnRPvkWMslEal~n~~yssasDvWsfGVllWELmtl  494 (563)
T KOG1024|consen  437 LTDSALSRDLFPG----------------DYHCLGDN------ENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTL  494 (563)
T ss_pred             eccchhccccCcc----------------cccccCCC------CCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhc
Confidence            5555544433222                11111000      012356999999999999999999999999999998 


Q ss_pred             CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      |+.|+..-+..+....+..                       |.++                          ..+-.+++
T Consensus       495 g~~PyaeIDPfEm~~ylkd-----------------------GyRl--------------------------aQP~NCPD  525 (563)
T KOG1024|consen  495 GKLPYAEIDPFEMEHYLKD-----------------------GYRL--------------------------AQPFNCPD  525 (563)
T ss_pred             CCCCccccCHHHHHHHHhc-----------------------ccee--------------------------cCCCCCcH
Confidence            9999998888776655543                       2111                          22345678


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      ++..++.-||..+|++||+.+|+..
T Consensus       526 eLf~vMacCWallpeeRPsf~Qlv~  550 (563)
T KOG1024|consen  526 ELFTVMACCWALLPEERPSFSQLVI  550 (563)
T ss_pred             HHHHHHHHHHhcCcccCCCHHHHHH
Confidence            9999999999999999999999864

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.96  E-value=3.3e-29  Score=216.93  Aligned_cols=167  Identities=23%  Similarity=0.277  Sum_probs=123.8

Q ss_pred             CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCC
Q 013941          177 PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK  256 (433)
Q Consensus       177 ~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~  256 (433)
                      |+|.+++...+ ..+++..++.++.||+.||+|||+++      ||+|||++.++.                        
T Consensus         1 GsL~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~------------------------   49 (176)
T smart00750        1 VSLADILEVRG-RPLNEEEIWAVCLQCLRALRELHRQA------KSGNILLTWDGL------------------------   49 (176)
T ss_pred             CcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcCccc------------------------
Confidence            68999998643 36999999999999999999999999      999999976654                        


Q ss_pred             CCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhc
Q 013941          257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE-HLAMMERVLG  335 (433)
Q Consensus       257 ~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~  335 (433)
                         +++  ||++.......  ..||+.|||||++.+..++.++|||||||++|||++|..||....... .+..+.....
T Consensus        50 ---~~~--fG~~~~~~~~~--~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~  122 (176)
T smart00750       50 ---LKL--DGSVAFKTPEQ--SRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMP  122 (176)
T ss_pred             ---eee--ccceEeecccc--CCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhc
Confidence               444  66655433322  268999999999999999999999999999999999999997544321 1222211110


Q ss_pred             CCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch--HHHHHHHHHhcccCCCCCCCH
Q 013941          336 PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA--GDLIDLLQGLLRYDPAERLKA  413 (433)
Q Consensus       336 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~li~~~L~~dP~~R~ta  413 (433)
                      ...                       +...                    ......+  ..+.++|.+||..||++|||+
T Consensus       123 ~~~-----------------------~~~~--------------------~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~  159 (176)
T smart00750      123 ADD-----------------------PRDR--------------------SNLESVSAARSFADFMRVCASRLPQRREAA  159 (176)
T ss_pred             cCC-----------------------cccc--------------------ccHHHHHhhhhHHHHHHHHHhcccccccCH
Confidence            000                       0000                    0000112  268999999999999999999


Q ss_pred             HHHhcCCCCCC
Q 013941          414 REALRHPFFTR  424 (433)
Q Consensus       414 ~ell~hp~f~~  424 (433)
                      .|+++|+|+..
T Consensus       160 ~~ll~~~~~~~  170 (176)
T smart00750      160 NHYLAHCRALF  170 (176)
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-27  Score=226.75  Aligned_cols=210  Identities=28%  Similarity=0.360  Sum_probs=172.1

Q ss_pred             CeEEeccccccccEEEEEEEecCCC-cEEEEEEeccchhh-HHHHHHHHHHHHHHHhCCCCCcceeEeccee-ccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKK-ELVAIKIVRSINKY-REAAMIEIDVLQRLARHDIGGTRCVQIRNWF-DYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~-~~vavK~~~~~~~~-~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~-~~~~~~~  169 (433)
                      +|.+.++||+|+||.||+|.+..++ ..+|+|+....... ...+..|+.++..+.. .....++..+++.. ......|
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~-~~~~~~~~~~~~~G~~~~~~~~   97 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEK-KNGPSHFPKLLDHGRSTEDFNF   97 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhh-hcCCCCCCEEEEeccCCCceeE
Confidence            7999999999999999999987775 67899987654322 2267789999999985 22334568888888 5788999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||+.+|.+|.++......+.++..++..++.|++.+|++||+.|++||||||+|+++...+                  
T Consensus        98 iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~------------------  159 (322)
T KOG1164|consen   98 IVMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSS------------------  159 (322)
T ss_pred             EEEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCC------------------
Confidence            99999999999998766667899999999999999999999999999999999999996532                  


Q ss_pred             cccCCCCCCCeeeecCCCCc--cc----c-----CC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          250 YFKNLPKSSAIKLIDFGSTT--FE----H-----QD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~--~~----~-----~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                          ......+.|.|||+++  ..    .     ..  .....||..|+++.+..+...+.+.|+||++.++.+++.|..
T Consensus       160 ----~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~L  235 (322)
T KOG1164|consen  160 ----RSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSL  235 (322)
T ss_pred             ----CcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCC
Confidence                0122468889999887  21    0     00  122469999999999999999999999999999999999999


Q ss_pred             CCCCCChHH
Q 013941          317 LFQTHENLE  325 (433)
Q Consensus       317 pf~~~~~~~  325 (433)
                      ||.+.....
T Consensus       236 PW~~~~~~~  244 (322)
T KOG1164|consen  236 PWEALEMTD  244 (322)
T ss_pred             CCccccccc
Confidence            997765433

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-28  Score=215.99  Aligned_cols=204  Identities=25%  Similarity=0.345  Sum_probs=174.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      -.|+|.++||+|+||+++.|.+..+++.||||.-.... ...++..|....+.|...    +.|..++-+...+.+-.||
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS-~APQLrdEYr~YKlL~g~----~GIP~vYYFGqeG~~NiLV  102 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKS-EAPQLRDEYRTYKLLGGT----EGIPQVYYFGQEGKYNILV  102 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccC-CcchHHHHHHHHHHHcCC----CCCCceeeeccccchhhhh
Confidence            46999999999999999999999999999999865432 234577788888888732    3446777777888899999


Q ss_pred             EccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          172 FEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       172 ~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      +|++|.+|.|+..-.+ +.|+..++..++.||+.-++|+|++.+|.|||||+|+||...+                    
T Consensus       103 idLLGPSLEDLFD~Cg-R~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~--------------------  161 (449)
T KOG1165|consen  103 IDLLGPSLEDLFDLCG-RRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPG--------------------  161 (449)
T ss_pred             hhhhCcCHHHHHHHhc-CcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCC--------------------
Confidence            9999999999988665 6899999999999999999999999999999999999998765                    


Q ss_pred             cCCCCCCCeeeecCCCCccccCCC----------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQDH----------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~~----------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                        ..+...+.++|||+|+...+..          ....||..||+-....|...+.+-|+-|||-+++.++-|..||.+-
T Consensus       162 --~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGL  239 (449)
T KOG1165|consen  162 --TKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL  239 (449)
T ss_pred             --CCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccc
Confidence              2455679999999998654432          3368999999999999999999999999999999999999999875


Q ss_pred             Ch
Q 013941          322 EN  323 (433)
Q Consensus       322 ~~  323 (433)
                      ..
T Consensus       240 KA  241 (449)
T KOG1165|consen  240 KA  241 (449)
T ss_pred             cC
Confidence            43

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.96  E-value=9.2e-29  Score=210.33  Aligned_cols=214  Identities=26%  Similarity=0.382  Sum_probs=175.2

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ..++|.++++||+|+||.+|+|....+|+.||||+-++... ...+..|..+...|++.    ..+..+.-+..+.++-.
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~-hpqL~yEskvY~iL~~g----~GiP~i~~y~~e~~ynv   87 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAK-HPQLLYESKVYRILQGG----VGIPHIRHYGTEKDYNV   87 (341)
T ss_pred             eccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCC-CcchhHHHHHHHHhccC----CCCchhhhhccccccce
Confidence            35789999999999999999999999999999998765333 34567789999888753    22255666677888899


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||+++|.+|.+++.-.. +.++..++.-++-|++.-++|+|.+++|||||||+|+|+.-+.+                 
T Consensus        88 lVMdLLGPsLEdLfnfC~-R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh-----------------  149 (341)
T KOG1163|consen   88 LVMDLLGPSLEDLFNFCS-RRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRH-----------------  149 (341)
T ss_pred             eeeeccCccHHHHHHHHh-hhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccc-----------------
Confidence            999999999999987544 57999999999999999999999999999999999999965442                 


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC----------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH----------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~----------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                             ...+.|+|||+|+...+..          ....||..|.+--...+...+...|+=|+|.+|..+..|..||+
T Consensus       150 -------~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQ  222 (341)
T KOG1163|consen  150 -------CNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQ  222 (341)
T ss_pred             -------cceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCccc
Confidence                   3468999999997543322          33589999999888888788899999999999999999999999


Q ss_pred             CCChHH---HHHHHHHH
Q 013941          320 THENLE---HLAMMERV  333 (433)
Q Consensus       320 ~~~~~~---~~~~i~~~  333 (433)
                      +-....   ..+.|.+.
T Consensus       223 glka~tk~QKyEkI~Ek  239 (341)
T KOG1163|consen  223 GLKAATKKQKYEKISEK  239 (341)
T ss_pred             ccchhhHHHHHHHHHHh
Confidence            865433   34444443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.2e-28  Score=245.99  Aligned_cols=259  Identities=20%  Similarity=0.305  Sum_probs=185.5

Q ss_pred             CCe-EEeccccccccEEEEEEEecCCCcEEEEEEec----cchhh---HHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           92 PRY-RILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKY---REAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y-~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~----~~~~~---~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      +.| .....+|.|++|.|+.+......+.++.|.++    .....   ...+..|+-+-..+.|+++     +.....+.
T Consensus       317 ~~y~~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~-----~e~l~~~~  391 (601)
T KOG0590|consen  317 EKYGKPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNI-----IETLDIVQ  391 (601)
T ss_pred             cccCCccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCch-----hhhHHHHh
Confidence            345 45678999999989888877777666666554    21111   1114446666667777766     66666666


Q ss_pred             cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          164 YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       164 ~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      +.....-+||||.++|..++....  .+....+..++.||+.||+|||+.||.|||||++|++++..|.           
T Consensus       392 ~~~~~~~~mE~~~~Dlf~~~~~~~--~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~-----------  458 (601)
T KOG0590|consen  392 EIDGILQSMEYCPYDLFSLVMSNG--KLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGI-----------  458 (601)
T ss_pred             hcccchhhhhcccHHHHHHHhccc--ccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCc-----------
Confidence            555555559999339999998763  6889999999999999999999999999999999999987774           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC-------CcccccCCcccchhhhhCCCCC-ccchHHHHHHHHHHHHhCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-------HSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~-~~~DiwSlG~il~el~~g~  315 (433)
                                      +||+|||.+......       ....+|+..|+|||++.+..|+ ..+||||.|++++.|.+|+
T Consensus       459 ----------------lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~  522 (601)
T KOG0590|consen  459 ----------------LKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGR  522 (601)
T ss_pred             ----------------eEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCC
Confidence                            566666655432211       1235899999999999999987 5689999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||......+...  ..                          ..+...........             .....++...
T Consensus       523 ~~Wk~a~~~~~~~--~~--------------------------~~~~~~~~~~~~~~-------------~~~~~lp~~~  561 (601)
T KOG0590|consen  523 FPWKVAKKSDNSF--KT--------------------------NNYSDQRNIFEGPN-------------RLLSLLPRET  561 (601)
T ss_pred             Cccccccccccch--hh--------------------------hccccccccccChH-------------HHHHhchhhH
Confidence            9996544322110  00                          00000000000111             1122346688


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +.+|.+||++||.+|.|+++|++.+||+..
T Consensus       562 ~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i  591 (601)
T KOG0590|consen  562 RIIIYRMLQLDPTKRITIEQILNDEWIRSI  591 (601)
T ss_pred             HHHHHHHccCChhheecHHHHhhChHhhhc
Confidence            999999999999999999999999999974

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.94  E-value=5e-27  Score=236.47  Aligned_cols=251  Identities=22%  Similarity=0.327  Sum_probs=182.6

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHH---HHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAM---IEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~---~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .|...+.||++.|=.|.+|++.+ |. |+||++-+..  -....+.   +|++ ...+++     |||+.+..+...+..
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~e-G~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~-----pn~lPfqk~~~t~kA   95 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDRE-GL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKA-----PNCLPFQKVLVTDKA   95 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCC-ce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcC-----CcccchHHHHHhhHH
Confidence            58889999999999999998654 44 9999986433  1222333   3443 333444     455888888888889


Q ss_pred             EEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          168 ICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       168 ~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      .|||-+|...+|+|.+..+.  -+..-+.+.|+.||+.||..+|..||+|||||.+||||++-+.+.|+||.-.+.....
T Consensus        96 AylvRqyvkhnLyDRlSTRP--FL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLP  173 (1431)
T KOG1240|consen   96 AYLVRQYVKHNLYDRLSTRP--FLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLP  173 (1431)
T ss_pred             HHHHHHHHhhhhhhhhccch--HHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCCccCC
Confidence            99999999889999998775  5778888999999999999999999999999999999999999999999876655443


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC----------C-CCccchHHHHHHHHHHHHh-CC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL----------G-WNYPCDLWSVGCILVELCS-GE  315 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~----------~-~~~~~DiwSlG~il~el~~-g~  315 (433)
                      .+           --+||++-.......      ..|.|||.+...          . .+++.||||+||+++||++ |+
T Consensus       174 eD-----------NPadf~fFFDTSrRR------tCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~  236 (1431)
T KOG1240|consen  174 ED-----------NPADFTFFFDTSRRR------TCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGR  236 (1431)
T ss_pred             CC-----------CcccceEEEecCCce------eeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCC
Confidence            32           124665433222222      359999988641          2 5788999999999999998 79


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      +||.-    .++-...+.-...                                           ++..++..+  +..+
T Consensus       237 PlF~L----SQL~aYr~~~~~~-------------------------------------------~e~~Le~Ie--d~~~  267 (1431)
T KOG1240|consen  237 PLFTL----SQLLAYRSGNADD-------------------------------------------PEQLLEKIE--DVSL  267 (1431)
T ss_pred             CcccH----HHHHhHhccCccC-------------------------------------------HHHHHHhCc--CccH
Confidence            99941    1221111110000                                           111111111  3378


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ++||..|++.||++|.+|++.|+-
T Consensus       268 Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  268 RNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             HHHHHHHHccCchhccCHHHHHHh
Confidence            999999999999999999999974

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.94  E-value=3.3e-26  Score=216.45  Aligned_cols=158  Identities=20%  Similarity=0.171  Sum_probs=119.3

Q ss_pred             cCCCeEEeccccccccEEEEEEEecC-CCcEEEEEEeccc------hhhHHHHHHHHHHHHHHHhCCCCCccee-Eecce
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNE-KKELVAIKIVRSI------NKYREAAMIEIDVLQRLARHDIGGTRCV-QIRNW  161 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~~vavK~~~~~------~~~~~~~~~E~~~l~~l~~~~i~~~~~v-~~~~~  161 (433)
                      +.++|.+.+.||+|+||+||+|++.. +++.||||++...      ......+.+|+++|+++.|+++     + .++++
T Consensus        16 ~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~i-----v~~l~~~   90 (365)
T PRK09188         16 LSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGV-----VPQLLAT   90 (365)
T ss_pred             ccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCC-----CcEEEEc
Confidence            45679999999999999999999876 6788899986522      2234568899999999999887     4 34432


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCC-CCCcEEEeeCCcccccCcc
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDL-KPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDi-kp~NIli~~~~~~~l~d~~  239 (433)
                          +..|+||||+ |++|.. +..     ..   ...++.|++.||.|||++||+|||| ||+|||++.++.       
T Consensus        91 ----~~~~LVmE~~~G~~L~~-~~~-----~~---~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~-------  150 (365)
T PRK09188         91 ----GKDGLVRGWTEGVPLHL-ARP-----HG---DPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGE-------  150 (365)
T ss_pred             ----CCcEEEEEccCCCCHHH-hCc-----cc---hHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCC-------
Confidence                4579999999 888863 211     11   1467899999999999999999999 999999976554       


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----------CcccccCCcccchhhhhC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----------HSYVVSTRHYRAPEVILG  292 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----------~~~~~gt~~y~aPE~~~~  292 (433)
                                          ++|+|||+|......           -.+..++..|+|||.+..
T Consensus       151 --------------------ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~  194 (365)
T PRK09188        151 --------------------AAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTP  194 (365)
T ss_pred             --------------------EEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCCh
Confidence                                566666665532221           124578888999999864

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.4e-27  Score=229.38  Aligned_cols=236  Identities=25%  Similarity=0.389  Sum_probs=187.8

Q ss_pred             cccccccEEEEEEEe---cCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceeccCCeEEEE
Q 013941           99 KMGEGTFGQVVECFD---NEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        99 ~lg~G~~g~V~~~~~---~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      .+|+|.||.|++++.   ...+..+|+|+.++..   ........|..++..++ |+.+     ++++..++.+...+++
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~-----v~lhyafqt~~kl~l~   75 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFL-----VKLHYAFQTDGKLYLI   75 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCce-----eeeeeeeccccchhHh
Confidence            479999999998752   3457789999886432   11223445777777776 4444     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      +++. |++|...+.+..  .+.+...+.+...++.|++++|+.||+|||+|++||+++.+|+                  
T Consensus        76 ld~~rgg~lft~l~~~~--~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Gh------------------  135 (612)
T KOG0603|consen   76 LDFLRGGDLFTRLSKEV--MFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGH------------------  135 (612)
T ss_pred             hhhcccchhhhccccCC--chHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCc------------------
Confidence            9999 889988887654  7888999999999999999999999999999999999987775                  


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM  330 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i  330 (433)
                               +++.|||.++..-..... +||..|||||++.  ....++|.||||++++||++|..||.+    +....|
T Consensus       136 ---------i~~tdfglske~v~~~~~-cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~----~~~~~I  199 (612)
T KOG0603|consen  136 ---------IKLTDFGLSKEAVKEKIA-CGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG----DTMKRI  199 (612)
T ss_pred             ---------cccCCchhhhHhHhhhhc-ccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch----HHHHHH
Confidence                     455666665543333222 8999999999998  578899999999999999999999987    444555


Q ss_pred             HHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCC
Q 013941          331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER  410 (433)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  410 (433)
                      .+.....|.                                                  ..+..+++++..|+..+|.+|
T Consensus       200 l~~~~~~p~--------------------------------------------------~l~~~a~~~~~~l~~r~p~nr  229 (612)
T KOG0603|consen  200 LKAELEMPR--------------------------------------------------ELSAEARSLFRQLFKRNPENR  229 (612)
T ss_pred             hhhccCCch--------------------------------------------------hhhHHHHHHHHHHHhhCHHHH
Confidence            443333332                                                  336688999999999999999


Q ss_pred             CC-----HHHHhcCCCCCCC
Q 013941          411 LK-----AREALRHPFFTRD  425 (433)
Q Consensus       411 ~t-----a~ell~hp~f~~~  425 (433)
                      ..     +.|+++|+||+..
T Consensus       230 Lg~~~~~~~eik~h~f~~~i  249 (612)
T KOG0603|consen  230 LGAGPDGVDEIKQHEFFQSI  249 (612)
T ss_pred             hccCcchhHHHhccchheee
Confidence            85     5899999999875

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.93  E-value=2.3e-24  Score=204.67  Aligned_cols=256  Identities=33%  Similarity=0.496  Sum_probs=195.4

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHHHHHHHHhC-CCCCcceeEecceeccCCeE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEIDVLQRLARH-DIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~~~-~i~~~~~v~~~~~~~~~~~~  168 (433)
                      |.+.+.||.|+||.||++.+.   ..+++|.+.....    ....+.+|+.++..+.|+ ++     +.+.+.+......
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i-----~~~~~~~~~~~~~   73 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNI-----VKLYDFFQDEGSL   73 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcce-----eeEEEEEecCCEE
Confidence            788999999999999999987   7789999875332    356788899999999988 45     9999999877889


Q ss_pred             EEEEccC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSY-RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +++++++ ++++.+++..... ..+....+..++.|++.+|.|+|+.|++|||+||+||+++..+.              
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~--------------  139 (384)
T COG0515          74 YLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGR--------------  139 (384)
T ss_pred             EEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCC--------------
Confidence            9999999 8999977765431 16899999999999999999999999999999999999976541              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccC---------CCcccccCCcccchhhhhC---CCCCccchHHHHHHHHHHHHhC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQ---------DHSYVVSTRHYRAPEVILG---LGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~---------~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwSlG~il~el~~g  314 (433)
                                  .++++|||.+.....         ......||..|+|||.+.+   ..++...|+||+|++++++++|
T Consensus       140 ------------~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~  207 (384)
T COG0515         140 ------------VVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTG  207 (384)
T ss_pred             ------------eEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhC
Confidence                        467777776653322         1244689999999999988   5788999999999999999999


Q ss_pred             CCCCCCCCh----HHHHHHHHHHhcC-CChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccC
Q 013941          315 EALFQTHEN----LEHLAMMERVLGP-LPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD  389 (433)
Q Consensus       315 ~~pf~~~~~----~~~~~~i~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (433)
                      ..||.....    ......+.....+ ....                    ....                      ...
T Consensus       208 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~----------------------~~~  245 (384)
T COG0515         208 LPPFEGEKNSSATSQTLKIILELPTPSLASP--------------------LSPS----------------------NPE  245 (384)
T ss_pred             CCCCCCCCccccHHHHHHHHHhcCCcccccc--------------------cCcc----------------------ccc
Confidence            999877654    2222222221111 0000                    0000                      001


Q ss_pred             CchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          390 HSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       390 ~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .....+.+++.+++..+|..|.+..+...++|....
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  281 (384)
T COG0515         246 LISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHL  281 (384)
T ss_pred             hhhHHHHHHHHHHHhcCchhcCCHHHHhhchHhhCc
Confidence            113478899999999999999999998888766653

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.92  E-value=2.4e-25  Score=224.16  Aligned_cols=234  Identities=26%  Similarity=0.436  Sum_probs=167.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ..|..++.|..|+||.||+++++.+.+.+|+|+ ++.+.    +.+-  |+.....+                    +.|
T Consensus        83 ~df~~IklisngAygavylvrh~~trqrfa~ki-Nkq~l----ilRn--ilt~a~np--------------------fvv  135 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAMKI-NKQNL----ILRN--ILTFAGNP--------------------FVV  135 (1205)
T ss_pred             cccceeEeeccCCCCceeeeeccccccchhhcc-cccch----hhhc--cccccCCc--------------------cee
Confidence            469999999999999999999999999999965 22211    1110  11111111                    111


Q ss_pred             EccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          172 FEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       172 ~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                           |+=...+..-+  .++..        ++.+++|||+-||+|||+||+|.+|+.-|++|++|||+.+........ 
T Consensus       136 -----gDc~tllk~~g--~lPvd--------mvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~at-  199 (1205)
T KOG0606|consen  136 -----GDCATLLKNIG--PLPVD--------MVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLAT-  199 (1205)
T ss_pred             -----chhhhhcccCC--CCcch--------hhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccc-
Confidence                 23333333322  34332        378999999999999999999999999999999988886654333211 


Q ss_pred             cCCCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM  330 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i  330 (433)
                             ..|  .-++.....+ ....++||+.|+|||++..+.|+..+|+|++|+|+||.+.|..||.+++..+.+..+
T Consensus       200 -------nl~--eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~v  270 (1205)
T KOG0606|consen  200 -------NLK--EGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQV  270 (1205)
T ss_pred             -------hhh--hcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhh
Confidence                   000  0001111111 123369999999999999999999999999999999999999999999988887776


Q ss_pred             HHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCC
Q 013941          331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER  410 (433)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  410 (433)
                      ......                        |++.                       .....++++++|.++|+.+|..|
T Consensus       271 isd~i~------------------------wpE~-----------------------dea~p~Ea~dli~~LL~qnp~~R  303 (1205)
T KOG0606|consen  271 ISDDIE------------------------WPEE-----------------------DEALPPEAQDLIEQLLRQNPLCR  303 (1205)
T ss_pred             hhhhcc------------------------cccc-----------------------CcCCCHHHHHHHHHHHHhChHhh
Confidence            654333                        3332                       13446799999999999999999


Q ss_pred             C---CHHHHhcCCCCCC
Q 013941          411 L---KAREALRHPFFTR  424 (433)
Q Consensus       411 ~---ta~ell~hp~f~~  424 (433)
                      .   .+-+|.+|+||+.
T Consensus       304 lgt~ga~evk~h~ff~~  320 (1205)
T KOG0606|consen  304 LGTGGALEVKQHGFFQL  320 (1205)
T ss_pred             cccchhhhhhhccceee
Confidence            6   5789999999985

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.91  E-value=2.3e-24  Score=189.71  Aligned_cols=176  Identities=13%  Similarity=0.155  Sum_probs=127.0

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhH----HH------HHHHHHHHHHHHhCCCCCcceeE
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR----EA------AMIEIDVLQRLARHDIGGTRCVQ  157 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----~~------~~~E~~~l~~l~~~~i~~~~~v~  157 (433)
                      +.+.++|++++.||.|+||.||++.+  ++..+|+|+++......    ..      +.+|+..+.++.|+++..+....
T Consensus        27 ~~l~~~y~~~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~  104 (232)
T PRK10359         27 DFLSYNIKTIKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFY  104 (232)
T ss_pred             HHhhCceEEEEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEee
Confidence            45678999999999999999999765  46679999997432211    12      57899999999999984443221


Q ss_pred             e---cceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcc
Q 013941          158 I---RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYV  233 (433)
Q Consensus       158 ~---~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~  233 (433)
                      .   ...+...+..+|||||+ |.+|.++.      .+++.    ...+++.+|..||+.|++|||+||+||+++.+|  
T Consensus       105 ~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~------~~~~~----~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g--  172 (232)
T PRK10359        105 LLAERKTLRYAHTYIMLIEYIEGVELNDMP------EISED----VKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG--  172 (232)
T ss_pred             eecccccccccCCeEEEEEEECCccHHHhh------hccHH----HHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC--
Confidence            1   11122245689999999 78998773      23332    456999999999999999999999999996533  


Q ss_pred             cccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHH
Q 013941          234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       234 ~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~  312 (433)
                                                ++|+|||...........         -.++....|+.++||||||+++..+.
T Consensus       173 --------------------------i~liDfg~~~~~~e~~a~---------d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        173 --------------------------LRIIDLSGKRCTAQRKAK---------DRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             --------------------------EEEEECCCcccccchhhH---------HHHHHHhHhcccccccceeEeehHHH
Confidence                                      788888876544222111         11444556778999999999886553

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.91  E-value=5.7e-24  Score=192.81  Aligned_cols=202  Identities=21%  Similarity=0.252  Sum_probs=125.3

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHH----------hCCC-CCcceeE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLA----------RHDI-GGTRCVQ  157 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~----------~~~i-~~~~~v~  157 (433)
                      .+...+.||.|+++.||.+++..|++.+|+|++....    ...+.+.+|.-....+.          |-.+ ...-+++
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            3677889999999999999999999999999985322    22334444442222211          1011 0011122


Q ss_pred             ecc---eeccC---C-----eEEEEEccCCCCHHHHHHh---cCCC--CCCHHHHHHHHHHHHHHHHHHHhCCcEecCCC
Q 013941          158 IRN---WFDYR---N-----HICIVFEKLGPSLYDFLRK---NSYR--SFPIDLVRELGRQLLESVAFMHELRLIHTDLK  221 (433)
Q Consensus       158 ~~~---~~~~~---~-----~~~lv~e~~~~~L~~~l~~---~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDik  221 (433)
                      +.+   ++...   .     ..+++|+-+.++|.+++..   ....  .+.......+..|+++.+++||+.||||+|||
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~  172 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDIK  172 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-S
T ss_pred             EcCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEecccc
Confidence            211   11111   1     2478899888899888652   2211  12233345667999999999999999999999


Q ss_pred             CCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC--------
Q 013941          222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL--------  293 (433)
Q Consensus       222 p~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~--------  293 (433)
                      |+|++++.+|.                           ++|+||+.....+........+..|.+||.....        
T Consensus       173 ~~nfll~~~G~---------------------------v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~  225 (288)
T PF14531_consen  173 PENFLLDQDGG---------------------------VFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNA  225 (288)
T ss_dssp             GGGEEE-TTS----------------------------EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEE
T ss_pred             eeeEEEcCCCC---------------------------EEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccc
Confidence            99999987774                           5666665444333322222445679999987542        


Q ss_pred             CCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          294 GWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       294 ~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                      .++.+.|.|+||+++|.|++|..||...
T Consensus       226 ~~t~~~DaW~LG~~ly~lWC~~lPf~~~  253 (288)
T PF14531_consen  226 PYTFATDAWQLGITLYSLWCGRLPFGLS  253 (288)
T ss_dssp             EE-HHHHHHHHHHHHHHHHHSS-STCCC
T ss_pred             eeeeccCHHHHHHHHHHHHHccCCCCCC
Confidence            4788999999999999999999999754

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=5.4e-24  Score=193.50  Aligned_cols=188  Identities=22%  Similarity=0.303  Sum_probs=142.3

Q ss_pred             CCcceeEecceecc---------------------------CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHH
Q 013941          151 GGTRCVQIRNWFDY---------------------------RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL  203 (433)
Q Consensus       151 ~~~~~v~~~~~~~~---------------------------~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi  203 (433)
                      .|||||++...|.+                           ...+|+||..+..+|.+++..+   ..+....+-++.|+
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~tLr~yl~~~---~~s~r~~~~~laQl  350 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQTLREYLWTR---HRSYRTGRVILAQL  350 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchhhHHHHHhcC---CCchHHHHHHHHHH
Confidence            57888999888753                           2368999999999999999876   47888899999999


Q ss_pred             HHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC---------C
Q 013941          204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ---------D  274 (433)
Q Consensus       204 ~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---------~  274 (433)
                      ++|+.|||.+||.|||+|.+|||+.-+.                       |.-..+.|+|||++--.+.         .
T Consensus       351 LEav~hL~~hgvAhRDlKSDNiL~Eldd-----------------------D~~P~LVvaDFGCcLAd~~hGlqlpy~S~  407 (598)
T KOG4158|consen  351 LEAVTHLHKHGVAHRDLKSDNILLELDD-----------------------DEIPQLVVADFGCCLADDNHGLQLPYESD  407 (598)
T ss_pred             HHHHHHHHHccchhhcccccceEEEecC-----------------------CCCcEEEEcccceeeeccccccccccccc
Confidence            9999999999999999999999996543                       3445678999997643221         1


Q ss_pred             CcccccCCcccchhhhhCCC-----C-CccchHHHHHHHHHHHHhCCCCCCCCChHHH--HHHHHHHhcCCChhhHHhhh
Q 013941          275 HSYVVSTRHYRAPEVILGLG-----W-NYPCDLWSVGCILVELCSGEALFQTHENLEH--LAMMERVLGPLPHHMVIRAD  346 (433)
Q Consensus       275 ~~~~~gt~~y~aPE~~~~~~-----~-~~~~DiwSlG~il~el~~g~~pf~~~~~~~~--~~~i~~~~~~~p~~~~~~~~  346 (433)
                      .....|...-||||+....+     . -.++|.|+.|.+.||+++...||.+......  ...-+..+.           
T Consensus       408 ~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe~qLP-----------  476 (598)
T KOG4158|consen  408 EVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQESQLP-----------  476 (598)
T ss_pred             cccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhhhhCC-----------
Confidence            12246788899999987543     1 2589999999999999999999976322110  000001111           


Q ss_pred             hhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHH
Q 013941          347 RRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAR  414 (433)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~  414 (433)
                                                             ..++.+++.+++++..+|+.||++|+++.
T Consensus       477 ---------------------------------------alp~~vpp~~rqlV~~lL~r~pskRvsp~  505 (598)
T KOG4158|consen  477 ---------------------------------------ALPSRVPPVARQLVFDLLKRDPSKRVSPN  505 (598)
T ss_pred             ---------------------------------------CCcccCChHHHHHHHHHhcCCccccCCcc
Confidence                                                   12345678999999999999999999843

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.90  E-value=2.7e-23  Score=181.00  Aligned_cols=137  Identities=22%  Similarity=0.229  Sum_probs=106.0

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchh---h------------------------HHHHHHHHHHHHHHHhCC
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---Y------------------------REAAMIEIDVLQRLARHD  149 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~------------------------~~~~~~E~~~l~~l~~~~  149 (433)
                      ...||+|+||.||+|.+. +|+.||||+++....   .                        .....+|+.++.++.+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAG   80 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            468999999999999986 899999999975321   0                        112345999999999988


Q ss_pred             CCCcceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH-HhCCcEecCCCCCcEEE
Q 013941          150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM-HELRLIHTDLKPENILL  227 (433)
Q Consensus       150 i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~L-H~~~ivHrDikp~NIli  227 (433)
                      +..+.++..      .+ .+|||||+ |+++.......  ..+++..+..++.||+.+|.++ |+.||+||||||+|||+
T Consensus        81 v~~p~~~~~------~~-~~iVmE~i~g~~l~~~~~~~--~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli  151 (190)
T cd05147          81 IPCPEPILL------KS-HVLVMEFIGDDGWAAPRLKD--APLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLY  151 (190)
T ss_pred             CCCCcEEEe------cC-CEEEEEEeCCCCCcchhhhc--CCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEE
Confidence            755544321      12 37999999 65665443332  3689999999999999999999 79999999999999999


Q ss_pred             eeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccc
Q 013941          228 VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE  271 (433)
Q Consensus       228 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~  271 (433)
                      +. +                           .++|+|||+|...
T Consensus       152 ~~-~---------------------------~v~LiDFG~a~~~  167 (190)
T cd05147         152 HD-G---------------------------KLYIIDVSQSVEH  167 (190)
T ss_pred             EC-C---------------------------cEEEEEccccccC
Confidence            62 2                           4899999988754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.89  E-value=3.1e-22  Score=175.05  Aligned_cols=137  Identities=20%  Similarity=0.151  Sum_probs=105.2

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchhh---------------------------HHHHHHHHHHHHHHHhCC
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY---------------------------REAAMIEIDVLQRLARHD  149 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---------------------------~~~~~~E~~~l~~l~~~~  149 (433)
                      .+.||+|+||.||+|.+. +|+.||||+++.....                           .....+|...+.++.+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05145           2 NGCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAG   80 (190)
T ss_pred             CceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            468999999999999987 8999999998753210                           122357899999999988


Q ss_pred             CCCcceeEecceeccCCeEEEEEccC-CCCHHHH-HHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEE
Q 013941          150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDF-LRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENIL  226 (433)
Q Consensus       150 i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~-l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIl  226 (433)
                      +..+..+..     .  ..+|||||+ |+++... +..   ..++...+..++.|++.+|.++|+ +||+||||||+|||
T Consensus        81 i~~p~~~~~-----~--~~~lVmE~~~g~~~~~~~l~~---~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIl  150 (190)
T cd05145          81 VPVPEPILL-----K--KNVLVMEFIGDDGSPAPRLKD---VPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNIL  150 (190)
T ss_pred             CCCceEEEe-----c--CCEEEEEEecCCCchhhhhhh---ccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEE
Confidence            744443321     1  248999999 5544333 333   257889999999999999999999 99999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcccc
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH  272 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~  272 (433)
                      ++ ++                           .++|+|||++....
T Consensus       151 l~-~~---------------------------~~~liDFG~a~~~~  168 (190)
T cd05145         151 YH-DG---------------------------KPYIIDVSQAVELD  168 (190)
T ss_pred             EE-CC---------------------------CEEEEEcccceecC
Confidence            96 33                           47888888876543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10345 hypothetical protein; Provisional

Probab=99.88  E-value=4.9e-22  Score=174.63  Aligned_cols=126  Identities=21%  Similarity=0.236  Sum_probs=102.7

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccc-hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC---e-EEEE
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN---H-ICIV  171 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~---~-~~lv  171 (433)
                      .+.||+|+||.||.  +..++.. +||++... ....+.+.+|+.+++.+.|.+..|+|+++++++++++.   . +.+|
T Consensus         7 ~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I   83 (210)
T PRK10345          7 QSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVI   83 (210)
T ss_pred             cceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEE
Confidence            46899999999995  6677665 69988653 23456788999999999988888888899999998863   4 4489


Q ss_pred             EccC---CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHH-HHHHhCCcEecCCCCCcEEEeeC
Q 013941          172 FEKL---GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV-AFMHELRLIHTDLKPENILLVSA  230 (433)
Q Consensus       172 ~e~~---~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL-~~LH~~~ivHrDikp~NIli~~~  230 (433)
                      |||+   +++|.+++.+.   .+++.  ..++.|++.++ +|||+++||||||||+|||++..
T Consensus        84 ~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~  141 (210)
T PRK10345         84 ADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRI  141 (210)
T ss_pred             ecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEecc
Confidence            9994   58999999663   36665  35678888888 99999999999999999999753

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.88  E-value=5.7e-22  Score=170.81  Aligned_cols=182  Identities=15%  Similarity=0.121  Sum_probs=133.3

Q ss_pred             EEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHH-----HHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE-----AAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-----~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .+...|++|+||+||++..  .+..++.+.+........     .+.+|+++|++|.|+    +++++++++    +..+
T Consensus         5 ~~~~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~----~~vP~ll~~----~~~~   74 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGL----PRTPRLLHW----DGRH   74 (218)
T ss_pred             ccceeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCC----CCCCEEEEE----cCEE
Confidence            3567999999999998864  677788777765443222     578899999999763    223666664    3469


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCC-CCCcEEEeeCCcccccCccccccCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDL-KPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDi-kp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++|||+ |.+|.+.+..        . ...++.|++.+|.++|++||+|||| ||+|||++.+|                
T Consensus        75 lvmeyI~G~~L~~~~~~--------~-~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g----------------  129 (218)
T PRK12274         75 LDRSYLAGAAMYQRPPR--------G-DLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDG----------------  129 (218)
T ss_pred             EEEeeecCccHHhhhhh--------h-hHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCC----------------
Confidence            999999 8888654321        1 1357889999999999999999999 79999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCCc----------------ccccCCcccchhhhhCC-CCC-ccchHHHHHHHHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHS----------------YVVSTRHYRAPEVILGL-GWN-YPCDLWSVGCILV  309 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~----------------~~~gt~~y~aPE~~~~~-~~~-~~~DiwSlG~il~  309 (433)
                                 .++|+|||++........                ....++.|++|+...-. ..+ ...++++.|+-+|
T Consensus       130 -----------~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~  198 (218)
T PRK12274        130 -----------SPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVY  198 (218)
T ss_pred             -----------CEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHH
Confidence                       467777777764433221                12357889999865433 334 5678899999999


Q ss_pred             HHHhCCCCCCCCC
Q 013941          310 ELCSGEALFQTHE  322 (433)
Q Consensus       310 el~~g~~pf~~~~  322 (433)
                      .++|+..++.+++
T Consensus       199 ~~~~~~~~~~~~~  211 (218)
T PRK12274        199 RFVTRRVLHWEDN  211 (218)
T ss_pred             HHHhccCCccccC
Confidence            9999998876544

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1e-21  Score=201.78  Aligned_cols=199  Identities=26%  Similarity=0.395  Sum_probs=154.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ...|.|.+.||+|+||.||+|.... |+.||||+-+....+.  +-.=.+++.+|+ +-+ .+.+..+...+...+.-+|
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~-~~~~alK~e~P~~~WE--fYI~~q~~~RLk-~~~-~~~~~~~~~a~~~~~~S~l  771 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSN-GKLVALKVEKPPNPWE--FYICLQVMERLK-PQM-LPSIMHISSAHVFQNASVL  771 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCC-CcEEEEEeecCCCcee--eeehHHHHHhhc-hhh-hcchHHHHHHHccCCccee
Confidence            3579999999999999999999877 9999999976543321  111122333443 110 1222666666677788899


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      |+||. -|+|.+++...  +.+++..+..+..||+.-+++||..+|||+||||+|+||...-.   .|            
T Consensus       772 v~ey~~~Gtlld~~N~~--~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~---~~------------  834 (974)
T KOG1166|consen  772 VSEYSPYGTLLDLINTN--KVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREIC---AD------------  834 (974)
T ss_pred             eeeccccccHHHhhccC--CCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccC---CC------------
Confidence            99999 99999999854  48999999999999999999999999999999999999964321   11            


Q ss_pred             cccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                           .+...++|+|||.+....-     .-...++|-.+-.+|+..|.++++.+|.|.|..+++.||.|++
T Consensus       835 -----~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  835 -----SDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             -----CcccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence                 1244689999998864331     1233578999999999999999999999999999999999964

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=9.3e-22  Score=185.99  Aligned_cols=252  Identities=23%  Similarity=0.318  Sum_probs=159.2

Q ss_pred             CeEEeccccccccEEEEEEEecCC---CcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecc-------e
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEK---KELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRN-------W  161 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~-------~  161 (433)
                      .+.+.+..+.++++.+...+...+   .+.++-|....+. .......+++..+....|++.     ..+.+       .
T Consensus       245 s~~~~k~~~~~~~~~~~~~q~~~~~s~~E~~~s~~~~~d~~~~~~~~~r~~~~l~~~~~~~~-----s~~~d~~~s~~~~  319 (516)
T KOG1033|consen  245 SSSISKSSERVSSGIVFEKQGKNNSSLREWLKSKRADVDSLCACKYTFRQLGVLVDSSHSNR-----SILEDLRPSLFES  319 (516)
T ss_pred             cccccccccccccCCchhhhhcccchhhhhccchhhhccchhhhhhhhhhhhheeccccCCc-----ccccCCCCchhhh
Confidence            455666677777777665553333   3334444333322 233344456656655555543     21111       1


Q ss_pred             ec-----cCCeEEEEEccC-CCCHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccc
Q 013941          162 FD-----YRNHICIVFEKL-GPSLYDFLRKN-SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       162 ~~-----~~~~~~lv~e~~-~~~L~~~l~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~  234 (433)
                      +.     ...++||.|++| ..+|.++|... .....+......++.|++.|++|   +|.+|||+||.||++..++.+|
T Consensus       320 ~~~~~v~~~~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~~d~q~k  396 (516)
T KOG1033|consen  320 SKRNKVGKKVYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KGLIHRDLKPSNIFFSDDDQLK  396 (516)
T ss_pred             ccccccccccchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---ccchhhhccccccccccchhhh
Confidence            11     123689999999 99999999733 33456778899999999999999   9999999999999987766555


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-  313 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-  313 (433)
                      |.|||+........+                  ........+.-+||..||+||.+.+..|+.++||||||+||+|++. 
T Consensus       397 IgDFgl~ts~~~~~~------------------~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~  458 (516)
T KOG1033|consen  397 IGDFGLVTSQDKDET------------------VAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQ  458 (516)
T ss_pred             hhhhhheeecccCCc------------------ccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHH
Confidence            555554332221110                  0000112234589999999999999999999999999999999997 


Q ss_pred             CCCCCCCCChHHHHHHHHHH-hcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          314 GEALFQTHENLEHLAMMERV-LGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      =...|.      ....+..+ -+.+|+.++                                              .. .
T Consensus       459 f~T~~e------r~~t~~d~r~g~ip~~~~----------------------------------------------~d-~  485 (516)
T KOG1033|consen  459 FSTQFE------RIATLTDIRDGIIPPEFL----------------------------------------------QD-Y  485 (516)
T ss_pred             hccHHH------HHHhhhhhhcCCCChHHh----------------------------------------------hc-C
Confidence            222221      11111110 112221110                                              11 1


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      +.-.+|+.+||...|.+||++.+.--|.|.+
T Consensus       486 p~e~~ll~~lls~~p~~RP~~~~~~~~~~~~  516 (516)
T KOG1033|consen  486 PEEYTLLQQLLSPSPEERPSAIEVALHEFLQ  516 (516)
T ss_pred             cHHHHHHHHhcCCCcccCchHHHHhhhhhcC
Confidence            2445899999999999999988888888753

>smart00090 RIO RIO-like kinase

Probab=99.84  E-value=1.6e-20  Score=169.11  Aligned_cols=140  Identities=24%  Similarity=0.191  Sum_probs=107.4

Q ss_pred             eEEeccccccccEEEEEEE-ecCCCcEEEEEEeccchh-------------------------hHHHHHHHHHHHHHHHh
Q 013941           94 YRILSKMGEGTFGQVVECF-DNEKKELVAIKIVRSINK-------------------------YREAAMIEIDVLQRLAR  147 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~-~~~~~~~vavK~~~~~~~-------------------------~~~~~~~E~~~l~~l~~  147 (433)
                      |.+.+.||+|+||.||+|. +..+|+.||||+++....                         ......+|+.++.++.+
T Consensus        30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~  109 (237)
T smart00090       30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYE  109 (237)
T ss_pred             HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999999998 677899999999874321                         11235679999999987


Q ss_pred             CCCCCcceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC-cEecCCCCCcE
Q 013941          148 HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR-LIHTDLKPENI  225 (433)
Q Consensus       148 ~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~-ivHrDikp~NI  225 (433)
                      ..+..+   .++.+    ...++||||+ |.+|........  .+....+..++.||+.+|++||++| |+||||||+||
T Consensus       110 ~~i~~p---~~~~~----~~~~lV~E~~~g~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NI  180 (237)
T smart00090      110 AGVPVP---KPIAW----RRNVLVMEFIGGDGLPAPRLKDV--EPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNI  180 (237)
T ss_pred             cCCCCC---eeeEe----cCceEEEEEecCCcccccccccC--CcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhE
Confidence            544222   22322    2348999999 667766543322  4666778899999999999999999 99999999999


Q ss_pred             EEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcc
Q 013941          226 LLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF  270 (433)
Q Consensus       226 li~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~  270 (433)
                      +++ ++                           .++|+|||.+..
T Consensus       181 li~-~~---------------------------~i~LiDFg~a~~  197 (237)
T smart00090      181 LVH-DG---------------------------KVVIIDVSQSVE  197 (237)
T ss_pred             EEE-CC---------------------------CEEEEEChhhhc
Confidence            996 33                           578999998764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.9e-21  Score=168.73  Aligned_cols=241  Identities=15%  Similarity=0.201  Sum_probs=181.9

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEecc---chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ...++-+|.+...|+.|++++..+.  ++.|++.-   .......+..|.-.|+.+.||||     +.+++.+....++.
T Consensus       191 ~lnl~tkl~e~hsgelwrgrwqgnd--ivakil~vr~~t~risrdfneefp~lrifshpni-----lpvlgacnsppnlv  263 (448)
T KOG0195|consen  191 SLNLITKLAESHSGELWRGRWQGND--IVAKILNVREVTARISRDFNEEFPALRIFSHPNI-----LPVLGACNSPPNLV  263 (448)
T ss_pred             hhhhhhhhccCCCcccccccccCcc--hhhhhhhhhhcchhhcchhhhhCcceeeecCCch-----hhhhhhccCCCCce
Confidence            3566789999999999999876544  66777652   22334567778888988999888     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ++..|| -|+|+..+.....-..+..++.+++.+|++|+.|||+..  |----|....++|+++-..+|           
T Consensus       264 ~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmidedltari-----------  332 (448)
T KOG0195|consen  264 IISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARI-----------  332 (448)
T ss_pred             EeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhhe-----------
Confidence            999999 999999999877667788999999999999999999875  334468888999987654333           


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCC---ccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~---~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                    ..+|--++..    .....-.+.||+||.+...+-+   .++|+|||.+++|||.|...||.....
T Consensus       333 --------------smad~kfsfq----e~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlsp  394 (448)
T KOG0195|consen  333 --------------SMADTKFSFQ----EVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSP  394 (448)
T ss_pred             --------------ecccceeeee----ccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCc
Confidence                          2233222211    1112447889999999877533   689999999999999999999987766


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+.--.|.                                                +..+....++.++..+..|+.-|+
T Consensus       395 mecgmkia------------------------------------------------leglrv~ippgis~hm~klm~icm  426 (448)
T KOG0195|consen  395 MECGMKIA------------------------------------------------LEGLRVHIPPGISRHMNKLMNICM  426 (448)
T ss_pred             hhhhhhhh------------------------------------------------hccccccCCCCccHHHHHHHHHHh
Confidence            55322221                                                111112234556788999999999


Q ss_pred             ccCCCCCCCHHHHh
Q 013941          404 RYDPAERLKAREAL  417 (433)
Q Consensus       404 ~~dP~~R~ta~ell  417 (433)
                      ..||.+||..+.++
T Consensus       427 nedpgkrpkfdmiv  440 (448)
T KOG0195|consen  427 NEDPGKRPKFDMIV  440 (448)
T ss_pred             cCCCCcCCCcceeh
Confidence            99999999988764

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.80  E-value=8e-19  Score=156.42  Aligned_cols=118  Identities=22%  Similarity=0.251  Sum_probs=94.8

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch---------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +.||+|++|.||+|.+  .+..|++|+.....         .......+|+.++..+.++++..+.+     ++.+.+..
T Consensus         2 ~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~-----~~~~~~~~   74 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAV-----YFVDPENF   74 (211)
T ss_pred             cccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeE-----EEEeCCCC
Confidence            6799999999999986  66779999765311         11245678999999999988744433     33445678


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEe
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV  228 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~  228 (433)
                      ++||||+ |++|.+++....     . ....++.+|+.+|.+||+.|++|+|++|+|||++
T Consensus        75 ~lv~e~~~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~  129 (211)
T PRK14879         75 IIVMEYIEGEPLKDLINSNG-----M-EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS  129 (211)
T ss_pred             EEEEEEeCCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE
Confidence            8999999 889999986542     2 7889999999999999999999999999999996

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.78  E-value=3.6e-18  Score=150.75  Aligned_cols=128  Identities=23%  Similarity=0.255  Sum_probs=99.0

Q ss_pred             cccccccEEEEEEEecCCCcEEEEEEeccch---------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           99 KMGEGTFGQVVECFDNEKKELVAIKIVRSIN---------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        99 ~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .||+|+||.||+|.  .++..|++|+.....         .....+.+|++++..+.++++..+.+.   .  ...+..+
T Consensus         1 ~ig~G~~~~vy~~~--~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~---~--~~~~~~~   73 (199)
T TIGR03724         1 LIAKGAEAIIYLGD--FLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVY---D--VDPDNKT   73 (199)
T ss_pred             CCCCCceEEEEEee--cCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE---E--EECCCCE
Confidence            48999999999998  456789999864321         112456689999999998876443332   2  2345678


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ |++|.+++....   .      .++.|++.+|.+||+.|++|+|++|+||+++ ++                 
T Consensus        74 lv~e~~~g~~l~~~~~~~~---~------~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~-----------------  126 (199)
T TIGR03724        74 IVMEYIEGKPLKDVIEEGN---D------ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DD-----------------  126 (199)
T ss_pred             EEEEEECCccHHHHHhhcH---H------HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CC-----------------
Confidence            999999 999998876432   1      7899999999999999999999999999996 33                 


Q ss_pred             CcccCCCCCCCeeeecCCCCcc
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTF  270 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~  270 (433)
                                .++++|||.+..
T Consensus       127 ----------~~~liDfg~a~~  138 (199)
T TIGR03724       127 ----------KLYLIDFGLGKY  138 (199)
T ss_pred             ----------cEEEEECCCCcC
Confidence                      578888888765

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.77  E-value=2.7e-18  Score=151.28  Aligned_cols=136  Identities=25%  Similarity=0.249  Sum_probs=102.7

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-----------------------hHHHHHHHHHHHHHHHhCCC
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-----------------------YREAAMIEIDVLQRLARHDI  150 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----------------------~~~~~~~E~~~l~~l~~~~i  150 (433)
                      |.+.+.||+|+||.||++... +|+.||||+++....                       ......+|+.++..+.+.++
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhcCCccccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            888899999999999999864 799999998764220                       11235678999999988754


Q ss_pred             CCcceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       151 ~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                      ..   ...++    ....++||||+ |++|......        .....++.+|+.++.++|+.||+||||||+||+++.
T Consensus        96 ~v---~~~~~----~~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~  160 (198)
T cd05144          96 PV---PKPID----WNRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDD  160 (198)
T ss_pred             CC---Cceee----cCCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcC
Confidence            22   22222    23458999999 8888765321        345678899999999999999999999999999965


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcccc
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH  272 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~  272 (433)
                      ++                           .++|+|||++....
T Consensus       161 ~~---------------------------~~~liDfg~~~~~~  176 (198)
T cd05144         161 DE---------------------------KIYIIDWPQMVSTD  176 (198)
T ss_pred             CC---------------------------cEEEEECCccccCC
Confidence            44                           57888888775443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=8.4e-20  Score=184.13  Aligned_cols=255  Identities=20%  Similarity=0.305  Sum_probs=188.1

Q ss_pred             CeEEeccccccccEEEEEEEecC-CCcEEEEEEeccch---hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceeccCCe
Q 013941           93 RYRILSKMGEGTFGQVVECFDNE-KKELVAIKIVRSIN---KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~-~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .|.+.+.||+|+|+.|-.+.... ....+|.|.+....   ........|..+-+.+. |.|+     +.+++...+.+.
T Consensus        21 ~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~-----~~~~~~~~~~~~   95 (601)
T KOG0590|consen   21 QYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNT-----VHMIEPSSSPRS   95 (601)
T ss_pred             cccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccc-----cccCCccCCCcc
Confidence            48888899999999999887643 34456777665332   23334445777777776 6555     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH-hCCcEecCCCCCcEEEeeCC-cccccCccccccC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPENILLVSAE-YVKVPDYKFLSRS  244 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH-~~~ivHrDikp~NIli~~~~-~~~l~d~~~~~~~  244 (433)
                      .++++++. |+++.+.+........+...+..++.|+..+|.|+| ..++.||||||+|.+++..+ .            
T Consensus        96 ~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~------------  163 (601)
T KOG0590|consen   96 YLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSA------------  163 (601)
T ss_pred             cccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhccCCCc------------
Confidence            99999999 999998884222225778889999999999999999 99999999999999998766 4            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccC-C-----Cccccc-CCcccchhhhhCCC-CCccchHHHHHHHHHHHHhCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-D-----HSYVVS-TRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-~-----~~~~~g-t~~y~aPE~~~~~~-~~~~~DiwSlG~il~el~~g~~  316 (433)
                                     +++.|||+|..... .     ....+| ++.|+|||...+.. .....|+||.|+++.-+++|..
T Consensus       164 ---------------l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~  228 (601)
T KOG0590|consen  164 ---------------LKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGEL  228 (601)
T ss_pred             ---------------ccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCC
Confidence                           45555555543322 1     112477 99999999998854 4688999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      |+.........                              ...|....               .......+...+....
T Consensus       229 p~~~~~~~~~~------------------------------~~~~~~~~---------------~~~~~~~~~~~~~~~~  263 (601)
T KOG0590|consen  229 PWDFPSRKDGR------------------------------YSSWKSNK---------------GRFTQLPWNSISDQAH  263 (601)
T ss_pred             Ccccccccccc------------------------------ceeecccc---------------cccccCccccCChhhh
Confidence            98654332200                              00111100               0001112345566888


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      +++.++|..+|..|.+.+++..++|+..
T Consensus       264 ~~l~k~l~~~~~~r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  264 DLLHKILKENPSNRLSIEELKLDNWLSS  291 (601)
T ss_pred             hcccccccCCchhccccccccccccccc
Confidence            9999999999999999999999999998

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.75  E-value=1.7e-17  Score=167.84  Aligned_cols=142  Identities=23%  Similarity=0.232  Sum_probs=106.3

Q ss_pred             eecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEec-c---ch-----hhHHHHHHHHHHHHHHHhCCCCCcc
Q 013941           84 FAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR-S---IN-----KYREAAMIEIDVLQRLARHDIGGTR  154 (433)
Q Consensus        84 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~-~---~~-----~~~~~~~~E~~~l~~l~~~~i~~~~  154 (433)
                      ..........|...+.||+|+||+||++.+....  +++|+.. +   ..     ...+.+.+|++++..+.|+++    
T Consensus       325 ~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~--~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i----  398 (535)
T PRK09605        325 WIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGRD--AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGV----  398 (535)
T ss_pred             eccccccccccCccceeccCCcEEEEEEeecCcc--ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCC----
Confidence            3334444556778899999999999999865443  4444321 1   11     123457789999999999887    


Q ss_pred             eeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcc
Q 013941          155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYV  233 (433)
Q Consensus       155 ~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~  233 (433)
                       +....++......++||||+ |++|.+++.          ....++.|++.+|.+||+.||+||||||+|||++ ++  
T Consensus       399 -~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl~-~~--  464 (535)
T PRK09605        399 -PTPVIYDVDPEEKTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIVR-DD--  464 (535)
T ss_pred             -CeeEEEEEeCCCCEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhCCCccCCCChHHEEEE-CC--
Confidence             44444444556678999999 999998875          3467899999999999999999999999999993 22  


Q ss_pred             cccCccccccCCCCCCcccCCCCCCCeeeecCCCCcc
Q 013941          234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF  270 (433)
Q Consensus       234 ~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~  270 (433)
                                               .++|+|||++..
T Consensus       465 -------------------------~~~liDFGla~~  476 (535)
T PRK09605        465 -------------------------RLYLIDFGLGKY  476 (535)
T ss_pred             -------------------------cEEEEeCccccc
Confidence                                     478999998864

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=5e-18  Score=163.84  Aligned_cols=261  Identities=21%  Similarity=0.285  Sum_probs=189.7

Q ss_pred             cCCCeEEeccccc--cccEEEEEEEe--cCCCcEEEEEEecc---chhhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           90 LTPRYRILSKMGE--GTFGQVVECFD--NEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        90 ~~~~y~~~~~lg~--G~~g~V~~~~~--~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      +...+.+.+.+|.  |.+|.||.+..  ..++..+|+|.-+.   .......-.+|+.-..++.    .|.+.++.+..+
T Consensus       112 ~~~~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~----~~~~~v~~~~~~  187 (524)
T KOG0601|consen  112 FDQRFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKID----SHENPVRDSPAW  187 (524)
T ss_pred             hhhhcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccC----ccccccccCccc
Confidence            3456888999999  99999999998  88899999997432   1122222334554444433    235568888899


Q ss_pred             ccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHH----HHHHHHhCCcEecCCCCCcEEEeeC-CcccccC
Q 013941          163 DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE----SVAFMHELRLIHTDLKPENILLVSA-EYVKVPD  237 (433)
Q Consensus       163 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~----aL~~LH~~~ivHrDikp~NIli~~~-~~~~l~d  237 (433)
                      +.++..++-+|+|+.+|..+..... ..++...++.++.+...    ||.++|+.+|+|-|+||+||++..+ ..++++|
T Consensus       188 e~~~~lfiqtE~~~~sl~~~~~~~~-~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~d  266 (524)
T KOG0601|consen  188 EGSGILFIQTELCGESLQSYCHTPC-NFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTD  266 (524)
T ss_pred             ccCCcceeeeccccchhHHhhhccc-ccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCC
Confidence            9999999999999999998887654 35889999999999999    9999999999999999999999988 7788888


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                      |+++.                  +|.|.+++...... ....|..-|++||+..+ -++...||+++|.++.+..++..+
T Consensus       267 f~~v~------------------~i~~~~~~~~~~~~-~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~ev~l~~~l~~~~  326 (524)
T KOG0601|consen  267 FGLVS------------------KISDGNFSSVFKVS-KRPEGDCIYAAKELLNG-LATFASDIFSLGEVILEAILGSHL  326 (524)
T ss_pred             cceeE------------------EccCCccccceeee-ecCCCCceEeChhhhcc-ccchHhhhcchhhhhHhhHhhccc
Confidence            87754                  33333333222211 11245667999999766 678999999999999999988766


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      +......                                   .|..              .+......+.....+.++..
T Consensus       327 ~~~g~~~-----------------------------------~W~~--------------~r~~~ip~e~~~~~s~~l~~  357 (524)
T KOG0601|consen  327 PSVGKNS-----------------------------------SWSQ--------------LRQGYIPLEFCEGGSSSLRS  357 (524)
T ss_pred             ccCCCCC-----------------------------------Cccc--------------cccccCchhhhcCcchhhhh
Confidence            5432100                                   0100              00001112223344556777


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      .+.+|++.+|-.|++++.+++|+++.+
T Consensus       358 ~~~~~~d~~~~~~~~~q~~~~l~~i~s  384 (524)
T KOG0601|consen  358 VTSQMLDEDPRLRLTAQILTALNVIHS  384 (524)
T ss_pred             HHHHhcCcchhhhhHHHHHhccccccc
Confidence            999999999999999999999999874

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.75  E-value=6.2e-18  Score=163.15  Aligned_cols=195  Identities=19%  Similarity=0.264  Sum_probs=140.6

Q ss_pred             CcceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCc-EecCCCCCcEEEee
Q 013941          152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL-IHTDLKPENILLVS  229 (433)
Q Consensus       152 ~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i-vHrDikp~NIli~~  229 (433)
                      |.|+.++++.+.++...++|.+|| .|+|.|.+.... ..++......++++|+.||.|||+..| .|+.++..|++++.
T Consensus         6 h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~-~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~   84 (484)
T KOG1023|consen    6 HDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNED-IKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDS   84 (484)
T ss_pred             hhhhhhheeeEecCCceEEEEeeecCccHHhHHhccc-cCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccceeee
Confidence            344499999999999999999999 999999998743 468888999999999999999998766 99999999999976


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCCC-------CCc
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLG-------WNY  297 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~-------~~~  297 (433)
                      .-                           .+||+|||+......     ......-..-|.|||.+.+..       .+.
T Consensus        85 ~w---------------------------~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~  137 (484)
T KOG1023|consen   85 RW---------------------------VLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQ  137 (484)
T ss_pred             eE---------------------------EEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccc
Confidence            55                           456666665544321     111122345699999998741       467


Q ss_pred             cchHHHHHHHHHHHHhCCCCCCCCChH----HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHH
Q 013941          298 PCDLWSVGCILVELCSGEALFQTHENL----EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA  373 (433)
Q Consensus       298 ~~DiwSlG~il~el~~g~~pf~~~~~~----~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (433)
                      +.||||||++++|+++...||......    +.+..+.. .+..+                                   
T Consensus       138 ~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~-~~~~~-----------------------------------  181 (484)
T KOG1023|consen  138 KGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKK-GGSNP-----------------------------------  181 (484)
T ss_pred             cCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHh-cCCCC-----------------------------------
Confidence            899999999999999999999753321    22222221 00000                                   


Q ss_pred             HHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHh
Q 013941          374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREAL  417 (433)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell  417 (433)
                           ..|..  ....+..+++..++.+||..+|.+||+++++-
T Consensus       182 -----~rP~i--~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~  218 (484)
T KOG1023|consen  182 -----FRPSI--ELLNELPPELLLLVARCWEEIPEKRPSIEQIR  218 (484)
T ss_pred             -----cCcch--hhhhhcchHHHHHHHHhcccChhhCccHHHHH
Confidence                 00000  00013344788999999999999999998874

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.72  E-value=4.2e-17  Score=142.45  Aligned_cols=120  Identities=28%  Similarity=0.275  Sum_probs=84.1

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchhh---HH----------------------HHHHHHHHHHHHHhCCCC
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY---RE----------------------AAMIEIDVLQRLARHDIG  151 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~----------------------~~~~E~~~l~~l~~~~i~  151 (433)
                      .+.||+|+||.||+|.+. +++.||||+++.....   ..                      ....|...+.++.+.++.
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~   80 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVP   80 (187)
T ss_pred             CcccccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCC
Confidence            468999999999999976 7899999998743211   01                      113567777777766542


Q ss_pred             CcceeEecceeccCCeEEEEEccC-CCCHH-HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEe
Q 013941          152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLY-DFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLV  228 (433)
Q Consensus       152 ~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~-~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~  228 (433)
                      .+   ..+..    ...++||||+ ++++. ..+....   .. ..++.++.+++.++.++|. .||+||||||+||+++
T Consensus        81 ~~---~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~---~~-~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~  149 (187)
T cd05119          81 VP---KPIDL----NRHVLVMEFIGGDGIPAPRLKDVR---LL-EDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD  149 (187)
T ss_pred             CC---ceEec----CCCEEEEEEeCCCCccChhhhhhh---hc-ccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE
Confidence            22   22221    2358999999 53322 1121111   11 6678999999999999999 9999999999999996

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.69  E-value=6.3e-16  Score=139.60  Aligned_cols=134  Identities=20%  Similarity=0.196  Sum_probs=97.1

Q ss_pred             cccc-ccccEEEEEEEecCCCcEEEEEEeccch--------------hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           98 SKMG-EGTFGQVVECFDNEKKELVAIKIVRSIN--------------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        98 ~~lg-~G~~g~V~~~~~~~~~~~vavK~~~~~~--------------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      ..|| .||.|+||.+...  +..++||.+....              .....+.+|+.++.++.+.++..+..   +++.
T Consensus        37 ~~lg~~~g~gtv~~v~~~--~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~p---l~~~  111 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQTP--GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRP---IAAR  111 (239)
T ss_pred             ceeecCCCCccEEEEEeC--CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCcee---Eeee
Confidence            3566 7788888888753  6779999885311              12345778999999999988643333   3322


Q ss_pred             cc-CC---eEEEEEccC-C-CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          163 DY-RN---HICIVFEKL-G-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       163 ~~-~~---~~~lv~e~~-~-~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                      .. ..   ..++|||++ | .+|.+++...   .+++..    +.||+.+|.+||++||+||||||+|||++.++     
T Consensus       112 ~~~~~~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~~~----~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~-----  179 (239)
T PRK01723        112 VVRHGLFYRADILIERIEGARDLVALLQEA---PLSEEQ----WQAIGQLIARFHDAGVYHADLNAHNILLDPDG-----  179 (239)
T ss_pred             eeecCcceeeeEEEEecCCCCCHHHHHhcC---CCCHHH----HHHHHHHHHHHHHCCCCCCCCCchhEEEcCCC-----
Confidence            21 22   236999999 5 5899888653   455543    57899999999999999999999999996533     


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCcc
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF  270 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~  270 (433)
                                            .++|+|||.+..
T Consensus       180 ----------------------~v~LIDfg~~~~  191 (239)
T PRK01723        180 ----------------------KFWLIDFDRGEL  191 (239)
T ss_pred             ----------------------CEEEEECCCccc
Confidence                                  588999998764

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.67  E-value=2.4e-17  Score=167.11  Aligned_cols=280  Identities=22%  Similarity=0.281  Sum_probs=198.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhH----HHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR----EAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +.+.+.+-+-+|+++.++.+.-..+|...++|+........    +....+-.++-..     .+|.++...-.+.....
T Consensus       804 d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p-----~~P~v~~~~~s~~~rsP  878 (1205)
T KOG0606|consen  804 DGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITP-----RSPAVVRSFPSFPCRSP  878 (1205)
T ss_pred             ccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccC-----CCCceecccCCCCCCCC
Confidence            34778889999999999999877788767777654332211    1111111111111     12334544444556778


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .+||++|+ +++|...++..+  ..+.+-++.+...+..++++||...++|||++|.|+|+..+|+.++++|+.......
T Consensus       879 ~~L~~~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~  956 (1205)
T KOG0606|consen  879 LPLVGHYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGL  956 (1205)
T ss_pred             cchhhHHhccCCchhhhhcCC--CcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCcccccccccc
Confidence            99999999 889999988765  677888888999999999999999999999999999999999999999985544332


Q ss_pred             CCCcccCCCCCCCeeeecCCCCcccc-------CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEH-------QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                      -...............-+++.+....       .......||+.|.+||...+......+|+|++|++++|.++|.+||.
T Consensus       957 ~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~n 1036 (1205)
T KOG0606|consen  957 IPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFN 1036 (1205)
T ss_pred             ccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCC
Confidence            21110000011111112222221111       11233589999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      .....+.+..|...                        ...|+.+.                       ...+...++++
T Consensus      1037 a~tpq~~f~ni~~~------------------------~~~~p~g~-----------------------~~~s~~aq~~~ 1069 (1205)
T KOG0606|consen 1037 AETPQQIFENILNR------------------------DIPWPEGP-----------------------EEGSYEAQDLI 1069 (1205)
T ss_pred             CcchhhhhhccccC------------------------CCCCCCCc-----------------------cccChhhhhhh
Confidence            88877766555432                        23344322                       23466889999


Q ss_pred             HHhcccCCCCCCCHH---HHhcCCCCCCC
Q 013941          400 QGLLRYDPAERLKAR---EALRHPFFTRD  425 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~---ell~hp~f~~~  425 (433)
                      ...|..+|.+|..+.   ++-.|+||+..
T Consensus      1070 ~~ll~~~~~qr~~a~~~~e~k~~~~~~~~ 1098 (1205)
T KOG0606|consen 1070 NRLLTEEPTQRLGAKGAAEVKGHPFFQDV 1098 (1205)
T ss_pred             hhhhccCchhccCcccccccccCCccCCC
Confidence            999999999999887   99999999864

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.66  E-value=9.4e-16  Score=128.64  Aligned_cols=121  Identities=25%  Similarity=0.272  Sum_probs=96.8

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      +++.||+|.++.||++....  ..+++|....... ...+..|+.+++.+.+.+   .++++++.++...+..+++|||+
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~--~~~~iK~~~~~~~-~~~~~~e~~~~~~l~~~~---~~~p~~~~~~~~~~~~~~v~e~~   75 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD--EDYVLKINPSREK-GADREREVAILQLLARKG---LPVPKVLASGESDGWSYLLMEWI   75 (155)
T ss_pred             cceecccccccceEEEEecC--CeEEEEecCCCCc-hhHHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCccEEEEEec
Confidence            45789999999999998644  6799999865443 456888999999998862   23477777777778899999999


Q ss_pred             -CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcEecCCCCCcEEEeeCC
Q 013941          176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL---RLIHTDLKPENILLVSAE  231 (433)
Q Consensus       176 -~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDikp~NIli~~~~  231 (433)
                       +..+..+         +......++.+++.+|.+||..   +++|+|++|+||+++..+
T Consensus        76 ~g~~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~  126 (155)
T cd05120          76 EGETLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGK  126 (155)
T ss_pred             CCeecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCc
Confidence             6655533         4566678899999999999985   799999999999996533

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.51  E-value=4.6e-13  Score=115.67  Aligned_cols=137  Identities=19%  Similarity=0.222  Sum_probs=99.4

Q ss_pred             eccccccccEEEEEEEecC------CCcEEEEEEeccc-----------------------hhhHHH----HHHHHHHHH
Q 013941           97 LSKMGEGTFGQVVECFDNE------KKELVAIKIVRSI-----------------------NKYREA----AMIEIDVLQ  143 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~------~~~~vavK~~~~~-----------------------~~~~~~----~~~E~~~l~  143 (433)
                      ...||.|-=+.||.|....      .+..+|||+++-.                       ......    ..+|+..|+
T Consensus         2 ~g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~   81 (197)
T cd05146           2 NGCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLK   81 (197)
T ss_pred             CCccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHH
Confidence            3578999999999998643      3578999998510                       011222    337999999


Q ss_pred             HHHhCCCCCcceeEecceeccCCeEEEEEccCCCC-HH-HHHHhcCCCCCCHHHHHHHHHHHHHHHHHH-HhCCcEecCC
Q 013941          144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS-LY-DFLRKNSYRSFPIDLVRELGRQLLESVAFM-HELRLIHTDL  220 (433)
Q Consensus       144 ~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~~~~-L~-~~l~~~~~~~l~~~~~~~i~~qi~~aL~~L-H~~~ivHrDi  220 (433)
                      ++...++..|..+-   +    ...+|||||++++ +. ..+...   .++......+..+++.+|..| |+.||||+||
T Consensus        82 rl~~~Gv~vP~pi~---~----~~~~lvME~Ig~~~~~~~~Lkd~---~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDL  151 (197)
T cd05146          82 RMQKAGIPCPEVVV---L----KKHVLVMSFIGDDQVPAPKLKDA---KLNDEEMKNAYYQVLSMMKQLYKECNLVHADL  151 (197)
T ss_pred             HHHHcCCCCCeEEE---e----cCCEEEEEEcCCCCccchhhhcc---ccCHHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            99998875555543   2    4468999999543 32 122221   356667788889999999999 8999999999


Q ss_pred             CCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccc
Q 013941          221 KPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE  271 (433)
Q Consensus       221 kp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~  271 (433)
                      ++.|||+..                            ..+.|+|||.+...
T Consensus       152 s~~NIL~~~----------------------------~~v~iIDF~qav~~  174 (197)
T cd05146         152 SEYNMLWHD----------------------------GKVWFIDVSQSVEP  174 (197)
T ss_pred             CHHHEEEEC----------------------------CcEEEEECCCceeC
Confidence            999999953                            24899999987654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.50  E-value=1.3e-13  Score=135.31  Aligned_cols=142  Identities=18%  Similarity=0.195  Sum_probs=94.1

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchhh-----------------------------------H------HHHH
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY-----------------------------------R------EAAM  136 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----------------------------------~------~~~~  136 (433)
                      +.||.|++|.||+|+. .+|+.||||+.+.....                                   .      -.+.
T Consensus       123 ~plasaSigQVh~A~l-~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       123 KPLAAASIAQVHRARL-VDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             cceeeeehhheEEEEe-cCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            5799999999999986 47899999998642100                                   0      0234


Q ss_pred             HHHHHHHHHHhCCCCCcceeEeccee-ccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHH-HHHHHHhC
Q 013941          137 IEIDVLQRLARHDIGGTRCVQIRNWF-DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE-SVAFMHEL  213 (433)
Q Consensus       137 ~E~~~l~~l~~~~i~~~~~v~~~~~~-~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~-aL~~LH~~  213 (433)
                      +|...+.++....-.+++ +.+-.++ +.....+|||||+ |++|.++...... ...   ...++.+++. .+..+|..
T Consensus       202 ~Ea~n~~~~~~~~~~~~~-v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~-~~~---~~~ia~~~~~~~l~ql~~~  276 (437)
T TIGR01982       202 REAANASELGENFKNDPG-VYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA-GLD---RKALAENLARSFLNQVLRD  276 (437)
T ss_pred             HHHHHHHHHHHhcCCCCC-EEeCCEehhhcCCceEEEEeECCcccccHHHHHhc-CCC---HHHHHHHHHHHHHHHHHhC
Confidence            466666666543222222 3333333 2345579999999 8899887653211 122   3345556655 47889999


Q ss_pred             CcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcccc
Q 013941          214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH  272 (433)
Q Consensus       214 ~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~  272 (433)
                      |++|+|+||.||+++.+|                           .++++|||++....
T Consensus       277 g~~H~D~hPgNilv~~~g---------------------------~i~liDfG~~~~l~  308 (437)
T TIGR01982       277 GFFHADLHPGNIFVLKDG---------------------------KIIALDFGIVGRLS  308 (437)
T ss_pred             CceeCCCCcccEEECCCC---------------------------cEEEEeCCCeeECC
Confidence            999999999999996554                           57788888776544

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.50  E-value=1.1e-13  Score=137.29  Aligned_cols=148  Identities=19%  Similarity=0.284  Sum_probs=94.9

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-----------------------------------hhHH----
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-----------------------------------KYRE----  133 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----------------------------------~~~~----  133 (433)
                      .|.. +.||+|++|.||+|+.+.+|+.||||+.+..-                                   +..+    
T Consensus       121 ~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~  199 (537)
T PRK04750        121 DFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHD  199 (537)
T ss_pred             hcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHH
Confidence            4665 78999999999999998889999999997431                                   0011    


Q ss_pred             --HHHHHHHHHHHHHhCCCCCcceeEeccee-ccCCeEEEEEccC-CCCHHHHH--HhcCC--CCCCHHHHHHHHHHHHH
Q 013941          134 --AAMIEIDVLQRLARHDIGGTRCVQIRNWF-DYRNHICIVFEKL-GPSLYDFL--RKNSY--RSFPIDLVRELGRQLLE  205 (433)
Q Consensus       134 --~~~~E~~~l~~l~~~~i~~~~~v~~~~~~-~~~~~~~lv~e~~-~~~L~~~l--~~~~~--~~l~~~~~~~i~~qi~~  205 (433)
                        .+.+|+..+.++.+... +...+.+-.++ +.....+|||||+ |+.|.++-  ...+.  ..+.+..+..++.|++ 
T Consensus       200 ElD~~~Ea~N~~~~~~~f~-~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif-  277 (537)
T PRK04750        200 ELDLMREAANASQLRRNFE-DSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVF-  277 (537)
T ss_pred             hhCHHHHHHHHHHHHHHcc-CCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHH-
Confidence              12345555555543221 22223333333 2356678999999 88998753  22220  1244444555555554 


Q ss_pred             HHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcccc
Q 013941          206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH  272 (433)
Q Consensus       206 aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~  272 (433)
                            ..|++|+|+||.||+++.+|                       .....++++|||++....
T Consensus       278 ------~~GffHaDpHPGNIlv~~~g-----------------------~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        278 ------RDGFFHADMHPGNIFVSYDP-----------------------PENPRYIALDFGIVGSLN  315 (537)
T ss_pred             ------hCCeeeCCCChHHeEEecCC-----------------------CCCCeEEEEecceEEECC
Confidence                  59999999999999998765                       123457777777765443

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.49  E-value=5e-14  Score=126.12  Aligned_cols=206  Identities=19%  Similarity=0.284  Sum_probs=139.4

Q ss_pred             HHHHHHHhCCCCCcceeEecceeccC-----CeEEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHH
Q 013941          140 DVLQRLARHDIGGTRCVQIRNWFDYR-----NHICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMH  211 (433)
Q Consensus       140 ~~l~~l~~~~i~~~~~v~~~~~~~~~-----~~~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH  211 (433)
                      ..|..+-|.|+     ++++.++.+.     ....++.||+ .|+|..+|++.  ....+.....++|+-||+.||.|||
T Consensus       119 dnllqlvHsnl-----vkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLh  193 (458)
T KOG1266|consen  119 DNLLQLVHSNL-----VKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLH  193 (458)
T ss_pred             HHHHHHHHHHH-----HHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            44556667766     9999998764     3588999999 99999999743  3356888899999999999999999


Q ss_pred             hCC--cEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhh
Q 013941          212 ELR--LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEV  289 (433)
Q Consensus       212 ~~~--ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~  289 (433)
                      +..  |+|+++..+-|++..+|.+|+.--..      +.       -...++.++       ........+-++|.|||.
T Consensus       194 s~~PpiihgnlTc~tifiq~ngLIkig~~ap------~s-------~h~s~~~~~-------~~Ek~~~~~~~g~~a~~s  253 (458)
T KOG1266|consen  194 SCDPPIIHGNLTCDTIFIQHNGLIKIGSVAP------DS-------THPSVNSTR-------EAEKSVNTSLPGFSAPES  253 (458)
T ss_pred             ccCCccccCCcchhheeecCCceEEecccCc------cc-------cchhhhhhh-------HhhhhccccCCccccCCc
Confidence            885  99999999999998877655421100      00       000000000       001111245678999997


Q ss_pred             hhCCCCCccchHHHHHHHHHHHHhCCCC-CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCch
Q 013941          290 ILGLGWNYPCDLWSVGCILVELCSGEAL-FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR  368 (433)
Q Consensus       290 ~~~~~~~~~~DiwSlG~il~el~~g~~p-f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (433)
                      =.....+.++|||+||....+|..+..- -.+......-..+.+......                              
T Consensus       254 g~~tn~~~a~dIy~fgmcAlemailEiq~tnseS~~~~ee~ia~~i~~le------------------------------  303 (458)
T KOG1266|consen  254 GTTTNTTGASDIYKFGMCALEMAILEIQSTNSESKVEVEENIANVIIGLE------------------------------  303 (458)
T ss_pred             CcccccccchhhhhhhHHHHHHHHheeccCCCcceeehhhhhhhheeecc------------------------------
Confidence            6666678899999999999999887643 222222222222222110000                              


Q ss_pred             hhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          369 DSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                                             ..-=++++.+||+-.|..||+|.+++-||-+-
T Consensus       304 -----------------------n~lqr~~i~kcl~~eP~~rp~ar~llfHpllf  335 (458)
T KOG1266|consen  304 -----------------------NGLQRGSITKCLEGEPNGRPDARLLLFHPLLF  335 (458)
T ss_pred             -----------------------CccccCcCcccccCCCCCCcchhhhhcCceee
Confidence                                   11124788999999999999999999999754

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.47  E-value=3.6e-13  Score=115.50  Aligned_cols=114  Identities=18%  Similarity=0.119  Sum_probs=83.6

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-  175 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-  175 (433)
                      ++.|+.|.++.||+++..  ++.|++|+............+|+.+++.+.+.++.    .+++.+..  ...++|||++ 
T Consensus         3 ~~~l~~G~~~~vy~~~~~--~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~----P~~~~~~~--~~~~lv~e~i~   74 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVA--NKKYVVRIPGNGTELLINRENEAENSKLAAEAGIG----PKLYYFDP--ETGVLITEFIE   74 (170)
T ss_pred             eeecCCcccCceEEEEEC--CeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCC----CceEEEeC--CCCeEEEEecC
Confidence            467899999999999854  77899999765433334467899999999876541    33333332  2347999999 


Q ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCc-----EecCCCCCcEEEe
Q 013941          176 GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL-----IHTDLKPENILLV  228 (433)
Q Consensus       176 ~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i-----vHrDikp~NIli~  228 (433)
                      |.++.+.    .      .....++.+++.+|..||+.++     +|+|++|.||+++
T Consensus        75 G~~l~~~----~------~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~  122 (170)
T cd05151          75 GSELLTE----D------FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD  122 (170)
T ss_pred             CCccccc----c------ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE
Confidence            7666542    0      1123456789999999999985     9999999999996

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=2e-13  Score=132.21  Aligned_cols=250  Identities=21%  Similarity=0.171  Sum_probs=169.8

Q ss_pred             CCCeEEeccccccccEEEEEEEec-CCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDN-EKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ..+|..+..||.|.|+.|+.+... .++..|++|-..+.-   ........|+.+...+.-+    .+.+.....|....
T Consensus       264 ~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~----~~~~g~~~~W~~~r  339 (524)
T KOG0601|consen  264 LTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSH----LPSVGKNSSWSQLR  339 (524)
T ss_pred             cCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcc----cccCCCCCCccccc
Confidence            457899999999999999988755 677889998765322   1122234466666555421    23366666666667


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..|+-.||| ++++...+.-.  ..+.+...+.+..|++.++.++|+..++|+|+||+||++..+|              
T Consensus       340 ~~~ip~e~~~~~s~~l~~~~~--~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~--------------  403 (524)
T KOG0601|consen  340 QGYIPLEFCEGGSSSLRSVTS--QMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDG--------------  403 (524)
T ss_pred             cccCchhhhcCcchhhhhHHH--HhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccch--------------
Confidence            778999999 88776655322  2578888999999999999999999999999999999997753              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCccc--chhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYR--APEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~--aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                  ...+++|||.............++-.+.  +++......+..++|++|||..+.+.+++...-.....
T Consensus       404 ------------~~~~~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~  471 (524)
T KOG0601|consen  404 ------------FFSKLGDFGCWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQ  471 (524)
T ss_pred             ------------hhhhccccccccccceecccccccccccccchhhccccccccccccccccccccccccCcccCccccc
Confidence                        1245666665543222122222233333  55555666788999999999999999988654322111


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .   ..+.+                       +                           ...........+..+.+.|+
T Consensus       472 ~---~~i~~-----------------------~---------------------------~~p~~~~~~~~~q~~~kv~~  498 (524)
T KOG0601|consen  472 S---LTIRS-----------------------G---------------------------DTPNLPGLKLQLQVLLKVMI  498 (524)
T ss_pred             c---eeeec-----------------------c---------------------------cccCCCchHHhhhhhhhhhc
Confidence            0   00000                       0                           00001122347788899999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCC
Q 013941          404 RYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ..++..|+.+.++..|.=|.+.
T Consensus       499 ~~~~~~~~l~~~l~~~~~~~~~  520 (524)
T KOG0601|consen  499 NPDRKRRPSAVELSLHSEFYRD  520 (524)
T ss_pred             CCccccchhhhhhcccchhhhh
Confidence            9999999999999998877654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.41  E-value=3.6e-12  Score=124.82  Aligned_cols=168  Identities=18%  Similarity=0.283  Sum_probs=125.3

Q ss_pred             EEEecCCCcEEEEEEeccchh-hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccCCCCHHHHHHhcCC
Q 013941          110 ECFDNEKKELVAIKIVRSINK-YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSY  188 (433)
Q Consensus       110 ~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~  188 (433)
                      .|..+.++.+|.|...+..+. ..+...+-++.|+.++||+|     +++++.++..+.+|||+|.+. .|..++.+   
T Consensus        30 ~~t~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~I-----l~yL~t~e~~~~~ylvTErV~-Pl~~~lk~---  100 (690)
T KOG1243|consen   30 DGTRKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNI-----LSYLDTTEEEGTLYLVTERVR-PLETVLKE---  100 (690)
T ss_pred             ccceeccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchh-----hhhhhhhcccCceEEEeeccc-cHHHHHHH---
Confidence            466678888899988865443 34556778889999999998     999999999999999999983 35555554   


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH-hCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCC
Q 013941          189 RSFPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS  267 (433)
Q Consensus       189 ~~l~~~~~~~i~~qi~~aL~~LH-~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~  267 (433)
                        +....+...+.||+.||.||| +.+++|++|.-+.|+|+..|.+||.+|.++......+.                  
T Consensus       101 --l~~~~v~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~------------------  160 (690)
T KOG1243|consen  101 --LGKEEVCLGLFQILAALSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNA------------------  160 (690)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCc------------------
Confidence              346778888999999999998 67899999999999999999888888776543322211                  


Q ss_pred             CccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhC
Q 013941          268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       268 a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g  314 (433)
                            ......---.|..|+.+....  ...|.|-|||+++|++.|
T Consensus       161 ------~~~~~~~~~s~~~P~~~~~s~--~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  161 ------PAKSLYLIESFDDPEEIDPSE--WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             ------ccccchhhhcccChhhcCccc--cchhhhhHHHHHHHHhCc
Confidence                  000001111355666543222  567999999999999999

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.39  E-value=1e-11  Score=103.05  Aligned_cols=145  Identities=24%  Similarity=0.220  Sum_probs=110.1

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEec-c--------chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVR-S--------INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~-~--------~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .+..|-+|+-+.|+++.  ..|+.+.||.-. +        ..-......+|+.+|.++..-+|..|.+.     +.+..
T Consensus        11 ~l~likQGAEArv~~~~--~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~-----~~D~~   83 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGS--FSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLI-----FIDTY   83 (229)
T ss_pred             cceeeeccceeeEeeec--cCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEE-----EEecC
Confidence            46788899999999996  567877887421 1        11234567789999999998887554432     33445


Q ss_pred             eEEEEEccCCC--CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          167 HICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       167 ~~~lv~e~~~~--~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .-+|+|||+.|  ++.+++...............++.+|-+.+.-||..+|||+||..+||++.++|             
T Consensus        84 ~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~-------------  150 (229)
T KOG3087|consen   84 GGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDG-------------  150 (229)
T ss_pred             CCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCC-------------
Confidence            56799999955  899999876544444444578899999999999999999999999999998765             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccc
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFE  271 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~  271 (433)
                                 .+..+.++|||++...
T Consensus       151 -----------~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen  151 -----------NQITPILIDFGLSSVS  166 (229)
T ss_pred             -----------CcCceEEEeecchhcc
Confidence                       4456799999998643

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=8.7e-11  Score=98.08  Aligned_cols=130  Identities=22%  Similarity=0.200  Sum_probs=93.6

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEe-cc---ch-----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIV-RS---IN-----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~-~~---~~-----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ..+++|+-+.+|.+..  -|..+++|.= ++   ..     -..+...+|+.++.++...++..|.   ++  +.+.+..
T Consensus         2 ~~i~~GAEa~i~~~~~--~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~---v~--dvD~~~~   74 (204)
T COG3642           2 DLIKQGAEAIIYLTDF--LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPI---VY--DVDPDNG   74 (204)
T ss_pred             chhhCCcceeEEeeec--cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCe---EE--EEcCCCC
Confidence            4678999999999854  3444666642 11   11     1235567899999999988774333   22  2345667


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      .|+|||. |..|.+.+...         ...++..+-.-+.-||..||||+||.++||++...                 
T Consensus        75 ~I~me~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~-----------------  128 (204)
T COG3642          75 LIVMEYIEGELLKDALEEA---------RPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGG-----------------  128 (204)
T ss_pred             EEEEEEeCChhHHHHHHhc---------chHHHHHHHHHHHHHHhcCeecCCCccceEEEeCC-----------------
Confidence            8999999 77788888764         13455666667788999999999999999999643                 


Q ss_pred             CCcccCCCCCCCeeeecCCCCccc
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFE  271 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~  271 (433)
                                 .+.++|||++...
T Consensus       129 -----------~i~~IDfGLg~~s  141 (204)
T COG3642         129 -----------RIYFIDFGLGEFS  141 (204)
T ss_pred             -----------cEEEEECCccccc
Confidence                       3899999998753

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.22  E-value=1e-10  Score=104.89  Aligned_cols=108  Identities=17%  Similarity=0.160  Sum_probs=76.6

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchh--hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC---CeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR---NHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~---~~~~lv~  172 (433)
                      +.|+.|.++.||++.... |+.+++|+......  ......+|+++++.+.+.++..+.   ++.+....   +..++||
T Consensus         4 ~~l~~G~~n~~~~v~~~~-g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~---~~~~~~~~~~~~~~~~v~   79 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGG-GRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPK---VLALCEDPSVLGTPFYVM   79 (223)
T ss_pred             eecCCCccceEEEEEecC-CcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCC---EEEECCCCCccCCceEEE
Confidence            578999999999998643 57899999765432  345678899999999886543333   34444332   3678999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE  212 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  212 (433)
                      ||+ |.++.+.+..   ..+++.....++.+++.+|..||+
T Consensus        80 e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~  117 (223)
T cd05154          80 ERVDGRVLRDRLLR---PELSPEERRALARALADTLAALHS  117 (223)
T ss_pred             EEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhC
Confidence            999 7777665421   146677777777788888877773

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=99.20  E-value=8.2e-10  Score=100.92  Aligned_cols=140  Identities=19%  Similarity=0.085  Sum_probs=99.1

Q ss_pred             EEEEEecCCCcEEEEEEeccchh------------hHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--CCeEEEEEc
Q 013941          108 VVECFDNEKKELVAIKIVRSINK------------YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--RNHICIVFE  173 (433)
Q Consensus       108 V~~~~~~~~~~~vavK~~~~~~~------------~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--~~~~~lv~e  173 (433)
                      |+++.  -.|+.|.||.......            ....+.+|...+.++...+|..|..|-+...-..  ....+||||
T Consensus        38 vvr~~--~~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte  115 (268)
T PRK15123         38 TLRFE--LAGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITE  115 (268)
T ss_pred             EEEEE--ECCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEe
Confidence            44553  3567788897643221            1114779999999999999877766655321111  245789999


Q ss_pred             cCCC--CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          174 KLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       174 ~~~~--~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ++++  +|.+++........+......++.+++..+.-||..||+|+|+++.|||++.+..                   
T Consensus       116 ~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~-------------------  176 (268)
T PRK15123        116 DLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFP-------------------  176 (268)
T ss_pred             eCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEecccc-------------------
Confidence            9944  7999986432234667788899999999999999999999999999999974200                   


Q ss_pred             cCCCCCCCeeeecCCCCc
Q 013941          252 KNLPKSSAIKLIDFGSTT  269 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~  269 (433)
                       ..++...+.|+||+.+.
T Consensus       177 -~~~~~~~~~LIDl~r~~  193 (268)
T PRK15123        177 -GREEDLKLSVIDLHRAQ  193 (268)
T ss_pred             -CCCCCceEEEEECCccc
Confidence             00134568999999775

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.15  E-value=1.4e-11  Score=121.15  Aligned_cols=164  Identities=20%  Similarity=0.326  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCccccc
Q 013941          202 QLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVS  280 (433)
Q Consensus       202 qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~g  280 (433)
                      +.+.||.|+|. .++||++|.|++|.++..|.+|++.|+++........        .....=|+++...       ..-
T Consensus       107 ~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~--------~p~~~yd~~lp~~-------~~~  171 (700)
T KOG2137|consen  107 NVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTE--------YPFSEYDPPLPLL-------LQP  171 (700)
T ss_pred             cccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCc--------cccccCCCCCChh-------hcc
Confidence            34489999995 5899999999999999999999999987654433221        1223334443322       233


Q ss_pred             CCcccchhhhhCCCCCccchHHHHHHHHHHHH-hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccc
Q 013941          281 TRHYRAPEVILGLGWNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARL  359 (433)
Q Consensus       281 t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~-~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  359 (433)
                      ...|.|||++.+...+.++|++|+||++|.+. .|+..+.......... .......                       
T Consensus       172 ~~~f~apE~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~-~~~~~~~-----------------------  227 (700)
T KOG2137|consen  172 HLNFLAPEYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYS-FSRNLLN-----------------------  227 (700)
T ss_pred             CcccccchhhccccccccccceeeeeEEEEEecCCcchhhccCCcchhh-hhhcccc-----------------------
Confidence            55799999999988899999999999999999 4665555433221111 1110000                       


Q ss_pred             cCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          360 DWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                                            .........++.++++=|.++|..++..||++.+++..|||++..
T Consensus       228 ----------------------~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l~~~~ff~D~~  272 (700)
T KOG2137|consen  228 ----------------------AGAFGYSNNLPSELRESLKKLLNGDSAVRPTLDLLLSIPFFSDPG  272 (700)
T ss_pred             ----------------------cccccccccCcHHHHHHHHHHhcCCcccCcchhhhhcccccCCch
Confidence                                  000112246678999999999999999999999999999999753

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.14  E-value=2.2e-10  Score=98.64  Aligned_cols=127  Identities=28%  Similarity=0.338  Sum_probs=80.8

Q ss_pred             EEEEEEecCCCcEEEEEEeccch---------------------------hhHHHHHHHHHHHHHHHhCCCCCcceeEec
Q 013941          107 QVVECFDNEKKELVAIKIVRSIN---------------------------KYREAAMIEIDVLQRLARHDIGGTRCVQIR  159 (433)
Q Consensus       107 ~V~~~~~~~~~~~vavK~~~~~~---------------------------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~  159 (433)
                      .||.|.. .+|..+|||+.+...                           .......+|.+.|.++...++..|..   +
T Consensus         1 ~Vy~~~~-~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p---~   76 (188)
T PF01163_consen    1 DVYHAID-PDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKP---Y   76 (188)
T ss_dssp             EEEEEEE-CTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--E---E
T ss_pred             CEEEEEC-CCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcE---E
Confidence            3888975 567789999975210                           11245667999999998877644443   3


Q ss_pred             ceeccCCeEEEEEccCC--CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH-HHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          160 NWFDYRNHICIVFEKLG--PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF-MHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       160 ~~~~~~~~~~lv~e~~~--~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~-LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                      ++.    ..+|||||++  |.....+....   ++......++.+++..+.. +|..||||+||.+.|||++.+      
T Consensus        77 ~~~----~~~ivME~I~~~G~~~~~l~~~~---~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~~------  143 (188)
T PF01163_consen   77 DYN----RNVIVMEYIGEDGVPLPRLKDVD---LSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDDG------  143 (188)
T ss_dssp             EEE----TTEEEEE--EETTEEGGCHHHCG---GGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEETT------
T ss_pred             EEe----CCEEEEEecCCCccchhhHHhcc---ccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeecc------
Confidence            322    2369999996  64433343321   2345567788888886655 579999999999999999643      


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCcccc
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH  272 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~  272 (433)
                                            .+.++|||.+....
T Consensus       144 ----------------------~~~iIDf~qav~~~  157 (188)
T PF01163_consen  144 ----------------------KVYIIDFGQAVDSS  157 (188)
T ss_dssp             ----------------------CEEE--GTTEEETT
T ss_pred             ----------------------eEEEEecCcceecC
Confidence                                  58999999876543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=99.08  E-value=8.6e-09  Score=98.53  Aligned_cols=167  Identities=18%  Similarity=0.255  Sum_probs=122.3

Q ss_pred             ccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc----CCeEEEEEccC--C
Q 013941          104 TFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY----RNHICIVFEKL--G  176 (433)
Q Consensus       104 ~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~----~~~~~lv~e~~--~  176 (433)
                      ...+.|+|....+|..|++|++.... ........-+++++++.|.|+     |.+.++|..    +..+++|++|+  .
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~Nv-----V~frevf~t~tF~D~SlvlvYDYyP~s  362 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNV-----VPFREVFLTYTFGDLSLVLVYDYYPSS  362 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCce-----eehhhhhhhhccCcceEEEEEecCCCC
Confidence            44578999999999999999984221 111233445788999999888     999998873    56799999998  6


Q ss_pred             CCHHHHHHhc-------------CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          177 PSLYDFLRKN-------------SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       177 ~~L~~~l~~~-------------~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ++|.++.-..             .+...++..+|.++.||..||.++|+.|+.-+-|.|.+||++.+.            
T Consensus       363 ~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv~G~~------------  430 (655)
T KOG3741|consen  363 PTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILVTGKM------------  430 (655)
T ss_pred             chHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEeeCcc------------
Confidence            6888775421             123577899999999999999999999999999999999996543            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                     +++|...|+.........           |.+.+   -.+-|.=.||.+++.|.||..
T Consensus       431 ---------------RIriS~C~i~Dvl~~d~~-----------~~le~---~Qq~D~~~lG~ll~aLAt~~~  474 (655)
T KOG3741|consen  431 ---------------RIRISGCGIMDVLQEDPT-----------EPLES---QQQNDLRDLGLLLLALATGTE  474 (655)
T ss_pred             ---------------eEEEecccceeeecCCCC-----------cchhH---HhhhhHHHHHHHHHHHhhccc
Confidence                           455555554443322220           11111   245688999999999999853

>PRK09902 hypothetical protein; Provisional

Probab=98.96  E-value=2.1e-08  Score=86.91  Aligned_cols=128  Identities=13%  Similarity=0.110  Sum_probs=96.9

Q ss_pred             cccccEEEEEEEecCCCcEEEEEEecc----c---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--CCeEEEE
Q 013941          101 GEGTFGQVVECFDNEKKELVAIKIVRS----I---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--RNHICIV  171 (433)
Q Consensus       101 g~G~~g~V~~~~~~~~~~~vavK~~~~----~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--~~~~~lv  171 (433)
                      |+||.+-|+....  .|+.+-+|.-..    .   ......+.+|+..|.++...++..|.++ +.+.-..  .-..+||
T Consensus        27 ~rgG~SgV~r~~~--~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LV  103 (216)
T PRK09902         27 RRNGMSGVQCVER--NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLV  103 (216)
T ss_pred             CCCCcceEEEEEe--CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEE
Confidence            5688888988763  334677886541    0   2345788999999999999988666555 2222212  2357899


Q ss_pred             EccCC--CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          172 FEKLG--PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       172 ~e~~~--~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      +|-++  .+|.+++........+......++.+++..+.-||+.|+.|+|+.+.|||++..|
T Consensus       104 Te~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g  165 (216)
T PRK09902        104 TEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEG  165 (216)
T ss_pred             EEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCC
Confidence            99885  6999998775544567888889999999999999999999999999999996433

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.94  E-value=2.4e-08  Score=88.26  Aligned_cols=113  Identities=29%  Similarity=0.328  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcceeEecceecc-CCeEEEEEccC-C-CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Q 013941          132 REAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-RNHICIVFEKL-G-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA  208 (433)
Q Consensus       132 ~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-~~~~~lv~e~~-~-~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~  208 (433)
                      .....+|...+..+...+|..|..+.+...-.. ....++|+|++ + .+|.+++....  ..+......++.+++..+.
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~--~~~~~~~~~ll~~l~~~i~  132 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWE--QLDPSQRRELLRALARLIA  132 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhc--ccchhhHHHHHHHHHHHHH
Confidence            356788999999999999877766665433111 13568999999 4 37999988644  3677788899999999999


Q ss_pred             HHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcc
Q 013941          209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF  270 (433)
Q Consensus       209 ~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~  270 (433)
                      -||.+||+|+|+++.|||+..++                        ....+.|+||+-+..
T Consensus       133 ~lH~~gi~H~Dl~~~NILv~~~~------------------------~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  133 KLHDAGIYHGDLNPSNILVDPDD------------------------GQYRFYLIDLDRMRF  170 (206)
T ss_pred             HHHHCcCCCCCCCcccEEEeCCC------------------------CceeEEEEcchhcee
Confidence            99999999999999999997643                        234688999986653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.88  E-value=3e-08  Score=92.66  Aligned_cols=195  Identities=16%  Similarity=0.186  Sum_probs=122.6

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHH-hCCCCCcceeEecc--eecc-CCeEEEE
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRN--WFDY-RNHICIV  171 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~--~~~~-~~~~~lv  171 (433)
                      ..+.||+|+-+.+|-.-...   ..+-|++..-....+.-  .+..|...- |+.+ ...++--..  +..+ +..+.+.
T Consensus        15 ~gr~LgqGgea~ly~l~e~~---d~VAKIYh~Pppa~~aq--k~a~la~~p~~p~~-~~rvaWPqa~L~G~~~~~~iGfl   88 (637)
T COG4248          15 PGRPLGQGGEADLYTLGEVR---DQVAKIYHAPPPAAQAQ--KVAELAATPDAPLL-NYRVAWPQATLHGGRRGKVIGFL   88 (637)
T ss_pred             CCccccCCccceeeecchhh---chhheeecCCCchHHHH--HHHHhccCCCCcch-hhhhcccHHHhhCCCccceeEEe
Confidence            35789999999999764222   23568876433221111  112222211 1111 000111111  0112 2337889


Q ss_pred             EccC-CC-CHHHHHH----hcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          172 FEKL-GP-SLYDFLR----KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       172 ~e~~-~~-~L~~~l~----~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      |..+ |. .+.++++    ++......+....+.++.|+.+.+.||+.|.+-+|+.++|+|+++++.+.+.|-.      
T Consensus        89 mP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVdsD------  162 (637)
T COG4248          89 MPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSD------  162 (637)
T ss_pred             cccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEccc------
Confidence            9988 43 4455543    2233457789999999999999999999999999999999999988877665532      


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhh-----CCCCCccchHHHHHHHHHHHHhC-CCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSG-EALFQ  319 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwSlG~il~el~~g-~~pf~  319 (433)
                                   ...|++-|.      .....+|...|.+||.-.     +-.-+...|.|.||+++|+++.| +.||.
T Consensus       163 -------------sfqi~~ng~------~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPys  223 (637)
T COG4248         163 -------------SFQINANGT------LHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYS  223 (637)
T ss_pred             -------------ceeeccCCc------eEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCC
Confidence                         122222221      111237788899999865     22346789999999999999986 99998


Q ss_pred             CC
Q 013941          320 TH  321 (433)
Q Consensus       320 ~~  321 (433)
                      +.
T Consensus       224 GI  225 (637)
T COG4248         224 GI  225 (637)
T ss_pred             cc
Confidence            64

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.85  E-value=7.1e-08  Score=83.97  Aligned_cols=131  Identities=17%  Similarity=0.227  Sum_probs=88.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhH----------HHHHHHHHHHHHHHhCCCCCc---ce
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR----------EAAMIEIDVLQRLARHDIGGT---RC  155 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~----------~~~~~E~~~l~~l~~~~i~~~---~~  155 (433)
                      .+.++|.+.+.+-......|.+..  .+|+.+++|..+......          ....+++..+.++...++...   .+
T Consensus        28 i~~~~~~~~kv~k~~~r~~ValIe--i~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl  105 (229)
T PF06176_consen   28 ILDNNYKIIKVFKNTKRNYVALIE--IDGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYL  105 (229)
T ss_pred             HHhCCceEEEeecCCCccEEEEEE--ECCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCcccccccee
Confidence            446789999999888888887775  567889999876432111          224456666667766554322   22


Q ss_pred             eEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       156 v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      +...-.+......+|||||+ |..|.+...      +++    .+...|..++.-||+.|++|+|..|.|++++.++
T Consensus       106 ~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~------i~e----~~~~ki~~~ikqlH~~G~~HGD~hpgNFlv~~~~  172 (229)
T PF06176_consen  106 AAEKKIFRYTSSYVLLMEYIEGVELNDIED------IDE----DLAEKIVEAIKQLHKHGFYHGDPHPGNFLVSNNG  172 (229)
T ss_pred             eeeeeeccceeEEEEEEEEecCeecccchh------cCH----HHHHHHHHHHHHHHHcCCccCCCCcCcEEEECCc
Confidence            22222333445678999999 777766532      333    2445677889999999999999999999997544

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.83  E-value=3.6e-08  Score=87.56  Aligned_cols=123  Identities=28%  Similarity=0.293  Sum_probs=89.1

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccc-----------------------hhhHHHHHHHHHHHHHHHhCCC
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-----------------------NKYREAAMIEIDVLQRLARHDI  150 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----------------------~~~~~~~~~E~~~l~~l~~~~i  150 (433)
                      +.+..+||-|--|.||.|.+. .|.++|||.-+..                       .-.+..+.+|.++|++|...+.
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~-~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~  171 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDP-KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGV  171 (304)
T ss_pred             HhhccccccCccceEEEEECC-CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCC
Confidence            566789999999999999875 6788999975310                       0123457789999999977633


Q ss_pred             CCcceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       151 ~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                      .-   .+.++    -+..++|||+. |..|...       ++..+....++..|+.-+..+-..||||+|+.+-||+++.
T Consensus       172 ~V---P~P~~----~nRHaVvMe~ieG~eL~~~-------r~~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~  237 (304)
T COG0478         172 KV---PKPIA----WNRHAVVMEYIEGVELYRL-------RLDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTE  237 (304)
T ss_pred             CC---CCccc----cccceeeeehcccceeecc-------cCcccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEec
Confidence            11   22222    35568999999 6555432       2235556677777777777777999999999999999987


Q ss_pred             CC
Q 013941          230 AE  231 (433)
Q Consensus       230 ~~  231 (433)
                      +|
T Consensus       238 dg  239 (304)
T COG0478         238 DG  239 (304)
T ss_pred             CC
Confidence            65

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.66  E-value=5.1e-07  Score=79.55  Aligned_cols=137  Identities=19%  Similarity=0.169  Sum_probs=94.7

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchh-------------------------hHHHHHHHHHHHHHHHhCCCC
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------------------------YREAAMIEIDVLQRLARHDIG  151 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------------------------~~~~~~~E~~~l~~l~~~~i~  151 (433)
                      ...|++|--+.||+|.. .++..+|+|+++....                         ......+|+..|.++...++.
T Consensus        53 ~g~istGKEA~Vy~a~~-~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVr  131 (268)
T COG1718          53 VGCISTGKEANVYLAET-GDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVR  131 (268)
T ss_pred             EeeecCCcceEEEeecc-CCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            34777888889999974 5678899999853110                         112345699999999887763


Q ss_pred             CcceeEecceeccCCeEEEEEccCCCCH--HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEe
Q 013941          152 GTRCVQIRNWFDYRNHICIVFEKLGPSL--YDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLV  228 (433)
Q Consensus       152 ~~~~v~~~~~~~~~~~~~lv~e~~~~~L--~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~  228 (433)
                      .|   +-+.+.    ...|||||+|...  .-.|..-   .+....+..+..++++.+.-|-. .|+||+||..-|||+.
T Consensus       132 vP---~Pi~~~----~nVLvMEfIg~~g~pAP~LkDv---~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~  201 (268)
T COG1718         132 VP---EPIAFR----NNVLVMEFIGDDGLPAPRLKDV---PLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH  201 (268)
T ss_pred             CC---Cceeec----CCeEEEEeccCCCCCCCCcccC---CcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE
Confidence            33   222222    2479999995431  1111111   23344688888999999998887 8999999999999996


Q ss_pred             eCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcccc
Q 013941          229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH  272 (433)
Q Consensus       229 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~  272 (433)
                      .                            ..+.++|||.|....
T Consensus       202 ~----------------------------~~p~iID~~QaV~~~  217 (268)
T COG1718         202 D----------------------------GEPYIIDVSQAVTID  217 (268)
T ss_pred             C----------------------------CeEEEEECccccccC
Confidence            3                            257999999886543

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.59  E-value=1.6e-07  Score=93.03  Aligned_cols=138  Identities=18%  Similarity=0.219  Sum_probs=84.1

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchh-----------------------------------hH------HHHH
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-----------------------------------YR------EAAM  136 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----------------------------------~~------~~~~  136 (433)
                      ..|+.++-|.||+|+.. +|+.||||+.+.+-.                                   ..      -.+.
T Consensus       131 ~PiAsASIaQVH~A~L~-sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~  209 (517)
T COG0661         131 EPIASASIAQVHRAVLK-SGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYR  209 (517)
T ss_pred             CchhhhhHhhheeEEec-CCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHH
Confidence            57899999999999964 599999999853110                                   00      1233


Q ss_pred             HHHHHHHHHHhCCCCCcceeEecc-eeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q 013941          137 IEIDVLQRLARHDIGGTRCVQIRN-WFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR  214 (433)
Q Consensus       137 ~E~~~l~~l~~~~i~~~~~v~~~~-~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~  214 (433)
                      +|...+.++.+..-..+. +++-. +++..+.-.|+|||+ |..+.+...... ..++...+.....++  -+..+-..|
T Consensus       210 ~EA~n~~~~~~nf~~~~~-v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~~~~~--f~~q~~~dg  285 (517)
T COG0661         210 REAANAERFRENFKDDPD-VYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKS-AGIDRKELAELLVRA--FLRQLLRDG  285 (517)
T ss_pred             HHHHHHHHHHHHcCCCCC-eEeceeehhccCCcEEEEEeeCCEecccHHHHHh-cCCCHHHHHHHHHHH--HHHHHHhcC
Confidence            466666666553323333 33333 334567789999999 778887743221 134433332222221  133334589


Q ss_pred             cEecCCCCCcEEEeeCCcccccCccc
Q 013941          215 LIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       215 ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      +.|.|.+|.||++..+|.+.+-|||+
T Consensus       286 ffHaDpHpGNi~v~~~g~i~~lDfGi  311 (517)
T COG0661         286 FFHADPHPGNILVRSDGRIVLLDFGI  311 (517)
T ss_pred             ccccCCCccceEEecCCcEEEEcCcc
Confidence            99999999999998776444444443

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.57  E-value=7.3e-09  Score=101.34  Aligned_cols=247  Identities=16%  Similarity=0.058  Sum_probs=166.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      .-|...+-+++|+++.+++.+...+...+ .+++...    ....-++++|.+++|||.    .+..++.++.+...+++
T Consensus       242 kws~~fh~fvK~altknpKkRptaeklL~-h~fvs~~----l~~rl~~eLLdK~n~P~~----~v~~~~d~~~E~~~~i~  312 (829)
T KOG0576|consen  242 KWSEFFHNFVKGALTKNPKKRPTAEKLLQ-HPFVSQT----LSRRLAIELLDKVNNPNP----VVRYLEDYDGEDYLWIP  312 (829)
T ss_pred             cchHHHHHHHHHHhcCCCccCCChhhhee-ceeeccc----hhhHHHHHHHHHccCCCC----cccccccCCcccccchh
Confidence            34667788999999999999876665544 6766443    344558899999999982    27777777888899999


Q ss_pred             EccC-CC-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          172 FEKL-GP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       172 ~e~~-~~-~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      |+++ ++ +-....... .-.+..-+...+.+.-+++|+++|+.-=+|+|    ||+..+                    
T Consensus       313 ~~i~s~~rs~~~~~~~s-e~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d----~~l~s~--------------------  367 (829)
T KOG0576|consen  313 MRICSTGRSSALEMTVS-EIALEQYQFAYPLRKETRPLAELHSSYKVHRD----NILGSE--------------------  367 (829)
T ss_pred             hhhhcCCccccccCChh-hHhhhhhhhhhhhhhhcccccccccccccCcc----cccccc--------------------
Confidence            9999 44 222111100 01234445566677778899999998778998    887543                    


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL  327 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~  327 (433)
                              ...++.||+........  ..+..+|+.++|||+...+.+....|.|++|+--.++.-|.+|-......   
T Consensus       368 --------~~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~~P~~~---  436 (829)
T KOG0576|consen  368 --------EEVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRSSPPAV---  436 (829)
T ss_pred             --------cccccccccCCcccCcccccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCCCCccc---
Confidence                    34678888877665544  55678999999999999999999999999998766777676665431000   


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH-HHHHHHhcccC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL-IDLLQGLLRYD  406 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~li~~~L~~d  406 (433)
                                              .+.      ...+.........               ...+... .++...|+..-
T Consensus       437 ------------------------~~~------~g~~p~s~~L~~~---------------~aw~~~~~~~~~~~~~~g~  471 (829)
T KOG0576|consen  437 ------------------------LPM------IGNGPNSPMLTDK---------------SAWSPVFHRDFPAPCLNGL  471 (829)
T ss_pred             ------------------------cCC------CCCCCCccccchh---------------hhcCcccccCCcccccCCC
Confidence                                    000      0000000000000               0001111 14777899999


Q ss_pred             CCCCCCHHHHhcCCCCCCCccc
Q 013941          407 PAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       407 P~~R~ta~ell~hp~f~~~~~~  428 (433)
                      |..|++...++-|.+|.++..+
T Consensus       472 P~~pkv~mgacfsKvfngCpl~  493 (829)
T KOG0576|consen  472 PPTPKVHMGACFSKVFNGCPLR  493 (829)
T ss_pred             CCCCcchhhHHHHHHhccCccc
Confidence            9999999999999999987654

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.56  E-value=1.1e-06  Score=79.28  Aligned_cols=82  Identities=21%  Similarity=0.268  Sum_probs=58.7

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-  175 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-  175 (433)
                      ++.|+.|..+.||++....  ..+++|+.... .......+|..+++.+...++..|.++............+++|+++ 
T Consensus         2 i~~l~~G~~n~~~~v~~~~--~~~vlK~~~~~-~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~   78 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD--GRYVLKFYRPP-DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIP   78 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT--SEEEEEEESSH-HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEES
T ss_pred             CccCCCCCeeeEEEEEECC--cEEEEEEeCCC-CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEec
Confidence            4678999999999998654  47999997655 4556788899999999988763344433222223345689999999 


Q ss_pred             CCCHHH
Q 013941          176 GPSLYD  181 (433)
Q Consensus       176 ~~~L~~  181 (433)
                      |..+..
T Consensus        79 g~~~~~   84 (239)
T PF01636_consen   79 GRPLDD   84 (239)
T ss_dssp             SEEHHH
T ss_pred             cccccc
Confidence            766666

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=98.52  E-value=3.5e-06  Score=73.29  Aligned_cols=124  Identities=17%  Similarity=0.291  Sum_probs=94.5

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch-----------------hhHHHHHHHHHHHHHHH-hCCCCCcceeEec
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-----------------KYREAAMIEIDVLQRLA-RHDIGGTRCVQIR  159 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----------------~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~  159 (433)
                      ..||+|+.-.||.--   .....+||+.....                 ....+..+|+.....+. ..++...++.+++
T Consensus         7 ~~i~~G~~R~cy~HP---~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~   83 (199)
T PF10707_consen    7 DLIAQGGERDCYQHP---DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFY   83 (199)
T ss_pred             cccccCCCceEEECC---CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEe
Confidence            579999999999642   33346889987544                 23466778999888888 8888888899999


Q ss_pred             ceeccCCeEEEEEccC-C------CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          160 NWFDYRNHICIVFEKL-G------PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       160 ~~~~~~~~~~lv~e~~-~------~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      |+.+++--..+|+|.. +      .+|.+++...   .++. ...   ..+-.-.+||-+.+|+.+|++|.||++...+
T Consensus        84 G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~---~~~~-~~~---~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~  155 (199)
T PF10707_consen   84 GFVETNLGLGLVVELIRDADGNISPTLEDYLKEG---GLTE-ELR---QALDEFKRYLLDHHIVIRDLNPHNIVVQRRD  155 (199)
T ss_pred             EEEecCCceEEEEEEEECCCCCcCccHHHHHHcC---CccH-HHH---HHHHHHHHHHHHcCCeecCCCcccEEEEecC
Confidence            9999998889999975 2      3788888654   3555 333   3333445688899999999999999997754

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.49  E-value=2e-06  Score=77.06  Aligned_cols=72  Identities=15%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-C
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-G  176 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~  176 (433)
                      ..||+|..+.||+.   . +..+++|+..... ......+|.+++..+...++..|.   .+.+.+..+...+|||++ |
T Consensus         7 ~~i~~G~t~~~y~~---~-~~~~VlR~~~~~~-~~~~i~~E~~~l~~l~~~glpvP~---~~~~~~~~~~~glv~e~i~G   78 (226)
T TIGR02172         7 TQTGEGGNGESYTH---K-TGKWMLKLYNPGF-DKETIKREFDASRKVFSLGIPTPH---PFDLVEDGGRLGLIYELIVG   78 (226)
T ss_pred             eeecCCCCcceeEe---c-CCCEEEEeCCCCC-CHHHHHHHHHHHHHHHHcCCCCCc---eEEEEecCCeeeeeeeecCC
Confidence            57899999999984   2 4457899876533 335578899999999876664444   445555667788999999 5


Q ss_pred             C
Q 013941          177 P  177 (433)
Q Consensus       177 ~  177 (433)
                      .
T Consensus        79 ~   79 (226)
T TIGR02172        79 K   79 (226)
T ss_pred             c
Confidence            4

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=98.42  E-value=6.6e-06  Score=70.99  Aligned_cols=118  Identities=21%  Similarity=0.292  Sum_probs=84.0

Q ss_pred             CCeEEecccccccc-EEEEEEEecCCCcEEEEEEecc----c--------h----------hhHHHHHHHHHHHHHHHhC
Q 013941           92 PRYRILSKMGEGTF-GQVVECFDNEKKELVAIKIVRS----I--------N----------KYREAAMIEIDVLQRLARH  148 (433)
Q Consensus        92 ~~y~~~~~lg~G~~-g~V~~~~~~~~~~~vavK~~~~----~--------~----------~~~~~~~~E~~~l~~l~~~  148 (433)
                      ..++.++.||.|.. |.||+++  -.|+.||||+++.    .        .          .....+..|.+...+|+..
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~--I~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~  114 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVE--IDGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEA  114 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEE--ECCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhc
Confidence            45899999999999 9999997  5677999999431    0        0          1123466788888888876


Q ss_pred             CCCCcceeEecceeccC------------------CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Q 013941          149 DIGGTRCVQIRNWFDYR------------------NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF  209 (433)
Q Consensus       149 ~i~~~~~v~~~~~~~~~------------------~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~  209 (433)
                      +-.+.-.|++++|..-.                  ....||.||. ...           .+....    +.+|++-|..
T Consensus       115 ~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-----------~~~~~~----~~~~~~dl~~  179 (207)
T PF13095_consen  115 GREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-----------PLQIRD----IPQMLRDLKI  179 (207)
T ss_pred             cccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-----------ccchhH----HHHHHHHHHH
Confidence            54333348888887321                  1346788876 322           123333    4567788899


Q ss_pred             HHhCCcEecCCCCCcEE
Q 013941          210 MHELRLIHTDLKPENIL  226 (433)
Q Consensus       210 LH~~~ivHrDikp~NIl  226 (433)
                      +|..||+-+|+++.|..
T Consensus       180 ~~k~gI~~~Dv~~~ny~  196 (207)
T PF13095_consen  180 LHKLGIVPRDVKPRNYR  196 (207)
T ss_pred             HHHCCeeeccCcccccc
Confidence            99999999999999998

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.33  E-value=6.2e-06  Score=68.82  Aligned_cols=131  Identities=24%  Similarity=0.275  Sum_probs=90.1

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      -++.+.|++|.+|.||++..  .|..+|+|+-+. +..+..+..|+++|..+.-.++.    .+++.+..    .++.||
T Consensus        24 ~~v~~~L~KG~~s~Vyl~~~--~~~~~a~Kvrr~-ds~r~~l~kEakiLeil~g~~~~----p~vy~yg~----~~i~me   92 (201)
T COG2112          24 LRVEKELAKGTTSVVYLGEW--RGGEVALKVRRR-DSPRRNLEKEAKILEILAGEGVT----PEVYFYGE----DFIRME   92 (201)
T ss_pred             hhhhhhhhcccccEEEEeec--cCceEEEEEecC-CcchhhHHHHHHHHHHhhhcCCC----ceEEEech----hhhhhh
Confidence            45678999999999999985  455799998654 55667888999999999876652    33443332    245599


Q ss_pred             cC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCC--CcEEEeeCCcccccCccccccCCCCCCc
Q 013941          174 KL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKP--ENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp--~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |. |..|.+.-...     .    +.-...++.+---|-..||-|+.|.-  .||++.                      
T Consensus        93 ~i~G~~L~~~~~~~-----~----rk~l~~vlE~a~~LD~~GI~H~El~~~~k~vlv~----------------------  141 (201)
T COG2112          93 YIDGRPLGKLEIGG-----D----RKHLLRVLEKAYKLDRLGIEHGELSRPWKNVLVN----------------------  141 (201)
T ss_pred             hhcCcchhhhhhcc-----c----HHHHHHHHHHHHHHHHhccchhhhcCCceeEEec----------------------
Confidence            99 76887764321     1    22234455555556678999999864  356552                      


Q ss_pred             ccCCCCCCCeeeecCCCCcccc
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEH  272 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~  272 (433)
                            +..+.|+||..|++..
T Consensus       142 ------~~~~~iIDFd~At~k~  157 (201)
T COG2112         142 ------DRDVYIIDFDSATFKK  157 (201)
T ss_pred             ------CCcEEEEEccchhhcc
Confidence                  2258999999887543

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=9.5e-06  Score=85.25  Aligned_cols=207  Identities=25%  Similarity=0.362  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 013941          134 AAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE  212 (433)
Q Consensus       134 ~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  212 (433)
                      ....|+..+.++.|.|.+.+....+...+.. -...+..++| ..++...++...  ..+....+.+..+++.||.|+|+
T Consensus       228 ~~E~e~~~l~k~~~~n~~~~~~~~le~~~~g-~~~~v~~~~~s~~~~~~~~q~v~--~i~~~~~r~~~~~~~~GL~~~h~  304 (1351)
T KOG1035|consen  228 TTEIELESLSKIAHDNLGGYFVYGLERLFRG-IVLDVLQEICSKVELRSLLQSVG--SIPLETLRILHQKLLEGLAYLHS  304 (1351)
T ss_pred             HHHHHHHHHHhhccccccceeEEeehhhcch-HHHHHHHhhcCccchHHHHhhcc--ccCHHHHHHHHHHHhhhHHHHHH
Confidence            3445777788888988854444444333322 1233456678 778888888765  78899999999999999999999


Q ss_pred             CCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeee--cCCCCccccCCCcc--cccCCcccchh
Q 013941          213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI--DFGSTTFEHQDHSY--VVSTRHYRAPE  288 (433)
Q Consensus       213 ~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~--Dfg~a~~~~~~~~~--~~gt~~y~aPE  288 (433)
                      .       +..|+.+.......                 ...+....+..+  ||+.+.........  ..-+..+.++|
T Consensus       305 ~-------~l~~v~L~~s~~~~-----------------~~~~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e  360 (1351)
T KOG1035|consen  305 L-------SLEHVVLSASSSKE-----------------STVDGEGVVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADE  360 (1351)
T ss_pred             h-------ccceeEEecccccc-----------------cccCccceeecchhhhcccccCCCcccchhhcCcccccccc
Confidence            8       34445443321000                 001222233333  77776655443322  23455677888


Q ss_pred             hhhCCCCCc--cchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCC
Q 013941          289 VILGLGWNY--PCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGAT  366 (433)
Q Consensus       289 ~~~~~~~~~--~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (433)
                      ......+..  ..|+|.+|..+..+..|..+-.....      ....+                                
T Consensus       361 ~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~~~~~------~~~~l--------------------------------  402 (1351)
T KOG1035|consen  361 DLKENTAKKSRLTDLWCLGLLLLQLSQGEDISEKSAV------PVSLL--------------------------------  402 (1351)
T ss_pred             ccccccchhhhhhHHHHHHHHHhhhhhcCcccccccc------hhhhh--------------------------------
Confidence            877665544  47999999999998887543311000      00000                                


Q ss_pred             chhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          367 SRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                                         .  ........+.+.+|+.-++++|+++.+++.|+|.+-..
T Consensus       403 -------------------~--~~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~~f~~~~~  441 (1351)
T KOG1035|consen  403 -------------------D--VLSTSELLDALPKCLDEDSEERLSALELLTHPFLRFPT  441 (1351)
T ss_pred             -------------------c--cccchhhhhhhhhhcchhhhhccchhhhhhchhccccc
Confidence                               0  00011567889999999999999999999999988653

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.18  E-value=2.4e-05  Score=71.21  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=51.2

Q ss_pred             ccccccc-EEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-C
Q 013941           99 KMGEGTF-GQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-G  176 (433)
Q Consensus        99 ~lg~G~~-g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~  176 (433)
                      .|..|.+ +.||++...  +..+.+|+.....  .....+|+.+++.+... +.   +.+++.+....+..++|||++ |
T Consensus         5 ~~~~g~~~~~v~~~~~~--~~~~~vk~~~~~~--~~~~~~E~~~l~~l~~~-~~---vP~v~~~~~~~~~~~lv~e~i~G   76 (244)
T cd05150           5 RVTEGQSGATVYRLDGK--NPGLYLKIAPSGP--TYELEREAERLRWLAGK-LP---VPEVIDYGSDDGRAWLLTSAVPG   76 (244)
T ss_pred             ecCCCCCcCeEEEEcCC--CCcEEEEecCCCc--ccchHHHHHHHHHHHhc-CC---CCeEEEEEecCCccEEEEEeeCC
Confidence            3444544 789999743  3678899876543  34567899999999765 43   345556665556789999999 7


Q ss_pred             CCHHH
Q 013941          177 PSLYD  181 (433)
Q Consensus       177 ~~L~~  181 (433)
                      .+|..
T Consensus        77 ~~l~~   81 (244)
T cd05150          77 VPAAA   81 (244)
T ss_pred             ccHhH
Confidence            66653

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=98.16  E-value=2.3e-05  Score=70.81  Aligned_cols=76  Identities=14%  Similarity=0.073  Sum_probs=46.1

Q ss_pred             ccccccccE-EEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhC-CCCCcceeEecceeccCCeEEEEEccC
Q 013941           98 SKMGEGTFG-QVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH-DIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus        98 ~~lg~G~~g-~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~-~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      +.|+.|+.. .||+..     ..+++|+.+. ........+|.+++..+... .+..|.++..-...+.....+++|+++
T Consensus         3 ~~~~~gG~~n~vy~~~-----~~~VlR~~~~-~~~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~l~~~i   76 (235)
T cd05155           3 EPVDSGGTDNATFRLG-----DDMSVRLPSA-AGYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWL   76 (235)
T ss_pred             eeccCCCcccceEEcC-----CceEEEcCCc-cchHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceEEEEee
Confidence            467777766 488762     2477887654 22345788899999999753 444444333211111123458899998


Q ss_pred             -CCCH
Q 013941          176 -GPSL  179 (433)
Q Consensus       176 -~~~L  179 (433)
                       |.++
T Consensus        77 ~G~~l   81 (235)
T cd05155          77 EGETA   81 (235)
T ss_pred             cCCCC
Confidence             6555

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PLN02876 acyl-CoA dehydrogenase

Probab=98.12  E-value=4.8e-05  Score=81.35  Aligned_cols=78  Identities=15%  Similarity=0.126  Sum_probs=53.3

Q ss_pred             eccccccccEEEEEEEecCCC--cEEEEEEeccch--hhHHHHHHHHHHHHHHH-hCCCCCcceeEecceeccC---CeE
Q 013941           97 LSKMGEGTFGQVVECFDNEKK--ELVAIKIVRSIN--KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYR---NHI  168 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~--~~vavK~~~~~~--~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~---~~~  168 (433)
                      ++.|+.|.++.+|+......+  ..+++|+.....  .....+.+|+.+++.+. |.++..|   +++.++.+.   +..
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP---~v~~~~~d~~v~G~~  119 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVP---KVYCLCTDASVIGTA  119 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCC---cEEEEecCCCcCCCc
Confidence            577899999999998764432  467888764322  22346789999999997 5665444   444444442   467


Q ss_pred             EEEEccC-CC
Q 013941          169 CIVFEKL-GP  177 (433)
Q Consensus       169 ~lv~e~~-~~  177 (433)
                      |+||||+ |.
T Consensus       120 flVME~v~G~  129 (822)
T PLN02876        120 FYIMEYLEGR  129 (822)
T ss_pred             eEEEEecCCc
Confidence            8999999 54

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=7.8e-05  Score=69.43  Aligned_cols=139  Identities=24%  Similarity=0.274  Sum_probs=100.0

Q ss_pred             EEeccccccccEEEEEEEecCCCcEEEEEEeccc---------------------------hhhHHHHHHHHHHHHHHHh
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---------------------------NKYREAAMIEIDVLQRLAR  147 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---------------------------~~~~~~~~~E~~~l~~l~~  147 (433)
                      .+-..|..|--+.||.|.. .+|..+|||+++-+                           ....-....|+..|++|..
T Consensus       147 ~inGCiSTGKEANVYHat~-~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~  225 (520)
T KOG2270|consen  147 EINGCISTGKEANVYHATE-EDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNN  225 (520)
T ss_pred             ecccccccCccceeEeeec-CCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHh
Confidence            3456788888899999984 66777999998410                           0112345679999999999


Q ss_pred             CCCCCcceeEecceeccCCeEEEEEccCCCCH--HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH-hCCcEecCCCCCc
Q 013941          148 HDIGGTRCVQIRNWFDYRNHICIVFEKLGPSL--YDFLRKNSYRSFPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPEN  224 (433)
Q Consensus       148 ~~i~~~~~v~~~~~~~~~~~~~lv~e~~~~~L--~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH-~~~ivHrDikp~N  224 (433)
                      .+|..|--+-+..       ..|||+|+|.+=  .-.|..   -.++...+..+-.|++.-+.-|- .+++||.||.--|
T Consensus       226 aGIP~PePIlLk~-------hVLVM~FlGrdgw~aPkLKd---~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN  295 (520)
T KOG2270|consen  226 AGIPCPEPILLKN-------HVLVMEFLGRDGWAAPKLKD---ASLSTSKARELYQQCVRIMRRLYQKCRLVHADLSEFN  295 (520)
T ss_pred             cCCCCCCceeeec-------ceEeeeeccCCCCcCccccc---ccCChHHHHHHHHHHHHHHHHHHHHhceeccchhhhh
Confidence            9886665444432       569999996432  222222   25778888888889888888775 5789999999999


Q ss_pred             EEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcccc
Q 013941          225 ILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH  272 (433)
Q Consensus       225 Ili~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~  272 (433)
                      +|+-.                            +.+.++|-+-+....
T Consensus       296 ~Lyhd----------------------------G~lyiIDVSQSVE~D  315 (520)
T KOG2270|consen  296 LLYHD----------------------------GKLYIIDVSQSVEHD  315 (520)
T ss_pred             heEEC----------------------------CEEEEEEccccccCC
Confidence            99843                            358899988775443

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.02  E-value=7.4e-05  Score=74.17  Aligned_cols=145  Identities=17%  Similarity=0.187  Sum_probs=87.1

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccch--------------------------------hhHH------HHHHHH
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--------------------------------KYRE------AAMIEI  139 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--------------------------------~~~~------~~~~E~  139 (433)
                      +.||.-+.|.||+|+.+. |+.||||+-+..-                                +..+      .+.+|.
T Consensus       167 ~piaaASlaQVhrA~L~~-G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKN-GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             chhhhcchhheEEEEecC-CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            578999999999999755 9999999875311                                0001      133455


Q ss_pred             HHHHHHHhCCCCCcc---eeEeccee-ccCCeEEEEEccC-CCCHH--HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 013941          140 DVLQRLARHDIGGTR---CVQIRNWF-DYRNHICIVFEKL-GPSLY--DFLRKNSYRSFPIDLVRELGRQLLESVAFMHE  212 (433)
Q Consensus       140 ~~l~~l~~~~i~~~~---~v~~~~~~-~~~~~~~lv~e~~-~~~L~--~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  212 (433)
                      +...+..+. ..+..   -|.+-.++ +....-.|+|||| |..+.  +.+.+.   .++...+...+.+..  +.-|-.
T Consensus       246 ~Nae~~~~~-f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~---gi~~~~i~~~l~~~~--~~qIf~  319 (538)
T KOG1235|consen  246 KNAERFREN-FKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKR---GISPHDILNKLVEAY--LEQIFK  319 (538)
T ss_pred             HhHHHHHHH-HHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHc---CCCHHHHHHHHHHHH--HHHHHh
Confidence            444444321 11111   12222222 3345688999999 76554  344454   366554443333322  223335


Q ss_pred             CCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcccc
Q 013941          213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH  272 (433)
Q Consensus       213 ~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~  272 (433)
                      .|++|+|-.|.||++..++                       ..+..+.+-|||+.....
T Consensus       320 ~GffHaDPHPGNilv~~~~-----------------------~~~~~ivllDhGl~~~is  356 (538)
T KOG1235|consen  320 TGFFHADPHPGNILVRPNP-----------------------EGDEEIVLLDHGLYAVIS  356 (538)
T ss_pred             cCCccCCCCCCcEEEecCC-----------------------CCCccEEEEccccccccc
Confidence            7899999999999997543                       245578999999876543

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=98.00  E-value=8.8e-05  Score=67.01  Aligned_cols=75  Identities=15%  Similarity=0.329  Sum_probs=49.7

Q ss_pred             eccccccccEEEEEEEecC-CCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941           97 LSKMGEGTFGQVVECFDNE-KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ++.|..|-...+|++.... .++.|++|+........-...+|+.+++.+...++ .   .+++..+..    .+||||+
T Consensus         3 i~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~~~~d~~~E~~~~~~l~~~gl-~---P~v~~~~~~----~~l~e~i   74 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTELIIDRERELRIHKLLSKHGL-A---PKLYATFQN----GLIYEFI   74 (235)
T ss_pred             EEEcCCcccceEEEEEcCCCCCCeEEEEEccCCccceecHHHHHHHHHHHHhCCC-C---CeEEEEeCC----cEEEEee
Confidence            4677888889999997543 35679999876433322334579999999987766 2   333333322    3799999


Q ss_pred             -CCCH
Q 013941          176 -GPSL  179 (433)
Q Consensus       176 -~~~L  179 (433)
                       |.++
T Consensus        75 ~G~~l   79 (235)
T cd05157          75 PGRTL   79 (235)
T ss_pred             CCCcC
Confidence             6554

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=97.86  E-value=0.00044  Score=66.83  Aligned_cols=75  Identities=20%  Similarity=0.217  Sum_probs=51.3

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccc--------hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--------NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--------~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+.||.|.+..||++.+...++.|+||.-...        ....+....|.+.|+.+....  ..++.+++.+  +.+..
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~--p~~VPkV~~~--D~~~~  106 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYV--PDLVPKVYHY--DEELA  106 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhC--CCCCCeEEEE--CCCCC
Confidence            46899999999999998654467999974311        123456677888888876431  1234555554  33557


Q ss_pred             EEEEccC
Q 013941          169 CIVFEKL  175 (433)
Q Consensus       169 ~lv~e~~  175 (433)
                      ++|||++
T Consensus       107 ~lVME~L  113 (401)
T PRK09550        107 VTVMEDL  113 (401)
T ss_pred             EEEEecC
Confidence            8999999

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.86  E-value=8.4e-05  Score=69.70  Aligned_cols=79  Identities=14%  Similarity=0.123  Sum_probs=52.5

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecc---eeccCCeEEEEEc
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRN---WFDYRNHICIVFE  173 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~---~~~~~~~~~lv~e  173 (433)
                      ++.|..|....+|++..  .+..+++|+...  ........|+.++..+.+.++..+.++...+   +....+..++|++
T Consensus        19 i~~i~~G~~n~~y~v~~--~~~~~vLr~~~~--~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~   94 (296)
T cd05153          19 FEGISAGIENTNYFVTT--DSGRYVLTLFEK--VSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVE   94 (296)
T ss_pred             eecccCccccceEEEEe--CCCcEEEEEcCC--CChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEE
Confidence            56788888889999864  334689998764  3345677899999999887664333332211   1123456789999


Q ss_pred             cC-CCCH
Q 013941          174 KL-GPSL  179 (433)
Q Consensus       174 ~~-~~~L  179 (433)
                      ++ |..+
T Consensus        95 ~i~G~~~  101 (296)
T cd05153          95 FLAGEHL  101 (296)
T ss_pred             eCCCCCC
Confidence            99 6543

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=97.84  E-value=9.7e-05  Score=71.59  Aligned_cols=90  Identities=22%  Similarity=0.235  Sum_probs=63.2

Q ss_pred             ccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHH
Q 013941          297 YPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK  376 (433)
Q Consensus       297 ~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (433)
                      +++||||+|.++.++..|...+......+.+..+.... ..+.......+.+                            
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k~~-~~d~~~~~~a~e~----------------------------  160 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELTESEYLEILLKYY-TDDQELLSTAMEH----------------------------  160 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHH----------------------------
Confidence            59999999999999999998887766666666555432 2221111111111                            


Q ss_pred             hcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                               ...-..+..+.+++.+|+-..|..||...++.+|+-|++
T Consensus       161 ---------~~~~~~d~~~~~~~~~c~~~~~~ir~l~~~~~k~~i~~e  199 (725)
T KOG1093|consen  161 ---------LIQLLADKKRLPLLKKCLWLEPIIRPLPMELSKRCSFTE  199 (725)
T ss_pred             ---------HHHHhhhHhHHHHhccCCccccccccchhHHhcCccHHH
Confidence                     011123557889999999999999999999999988764

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.82  E-value=0.00012  Score=67.06  Aligned_cols=71  Identities=13%  Similarity=0.073  Sum_probs=46.1

Q ss_pred             cccccccEEEEEEEecCCCcEEEEEEeccchhhH-HHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-C
Q 013941           99 KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-EAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-G  176 (433)
Q Consensus        99 ~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~  176 (433)
                      .+..|-.+.+|+..  .+++.+++|+........ -...+|..+++.+...++ .|.++.   ...    -++||||+ |
T Consensus         3 ~~~~G~tn~~y~~~--~~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~-~P~~i~---~~~----~~~v~e~i~G   72 (256)
T TIGR02721         3 TLSGGLTNRSWRIE--HPGISFVWRPQSPVCKALGVDRQREYQILQALSALGL-APKPIL---VNE----HWLLVEWLEG   72 (256)
T ss_pred             cCCCcCcCCeEEEE--eCCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCC-CCceEE---EeC----CEEEEEeccC
Confidence            45668888899886  456678899865432221 235779999999987765 344332   222    26899999 6


Q ss_pred             CCH
Q 013941          177 PSL  179 (433)
Q Consensus       177 ~~L  179 (433)
                      ..+
T Consensus        73 ~~~   75 (256)
T TIGR02721        73 EVI   75 (256)
T ss_pred             ccc
Confidence            544

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.66  E-value=0.0004  Score=65.34  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=49.5

Q ss_pred             eccccccccEEEEEEEecC------CCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           97 LSKMGEGTFGQVVECFDNE------KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~------~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ++.|..|-...||++....      .++.+++|+............+|..++..+...++ .   .+++..+..    .+
T Consensus         3 i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~~~~~r~~E~~~~~~l~~~g~-~---P~~~~~~~~----~~   74 (302)
T cd05156           3 VSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSERNL-G---PKLYGIFPN----GR   74 (302)
T ss_pred             EEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCCcceechHHHHHHHHHHHhCCC-C---CceEEEeCC----Cc
Confidence            3456677777899887533      25789999976544333456789999999987765 2   334444432    35


Q ss_pred             EEccC-CCCH
Q 013941          171 VFEKL-GPSL  179 (433)
Q Consensus       171 v~e~~-~~~L  179 (433)
                      |+||+ |..+
T Consensus        75 v~e~i~G~~l   84 (302)
T cd05156          75 IEEFIPSRTL   84 (302)
T ss_pred             hhheeCCCcC
Confidence            78888 6554

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PRK05231 homoserine kinase; Provisional

Probab=97.64  E-value=0.00099  Score=63.18  Aligned_cols=77  Identities=14%  Similarity=0.096  Sum_probs=50.3

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecc---eeccCCeEEEEEc
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRN---WFDYRNHICIVFE  173 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~---~~~~~~~~~lv~e  173 (433)
                      ++.|+.|....+|+.... +| .+++|++..  ...+....|+.++..|...++..|.++.-.+   +....+..+++++
T Consensus        27 ~~~l~~G~~n~~y~v~t~-~g-~~vLK~~~~--~~~~~l~~~~~~l~~L~~~glpvP~~i~~~~G~~~~~~~g~~~~l~~  102 (319)
T PRK05231         27 LKGIAEGIENSNFFLTTT-QG-EYVLTLFER--LTAEDLPFFLGLMQHLAARGVPVPAPVARRDGAALGELAGKPAAIVT  102 (319)
T ss_pred             cchhccccccceEEEEeC-CC-cEEEEEecc--CChHHhHHHHHHHHHHHHCCCCCCcceeCCCCCEeeeeCCEEEEEEE
Confidence            456777888899998743 33 589998762  2234556688888888877765555443211   1123566899999


Q ss_pred             cC-CC
Q 013941          174 KL-GP  177 (433)
Q Consensus       174 ~~-~~  177 (433)
                      ++ |.
T Consensus       103 ~l~G~  107 (319)
T PRK05231        103 FLEGK  107 (319)
T ss_pred             ecCCC
Confidence            99 54

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.61  E-value=0.0012  Score=62.36  Aligned_cols=80  Identities=14%  Similarity=0.051  Sum_probs=51.4

Q ss_pred             EEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecc---eeccCCeEEEE
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRN---WFDYRNHICIV  171 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~---~~~~~~~~~lv  171 (433)
                      .-++.++.|....+|++.. .++ .+++|+..... ..+....|++++..|...++..+.++...+   +....+..+++
T Consensus        25 ~~i~~~~~G~~n~~y~v~t-~~~-~~vLK~~~~~~-~~~~i~~e~~~l~~L~~~g~pvp~~i~t~~g~~~~~~~g~~~~l  101 (307)
T TIGR00938        25 LSLKGIAEGVENSNYLLTT-DVG-RYILTLYEKRV-KAEELPFFLALTTHLAARGLPVPKPVKSRDGRQLSTLAGKPACL  101 (307)
T ss_pred             eeccccCCccccceEEEEe-CCC-cEEEEEecCCC-CHHHHHHHHHHHHHHHHCCCCCCccccCCCCCeehhcCCeEEEE
Confidence            3467788888889999863 334 58889875422 234556788899999877664444333221   11235678999


Q ss_pred             EccC-CC
Q 013941          172 FEKL-GP  177 (433)
Q Consensus       172 ~e~~-~~  177 (433)
                      ++|+ |.
T Consensus       102 ~e~i~G~  108 (307)
T TIGR00938       102 VEFLQGL  108 (307)
T ss_pred             EEeCCCC
Confidence            9998 53

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=97.51  E-value=0.00016  Score=66.34  Aligned_cols=130  Identities=21%  Similarity=0.226  Sum_probs=89.7

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccc---------h--------------hhHHHHHHHHHHHHHHHhCCC
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---------N--------------KYREAAMIEIDVLQRLARHDI  150 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---------~--------------~~~~~~~~E~~~l~~l~~~~i  150 (433)
                      |.+.+.||-|--+.||.+-+ ..|...++|+-+..         +              -.+-...+|...|+.|..++.
T Consensus        94 ~svGnqIGVGKESDIY~v~d-~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gf  172 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVAD-EEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGF  172 (465)
T ss_pred             hhhccccccccccceEEEec-CCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence            67889999999999999986 45677888864210         0              012345679999999987765


Q ss_pred             CCcceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       151 ~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                      ..|   +.+    +.+..|+|||++ |..|...-+-     ..   +..+...+..-+--|-.+|+||+|..-=||++.+
T Consensus       173 pVP---kpi----D~~RH~Vvmelv~g~Pl~~v~~v-----~d---~~~ly~~lm~~Iv~la~~GlIHgDFNEFNimv~d  237 (465)
T KOG2268|consen  173 PVP---KPI----DHNRHCVVMELVDGYPLRQVRHV-----ED---PPTLYDDLMGLIVRLANHGLIHGDFNEFNIMVKD  237 (465)
T ss_pred             CCC---Ccc----cccceeeHHHhhcccceeeeeec-----CC---hHHHHHHHHHHHHHHHHcCceecccchheeEEec
Confidence            322   222    235678999999 7777654321     12   2334444555566778899999999999999988


Q ss_pred             CCcccccCcc
Q 013941          230 AEYVKVPDYK  239 (433)
Q Consensus       230 ~~~~~l~d~~  239 (433)
                      ++.+++.||.
T Consensus       238 d~~i~vIDFP  247 (465)
T KOG2268|consen  238 DDKIVVIDFP  247 (465)
T ss_pred             CCCEEEeech
Confidence            7766666664

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=97.38  E-value=8.9e-05  Score=80.14  Aligned_cols=151  Identities=13%  Similarity=0.022  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHhCCCCCcceeEecceec--cCCeEEEEEccC-CCCHHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHHH
Q 013941          136 MIEIDVLQRLARHDIGGTRCVQIRNWFD--YRNHICIVFEKL-GPSLYDFLRKNSYR--SFPIDLVRELGRQLLESVAFM  210 (433)
Q Consensus       136 ~~E~~~l~~l~~~~i~~~~~v~~~~~~~--~~~~~~lv~e~~-~~~L~~~l~~~~~~--~l~~~~~~~i~~qi~~aL~~L  210 (433)
                      ..|...++...|.++     .....-..  .....+.+++++ +|.+.+.+-+...+  .+....+.....+.+.+..-+
T Consensus      1277 l~e~de~~~~~h~~~-----~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ 1351 (2724)
T KOG1826|consen 1277 LSERDELREAKHYLT-----EVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVI 1351 (2724)
T ss_pred             hhhhhhhhhhhceee-----ecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchh
Confidence            334444455566554     33222222  244678999999 99999998754321  233334444444547778887


Q ss_pred             HhC-----CcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC---cccccCC
Q 013941          211 HEL-----RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTR  282 (433)
Q Consensus       211 H~~-----~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~  282 (433)
                      |+.     -.+|+++|+-|.+|..+.                           .++++++|+.++.....   ...++++
T Consensus      1352 ls~tnlg~T~v~~~Lkf~lpmIVtny---------------------------~v~~gk~gLdKIknp~~sf~Gl~l~sp 1404 (2724)
T KOG1826|consen 1352 LSLTNLGNTNVSKSLKFTLPMIVTNY---------------------------NVKLGKGGLDKIKNPVLSFFGLELCSP 1404 (2724)
T ss_pred             hhcccCCccchhhhhhhhccceecCC---------------------------cccccccccccccCchHhhhhhhhCCH
Confidence            764     278999999999986544                           56777777777433222   2347788


Q ss_pred             cccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          283 HYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       283 ~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                      .|++|++...-.++.++|+|..|+.+|+...|..+|
T Consensus      1405 ~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~f 1440 (2724)
T KOG1826|consen 1405 IYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYF 1440 (2724)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHH
Confidence            999999998888898899999999999998887766

>PLN02236 choline kinase

Probab=97.30  E-value=0.0037  Score=59.80  Aligned_cols=75  Identities=16%  Similarity=0.074  Sum_probs=48.9

Q ss_pred             eccccccccEEEEEEEecC----CCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           97 LSKMGEGTFGQVVECFDNE----KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~----~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      +..|..|-...+|++....    .++.|++|+........-...+|..+++.+...++.    .++++.+..+    .|.
T Consensus        41 i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~idR~~E~~~~~~l~~~gl~----P~~~~~~~~g----~v~  112 (344)
T PLN02236         41 VIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVELFFDRDDEIRTFECMSRHGQG----PRLLGRFPNG----RVE  112 (344)
T ss_pred             EEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCCeeechHHHHHHHHHHHHcCCC----CceEEEECCc----eEE
Confidence            4456568888999986432    346799998865433222346799999999988773    3444555432    578


Q ss_pred             ccC-CCCH
Q 013941          173 EKL-GPSL  179 (433)
Q Consensus       173 e~~-~~~L  179 (433)
                      +|+ +.+|
T Consensus       113 efi~g~~l  120 (344)
T PLN02236        113 EFIHARTL  120 (344)
T ss_pred             EeeCCCCC
Confidence            888 5554

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.22  E-value=0.00086  Score=58.11  Aligned_cols=94  Identities=21%  Similarity=0.158  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-CCCHHHH---HHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 013941          137 IEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDF---LRKNSYRSFPIDLVRELGRQLLESVAFMHE  212 (433)
Q Consensus       137 ~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~---l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  212 (433)
                      .|.-+++.+.+.    .++.+++|++..    ++|.||. .+++...   +...  ...++..+..|+.++++.+.+|+.
T Consensus         8 ~E~lll~~l~~~----~~~pk~lG~CG~----~~v~E~~~~~~~~~~~~~l~~~--~~~~w~~R~~iA~~lL~~l~~l~~   77 (188)
T PF12260_consen    8 NEPLLLQLLQGS----EPFPKLLGSCGR----FYVVEYVGAGSLYGIYRPLSQF--LQSPWEQRAKIALQLLELLEELDH   77 (188)
T ss_pred             cHHHHHHHcCCC----CCCCCeeeECCC----EEEEEeecCccccccccccccc--cccCHHHHHHHHHHHHHHHHHHhc
Confidence            477788888764    256899998853    5688998 4555321   1111  246899999999999999999997


Q ss_pred             ---CCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          213 ---LRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       213 ---~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                         ..+.-.|++++|+-++++|.+|+.|...
T Consensus        78 ~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~  108 (188)
T PF12260_consen   78 GPLGFFYLCDVSPDNFGVNDDGRLKLIDLDD  108 (188)
T ss_pred             CCCCcEEEeecchHHeEEeCCCcEEEEechh
Confidence               3478899999999998877666665543

Proteins in this uncharacterised family are described as transmembrane proteins.

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=97.21  E-value=0.006  Score=57.90  Aligned_cols=83  Identities=20%  Similarity=0.160  Sum_probs=50.7

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEecc--------chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRS--------INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~--------~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +.||.|....||++.+...++.|+||.-..        -....+....|...|+.....  ....+.+++.  .+.....
T Consensus         1 ~EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~--~P~~vP~vy~--~D~e~~~   76 (370)
T TIGR01767         1 QEVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEH--VPHLVPRIFH--FDTEMAV   76 (370)
T ss_pred             CcCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhcc--CccccCeEEE--Eccccce
Confidence            368999999999999754446799996421        122334556788888765432  1123344433  3345567


Q ss_pred             EEEccC--CCCHHHHHH
Q 013941          170 IVFEKL--GPSLYDFLR  184 (433)
Q Consensus       170 lv~e~~--~~~L~~~l~  184 (433)
                      +|||++  ...|...+.
T Consensus        77 ~vMEdL~~~~ilR~~Li   93 (370)
T TIGR01767        77 TVMEDLSHHKIARKGLI   93 (370)
T ss_pred             ehHhhCccchHHHHHHH
Confidence            999998  334444443

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=97.19  E-value=0.0063  Score=57.95  Aligned_cols=75  Identities=12%  Similarity=0.238  Sum_probs=47.5

Q ss_pred             eccccccccEEEEEEEecCC---CcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEc
Q 013941           97 LSKMGEGTFGQVVECFDNEK---KELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE  173 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e  173 (433)
                      ++.|..|-...+|++.....   +..|++|+........-...+|..+++.+...++.    .+++.++..+    +|.+
T Consensus        19 i~~l~gGlTN~~~~v~~~~~~~~~~~~v~Ri~g~~t~~~IdR~~E~~il~~l~~~gl~----P~~l~~~~~G----~i~~   90 (330)
T PLN02421         19 VERISGGITNLLLKVSVKEENGNEVSVTVRLFGPNTDYVIDRERELQAIKYLSAAGFG----AKLLGVFGNG----MIQS   90 (330)
T ss_pred             EEEeCCcccceEEEEEecCCCCCCceEEEEEecCCcCeEechHHHHHHHHHHHhcCCC----CceeEEeCCc----Eeeh
Confidence            34555577888998864332   34789998765433223345799999999988774    3444444322    5788


Q ss_pred             cC-CCCH
Q 013941          174 KL-GPSL  179 (433)
Q Consensus       174 ~~-~~~L  179 (433)
                      |+ +.+|
T Consensus        91 fi~g~~l   97 (330)
T PLN02421         91 FINARTL   97 (330)
T ss_pred             hhcCCCC
Confidence            88 5544

>PRK10593 hypothetical protein; Provisional

Probab=97.07  E-value=0.0054  Score=57.40  Aligned_cols=106  Identities=17%  Similarity=0.137  Sum_probs=73.1

Q ss_pred             EEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCC-CCCcceeEecceec---cCCeEEE
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD-IGGTRCVQIRNWFD---YRNHICI  170 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~-i~~~~~v~~~~~~~---~~~~~~l  170 (433)
                      .-.+.||.|..+.||..... ++ .+.+|..+. ......+..|...|+.|.... +..   .++++++.   ..+..+|
T Consensus        17 ~~~~~i~~G~~~~vy~~~~~-~~-~~~~k~~~~-~~~~~~~~~Ea~~L~~L~~~~~vpV---P~V~~~~~~~~~~g~~~L   90 (297)
T PRK10593         17 SRVECISEQPYAALWALYDS-QG-NPMPLMARS-FSTPGVAQQEAWKLSMLARSGTVRM---PTVYGVMTHEQSPGPDVL   90 (297)
T ss_pred             heeeecCCccceeEEEEEcC-CC-CEEEEEecc-cccchHHHHHHHHHHHHccCCCCCc---CcEEEEeccCCcCCCeEE
Confidence            34678999999999998642 23 477787533 223457889999999997653 333   45554443   3467899


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL  213 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~  213 (433)
                      |||++ |.++.+.       ..+......+..+++++|.-||+.
T Consensus        91 VmE~i~G~~~~~~-------~~~~~~~~~l~~~l~~~La~LH~~  127 (297)
T PRK10593         91 LLERLRGVSVEAP-------ARTPERWEQLKDQIVEGLLAWHRI  127 (297)
T ss_pred             EEeccCCEecCCC-------CCCHHHHHHHHHHHHHHHHHHhCC
Confidence            99999 7666541       133445566778888999999974

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=97.05  E-value=0.0077  Score=55.71  Aligned_cols=48  Identities=25%  Similarity=0.133  Sum_probs=30.9

Q ss_pred             cccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhC
Q 013941           99 KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH  148 (433)
Q Consensus        99 ~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~  148 (433)
                      ..++|-...|+.+. ..+|+.+++|.-+. ........+|..+|..+...
T Consensus        18 ~~~~g~~~~v~~i~-~~~g~~~VlR~p~~-~~~~~~l~rE~~vL~~L~~~   65 (276)
T cd05152          18 LNESGLDFQVVFAK-DTDGVPWVLRIPRR-PDVSERAAAEKRVLALVRKH   65 (276)
T ss_pred             ecCCcceeEEEEEE-cCCCCeEEEEecCC-HHHHHHHHHHHHHHHHHHhc
Confidence            33555555666553 24567788887653 23345678899999999753

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>PRK11768 serine/threonine protein kinase; Provisional

Probab=96.94  E-value=0.036  Score=52.65  Aligned_cols=72  Identities=17%  Similarity=0.104  Sum_probs=45.7

Q ss_pred             cEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecc--eeccCCeEEEEEccC-CC
Q 013941          105 FGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRN--WFDYRNHICIVFEKL-GP  177 (433)
Q Consensus       105 ~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~--~~~~~~~~~lv~e~~-~~  177 (433)
                      -..||++.. .++..+++|+.+...........|+..+..|...++..+..+..-+  ....++..+.|++++ |.
T Consensus        38 eN~vy~v~~-~~~~~~vlKv~r~~~~~~~~i~~E~~~l~~L~~~gipv~~p~~~~G~~~~~~~g~~~~l~~~~~G~  112 (325)
T PRK11768         38 ENRVYQFGD-EDGRRVVAKFYRPERWSDAQILEEHAFALELAEAEIPVVAPLAFNGQTLHEHQGFRFALFPRRGGR  112 (325)
T ss_pred             cceEEEEec-CCCCEEEEEEcCcccCCHHHHHHHHHHHHHHHHCCCCCCCCccCCCCEEEEECCEEEEEEeeeCCC
Confidence            347888864 4456799999865444556677899999999876653221122222  122356788899998 54

>PRK12396 5-methylribose kinase; Reviewed

Probab=96.91  E-value=0.0076  Score=57.94  Aligned_cols=75  Identities=23%  Similarity=0.206  Sum_probs=49.3

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEec----cc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVR----SI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~----~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++.||.|.-..||++.+...++.|+||.-.    ..   .-..++...|.++|+....-..  .++.+++.  .+.....
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P--~~VP~vy~--~D~e~~~  109 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAP--GLVPKVYL--FDSVMNC  109 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCC--CcCCeEEE--ECcHHhh
Confidence            678999999999999974445679999642    11   2234566778888887754211  22344433  3345567


Q ss_pred             EEEccC
Q 013941          170 IVFEKL  175 (433)
Q Consensus       170 lv~e~~  175 (433)
                      +|||++
T Consensus       110 ~vMEdL  115 (409)
T PRK12396        110 CVMEDL  115 (409)
T ss_pred             HHHHhC
Confidence            888888

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=96.86  E-value=0.032  Score=52.58  Aligned_cols=67  Identities=10%  Similarity=0.237  Sum_probs=42.1

Q ss_pred             EEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecc---eeccCCeEEEEEccC-CCC
Q 013941          107 QVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRN---WFDYRNHICIVFEKL-GPS  178 (433)
Q Consensus       107 ~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~---~~~~~~~~~lv~e~~-~~~  178 (433)
                      .||++.. ..| .+++|++...   ......|+.++..|...++..+.++...+   +...++..++|++++ |..
T Consensus        11 ~v~~v~t-~~g-~~~LK~~~~~---~~~~~~~~~~~~~L~~~g~~vp~~i~t~~g~~~~~~~~~~~~l~~~i~G~~   81 (313)
T TIGR02906        11 NVYKVET-DSG-NKCLKKINYP---PERLLFILGAQEHLRKNGFNIPKILKTKDGELYVKYNGDLYVLTEWIEGRE   81 (313)
T ss_pred             cEEEEEe-CCC-CeEEEEcCCC---HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEehhccCcC
Confidence            4888863 233 5899987532   23456688888888877764444444321   112356789999999 543

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PLN02756 S-methyl-5-thioribose kinase

Probab=96.83  E-value=0.022  Score=55.09  Aligned_cols=74  Identities=16%  Similarity=0.154  Sum_probs=48.2

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEecc-----ch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVRS-----IN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-----~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ..+.||.|....||+..+.  ++.|+||.-..     ..   ........|...|+.+...  ...++.+++.+.+  +.
T Consensus        36 ~~~eiggGn~N~VyrV~~~--~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~--~p~~VPkVy~~de--d~  109 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSS--SGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRL--CPDHVPEVYHFDR--TM  109 (418)
T ss_pred             eEEEcCCCceeeEEEEEcC--CccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhc--CCCCCCeEEEECC--CC
Confidence            3678999999999999863  44589997541     11   1334455677777766532  1124466666665  44


Q ss_pred             EEEEEccC
Q 013941          168 ICIVFEKL  175 (433)
Q Consensus       168 ~~lv~e~~  175 (433)
                      .+++||++
T Consensus       110 ~vlvME~L  117 (418)
T PLN02756        110 ALIGMRYL  117 (418)
T ss_pred             CEEEEeec
Confidence            67889999

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=96.77  E-value=0.013  Score=54.85  Aligned_cols=76  Identities=13%  Similarity=0.059  Sum_probs=44.5

Q ss_pred             EEeccccccccEEEEEEEecCCCcEEEEEEecc---chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC--eEE
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN--HIC  169 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~--~~~  169 (433)
                      .+++.+..|....+|...+.  ++.+++. ...   .........+|..+++.+..-.+   .+...++++..+.  ..+
T Consensus        28 ~~v~~~~~G~sn~t~~~~~~--~~~~vlR-~P~~~~~~~~~~~~~re~~~i~~l~~~~v---P~p~~~~~~~~~~~g~pf  101 (321)
T COG3173          28 LIVEEISGGWSNDTFRLGDT--GQKYVLR-KPPRGDPVESAHDEKREYRVIAALLDVDV---PVPRAFGLCGEGYLGTPF  101 (321)
T ss_pred             ceeeeccCCcccceEEEecC--CceEEEe-cCCccccchhhhHHHhHHHHHHHhcCCCC---CCcccccccccCCCCCce
Confidence            34455544544455655533  7778888 331   12334556678888888765433   2234455555544  679


Q ss_pred             EEEccC-C
Q 013941          170 IVFEKL-G  176 (433)
Q Consensus       170 lv~e~~-~  176 (433)
                      .||+++ |
T Consensus       102 ~v~~~veG  109 (321)
T COG3173         102 YVMEWVEG  109 (321)
T ss_pred             EEEEEecc
Confidence            999999 5

>PTZ00384 choline kinase; Provisional

Probab=96.49  E-value=0.053  Score=52.57  Aligned_cols=76  Identities=20%  Similarity=0.244  Sum_probs=46.3

Q ss_pred             EeccccccccEEEEEEEecCCC------cEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           96 ILSKMGEGTFGQVVECFDNEKK------ELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~------~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .++.|..|-...+|++......      +.|.+++........-.-.+|+.+++.+...+++    .++++.+..    +
T Consensus        54 ~i~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~~~~l~IdR~~E~~i~~~Ls~~glg----P~l~~~f~~----g  125 (383)
T PTZ00384         54 EIKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTYNSLVIDNDLQYNIAKLLGDNNFG----PKIIGRFGD----F  125 (383)
T ss_pred             EEEEeCCcccceEEEEEecCCCCCccccceEEEEeccCCCceEeccHHHHHHHHHHHhCCCC----CeEEEecCC----E
Confidence            3456666888899999743321      2244444322222222335689999999888763    556665543    5


Q ss_pred             EEEccC-CCCH
Q 013941          170 IVFEKL-GPSL  179 (433)
Q Consensus       170 lv~e~~-~~~L  179 (433)
                      +|.||+ |.+|
T Consensus       126 ~l~efIeGr~l  136 (383)
T PTZ00384        126 TIQEWVEGNTM  136 (383)
T ss_pred             EEEEEeccccC
Confidence            889998 6554

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=96.26  E-value=0.012  Score=52.04  Aligned_cols=54  Identities=20%  Similarity=0.183  Sum_probs=34.9

Q ss_pred             CcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-CCC
Q 013941          117 KELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPS  178 (433)
Q Consensus       117 ~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~  178 (433)
                      ++.|++|+........-....|..+++.+...+++    .++++.+..+    +|.+|+ |.+
T Consensus         2 ~~~~~~Ri~g~~t~~~idr~~E~~~~~~l~~~g~~----p~~~~~~~~g----~v~e~i~g~~   56 (211)
T PF01633_consen    2 PEKYLVRIPGEGTENFIDRENENEALKLLSEAGLG----PKIIYFFENG----RVEEFIEGRT   56 (211)
T ss_dssp             TSEEEEEEEESCGCSHHHHHHHHHHHHHHHHTTSS----S-EEEEETTE----EEEE--SSEE
T ss_pred             CCEEEEEeCCCCcccccCHHHHHHHHHHHHHcCCC----CeEEEEcCCC----cEEEEecccc
Confidence            45789999877655556677899999999987763    4555555443    466777 444

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=95.98  E-value=0.037  Score=48.42  Aligned_cols=111  Identities=16%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             cccEEEEEEEecCCCcEEEEEEeccchh--hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-CCCH
Q 013941          103 GTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSL  179 (433)
Q Consensus       103 G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L  179 (433)
                      |+.++.-.+.... | ...+|+++...-  ....+..+..++.++.  +|     +++..  ++...+.++.|+| ....
T Consensus        73 ~gNsTl~~~kt~i-G-~L~lKKi~slp~~~~~~~y~nky~v~Armh--Gi-----lrL~N--Dn~~~yGvIlE~Cy~~~i  141 (308)
T PF07387_consen   73 NGNSTLLIGKTKI-G-PLFLKKIRSLPCCINDALYFNKYRVFARMH--GI-----LRLKN--DNNYKYGVILERCYKIKI  141 (308)
T ss_pred             CCceEEEEecccc-c-hhhhhhccCCCcccchhhhhhhhhHHHHhh--he-----eEeec--CCCceeEEEEeeccCccc
Confidence            4444554444333 3 345666654332  2344567888888884  44     77774  2455688999999 3211


Q ss_pred             HHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh--CCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          180 YDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE--LRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       180 ~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~--~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                                 ..   .-.|. .=+.+|.-.|+  .+.+|+|..|+||+-+..|.+|+.|.+
T Consensus       142 -----------~~---~N~i~-agi~~L~~fH~~~~~~lHGD~np~NiM~D~~G~lKlVDP~  188 (308)
T PF07387_consen  142 -----------NF---SNFIT-AGIKDLMDFHSENQHCLHGDCNPDNIMCDKFGYLKLVDPV  188 (308)
T ss_pred             -----------ch---hHHHH-HhHHHHHHhhccCCCeecCCCChhheeecCCCCEEecChh
Confidence                       11   11111 11467888894  479999999999999888877776665

The function of this family is unknown.

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=95.98  E-value=0.039  Score=52.68  Aligned_cols=62  Identities=24%  Similarity=0.363  Sum_probs=46.3

Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH-hCCcEecCCCCCcEEEeeCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH-~~~ivHrDikp~NIli~~~~  231 (433)
                      ...|+-+|. |-++..++...+   .+++..+.++.-.+.||--+- -.+++|.|+.|.||++.-..
T Consensus       319 ~~vl~E~~~~Gl~v~~~v~~~~---~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf~~  382 (565)
T KOG1236|consen  319 DLVLVETYERGLSVLRFVKWKS---QPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRFNK  382 (565)
T ss_pred             cceeeeeccccccHHhhhhccc---ChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEecC
Confidence            345666677 889999987654   667777777777777765443 56899999999999996543

>PRK06148 hypothetical protein; Provisional

Probab=95.91  E-value=0.12  Score=56.89  Aligned_cols=81  Identities=15%  Similarity=0.105  Sum_probs=48.1

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhC--CCCCcceeEecc-----eecc-CC--e
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH--DIGGTRCVQIRN-----WFDY-RN--H  167 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~--~i~~~~~v~~~~-----~~~~-~~--~  167 (433)
                      +.|+. ..-.+|++.. .+|+.+++|+.+... .......|...+..|...  .+..|.++...+     .... ++  .
T Consensus        31 ~~L~s-~~d~nf~v~~-~~g~~yVLKi~~~~~-~~~~~~~q~~~L~hL~~~~~glpvP~~i~t~~G~~~~~v~~~~G~~~  107 (1013)
T PRK06148         31 TPLDG-ERDLNFRLTT-DDGADYILKIVNPSE-PRVESDFQTAALDHLAAVAPDLPVPRLIPSLSGASLASAQDPDGEPR  107 (1013)
T ss_pred             eecCC-cCCceEEEEe-CCCCeEEEEEcCCcc-chhHHHHHHHHHHHHHhhCCCCCcCeeeecCCCCeEEEeecCCCceE
Confidence            45643 4567788763 456679999987542 233445577778777653  554455554321     1111 22  5


Q ss_pred             EEEEEccC-CCCHHH
Q 013941          168 ICIVFEKL-GPSLYD  181 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~  181 (433)
                      .+.+++|+ |..|.+
T Consensus       108 ~vrLl~~l~G~~l~~  122 (1013)
T PRK06148        108 LLRLLSWLPGTPLAE  122 (1013)
T ss_pred             EEEEEeccCCCcHHh
Confidence            77889999 666654

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=95.88  E-value=0.048  Score=50.61  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=50.0

Q ss_pred             EEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEcc
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEK  174 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~  174 (433)
                      +-.+.++.|....+|+..  .+++.+.||+-.  ......+..|.+-|+.|....-  ..+.+++.+....+..+|||||
T Consensus        20 ~~~~~v~GG~i~~a~~~~--~~~~~~FvK~~~--~~~~~~f~~Ea~gL~~L~~~~~--~~vP~vi~~G~~~~~~fLlle~   93 (288)
T PF03881_consen   20 TSIEPVSGGDINEAYRLD--TDGGSYFVKVNS--ESGRDMFEGEAEGLKALAEANP--IRVPKVIAWGEYDDDAFLLLEF   93 (288)
T ss_dssp             -EEEEE--SSSSEEEEEE--TTS-EEEEEEEE--GGGCCHHHHHHHHHHHHCHTTT--SBS--EEEEEE-SSCCEEEEE-
T ss_pred             eeeEecCCCChhheEEEE--CCCccEEEEecC--hhhHHHHHHHHHHHHHHHhcCC--CCCCeEEEEEeecCCceEEEEe
Confidence            345678889999999987  677789999865  3444678889999999954322  3456777777666677999999


Q ss_pred             C
Q 013941          175 L  175 (433)
Q Consensus       175 ~  175 (433)
                      +
T Consensus        94 l   94 (288)
T PF03881_consen   94 L   94 (288)
T ss_dssp             -
T ss_pred             e
Confidence            8

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PTZ00296 choline kinase; Provisional

Probab=95.84  E-value=0.095  Score=51.82  Aligned_cols=74  Identities=20%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             EeccccccccEEEEEEEecC--------CCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           96 ILSKMGEGTFGQVVECFDNE--------KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~--------~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      -++.|..|-...+|++....        .++.|.+++.-......-....|..+++.+...+++    .++++.+..   
T Consensus       109 ~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te~lIdR~~E~~v~~~ls~~gi~----P~l~~~f~g---  181 (442)
T PTZ00296        109 RVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDVDELYNPISEFEVYKTMSKYRIA----PQLLNTFSG---  181 (442)
T ss_pred             EEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCccceeCHHHHHHHHHHHHHCCCC----CceEEEeCC---
Confidence            45677778888889887442        256799998765443333456699999999988874    344454432   


Q ss_pred             EEEEEccC-CC
Q 013941          168 ICIVFEKL-GP  177 (433)
Q Consensus       168 ~~lv~e~~-~~  177 (433)
                       +.|.||+ |.
T Consensus       182 -g~I~efi~g~  191 (442)
T PTZ00296        182 -GRIEEWLYGD  191 (442)
T ss_pred             -CEEEEeeCCc
Confidence             3567888 55

>PHA03111 Ser/Thr kinase; Provisional

Probab=95.65  E-value=0.017  Score=53.43  Aligned_cols=95  Identities=18%  Similarity=0.228  Sum_probs=54.9

Q ss_pred             eEEEEEccCCCC---HHH-HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh----CCcEecCCCCCcEEEeeCCc---ccc
Q 013941          167 HICIVFEKLGPS---LYD-FLRKNSYRSFPIDLVRELGRQLLESVAFMHE----LRLIHTDLKPENILLVSAEY---VKV  235 (433)
Q Consensus       167 ~~~lv~e~~~~~---L~~-~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~----~~ivHrDikp~NIli~~~~~---~~l  235 (433)
                      .-.+|+++..++   +.. ...+.+. .--.+-++.++.||+.-.-.+-+    .+.+|-||||+||||-+...   ++.
T Consensus       249 GnIIIfPLArcSadkv~~~~~~e~GF-~s~~~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~  327 (444)
T PHA03111        249 GNIIIFPLARCSADKVTEENAAELGF-KSLVEYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDEPISITL  327 (444)
T ss_pred             CcEEEEehhhcccccCCHHHHHHcCC-ccHHHHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCCcEEEEE
Confidence            346788775322   221 1122221 12345678899998765534433    36999999999999966542   222


Q ss_pred             cCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC
Q 013941          236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD  274 (433)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~  274 (433)
                      .+-.++            ..+...++|.||.+|...+-.
T Consensus       328 ~~~~~v------------F~Epi~~~LnDFDfSqv~~i~  354 (444)
T PHA03111        328 KDATYV------------FNEPIKACLNDFDFSQVANII  354 (444)
T ss_pred             CCeEEE------------eccchhhhhcccCHHHHccch
Confidence            222111            134556789999988765443

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=95.50  E-value=0.19  Score=47.62  Aligned_cols=79  Identities=19%  Similarity=0.155  Sum_probs=50.0

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcce-eEeccee--ccCC--eEEEEE
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRC-VQIRNWF--DYRN--HICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~-v~~~~~~--~~~~--~~~lv~  172 (433)
                      ..|.+ .-..||+.... +|+ +++|+.+.. .......-|+..+..|...++..+-- ..+-+-.  ...+  ..+-|+
T Consensus        32 ~~l~s-~eN~~f~~~~~-~g~-~iLki~~~~-~~~~~i~~el~~l~~La~~~i~v~~Pl~~~dG~~l~~~~~~~r~a~lf  107 (331)
T COG2334          32 RGLNS-EENSNFRVQTE-DGR-YILKIYRPG-WTRAEIPFELALLQHLAERGIPVPAPLPSLDGELLEALSGGPRPAALF  107 (331)
T ss_pred             ccccc-ccCceEEEEec-CCC-eEEEEecCC-CCHHHHHHHHHHHHHHHHcCCCCCCCccCCCcchhhhccCCceeEEEE
Confidence            34444 45578888743 344 499999876 66677888999999998877633211 2221111  1134  788899


Q ss_pred             ccC-CCCHH
Q 013941          173 EKL-GPSLY  180 (433)
Q Consensus       173 e~~-~~~L~  180 (433)
                      +|+ |..+.
T Consensus       108 ~~l~G~~~~  116 (331)
T COG2334         108 EYLPGRPLE  116 (331)
T ss_pred             EecCCcCcC
Confidence            999 65555

>KOG2269 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.39  E-value=0.053  Score=50.23  Aligned_cols=124  Identities=20%  Similarity=0.277  Sum_probs=87.2

Q ss_pred             EeccccccccEEEEEEEec-------C---CCcEEEEEEeccch--------------hh-------------HHHHHHH
Q 013941           96 ILSKMGEGTFGQVVECFDN-------E---KKELVAIKIVRSIN--------------KY-------------REAAMIE  138 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~-------~---~~~~vavK~~~~~~--------------~~-------------~~~~~~E  138 (433)
                      |...|..|--+.|+.|.--       .   ....+|||+++-.-              ..             .-...+|
T Consensus       256 i~GiIsTGKEsvvlHAY~GS~E~~~qd~ql~ptecAIKvfKTTLnEFKnRd~YiKDDfRFKDRFSK~NpR~i~~mWAEkE  335 (531)
T KOG2269|consen  256 IDGIISTGKESVVLHAYAGSNEHGHQDPQLSPTECAIKVFKTTLNEFKNRDEYIKDDFRFKDRFSKQNPRGILKMWAEKE  335 (531)
T ss_pred             hhhhhhcCcceEEEEeccCcccccccCcccCchHHHHHHHHHHHHHHhhhhhhhccchhhhhhhcccCcHHHHHHHHHHH
Confidence            4567888888999888420       1   22458999875100              00             1123468


Q ss_pred             HHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccCCC--CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH-hCCc
Q 013941          139 IDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH-ELRL  215 (433)
Q Consensus       139 ~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~~~--~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH-~~~i  215 (433)
                      +..|.++..+++..|.+|.+..       ..|||-|+|.  .-.-.|..   -.|+....+..-.|+..++.-|. +.-+
T Consensus       336 mhNL~RMq~~GlpcP~vV~lkk-------hvLVMsFiGd~~~aAPkLK~---v~l~d~E~~~aY~q~~~~M~~lY~Ec~L  405 (531)
T KOG2269|consen  336 MHNLSRMQKHGLPCPQVVKLKK-------HVLVMSFIGDQGLAAPKLKN---VELTDDERRNAYDQVQSIMCRLYKECLL  405 (531)
T ss_pred             HHHHHHHHhcCCCCCceeeeec-------ceEEEEeecCCCCCCccccc---cccChHHHHHHHHHHHHHHHHHHHhhhe
Confidence            8889999999998898888754       5699999843  22222222   24888888888889998888764 6789


Q ss_pred             EecCCCCCcEEEee
Q 013941          216 IHTDLKPENILLVS  229 (433)
Q Consensus       216 vHrDikp~NIli~~  229 (433)
                      ||.|+.--|+|+..
T Consensus       406 VHADlSEyN~Lw~~  419 (531)
T KOG2269|consen  406 VHADLSEYNLLWTP  419 (531)
T ss_pred             eecchhhhhheecC
Confidence            99999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	433
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		9e-90
2wu6_A	381	Crystal Structure Of The Human Clk3 In Complex With		8e-85
2eu9_A	355	Crystal Structure Of Clk3 Length = 355		1e-84
2exe_A	357	Crystal Structure Of The Phosphorylated Clk3 Length		1e-84
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		2e-83
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		4e-82
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		2e-66
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		4e-52
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		6e-52
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		8e-52
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		2e-49
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		2e-49
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		8e-49
3beg_A	381	Crystal Structure Of Sr Protein Kinase 1 Complexed		1e-42
1wbp_A	397	Srpk1 Bound To 9mer Docking Motif Peptide Length =		2e-42
2x7g_A	389	Structure Of Human Serine-Arginine-Rich Protein-Spe		4e-41
1how_A	373	The X-Ray Crystal Structure Of Sky1p, An Sr Protein		1e-34
1q8y_A	373	The Structure Of The Yeast Sr Protein Kinase, Sky1p		1e-34
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		2e-27
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		3e-27
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		4e-27
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		8e-27
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		9e-27
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		1e-26
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		1e-26
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		2e-26
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		2e-26
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		2e-26
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		2e-26
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		2e-26
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		2e-26
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		2e-26
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		2e-26
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-26
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-26
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		2e-26
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		2e-26
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		2e-26
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		3e-26
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		3e-26
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		3e-26
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		3e-26
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		3e-26
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		3e-26
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		3e-26
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		3e-26
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		3e-26
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		3e-26
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		3e-26
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		3e-26
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		5e-26
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		5e-26
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		1e-25
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		1e-25
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		6e-25
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-25
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		1e-24
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		1e-24
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		3e-24
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		4e-24
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		4e-24
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		4e-24
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		4e-24
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		4e-24
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		4e-24
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		4e-24
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		5e-24
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		5e-24
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		5e-24
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		5e-24
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		5e-24
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		5e-24
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		5e-24
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		5e-24
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		5e-24
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		5e-24
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		5e-24
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		6e-24
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		9e-24
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		1e-23
3eb0_A	383	Crystal Structure Of Cgd4_240 From Cryptosporidium		1e-23
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		1e-23
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		2e-23
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		2e-23
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		5e-23
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		5e-23
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		8e-23
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-22
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		2e-22
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-22
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		3e-22
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		4e-22
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		4e-22
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		5e-22
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		6e-22
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		7e-22
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		7e-22
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		7e-22
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		7e-22
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		7e-22
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		7e-22
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		8e-22
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		8e-22
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		9e-22
2oza_B	366	Structure Of P38alpha Complex Length = 366		9e-22
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		1e-21
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		1e-21
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		1e-21
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		1e-21
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		1e-21
3hec_A	348	P38 In Complex With Imatinib Length = 348		1e-21
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		1e-21
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		1e-21
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		1e-21
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		1e-21
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		1e-21
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		1e-21
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		1e-21
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		1e-21
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		1e-21
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		1e-21
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		1e-21
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		1e-21
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		1e-21
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		1e-21
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		1e-21
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		1e-21
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		1e-21
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		1e-21
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		1e-21
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		1e-21
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		1e-21
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		1e-21
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		1e-21
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		1e-21
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		1e-21
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		1e-21
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		1e-21
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		1e-21
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		1e-21
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		1e-21
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		1e-21
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		1e-21
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		1e-21
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		2e-21
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		2e-21
4exu_A	371	Mapk13, Inactive Form Length = 371		2e-21
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		2e-21
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		3e-21
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		3e-21
1na7_A	329	Crystal Structure Of The Catalytic Subunit Of Human		3e-21
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		4e-21
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		5e-21
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		9e-21
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		1e-20
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		1e-20
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		1e-20
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		1e-20
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		2e-20
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-20
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-20
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		4e-20
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-20
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		5e-20
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-19
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		1e-19
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		1e-19
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		4e-19
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		5e-19
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		6e-19
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		6e-19
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		7e-19
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		7e-19
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		7e-19
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		7e-19
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		7e-19
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		8e-19
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		9e-19
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		9e-19
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		9e-19
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		9e-19
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		9e-19
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		1e-18
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		1e-18
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		1e-18
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		1e-18
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		1e-18
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		1e-18
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		1e-18
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		1e-18
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		1e-18
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		1e-18
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		1e-18
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		2e-18
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		2e-18
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		2e-18
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		3e-18
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		3e-18
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		3e-18
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		3e-18
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		4e-18
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		4e-18
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		5e-18
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		5e-18
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		5e-18
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		5e-18
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		5e-18
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		6e-18
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		6e-18
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		7e-18
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		1e-17
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		1e-17
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		1e-17
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		1e-17
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		2e-17
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		2e-17
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		2e-17
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		2e-17
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		2e-17
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		3e-17
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		3e-17
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		3e-17
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		4e-17
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		4e-17
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		4e-17
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		5e-17
3juh_A	335	Crystal Structure Of A Mutant Of Human Protein Kina		5e-17
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		6e-17
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		7e-17
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		7e-17
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		7e-17
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		7e-17
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		7e-17
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		7e-17
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		8e-17
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		8e-17
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		8e-17
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		8e-17
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		8e-17
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		8e-17
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		1e-16
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		1e-16
3bqc_A	335	High Ph-Value Crystal Structure Of Emodin In Comple		2e-16
3q9w_A	336	Crystal Structure Of Human Ck2 Alpha In Complex Wit		2e-16
1jwh_A	337	Crystal Structure Of Human Protein Kinase Ck2 Holoe		2e-16
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		2e-16
2zjw_A	340	Crystal Structure Of Human Ck2 Alpha Complexed With		2e-16
1pjk_A	334	Crystal Structure Of A C-terminal Deletion Mutant O		2e-16
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		2e-16
3u87_A	349	Structure Of A Chimeric Construct Of Human Ck2alpha		2e-16
3q04_A	328	Crystal Structure Of The Apo-Form Of Human Ck2 Alph		3e-16
2r7i_A	335	Crystal Structure Of Catalytic Subunit Of Protein K		3e-16
3h30_A	334	Crystal Structure Of The Catalytic Subunit Of Human		3e-16
3nsz_A	330	Human Ck2 Catalytic Domain In Complex With Amppn Le		3e-16
3nga_A	333	Human Ck2 Catalytic Domain In Complex With Cx-4945		3e-16
3mb6_A	331	Human Ck2 Catalytic Domain In Complex With A Difura		3e-16
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		5e-16
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		5e-16
4dgl_C	335	Crystal Structure Of The Ck2 Tetrameric Holoenzyme		7e-16
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		7e-16
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		7e-16
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		7e-16
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		8e-16
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		1e-15
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		1e-15
3kxg_A	327	Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subun		1e-15
4dgn_A	326	Crystal Structure Of Maize Ck2 In Complex With The		1e-15
3pvg_A	331	Crystal Structure Of Z. Mays Ck2 Alpha Subunit In C		2e-15
2qc6_A	332	Protein Kinase Ck2 In Complex With Dbc Length = 332		2e-15
1ds5_A	332	Dimeric Crystal Structure Of The Alpha Subunit In C		2e-15
2pvh_A	352	Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]tri		2e-15
4dgm_A	326	Crystal Structure Of Maize Ck2 In Complex With The		2e-15
4anm_A	335	Complex Of Ck2 With A Cdc7 Inhibitor Length = 335		2e-15
1daw_A	327	Crystal Structure Of A Binary Complex Of Protein Ki		2e-15
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		2e-15
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		2e-15
1m2p_A	325	Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro- Anthra		2e-15
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		3e-15
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		3e-14
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		3e-14
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		3e-14
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		3e-14
3ofm_A	350	Structure Of A Human Ck2alpha Prime, The Paralog Is		4e-14
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		5e-14
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		6e-14
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		6e-14
3e3b_X	339	Crystal Structure Of Catalytic Subunit Of Human Pro		7e-14
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		9e-14
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		9e-14
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		9e-14
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		1e-13
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		1e-13
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		1e-13
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		1e-13
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		1e-13
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		1e-13
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		1e-13
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		1e-13
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		1e-13
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		1e-13
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		1e-13
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		2e-13
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		2e-13
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		2e-13
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		2e-13
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		3e-13
3rgf_A	405	Crystal Structure Of Human Cdk8CYCC Length = 405		3e-13
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		3e-13
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		3e-13
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		4e-13
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		4e-13
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		4e-13
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		4e-13
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		4e-13
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		5e-13
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		5e-13
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		5e-13
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		6e-13
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		7e-13
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		7e-13
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		8e-13
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		9e-13
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		9e-13
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		9e-13
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		9e-13
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		1e-12
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		1e-12
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		1e-12
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		1e-12
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		1e-12
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		1e-12
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-12
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		1e-12
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		1e-12
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		1e-12
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		1e-12
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		1e-12
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		1e-12
2oza_A	356	Structure Of P38alpha Complex Length = 356		2e-12
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		2e-12
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		2e-12
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		2e-12
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		2e-12
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		2e-12
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		2e-12
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		2e-12
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		2e-12
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		2e-12
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		3e-12
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		3e-12
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		3e-12
2zmc_A	390	Crystal Structure Of Human Mitotic Checkpoint Kinas		3e-12
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		3e-12
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-12
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		4e-12
3hmn_A	342	Crystal Structure Of Human Mps1 Catalytic Domain In		4e-12
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		4e-12
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		4e-12
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		4e-12
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		5e-12
3dbq_A	343	Crystal Structure Of Ttk Kinase Domain Length = 343		5e-12
3cek_A	313	Crystal Structure Of Human Dual Specificity Protein		5e-12
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		6e-12
4fie_A	423	Full-Length Human Pak4 Length = 423		6e-12
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		6e-12
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		6e-12
2x9e_A	317	Human Mps1 In Complex With Nms-P715 Length = 317		6e-12
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		6e-12
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		7e-12
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		7e-12
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		7e-12
3vqu_A	320	Crystal Structure Of Human Mps1 Catalytic Domain In		7e-12
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		8e-12
3h9f_A	313	Crystal Structure Of Human Dual Specificity Protein		8e-12
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		8e-12
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		8e-12
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		8e-12
3g51_A	325	Structural Diversity Of The Active Conformation Of		9e-12
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		9e-12
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		9e-12
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		9e-12
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		1e-11
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		1e-11
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		1e-11
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		1e-11
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		1e-11
2zmd_A	390	Crystal Structure Of Human Mps1 Catalytic Domain T6		1e-11
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		1e-11
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		1e-11
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		1e-11
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		1e-11
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		1e-11
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		1e-11
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		1e-11
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		1e-11
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		1e-11
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		1e-11
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		1e-11
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		2e-11
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		2e-11
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-11
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-11
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		2e-11
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		2e-11
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		2e-11
4ae6_A	343	Structure And Function Of The Human Sperm-specific		2e-11
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		2e-11
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		2e-11
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		2e-11
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		2e-11
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		2e-11
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		2e-11
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		2e-11
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		2e-11
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		2e-11
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		3e-11
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		3e-11
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		3e-11
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		3e-11
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		3e-11
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		3e-11
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		3e-11
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		3e-11
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		3e-11
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		3e-11
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		4e-11
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		4e-11
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		4e-11
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		4e-11
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		4e-11
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		4e-11
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		4e-11
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		5e-11
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		5e-11
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		5e-11
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		5e-11
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		5e-11
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		5e-11
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		5e-11
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		5e-11
4ae9_A	343	Structure And Function Of The Human Sperm-specific		6e-11
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		7e-11
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		7e-11
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		7e-11
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		7e-11
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		7e-11
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		7e-11
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		7e-11
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		7e-11
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		8e-11
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		8e-11
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		8e-11
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		9e-11
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		9e-11
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		9e-11
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		1e-10
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		1e-10
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-10
3sv0_A	483	Crystal Structure Of Casein Kinase-1 Like Protein I		1e-10
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		1e-10
3a7f_A	303	Human Mst3 Kinase Length = 303		1e-10
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		1e-10
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-10
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		2e-10
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		2e-10
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		2e-10
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		2e-10
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		2e-10
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		2e-10
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		2e-10
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		2e-10
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		3e-10
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		4e-10
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		4e-10
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		4e-10
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		4e-10
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		4e-10
2pl0_A	289	Lck Bound To Imatinib Length = 289		7e-10
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		7e-10
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		7e-10
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		8e-10
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		8e-10
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		8e-10
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		9e-10
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		1e-09
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		1e-09
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		1e-09
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		1e-09
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		1e-09
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		1e-09
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		2e-09
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		2e-09
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		2e-09
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		2e-09
1ckj_A	317	Casein Kinase I Delta Truncation Mutant Containing		2e-09
3uys_A	296	Crystal Structure Of Apo Human Ck1d Length = 296		2e-09
3soa_A	444	Full-Length Human Camkii Length = 444		2e-09
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		3e-09
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		3e-09
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		3e-09
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		3e-09
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		3e-09
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		4e-09
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		5e-09
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		5e-09
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		5e-09
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		5e-09
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		5e-09
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		5e-09
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		6e-09
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		6e-09
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		6e-09
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		6e-09
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		7e-09
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		7e-09
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		7e-09
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		7e-09
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		7e-09
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		7e-09
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		7e-09
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		7e-09
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		7e-09
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		7e-09
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		8e-09
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		8e-09
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		8e-09
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		8e-09
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		9e-09
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		9e-09
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		9e-09
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		9e-09
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		9e-09
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		9e-09
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		9e-09
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		9e-09
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		9e-09
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		9e-09
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		1e-08
1yxs_A	293	Crystal Structure Of Kinase Pim1 With P123m Mutatio		1e-08
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		1e-08
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		1e-08
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		1e-08
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		1e-08
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		1e-08
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		1e-08
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-08
4f99_A	361	Human Cdc7 Kinase In Complex With Dbf4 And Nucleoti		1e-08
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		1e-08
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-08
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		1e-08
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-08
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		1e-08
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		1e-08
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		1e-08
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		1e-08
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		1e-08
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		1e-08
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		1e-08
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		1e-08
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		1e-08
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		1e-08
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		1e-08
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		1e-08
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		1e-08
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		1e-08
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		1e-08
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-08
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		1e-08
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		1e-08
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		1e-08
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		1e-08
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		1e-08
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		2e-08
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		2e-08
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		2e-08
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		2e-08
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		2e-08
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		2e-08
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		2e-08
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		2e-08
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-08
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		2e-08
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		2e-08
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		2e-08
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		2e-08
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		2e-08
3p1a_A	311	Structure Of Human Membrane-Associated Tyrosine- An		2e-08
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		2e-08
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		2e-08
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		2e-08
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-08
2xiy_A	301	Protein Kinase Pim-1 In Complex With Fragment-2 Fro		2e-08
2xix_A	301	Protein Kinase Pim-1 In Complex With Fragment-1 Fro		2e-08
3a99_A	320	Structure Of Pim-1 Kinase Crystallized In The Prese		2e-08
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		2e-08
2xj0_A	301	Protein Kinase Pim-1 In Complex With Fragment-4 Fro		3e-08
1xqz_A	300	Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolut		3e-08
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-08
2obj_A	333	Crystal Structure Of Human Pim-1 Kinase In Complex		3e-08
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		3e-08
3f2a_A	300	Crystal Structure Of Human Pim-1 In Complex With Da		3e-08
3uix_A	298	Crystal Structure Of Pim1 Kinase In Complex With Sm		3e-08
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		3e-08
4a7c_A	308	Crystal Structure Of Pim1 Kinase With Etp46546 Leng		3e-08
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		3e-08
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-08
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		3e-08
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		3e-08
1xws_A	313	Crystal Structure Of The Human Pim1 Kinase Domain L		3e-08
2bik_B	313	Human Pim1 Phosphorylated On Ser261 Length = 313		3e-08
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		3e-08
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-08
3r00_A	299	The Discovery Of Novel Benzofuran-2-Carboxylic Acid		3e-08
3jxw_A	294	Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-		3e-08
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		3e-08
3ma3_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		3e-08
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		3e-08
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		3e-08
2j2i_B	312	Crystal Structure Of The Humab Pim1 In Complex With		3e-08
3cxw_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		3e-08
1ywv_A	293	Crystal Structures Of Proto-Oncogene Kinase Pim1: A		3e-08
4alv_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		3e-08
2bil_B	313	The Human Protein Kinase Pim1 In Complex With Its C		3e-08
3cy3_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		3e-08
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		3e-08
3kk9_A	282	Camkii Substrate Complex B Length = 282		3e-08
3dcv_A	328	Crystal Structure Of Human Pim1 Kinase Complexed Wi		3e-08
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		3e-08
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		3e-08
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		3e-08
3jpv_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		4e-08
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		4e-08
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		4e-08
3kk8_A	284	Camkii Substrate Complex A Length = 284		4e-08
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		4e-08
4hni_A	296	Crystal Structure Of Ck1e In Complex With Pf4800567		4e-08
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		4e-08
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		4e-08
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		4e-08
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		4e-08
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		4e-08
4dtk_A	276	Novel And Selective Pan-Pim Kinase Inhibitor Length		5e-08
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		5e-08
3kga_A	299	Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexe		5e-08
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		6e-08
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		6e-08
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		7e-08
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		7e-08
1yhs_A	273	Crystal Structure Of Pim-1 Bound To Staurosporine L		7e-08
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		7e-08
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		7e-08
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		7e-08
4dn5_A	356	Crystal Structure Of Nf-kb-inducing Kinase (nik) Le		8e-08
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		8e-08
4g3d_A	371	Crystal Structure Of Human Nf-kappab Inducing Kinas		8e-08
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		9e-08
4as0_A	273	Cyclometalated Phthalimides As Protein Kinase Inhib		9e-08
3c4e_A	273	Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7		9e-08
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		9e-08
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		9e-08
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		9e-08
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		1e-07
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		1e-07
2iwi_A	312	Crystal Structure Of The Human Pim2 In Complex With		1e-07
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		1e-07
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		1e-07
3ll6_A	337	Crystal Structure Of The Human Cyclin G Associated		1e-07
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		2e-07
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		2e-07
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		2e-07
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		2e-07
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		3e-07
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-07
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		3e-07
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		4e-07
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		4e-07
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		4e-07
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		4e-07
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		4e-07
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		4e-07
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		4e-07
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		4e-07
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		4e-07
3a4o_X	286	Lyn Kinase Domain Length = 286		4e-07
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		5e-07
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		5e-07
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		5e-07
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		5e-07
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		5e-07
2ac5_A	316	Structure Of Human Mnk2 Kinase Domain Mutant D228g		5e-07
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		5e-07
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		5e-07
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		5e-07
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		6e-07
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		6e-07
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		6e-07
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		6e-07
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		6e-07
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		6e-07
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		6e-07
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		6e-07
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		6e-07
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		6e-07
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		6e-07
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		6e-07
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		6e-07
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		7e-07
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		7e-07
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		7e-07
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		7e-07
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		7e-07
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		8e-07
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		8e-07
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		8e-07
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		9e-07
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		9e-07
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		9e-07
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		9e-07
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		9e-07
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		9e-07
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		9e-07
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		9e-07
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		9e-07
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		1e-06
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		1e-06
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		1e-06
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		1e-06
4g3g_A	350	Crystal Structure Of Murine Nf-kappab Inducing Kina		1e-06
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		1e-06
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		1e-06
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		1e-06
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		1e-06
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		1e-06
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		1e-06
4g3c_A	352	Crystal Structure Of Apo Murine Nf-kappab Inducing		1e-06
4g3f_A	336	Crystal Structure Of Murine Nf-kappab Inducing Kina		1e-06
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		1e-06
2rio_A	434	Structure Of The Dual Enzyme Ire1 Reveals The Basis		2e-06
2csn_A	297	Binary Complex Of Casein Kinase-1 With Cki7 Length		2e-06
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		2e-06
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		2e-06
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		2e-06
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		2e-06
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		2e-06
1eh4_A	298	Binary Complex Of Casein Kinase-1 From S. Pombe Wit		2e-06
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		2e-06
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		2e-06
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		2e-06
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		2e-06
3fbv_A	448	Crystal Structure Of The Oligomer Formed By The Kin		2e-06
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		2e-06
2v62_A	345	Structure Of Vaccinia-Related Kinase 2 Length = 345		2e-06
3sdj_A	448	Structure Of Rnase-Inactive Point Mutant Of Oligome		2e-06
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		2e-06
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		2e-06
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		3e-06
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		3e-06
2c47_A	313	Structure Of Casein Kinase 1 Gamma 2 Length = 313		3e-06
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		3e-06
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		3e-06
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		3e-06
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		3e-06
2izr_A	330	Structure Of Casein Kinase Gamma 3 In Complex With		3e-06
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-06
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		4e-06
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		4e-06
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		4e-06
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		4e-06
2chl_A	351	Structure Of Casein Kinase 1 Gamma 3 Length = 351		4e-06
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		4e-06
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		4e-06
4hgl_A	330	Crystal Structure Of Ck1g3 With Compound 1 Length =		4e-06
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		4e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		4e-06
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		4e-06
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		4e-06
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		4e-06
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		5e-06
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		5e-06
4h58_A	275	Braf In Complex With Compound 3 Length = 275		5e-06
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		5e-06
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		5e-06
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		5e-06
3lj0_A	434	Ire1 Complexed With Adp And Quercetin Length = 434		5e-06
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		6e-06
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		6e-06
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		7e-06
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		8e-06
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		8e-06
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		9e-06
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		9e-06
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		1e-05
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		1e-05
2cmw_A	310	Structure Of Human Casein Kinase 1 Gamma-1 In Compl		1e-05
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		1e-05
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		1e-05
4alu_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		1e-05
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-05
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		1e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		1e-05
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		1e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		1e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-05
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		1e-05
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		1e-05
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		1e-05
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		2e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		2e-05
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		2e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		2e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		2e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		2e-05
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-05
4fl2_A	636	Structural And Biophysical Characterization Of The		2e-05
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		2e-05
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-05
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		2e-05
4fl3_A	635	Structural And Biophysical Characterization Of The		2e-05
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-05
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		3e-05
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		3e-05
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		3e-05
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		3e-05
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		3e-05
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		4e-05
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		4e-05
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		4e-05
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		4e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		4e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		4e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		4e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		4e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		4e-05
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		5e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		5e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		5e-05
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		5e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		5e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		6e-05
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		6e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		6e-05
3bi6_A	287	Wee1 Kinase Complex With Inhibitor Pd352396 Length		6e-05
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		6e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		6e-05
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		6e-05
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		7e-05
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		7e-05
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		7e-05
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		7e-05
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		7e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		7e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		7e-05
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		7e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		7e-05
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		7e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		8e-05
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		8e-05
1x8b_A	289	Structure Of Human Wee1a Kinase: Kinase Domain Comp		8e-05
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		8e-05
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		8e-05
2in6_A	287	Wee1 Kinase Complex With Inhibitor Pd311839 Length		9e-05
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		9e-05
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		9e-05
2z2w_A	285	Humand Wee1 Kinase Complexed With Inhibitor Pf03357		9e-05
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-04
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		1e-04
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-04
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		1e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-04
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		1e-04
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		1e-04
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-04
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		1e-04
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-04
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		1e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		1e-04
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-04
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-04
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		2e-04
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		2e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		2e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		2e-04
3p23_A	432	Crystal Structure Of The Human Kinase And Rnase Dom		2e-04
2pzi_A	681	Crystal Structure Of Protein Kinase Pkng From Mycob		2e-04
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		2e-04
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		3e-04
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		3e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		3e-04
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-04
2h34_A	309	Apoenzyme Crystal Structure Of The Tuberculosis Ser		4e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		5e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		5e-04
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		5e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		5e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		5e-04
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		5e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		6e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		6e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		7e-04

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score =  327 bits (838), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 168/351 (47%), Positives = 239/351 (68%), Gaps = 16/351 (4%)
Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKEL-VAIKIVRSINKYREA 134
           DD +GH ++ +G+ L  RY I+S +GEGTFG+VV+C D+ +    VA+KI++++ KY+EA
Sbjct: 17  DDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEA 76
Query: 135 AMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
           A +EI+VL+++   D      CVQ+ +WFDY  H+CI FE LG S +DFL+ N+Y  +PI
Sbjct: 77  ARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPI 136
Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
             VR +  QL ++V F+H+ +L HTDLKPENIL V+++Y    +   L +   + S    
Sbjct: 137 HQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYN---LEKKRDERSV--- 190
Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
             KS+A++++DFGS TF+H+ HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCI+ E   
Sbjct: 191 --KSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYV 248
Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G  LFQTH+N EHLAMMER+LGP+P  M+ +   R +KYF RG RLDW +  ++   +R 
Sbjct: 249 GFTLFQTHDNREHLAMMERILGPIPSRMIRKT--RKQKYFYRG-RLDWDENTSAGRYVRE 305
Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             K LR   L  +  +H    L DL++ +L Y+PA+RL   EAL+HPFF R
Sbjct: 306 NCKPLR-RYLTSEAEEHHQ--LFDLIESMLEYEPAKRLTLGEALQHPFFAR 353

>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki Length = 381

Iteration: 1
 Score =  310 bits (795), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 157/350 (44%), Positives = 235/350 (67%), Gaps = 16/350 (4%)
Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSINKYREA 134
           DDK+GH V  IG+ L  RY I+  +GEGTFG+VVEC D+ + K  VA+KI+R++ KYREA
Sbjct: 35  DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREA 94
Query: 135 AMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
           A +EI+VL+++   D      CV + +WF++  H+CI FE LG + ++FL++N+++ +P+
Sbjct: 95  ARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPL 154
Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
             VR +  QL  ++ F+HE +L HTDLKPENIL V++E+  + +     +S ++ S    
Sbjct: 155 PHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEH---KSCEEKSV--- 208
Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
             K+++I++ DFGS TF+H+ H+ +V+TRHYR PEVIL LGW  PCD+WS+GCIL E   
Sbjct: 209 --KNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYR 266
Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G  LFQTHEN EHL MME++LGP+P HM+ R   R +KYF +G  L W + ++    ++ 
Sbjct: 267 GFTLFQTHENREHLVMMEKILGPIPSHMIHRT--RKQKYFYKGG-LVWDENSSDGRYVKE 323
Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
             K L+   ++   ++H    L DL++ +L +DPA+R+   EAL HPFF 
Sbjct: 324 NCKPLK-SYMLQDSLEHV--QLFDLMRRMLEFDPAQRITLAEALLHPFFA 370

>pdb|2EU9|A Chain A, Crystal Structure Of Clk3 Length = 355

Iteration: 1
 Score =  310 bits (794), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/350 (44%), Positives = 235/350 (67%), Gaps = 16/350 (4%)
Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSINKYREA 134
           DDK+GH V  IG+ L  RY I+  +GEGTFG+VVEC D+ + K  VA+KI+R++ KYREA
Sbjct: 3   DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREA 62
Query: 135 AMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
           A +EI+VL+++   D      CV + +WF++  H+CI FE LG + ++FL++N+++ +P+
Sbjct: 63  ARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPL 122
Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
             VR +  QL  ++ F+HE +L HTDLKPENIL V++E+  + +     +S ++ S    
Sbjct: 123 PHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNE---HKSCEEKSV--- 176
Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
             K+++I++ DFGS TF+H+ H+ +V+TRHYR PEVIL LGW  PCD+WS+GCIL E   
Sbjct: 177 --KNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYR 234
Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G  LFQTHEN EHL MME++LGP+P HM+ R   R +KYF +G  L W + ++    ++ 
Sbjct: 235 GFTLFQTHENREHLVMMEKILGPIPSHMIHRT--RKQKYFYKGG-LVWDENSSDGRYVKE 291
Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
             K L+   ++   ++H    L DL++ +L +DPA+R+   EAL HPFF 
Sbjct: 292 NCKPLK-SYMLQDSLEHV--QLFDLMRRMLEFDPAQRITLAEALLHPFFA 338

>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3 Length = 357

Iteration: 1
 Score =  310 bits (793), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/350 (44%), Positives = 235/350 (67%), Gaps = 16/350 (4%)
Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSINKYREA 134
           DDK+GH V  IG+ L  RY I+  +GEGTFG+VVEC D+ + K  VA+KI+R++ KYREA
Sbjct: 12  DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREA 71
Query: 135 AMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
           A +EI+VL+++   D      CV + +WF++  H+CI FE LG + ++FL++N+++ +P+
Sbjct: 72  ARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPL 131
Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
             VR +  QL  ++ F+HE +L HTDLKPENIL V++E+  + +     +S ++ S    
Sbjct: 132 PHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNE---HKSCEEKSV--- 185
Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
             K+++I++ DFGS TF+H+ H+ +V+TRHYR PEVIL LGW  PCD+WS+GCIL E   
Sbjct: 186 --KNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYR 243
Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G  LFQTHEN EHL MME++LGP+P HM+ R   R +KYF +G  L W + ++    ++ 
Sbjct: 244 GFTLFQTHENREHLVMMEKILGPIPSHMIHRT--RKQKYFYKGG-LVWDENSSDGRYVKE 300
Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
             K L+   ++   ++H    L DL++ +L +DPA+R+   EAL HPFF 
Sbjct: 301 NCKPLK-SYMLQDSLEHV--QLFDLMRRMLEFDPAQRITLAEALLHPFFA 347

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score =  305 bits (782), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/344 (46%), Positives = 227/344 (65%), Gaps = 16/344 (4%)
Query: 81  HYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKK-ELVAIKIVRSINKYREAAMIEI 139
           H +   G+ L+ RY I+  +GEG FG+VVEC D++     VA+KIV+++++Y EAA  EI
Sbjct: 3   HLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEI 62
Query: 140 DVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE 198
            VL+ L   D   T RCVQ+  WF++  HICIVFE LG S YDF+++N +  F +D +R+
Sbjct: 63  QVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRK 122
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
           +  Q+ +SV F+H  +L HTDLKPENIL V ++Y +  + K      +D     N     
Sbjct: 123 MAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKI----KRDERTLIN----P 174
Query: 259 AIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            IK++DFGS T++ + HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCIL+E   G  +F
Sbjct: 175 DIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVF 234
Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
            TH++ EHLAMMER+LGPLP HM+ +  +R  KYF    RLDW + +++   +    K L
Sbjct: 235 PTHDSKEHLAMMERILGPLPKHMIQKTRKR--KYFHHD-RLDWDEHSSAGRYVSRACKPL 291
Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           +   ++ Q V+H    L DL+Q +L YDPA+R+  REAL+HPFF
Sbjct: 292 K-EFMLSQDVEHER--LFDLIQKMLEYDPAKRITLREALKHPFF 332

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score =  301 bits (772), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 159/344 (46%), Positives = 225/344 (65%), Gaps = 16/344 (4%)
Query: 81  HYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKK-ELVAIKIVRSINKYREAAMIEI 139
           H +   G+ L+ RY I+  +GEG FG+VVEC D++     VA+KIV+++++Y EAA  EI
Sbjct: 3   HLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEI 62
Query: 140 DVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE 198
            VL+ L   D   T RCVQ+  WF++  HICIVFE LG S YDF+++N +  F +D +R+
Sbjct: 63  QVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRK 122
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
           +  Q+ +SV F+H  +L HTDLKPENIL V ++Y +  + K      +D     N     
Sbjct: 123 MAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKI----KRDERTLIN----P 174
Query: 259 AIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            IK++DFGS T++ + HS +V  RHYRAPEVIL LGW+ PCD+WS+GCIL+E   G  +F
Sbjct: 175 DIKVVDFGSATYDDEHHSTLVXXRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVF 234
Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
            TH++ EHLAMMER+LGPLP HM+ +  +R  KYF    RLDW + +++   +    K L
Sbjct: 235 PTHDSKEHLAMMERILGPLPKHMIQKTRKR--KYFHHD-RLDWDEHSSAGRYVSRACKPL 291
Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           +   ++ Q V+H    L DL+Q +L YDPA+R+  REAL+HPFF
Sbjct: 292 K-EFMLSQDVEHER--LFDLIQKMLEYDPAKRITLREALKHPFF 332

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score =  249 bits (637), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/353 (38%), Positives = 210/353 (59%), Gaps = 12/353 (3%)
Query: 73  WRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR 132
           ++ DD+  H+ +  G  L   + ++ KMG+GTFG+V+ C   + K+  A+K+VR+I KY 
Sbjct: 16  FQGDDEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYT 75
Query: 133 EAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFP 192
            +A IE D+L+++   DI     V+    F Y +H+C++FE LGPSLY+ + +N+Y  F 
Sbjct: 76  RSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFH 135
Query: 193 IDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK 252
           I+ ++    ++L+++ ++ ++ L HTDLKPENILL    + K        R   DG   +
Sbjct: 136 IEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSL---ITVRRVTDGKKIQ 192
Query: 253 NL-PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
               KS+ IKLIDFG  TF+   H  +++TR YRAPEVIL LGW+   D+WS GC+L EL
Sbjct: 193 IYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAEL 252
Query: 312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADR-RAEKYFRRGA-RLDWPDGATSRD 369
            +G  LF+THE++EHLAMME ++ P+P +M+  A +    KY  +   +L WP+ A+S +
Sbjct: 253 YTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSIN 312
Query: 370 SMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           S++ V K L L  +I   +        D L  +L+ DP  R    E L+H F 
Sbjct: 313 SIKHVKKCLPLYKIIKHEL------FCDFLYSILQIDPTLRPSPAELLKHKFL 359

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score =  202 bits (513), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 37/360 (10%)
Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA 135
           DD  G YV    +++  RY +L  +G+G+FGQVV+ +D++  + VA+K+VR+  ++   A
Sbjct: 81  DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQA 140
Query: 136 MIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPID 194
             EI +L+ L + D   T   + +   F +RNHIC+ FE L  +LY+ ++KN ++ F + 
Sbjct: 141 AEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLP 200
Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
           LVR+    +L+ +  +H+ R+IH DLKPENILL                           
Sbjct: 201 LVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQ------------------------ 236
Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
              S IK+IDFGS+ +EHQ     + +R YRAPEVILG  +  P D+WS+GCIL EL +G
Sbjct: 237 -GRSGIKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTG 295
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEK------YFRRGARLDWPDGATSR 368
             L    +  + LA M  +LG +P   ++ A +RA+       Y R        DG+   
Sbjct: 296 YPLLPGEDEGDQLACMIELLG-MPSQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVL 354
Query: 369 DSMRAVWKLLRLPNLIMQHVDHSAGD----LIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           +  R+    LR P    +  +   G      +D L+  L +DPA R+   +ALRHP+  R
Sbjct: 355 NGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRR 414

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score =  201 bits (511), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 37/360 (10%)
Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA 135
           DD  G YV    +++  RY +L  +G+G+FGQVV+ +D++  + VA+K+VR+  ++   A
Sbjct: 81  DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQA 140
Query: 136 MIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPID 194
             EI +L+ L + D   T   + +   F +RNHIC+ FE L  +LY+ ++KN ++ F + 
Sbjct: 141 AEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLP 200
Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
           LVR+    +L+ +  +H+ R+IH DLKPENILL                           
Sbjct: 201 LVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQ------------------------ 236
Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
              S IK+IDFGS+ +EHQ     + +R YRAPEVILG  +  P D+WS+GCIL EL +G
Sbjct: 237 -GRSGIKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTG 295
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEK------YFRRGARLDWPDGATSR 368
             L    +  + LA M  +LG +P   ++ A +RA+       Y R        DG+   
Sbjct: 296 YPLLPGEDEGDQLACMIELLG-MPSQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVL 354
Query: 369 DSMRAVWKLLRLPNLIMQHVDHSAGD----LIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           +  R+    LR P    +  +   G      +D L+  L +DPA R+   +ALRHP+  R
Sbjct: 355 NGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRR 414

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score =  201 bits (510), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 188/360 (52%), Gaps = 37/360 (10%)
Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA 135
           DD  G YV    +++  RY +L  +G+G FGQVV+ +D++  + VA+K+VR+  ++   A
Sbjct: 81  DDDQGSYVQVPHDHVAYRYEVLKVIGKGXFGQVVKAYDHKVHQHVALKMVRNEKRFHRQA 140
Query: 136 MIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPID 194
             EI +L+ L + D   T   + +   F +RNHIC+ FE L  +LY+ ++KN ++ F + 
Sbjct: 141 AEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLP 200
Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
           LVR+    +L+ +  +H+ R+IH DLKPENILL                           
Sbjct: 201 LVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQ------------------------ 236
Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
              S IK+IDFGS+ +EHQ     + +R YRAPEVILG  +  P D+WS+GCIL EL +G
Sbjct: 237 -GRSGIKVIDFGSSCYEHQRVYXXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTG 295
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEK------YFRRGARLDWPDGATSR 368
             L    +  + LA M  +LG +P   ++ A +RA+       Y R        DG+   
Sbjct: 296 YPLLPGEDEGDQLACMIELLG-MPXQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVL 354
Query: 369 DSMRAVWKLLRLPNLIMQHVDHSAGD----LIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           +  R+    LR P    +  +   G      +D L+  L +DPA R+   +ALRHP+  R
Sbjct: 355 NGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRR 414

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 192/361 (53%), Gaps = 54/361 (14%)
Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA 146
           GE    RY I S +G+G+FGQVV+ +D  ++E VAIKI+++   +   A IE+ +L+ + 
Sbjct: 49  GEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMN 108
Query: 147 RHDIG-GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           +HD       V ++  F +RNH+C+VFE L  +LYD LR  ++R   ++L R+  +Q+  
Sbjct: 109 KHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCT 168
Query: 206 SVAFMH--ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           ++ F+   EL +IH DLKPENILL +                         PK SAIK++
Sbjct: 169 ALLFLATPELSIIHCDLKPENILLCN-------------------------PKRSAIKIV 203
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
           DFGS+    Q     + +R YR+PEV+LG+ ++   D+WS+GCILVE+ +GE LF     
Sbjct: 204 DFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANE 263
Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGA----TSRDSMRAVW--KL 377
           ++ +  +  VLG  P H++ +A  +A K+F +      PDG      ++D  R       
Sbjct: 264 VDQMNKIVEVLGIPPAHILDQAP-KARKFFEK-----LPDGTWNLKKTKDGKREYKPPGT 317
Query: 378 LRLPNLI-----------MQHVDHSAGDLI---DLLQGLLRYDPAERLKAREALRHPFFT 423
            +L N++                H+  D +   DL+  +L YDP  R++   AL+H FF 
Sbjct: 318 RKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFK 377
Query: 424 R 424
           +
Sbjct: 378 K 378

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 54/361 (14%)
Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA 146
           GE    RY I S +G+G+FGQVV+ +D  ++E VAIKI+++   +   A IE+ +L+ + 
Sbjct: 30  GEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMN 89
Query: 147 RHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           +HD       V ++  F +RNH+C+VFE L  +LYD LR  ++R   ++L R+  +Q+  
Sbjct: 90  KHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCT 149
Query: 206 SVAFMH--ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           ++ F+   EL +IH DLKPENILL +                         PK SAIK++
Sbjct: 150 ALLFLATPELSIIHCDLKPENILLCN-------------------------PKRSAIKIV 184
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
           DFGS+    Q     + +R YR+PEV+LG+ ++   D+WS+GCILVE+ +GE LF     
Sbjct: 185 DFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANE 244
Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           ++ +  +  VLG  P H++ +A  +A K+F +      PDG  +    +   +  + P  
Sbjct: 245 VDQMNKIVEVLGIPPAHILDQAP-KARKFFEK-----LPDGTWNLKKTKDGKREYKPPGT 298
Query: 384 IMQH-----------------VDHSAGDLI---DLLQGLLRYDPAERLKAREALRHPFFT 423
              H                   H+  D +   DL+  +L YDP  R++   AL+H FF 
Sbjct: 299 RKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFK 358
Query: 424 R 424
           +
Sbjct: 359 K 359

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score =  191 bits (484), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 188/361 (52%), Gaps = 54/361 (14%)
Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA 146
           GE    RY I S +G+G+FGQVV+ +D  ++E VAIKI+++   +   A IE+ +L+ + 
Sbjct: 49  GEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMN 108
Query: 147 RHDIG-GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           +HD       V ++  F +RNH+C+VFE L  +LYD LR  ++R   ++L R+  +Q+  
Sbjct: 109 KHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCT 168
Query: 206 SVAFMH--ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           ++ F+   EL +IH DLKPENILL +                         PK  AIK++
Sbjct: 169 ALLFLATPELSIIHCDLKPENILLCN-------------------------PKRXAIKIV 203
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
           DFGS+    Q     + +R YR+PEV+LG+ ++   D+WS+GCILVE+ +GE LF     
Sbjct: 204 DFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANE 263
Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           ++ +  +  VLG  P H++ +A  +A K+F +      PDG  +    +   +  + P  
Sbjct: 264 VDQMNKIVEVLGIPPAHILDQAP-KARKFFEK-----LPDGTWNLKKTKDGKREYKPPGT 317
Query: 384 IMQH-----------------VDHSAGDLI---DLLQGLLRYDPAERLKAREALRHPFFT 423
              H                   H+  D +   DL+  +L YDP  R++   AL+H FF 
Sbjct: 318 RKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFK 377
Query: 424 R 424
           +
Sbjct: 378 K 378

>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its Substrate AsfSF2 Length = 381

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 194/387 (50%), Gaps = 46/387 (11%)
Query: 75  PDD--KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR 132
           P+D  K G+++  IG+    RY ++ K+G G F  V   +D + K+ VA+K+V+S   Y 
Sbjct: 2   PNDYCKGGYHLVKIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYT 61
Query: 133 EAAMIEIDVLQRLARHDIGGTR---CVQIRNWFDYR----NHICIVFEKLGPSLYDFLRK 185
           E A+ EI +L+ +   D         VQ+ + F        HIC+VFE LG  L  ++ K
Sbjct: 62  ETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIK 121
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPENILL-VSAEYVK-----VPDY 238
           ++Y+  P+  V+++ +Q+L+ + ++H + R+IHTD+KPENILL V+ +Y++       ++
Sbjct: 122 SNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEW 181
Query: 239 KFLSRSSKDGSYFKNLPKSSA----------------IKLIDFGSTTFEHQDHSYVVSTR 282
           +        GS     P ++                 +K+ D G+  + H+  +  + TR
Sbjct: 182 QRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTR 241
Query: 283 HYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE------HLAMMERVLGP 336
            YR+ EV++G G+N P D+WS  C+  EL +G+ LF+ H   E      H+A++  +LG 
Sbjct: 242 QYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGK 301
Query: 337 LPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI 396
           +P  +++ A + ++++F +        G     +    W L  +     +     A    
Sbjct: 302 VPRKLIV-AGKYSKEFFTK-------KGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFT 353
Query: 397 DLLQGLLRYDPAERLKAREALRHPFFT 423
           D L  +L   P +R  A E LRHP+  
Sbjct: 354 DFLLPMLELIPEKRATAAECLRHPWLN 380

>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide Length = 397

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 194/387 (50%), Gaps = 46/387 (11%)
Query: 75  PDD--KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR 132
           P+D  K G+++  IG+    RY ++ K+G G F  V   +D + K+ VA+K+V+S   Y 
Sbjct: 18  PNDYCKGGYHLVKIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYT 77
Query: 133 EAAMIEIDVLQRLARHDIGGTR---CVQIRNWFDYR----NHICIVFEKLGPSLYDFLRK 185
           E A+ EI +L+ +   D         VQ+ + F        HIC+VFE LG  L  ++ K
Sbjct: 78  ETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIK 137
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPENILL-VSAEYVK-----VPDY 238
           ++Y+  P+  V+++ +Q+L+ + ++H + R+IHTD+KPENILL V+ +Y++       ++
Sbjct: 138 SNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEW 197
Query: 239 KFLSRSSKDGSYFKNLPKSSA----------------IKLIDFGSTTFEHQDHSYVVSTR 282
           +        GS     P ++                 +K+ D G+  + H+  +  + TR
Sbjct: 198 QRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTR 257
Query: 283 HYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE------HLAMMERVLGP 336
            YR+ EV++G G+N P D+WS  C+  EL +G+ LF+ H   E      H+A++  +LG 
Sbjct: 258 QYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGK 317
Query: 337 LPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI 396
           +P  +++ A + ++++F +        G     +    W L  +     +     A    
Sbjct: 318 VPRKLIV-AGKYSKEFFTK-------KGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFT 369
Query: 397 DLLQGLLRYDPAERLKAREALRHPFFT 423
           D L  +L   P +R  A E LRHP+  
Sbjct: 370 DFLLPMLELIPEKRATAAECLRHPWLN 396

>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific Kinase 2 (Srpk2) Bound To Purvalanol B Length = 389

Iteration: 1
 Score =  165 bits (418), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 187/385 (48%), Gaps = 52/385 (13%)
Query: 78  KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI 137
           K G++   IG+    RY ++ K+G G F  V  C+D + K  VA+K+V+S   Y E A+ 
Sbjct: 17  KGGYHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTETALD 76
Query: 138 EIDVLQRLARHDIGGTR---CVQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRS 190
           EI +L+ +   D         VQ+ + F        H+C+VFE LG  L  ++ K++Y+ 
Sbjct: 77  EIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQG 136
Query: 191 FPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPENILL-VSAEYVK-----VPDYKFLSR 243
            P+  V+ + RQ+L+ + ++H + ++IHTD+KPENIL+ V   YV+       +++    
Sbjct: 137 LPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDDAYVRRMAAEATEWQKAGA 196
Query: 244 SSKDGSYFKNLPKSSA--------------IKLIDFGSTTFEHQDHSYVVSTRHYRAPEV 289
               GS     P +                +K+ D G+  + H+  +  + TR YR+ EV
Sbjct: 197 PPPSGSAVSTAPAADLLVNPLDPRNADKIRVKIADLGNACWVHKHFTEDIQTRQYRSIEV 256
Query: 290 ILGLGWNYPCDLWSVGCILVELCSGEALFQTHE------NLEHLAMMERVLGPLPHHMVI 343
           ++G G++ P D+WS  C+  EL +G+ LF+ H       + +H+A +  +LG +P H  +
Sbjct: 257 LIGAGYSTPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAHIIELLGSIPRHFAL 316
Query: 344 RADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL--LRLPNLIMQHVD---HSAGDLIDL 398
                 E + RRG              +R + KL    L +++++        A    D 
Sbjct: 317 SGKYSREFFNRRG-------------ELRHITKLKPWSLFDVLVEKYGWPHEDAAQFTDF 363
Query: 399 LQGLLRYDPAERLKAREALRHPFFT 423
           L  +L   P +R  A E LRHP+  
Sbjct: 364 LIPMLEMVPEKRASAGECLRHPWLN 388

>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase In Yeast Length = 373

Iteration: 1
 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 176/352 (50%), Gaps = 56/352 (15%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD--- 149
           RY ++ K+G G F  V    D      VA+KIVR    Y EAA  EI +LQR+   D   
Sbjct: 20  RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTK 79
Query: 150 ---IGGTRCVQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
              +G    +++ + F+++     H+ +VFE LG +L   ++K  +R  P+  V+++ +Q
Sbjct: 80  EDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQ 139
Query: 203 LLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           LL  + +MH    +IHTD+KPEN+L+   E V  P+               NL +   IK
Sbjct: 140 LLLGLDYMHRRCGIIHTDIKPENVLM---EIVDSPE---------------NLIQ---IK 178
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
           + D G+  +  + ++  + TR YR+PEV+LG  W    D+WS  C++ EL +G+ LF+  
Sbjct: 179 IADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD 238
Query: 322 E------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
           E      + +H+A +  +LG LP ++ +R  +    +F             SR  +R + 
Sbjct: 239 EGHSYTKDDDHIAQIIELLGELPSYL-LRNGKYTRTFF------------NSRGLLRNIS 285
Query: 376 KLLRLP--NLIMQHVDHS---AGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           KL   P  +++ +    S   A ++ D L  +L+ DP +R  A   + HP+ 
Sbjct: 286 KLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 337

>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With Bound Adp Length = 373

Iteration: 1
 Score =  144 bits (362), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 176/352 (50%), Gaps = 56/352 (15%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD--- 149
           RY ++ K+G G F  V    D      VA+KIVR    Y EAA  EI +LQR+   D   
Sbjct: 20  RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTK 79
Query: 150 ---IGGTRCVQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
              +G    +++ + F+++     H+ +VFE LG +L   ++K  +R  P+  V+++ +Q
Sbjct: 80  EDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQ 139
Query: 203 LLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           LL  + +MH    +IHTD+KPEN+L+   E V  P+               NL +   IK
Sbjct: 140 LLLGLDYMHRRCGIIHTDIKPENVLM---EIVDSPE---------------NLIQ---IK 178
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
           + D G+  +  + ++  + TR YR+PEV+LG  W    D+WS  C++ EL +G+ LF+  
Sbjct: 179 IADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD 238
Query: 322 E------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
           E      + +H+A +  +LG LP ++ +R  +    +F             SR  +R + 
Sbjct: 239 EGHSYTKDDDHIAQIIELLGELPSYL-LRNGKYTRTFF------------NSRGLLRNIS 285
Query: 376 KLLRLP--NLIMQHVDHS---AGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           KL   P  +++ +    S   A ++ D L  +L+ DP +R  A   + HP+ 
Sbjct: 286 KLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 337

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 159/344 (46%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L DF+  ++    P+ L++    QLL+ +AF 
Sbjct: 65  -----VKLLDVIHTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKPEN+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 120 HSHRVLHRDLKPENLLINTEGAIKLADFG-LARA--------------------FGVPVR 158
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 159 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 213
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 214 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 258
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 259 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 292

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 159/344 (46%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 8   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L DF+  ++    P+ L++    QLL+ +AF 
Sbjct: 68  -----VKLLDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 161
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 162 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 216
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 217 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 261
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 262 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 295

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 159/344 (46%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 7   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 66
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L DF+  ++    P+ L++    QLL+ +AF 
Sbjct: 67  -----VKLLDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 122 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 160
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 161 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 215
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 216 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 260
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 261 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 294

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 8   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 68  -----VKLLDVIHTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKPEN+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 123 HSHRVLHRDLKPENLLINTEGAIKLADFG-LARA--------------------FGVPVR 161
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 162 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 216
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 217 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 261
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 262 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 295

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score =  117 bits (294), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 6   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 65
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 66  -----VKLLDVIHTENKLYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKPEN+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 121 HSHRVLHRDLKPENLLINTEGAIKLADFG-LARA--------------------FGVPVR 159
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 160 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 214
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 215 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 259
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 260 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 293

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 7   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 66
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 67  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKPEN+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 122 HSHRVLHRDLKPENLLINTEGAIKLADFG-LARA--------------------FGVPVR 160
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 161 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 215
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 216 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 260
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 261 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 294

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 6   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 65
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 66  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKPEN+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 121 HSHRVLHRDLKPENLLINTEGAIKLADFG-LARA--------------------FGVPVR 159
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 160 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 214
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 215 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 259
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 260 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 293

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 155/345 (44%), Gaps = 67/345 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 12  FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 71
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 72  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 126
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG---S 267
           H  R++H DLKP+N+L+ +                             AIKL DFG   +
Sbjct: 127 HSHRVLHRDLKPQNLLINT---------------------------EGAIKLADFGLARA 159
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ 
Sbjct: 160 FGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ 219
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           L  + R LG  P  +V         Y   F + AR D+       D              
Sbjct: 220 LFRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE------------- 265
Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                     D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 266 ----------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 299

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 155/345 (44%), Gaps = 67/345 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 12  FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 71
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 72  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 126
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG---S 267
           H  R++H DLKP+N+L+ +                             AIKL DFG   +
Sbjct: 127 HSHRVLHRDLKPQNLLINT---------------------------EGAIKLADFGLARA 159
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ 
Sbjct: 160 FGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQ 219
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           L  + R LG  P  +V         Y   F + AR D+       D              
Sbjct: 220 LFRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE------------- 265
Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                     D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 266 ----------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 299

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 161/335 (48%), Gaps = 55/335 (16%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINK--YREAAMIEIDVLQRLARHD 149
           +Y  + K+GEG++G V +C + +  ++VAIK  + S +    ++ A+ EI +L++L   +
Sbjct: 4   KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPN 63
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           +     V +   F  +  + +VFE    ++   L +   R  P  LV+ +  Q L++V F
Sbjct: 64  L-----VNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQ-RGVPEHLVKSITWQTLQAVNF 117
Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H+   IH D+KPENIL+     +K+ D+ F    +    Y+ +                
Sbjct: 118 CHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDD---------------- 161
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                    V+TR YR+PE+++G   +  P D+W++GC+  EL SG  L+    +++ L 
Sbjct: 162 --------EVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLY 213
Query: 329 MMERVLGPL-PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
           ++ + LG L P H  + +     +YF  G ++  P+     +        L+ PN+    
Sbjct: 214 LIRKTLGDLIPRHQQVFS---TNQYF-SGVKIPDPEDMEPLE--------LKFPNI---- 257
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
               +   + LL+G L  DP ERL   + L HP+F
Sbjct: 258 ----SYPALGLLKGCLHMDPTERLTCEQLLHHPYF 288

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 8   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 68  -----VKLLDVIHTENKLYLVFEFLHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 161
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 162 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 216
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 217 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 261
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 262 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 295

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 6   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 65
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 66  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 121 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 158
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 159 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 216
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 217 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 259
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 260 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 293

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 4   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 64  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 156
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 157 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 214
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 215 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 257
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 258 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 291

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 8   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 68  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 161
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 162 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 216
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 217 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 261
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 262 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 295

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 65  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 157
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 158 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 215
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 216 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 258
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 259 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 292

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 7   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 66
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 67  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 122 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 160
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 161 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 215
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 216 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 260
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 261 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 294

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 8   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 68  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 161
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 162 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 216
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 217 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 261
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 262 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 295

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 7   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 66
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 67  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 121
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 122 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 160
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 161 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 215
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 216 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 260
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 261 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 294

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 65  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 157
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 158 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 215
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 216 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 258
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 259 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 292

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 4   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 64  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 156
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 157 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 214
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 215 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 257
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 258 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 291

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 65  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 157
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 158 --RTYTHEVVTLWYRAPEILLGXKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 215
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 216 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 258
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 259 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 292

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 9   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 68
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 69  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 123
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 124 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 161
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 162 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 219
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 220 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 262
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 263 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 296

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 9   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 68
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 69  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 123
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 124 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 162
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 163 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 217
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 218 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 262
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 263 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 296

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 8   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE +   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 68  -----VKLLDVIHTENKLYLVFEHVDQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 161
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 162 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 216
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 217 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 261
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 262 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 295

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 65  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 158
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 159 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 213
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 214 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 258
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 259 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 292

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 6   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 65
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 66  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 121 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 159
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 160 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 214
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 215 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 259
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 260 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 293

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 65  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 158
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 159 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 213
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 214 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 258
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 259 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 292

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 6   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 65
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 66  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 120
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 121 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 159
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 160 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 214
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 215 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 259
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 260 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 293

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 4   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 64  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 157
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 158 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 212
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 213 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 257
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 258 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 291

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 4   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 64  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 157
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 158 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 212
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 213 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 257
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 258 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 291

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 4   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE +   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 64  -----VKLLDVIHTENKLYLVFEHVHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 156
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 157 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 214
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 215 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 257
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 258 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 291

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 65/344 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 65  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 158
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 159 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 213
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 214 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 258
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 259 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 292

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 154/338 (45%), Gaps = 64/338 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 65  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPVR 158
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
           T+ H+     V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L
Sbjct: 159 TYXHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQL 213
Query: 328 AMMERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             + R LG  P  +V         Y   F + AR D+       D               
Sbjct: 214 FRIFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE-------------- 258
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                    D   LL  +L YDP +R+ A+ AL HPFF
Sbjct: 259 ---------DGRSLLSQMLHYDPNKRISAKAALAHPFF 287

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +I
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ ++F 
Sbjct: 65  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLSFC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 157
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 158 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 215
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 216 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 258
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 259 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 292

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 157/342 (45%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+  +R           A+ EI +L+ L   +I
Sbjct: 5   FQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 65  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 120 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 157
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 158 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 215
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 216 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 258
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 259 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 292

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 157/342 (45%), Gaps = 61/342 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           ++ + K+GEGT+G V +  +    E+VA+  +R           A+ EI +L+ L   +I
Sbjct: 4   FQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF 
Sbjct: 64  -----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC 118
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R++H DLKP+N+L+ +   +K+ D+  L+R+                    FG    
Sbjct: 119 HSHRVLHRDLKPQNLLINTEGAIKLADFG-LARA--------------------FGVPV- 156
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             + +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L  
Sbjct: 157 --RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 214
Query: 330 MERVLGPLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           + R LG  P  +V         Y   F + AR D+       D                 
Sbjct: 215 IFRTLG-TPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDE---------------- 257
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                  D   LL  +L YDP +R+ A+ AL HPFF +DV +
Sbjct: 258 -------DGRSLLSQMLHYDPNKRISAKAALAHPFF-QDVTK 291

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 160/340 (47%), Gaps = 54/340 (15%)
Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARH 148
           + +++ L K+G GT+  V +  +      VA+K V+  S       A+ EI +++ L   
Sbjct: 4   SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHE 63
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK----NSYRSFPIDLVRELGRQLL 204
           +I     V++ +     N + +VFE +   L  ++      N+ R   ++LV+    QLL
Sbjct: 64  NI-----VRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLL 118
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           + +AF HE +++H DLKP+N+L+     +K+ D+               L ++  I +  
Sbjct: 119 QGLAFCHENKILHRDLKPQNLLINKRGQLKLGDF--------------GLARAFGIPVNT 164
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHEN 323
           F S           V T  YRAP+V++G   ++   D+WS GCIL E+ +G+ LF    +
Sbjct: 165 FSSE----------VVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTND 214
Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
            E L ++  ++G  P+  +  +  +  KY     +         RD          L  +
Sbjct: 215 EEQLKLIFDIMG-TPNESLWPSVTKLPKYNPNIQQ------RPPRD----------LRQV 257
Query: 384 IMQHVDHSA-GDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           +  H      G+L+D L GLL+ +P  RL A++AL HP+F
Sbjct: 258 LQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWF 297

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 156/350 (44%), Gaps = 68/350 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFD-NEKKELVAIKIVR--------SINKYREAAMIEIDVLQ 143
           +Y  ++++GEG +G+V +  D       VA+K VR         ++  RE A++    L+
Sbjct: 12  QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH--LE 69
Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
                ++     V   +  D    + +VFE +   L  +L K      P + ++++  QL
Sbjct: 70  TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQL 129
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L  + F+H  R++H DLKP+NIL+ S                           S  IKL 
Sbjct: 130 LRGLDFLHSHRVVHRDLKPQNILVTS---------------------------SGQIKLA 162
Query: 264 DFGST---TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
           DFG     +F+    S VV T  YRAPEV+L   +  P DLWSVGCI  E+   + LF+ 
Sbjct: 163 DFGLARIYSFQMALTSVVV-TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRG 221
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP-DGATSRDSMRAVWKLLR 379
             +++ L  +  V+G LP                     DWP D A  R +  +  K  +
Sbjct: 222 SSDVDQLGKILDVIG-LP------------------GEEDWPRDVALPRQAFHS--KSAQ 260
Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC 429
                +  +D       DLL   L ++PA+R+ A  AL HP+F +D+ RC
Sbjct: 261 PIEKFVTDIDELGK---DLLLKCLTFNPAKRISAYSALSHPYF-QDLERC 306

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 38  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 93
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + +V   +G  LY  L+     +   D +    
Sbjct: 94  ILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSN---DHICYFL 150
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 151 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TXDL 183
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 184 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 243
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 244 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 292
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 293 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 335

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 156/350 (44%), Gaps = 68/350 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFD-NEKKELVAIKIVR--------SINKYREAAMIEIDVLQ 143
           +Y  ++++GEG +G+V +  D       VA+K VR         ++  RE A++    L+
Sbjct: 12  QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH--LE 69
Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
                ++     V   +  D    + +VFE +   L  +L K      P + ++++  QL
Sbjct: 70  TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQL 129
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L  + F+H  R++H DLKP+NIL+ S                           S  IKL 
Sbjct: 130 LRGLDFLHSHRVVHRDLKPQNILVTS---------------------------SGQIKLA 162
Query: 264 DFGST---TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
           DFG     +F+    S VV T  YRAPEV+L   +  P DLWSVGCI  E+   + LF+ 
Sbjct: 163 DFGLARIYSFQMALTSVVV-TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRG 221
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP-DGATSRDSMRAVWKLLR 379
             +++ L  +  V+G LP                     DWP D A  R +  +  K  +
Sbjct: 222 SSDVDQLGKILDVIG-LP------------------GEEDWPRDVALPRQAFHS--KSAQ 260
Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC 429
                +  +D       DLL   L ++PA+R+ A  AL HP+F +D+ RC
Sbjct: 261 PIEKFVTDIDELGK---DLLLKCLTFNPAKRISAYSALSHPYF-QDLERC 306

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 22  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYXQRTLREIK 77
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 78  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 134
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 135 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TXDL 167
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 168 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 227
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 228 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 276
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 277 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 319

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 20  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 75
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L      +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 76  ILLAFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 132
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +S +
Sbjct: 133 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TSDL 165
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 166 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 225
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 226 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCGINLKARNYL-----LSLPHKN------K 274
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 275 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLAQ 317

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 20  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 75
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 76  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 132
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 133 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 165
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 166 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 225
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 226 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 274
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 275 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 317

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 26  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 81
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 82  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 138
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 139 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 171
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 172 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 231
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 232 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 280
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 281 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 323

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 18  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 73
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 74  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 130
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 131 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 163
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 164 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 223
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 224 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 272
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 273 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 315

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 18  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 73
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 74  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 130
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 131 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TXDL 163
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 164 KIXDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 223
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 224 NRPIFPGKHYLDQLNHILGILGSPSQEDLNXIINLKARNYL-----LSLPHKN------K 272
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 273 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 315

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 18  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 73
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 74  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 130
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 131 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TXDL 163
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 164 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 223
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 224 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 272
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 273 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 315

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 18  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 73
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 74  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 130
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 131 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TXDL 163
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 164 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 223
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 224 NRPIFPGKHYLDQLNHILGILGSPSQEDLNXIINLKARNYL-----LSLPHKN------K 272
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 273 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 315

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 153/339 (45%), Gaps = 61/339 (17%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR------SINKYREAAMIEIDVLQRLA 146
           RY  L  +GEG F  V +  D    ++VAIK ++      + +     A+ EI +LQ L+
Sbjct: 11  RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELS 70
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             +I G     + + F ++++I +VF+ +   L   ++ NS    P   ++      L+ 
Sbjct: 71  HPNIIG-----LLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTP-SHIKAYMLMTLQG 124
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H+  ++H DLKP N+LL     +K+ D+               L KS       FG
Sbjct: 125 LEYLHQHWILHRDLKPNNLLLDENGVLKLADF--------------GLAKS-------FG 163
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
           S    ++ + + V TR YRAPE++ G   +    D+W+VGCIL EL           +L+
Sbjct: 164 SP---NRAYXHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD 220
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            L  +   LG                         WPD  +  D +         P + +
Sbjct: 221 QLTRIFETLG-------------------TPTEEQWPDMCSLPDYV----TFKSFPGIPL 257
Query: 386 QHVDHSAGD-LIDLLQGLLRYDPAERLKAREALRHPFFT 423
            H+  +AGD L+DL+QGL  ++P  R+ A +AL+  +F+
Sbjct: 258 HHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFS 296

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 18  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 73
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 74  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 130
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 131 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 163
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 164 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 223
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 224 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 272
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 273 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 315

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 38  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 93
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 94  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 150
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 151 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 183
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 184 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 243
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 244 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 292
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 293 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 335

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 23  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIK 78
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 79  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 135
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 136 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 168
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 169 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 228
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 229 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 277
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 278 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 320

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 24  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIK 79
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 80  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 136
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 137 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 169
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 170 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 229
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 230 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 278
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 279 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 321

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 15  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIK 70
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 71  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 127
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 128 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 160
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 161 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 220
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 221 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 269
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 270 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 312

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score =  108 bits (271), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 22  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIK 77
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 78  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 134
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 135 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 167
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 168 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 227
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 228 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 276
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 277 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 319

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 22  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIK 77
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 78  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 134
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 135 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TXDL 167
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 168 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 227
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 228 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 276
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 277 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 319

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 16  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIK 71
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 72  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 128
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 129 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 161
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 162 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 221
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 222 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 270
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 271 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 313

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 22  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIK 77
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 78  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 134
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 135 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 167
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 168 KICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 227
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 228 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 276
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 277 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 319

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 23  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIK 78
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 79  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 135
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 136 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 168
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 169 KICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 228
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 229 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 277
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 278 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 320

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 16  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIK 71
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 72  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 128
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 129 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 161
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 162 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 221
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 222 NRPIFPGKHYLDQLNHILGILGSPEQEDLNCIINLKARNYL-----LSLPHKN------K 270
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 271 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 313

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score =  108 bits (269), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 22  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIK 77
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 78  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKCQHLSN---DHICYFL 134
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 135 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 167
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 168 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 227
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 228 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 276
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 277 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 319

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 149/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAI+ +       Y +  + EI 
Sbjct: 22  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIRKISPFEHQTYCQRTLREIK 77
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L R    +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 78  ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 134
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 135 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 167
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 168 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 227
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 228 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 276
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 277 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLEQ 319

>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum In Complex With Indirubin E804 Length = 383

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 153/378 (40%), Gaps = 98/378 (25%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR 147
           E  + +Y +   +G G+FG V E FD E  +  A+K V    +Y+     E+D+++ L  
Sbjct: 3   ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNR---ELDIMKVLDH 59
Query: 148 --------------------------HDIGGTRCVQIRNWF-------DYRNHICIVFEK 174
                                     H+  G +   + N             ++ ++ E 
Sbjct: 60  VNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEY 119
Query: 175 LGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEY 232
           +  +L+  L+    S RS P++L+     QL  +V F+H L + H D+KP+N+L+ S   
Sbjct: 120 VPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNS--- 176
Query: 233 VKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT--FEHQDHSYVVSTRHYRAPEVI 290
                                  K + +KL DFGS       +     + +R YRAPE++
Sbjct: 177 -----------------------KDNTLKLCDFGSAKKLIPSEPSVAXICSRFYRAPELM 213
Query: 291 LGLGWNYPC-DLWSVGCILVELCSGEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRR 348
           LG     P  DLWS+GC+  EL  G+ LF    +++ L  + +++G P    M+      
Sbjct: 214 LGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHY 273
Query: 349 AEKYFRRGARLDW----PDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR 404
            E  F      DW    P+G  S                            IDLL+ +LR
Sbjct: 274 TEVRFPTLKAKDWRKILPEGTPSL--------------------------AIDLLEQILR 307
Query: 405 YDPAERLKAREALRHPFF 422
           Y+P  R+   EA+ HPFF
Sbjct: 308 YEPDLRINPYEAMAHPFF 325

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 151/343 (44%), Gaps = 67/343 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFD-NEKKELVAIKIVR--------SINKYREAAMIEIDVLQ 143
           +Y  ++++GEG +G+V +  D       VA+K VR         ++  RE A++    L+
Sbjct: 12  QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH--LE 69
Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
                ++     V   +  D    + +VFE +   L  +L K      P + ++++  QL
Sbjct: 70  TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQL 129
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L  + F+H  R++H DLKP+NIL+ S                           S  IKL 
Sbjct: 130 LRGLDFLHSHRVVHRDLKPQNILVTS---------------------------SGQIKLA 162
Query: 264 DFGST---TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
           DFG     +F+    S VV T  YRAPEV+L   +  P DLWSVGCI  E+   + LF+ 
Sbjct: 163 DFGLARIYSFQMALTSVVV-TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRG 221
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP-DGATSRDSMRAVWKLLR 379
             +++ L  +  V+G LP                     DWP D A  R +  +  K  +
Sbjct: 222 SSDVDQLGKILDVIG-LP------------------GEEDWPRDVALPRQAFHS--KSAQ 260
Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                +  +D       DLL   L ++PA+R+ A  AL HP+F
Sbjct: 261 PIEKFVTDIDELGK---DLLLKCLTFNPAKRISAYSALSHPYF 300

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 148/352 (42%), Gaps = 64/352 (18%)
Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEID 140
           VF +G    PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI 
Sbjct: 20  VFDVG----PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIK 75
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG 200
           +L      +I G   +      +    + IV + +   LY  L+     +   D +    
Sbjct: 76  ILLAFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSN---DHICYFL 132
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L  + ++H   ++H DLKP N+LL +                           +  +
Sbjct: 133 YQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TCDL 165
Query: 261 KLIDFGSTTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCS 313
           K+ DFG       DH +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S
Sbjct: 166 KICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLS 225
Query: 314 GEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
              +F     L+ L  +  +LG P    +    + +A  Y      L  P         +
Sbjct: 226 NRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYL-----LSLPHKN------K 274
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             W      N +  + D  A   +DLL  +L ++P +R++  +AL HP+  +
Sbjct: 275 VPW------NRLFPNADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYLAQ 317

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 145/346 (41%), Gaps = 60/346 (17%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLA 146
           ++ PRY  L  +GEG +G V   +D+ +K  VAIK +       Y +  + EI +L R  
Sbjct: 40  DVGPRYTQLQYIGEGAYGMVSSAYDHVRKTRVAIKKISPFEHQTYCQRTLREIQILLRFR 99
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             ++ G R +   +  +    + IV + +   LY  L+     +   D +     Q+L  
Sbjct: 100 HENVIGIRDILRASTLEAMRDVYIVQDLMETDLYKLLKSQQLSN---DHICYFLYQILRG 156
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H   ++H DLKP N+L+ +                           +  +K+ DFG
Sbjct: 157 LKYIHSANVLHRDLKPSNLLINT---------------------------TCDLKICDFG 189
Query: 267 STTFEHQDHSYV------VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQ 319
                  +H +       V+TR YRAPE++L   G+    D+WSVGCIL E+ S   +F 
Sbjct: 190 LARIADPEHDHTGFLTEXVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFP 249
Query: 320 THENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
               L+ L  +  +LG P    +    + +A  Y +           +     +  W  L
Sbjct: 250 GKHYLDQLNHILGILGSPSQEDLNCIINMKARNYLQ-----------SLPSKTKVAWAKL 298
Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                       S    +DLL  +L ++P +R+   EAL HP+  +
Sbjct: 299 ---------FPKSDSKALDLLDRMLTFNPNKRITVEEALAHPYLEQ 335

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 165/347 (47%), Gaps = 39/347 (11%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMI--EIDVLQRLARHD 149
           +Y ++ K+G+G +G V +  D    E+VA+K I  +     +A     EI +L  L+ H+
Sbjct: 10  KYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHE 69
Query: 150 IGGTRCVQIRNWF--DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
                 V + N    D    + +VF+ +   L+  +R N         V     QL++ +
Sbjct: 70  ----NIVNLLNVLRADNDRDVYLVFDYMETDLHAVIRANILEPVHKQYV---VYQLIKVI 122
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++H   L+H D+KP NILL +  +VKV D+  LSRS      F N+ + +    +    
Sbjct: 123 KYLHSGGLLHRDMKPSNILLNAECHVKVADFG-LSRS------FVNIRRVTNNIPLSINE 175
Query: 268 TTFEHQDHSYV----VSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHE 322
            T    D   +    V+TR YRAPE++LG   +    D+WS+GCIL E+  G+ +F    
Sbjct: 176 NTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSS 235
Query: 323 NLEHLAMMERVLGPL--PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR----AVWK 376
            +  L   ER++G +  P +  + +    +  F +       +    R S +      WK
Sbjct: 236 TMNQL---ERIIGVIDFPSNEDVES---IQSPFAKTMIESLKEKVEIRQSNKRDIFTKWK 289
Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
            L L   I    D +  + +DLL  LL+++P +R+ A +AL+HPF +
Sbjct: 290 NLLLK--INPKADCNE-EALDLLDKLLQFNPNKRISANDALKHPFVS 333

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 145/352 (41%), Gaps = 63/352 (17%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI------EI 139
           +G   T RY  ++++G G +G V +  D      VA+K VR  N       +      E+
Sbjct: 3   LGSMATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREV 62
Query: 140 DVLQRLARHDIGGTR-----CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPID 194
            +L+RL   +          C   R   D    + +VFE +   L  +L K      P +
Sbjct: 63  ALLRRLEAFEHPNVVRLMDVCATSRT--DREIKVTLVFEHVDQDLRTYLDKAPPPGLPAE 120
Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
            +++L RQ L  + F+H   ++H DLKPENIL+ S   VK+ D+      ++  SY   L
Sbjct: 121 TIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL----ARIYSYQMAL 176
Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                                + VV T  YRAPEV+L   +  P D+WSVGCI  E+   
Sbjct: 177 ---------------------TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRR 215
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP-DGATSRDSMRA 373
           + LF  +   + L  +  ++G  P                     DWP D +  R +   
Sbjct: 216 KPLFCGNSEADQLGKIFDLIGLPPED-------------------DWPRDVSLPRGAFPP 256
Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                R P  +   V         LL  +L ++P +R+ A  AL+H +  +D
Sbjct: 257 -----RGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKD 303

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 141/344 (40%), Gaps = 60/344 (17%)
Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--------SINKYREAAMIEIDVL 142
           T RY  ++++G G +G V +  D      VA+K VR         I+  RE A++    L
Sbjct: 3   TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLR--RL 60
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +     ++     V   +  D    + +VFE +   L  +L K      P + +++L RQ
Sbjct: 61  EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQ 120
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
            L  + F+H   ++H DLKPENIL+ S   VK+ D+      S   + F           
Sbjct: 121 FLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALFP---------- 170
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
                          VV T  YRAPEV+L   +  P D+WSVGCI  E+   + LF  + 
Sbjct: 171 ---------------VVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS 215
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP-DGATSRDSMRAVWKLLRLP 381
             + L  +  ++G  P                     DWP D +  R +        R P
Sbjct: 216 EADQLGKIFDLIGLPPED-------------------DWPRDVSLPRGAFPP-----RGP 251
Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
             +   V         LL  +L ++P +R+ A  AL+H +  +D
Sbjct: 252 RPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKD 295

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 144/344 (41%), Gaps = 60/344 (17%)
Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--------SINKYREAAMIEIDVL 142
           T RY  ++++G G +G V +  D      VA+K VR         I+  RE A++    L
Sbjct: 3   TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLR--RL 60
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +     ++     V   +  D    + +VFE +   L  +L K      P + +++L RQ
Sbjct: 61  EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQ 120
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
            L  + F+H   ++H DLKPENIL+ S   VK+ D+      ++  SY   L        
Sbjct: 121 FLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL----ARIYSYQMAL-------- 168
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
                        + VV T  YRAPEV+L   +  P D+WSVGCI  E+   + LF  + 
Sbjct: 169 -------------APVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS 215
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP-DGATSRDSMRAVWKLLRLP 381
             + L  +  ++G  P                     DWP D +  R +        R P
Sbjct: 216 EADQLGKIFDLIGLPPED-------------------DWPRDVSLPRGAFPP-----RGP 251
Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
             +   V         LL  +L ++P +R+ A  AL+H +  +D
Sbjct: 252 RPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKD 295

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++         D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVKSQKLTD---DHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + + S +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDSELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLCRHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 143/344 (41%), Gaps = 60/344 (17%)
Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--------SINKYREAAMIEIDVL 142
           T RY  ++++G G +G V +  D      VA+K VR         I+  RE A++    L
Sbjct: 3   TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLR--RL 60
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +     ++     V   +  D    + +VFE +   L  +L K      P + +++L RQ
Sbjct: 61  EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQ 120
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
            L  + F+H   ++H DLKPENIL+ S   VK+ D+      ++  SY   L        
Sbjct: 121 FLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL----ARIYSYQMAL-------- 168
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
                          VV T  YRAPEV+L   +  P D+WSVGCI  E+   + LF  + 
Sbjct: 169 -------------DPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS 215
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP-DGATSRDSMRAVWKLLRLP 381
             + L  +  ++G  P                     DWP D +  R +        R P
Sbjct: 216 EADQLGKIFDLIGLPPED-------------------DWPRDVSLPRGAFPP-----RGP 251
Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
             +   V         LL  +L ++P +R+ A  AL+H +  +D
Sbjct: 252 RPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKD 295

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 156/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 25  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 79
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 80  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 135
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + + S +K+
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDSELKI 168
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 169 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 228
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 229 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 268
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 269 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 312

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 156/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 29  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 83
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 84  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 139
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + + S +K+
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDSELKI 172
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 173 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 232
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 233 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 272
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 273 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 316

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 149/344 (43%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   +D +    +A+K        I+ +   YRE  ++      +
Sbjct: 52  RYQTLSPVGSGAYGSVCSSYDVKSGLKIAVKKLSRPFQSIIHAKRTYRELRLL------K 105
Query: 145 LARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
             +H+  IG           +  N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 106 HMKHENVIGLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 162
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 163 ILRGLKYIHSADIIHRDLKPSNLA---------------------------VNEDCELKI 195
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 196 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGRTLFPGT 255
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           +++  L  + R+ G  P  ++ R                      S ++   +  L ++P
Sbjct: 256 DHINQLQQIMRLTGTPPASVISR--------------------MPSHEARNYINSLPQMP 295
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
                 V   A  L +DLL+ +L  D  +R+ A EAL HP+F++
Sbjct: 296 KRNFADVFIGANPLAVDLLEKMLVLDTDKRITASEALAHPYFSQ 339

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 155/337 (45%), Gaps = 38/337 (11%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLA 146
           N++  +++ S +GEG +G V         E+VAIK +   +K  +    + EI +L+   
Sbjct: 8   NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFK 67
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             +I     +Q  + F+  N + I+ E +   L+   R  S +    D ++    Q L +
Sbjct: 68  HENIITIFNIQRPDSFENFNEVYIIQELMQTDLH---RVISTQMLSDDHIQYFIYQTLRA 124
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V  +H   +IH DLKP N+L+ S   +KV D+  L+R   + +   + P      +++F 
Sbjct: 125 VKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFG-LARIIDESAADNSEPTGQQSGMVEF- 182
Query: 267 STTFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                       V+TR YRAPEV+L    ++   D+WS GCIL EL     +F   +   
Sbjct: 183 ------------VATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRH 230
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            L ++  ++G  PH                   L   +   +R+ ++++      P   M
Sbjct: 231 QLLLIFGIIG-TPH---------------SDNDLRCIESPRAREYIKSLPMYPAAPLEKM 274
Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
               +  G  IDLLQ +L +DPA+R+ A+EAL HP+ 
Sbjct: 275 FPRVNPKG--IDLLQRMLVFDPAKRITAKEALEHPYL 309

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 19  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 73
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 74  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 129
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 162
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 163 LDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 222
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 223 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLAQMP 262
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 263 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 306

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLAQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 19  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 73
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 74  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 129
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 162
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 163 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 222
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 223 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLAQMP 262
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 263 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 306

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLAQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 154/344 (44%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++         D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVKXQKLTD---DHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 42  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 96
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 97  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 152
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 153 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 185
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 186 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 245
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 246 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLAQMP 285
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 286 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 329

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score =  101 bits (252), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 154/344 (44%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++         D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVKXQKLTD---DHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDXELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 43  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 97
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 98  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 153
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 154 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 186
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 187 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 246
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 247 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLAQMP 286
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 287 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 330

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score =  101 bits (251), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 153/355 (43%), Gaps = 69/355 (19%)
Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA 146
           GE     Y     +G G+FG V +    E  E VAIK V    +++   +     + R+ 
Sbjct: 35  GEQREIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKRFKNREL----QIMRIV 89
Query: 147 RHDIGGTRCVQIRNWF----DYRNHICI--VFEKLGPSLYDFLRKNSY--RSFPIDLVRE 198
           +H       V ++ +F    D ++ + +  V E +  ++Y   R  +   ++ P+ L++ 
Sbjct: 90  KH----PNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKL 145
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              QLL S+A++H + + H D+KP+N+LL                           P S 
Sbjct: 146 YMYQLLRSLAYIHSIGICHRDIKPQNLLLD--------------------------PPSG 179
Query: 259 AIKLIDFGSTTF--EHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGE 315
            +KLIDFGS       + +   + +R+YRAPE+I G   +    D+WS GC++ EL  G+
Sbjct: 180 VLKLIDFGSAKILIAGEPNVSXICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQ 239
Query: 316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
            LF     ++ L  + +VLG  P    I+                      + + M   +
Sbjct: 240 PLFPGESGIDQLVEIIKVLG-TPSREQIK--------------------TMNPNYMEHKF 278
Query: 376 KLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCG 430
             +R           +  D IDL+  LL Y P+ RL A EAL HPFF  D  R G
Sbjct: 279 PQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFF--DELRTG 331

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score =  101 bits (251), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 29  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 83
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 84  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 139
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 172
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 173 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 232
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 233 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLAQMP 272
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 273 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 316

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 154/344 (44%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 19  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 73
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++         D V+ L  Q
Sbjct: 74  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVKCAKLTD---DHVQFLIYQ 129
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 162
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 163 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 222
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 223 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLAQMP 262
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 263 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 306

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 28  RYQNLSPIGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 82
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 83  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 138
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDXELKI 171
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 172 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 231
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 232 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 271
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 272 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 315

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 153/340 (45%), Gaps = 44/340 (12%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLA 146
           N++  +++ S +GEG +G V         E+VAIK +   +K  +    + EI +L+   
Sbjct: 8   NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFK 67
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             +I     +Q  + F+  N + I+ E +   L+   R  S +    D ++    Q L +
Sbjct: 68  HENIITIFNIQRPDSFENFNEVYIIQELMQTDLH---RVISTQMLSDDHIQYFIYQTLRA 124
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLI 263
           V  +H   +IH DLKP N+L+ S   +KV D+   + +  S+ D S              
Sbjct: 125 VKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNS-------------- 170
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
                T +    +  V+TR YRAPEV+L    ++   D+WS GCIL EL     +F   +
Sbjct: 171 ---EPTGQQSGMTEXVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRD 227
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
               L ++  ++G  PH                   L   +   +R+ ++++      P 
Sbjct: 228 YRHQLLLIFGIIG-TPH---------------SDNDLRCIESPRAREYIKSLPMYPAAPL 271
Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             M    +  G  IDLLQ +L +DPA+R+ A+EAL HP+ 
Sbjct: 272 EKMFPRVNPKG--IDLLQRMLVFDPAKRITAKEALEHPYL 309

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 21  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 75
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 76  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 131
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 132 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 164
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 165 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 224
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 225 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 264
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 265 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 308

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 20  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 74
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 75  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 130
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 131 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 163
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 164 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 223
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 224 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 263
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 264 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 307

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 19  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 73
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 74  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 129
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 162
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 163 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 222
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 223 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 262
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 263 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 306

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 28  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 82
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 83  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 138
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDXELKI 171
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 172 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 231
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 232 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 271
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 272 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 315

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNAMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGXVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 30  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 84
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 85  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 140
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 173
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 174 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 233
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 234 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 273
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 274 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 317

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 42  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 96
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 97  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 152
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 153 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 185
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 186 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 245
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 246 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 285
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 286 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 329

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 35  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSKPFQSIIHAKRTYRE-----LRLLKH 89
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 90  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 145
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 146 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 178
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 179 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 238
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 239 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 278
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 279 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 322

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 25  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 79
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 80  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 135
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 168
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 169 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 228
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 229 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 268
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 269 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 312

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 153/340 (45%), Gaps = 44/340 (12%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLA 146
           N++  +++ S +GEG +G V         E+VAIK +   +K  +    + EI +L+   
Sbjct: 8   NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFK 67
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             +I     +Q  + F+  N + I+ E +   L+   R  S +    D ++    Q L +
Sbjct: 68  HENIITIFNIQRPDSFENFNEVYIIQELMQTDLH---RVISTQMLSDDHIQYFIYQTLRA 124
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLI 263
           V  +H   +IH DLKP N+L+ S   +KV D+   + +  S+ D S              
Sbjct: 125 VKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNS-------------- 170
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
                T +    +  V+TR YRAPEV+L    ++   D+WS GCIL EL     +F   +
Sbjct: 171 ---EPTGQQSGMTEYVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRD 227
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
               L ++  ++G  PH                   L   +   +R+ ++++      P 
Sbjct: 228 YRHQLLLIFGIIG-TPH---------------SDNDLRCIESPRAREYIKSLPMYPAAPL 271
Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             M    +  G  IDLLQ +L +DPA+R+ A+EAL HP+ 
Sbjct: 272 EKMFPRVNPKG--IDLLQRMLVFDPAKRITAKEALEHPYL 309

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 154/344 (44%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 43  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 97
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 98  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 153
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 154 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 186
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       +    V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 187 LDFGLARHTDDEMXGXVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 246
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 247 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLAQMP 286
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 287 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 330

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 25  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 79
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 80  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 135
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 168
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 169 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 228
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 229 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 268
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 269 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 312

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 43  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 97
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 98  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 153
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 154 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 186
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 187 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 246
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 247 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 286
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 287 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 330

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 34  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 88
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 89  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 144
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 145 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDXELKI 177
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 178 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 237
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 238 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 277
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 278 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 321

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 35  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 89
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 90  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 145
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 146 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 178
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 179 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 238
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 239 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 278
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 279 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 322

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 35  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 89
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 90  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 145
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 146 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 178
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 179 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 238
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 239 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 278
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 279 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 322

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 25  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 79
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 80  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 135
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 168
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 169 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 228
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 229 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 268
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 269 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 312

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 30  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 84
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 85  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 140
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 173
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 174 LDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 233
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 234 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 273
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 274 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 317

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 34  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 88
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 89  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 144
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 145 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 177
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 178 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 237
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 238 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 277
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 278 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 321

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 28  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 82
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 83  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 138
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 171
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 172 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 231
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 232 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 271
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 272 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 315

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 29  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 83
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 84  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 139
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 172
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 173 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 232
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 233 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 272
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 273 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 316

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 29  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 83
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 84  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 139
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 172
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 173 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 232
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 233 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 272
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 273 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 316

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 28  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 82
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 83  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 138
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 171
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 172 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 231
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 232 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 271
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 272 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 315

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 22  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 76
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 77  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 132
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 133 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 165
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 166 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 225
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 226 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 265
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 266 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 309

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 20  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 74
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 75  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 130
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 131 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 163
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 164 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 223
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 224 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 263
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 264 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 307

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 30  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 84
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 85  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 140
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 173
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 174 LDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 233
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 234 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 273
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 274 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 317

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 30  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 84
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 85  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 140
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 173
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 174 LDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 233
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 234 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 273
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 274 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 317

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ L+ +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 33  RYQNLAPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 87
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 88  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 143
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 144 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 176
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 177 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 236
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 237 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLAQMP 276
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 277 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 320

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 46  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 100
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 101 MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 156
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 157 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 189
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 190 LDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 249
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 250 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 289
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 290 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 333

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 154/337 (45%), Gaps = 50/337 (14%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR---EAAMIEIDVLQRLARHD 149
           RYR ++K+GEGT+G+V +  D    E VAIK +R  ++       A+ E+ +L+ L   +
Sbjct: 35  RYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRN 94
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     +++++   + + + ++FE     L  ++ KN   S  + +++    QL+  V F
Sbjct: 95  I-----IELKSVIHHNHRLHLIFEYAENDLKKYMDKNPDVS--MRVIKSFLYQLINGVNF 147
Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H  R +H DLKP+N+LL  ++  + P  K        G +   L ++  I +  F    
Sbjct: 148 CHSRRCLHRDLKPQNLLLSVSDASETPVLKI-------GDF--GLARAFGIPIRQF---- 194
Query: 270 FEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                 ++ + T  YR PE++LG   ++   D+WS+ CI  E+     LF     ++ L 
Sbjct: 195 ------THEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLF 248
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            +  VLG LP                      WP G T+    +  +   R   L     
Sbjct: 249 KIFEVLG-LPDDTT------------------WP-GVTALPDWKQSFPKFRGKTLKRVLG 288
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                + +DLL  +L  DP +R+ A+ AL HP+F+ +
Sbjct: 289 ALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHN 325

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 156/373 (41%), Gaps = 71/373 (19%)
Query: 63  GAIPRTGSPPWRPDDKDGHY---VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKEL 119
           G +PR      R   K G Y   V      L   Y   + +G G +G V    D    E 
Sbjct: 13  GLVPRGSMSLIR---KKGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEK 69
Query: 120 VAIK-IVRSINK--YREAAMIEIDVLQRLARHDIGG-----TRCVQIRNWFDYRNHICIV 171
           VAIK + R      + + A  E+ +L+ +   ++ G     T    +RN++D        
Sbjct: 70  VAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD-------- 121
Query: 172 FEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE 231
           F  + P +   L+K     F  + ++ L  Q+L+ + ++H   ++H DLKP N+      
Sbjct: 122 FYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNL------ 175
Query: 232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVIL 291
                                 + +   +K++DFG       + +  V TR YRAPEVIL
Sbjct: 176 ---------------------AVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVIL 214
Query: 292 G-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAE 350
             + +N   D+WSVGCI+ E+ +G+ LF+  + L+ L  + +V G      V + + +A 
Sbjct: 215 SWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAA 274
Query: 351 KYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL-IMQHVDHSAGDLIDLLQGLLRYDPAE 409
           K +                    +  L + P     Q    ++    DLL+ +L  D  +
Sbjct: 275 KSY--------------------IQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDK 314
Query: 410 RLKAREALRHPFF 422
           RL A +AL HPFF
Sbjct: 315 RLTAAQALTHPFF 327

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 154/344 (44%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 46  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 100
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 101 MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 156
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 157 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 189
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +DFG       +    V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 190 LDFGLARHTDDEMXGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 249
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 250 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 289
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 290 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 333

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 158/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+ +     +K+ D+ +L+R + D               
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDF-YLARHTDD--------------- 177
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
                      + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 178 -----------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 155/344 (45%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +D+G       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDYGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 Length = 329

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 157/345 (45%), Gaps = 65/345 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           Y+++ K+G G + +V E  +    E V +KI++ + K +     EI +L+ L     GG 
Sbjct: 39  YQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKNKIKR--EIKILENLR----GGP 92
Query: 154 RCVQIRNWFD--YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             + + +           +VFE +  +  DF  K  Y++     +R    ++L+++ + H
Sbjct: 93  NIITLADIVKDPVSRTPALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCH 148
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            + ++H D+KP N++ +  E+ K                         ++LID+G   F 
Sbjct: 149 SMGIMHRDVKPHNVM-IDHEHRK-------------------------LRLIDWGLAEFY 182
Query: 272 H--QDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHL 327
           H  Q+++  V++R+++ PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L
Sbjct: 183 HPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQL 242
Query: 328 AMMERVLGPLPHH-----MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
             + +VLG    +       I  D R      R +R  W     S +             
Sbjct: 243 VRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSEN------------- 289
Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR 427
              QH+   + + +D L  LLRYD   RL AREA+ HP+F   V+
Sbjct: 290 ---QHL--VSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK 329

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 145/335 (43%), Gaps = 65/335 (19%)
Query: 98  SKMGEGTFGQVVECFDNEKKELVAIK-IVRSINK--YREAAMIEIDVLQRLARHDIGG-- 152
           + +G G +G V    D    E VAIK + R      + + A  E+ +L+ +   ++ G  
Sbjct: 30  THVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLL 89
Query: 153 ---TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
              T    +RN++D        F  + P +   L+K     F  + ++ L  Q+L+ + +
Sbjct: 90  DVFTPASSLRNFYD--------FYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKY 141
Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H   ++H DLKP N+                            + +   +K++DFG   
Sbjct: 142 IHSAGVVHRDLKPGNL---------------------------AVNEDCELKILDFGLAR 174
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
               + +  V TR YRAPEVIL  + +N   D+WSVGCI+ E+ +G+ LF+  + L+ L 
Sbjct: 175 HADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLT 234
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL-IMQH 387
            + +V G      V + + +A K +                    +  L + P     Q 
Sbjct: 235 QILKVTGVPGTEFVQKLNDKAAKSY--------------------IQSLPQTPRKDFTQL 274
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              ++    DLL+ +L  D  +RL A +AL HPFF
Sbjct: 275 FPRASPQAADLLEKMLELDVDKRLTAAQALTHPFF 309

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 159/350 (45%), Gaps = 75/350 (21%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           R+++    G+GTFG V    +      VAIK V    ++R     E+ ++Q LA   +  
Sbjct: 24  RFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNR---ELQIMQDLAV--LHH 78
Query: 153 TRCVQIRNWF------DYRN-HICIVFEKLGPSLYDFLRKNSYR---SFPIDLVRELGRQ 202
              VQ++++F      D R+ ++ +V E +  +L+   R N YR   + P  L++    Q
Sbjct: 79  PNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCR-NYYRRQVAPPPILIKVFLFQ 137
Query: 203 LLESVAFMH--ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           L+ S+  +H   + + H D+KP N+L+  A                DG+          +
Sbjct: 138 LIRSIGCLHLPSVNVCHRDIKPHNVLVNEA----------------DGT----------L 171
Query: 261 KLIDFGST---TFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEA 316
           KL DFGS    +    + +Y+ S R+YRAPE+I G   +    D+WSVGCI  E+  GE 
Sbjct: 172 KLCDFGSAKKLSPSEPNVAYICS-RYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEP 230
Query: 317 LFQTHENLEHLAMMERVLGPLPHHMVIR----ADRRAEKYFRRGARLDWPDGATSRDSMR 372
           +F+   +   L  + RVLG  P   V+R    +    + Y  +G  + W           
Sbjct: 231 IFRGDNSAGQLHEIVRVLG-CPSREVLRKLNPSHTDVDLYNSKG--IPW----------- 276
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                    N+   H    A +  DLL  LL+Y P ER+K  EAL HP+F
Sbjct: 277 --------SNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYF 318

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           + FG       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LGFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 72/345 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDN--EKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI 150
           +Y  L K+GEGT+G V +  +N  E   L  I++ +         + EI +L+ L   +I
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFL-------RKNSYRSFPIDLVRELGRQL 203
                V++ +    +  + +VFE L   L   L          + +SF +        QL
Sbjct: 63  -----VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLL--------QL 109
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L  +A+ H+ R++H DLKP+N+L+     +K+ D+  L+R+                   
Sbjct: 110 LNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFG-LARA------------------- 149
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHE 322
            FG      + +++ V T  YRAP+V++G   ++   D+WSVGCI  E+ +G  LF    
Sbjct: 150 -FGIPV---RKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS 205
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGAT--SRDSMRAVWKLLRL 380
             + L  + R+LG  P+                    +WP+       D    V++ L  
Sbjct: 206 EADQLMRIFRILGT-PNSK------------------NWPNVTELPKYDPNFTVYEPLPW 246
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
            +  ++ +D S    IDLL  +L+ DP +R+ A++AL H +F  +
Sbjct: 247 ESF-LKGLDESG---IDLLSKMLKLDPNQRITAKQALEHAYFKEN 287

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +D G       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDAGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 156/345 (45%), Gaps = 72/345 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDN--EKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI 150
           +Y  L K+GEGT+G V +  +N  E   L  I++ +         + EI +L+ L   +I
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFL-------RKNSYRSFPIDLVRELGRQL 203
                V++ +    +  + +VFE L   L   L          + +SF +        QL
Sbjct: 63  -----VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLL--------QL 109
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L  +A+ H+ R++H DLKP+N+L+     +K+ D+  L+R+                   
Sbjct: 110 LNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFG-LARA------------------- 149
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHE 322
            FG      + +++ V T  YRAP+V++G   ++   D+WSVGCI  E+ +G  LF    
Sbjct: 150 -FGIPV---RKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGAPLFPGVS 205
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGAT--SRDSMRAVWKLLRL 380
             + L  + R+LG  P+                    +WP+       D    V++ L  
Sbjct: 206 EADQLMRIFRILGT-PNSK------------------NWPNVTELPKYDPNFTVYEPLPW 246
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
            +  ++ +D S    IDLL  +L+ DP +R+ A++AL H +F  +
Sbjct: 247 ESF-LKGLDESG---IDLLSKMLKLDPNQRITAKQALEHAYFKEN 287

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +D G       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDGGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 156/345 (45%), Gaps = 72/345 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDN--EKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI 150
           +Y  L K+GEGT+G V +  +N  E   L  I++ +         + EI +L+ L   +I
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFL-------RKNSYRSFPIDLVRELGRQL 203
                V++ +    +  + +VFE L   L   L          + +SF +        QL
Sbjct: 63  -----VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLL--------QL 109
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L  +A+ H+ R++H DLKP+N+L+     +K+ D+  L+R+                   
Sbjct: 110 LNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFG-LARA------------------- 149
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHE 322
            FG      + +++ + T  YRAP+V++G   ++   D+WSVGCI  E+ +G  LF    
Sbjct: 150 -FGIPV---RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS 205
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGAT--SRDSMRAVWKLLRL 380
             + L  + R+LG  P+                    +WP+       D    V++ L  
Sbjct: 206 EADQLMRIFRILGT-PNSK------------------NWPNVTELPKYDPNFTVYEPLPW 246
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
            +  ++ +D S    IDLL  +L+ DP +R+ A++AL H +F  +
Sbjct: 247 ESF-LKGLDESG---IDLLSKMLKLDPNQRITAKQALEHAYFKEN 287

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 68/344 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           RY+ LS +G G +G V   FD +    VA+K        I+ +   YRE     + +L+ 
Sbjct: 23  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LRLLKH 77
Query: 145 LARHDIGGTRCV--QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           +   ++ G   V    R+  ++ N + +V   +G  L + ++    +    D V+ L  Q
Sbjct: 78  MKHENVIGLLDVFTPARSLEEF-NDVYLVTHLMGADLNNIVK---CQKLTDDHVQFLIYQ 133
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  + ++H   +IH DLKP N+                            + +   +K+
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNL---------------------------AVNEDCELKI 166
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTH 321
           +D G       + +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL +G  LF   
Sbjct: 167 LDRGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT 226
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           ++++ L ++ R++G                    GA L      +S  +   +  L ++P
Sbjct: 227 DHIDQLKLILRLVG------------------TPGAEL--LKKISSESARNYIQSLTQMP 266
Query: 382 NLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
            +   +V   A  L +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 267 KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 310

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 155/345 (44%), Gaps = 67/345 (19%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQR 144
           + L  +Y+ L K+GEGT+G V +  D++ + +VA+K +R           A+ EI +L+ 
Sbjct: 17  QGLMEKYQKLEKVGEGTYGVVYKAKDSQGR-IVALKRIRLDAEDEGIPSTAIREISLLKE 75
Query: 145 LARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
           L   +I     V + +       + +VFE +   L   L +N         ++    QLL
Sbjct: 76  LHHPNI-----VSLIDVIHSERCLTLVFEFMEKDLKKVLDENK-TGLQDSQIKIYLYQLL 129
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             VA  H+ R++H DLKP+N+L+ S                 DG          A+KL D
Sbjct: 130 RGVAHCHQHRILHRDLKPQNLLINS-----------------DG----------ALKLAD 162
Query: 265 FG---STTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQT 320
           FG   +     + +++ V T  YRAP+V++G   ++   D+WS+GCI  E+ +G+ LF  
Sbjct: 163 FGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPG 222
Query: 321 HENLEHLAMMERVLG-PLPHH--MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
             + + L  +  +LG P P     V       ++ F+   +  W                
Sbjct: 223 VTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSS-------------- 268
Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +P    +         IDLL  +L +DP +R+ AR+A+ HP+F
Sbjct: 269 -IIPGFCQEG--------IDLLSNMLCFDPNKRISARDAMNHPYF 304

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 151/348 (43%), Gaps = 76/348 (21%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           R + L  +G G +G V   +D   ++ VA+K        ++ +   YRE     + +L+ 
Sbjct: 29  RLQGLRPVGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTYRE-----LRLLKH 83
Query: 145 LARHDIGG-----TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
           L   ++ G     T    I ++    + + +V   +G  L + ++  +      + V+ L
Sbjct: 84  LKHENVIGLLDVFTPATSIEDF----SEVYLVTTLMGADLNNIVKSQALSD---EHVQFL 136
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             QLL  + ++H   +IH DLKP N+                            + + S 
Sbjct: 137 VYQLLRGLKYIHSAGIIHRDLKPSNV---------------------------AVNEDSE 169
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF 318
           ++++DFG      ++ +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL  G+ALF
Sbjct: 170 LRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKALF 229
Query: 319 QTHENLEHLA-MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
              + ++ L  +ME V  P P  +   +   A  Y +                      L
Sbjct: 230 PGSDYIDQLKRIMEVVGTPSPEVLAKISSEHARTYIQ---------------------SL 268
Query: 378 LRLPNLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
             +P   +  +   A  L IDLL  +L  D  +R+ A EAL H +F++
Sbjct: 269 PPMPQKDLSSIFRGANPLAIDLLGRMLVLDSDQRVSAAEALAHAYFSQ 316

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 155/345 (44%), Gaps = 67/345 (19%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQR 144
           + L  +Y+ L K+GEGT+G V +  D++ + +VA+K +R           A+ EI +L+ 
Sbjct: 17  QGLMEKYQKLEKVGEGTYGVVYKAKDSQGR-IVALKRIRLDAEDEGIPSTAIREISLLKE 75
Query: 145 LARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
           L   +I     V + +       + +VFE +   L   L +N         ++    QLL
Sbjct: 76  LHHPNI-----VSLIDVIHSERCLTLVFEFMEKDLKKVLDENK-TGLQDSQIKIYLYQLL 129
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             VA  H+ R++H DLKP+N+L+ S                 DG          A+KL D
Sbjct: 130 RGVAHCHQHRILHRDLKPQNLLINS-----------------DG----------ALKLAD 162
Query: 265 FG---STTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQT 320
           FG   +     + +++ V T  YRAP+V++G   ++   D+WS+GCI  E+ +G+ LF  
Sbjct: 163 FGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPG 222
Query: 321 HENLEHLAMMERVLG-PLPHH--MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
             + + L  +  +LG P P     V       ++ F+   +  W                
Sbjct: 223 VTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSS-------------- 268
Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +P    +         IDLL  +L +DP +R+ AR+A+ HP+F
Sbjct: 269 -IIPGFCQEG--------IDLLSNMLCFDPNKRISARDAMNHPYF 304

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 144/336 (42%), Gaps = 58/336 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINK--YREAAMIEIDVLQRLARHD- 149
           YR L  +G G +G V    D      VAIK + R      + + A  E+ +L+ + RH+ 
Sbjct: 27  YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM-RHEN 85
Query: 150 -IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
            IG           D      +V   +G  L   ++   +     D ++ L  Q+L+ + 
Sbjct: 86  VIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMK---HEKLGEDRIQFLVYQMLKGLR 142
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H   +IH DLKP N+                            + +   +K++DFG  
Sbjct: 143 YIHAAGIIHRDLKPGNL---------------------------AVNEDCELKILDFGLA 175
Query: 269 TFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                +    V TR YRAPEVIL  + +    D+WSVGCI+ E+ +G+ LF+  ++L+ L
Sbjct: 176 RQADSEMXGXVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQL 235
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRG-ARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
             + +V G  P   V R      K + +G   L+  D A+                 I+ 
Sbjct: 236 KEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFAS-----------------ILT 278
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           +    A   ++LL+ +L  D  +R+ A EAL HP+F
Sbjct: 279 NASPLA---VNLLEKMLVLDAEQRVTAGEALAHPYF 311

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 152/348 (43%), Gaps = 76/348 (21%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           R + L  +G G +G V   +D   ++ VA+K        ++ +   YRE     + +L+ 
Sbjct: 29  RLQGLRPVGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTYRE-----LRLLKH 83
Query: 145 LARHDIGG-----TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
           L   ++ G     T    I ++    + + +V   +G  L + ++    ++   + V+ L
Sbjct: 84  LKHENVIGLLDVFTPATSIEDF----SEVYLVTTLMGADLNNIVK---CQALSDEHVQFL 136
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             QLL  + ++H   +IH DLKP N+                            + + S 
Sbjct: 137 VYQLLRGLKYIHSAGIIHRDLKPSNV---------------------------AVNEDSE 169
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF 318
           ++++DFG      ++ +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL  G+ALF
Sbjct: 170 LRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKALF 229
Query: 319 QTHENLEHLA-MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
              + ++ L  +ME V  P P  +   +   A  Y +                      L
Sbjct: 230 PGSDYIDQLKRIMEVVGTPSPEVLAKISSEHARTYIQ---------------------SL 268
Query: 378 LRLPNLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
             +P   +  +   A  L IDLL  +L  D  +R+ A EAL H +F++
Sbjct: 269 PPMPQKDLSSIFRGANPLAIDLLGRMLVLDSDQRVSAAEALAHAYFSQ 316

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 154/348 (44%), Gaps = 75/348 (21%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHD 149
           +Y  L  +GEG++G V++C + +   +VAIK     +     ++ AM EI +L++L   +
Sbjct: 26  KYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHEN 85
Query: 150 IGG--TRCVQIRNW---FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
           +      C + + W   F++ +H  +   +L P+  D+            +V++   Q++
Sbjct: 86  LVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDY-----------QVVQKYLFQII 134
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + F H   +IH D+KPENIL+  +  VK+ D+ F    +  G  + +           
Sbjct: 135 NGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDD----------- 183
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
                         V+TR YRAPE+++G + +    D+W++GC++ E+  GE LF    +
Sbjct: 184 -------------EVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSD 230
Query: 324 LEHLAMMERVLGPL-PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
           ++ L  +   LG L P H         ++ F +                  V+  +RLP 
Sbjct: 231 IDQLYHIMMCLGNLIPRH---------QELFNKN----------------PVFAGVRLPE 265
Query: 383 L-----IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
           +     + +     +  +IDL +  L  DP +R    E L H FF  D
Sbjct: 266 IKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMD 313

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 158/369 (42%), Gaps = 52/369 (14%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAI-KIVRSINKYREAAMI--EIDVLQRLARHD 149
           RY I   +G G++G V E +D  +K +VAI KI+R      +   I  EI +L RL    
Sbjct: 54  RYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDH 113
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDL-VRELGRQLLESVA 208
           +     + I    +  + + +V E          R   Y +   +L ++ L   LL  V 
Sbjct: 114 VVKVLDIVIPKDVEKFDELYVVLEIADSDFKKLFRTPVYLT---ELHIKTLLYNLLVGVK 170
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++H   ++H DLKP N L+     VKV D+   + +       S     P+   + L+ F
Sbjct: 171 YVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTF 230
Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTHEN 323
             T    +  +  V TR YRAPE+IL L  NY    D+WS+GCI  EL     L    EN
Sbjct: 231 PHTKNLKRQLTGHVVTRWYRAPELIL-LQENYTEAIDVWSIGCIFAEL-----LNMIKEN 284
Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           + + A     L P      +  D++A   F+   R        +RD +  ++ +L  P+ 
Sbjct: 285 VAYHA-DRGPLFPGSSCFPLSPDQKAGNDFKFHTR-------GNRDQLNVIFNILGTPSE 336
Query: 384 -------------------------IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
                                    + +    S+ D I LL+ +L ++P +R+   E L 
Sbjct: 337 EDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRITINECLA 396
Query: 419 HPFFTRDVR 427
           HPFF ++VR
Sbjct: 397 HPFF-KEVR 404

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 151/348 (43%), Gaps = 76/348 (21%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK--------IVRSINKYREAAMIEIDVLQR 144
           R + L  +G G +G V   +D   ++ VA+K        ++ +   YRE     + +L+ 
Sbjct: 21  RLQGLRPVGSGAYGSVCSAYDARLRQKVAVKKLSRPFQSLIHARRTYRE-----LRLLKH 75
Query: 145 LARHDIGG-----TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
           L   ++ G     T    I ++    + + +V   +G  L + ++    ++   + V+ L
Sbjct: 76  LKHENVIGLLDVFTPATSIEDF----SEVYLVTTLMGADLNNIVK---CQALSDEHVQFL 128
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             QLL  + ++H   +IH DLKP N+                            + +   
Sbjct: 129 VYQLLRGLKYIHSAGIIHRDLKPSNV---------------------------AVNEDCE 161
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF 318
           ++++DFG      ++ +  V+TR YRAPE++L  + +N   D+WSVGCI+ EL  G+ALF
Sbjct: 162 LRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKALF 221
Query: 319 QTHENLEHLA-MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
              + ++ L  +ME V  P P  +   +   A  Y +                      L
Sbjct: 222 PGSDYIDQLKRIMEVVGTPSPEVLAKISSEHARTYIQ---------------------SL 260
Query: 378 LRLPNLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFTR 424
             +P   +  +   A  L IDLL  +L  D  +R+ A EAL H +F++
Sbjct: 261 PPMPQKDLSSIFRGANPLAIDLLGRMLVLDSDQRVSAAEALAHAYFSQ 308

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 146/339 (43%), Gaps = 62/339 (18%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHD 149
           +Y  L K+GEGT+G V +  + E  E+VA+K VR  +       +A+ EI +L+ L   +
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 62
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     V++ +       + +VFE     L  +    +    P ++V+    QLL+ + F
Sbjct: 63  I-----VRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDP-EIVKSFLFQLLKGLGF 116
Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG--- 266
            H   ++H DLKP+N+L+                            ++  +KL +FG   
Sbjct: 117 CHSRNVLHRDLKPQNLLI---------------------------NRNGELKLANFGLAR 149
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENL 324
           +     + +S  V T  YR P+V+ G   ++   D+WS GCI  EL  +G  LF  ++  
Sbjct: 150 AFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD 209
Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           + L  + R+LG                         WP      D     + +      +
Sbjct: 210 DQLKRIFRLLG-------------------TPTEEQWPSMTKLPD--YKPYPMYPATTSL 248
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
           +  V        DLLQ LL+ +P +R+ A EAL+HP+F+
Sbjct: 249 VNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFS 287

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 142/335 (42%), Gaps = 68/335 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 107 IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 158
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 159 YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 218
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST--- 268
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 219 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 252
Query: 269 TFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                + SY+ S R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L
Sbjct: 253 VRGEPNVSYICS-RYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQL 311
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
             + +VLG  P    IR        F+       P            W  +  P      
Sbjct: 312 VEIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------ 352
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              +  + I L   LL Y P  RL   EA  H FF
Sbjct: 353 --RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 385

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 142/335 (42%), Gaps = 68/335 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 66  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 117
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 118 YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 177
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST--- 268
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 178 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 211
Query: 269 TFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                + SY+ S R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L
Sbjct: 212 VRGEPNVSYICS-RYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQL 270
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
             + +VLG  P    IR        F+       P            W  +  P      
Sbjct: 271 VEIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------ 311
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              +  + I L   LL Y P  RL   EA  H FF
Sbjct: 312 --RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 344

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 142/335 (42%), Gaps = 68/335 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 56  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 107
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 108 YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 167
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST--- 268
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 168 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 201
Query: 269 TFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                + SY+ S R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L
Sbjct: 202 VRGEPNVSYICS-RYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQL 260
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
             + +VLG  P    IR        F+       P            W  +  P      
Sbjct: 261 VEIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------ 301
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              +  + I L   LL Y P  RL   EA  H FF
Sbjct: 302 --RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 334

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 145/339 (42%), Gaps = 62/339 (18%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHD 149
           +Y  L K+GEGT+G V +  + E  E+VA+K VR  +       +A+ EI +L+ L   +
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 62
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     V++ +       + +VFE     L  +    +    P ++V+    QLL+ + F
Sbjct: 63  I-----VRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDP-EIVKSFLFQLLKGLGF 116
Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG--- 266
            H   ++H DLKP+N+L+                            ++  +KL DFG   
Sbjct: 117 CHSRNVLHRDLKPQNLLI---------------------------NRNGELKLADFGLAR 149
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENL 324
           +     + +S  V T  YR P+V+ G   ++   D+WS GCI  EL  +   LF  ++  
Sbjct: 150 AFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAARPLFPGNDVD 209
Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           + L  + R+LG                         WP      D     + +      +
Sbjct: 210 DQLKRIFRLLG-------------------TPTEEQWPSMTKLPD--YKPYPMYPATTSL 248
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
           +  V        DLLQ LL+ +P +R+ A EAL+HP+F+
Sbjct: 249 VNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFS 287

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 142/335 (42%), Gaps = 68/335 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 64  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 115
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 116 YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 175
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST--- 268
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 176 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 209
Query: 269 TFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                + SY+ S R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L
Sbjct: 210 VRGEPNVSYICS-RYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQL 268
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
             + +VLG  P    IR        F+       P            W  +  P      
Sbjct: 269 VEIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------ 309
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              +  + I L   LL Y P  RL   EA  H FF
Sbjct: 310 --RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 342

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 142/335 (42%), Gaps = 68/335 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 113
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 114 YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 173
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST--- 268
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 174 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 207
Query: 269 TFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                + SY+ S R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L
Sbjct: 208 VRGEPNVSYICS-RYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQL 266
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
             + +VLG  P    IR        F+       P            W  +  P      
Sbjct: 267 VEIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------ 307
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              +  + I L   LL Y P  RL   EA  H FF
Sbjct: 308 --RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 340

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 113
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 114 YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 173
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 174 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 207
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 208 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 267
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 268 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 307
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 308 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 340

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 155/360 (43%), Gaps = 60/360 (16%)
Query: 79  DGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREA 134
           +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R       A
Sbjct: 8   NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHA 67
Query: 135 --AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRS 190
             A  E+ VL ++  H   IG       +   +    + IV E +  +L   ++      
Sbjct: 68  KRAYREL-VLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ----ME 122
Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
              + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ 
Sbjct: 123 LDHERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFG-LARTA--GTS 179
Query: 251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
           F   P                     YVV TR+YRAPEVILG+G+    D+WSVGCI+ E
Sbjct: 180 FMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGE 217
Query: 311 LCSGEALFQTHENLEHL-AMMERVLGPLPHHM-----VIRA-DRRAEKYFRRGARLDWPD 363
           +  G  LF   ++++    ++E++  P P  M      +R       KY        +PD
Sbjct: 218 MIKGGVLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPD 277
Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                DS               +H    A    DLL  +L  D ++R+   EAL+HP+  
Sbjct: 278 VLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYIN 322

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 146/332 (43%), Gaps = 53/332 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE--AAMIEIDVLQRLARHDIG 151
           Y  L K+GEGT+  V +        LVA+K +R  ++      A+ E+ +L+ L   +I 
Sbjct: 4   YIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANI- 62
Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               V + +       + +VFE L   L  +L  +      +  V+    QLL  +A+ H
Sbjct: 63  ----VTLHDIIHTEKSLTLVFEYLDKDLKQYL-DDCGNIINMHNVKLFLFQLLRGLAYCH 117
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
             +++H DLKP+N+L+     +K+ D+  L+R+       K++P           + T++
Sbjct: 118 RQKVLHRDLKPQNLLINERGELKLADFG-LARA-------KSIP-----------TKTYD 158
Query: 272 HQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           ++     V T  YR P+++LG   ++   D+W VGCI  E+ +G  LF      E L  +
Sbjct: 159 NE-----VVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFI 213
Query: 331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH 390
            R+LG                         WP G  S +  +           ++ H   
Sbjct: 214 FRILGTPTEET-------------------WP-GILSNEEFKTYNYPKYRAEALLSHAPR 253
Query: 391 SAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              D  DLL  LL+++   R+ A +A++HPFF
Sbjct: 254 LDSDGADLLTKLLQFEGRNRISAEDAMKHPFF 285

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 40  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 91
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 92  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 151
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 152 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 185
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 186 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 245
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 246 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 285
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 286 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 318

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 142/335 (42%), Gaps = 68/335 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 33  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 84
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 85  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 144
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST--- 268
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 145 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 178
Query: 269 TFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                + SY+ S R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L
Sbjct: 179 VRGEPNVSYICS-RYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQL 237
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
             + +VLG  P    IR        F+       P            W  +  P      
Sbjct: 238 VEIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------ 278
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              +  + I L   LL Y P  RL   EA  H FF
Sbjct: 279 --RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 311

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 47  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 98
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 99  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 159 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 192
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 193 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 252
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 253 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 292
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 293 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 325

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 40  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 91
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 92  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 151
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 152 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 185
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 186 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 245
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 246 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 285
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 286 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 318

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 36  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 87
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 88  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 147
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 148 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 181
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 182 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 241
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 242 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 281
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 282 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 314

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 79
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 80  YFFYSSGEKKDVVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 139
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 140 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 173
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 174 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 233
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 234 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 273
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 274 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 306

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 29  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 80
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 81  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 140
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 141 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 174
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 175 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 234
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 235 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 274
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 275 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 307

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 155/360 (43%), Gaps = 60/360 (16%)
Query: 79  DGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREA 134
           +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R       A
Sbjct: 8   NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHA 67
Query: 135 --AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRS 190
             A  E+ VL ++  H   IG       +   +    + IV E +  +L   ++      
Sbjct: 68  KRAYREL-VLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ----ME 122
Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
              + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ 
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFG-LARTA--GTS 179
Query: 251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
           F   P                     YVV TR+YRAPEVILG+G+    D+WSVGCI+ E
Sbjct: 180 FMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGE 217
Query: 311 LCSGEALFQTHENLEHL-AMMERVLGPLPHHM-----VIRA-DRRAEKYFRRGARLDWPD 363
           +  G  LF   ++++    ++E++  P P  M      +R       KY        +PD
Sbjct: 218 MIKGGVLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPD 277
Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                DS               +H    A    DLL  +L  D ++R+   EAL+HP+  
Sbjct: 278 VLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYIN 322

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 32  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 83
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 84  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 143
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 144 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 177
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 178 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 237
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 238 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 277
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 278 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 310

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 79
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 80  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 139
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 140 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 173
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 174 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 233
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 234 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 273
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 274 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 306

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 41  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 92
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 93  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 152
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 153 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 186
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 187 VRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 246
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 247 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 286
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 287 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 319

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V     ++     E+ ++++L   +I     V++R
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR---ELQIMRKLDHCNI-----VRLR 79
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 80  YFFYSSGEKKDEVYLNLVLDYVPATVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 139
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 140 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 173
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 174 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 233
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG      +            R    ++ + A  +       K+ R         
Sbjct: 234 EIIKVLGTPTREQI------------REMNPNYTEFAFPQIKAHPWTKVFR--------- 272
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 273 PRTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 306

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 79
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 80  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 139
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 140 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 173
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 174 VRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 233
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 234 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 273
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 274 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 306

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V    +++     E+ ++++L   +I     V++R
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKLDHCNI-----VRLR 79
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 80  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 139
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 140 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 173
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 174 VRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 233
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 234 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 273
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 274 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 306

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V     ++     E+ ++++L   +I     V++R
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR---ELQIMRKLDHCNI-----VRLR 79
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 80  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 139
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 140 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 173
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 174 VRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 233
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG      +            R    ++ + A  +       K+ R         
Sbjct: 234 EIIKVLGTPTREQI------------REMNPNYTEFAFPQIKAHPWTKVFR--------- 272
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 273 PRTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 306

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 154/365 (42%), Gaps = 70/365 (19%)
Query: 79  DGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--------S 127
           +  Y   IG++   +  RY+ L  +G G  G VV  +D   +  VAIK +         +
Sbjct: 8   NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVVAAYDAILERNVAIKKLSRPFQNQTHA 67
Query: 128 INKYREAAMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
              YRE       VL ++  H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 68  KRAYREL------VLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ- 120
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 121 ---MELDHERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFG-LARTA 176
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P                     YVV TR+YRAPEVILG+G+    D+WSVG
Sbjct: 177 --GTSFMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDIWSVG 212
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM-----VIRA-DRRAEKYFRRGAR 358
            I+ E+  G  LF   ++++    ++E++  P P  M      +R       KY      
Sbjct: 213 VIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYSFE 272
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 273 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 317
Query: 419 HPFFT 423
           HP+  
Sbjct: 318 HPYIN 322

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 140/334 (41%), Gaps = 66/334 (19%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G+FG V +    +  ELVAIK V     ++     E+ ++++L   +I     V++R
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR---ELQIMRKLDHCNI-----VRLR 79
Query: 160 NWFDYRN------HICIVFEKLGPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMH 211
            +F          ++ +V + +  ++Y   R  S   ++ P+  V+    QL  S+A++H
Sbjct: 80  YFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH 139
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT-- 269
              + H D+KP+N+LL                           P ++ +KL DFGS    
Sbjct: 140 SFGICHRDIKPQNLLLD--------------------------PDTAVLKLCDFGSAKQL 173
Query: 270 FEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              + +   + +R+YRAPE+I G   +    D+WS GC+L EL  G+ +F     ++ L 
Sbjct: 174 VRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 233
Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + +VLG  P    IR        F+       P            W  +  P       
Sbjct: 234 EIIKVLG-TPTREQIREMNPNYTEFKFPQIKAHP------------WTKVFRP------- 273
Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +  + I L   LL Y P  RL   EA  H FF
Sbjct: 274 -RTPPEAIALCSRLLEYTPTARLTPLEACAHSFF 306

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 154/360 (42%), Gaps = 60/360 (16%)
Query: 79  DGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREA 134
           +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R       A
Sbjct: 8   NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHA 67
Query: 135 --AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRS 190
             A  E+ VL +   H   IG       +   +    + IV E +  +L   ++      
Sbjct: 68  KRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ----ME 122
Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
              + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ 
Sbjct: 123 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFG-LARTA--GTS 179
Query: 251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
           F   P                     YVV TR+YRAPEVILG+G+    D+WSVGCI+ E
Sbjct: 180 FMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGE 217
Query: 311 LCSGEALFQTHENLEHL-AMMERVLGPLPHHM-----VIRA-DRRAEKYFRRGARLDWPD 363
           +  G  LF   ++++    ++E++  P P  M      +R       KY        +PD
Sbjct: 218 MIKGGVLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPD 277
Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                DS               +H    A    DLL  +L  D ++R+   EAL+HP+  
Sbjct: 278 VLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYIN 322

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 154/365 (42%), Gaps = 60/365 (16%)
Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 4   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 63
Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ VL +   H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 64  NQTHAKRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ- 121
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 122 ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA 177
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P                     YVV TR+YRAPEVILG+G+    D+WSVG
Sbjct: 178 --GTSFMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDIWSVG 213
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGAR 358
           CI+ E+  G  LF   ++++    ++E++  P P  M      V        KY      
Sbjct: 214 CIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFE 273
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 274 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318
Query: 419 HPFFT 423
           HP+  
Sbjct: 319 HPYIN 323

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 154/365 (42%), Gaps = 60/365 (16%)
Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 3   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 62
Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ VL +   H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 63  NQTHAKRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ- 120
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 121 ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA 176
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P                     YVV TR+YRAPEVILG+G+    D+WSVG
Sbjct: 177 --GTSFMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDIWSVG 212
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGAR 358
           CI+ E+  G  LF   ++++    ++E++  P P  M      V        KY      
Sbjct: 213 CIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFE 272
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 273 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 317
Query: 419 HPFFT 423
           HP+  
Sbjct: 318 HPYIN 322

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 153/365 (41%), Gaps = 60/365 (16%)
Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 5   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 64
Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ VL +   H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 65  NQTHAKRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ- 122
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 123 ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA 178
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F  +P                       V TR+YRAPEVILG+G+    D+WSVG
Sbjct: 179 --GTSFMMVP----------------------FVVTRYYRAPEVILGMGYKENVDIWSVG 214
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGAR 358
           CI+ E+  G  LF   ++++    ++E++  P P  M      V        KY      
Sbjct: 215 CIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFE 274
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 275 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 319
Query: 419 HPFFT 423
           HP+  
Sbjct: 320 HPYIN 324

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 91/343 (26%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKY--REAAMIEIDVLQRL 145
            + RY+    +G+G+FG+V+ C D    +  A+K++  R + +   +E+ + E+ +L++L
Sbjct: 30  FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL 89
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
              +I     +++  +F+ + +  +V E   G  L+D +     R   +D  R + RQ+L
Sbjct: 90  DHPNI-----MKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK-RFSEVDAARII-RQVL 142
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + +MH+ +++H DLKPEN+LL S               SKD +          I++ID
Sbjct: 143 SGITYMHKNKIVHRDLKPENLLLES--------------KSKDAN----------IRIID 178
Query: 265 FG-STTFE-HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           FG ST FE  +     + T +Y APEV+ G  ++  CD+WS G IL  L SG   F    
Sbjct: 179 FGLSTHFEASKKMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPF---- 233
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK---LLR 379
                                                   +GA   D ++ V K      
Sbjct: 234 ----------------------------------------NGANEYDILKKVEKGKYTFE 253
Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           LP    + V  SA DLI   + +L Y P+ R+ AR+AL H + 
Sbjct: 254 LPQ--WKKVSESAKDLI---RKMLTYVPSMRISARDALDHEWI 291

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 91/343 (26%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKY--REAAMIEIDVLQRL 145
            + RY+    +G+G+FG+V+ C D    +  A+K++  R + +   +E+ + E+ +L++L
Sbjct: 48  FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL 107
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
              +I     +++  +F+ + +  +V E   G  L+D +     R   +D  R + RQ+L
Sbjct: 108 DHPNI-----MKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK-RFSEVDAARII-RQVL 160
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + +MH+ +++H DLKPEN+LL S               SKD +          I++ID
Sbjct: 161 SGITYMHKNKIVHRDLKPENLLLES--------------KSKDAN----------IRIID 196
Query: 265 FG-STTFE-HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           FG ST FE  +     + T +Y APEV+ G  ++  CD+WS G IL  L SG   F    
Sbjct: 197 FGLSTHFEASKKMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPF---- 251
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK---LLR 379
                                                   +GA   D ++ V K      
Sbjct: 252 ----------------------------------------NGANEYDILKKVEKGKYTFE 271
Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           LP    + V  SA DLI   + +L Y P+ R+ AR+AL H + 
Sbjct: 272 LPQ--WKKVSESAKDLI---RKMLTYVPSMRISARDALDHEWI 309

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 138/318 (43%), Gaps = 77/318 (24%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA-AMIEIDVLQRLARHDIGGTRCVQI 158
           +GEG+F    +C   +  +  A+KI   I+K  EA    EI  L+    H       V++
Sbjct: 19  LGEGSFSICRKCVHKKSNQAFAVKI---ISKRMEANTQKEITALKLCEGH----PNIVKL 71
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
              F  + H  +V E L G  L++ ++K  +  F       + R+L+ +V+ MH++ ++H
Sbjct: 72  HEVFHDQLHTFLVMELLNGGELFERIKKKKH--FSETEASYIMRKLVSAVSHMHDVGVVH 129
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            DLKPEN+L                        F +   +  IK+IDFG    +  D+  
Sbjct: 130 RDLKPENLL------------------------FTDENDNLEIKIIDFGFARLKPPDNQP 165
Query: 278 VVS---TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVL 334
           + +   T HY APE++   G++  CDLWS+G IL  + SG+  FQ+H         +R L
Sbjct: 166 LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSH---------DRSL 216
Query: 335 GPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD 394
                  +++  ++ +  F   A                 WK          +V   A D
Sbjct: 217 TCTSAVEIMKKIKKGDFSFEGEA-----------------WK----------NVSQEAKD 249
Query: 395 LIDLLQGLLRYDPAERLK 412
           LI   QGLL  DP +RLK
Sbjct: 250 LI---QGLLTVDPNKRLK 264

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 91/343 (26%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKY--REAAMIEIDVLQRL 145
            + RY+    +G+G+FG+V+ C D    +  A+K++  R + +   +E+ + E+ +L++L
Sbjct: 47  FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL 106
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
              +I     +++  +F+ + +  +V E   G  L+D +     R   +D  R + RQ+L
Sbjct: 107 DHPNI-----MKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK-RFSEVDAARII-RQVL 159
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + +MH+ +++H DLKPEN+LL S               SKD +          I++ID
Sbjct: 160 SGITYMHKNKIVHRDLKPENLLLES--------------KSKDAN----------IRIID 195
Query: 265 FG-STTFE-HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           FG ST FE  +     + T +Y APEV+ G  ++  CD+WS G IL  L SG   F    
Sbjct: 196 FGLSTHFEASKKMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPF---- 250
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK---LLR 379
                                                   +GA   D ++ V K      
Sbjct: 251 ----------------------------------------NGANEYDILKKVEKGKYTFE 270
Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           LP    + V  SA DLI   + +L Y P+ R+ AR+AL H + 
Sbjct: 271 LPQ--WKKVSESAKDLI---RKMLTYVPSMRISARDALDHEWI 308

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 155/349 (44%), Gaps = 84/349 (24%)
Query: 80  GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMI 137
           G ++ +   +L+  Y+ + K+G G +G+V+ C D       AIKI+R  S++    + ++
Sbjct: 25  GMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLL 84
Query: 138 EIDVLQRLARHDIGGTRCVQIRNWF-DYRNHICIVFEKLGPSLYD-FLRKNSYRSFPIDL 195
           E   + +L  H       +++ ++F D RN+  ++    G  L+D  + +  +      +
Sbjct: 85  EEVAVLKLLDH----PNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAV 140
Query: 196 VRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLP 255
           +    +Q+L  V ++H+  ++H DLKPEN+LL S E                        
Sbjct: 141 II---KQVLSGVTYLHKHNIVHRDLKPENLLLESKE------------------------ 173
Query: 256 KSSAIKLIDFG-STTFEHQDH-SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
           K + IK++DFG S  FE+Q      + T +Y APEV L   ++  CD+WS+G IL  L +
Sbjct: 174 KDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEV-LRKKYDEKCDVWSIGVILFILLA 232
Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G   F    + E L  +E+                  KY       D P+          
Sbjct: 233 GYPPFGGQTDQEILRKVEK-----------------GKY-----TFDSPE---------- 260
Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
            WK          +V   A DLI   + +L++D   R+ A++AL HP+ 
Sbjct: 261 -WK----------NVSEGAKDLI---KQMLQFDSQRRISAQQALEHPWI 295

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 154/365 (42%), Gaps = 60/365 (16%)
Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 3   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 62
Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ VL +   H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 63  NQTHAKRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ- 120
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 121 ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA 176
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P                     YVV TR+YRAPEVILG+G+    D+WSVG
Sbjct: 177 --GTSFMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDIWSVG 212
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGAR 358
           CI+ E+  G  LF   ++++    ++E++  P P  M      V        KY      
Sbjct: 213 CIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYSFE 272
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 273 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 317
Query: 419 HPFFT 423
           HP+  
Sbjct: 318 HPYIN 322

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 155/365 (42%), Gaps = 60/365 (16%)
Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 3   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 62
Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ VL +   H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 63  NQTHAKRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ- 120
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 121 ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA 176
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P                     YVV TR+YRAPEVILG+G+    D+WSVG
Sbjct: 177 --GTSFMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDIWSVG 212
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM-----VIRA-DRRAEKYFRRGAR 358
           CI+ E+  G  LF   ++++    ++E++  P P  M      +R       KY      
Sbjct: 213 CIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYSFE 272
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 273 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 317
Query: 419 HPFFT 423
           HP+  
Sbjct: 318 HPYIN 322

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 153/365 (41%), Gaps = 60/365 (16%)
Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 3   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 62
Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ VL +   H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 63  NQTHAKRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ- 120
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 121 ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA 176
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P+                      V TR+YRAPEVILG+G+    D+WSVG
Sbjct: 177 --GTSFMMTPE----------------------VVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGAR 358
           CI+ E+  G  LF   ++++    ++E++  P P  M      V        KY      
Sbjct: 213 CIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFE 272
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 273 KLFPDVLFPADS---------------EHNALKASQARDLLSKMLVIDASKRISVDEALQ 317
Query: 419 HPFFT 423
           HP+  
Sbjct: 318 HPYIN 322

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 91/343 (26%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKY--REAAMIEIDVLQRL 145
            + RY+    +G+G+FG+V+ C D    +  A+K++  R + +   +E+ + E+ +L++L
Sbjct: 24  FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL 83
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
              +I     +++  +F+ + +  +V E   G  L+D +     R   +D  R + RQ+L
Sbjct: 84  DHPNI-----MKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK-RFSEVDAAR-IIRQVL 136
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + +MH+ +++H DLKPEN+LL S               SKD +          I++ID
Sbjct: 137 SGITYMHKNKIVHRDLKPENLLLES--------------KSKDAN----------IRIID 172
Query: 265 FG-STTFE-HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           FG ST FE  +     + T +Y APEV+ G  ++  CD+WS G IL  L SG   F    
Sbjct: 173 FGLSTHFEASKKMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPF---- 227
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK---LLR 379
                                                   +GA   D ++ V K      
Sbjct: 228 ----------------------------------------NGANEYDILKKVEKGKYTFE 247
Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           LP    + V  SA DLI   + +L Y P+ R+ AR+AL H + 
Sbjct: 248 LPQ--WKKVSESAKDLI---RKMLTYVPSMRISARDALDHEWI 285

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 141/342 (41%), Gaps = 84/342 (24%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRL 145
               RY I+  +G+G+FG+V++C D   ++  A+K++      NK     + E+++L++L
Sbjct: 19  TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL 78
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
              +I     +++    +  +   IV E   G  L+D + K   + F       + +Q+ 
Sbjct: 79  DHPNI-----MKLFEILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVF 131
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + +MH+  ++H DLKPENILL S E                        K   IK+ID
Sbjct: 132 SGITYMHKHNIVHRDLKPENILLESKE------------------------KDCDIKIID 167
Query: 265 FGSTTFEHQDHSYV--VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           FG +T   Q+      + T +Y APEV+ G  ++  CD+WS G IL  L SG   F    
Sbjct: 168 FGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKN 226
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
             + L  +E                   KY       D P   T  D             
Sbjct: 227 EYDILKRVE-----------------TGKY-----AFDLPQWRTISD------------- 251
Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                      D  DL++ +L + P+ R+ A + L HP+  +
Sbjct: 252 -----------DAKDLIRKMLTFHPSLRITATQCLEHPWIQK 282

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 141/342 (41%), Gaps = 84/342 (24%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRL 145
               RY I+  +G+G+FG+V++C D   ++  A+K++      NK     + E+++L++L
Sbjct: 19  TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL 78
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
              +I     +++    +  +   IV E   G  L+D + K   + F       + +Q+ 
Sbjct: 79  DHPNI-----MKLFEILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVF 131
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + +MH+  ++H DLKPENILL S E                        K   IK+ID
Sbjct: 132 SGITYMHKHNIVHRDLKPENILLESKE------------------------KDCDIKIID 167
Query: 265 FGSTTFEHQDHSYV--VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           FG +T   Q+      + T +Y APEV+ G  ++  CD+WS G IL  L SG   F    
Sbjct: 168 FGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKN 226
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
             + L  +E                   KY       D P   T  D             
Sbjct: 227 EYDILKRVE-----------------TGKY-----AFDLPQWRTISD------------- 251
Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                      D  DL++ +L + P+ R+ A + L HP+  +
Sbjct: 252 -----------DAKDLIRKMLTFHPSLRITATQCLEHPWIQK 282

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 153/365 (41%), Gaps = 70/365 (19%)
Query: 79  DGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--------RS 127
           +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK +         +
Sbjct: 8   NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHA 67
Query: 128 INKYREAAMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
              YRE       VL ++  H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 68  KRAYREL------VLMKVVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLSQVIQ- 120
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 121 ---MELDHERMSYLLYQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFG-LARTA 176
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P                     YVV TR+YRAPEVILG+G+    D+WSVG
Sbjct: 177 --GTSFMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDIWSVG 212
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM-----VIRA-DRRAEKYFRRGAR 358
            I+ E+  G  LF   ++++    ++E++  P P  M      +R       KY      
Sbjct: 213 VIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPSPEFMKKLQPTVRTYVENRPKYAGYSFE 272
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 273 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 317
Query: 419 HPFFT 423
           HP+  
Sbjct: 318 HPYIN 322

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 149/352 (42%), Gaps = 58/352 (16%)
Query: 84  FAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEID 140
           F +  ++   Y I+  +G G +G V         + VAIK + +   +    +  + E+ 
Sbjct: 47  FDVTFDVGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELK 106
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYR--NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE 198
           +L+     +I   + + +R    Y     + +V + +   L+  +  +S +   ++ VR 
Sbjct: 107 ILKHFKHDNIIAIKDI-LRPTVPYGEFKSVYVVLDLMESDLHQII--HSSQPLTLEHVRY 163
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLP 255
              QLL  + +MH  ++IH DLKP N+L+     +K+ D+   + L  S  +  YF    
Sbjct: 164 FLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFM--- 220
Query: 256 KSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSG 314
                               +  V+TR YRAPE++L L  +    DLWSVGCI  E+ + 
Sbjct: 221 --------------------TEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLAR 260
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
             LF     +  L ++  VLG  P   VI+                    A   + +RA 
Sbjct: 261 RQLFPGKNYVHQLQLIMMVLG-TPSPAVIQ--------------------AVGAERVRAY 299
Query: 375 WKLLRLPNLIMQHVDHSAGD--LIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + L     +     +   D   + LL  +LR++P+ R+ A  ALRHPF  +
Sbjct: 300 IQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAK 351

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 25  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 75
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 76  LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQ----MELDHERMSYL 131
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 132 LYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFG-LARTA--GTSFMMTP---- 184
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 185 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 226
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 227 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 284
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 285 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 322

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 18  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 68
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 69  LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQ----MELDHERMSYL 124
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 125 LYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFG-LARTA--GTSFMMTP---- 177
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 178 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 219
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 220 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 277
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 278 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 315

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 38/232 (16%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRL 145
               RY I+  +G+G+FG+V++C D   ++  A+K++      NK     + E+++L++L
Sbjct: 19  TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL 78
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
              +I     +++    +  +   IV E   G  L+D + K   + F       + +Q+ 
Sbjct: 79  DHPNI-----MKLFEILEDSSSFYIVGELYTGGELFDEIIKR--KRFSEHDAARIIKQVF 131
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + +MH+  ++H DLKPENILL S E                        K   IK+ID
Sbjct: 132 SGITYMHKHNIVHRDLKPENILLESKE------------------------KDCDIKIID 167
Query: 265 FGSTTFEHQDHSYV--VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           FG +T   Q+      + T +Y APEV+ G  ++  CD+WS G IL  L SG
Sbjct: 168 FGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSG 218

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 148/352 (42%), Gaps = 58/352 (16%)
Query: 84  FAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEID 140
           F +  ++   Y I+  +G G +G V         + VAIK + +   +    +  + E+ 
Sbjct: 46  FDVTFDVGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELK 105
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYR--NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE 198
           +L+     +I   + + +R    Y     + +V + +   L+  +  +S +   ++ VR 
Sbjct: 106 ILKHFKHDNIIAIKDI-LRPTVPYGEFKSVYVVLDLMESDLHQII--HSSQPLTLEHVRY 162
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF---LSRSSKDGSYFKNLP 255
              QLL  + +MH  ++IH DLKP N+L+     +K+ D+     L  S  +  YF    
Sbjct: 163 FLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFM--- 219
Query: 256 KSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSG 314
                               +  V+TR YRAPE++L L  +    DLWSVGCI  E+ + 
Sbjct: 220 --------------------TEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLAR 259
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
             LF     +  L ++  VLG  P   VI+                    A   + +RA 
Sbjct: 260 RQLFPGKNYVHQLQLIMMVLG-TPSPAVIQ--------------------AVGAERVRAY 298
Query: 375 WKLLRLPNLIMQHVDHSAGD--LIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + L     +     +   D   + LL  +LR++P+ R+ A  ALRHPF  +
Sbjct: 299 IQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAK 350

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 144/343 (41%), Gaps = 57/343 (16%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREA--AMIEIDVLQRLARHD 149
           RY+ L  +G G  G V   +D      VAIK + R       A  A  E+ VL +   H 
Sbjct: 25  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYREL-VLMKXVNHK 83
Query: 150 --IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             I        +   +    + +V E +  +L   ++         + +  L  Q+L  +
Sbjct: 84  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQ----MELDHERMSYLLYQMLXGI 139
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
             +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P            
Sbjct: 140 KHLHSAGIIHRDLKPSNIVVKSDXTLKILDFG-LARTA--GTSFMMTP------------ 184
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                    YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF   + ++  
Sbjct: 185 ---------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQW 234
Query: 328 -AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
             ++E++  P P  M      V        KY        +PD     DS          
Sbjct: 235 NKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS---------- 284
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 285 -----EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 322

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 153/365 (41%), Gaps = 60/365 (16%)
Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 8   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 67
Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ VL +   H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 68  NQTHAKRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ- 125
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 126 ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA 181
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P                     YVV TR+YRAPEVILG+G+    DLWSVG
Sbjct: 182 --GTSFMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDLWSVG 217
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGAR 358
           CI+ E+   + LF   + ++    ++E++  P P  M      V        KY      
Sbjct: 218 CIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFE 277
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 278 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 322
Query: 419 HPFFT 423
           HP+  
Sbjct: 323 HPYIN 327

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 152/360 (42%), Gaps = 60/360 (16%)
Query: 79  DGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREA 134
           +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R       A
Sbjct: 2   NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHA 61
Query: 135 --AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRS 190
             A  E+ VL +   H   IG       +   +    + IV E +  +L   ++      
Sbjct: 62  KRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ----ME 116
Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
              + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ 
Sbjct: 117 LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTS 173
Query: 251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
           F   P                     YVV TR+YRAPEVILG+G+    DLWSVGCI+ E
Sbjct: 174 FMMTP---------------------YVV-TRYYRAPEVILGMGYKENVDLWSVGCIMGE 211
Query: 311 LCSGEALFQTHENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPD 363
           +   + LF   + ++    ++E++  P P  M      V        KY        +PD
Sbjct: 212 MVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPD 271
Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                DS               +H    A    DLL  +L  D ++R+   EAL+HP+  
Sbjct: 272 VLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYIN 316

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 151/349 (43%), Gaps = 64/349 (18%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHD 149
           +Y  L+K+G+GTFG+V +    +  + VA+K V   N+   +   A+ EI +LQ L   +
Sbjct: 18  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN 77
Query: 150 IGGTRCVQIRNWFDY---RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +     +       Y   +  I +VF+     L   L  N    F +  ++ + + LL  
Sbjct: 78  VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLL-SNVLVKFTLSEIKRVMQMLLNG 136
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H  +++H D+K  N+L+                 ++DG           +KL DFG
Sbjct: 137 LYYIHRNKILHRDMKAANVLI-----------------TRDG----------VLKLADFG 169
Query: 267 -----STTFEHQDHSYV--VSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF 318
                S     Q + Y   V T  YR PE++LG   +  P DLW  GCI+ E+ +   + 
Sbjct: 170 LARAFSLAKNSQPNRYXNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 229
Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATS--RDSMRAVWK 376
           Q +     LA++ ++ G +   +    D      +    +L+   G     +D ++A  +
Sbjct: 230 QGNTEQHQLALISQLCGSITPEVWPNVDN-----YELYEKLELVKGQKRKVKDRLKAYVR 284
Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                       D  A DLID    LL  DPA+R+ + +AL H FF  D
Sbjct: 285 ------------DPYALDLID---KLLVLDPAQRIDSDDALNHDFFWSD 318

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 151/349 (43%), Gaps = 64/349 (18%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHD 149
           +Y  L+K+G+GTFG+V +    +  + VA+K V   N+   +   A+ EI +LQ L   +
Sbjct: 19  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN 78
Query: 150 IGGTRCVQIRNWFDY---RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +     +       Y   +  I +VF+     L   L  N    F +  ++ + + LL  
Sbjct: 79  VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLL-SNVLVKFTLSEIKRVMQMLLNG 137
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H  +++H D+K  N+L+                 ++DG           +KL DFG
Sbjct: 138 LYYIHRNKILHRDMKAANVLI-----------------TRDG----------VLKLADFG 170
Query: 267 -----STTFEHQDHSYV--VSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF 318
                S     Q + Y   V T  YR PE++LG   +  P DLW  GCI+ E+ +   + 
Sbjct: 171 LARAFSLAKNSQPNRYXNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 230
Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATS--RDSMRAVWK 376
           Q +     LA++ ++ G +   +    D      +    +L+   G     +D ++A  +
Sbjct: 231 QGNTEQHQLALISQLCGSITPEVWPNVDN-----YELYEKLELVKGQKRKVKDRLKAYVR 285
Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                       D  A DLID    LL  DPA+R+ + +AL H FF  D
Sbjct: 286 ------------DPYALDLID---KLLVLDPAQRIDSDDALNHDFFWSD 319

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 151/349 (43%), Gaps = 64/349 (18%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHD 149
           +Y  L+K+G+GTFG+V +    +  + VA+K V   N+   +   A+ EI +LQ L   +
Sbjct: 19  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN 78
Query: 150 IGGTRCVQIRNWFDY---RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +     +       Y   +  I +VF+     L   L  N    F +  ++ + + LL  
Sbjct: 79  VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLL-SNVLVKFTLSEIKRVMQMLLNG 137
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H  +++H D+K  N+L+                 ++DG           +KL DFG
Sbjct: 138 LYYIHRNKILHRDMKAANVLI-----------------TRDG----------VLKLADFG 170
Query: 267 -----STTFEHQDHSYV--VSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF 318
                S     Q + Y   V T  YR PE++LG   +  P DLW  GCI+ E+ +   + 
Sbjct: 171 LARAFSLAKNSQPNRYXNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 230
Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATS--RDSMRAVWK 376
           Q +     LA++ ++ G +   +    D      +    +L+   G     +D ++A  +
Sbjct: 231 QGNTEQHQLALISQLCGSITPEVWPNVDN-----YELYEKLELVKGQKRKVKDRLKAYVR 285
Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                       D  A DLID    LL  DPA+R+ + +AL H FF  D
Sbjct: 286 ------------DPYALDLID---KLLVLDPAQRIDSDDALNHDFFWSD 319

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 144/343 (41%), Gaps = 57/343 (16%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREA--AMIEIDVLQRLARHD 149
           RY+ L  +G G  G V   +D      VAIK + R       A  A  E+ VL +   H 
Sbjct: 25  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYREL-VLMKXVNHK 83
Query: 150 --IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             I        +   +    + +V E +  +L   ++         + +  L  Q+L  +
Sbjct: 84  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLXQVIQ----MELDHERMSYLLYQMLCGI 139
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
             +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P            
Sbjct: 140 KHLHSAGIIHRDLKPSNIVVKSDXTLKILDFG-LARTA--GTSFMMTP------------ 184
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                    YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF   + ++  
Sbjct: 185 ---------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQW 234
Query: 328 -AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
             ++E++  P P  M      V        KY        +PD     DS          
Sbjct: 235 NKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS---------- 284
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 285 -----EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 322

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 137/351 (39%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   FD      VA+K + R       A         + A  ++ 
Sbjct: 23  RYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHA---------KRAYRELV 73
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   +    +     + +  L
Sbjct: 74  LLKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI----HMELDHERMSYL 129
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+     +S +   F   P    
Sbjct: 130 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTASTN---FMMTP---- 182
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ EL  G  +FQ
Sbjct: 183 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQ 224
Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR-----GARLD--WPDGATSRDSMR 372
             ++++    +   LG      +         Y        G   +  +PD     +S R
Sbjct: 225 GTDHIDQWNKVIEQLGTPSAEFMAALQPTVRNYVENRPAYPGIAFEELFPDWIFPSESER 284
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
              K                    DLL  +L  DP +R+   EALRHP+ T
Sbjct: 285 DKIK---------------TSQARDLLSKMLVIDPDKRISVDEALRHPYIT 320

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 151/349 (43%), Gaps = 64/349 (18%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---YREAAMIEIDVLQRLARHD 149
           +Y  L+K+G+GTFG+V +    +  + VA+K V   N+   +   A+ EI +LQ L   +
Sbjct: 19  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN 78
Query: 150 IGGTRCVQIRNWFDY---RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +     +       Y   +  I +VF+     L   L  N    F +  ++ + + LL  
Sbjct: 79  VVNLIEICRTKASPYNRCKASIYLVFDFCEHDLAGLL-SNVLVKFTLSEIKRVMQMLLNG 137
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H  +++H D+K  N+L+                 ++DG           +KL DFG
Sbjct: 138 LYYIHRNKILHRDMKAANVLI-----------------TRDG----------VLKLADFG 170
Query: 267 -----STTFEHQDHSYV--VSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF 318
                S     Q + Y   V T  YR PE++LG   +  P DLW  GCI+ E+ +   + 
Sbjct: 171 LARAFSLAKNSQPNRYXNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 230
Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATS--RDSMRAVWK 376
           Q +     LA++ ++ G +   +    D      +    +L+   G     +D ++A  +
Sbjct: 231 QGNTEQHQLALISQLCGSITPEVWPNVDN-----YELYEKLELVKGQKRKVKDRLKAYVR 285
Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                       D  A DLID    LL  DPA+R+ + +AL H FF  D
Sbjct: 286 ------------DPYALDLID---KLLVLDPAQRIDSDDALNHDFFWSD 319

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 152/365 (41%), Gaps = 60/365 (16%)
Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 3   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 62
Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ VL +   H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 63  NQTHAKRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ- 120
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 121 ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA 176
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P+                      V TR+YRAPEVILG+G+    DLWSVG
Sbjct: 177 --GTSFMMEPE----------------------VVTRYYRAPEVILGMGYKENVDLWSVG 212
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGAR 358
           CI+ E+   + LF   + ++    ++E++  P P  M      V        KY      
Sbjct: 213 CIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFE 272
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 273 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 317
Query: 419 HPFFT 423
           HP+  
Sbjct: 318 HPYIN 322

>pdb|3JUH|A Chain A, Crystal Structure Of A Mutant Of Human Protein Kinase Ck2alpha With Altered Cosubstrate Specificity Length = 335

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 68/351 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           Y+++ K+G G + +V E  +    E VA+KI++ + K +    I+  +L+ L     GG 
Sbjct: 39  YQLVRKLGRGKYSEVFEAINITNNEKVAVKILKPVKKKKIKREIK--ILENLR----GGP 92
Query: 154 RCVQIRNWFD--YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             + + +           +VFE +  +  DF  K  Y++     +R    ++L+++ + H
Sbjct: 93  NIITLADIVKDPVSRTPALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCH 148
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            + ++H D+KP N+L +  E+ K                         ++LID+G   F 
Sbjct: 149 SMGIMHRDVKPHNVL-IDHEHRK-------------------------LRLIDWGLAEFY 182
Query: 272 H--QDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHL 327
           H  Q+++  V++R+++ PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L
Sbjct: 183 HPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQL 242
Query: 328 AMMERVLGPLPHH-----MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
             + +VLG    +       I  D R      R +R  W     S +             
Sbjct: 243 VRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSEN------------- 289
Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF---TRDVRRCG 430
              QH+   + + +D L  LLRYD   RL AREA+ HP+F    +D  R G
Sbjct: 290 ---QHL--VSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMG 335

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 63  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 113
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 114 LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYL 169
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 170 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP---- 222
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 223 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 264
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 265 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 322
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 323 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 360

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 63  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 113
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 114 LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYL 169
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 170 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP---- 222
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 223 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 264
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 265 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 322
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 323 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 360

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 151/343 (44%), Gaps = 91/343 (26%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKY--REAAMIEIDVLQRL 145
            + RY+    +G+G+FG+V+ C D    +  A+K++  R + +   +E+ + E+ +L++L
Sbjct: 24  FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL 83
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
              +I      ++  +F+ + +  +V E   G  L+D +     R   +D  R + RQ+L
Sbjct: 84  DHPNI-----XKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK-RFSEVDAARII-RQVL 136
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + + H+ +++H DLKPEN+LL S               SKD +          I++ID
Sbjct: 137 SGITYXHKNKIVHRDLKPENLLLES--------------KSKDAN----------IRIID 172
Query: 265 FG-STTFE-HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           FG ST FE  +     + T +Y APEV+ G  ++  CD+WS G IL  L SG   F    
Sbjct: 173 FGLSTHFEASKKXKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSGCPPF---- 227
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK---LLR 379
                                                   +GA   D ++ V K      
Sbjct: 228 ----------------------------------------NGANEYDILKKVEKGKYTFE 247
Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           LP    + V  SA DLI   +  L Y P+ R+ AR+AL H + 
Sbjct: 248 LPQ--WKKVSESAKDLI---RKXLTYVPSXRISARDALDHEWI 285

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 25  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 75
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 76  LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYL 131
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP---- 184
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 185 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 226
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 227 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 284
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 285 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 322

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 26  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 76
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 77  LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYL 132
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 133 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP---- 185
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 186 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 227
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 228 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 285
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 286 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 323

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 144/343 (41%), Gaps = 57/343 (16%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREA--AMIEIDVLQRLARHD 149
           RY+ L  +G G  G V   +D      VAIK + R       A  A  E+ VL +   H 
Sbjct: 25  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYREL-VLMKXVNHK 83
Query: 150 --IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             I        +   +    + +V E +  +L   ++         + +  L  Q+L  +
Sbjct: 84  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGI 139
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
             +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P            
Sbjct: 140 KHLHSAGIIHRDLKPSNIVVKSDXTLKILDFG-LARTA--GTSFMMTP------------ 184
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                    YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF   + ++  
Sbjct: 185 ---------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQW 234
Query: 328 -AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
             ++E++  P P  M      V        KY        +PD     DS          
Sbjct: 235 NKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS---------- 284
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 285 -----EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 322

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 18  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 68
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 69  LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYL 124
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 125 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP---- 177
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 178 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 219
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 220 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 277
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 278 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 315

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 26  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 76
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 77  LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYL 132
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 133 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP---- 185
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 186 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 227
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 228 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 285
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 286 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 323

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 19  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 69
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 70  LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYL 125
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 126 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP---- 178
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 179 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 220
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 221 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 278
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 279 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 316

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 25  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 75
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 76  LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYL 131
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP---- 184
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 185 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 226
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 227 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 284
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 285 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 322

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 85.1 bits (209), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 24  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 74
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 75  LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYL 130
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 131 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP---- 183
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 184 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 225
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 226 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 283
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 284 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 321

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 140/351 (39%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   FD      VA+K + R       A         + A  ++ 
Sbjct: 25  RYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHA---------KRAYRELV 75
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   +    +     + +  L
Sbjct: 76  LLKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI----HMELDHERMSYL 131
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++              
Sbjct: 132 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA-------------- 176
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
               +F  T +        V TR+YRAPEVILG+G+    D+WSVGCI+ EL  G  +FQ
Sbjct: 177 --CTNFMMTPY--------VVTRYYRAPEVILGMGYAANVDIWSVGCIMGELVKGCVIFQ 226
Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR-----GARLD--WPDGATSRDSMR 372
             ++++    +   LG      +         Y        G + +  +PD     +S R
Sbjct: 227 GTDHIDQWNKVIEQLGTPSAEFMAALQPTVRNYVENRPKYPGIKFEELFPDWIFPSESER 286
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
              K                    DLL  +L  DP +R+   EALRHP+ T
Sbjct: 287 DKIK---------------TSQARDLLSKMLVIDPDKRISVDEALRHPYIT 322

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 144/351 (41%), Gaps = 73/351 (20%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIG 151
           RY+ L  +G G  G V   +D      VAIK + R       A         + A  ++ 
Sbjct: 19  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHA---------KRAYRELV 69
Query: 152 GTRCVQIRNWFDYRN------------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             +CV  +N     N             + +V E +  +L   ++         + +  L
Sbjct: 70  LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYL 125
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++  G+ F   P    
Sbjct: 126 LYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA--GTSFMMTP---- 178
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                            YVV TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF 
Sbjct: 179 -----------------YVV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 220
Query: 320 THENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
             + ++    ++E++  P P  M      V        KY        +PD     DS  
Sbjct: 221 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADS-- 278
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                        +H    A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 279 -------------EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 316

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 152/365 (41%), Gaps = 60/365 (16%)
Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 3   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 62
Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ VL +   H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 63  NQTHAKRAYREL-VLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQ- 120
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S   +K+ D+  L+R++
Sbjct: 121 ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFG-LARTA 176
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
             G+ F   P+                      V TR+YRAPEVILG+G+    D+WSVG
Sbjct: 177 --GTSFMMEPE----------------------VVTRYYRAPEVILGMGYKENVDIWSVG 212
Query: 306 CILVELCSGEALFQTHENLEHL-AMMERVLGPLPHHM------VIRADRRAEKYFRRGAR 358
           CI+ E+   + LF   + ++    ++E++  P P  M      V        KY      
Sbjct: 213 CIMGEMVCHKILFPGRDYIDQWNKVIEQLGTPCPAFMKKLQPTVRNYVENRPKYAGYSFE 272
Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
             +PD     DS               +H    A    DLL  +L  D ++R+   EAL+
Sbjct: 273 KLFPDVLFPADS---------------EHNKLKASQARDLLSKMLVIDASKRISVDEALQ 317
Query: 419 HPFFT 423
           HP+  
Sbjct: 318 HPYIN 322

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 38/254 (14%)
Query: 81  HYVFAIGENLTPRYRILSK---MGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAM 136
           H +    +     +  +SK   +G G FGQV +C +      +A KI+++   K +E   
Sbjct: 75  HRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVK 134
Query: 137 IEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDL 195
            EI V+ +L   ++     +Q+ + F+ +N I +V E + G  L+D +   SY    +D 
Sbjct: 135 NEISVMNQLDHANL-----IQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDT 189
Query: 196 VRELGRQLLESVAFMHELRLIHTDLKPENILLVS--AEYVKVPDYKFLSRSSKDGSYFKN 253
           +  + +Q+ E +  MH++ ++H DLKPENIL V+  A+ +K+ D+  L+R  K     K 
Sbjct: 190 ILFM-KQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFG-LARRYKPREKLK- 246
Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                    ++FG              T  + APEV+     ++P D+WSVG I   L S
Sbjct: 247 ---------VNFG--------------TPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLS 283
Query: 314 GEALFQTHENLEHL 327
           G + F    + E L
Sbjct: 284 GLSPFLGDNDAETL 297

>pdb|3BQC|A Chain A, High Ph-Value Crystal Structure Of Emodin In Complex With The Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 125/274 (45%), Gaps = 60/274 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 110 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 164
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 165 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 199
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 200 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 259
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 260 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 301
Query: 400 QGLLRYDPAERLKAREALRHPFF---TRDVRRCG 430
             LLRYD   RL AREA+ HP+F    +D  R G
Sbjct: 302 DKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMG 335

>pdb|3Q9W|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With Emodin At Ph 8.5 Length = 336

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 125/274 (45%), Gaps = 60/274 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 110 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 164
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 165 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 199
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 200 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 259
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 260 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 301
Query: 400 QGLLRYDPAERLKAREALRHPFF---TRDVRRCG 430
             LLRYD   RL AREA+ HP+F    +D  R G
Sbjct: 302 DKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMG 335

>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 337

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 125/274 (45%), Gaps = 60/274 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 110 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 164
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 165 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 199
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 200 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 259
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 260 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 301
Query: 400 QGLLRYDPAERLKAREALRHPFF---TRDVRRCG 430
             LLRYD   RL AREA+ HP+F    +D  R G
Sbjct: 302 DKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMG 335

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 162/364 (44%), Gaps = 48/364 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV-RSINKYREAAMI--EIDVLQRLARHD 149
            Y I   +G G++G V   +D   ++ VAIK V R      +   I  EI +L RL    
Sbjct: 27  NYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDY 86
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV-- 207
           I     + I +     + + IV E     L    +       PI L  E  + +L ++  
Sbjct: 87  IIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKT------PIFLTEEHIKTILYNLLL 140
Query: 208 --AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS--RSSKDGSYFKNLPKSSAIKLI 263
              F+HE  +IH DLKP N LL     VKV D+       S KD +   +L ++      
Sbjct: 141 GENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGP- 199
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTH 321
              +   + Q  S+VV TR YRAPE+IL L  NY    D+WS GCI  EL +   + Q+H
Sbjct: 200 --HNKNLKKQLTSHVV-TRWYRAPELIL-LQENYTKSIDIWSTGCIFAELLN---MLQSH 252
Query: 322 ENLEHLAMMERV-LGPLPHHMVIRADRRAEKYFRRGARLDWPD------GATSRDSMR-- 372
            N        R  L P      +  DR ++K   +  R D  +      G  + D ++  
Sbjct: 253 IN----DPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNR-DQLNIIFNIIGTPTEDDLKNI 307
Query: 373 ---AVWKLLRL-----PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
               V K ++L     P  + Q     + D I+LL+ +L+++P +R+   +AL HP+  +
Sbjct: 308 NKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDHPYL-K 366
Query: 425 DVRR 428
           DVR+
Sbjct: 367 DVRK 370

>pdb|2ZJW|A Chain A, Crystal Structure Of Human Ck2 Alpha Complexed With Ellagic Acid Length = 340

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 125/274 (45%), Gaps = 60/274 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 115 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 169
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 170 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 204
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 205 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 264
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 265 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 306
Query: 400 QGLLRYDPAERLKAREALRHPFF---TRDVRRCG 430
             LLRYD   RL AREA+ HP+F    +D  R G
Sbjct: 307 DKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMG 340

>pdb|1PJK|A Chain A, Crystal Structure Of A C-terminal Deletion Mutant Of Human Protein Kinase Ck2 Catalytic Subunit Length = 334

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 125/274 (45%), Gaps = 60/274 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 109 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 163
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 164 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 198
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 199 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 258
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 259 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 300
Query: 400 QGLLRYDPAERLKAREALRHPFF---TRDVRRCG 430
             LLRYD   RL AREA+ HP+F    +D  R G
Sbjct: 301 DKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMG 334

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 149/356 (41%), Gaps = 70/356 (19%)
Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRL 145
           G +L  RY  L  +G G  G V    DN+  + VAIK IV +  +  + A+ EI +++RL
Sbjct: 6   GFDLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRL 65
Query: 146 ARHDI---------GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLV 196
              +I          G++           N + IV E +   L + L +        +  
Sbjct: 66  DHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPLLE---EHA 122
Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
           R    QLL  + ++H   ++H DLKP N+ + + + V                       
Sbjct: 123 RLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLV----------------------- 159
Query: 257 SSAIKLIDFG-----STTFEHQDH-SYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILV 309
              +K+ DFG        + H+ H S  + T+ YR+P ++L    +    D+W+ GCI  
Sbjct: 160 ---LKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFA 216
Query: 310 ELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD 369
           E+ +G+ LF     LE    M+ +L  +P   V+  + R E        +        R+
Sbjct: 217 EMLTGKTLFAGAHELEQ---MQLILESIP---VVHEEDRQELLSVIPVYI--------RN 262
Query: 370 SMRAVWKLLR--LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
            M    K L   LP +        + + +D L+ +L + P +RL A EAL HP+ +
Sbjct: 263 DMTEPHKPLTQLLPGI--------SREAVDFLEQILTFSPMDRLTAEEALSHPYMS 310

>pdb|3U87|A Chain A, Structure Of A Chimeric Construct Of Human Ck2alpha And Human Ck2alpha' In Complex With A Non-hydrolysable Atp-analogue Length = 349

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 57/273 (20%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 110 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 164
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 165 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 199
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 200 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 259
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 260 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 301
Query: 400 QGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
             LLRYD   RL AREA+ HP+F   V+    P
Sbjct: 302 DKLLRYDHQSRLTAREAMEHPYFYPVVKEQSQP 334

>pdb|3Q04|A Chain A, Crystal Structure Of The Apo-Form Of Human Ck2 Alpha At Ph 8.5 Length = 328

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 57/268 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 108 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 162
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 163 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 197
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 198 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 257
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 258 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 299
Query: 400 QGLLRYDPAERLKAREALRHPFFTRDVR 427
             LLRYD   RL AREA+ HP+F   V+
Sbjct: 300 DKLLRYDHQSRLTAREAMEHPYFYTVVK 327

>pdb|2R7I|A Chain A, Crystal Structure Of Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 57/268 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 110 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 164
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 165 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 199
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 200 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 259
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 260 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 301
Query: 400 QGLLRYDPAERLKAREALRHPFFTRDVR 427
             LLRYD   RL AREA+ HP+F   V+
Sbjct: 302 DKLLRYDHQSRLTAREAMEHPYFYTVVK 329

>pdb|3H30|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 With 5,6-Dichloro-1-Beta-D- Ribofuranosylbenzimidazole Length = 334

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 57/268 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 110 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 164
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 165 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 199
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 200 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 259
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 260 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 301
Query: 400 QGLLRYDPAERLKAREALRHPFFTRDVR 427
             LLRYD   RL AREA+ HP+F   V+
Sbjct: 302 DKLLRYDHQSRLTAREAMEHPYFYTVVK 329

>pdb|3NSZ|A Chain A, Human Ck2 Catalytic Domain In Complex With Amppn Length = 330

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 57/268 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 109 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 163
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 164 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 198
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 199 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 258
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 259 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 300
Query: 400 QGLLRYDPAERLKAREALRHPFFTRDVR 427
             LLRYD   RL AREA+ HP+F   V+
Sbjct: 301 DKLLRYDHQSRLTAREAMEHPYFYTVVK 328

>pdb|3NGA|A Chain A, Human Ck2 Catalytic Domain In Complex With Cx-4945 Length = 333

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 57/268 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 110 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 164
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 165 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 199
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 200 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 259
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 260 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 301
Query: 400 QGLLRYDPAERLKAREALRHPFFTRDVR 427
             LLRYD   RL AREA+ HP+F   V+
Sbjct: 302 DKLLRYDHQSRLTAREAMEHPYFYTVVK 329

>pdb|3MB6|A Chain A, Human Ck2 Catalytic Domain In Complex With A Difurane Derivative Inhibitor (Cpa) Length = 331

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 123/268 (45%), Gaps = 57/268 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  +  DF  K  Y++     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 110 ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 164
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 165 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 199
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 200 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 259
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 260 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 301
Query: 400 QGLLRYDPAERLKAREALRHPFFTRDVR 427
             LLRYD   RL AREA+ HP+F   V+
Sbjct: 302 DKLLRYDHQSRLTAREAMEHPYFYTVVK 329

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 145/345 (42%), Gaps = 87/345 (25%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQ 143
           + L+ RY+ + K+G G +G+V+ C D       AIKI++    +      A + E+ VL+
Sbjct: 17  QGLSDRYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLK 76
Query: 144 RLARHDIGGTRCVQIRNWF-DYRNHICIVFEKLGPSLYD-FLRKNSYRSFPIDLVRELGR 201
           +L   +I     +++  +F D RN+  ++    G  L+D  + +  +      ++    +
Sbjct: 77  QLDHPNI-----MKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVDAAVIM---K 128
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+L    ++H+  ++H DLKPEN+LL S               S+D          + IK
Sbjct: 129 QVLSGTTYLHKHNIVHRDLKPENLLLES--------------KSRD----------ALIK 164
Query: 262 LIDFG-STTFE-HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
           ++DFG S  FE        + T +Y APEV L   ++  CD+WS G IL  L  G   F 
Sbjct: 165 IVDFGLSAHFEVGGKMKERLGTAYYIAPEV-LRKKYDEKCDVWSCGVILYILLCGYPPFG 223
Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
              + E L  +E+  G                        D PD     D  + + KL  
Sbjct: 224 GQTDQEILKRVEK--GKFS--------------------FDPPDWTQVSDEAKQLVKL-- 259
Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                                 +L Y+P++R+ A EAL HP+  +
Sbjct: 260 ----------------------MLTYEPSKRISAEEALNHPWIVK 282

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 146/364 (40%), Gaps = 91/364 (25%)
Query: 80  GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREA- 134
           G ++    + L   Y +   +G G  G+V   F+ +  + VAIKI+     +I   REA 
Sbjct: 4   GSHMSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREAD 63
Query: 135 ----AMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRS 190
                  EI++L++L    I     ++I+N+FD  ++  ++    G  L+D +  N  + 
Sbjct: 64  PALNVETEIEILKKLNHPCI-----IKIKNFFDAEDYYIVLELMEGGELFDKVVGN--KR 116
Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
                 +    Q+L +V ++HE  +IH DLKPEN+LL S E                   
Sbjct: 117 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQE------------------- 157
Query: 251 FKNLPKSSAIKLIDFGSTTF--EHQDHSYVVSTRHYRAPEVILGL---GWNYPCDLWSVG 305
                +   IK+ DFG +    E      +  T  Y APEV++ +   G+N   D WS+G
Sbjct: 158 -----EDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLG 212
Query: 306 CILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGA 365
            IL    SG   F  H                   + ++    + KY             
Sbjct: 213 VILFICLSGYPPFSEHRT----------------QVSLKDQITSGKY------------- 243
Query: 366 TSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT-R 424
              + +  VW            V   A   +DL++ LL  DP  R    EALRHP+    
Sbjct: 244 ---NFIPEVW----------AEVSEKA---LDLVKKLLVVDPKARFTTEEALRHPWLQDE 287
Query: 425 DVRR 428
           D++R
Sbjct: 288 DMKR 291

>pdb|4DGL|C Chain C, Crystal Structure Of The Ck2 Tetrameric Holoenzyme Length = 335

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 124/274 (45%), Gaps = 60/274 (21%)
Query: 169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV 228
            +VFE +  + +  LR+    +     +R    ++L+++ + H + ++H D+KP N++ +
Sbjct: 110 ALVFEHVNNTDFKQLRQ----TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM-I 164
Query: 229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRA 286
             E+ K                         ++LID+G   F H  Q+++  V++R+++ 
Sbjct: 165 DHEHRK-------------------------LRLIDWGLAEFYHPGQEYNVRVASRYFKG 199
Query: 287 PEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPLPHH---- 340
           PE+++    ++Y  D+WS+GC+L  +    E  F  H+N + L  + +VLG    +    
Sbjct: 200 PELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYID 259
Query: 341 -MVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL 399
              I  D R      R +R  W     S +                QH+   + + +D L
Sbjct: 260 KYNIELDPRFNDILGRHSRKRWERFVHSEN----------------QHL--VSPEALDFL 301
Query: 400 QGLLRYDPAERLKAREALRHPFF---TRDVRRCG 430
             LLRYD   RL AREA+ HP+F    +D  R G
Sbjct: 302 DKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMG 335

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 143/349 (40%), Gaps = 92/349 (26%)
Query: 96  ILSK-MGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREA-----AMIEIDVLQRL 145
           I+SK +G G  G+V   F+ +  + VAIKI+     +I   REA        EI++L++L
Sbjct: 13  IMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL 72
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
               I     ++I+N+FD  ++  ++    G  L+D +  N  +       +    Q+L 
Sbjct: 73  NHPCI-----IKIKNFFDAEDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLL 125
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V ++HE  +IH DLKPEN+LL S E                        +   IK+ DF
Sbjct: 126 AVQYLHENGIIHRDLKPENVLLSSQE------------------------EDCLIKITDF 161
Query: 266 GSTTF--EHQDHSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALFQT 320
           G +    E      +  T  Y APEV++ +   G+N   D WS+G IL    SG   F  
Sbjct: 162 GHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE 221
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
           H                   + ++    + KY                + +  VW     
Sbjct: 222 HRT----------------QVSLKDQITSGKY----------------NFIPEVW----- 244
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT-RDVRR 428
                  V   A   +DL++ LL  DP  R    EALRHP+    D++R
Sbjct: 245 -----AEVSEKA---LDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKR 285

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 143/349 (40%), Gaps = 92/349 (26%)
Query: 96  ILSK-MGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREA-----AMIEIDVLQRL 145
           I+SK +G G  G+V   F+ +  + VAIKI+     +I   REA        EI++L++L
Sbjct: 13  IMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL 72
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
               I     ++I+N+FD  ++  ++    G  L+D +  N  +       +    Q+L 
Sbjct: 73  NHPCI-----IKIKNFFDAEDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLL 125
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V ++HE  +IH DLKPEN+LL S E                        +   IK+ DF
Sbjct: 126 AVQYLHENGIIHRDLKPENVLLSSQE------------------------EDCLIKITDF 161
Query: 266 GSTTF--EHQDHSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALFQT 320
           G +    E      +  T  Y APEV++ +   G+N   D WS+G IL    SG   F  
Sbjct: 162 GHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE 221
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
           H                   + ++    + KY                + +  VW     
Sbjct: 222 HRT----------------QVSLKDQITSGKY----------------NFIPEVW----- 244
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT-RDVRR 428
                  V   A   +DL++ LL  DP  R    EALRHP+    D++R
Sbjct: 245 -----AEVSEKA---LDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKR 285

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 143/349 (40%), Gaps = 92/349 (26%)
Query: 96  ILSK-MGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREA-----AMIEIDVLQRL 145
           I+SK +G G  G+V   F+ +  + VAIKI+     +I   REA        EI++L++L
Sbjct: 12  IMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL 71
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
               I     ++I+N+FD  ++  ++    G  L+D +  N  +       +    Q+L 
Sbjct: 72  NHPCI-----IKIKNFFDAEDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLL 124
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V ++HE  +IH DLKPEN+LL S E                        +   IK+ DF
Sbjct: 125 AVQYLHENGIIHRDLKPENVLLSSQE------------------------EDCLIKITDF 160
Query: 266 GSTTF--EHQDHSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALFQT 320
           G +    E      +  T  Y APEV++ +   G+N   D WS+G IL    SG   F  
Sbjct: 161 GHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE 220
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
           H                   + ++    + KY                + +  VW     
Sbjct: 221 HRT----------------QVSLKDQITSGKY----------------NFIPEVW----- 243
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT-RDVRR 428
                  V   A   +DL++ LL  DP  R    EALRHP+    D++R
Sbjct: 244 -----AEVSEKA---LDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKR 284

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 143/349 (40%), Gaps = 92/349 (26%)
Query: 96  ILSK-MGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREA-----AMIEIDVLQRL 145
           I+SK +G G  G+V   F+ +  + VAIKI+     +I   REA        EI++L++L
Sbjct: 13  IMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL 72
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
               I     ++I+N+FD  ++  ++    G  L+D +  N  +       +    Q+L 
Sbjct: 73  NHPCI-----IKIKNFFDAEDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLL 125
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V ++HE  +IH DLKPEN+LL S E                        +   IK+ DF
Sbjct: 126 AVQYLHENGIIHRDLKPENVLLSSQE------------------------EDCLIKITDF 161
Query: 266 GSTTF--EHQDHSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALFQT 320
           G +    E      +  T  Y APEV++ +   G+N   D WS+G IL    SG   F  
Sbjct: 162 GHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE 221
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
           H                   + ++    + KY                + +  VW     
Sbjct: 222 HRT----------------QVSLKDQITSGKY----------------NFIPEVW----- 244
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT-RDVRR 428
                  V   A   +DL++ LL  DP  R    EALRHP+    D++R
Sbjct: 245 -----AEVSEKA---LDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKR 285

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 142/343 (41%), Gaps = 87/343 (25%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRL 145
           L+ RY+ + K+G G +G+V+ C D       AIKI++    +      A + E+ VL++L
Sbjct: 2   LSDRYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQL 61
Query: 146 ARHDIGGTRCVQIRNWF-DYRNHICIVFEKLGPSLYD-FLRKNSYRSFPIDLVRELGRQL 203
              +I     +++  +F D RN+  ++    G  L+D  + +  +      ++    +Q+
Sbjct: 62  DHPNI-----MKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQKFSEVDAAVIM---KQV 113
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L    ++H+  ++H DLKPEN+LL S                          + + IK++
Sbjct: 114 LSGTTYLHKHNIVHRDLKPENLLLESK------------------------SRDALIKIV 149
Query: 264 DFG-STTFE-HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
           DFG S  FE        + T +Y APEV L   ++  CD+WS G IL  L  G   F   
Sbjct: 150 DFGLSAHFEVGGKMKERLGTAYYIAPEV-LRKKYDEKCDVWSCGVILYILLCGYPPFGGQ 208
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
            + E L  +E+  G                        D PD     D  + + KL    
Sbjct: 209 TDQEILKRVEK--GKFS--------------------FDPPDWTQVSDEAKQLVKL---- 242
Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                               +L Y+P++R+ A EAL HP+  +
Sbjct: 243 --------------------MLTYEPSKRISAEEALNHPWIVK 265

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/338 (21%), Positives = 137/338 (40%), Gaps = 85/338 (25%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDI 150
           Y IL ++G G FG V  C +     +   K + +   ++KY      EI ++ +L     
Sbjct: 53  YDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY--TVKNEISIMNQLHH--- 107
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
              + + + + F+ +  + ++ E L G  L+D +    Y+    +++  + RQ  E +  
Sbjct: 108 --PKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYM-RQACEGLKH 164
Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           MHE  ++H D+KPENI+  +                          K+S++K+IDFG  T
Sbjct: 165 MHEHSIVHLDIKPENIMCETK-------------------------KASSVKIIDFGLAT 199
Query: 270 FEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
             + D       +T  + APE++      +  D+W++G +   L SG + F   ++LE L
Sbjct: 200 KLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETL 259
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
             ++R                           DW       D+  +V             
Sbjct: 260 QNVKRC--------------------------DW---EFDEDAFSSV------------- 277
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
               + +  D ++ LL+ +P +RL   +AL HP+   D
Sbjct: 278 ----SPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGD 311

>pdb|3KXG|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In Complex With The Inhibitor 3,4,5,6,7-Pentabromo-1h-Indazole (K64) Length = 327

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 67/272 (24%)
Query: 162 FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK 221
           F+Y N+    F+ L P+L D+             +R    +LL+++ + H   ++H D+K
Sbjct: 107 FEYVNNTD--FKVLYPTLTDYD------------IRYYIYELLKALDYCHSQGIMHRDVK 152
Query: 222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVV 279
           P N+++         D++                    ++LID+G   F H  ++++  V
Sbjct: 153 PHNVMI---------DHEL-----------------RKLRLIDWGLAEFYHPGKEYNVRV 186
Query: 280 STRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPL 337
           ++R+++ PE+++ L  ++Y  D+WS+GC+   +    E  F  H+N + L  + +VLG  
Sbjct: 187 ASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTD 246
Query: 338 PHHMV-----IRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
             ++      I  D + E    R +R  W                L+  N   QH+   +
Sbjct: 247 GLNVYLNKYRIELDPQLEALVGRHSRKPW----------------LKFMNADNQHL--VS 288
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + ID L  LLRYD  ERL A EA+ HP+F +
Sbjct: 289 PEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|4DGN|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The Inhibitor Luteolin Length = 326

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 67/272 (24%)
Query: 162 FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK 221
           F+Y N+    F+ L P+L D+             +R    +LL+++ + H   ++H D+K
Sbjct: 107 FEYVNNTD--FKVLYPTLTDYD------------IRYYIYELLKALDYCHSQGIMHRDVK 152
Query: 222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVV 279
           P N+++         D++                    ++LID+G   F H  ++++  V
Sbjct: 153 PHNVMI---------DHEL-----------------RKLRLIDWGLAEFYHPGKEYNVRV 186
Query: 280 STRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPL 337
           ++R+++ PE+++ L  ++Y  D+WS+GC+   +    E  F  H+N + L  + +VLG  
Sbjct: 187 ASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTD 246
Query: 338 PHHMV-----IRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
             ++      I  D + E    R +R  W                L+  N   QH+   +
Sbjct: 247 GLNVYLNKYRIELDPQLEALVGRHSRKPW----------------LKFMNADNQHL--VS 288
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + ID L  LLRYD  ERL A EA+ HP+F +
Sbjct: 289 PEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|3PVG|A Chain A, Crystal Structure Of Z. Mays Ck2 Alpha Subunit In Complex With The Inhibitor 4,5,6,7-Tetrabromo-1-Carboxymethylbenzimidazole (K68) Length = 331

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 67/272 (24%)
Query: 162 FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK 221
           F+Y N+    F+ L P+L D+             +R    +LL+++ + H   ++H D+K
Sbjct: 107 FEYVNNTD--FKVLYPTLTDYD------------IRYYIYELLKALDYCHSQGIMHRDVK 152
Query: 222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVV 279
           P N+++         D++                    ++LID+G   F H  ++++  V
Sbjct: 153 PHNVMI---------DHEL-----------------RKLRLIDWGLAEFYHPGKEYNVRV 186
Query: 280 STRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPL 337
           ++R+++ PE+++ L  ++Y  D+WS+GC+   +    E  F  H+N + L  + +VLG  
Sbjct: 187 ASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTD 246
Query: 338 PHHMV-----IRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
             ++      I  D + E    R +R  W                L+  N   QH+   +
Sbjct: 247 GLNVYLNKYRIELDPQLEALVGRHSRKPW----------------LKFMNADNQHL--VS 288
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + ID L  LLRYD  ERL A EA+ HP+F +
Sbjct: 289 PEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|2QC6|A Chain A, Protein Kinase Ck2 In Complex With Dbc Length = 332

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 67/272 (24%)
Query: 162 FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK 221
           F+Y N+    F+ L P+L D+             +R    +LL+++ + H   ++H D+K
Sbjct: 108 FEYVNNTD--FKVLYPTLTDYD------------IRYYIYELLKALDYCHSQGIMHRDVK 153
Query: 222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVV 279
           P N+++         D++                    ++LID+G   F H  ++++  V
Sbjct: 154 PHNVMI---------DHEL-----------------RKLRLIDWGLAEFYHPGKEYNVRV 187
Query: 280 STRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPL 337
           ++R+++ PE+++ L  ++Y  D+WS+GC+   +    E  F  H+N + L  + +VLG  
Sbjct: 188 ASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTD 247
Query: 338 PHHMV-----IRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
             ++      I  D + E    R +R  W                L+  N   QH+   +
Sbjct: 248 GLNVYLNKYRIELDPQLEALVGRHSRKPW----------------LKFMNADNQHL--VS 289
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + ID L  LLRYD  ERL A EA+ HP+F +
Sbjct: 290 PEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 321

>pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In Complex With Two Beta Peptides Mimicking The Architecture Of The Tetrameric Protein Kinase Ck2 Holoenzyme. Length = 332

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 67/272 (24%)
Query: 162 FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK 221
           F+Y N+    F+ L P+L D+             +R    +LL+++ + H   ++H D+K
Sbjct: 108 FEYVNNTD--FKVLYPTLTDYD------------IRYYIYELLKALDYCHSQGIMHRDVK 153
Query: 222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVV 279
           P N+++         D++                    ++LID+G   F H  ++++  V
Sbjct: 154 PHNVMI---------DHEL-----------------RKLRLIDWGLAEFYHPGKEYNVRV 187
Query: 280 STRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGP- 336
           ++R+++ PE+++ L  ++Y  D+WS+GC+   +    E  F  H+N + L  + +VLG  
Sbjct: 188 ASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTD 247
Query: 337 ----LPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
                 +   I  D + E    R +R  W                L+  N   QH+   +
Sbjct: 248 GLNVYLNKYRIELDPQLEALVGRHSRKPW----------------LKFMNADNQHL--VS 289
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + ID L  LLRYD  ERL A EA+ HP+F +
Sbjct: 290 PEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 321

>pdb|2PVH|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine Derivatives As Potent Inhibitors Of Protein Kinase Ck2 Length = 352

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 124/272 (45%), Gaps = 67/272 (24%)
Query: 162 FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK 221
           F+Y N+    F+ L P+L D+             +R    +LL+++ + H   ++H D+K
Sbjct: 128 FEYVNNTD--FKVLYPTLTDYD------------IRYYIYELLKALDYCHSQGIMHRDVK 173
Query: 222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVV 279
           P N+++         D++                    ++LID+G   F H  ++++  V
Sbjct: 174 PHNVMI---------DHEL-----------------RKLRLIDWGLAEFYHPGKEYNVRV 207
Query: 280 STRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLG-- 335
           ++R+++ PE+++ L  ++Y  D+WS+GC+   +    E  F  H+N + L  + +VLG  
Sbjct: 208 ASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTD 267
Query: 336 ---PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
                 +   I  D + E    R +R  W                L+  N   QH+   +
Sbjct: 268 GLNAYLNKYRIELDPQLEALVGRHSRKPW----------------LKFMNADNQHL--VS 309
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + ID L  LLRYD  ERL A EA+ HP+F +
Sbjct: 310 PEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 341

>pdb|4DGM|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The Inhibitor Apigenin Length = 326

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 85/352 (24%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           Y ++ K+G G + +V E  +    E     I       ++    EI +LQ L    +GG 
Sbjct: 33  YEVVRKVGRGKYSEVFEGINVNNNE--KCIIKILKPVKKKKIKREIKILQNL----MGGP 86
Query: 154 RCVQIRNW------------FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGR 201
             V++ +             F+Y N+    F+ L P+L D+             +R    
Sbjct: 87  NIVKLLDIVRDQHSKTPSLIFEYVNNTD--FKVLYPTLTDYD------------IRYYIY 132
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           +LL+++ + H   ++H D+KP N+++         D++                    ++
Sbjct: 133 ELLKALDYCHSQGIMHRDVKPHNVMI---------DHEL-----------------RKLR 166
Query: 262 LIDFGSTTFEH--QDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEAL 317
           LID+G   F H  ++++  V++R+++ PE+++ L  ++Y  D+WS+GC+   +    E  
Sbjct: 167 LIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPF 226
Query: 318 FQTHENLEHLAMMERVLGPLPHHMV-----IRADRRAEKYFRRGARLDWPDGATSRDSMR 372
           F  H+N + L  + +VLG    ++      I  D + E    R +R  W           
Sbjct: 227 FYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALVGRHSRKPW----------- 275
Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                L+  N   QH+   + + ID L  LLRYD  ERL A EA+ HP+F +
Sbjct: 276 -----LKFMNADNQHL--VSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|4ANM|A Chain A, Complex Of Ck2 With A Cdc7 Inhibitor Length = 335

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 67/272 (24%)
Query: 162 FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK 221
           F+Y N+    F+ L P+L D+             +R    +LL+++ + H   ++H D+K
Sbjct: 109 FEYVNNTD--FKVLYPTLTDYD------------IRYYIYELLKALDYCHSQGIMHRDVK 154
Query: 222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVV 279
           P N+++         D++                    ++LID+G   F H  ++++  V
Sbjct: 155 PHNVMI---------DHEL-----------------RKLRLIDWGLAEFYHPGKEYNVRV 188
Query: 280 STRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPL 337
           ++R+++ PE+++ L  ++Y  D+WS+GC+   +    E  F  H+N + L  + +VLG  
Sbjct: 189 ASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTD 248
Query: 338 PHHMV-----IRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
             ++      I  D + E    R +R  W                L+  N   QH+   +
Sbjct: 249 GLNVYLNKYRIELDPQLEALVGRHSRKPW----------------LKFMNADNQHL--VS 290
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + ID L  LLRYD  ERL A EA+ HP+F +
Sbjct: 291 PEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 322

>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase Ck2 (Alpha-Subunit) And Mg-Amppnp Length = 327

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 67/272 (24%)
Query: 162 FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK 221
           F+Y N+    F+ L P+L D+             +R    +LL+++ + H   ++H D+K
Sbjct: 107 FEYVNNTD--FKVLYPTLTDYD------------IRYYIYELLKALDYCHSQGIMHRDVK 152
Query: 222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVV 279
           P N+++         D++                    ++LID+G   F H  ++++  V
Sbjct: 153 PHNVMI---------DHEL-----------------RKLRLIDWGLAEFYHPGKEYNVRV 186
Query: 280 STRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPL 337
           ++R+++ PE+++ L  ++Y  D+WS+GC+   +    E  F  H+N + L  + +VLG  
Sbjct: 187 ASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTD 246
Query: 338 PHHMV-----IRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
             ++      I  D + E    R +R  W                L+  N   QH+   +
Sbjct: 247 GLNVYLNKYRIELDPQLEALVGRHSRKPW----------------LKFMNADNQHL--VS 288
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + ID L  LLRYD  ERL A EA+ HP+F +
Sbjct: 289 PEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 141/349 (40%), Gaps = 92/349 (26%)
Query: 96  ILSK-MGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREA-----AMIEIDVLQRL 145
           I+SK +G G  G+V   F+ +  + VAI+I+     +I   REA        EI++L++L
Sbjct: 152 IMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKL 211
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
               I     ++I+N+FD  ++  ++    G  L+D +  N  +       +    Q+L 
Sbjct: 212 NHPCI-----IKIKNFFDAEDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLL 264
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V ++HE  +IH DLKPEN+LL S E                        +   IK+ DF
Sbjct: 265 AVQYLHENGIIHRDLKPENVLLSSQE------------------------EDCLIKITDF 300
Query: 266 GSTTF--EHQDHSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALFQT 320
           G +    E      +  T  Y APEV++ +   G+N   D WS+G IL    SG   F  
Sbjct: 301 GHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE 360
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
           H                   + ++    + KY                            
Sbjct: 361 HRT----------------QVSLKDQITSGKY---------------------------- 376
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT-RDVRR 428
            N I +     +   +DL++ LL  DP  R    EALRHP+    D++R
Sbjct: 377 -NFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKR 424

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 141/349 (40%), Gaps = 92/349 (26%)
Query: 96  ILSK-MGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREA-----AMIEIDVLQRL 145
           I+SK +G G  G+V   F+ +  + VAI+I+     +I   REA        EI++L++L
Sbjct: 138 IMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKL 197
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
               I     ++I+N+FD  ++  ++    G  L+D +  N  +       +    Q+L 
Sbjct: 198 NHPCI-----IKIKNFFDAEDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLL 250
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V ++HE  +IH DLKPEN+LL S E                        +   IK+ DF
Sbjct: 251 AVQYLHENGIIHRDLKPENVLLSSQE------------------------EDCLIKITDF 286
Query: 266 GSTTF--EHQDHSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALFQT 320
           G +    E      +  T  Y APEV++ +   G+N   D WS+G IL    SG   F  
Sbjct: 287 GHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE 346
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
           H                   + ++    + KY                            
Sbjct: 347 HRT----------------QVSLKDQITSGKY---------------------------- 362
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT-RDVRR 428
            N I +     +   +DL++ LL  DP  R    EALRHP+    D++R
Sbjct: 363 -NFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKR 410

>pdb|1M2P|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro- AnthraquinoneCK2 KINASE COMPLEX Length = 325

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 67/272 (24%)
Query: 162 FDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK 221
           F+Y N+    F+ L P+L D+             +R    +LL+++ + H   ++H D+K
Sbjct: 107 FEYVNNTD--FKVLYPTLTDYD------------IRYYIYELLKALDYCHSQGIMHRDVK 152
Query: 222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH--QDHSYVV 279
           P N+++         D++                    ++LID+G   F H  ++++  V
Sbjct: 153 PHNVMI---------DHEL-----------------RKLRLIDWGLAEFYHPGKEYNVRV 186
Query: 280 STRHYRAPEVILGL-GWNYPCDLWSVGCILVELC-SGEALFQTHENLEHLAMMERVLGPL 337
           ++R+++ PE+++ L  ++Y  D+WS+GC+   +    E  F  H+N + L  + +VLG  
Sbjct: 187 ASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTD 246
Query: 338 PHHMV-----IRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
             ++      I  D + E    R +R  W                L+  N   QH+   +
Sbjct: 247 GLNVYLNKYRIELDPQLEALVGRHSRKPW----------------LKFMNADNQHL--VS 288
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
            + ID L  LLRYD  ERL A EA+ HP+F +
Sbjct: 289 PEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 144/343 (41%), Gaps = 88/343 (25%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR 147
           + L+  + + S++G G    V  C     ++  A+K+++     ++    EI VL RL+ 
Sbjct: 49  DALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVD-KKIVRTEIGVLLRLSH 107
Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSF--PIDLVRELGRQLL 204
            +I     ++++  F+    I +V E + G  L+D + +  Y S     D V+    Q+L
Sbjct: 108 PNI-----IKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVK----QIL 158
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           E+VA++HE  ++H DLKPEN+L  +      PD                    + +K+ D
Sbjct: 159 EAVAYLHENGIVHRDLKPENLLYATP----APD--------------------APLKIAD 194
Query: 265 FG-STTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL-VELCSGEALFQTH 321
           FG S   EHQ     V  T  Y APE++ G  +    D+WSVG I  + LC  E  +   
Sbjct: 195 FGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFY--- 251
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKY-FRRGARLDWPDGATSRDSMRAVWKLLRL 380
                                   D R +++ FRR    ++                   
Sbjct: 252 ------------------------DERGDQFMFRRILNCEY------------------- 268
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
              I    D  + +  DL++ L+  DP +RL   +AL+HP+ T
Sbjct: 269 -YFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVT 310

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDV-LQRLARHDI 150
           Y+I+  +GEG+FG+V   +     + VA+KI+  + + K      IE ++   RL RH  
Sbjct: 16  YQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH-- 73
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                +++ +    ++ I +V E  G  L+D++ +    S      R   +Q++ +V + 
Sbjct: 74  --PHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSE--QEARRFFQQIISAVEYC 129
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  +++H DLKPEN+LL     VK+ D+  LS    DG++ K                  
Sbjct: 130 HRHKIVHRDLKPENLLLDEHLNVKIADFG-LSNIMTDGNFLKT----------------- 171
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCIL-VELC 312
                     + +Y APEVI G  +  P  D+WS G IL V LC
Sbjct: 172 -------SCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLC 208

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDV-LQRLARHDI 150
           Y+I+  +GEG+FG+V   +     + VA+KI+  + + K      IE ++   RL RH  
Sbjct: 6   YQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH-- 63
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                +++ +    ++ I +V E  G  L+D++ +    S      R   +Q++ +V + 
Sbjct: 64  --PHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSE--QEARRFFQQIISAVEYC 119
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  +++H DLKPEN+LL     VK+ D+  LS    DG++ K                  
Sbjct: 120 HRHKIVHRDLKPENLLLDEHLNVKIADFG-LSNIMTDGNFLKT----------------- 161
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCIL-VELC 312
                     + +Y APEVI G  +  P  D+WS G IL V LC
Sbjct: 162 -------SCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLC 198

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDV-LQRLARHDI 150
           Y+I+  +GEG+FG+V   +     + VA+KI+  + + K      IE ++   RL RH  
Sbjct: 10  YQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH-- 67
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                +++ +    ++ I +V E  G  L+D++ +    S      R   +Q++ +V + 
Sbjct: 68  --PHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSE--QEARRFFQQIISAVEYC 123
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  +++H DLKPEN+LL     VK+ D+  LS    DG++ K                  
Sbjct: 124 HRHKIVHRDLKPENLLLDEHLNVKIADFG-LSNIMTDGNFLKT----------------- 165
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCIL-VELC 312
                     + +Y APEVI G  +  P  D+WS G IL V LC
Sbjct: 166 -------SCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLC 202

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 36/224 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDV-LQRLARHDI 150
           Y+I+  +GEG+FG+V   +     + VA+KI+  + + K      IE ++   RL RH  
Sbjct: 15  YQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH-- 72
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                +++ +    ++ I +V E  G  L+D++ +    S      R   +Q++ +V + 
Sbjct: 73  --PHIIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSE--QEARRFFQQIISAVEYC 128
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  +++H DLKPEN+LL     VK+ D+  LS    DG++ K                  
Sbjct: 129 HRHKIVHRDLKPENLLLDEHLNVKIADFG-LSNIMTDGNFLKT----------------- 170
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCIL-VELC 312
                     + +Y APEVI G  +  P  D+WS G IL V LC
Sbjct: 171 -------SCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLC 207

>pdb|3OFM|A Chain A, Structure Of A Human Ck2alpha Prime, The Paralog Isoform Of The Catalytic Subunit Of Protein Kinase Ck2 From Homo Sapiens Length = 350

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 153/349 (43%), Gaps = 63/349 (18%)
Query: 94  YRILSKMGEGTFGQVVECFD---NEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI 150
           Y+++ K+G G + +V E  +   NE+  +  +K V+     RE  ++E         +  
Sbjct: 40  YQLVRKLGRGKYSEVFEAINITNNERVVVKILKPVKKKKIKREVKILE---------NLR 90
Query: 151 GGTRCVQIRNWFD--YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           GGT  +++ +           +VFE +  +  DF  K  Y+      +R    +LL+++ 
Sbjct: 91  GGTNIIKLIDTVKDPVSKTPALVFEYINNT--DF--KQLYQILTDFDIRFYMYELLKALD 146
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           + H   ++H D+KP N+++                            +   ++LID+G  
Sbjct: 147 YCHSKGIMHRDVKPHNVMIDH--------------------------QQKKLRLIDWGLA 180
Query: 269 TFEH--QDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENL 324
            F H  Q+++  V++R+++ PE+++    ++Y  D+WS+GC+L  +    E  F   +N 
Sbjct: 181 EFYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRREPFFHGQDNY 240
Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           + L  + +VLG    +  ++         +    LD           R  W+     N I
Sbjct: 241 DQLVRIAKVLGTEELYGYLK---------KYHIDLDPHFNDILGQHSRKRWE-----NFI 286
Query: 385 MQHVDHSAG-DLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
                H    + +DLL  LLRYD  +RL A+EA+ HP+F   V+    P
Sbjct: 287 HSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPVVKEQSQP 335

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 140/354 (39%), Gaps = 90/354 (25%)
Query: 86  IGENLTPR--YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-EAAMIEIDVL 142
           +  +L P   + I+ ++G+G FG+V +  + E   L A K++ + ++   E  M+EID+L
Sbjct: 29  VTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDIL 88
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                 +I     V++ + F Y N++ I+ E       D +     R      ++ + +Q
Sbjct: 89  ASCDHPNI-----VKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQ 143
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
            L+++ ++H+ ++IH DLK  NIL                  + DG           IKL
Sbjct: 144 TLDALNYLHDNKIIHRDLKAGNILF-----------------TLDGD----------IKL 176
Query: 263 IDFGST---TFEHQDHSYVVSTRHYRAPEVILGLG-----WNYPCDLWSVGCILVELCSG 314
            DFG +   T   Q     + T ++ APEV++        ++Y  D+WS+G  L+E+   
Sbjct: 177 ADFGVSAKNTRXIQRRDXFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEI 236
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
           E                      PHH +                          + MR +
Sbjct: 237 EP---------------------PHHEL--------------------------NPMRVL 249
Query: 375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
            K+ +     +      + +  D L+  L  +   R    + L+HPF T D  +
Sbjct: 250 LKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVDSNK 303

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 140/354 (39%), Gaps = 90/354 (25%)
Query: 86  IGENLTPR--YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-EAAMIEIDVL 142
           +  +L P   + I+ ++G+G FG+V +  + E   L A K++ + ++   E  M+EID+L
Sbjct: 29  VTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDIL 88
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                 +I     V++ + F Y N++ I+ E       D +     R      ++ + +Q
Sbjct: 89  ASCDHPNI-----VKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQ 143
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
            L+++ ++H+ ++IH DLK  NIL                  + DG           IKL
Sbjct: 144 TLDALNYLHDNKIIHRDLKAGNILF-----------------TLDGD----------IKL 176
Query: 263 IDFGST---TFEHQDHSYVVSTRHYRAPEVILGLG-----WNYPCDLWSVGCILVELCSG 314
            DFG +   T   Q     + T ++ APEV++        ++Y  D+WS+G  L+E+   
Sbjct: 177 ADFGVSAKNTRXIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEI 236
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
           E                      PHH +                          + MR +
Sbjct: 237 EP---------------------PHHEL--------------------------NPMRVL 249
Query: 375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
            K+ +     +      + +  D L+  L  +   R    + L+HPF T D  +
Sbjct: 250 LKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVDSNK 303

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 140/354 (39%), Gaps = 90/354 (25%)
Query: 86  IGENLTPR--YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-EAAMIEIDVL 142
           +  +L P   + I+ ++G+G FG+V +  + E   L A K++ + ++   E  M+EID+L
Sbjct: 29  VTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDIL 88
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                 +I     V++ + F Y N++ I+ E       D +     R      ++ + +Q
Sbjct: 89  ASCDHPNI-----VKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQ 143
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
            L+++ ++H+ ++IH DLK  NIL                  + DG           IKL
Sbjct: 144 TLDALNYLHDNKIIHRDLKAGNILF-----------------TLDGD----------IKL 176
Query: 263 IDFGST---TFEHQDHSYVVSTRHYRAPEVILGLG-----WNYPCDLWSVGCILVELCSG 314
            DFG +   T   Q     + T ++ APEV++        ++Y  D+WS+G  L+E+   
Sbjct: 177 ADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEI 236
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
           E                      PHH +                          + MR +
Sbjct: 237 EP---------------------PHHEL--------------------------NPMRVL 249
Query: 375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
            K+ +     +      + +  D L+  L  +   R    + L+HPF T D  +
Sbjct: 250 LKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVDSNK 303

>pdb|3E3B|X Chain X, Crystal Structure Of Catalytic Subunit Of Human Protein Kinase Ck2alpha Prime With A Potent Indazole-Derivative Inhibitor Length = 339

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 150/339 (44%), Gaps = 63/339 (18%)
Query: 94  YRILSKMGEGTFGQVVECFD---NEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI 150
           Y+++ K+G G + +V E  +   NE+  +  +K V+     RE  ++E         +  
Sbjct: 45  YQLVRKLGRGKYSEVFEAINITNNERVVVKILKPVKKKKIKREVKILE---------NLR 95
Query: 151 GGTRCVQIRNWFD--YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           GGT  +++ +           +VFE +  +  DF  K  Y+      +R    +LL+++ 
Sbjct: 96  GGTNIIKLIDTVKDPVSKTPALVFEYINNT--DF--KQLYQILTDFDIRFYMYELLKALD 151
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           + H   ++H D+KP N+++                            +   ++LID+G  
Sbjct: 152 YCHSKGIMHRDVKPHNVMIDH--------------------------QQKKLRLIDWGLA 185
Query: 269 TFEH--QDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELC-SGEALFQTHENL 324
            F H  Q+++  V++R+++ PE+++    ++Y  D+WS+GC+L  +    E  F   +N 
Sbjct: 186 EFYHPAQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRREPFFHGQDNY 245
Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           + L  + +VLG    +  ++         +    LD           R  W+     N I
Sbjct: 246 DQLVRIAKVLGTEELYGYLK---------KYHIDLDPHFNDILGQHSRKRWE-----NFI 291
Query: 385 MQHVDHSAG-DLIDLLQGLLRYDPAERLKAREALRHPFF 422
                H    + +DLL  LLRYD  +RL A+EA+ HP+F
Sbjct: 292 HSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYF 330

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 154/376 (40%), Gaps = 71/376 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV-RSINKYREAAMI--EIDVLQRLARHDI 150
           Y I   +G G++G V   +D    + VAIK V R      +   I  EI +L RL    I
Sbjct: 30  YEIKHLIGRGSYGYVYLAYDKNANKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYI 89
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDL----VRELGRQLLES 206
                + I       + + IV E     L    +       PI L    V+ +   LL  
Sbjct: 90  IRLHDLIIPEDLLKFDELYIVLEIADSDLKKLFKT------PIFLTEQHVKTILYNLLLG 143
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR---SSKDGSYFKNLPKSSAIKLI 263
             F+HE  +IH DLKP N LL     VK+ D+  L+R   S KD     +L +    +  
Sbjct: 144 EKFIHESGIIHRDLKPANCLLNQDCSVKICDFG-LARTINSDKDIHIVNDLEEKEENEEP 202
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCS-------- 313
              +   + Q  S+VV TR YRAPE+IL L  NY    D+WS GCI  EL +        
Sbjct: 203 GPHNKNLKKQLTSHVV-TRWYRAPELIL-LQENYTNSIDIWSTGCIFAELLNMMKSHINN 260
Query: 314 ---------GEALF---------QTHE--NLEHLAMMERVLGPLPHH-MVIRADRRAEKY 352
                    G + F         + HE  N + L ++  V+G  P   +     +   KY
Sbjct: 261 PTNRFPLFPGSSCFPLSPDHNSKKVHEKSNRDQLNIIFNVIGTPPEEDLKCITKQEVIKY 320
Query: 353 FRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLK 412
            +     D  D +    S+                    + + IDLL+ +LR++  +R+ 
Sbjct: 321 IKLFPTRDGIDLSKKYSSI--------------------SKEGIDLLESMLRFNAQKRIT 360
Query: 413 AREALRHPFFTRDVRR 428
             +AL HP+  +DVR+
Sbjct: 361 IDKALSHPYL-KDVRK 375

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGVFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 143/364 (39%), Gaps = 98/364 (26%)
Query: 80  GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV----------RSIN 129
            H      EN  P+      +G G    V  C      +  A+KI+            + 
Sbjct: 9   SHSTHGFYENYEPK----EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQ 64
Query: 130 KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSY 188
           + REA + E+D+L++++ H       +Q+++ ++      +VF+ +    L+D+L +   
Sbjct: 65  ELREATLKEVDILRKVSGH----PNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKV- 119
Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
            +      R++ R LLE +  +H+L ++H DLKPENILL     +K+ D+ F  +     
Sbjct: 120 -TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ----- 173
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVI-LGLGWNYP-----CDLW 302
                         +D G    E      V  T  Y APE+I   +  N+P      D+W
Sbjct: 174 --------------LDPGEKLRE------VCGTPSYLAPEIIECSMNDNHPGYGKEVDMW 213
Query: 303 SVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP 362
           S G I+  L +G   F   + +  L M+                      ++ G+  +W 
Sbjct: 214 STGVIMYTLLAGSPPFWHRKQMLMLRMI------------------MSGNYQFGSP-EWD 254
Query: 363 DGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           D +   D+++                        DL+   L   P +R  A EAL HPFF
Sbjct: 255 DYS---DTVK------------------------DLVSRFLVVQPQKRYTAEEALAHPFF 287
Query: 423 TRDV 426
            + V
Sbjct: 288 QQYV 291

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 6   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 65
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 66  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 118
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 119 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 155
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 156 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 212
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 213 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 272
Query: 375 W 375
           W
Sbjct: 273 W 273

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGKFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 6   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 65
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 66  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 118
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 119 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 155
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 156 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 212
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 213 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 272
Query: 375 W 375
           W
Sbjct: 273 W 273

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 131/338 (38%), Gaps = 82/338 (24%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDIG 151
           Y +   +G+G F  V  C + E  +  A+KIV  + K+  +  +  + L+R A   H + 
Sbjct: 26  YELCEVIGKGAFSVVRRCINRETGQQFAVKIV-DVAKFTSSPGLSTEDLKREASICHMLK 84
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID--LVRELGRQLLESVA 208
               V++   +     + +VFE + G  L   + K +   F     +     RQ+LE++ 
Sbjct: 85  HPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALR 144
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           + H+  +IH D+KPEN+LL S E                         S+ +KL DFG  
Sbjct: 145 YCHDNNIIHRDVKPENVLLASKE------------------------NSAPVKLGDFG-V 179
Query: 269 TFEHQDHSYV----VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
             +  +   V    V T H+ APEV+    +  P D+W  G IL  L S           
Sbjct: 180 AIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLS----------- 228
Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
                     G LP +                       G   R     +    ++    
Sbjct: 229 ----------GCLPFY-----------------------GTKERLFEGIIKGKYKMNPRQ 255
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             H+  SA DL+   + +L  DPAER+   EAL HP+ 
Sbjct: 256 WSHISESAKDLV---RRMLMLDPAERITVYEALNHPWL 290

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 141/354 (39%), Gaps = 98/354 (27%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV----------RSINKYREAAMI 137
           EN  P+      +G G    V  C      +  A+KI+            + + REA + 
Sbjct: 4   ENYEPK----EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLK 59
Query: 138 EIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLV 196
           E+D+L++++ H       +Q+++ ++      +VF+ +    L+D+L +    +      
Sbjct: 60  EVDILRKVSGH----PNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKV--TLSEKET 113
Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
           R++ R LLE +  +H+L ++H DLKPENILL     +K+ D+ F  +             
Sbjct: 114 RKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ------------- 160
Query: 257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVI-LGLGWNYP-----CDLWSVGCILVE 310
                 +D G    E      V  T  Y APE+I   +  N+P      D+WS G I+  
Sbjct: 161 ------LDPGEKLRE------VCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYT 208
Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           L +G   F   + +  L M+                      ++ G+  +W D +   D+
Sbjct: 209 LLAGSPPFWHRKQMLMLRMI------------------MSGNYQFGSP-EWDDYS---DT 246
Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           ++                        DL+   L   P +R  A EAL HPFF +
Sbjct: 247 VK------------------------DLVSRFLVVQPQKRYTAEEALAHPFFQQ 276

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILIGELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 122/301 (40%), Gaps = 46/301 (15%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 119
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                       +N+PK   
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLD----------------------RNVPKPR- 156
Query: 260 IKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           IK+IDFG     H+     +   +  T  + APE++         D+WS+G I   L SG
Sbjct: 157 IKIIDFG---LAHKIDFGNEFKNIFGTPAFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213
Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            + F      E LA +  V               A+ + RR    D     T +DS++  
Sbjct: 214 ASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP 273
Query: 375 W 375
           W
Sbjct: 274 W 274

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 143/364 (39%), Gaps = 98/364 (26%)
Query: 80  GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV----------RSIN 129
            H      EN  P+      +G G    V  C      +  A+KI+            + 
Sbjct: 9   SHSTHGFYENYEPK----EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQ 64
Query: 130 KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSY 188
           + REA + E+D+L++++ H       +Q+++ ++      +VF+ +    L+D+L +   
Sbjct: 65  ELREATLKEVDILRKVSGH----PNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKV- 119
Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
            +      R++ R LLE +  +H+L ++H DLKPENILL     +K+ D+ F  +     
Sbjct: 120 -TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQ----- 173
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVI-LGLGWNYP-----CDLW 302
                         +D G      +    V  T  Y APE+I   +  N+P      D+W
Sbjct: 174 --------------LDPG------EKLRSVCGTPSYLAPEIIECSMNDNHPGYGKEVDMW 213
Query: 303 SVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP 362
           S G I+  L +G   F   + +  L M+                      ++ G+  +W 
Sbjct: 214 STGVIMYTLLAGSPPFWHRKQMLMLRMI------------------MSGNYQFGSP-EWD 254
Query: 363 DGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           D +   D+++                        DL+   L   P +R  A EAL HPFF
Sbjct: 255 DYS---DTVK------------------------DLVSRFLVVQPQKRYTAEEALAHPFF 287
Query: 423 TRDV 426
            + V
Sbjct: 288 QQYV 291

>pdb|3RGF|A Chain A, Crystal Structure Of Human Cdk8CYCC Length = 405

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 47/250 (18%)
Query: 190 SFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS 249
             P  +V+ L  Q+L+ + ++H   ++H DLKP NIL++                     
Sbjct: 124 QLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEG------------------ 165
Query: 250 YFKNLPKSSAIKLID------FGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLW 302
                P+   +K+ D      F S      D   VV T  YRAPE++LG   +    D+W
Sbjct: 166 -----PERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIW 220
Query: 303 SVGCILVELCSGEALFQTHE------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRG 356
           ++GCI  EL + E +F   +      N  H   ++R+       M   AD+  E   +  
Sbjct: 221 AIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNV----MGFPADKDWEDIKKM- 275
Query: 357 ARLDWPDGAT-SRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKARE 415
                P+ +T  +D  R  +    L   + +H          LLQ LL  DP +R+ + +
Sbjct: 276 -----PEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQ 330
Query: 416 ALRHPFFTRD 425
           A++ P+F  D
Sbjct: 331 AMQDPYFLED 340

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 43/226 (19%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-----EAAMIEIDVLQRLARHDIGGT 153
           K+G G FG V      E++     +++++INK R     E    EI+VL+ L   +I   
Sbjct: 29  KLGSGAFGDVHLV---EERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNI--- 82
Query: 154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID--LVRELGRQLLESVAFM 210
             ++I   F+  +++ IV E   G  L + +     R   +    V EL +Q++ ++A+ 
Sbjct: 83  --IKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYF 140
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-STT 269
           H   ++H DLKPENIL                        F++    S IK+IDFG +  
Sbjct: 141 HSQHVVHKDLKPENIL------------------------FQDTSPHSPIKIIDFGLAEL 176
Query: 270 FEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           F+  +HS     T  Y APEV       + CD+WS G ++  L +G
Sbjct: 177 FKSDEHSTNAAGTALYMAPEV-FKRDVTFKCDIWSAGVVMYFLLTG 221

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 127/306 (41%), Gaps = 60/306 (19%)
Query: 51  GMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRI-------LSKMGEG 103
           G+   A + M +    R+GSP      ++     A      P++R+       L  +G+G
Sbjct: 109 GLKKQAAAEMDF----RSGSPSDNSGAEEMEVSLA-----KPKHRVTMNEFEYLKLLGKG 159
Query: 104 TFGQVVECFDNEKKELVAIKIVRS--INKYREAA--MIEIDVLQRLARHDIGGTRCVQIR 159
           TFG+V+   +       A+KI++   I    E A  + E  VLQ  +RH         ++
Sbjct: 160 TFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN-SRHPF----LTALK 214
Query: 160 NWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH-ELRLIH 217
             F   + +C V E   G  L+  L +   R F  D  R  G +++ ++ ++H E  +++
Sbjct: 215 YSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVVY 272
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            DLK EN++L    ++K+ D+       KDG+  K                         
Sbjct: 273 RDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTF----------------------- 309
Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLEHLAMME---- 331
              T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L  L +ME    
Sbjct: 310 -CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRF 368
Query: 332 -RVLGP 336
            R LGP
Sbjct: 369 PRTLGP 374

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 32/223 (14%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + +L K+GEG++G V +    E  ++VAIK V   +  +E  + EI ++Q+         
Sbjct: 31  FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEI-IKEISIMQQC-----DSP 84
Query: 154 RCVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
             V+    +     + IV E  G  S+ D +R  + ++   D +  + +  L+ + ++H 
Sbjct: 85  HVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEYLHF 143
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
           +R IH D+K  NILL +  + K+ D+                           G  T   
Sbjct: 144 MRKIHRDIKAGNILLNTEGHAKLADFGVA------------------------GQLTDXM 179
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
              + V+ T  + APEVI  +G+N   D+WS+G   +E+  G+
Sbjct: 180 AKRNXVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGK 222

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 44/294 (14%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEIDVLQRLA 146
           Y I  ++G G F  V +C +       A K ++            RE    E+ +L+++ 
Sbjct: 14  YDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVL 73
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
            H++     + + + ++ R  + ++ E + G  L+DFL +    S   +      +Q+L+
Sbjct: 74  HHNV-----ITLHDVYENRTDVVLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILD 126
Query: 206 SVAFMHELRLIHTDLKPENILLVSAE----YVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
            V ++H  ++ H DLKPENI+L+       ++K+ D+  L+   +DG  FKN+       
Sbjct: 127 GVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG-LAHEIEDGVEFKNI------- 178
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
              FG              T  + APE++         D+WS+G I   L SG + F   
Sbjct: 179 ---FG--------------TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
              E LA +  V          +    A+ + R+    +     T ++++R  W
Sbjct: 222 TKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPW 275

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 44/294 (14%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEIDVLQRLA 146
           Y I  ++G G F  V +C +       A K ++            RE    E+ +L+++ 
Sbjct: 14  YDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVL 73
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
            H++     + + + ++ R  + ++ E + G  L+DFL +    S   +      +Q+L+
Sbjct: 74  HHNV-----ITLHDVYENRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILD 126
Query: 206 SVAFMHELRLIHTDLKPENILLVSAE----YVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
            V ++H  ++ H DLKPENI+L+       ++K+ D+  L+   +DG  FKN+       
Sbjct: 127 GVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG-LAHEIEDGVEFKNI------- 178
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
              FG              T  + APE++         D+WS+G I   L SG + F   
Sbjct: 179 ---FG--------------TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
              E LA +  V               A+ + R+    +     T ++++R  W
Sbjct: 222 TKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPW 275

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 44/294 (14%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEIDVLQRLA 146
           Y I  ++G G F  V +C +       A K ++            RE    E+ +L+++ 
Sbjct: 14  YDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVL 73
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
            H++     + + + ++ R  + ++ E + G  L+DFL +    S   +      +Q+L+
Sbjct: 74  HHNV-----ITLHDVYENRTDVVLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILD 126
Query: 206 SVAFMHELRLIHTDLKPENILLVSAE----YVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
            V ++H  ++ H DLKPENI+L+       ++K+ D+  L+   +DG  FKN+       
Sbjct: 127 GVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG-LAHEIEDGVEFKNI------- 178
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
              FG              T  + APE++         D+WS+G I   L SG + F   
Sbjct: 179 ---FG--------------TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
              E LA +  V          +    A+ + R+    +     T ++++R  W
Sbjct: 222 TKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPW 275

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 132/359 (36%), Gaps = 93/359 (25%)
Query: 81  HYVFAIGENLTPR------------YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI 128
           +YVF I +   P+            Y I  ++G G FG V    +       A K V + 
Sbjct: 134 NYVFDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP 193
Query: 129 NKY-REAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKN 186
           ++  +E    EI  +  L RH       V + + F+  N + +++E + G  L++ +  +
Sbjct: 194 HESDKETVRKEIQTMSVL-RHPT----LVNLHDAFEDDNEMVMIYEFMSGGELFEKV-AD 247
Query: 187 SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK 246
            +     D   E  RQ+ + +  MHE   +H DLKPENI+  +                 
Sbjct: 248 EHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTK---------------- 291
Query: 247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVS--TRHYRAPEVILGLGWNYPCDLWSV 304
                    +S+ +KLIDFG T       S  V+  T  + APEV  G    Y  D+WSV
Sbjct: 292 ---------RSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSV 342
Query: 305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDG 364
           G +   L SG + F    + E L                          R     DW   
Sbjct: 343 GVLSYILLSGLSPFGGENDDETL--------------------------RNVKSCDW--- 373
Query: 365 ATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                            N+        + D  D ++ LL  DP  R+   +AL HP+ T
Sbjct: 374 -----------------NMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLT 415

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 132/359 (36%), Gaps = 93/359 (25%)
Query: 81  HYVFAIGENLTPR------------YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI 128
           +YVF I +   P+            Y I  ++G G FG V    +       A K V + 
Sbjct: 28  NYVFDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP 87
Query: 129 NKY-REAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKN 186
           ++  +E    EI  +  L RH       V + + F+  N + +++E + G  L++ +  +
Sbjct: 88  HESDKETVRKEIQTMSVL-RHPT----LVNLHDAFEDDNEMVMIYEFMSGGELFEKV-AD 141
Query: 187 SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK 246
            +     D   E  RQ+ + +  MHE   +H DLKPENI+  +                 
Sbjct: 142 EHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTK---------------- 185
Query: 247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVS--TRHYRAPEVILGLGWNYPCDLWSV 304
                    +S+ +KLIDFG T       S  V+  T  + APEV  G    Y  D+WSV
Sbjct: 186 ---------RSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSV 236
Query: 305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDG 364
           G +   L SG + F    + E L                          R     DW   
Sbjct: 237 GVLSYILLSGLSPFGGENDDETL--------------------------RNVKSCDW--- 267
Query: 365 ATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                            N+        + D  D ++ LL  DP  R+   +AL HP+ T
Sbjct: 268 -----------------NMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLT 309

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 44/294 (14%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEIDVLQRLA 146
           Y I  ++G G F  V +C +       A K ++            RE    E+ +L+++ 
Sbjct: 14  YDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVL 73
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
            H++     + + + ++ R  + ++ E + G  L+DFL +    S   +      +Q+L+
Sbjct: 74  HHNV-----ITLHDVYENRTDVVLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILD 126
Query: 206 SVAFMHELRLIHTDLKPENILLVSAE----YVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
            V ++H  ++ H DLKPENI+L+       ++K+ D+  L+   +DG  FKN+       
Sbjct: 127 GVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG-LAHEIEDGVEFKNI------- 178
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
              FG              T  + APE++         D+WS+G I   L SG + F   
Sbjct: 179 ---FG--------------TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
              E LA +  V               A+ + R+    +     T ++++R  W
Sbjct: 222 TKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPW 275

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 44/294 (14%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEIDVLQRLA 146
           Y I  ++G G F  V +C +       A K ++            RE    E+ +L+++ 
Sbjct: 14  YDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVL 73
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
            H++     + + + ++ R  + ++ E + G  L+DFL +    S   +      +Q+L+
Sbjct: 74  HHNV-----ITLHDVYENRTDVVLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILD 126
Query: 206 SVAFMHELRLIHTDLKPENILLVSAE----YVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
            V ++H  ++ H DLKPENI+L+       ++K+ D+  L+   +DG  FKN+       
Sbjct: 127 GVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG-LAHEIEDGVEFKNI------- 178
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
              FG              T  + APE++         D+WS+G I   L SG + F   
Sbjct: 179 ---FG--------------TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
              E LA +  V               A+ + R+    +     T ++++R  W
Sbjct: 222 TKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPW 275

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 120/297 (40%), Gaps = 52/297 (17%)
Query: 69  GSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI 128
           G   +R +D + HY   +GE L          G G F  V +C      +  A K ++  
Sbjct: 1   GMSTFRQEDVEDHY--EMGEEL----------GSGQFAIVRKCRQKGTGKEYAAKFIKKR 48
Query: 129 -------NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLY 180
                     RE    E+++L+ + RH       + + + F+ +  + ++ E + G  L+
Sbjct: 49  RLSSSRRGVSREEIEREVNILREI-RH----PNIITLHDIFENKTDVVLILELVSGGELF 103
Query: 181 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF 240
           DFL +    S   D   +  +Q+L+ V ++H  R+ H DLKPENI+L+            
Sbjct: 104 DFLAEKE--SLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLD----------- 150
Query: 241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYP 298
                      KN+P +  IKLIDFG        + +  +  T  + APE++        
Sbjct: 151 -----------KNVP-NPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLE 198
Query: 299 CDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
            D+WS+G I   L SG + F      E L  +  V               A+ + RR
Sbjct: 199 ADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRR 255

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 140/348 (40%), Gaps = 88/348 (25%)
Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAM-IEIDVLQR 144
            E++   Y     +G G F +V+   D   ++LVAIK I +   + +E +M  EI VL +
Sbjct: 13  AEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHK 72
Query: 145 LARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGR-- 201
           +   +I     V + + ++   H+ ++ + + G  L+D + +  + +      R+  R  
Sbjct: 73  IKHPNI-----VALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYT-----ERDASRLI 122
Query: 202 -QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L++V ++H+L ++H DLKPEN+L                        + +L + S I
Sbjct: 123 FQVLDAVKYLHDLGIVHRDLKPENLL------------------------YYSLDEDSKI 158
Query: 261 KLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            + DFG +  E      S    T  Y APEV+    ++   D WS+G I   L  G   F
Sbjct: 159 MISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPF 218
Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
               + +   + E++L             +AE  F      D  D A             
Sbjct: 219 YDENDAK---LFEQIL-------------KAEYEFDSPYWDDISDSAK------------ 250
Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV 426
                             D ++ L+  DP +R    +AL+HP+   D 
Sbjct: 251 ------------------DFIRHLMEKDPEKRFTCEQALQHPWIAGDT 280

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 136/342 (39%), Gaps = 58/342 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-----------EIDVL 142
           Y +   +  G++G V    D+E   +   ++  +++  R   ++           EI +L
Sbjct: 24  YTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLL 83
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                 +I G R + +       + + +V E +   L   +        P   ++     
Sbjct: 84  NHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISP-QHIQYFMYH 142
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  +  +HE  ++H DL P NILL     + + D+      + D               
Sbjct: 143 ILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTADA-------------- 188
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTH 321
                      + ++ V+ R YRAPE+++   G+    D+WS GC++ E+ + +ALF+  
Sbjct: 189 -----------NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGS 237
Query: 322 ENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
                L  +  V+G P    +V+ +   A  Y R          + S    RA W     
Sbjct: 238 TFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLR---------NSLSNVPARA-W----- 282
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              ++   D  A   +DL+  +L ++P  R+   +ALRHP+F
Sbjct: 283 -TAVVPTADPVA---LDLIAKMLEFNPQRRISTEQALRHPYF 320

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 136/342 (39%), Gaps = 58/342 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-----------EIDVL 142
           Y +   +  G++G V    D+E   +   ++  +++  R   ++           EI +L
Sbjct: 24  YTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLL 83
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                 +I G R + +       + + +V E +   L   +        P   ++     
Sbjct: 84  NHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISP-QHIQYFMYH 142
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  +  +HE  ++H DL P NILL     + + D+      + D               
Sbjct: 143 ILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTADA-------------- 188
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTH 321
                      + ++ V+ R YRAPE+++   G+    D+WS GC++ E+ + +ALF+  
Sbjct: 189 -----------NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGS 237
Query: 322 ENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
                L  +  V+G P    +V+ +   A  Y R          + S    RA W     
Sbjct: 238 TFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLR---------NSLSNVPARA-W----- 282
Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              ++   D  A   +DL+  +L ++P  R+   +ALRHP+F
Sbjct: 283 -TAVVPTADPVA---LDLIAKMLEFNPQRRISTEQALRHPYF 320

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 121/290 (41%), Gaps = 56/290 (19%)
Query: 67  RTGSPPWRPDDKDGHYVFAIGENLTPRYRI-------LSKMGEGTFGQVVECFDNEKKEL 119
           R+GSP      ++     A      P++R+       L  +G+GTFG+V+   +      
Sbjct: 124 RSGSPSDNSGAEEMEVSLA-----KPKHRVTMNEFEYLKLLGKGTFGKVILVKEKATGRY 178
Query: 120 VAIKIVRS--INKYREAA--MIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL 175
            A+KI++   I    E A  + E  VLQ  +RH         ++  F   + +C V E  
Sbjct: 179 YAMKILKKEVIVAKDEVAHTLTENRVLQN-SRHPF----LTALKYSFQTHDRLCFVMEYA 233
Query: 176 -GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPENILLVSAEYV 233
            G  L+  L +   R F  D  R  G +++ ++ ++H E  +++ DLK EN++L    ++
Sbjct: 234 NGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHI 291
Query: 234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL 293
           K+ D+       KDG+  K                            T  Y APEV+   
Sbjct: 292 KITDFGLCKEGIKDGATMKTF------------------------CGTPEYLAPEVLEDN 327
Query: 294 GWNYPCDLWSVGCILVELCSGEALF--QTHENLEHLAMME-----RVLGP 336
            +    D W +G ++ E+  G   F  Q HE L  L +ME     R LGP
Sbjct: 328 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGP 377

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 38/238 (15%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 33  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 88
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 89  ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 145
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 146 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 181
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
             T  H   +    T +Y APEV+    ++  CD+WS+G I+  L  G   F ++  L
Sbjct: 182 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 239

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 140/348 (40%), Gaps = 88/348 (25%)
Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAM-IEIDVLQR 144
            E++   Y     +G G F +V+   D   ++LVAIK I +   + +E +M  EI VL +
Sbjct: 13  AEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHK 72
Query: 145 LARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGR-- 201
           +   +I     V + + ++   H+ ++ + + G  L+D + +  + +      R+  R  
Sbjct: 73  IKHPNI-----VALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYT-----ERDASRLI 122
Query: 202 -QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L++V ++H+L ++H DLKPEN+L                        + +L + S I
Sbjct: 123 FQVLDAVKYLHDLGIVHRDLKPENLL------------------------YYSLDEDSKI 158
Query: 261 KLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            + DFG +  E      S    T  Y APEV+    ++   D WS+G I   L  G   F
Sbjct: 159 MISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPF 218
Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
               + +   + E++L             +AE  F      D  D A             
Sbjct: 219 YDENDAK---LFEQIL-------------KAEYEFDSPYWDDISDSAK------------ 250
Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV 426
                             D ++ L+  DP +R    +AL+HP+   D 
Sbjct: 251 ------------------DFIRHLMEKDPEKRFTCEQALQHPWIAGDT 280

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAA--MIEIDVLQRLARHD 149
           +  L  +G+GTFG+V+   +       A+KI++   I    E A  + E  VLQ  +RH 
Sbjct: 12  FEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN-SRHP 70
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                   ++  F   + +C V E   G  L+  L +   R F  D  R  G +++ ++ 
Sbjct: 71  F----LTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALD 124
Query: 209 FMH-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
           ++H E  +++ DLK EN++L    ++K+ D+       KDG+  K               
Sbjct: 125 YLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXF------------- 171
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLE 325
                        T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L 
Sbjct: 172 -----------CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLF 220
Query: 326 HLAMME-----RVLGP 336
            L +ME     R LGP
Sbjct: 221 ELILMEEIRFPRTLGP 236

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAA--MIEIDVLQRLARHD 149
           +  L  +G+GTFG+V+   +       A+KI++   I    E A  + E  VLQ  +RH 
Sbjct: 11  FEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN-SRHP 69
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                   ++  F   + +C V E   G  L+  L +   R F  D  R  G +++ ++ 
Sbjct: 70  F----LTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALD 123
Query: 209 FMH-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
           ++H E  +++ DLK EN++L    ++K+ D+       KDG+  K               
Sbjct: 124 YLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXF------------- 170
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLE 325
                        T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L 
Sbjct: 171 -----------CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLF 219
Query: 326 HLAMME-----RVLGP 336
            L +ME     R LGP
Sbjct: 220 ELILMEEIRFPRTLGP 235

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 143/350 (40%), Gaps = 92/350 (26%)
Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAM-IEIDVLQR 144
            E++   Y     +G G F +V+   D   ++LVAIK I +   + +E +M  EI VL +
Sbjct: 13  AEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHK 72
Query: 145 LARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGR-- 201
           +   +I     V + + ++   H+ ++ + + G  L+D + +  + +      R+  R  
Sbjct: 73  IKHPNI-----VALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYT-----ERDASRLI 122
Query: 202 -QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L++V ++H+L ++H DLKPEN+L                        + +L + S I
Sbjct: 123 FQVLDAVKYLHDLGIVHRDLKPENLL------------------------YYSLDEDSKI 158
Query: 261 KLIDFGSTTFEHQDHSYVVSTR----HYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA 316
            + DFG +  E  D   V+ST      Y APEV+    ++   D WS+G I   L  G  
Sbjct: 159 MISDFGLSKME--DPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYP 216
Query: 317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK 376
            F    + +   + E++L             +AE  F      D  D A           
Sbjct: 217 PFYDENDAK---LFEQIL-------------KAEYEFDSPYWDDISDSAK---------- 250
Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV 426
                               D ++ L+  DP +R    +AL+HP+   D 
Sbjct: 251 --------------------DFIRHLMEKDPEKRFTCEQALQHPWIAGDT 280

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 128/297 (43%), Gaps = 44/297 (14%)
Query: 81  HYVFAIGENLTP-RYRILSKMGEGTFGQVV---ECFDNEKKELVAIKIVRSIN---KYRE 133
           H+V A  E   P  + +L  +G+G+FG+V    +    +   L A+K+++      + R 
Sbjct: 16  HHVKAGSEKADPSHFELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRV 75
Query: 134 AAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFP 192
              +E D+L      D+     V++   F     + ++ + L G  L+  L K     F 
Sbjct: 76  RTKMERDILA-----DVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVM--FT 128
Query: 193 IDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK 252
            + V+    +L   +  +H L +I+ DLKPENILL    ++K+ D+  LS+ + D     
Sbjct: 129 EEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFG-LSKEAID----- 182
Query: 253 NLPKSSAIKLIDFGSTTFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                              H+  +Y    T  Y APEV+   G ++  D WS G ++ E+
Sbjct: 183 -------------------HEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEM 223
Query: 312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR--GARL-DWPDGA 365
            +G   FQ  +  E + ++ +    +P  +   A       F+R    RL   PDGA
Sbjct: 224 LTGSLPFQGKDRKETMTLILKAKLGMPQFLSTEAQSLLRALFKRNPANRLGSGPDGA 280

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAA--MIEIDVLQRLARHD 149
           +  L  +G+GTFG+V+   +       A+KI++   I    E A  + E  VLQ  +RH 
Sbjct: 10  FEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN-SRHP 68
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                   ++  F   + +C V E   G  L+  L +   R F  D  R  G +++ ++ 
Sbjct: 69  F----LTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALD 122
Query: 209 FMH-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
           ++H E  +++ DLK EN++L    ++K+ D+       KDG+  K               
Sbjct: 123 YLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKXF------------- 169
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLE 325
                        T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L 
Sbjct: 170 -----------CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLF 218
Query: 326 HLAMME-----RVLGP 336
            L +ME     R LGP
Sbjct: 219 ELILMEEIRFPRTLGP 234

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 82/348 (23%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 23  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 78
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 79  ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 135
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 136 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 171
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL-VELCSGEALFQTHENLE 325
             T  H   +    T +Y APEV+    ++  CD+WS+G I+ + LC     +  H    
Sbjct: 172 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI 231
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
              M  R+                     R  + ++P+   S  S               
Sbjct: 232 SPGMKTRI---------------------RMGQYEFPNPEWSEVS--------------- 255
Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                   ++  L++ LL+ +P +R+   E + HP+  +  +    PL
Sbjct: 256 -------EEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPL 296

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 82/348 (23%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 24  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 79
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 80  ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 136
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 137 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 172
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL-VELCSGEALFQTHENLE 325
             T  H   +    T +Y APEV+    ++  CD+WS+G I+ + LC     +  H    
Sbjct: 173 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI 232
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
              M  R+                     R  + ++P+   S  S               
Sbjct: 233 SPGMKTRI---------------------RMGQYEFPNPEWSEVS--------------- 256
Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                   ++  L++ LL+ +P +R+   E + HP+  +  +    PL
Sbjct: 257 -------EEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPL 297

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 139/363 (38%), Gaps = 92/363 (25%)
Query: 69  GSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--R 126
            S  W+   +D   +F   E L          G G F +VV   +    +L A+K +  +
Sbjct: 9   SSSSWKKQAEDIKKIFEFKETL----------GTGAFSEVVLAEEKATGKLFAVKCIPKK 58
Query: 127 SINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRK 185
           ++     +   EI VL+++   +I     V + + ++  NH+ +V + + G  L+D + +
Sbjct: 59  ALKGKESSIENEIAVLRKIKHENI-----VALEDIYESPNHLYLVMQLVSGGELFDRIVE 113
Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
             +  +       L RQ+L++V ++H + ++H DLKPEN+L  S +              
Sbjct: 114 KGF--YTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQD-------------- 157
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWS 303
                     + S I + DFG +  E +    S    T  Y APEV+    ++   D WS
Sbjct: 158 ----------EESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWS 207
Query: 304 VGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPD 363
           +G I   L  G   F    + +   + E++L             +AE  F      D  D
Sbjct: 208 IGVIAYILLCGYPPFYDENDSK---LFEQIL-------------KAEYEFDSPYWDDISD 251
Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
            A                               D ++ L+  DP +R    +A RHP+  
Sbjct: 252 SAK------------------------------DFIRNLMEKDPNKRYTCEQAARHPWIA 281
Query: 424 RDV 426
            D 
Sbjct: 282 GDT 284

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 143/350 (40%), Gaps = 92/350 (26%)
Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAM-IEIDVLQR 144
            E++   Y     +G G F +V+   D   ++LVAIK I +   + +E +M  EI VL +
Sbjct: 13  AEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHK 72
Query: 145 LARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGR-- 201
           +   +I     V + + ++   H+ ++ + + G  L+D + +  + +      R+  R  
Sbjct: 73  IKHPNI-----VALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYT-----ERDASRLI 122
Query: 202 -QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+L++V ++H+L ++H DLKPEN+L                        + +L + S I
Sbjct: 123 FQVLDAVKYLHDLGIVHRDLKPENLL------------------------YYSLDEDSKI 158
Query: 261 KLIDFGSTTFEHQDHSYVVSTR----HYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA 316
            + DFG +  E  D   V+ST      Y APEV+    ++   D WS+G I   L  G  
Sbjct: 159 MISDFGLSKME--DPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYP 216
Query: 317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK 376
            F    + +   + E++L             +AE  F      D  D A           
Sbjct: 217 PFYDENDAK---LFEQIL-------------KAEYEFDSPYWDDISDSAK---------- 250
Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV 426
                               D ++ L+  DP +R    +AL+HP+   D 
Sbjct: 251 --------------------DFIRHLMEKDPEKRFTCEQALQHPWIAGDT 280

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 105/242 (43%), Gaps = 40/242 (16%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDV 141
           +G N    +RI  K+G G F +V           VA+K V+  +    K R   + EID+
Sbjct: 26  MGYNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDL 85
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLR-----KNSYRSFPIDLV 196
           L++L   ++     ++    F   N + IV E       D  R     K   R  P   V
Sbjct: 86  LKQLNHPNV-----IKYYASFIEDNELNIVLELADAG--DLSRMIKHFKKQKRLIPERTV 138
Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
            +   QL  ++  MH  R++H D+KP N+ + +   VK+ D          G +F +   
Sbjct: 139 WKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGL-------GRFFSS--- 188
Query: 257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA 316
                      TT  H     +V T +Y +PE I   G+N+  D+WS+GC+L E+ + ++
Sbjct: 189 ----------KTTAAHS----LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQS 234
Query: 317 LF 318
            F
Sbjct: 235 PF 236

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 82/348 (23%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 25  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 80
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 81  ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 137
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 138 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 173
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL-VELCSGEALFQTHENLE 325
             T  H   +    T +Y APEV+    ++  CD+WS+G I+ + LC     +  H    
Sbjct: 174 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI 233
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
              M  R+                     R  + ++P+   S  S               
Sbjct: 234 SPGMKTRI---------------------RMGQYEFPNPEWSEVS--------------- 257
Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                   ++  L++ LL+ +P +R+   E + HP+  +  +    PL
Sbjct: 258 -------EEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPL 298

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 82/348 (23%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 17  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 72
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 73  ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 129
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 130 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 165
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL-VELCSGEALFQTHENLE 325
             T  H   +    T +Y APEV+    ++  CD+WS+G I+ + LC     +  H    
Sbjct: 166 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI 225
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
              M  R+                     R  + ++P+   S  S               
Sbjct: 226 SPGMKTRI---------------------RMGQYEFPNPEWSEVS--------------- 249
Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                   ++  L++ LL+ +P +R+   E + HP+  +  +    PL
Sbjct: 250 -------EEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPL 290

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 82/348 (23%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 18  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 73
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 74  ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 130
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 131 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 166
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL-VELCSGEALFQTHENLE 325
             T  H   +    T +Y APEV+    ++  CD+WS+G I+ + LC     +  H    
Sbjct: 167 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI 226
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
              M  R+                     R  + ++P+   S  S               
Sbjct: 227 SPGMKTRI---------------------RMGQYEFPNPEWSEVS--------------- 250
Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                   ++  L++ LL+ +P +R+   E + HP+  +  +    PL
Sbjct: 251 -------EEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPL 291

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 38/238 (15%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 69  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 124
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 125 ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 181
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 182 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 217
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
             T  H   +    T +Y APEV+    ++  CD+WS+G I+  L  G   F ++  L
Sbjct: 218 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 275

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 38/238 (15%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 19  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 74
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 75  ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 131
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 132 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 167
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
             T  H   +    T +Y APEV+    ++  CD+WS+G I+  L  G   F ++  L
Sbjct: 168 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 225

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 122/301 (40%), Gaps = 41/301 (13%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-------NKYREAAMIEIDVLQRLA 146
           Y +  ++G G F  V +C      +  A K ++            RE    E+++L+ + 
Sbjct: 7   YEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIR 66
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
             +I     + + + F+ +  + ++ E + G  L+DFL +    S   D   +  +Q+L+
Sbjct: 67  HPNI-----ITLHDIFENKTDVVLILELVSGGELFDFLAEKE--SLTEDEATQFLKQILD 119
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            V ++H  R+ H DLKPENI+L+                       KN+P +  IKLIDF
Sbjct: 120 GVHYLHSKRIAHFDLKPENIMLLD----------------------KNVP-NPRIKLIDF 156
Query: 266 GSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
           G        + +  +  T  + APE++         D+WS+G I   L SG + F     
Sbjct: 157 GIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK 216
Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW-KLLRLPN 382
            E L  +  V               A+ + RR    D     T   S+   W K +R  N
Sbjct: 217 QETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRN 276
Query: 383 L 383
           +
Sbjct: 277 V 277

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 82/348 (23%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 19  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 74
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 75  ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 131
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 132 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 167
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL-VELCSGEALFQTHENLE 325
             T  H   +    T +Y APEV+    ++  CD+WS+G I+ + LC     +  H    
Sbjct: 168 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI 227
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
              M  R+                     R  + ++P+   S  S               
Sbjct: 228 SPGMKTRI---------------------RMGQYEFPNPEWSEVS--------------- 251
Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                   ++  L++ LL+ +P +R+   E + HP+  +  +    PL
Sbjct: 252 -------EEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPL 292

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 38/238 (15%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 63  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 118
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 119 ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 175
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 176 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 211
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
             T  H   +    T +Y APEV+    ++  CD+WS+G I+  L  G   F ++  L
Sbjct: 212 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 269

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 112/272 (41%), Gaps = 40/272 (14%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-------NKYREAAMIEIDVLQRLA 146
           Y +  ++G G F  V +C      +  A K ++            RE    E+++L+ + 
Sbjct: 28  YEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLXSSRRGVSREEIEREVNILREI- 86
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           RH       + + + F+ +  + ++ E + G  L+DFL +    S   D   +  +Q+L+
Sbjct: 87  RH----PNIITLHDIFENKTDVVLILELVSGGELFDFLAEKE--SLTEDEATQFLKQILD 140
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            V ++H  R+ H DLKPENI+L+                       KN+P +  IKLIDF
Sbjct: 141 GVHYLHSKRIAHFDLKPENIMLLD----------------------KNVP-NPRIKLIDF 177
Query: 266 GSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
           G        + +  +  T  + APE++         D+WS+G I   L SG + F     
Sbjct: 178 GIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK 237
Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
            E L  +  V               A+ + RR
Sbjct: 238 QETLTNISAVNYDFDEEYFSNTSELAKDFIRR 269

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 135/313 (43%), Gaps = 49/313 (15%)
Query: 80  GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR------------- 126
           G YV      +   Y  + K+G G +G+V+ C +       AIK+++             
Sbjct: 24  GMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDN 83
Query: 127 -SINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLR 184
            +I K+ E    EI +L+ L   +I     +++ + F+ + +  +V E   G  L++ + 
Sbjct: 84  KNIEKFHEEIYNEISLLKSLDHPNI-----IKLFDVFEDKKYFYLVTEFYEGGELFEQII 138
Query: 185 KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS 244
            N ++    D    + +Q+L  + ++H+  ++H D+KPENILL                 
Sbjct: 139 -NRHKFDECDAAN-IMKQILSGICYLHKHNIVHRDIKPENILL----------------- 179
Query: 245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLW 302
                  +N      IK++DFG ++F  +D+     + T +Y APEV L   +N  CD+W
Sbjct: 180 -------ENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEV-LKKKYNEKCDVW 231
Query: 303 SVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP 362
           S G I+  L  G   F    + + +  +E+       +        A++  +     D+ 
Sbjct: 232 SCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYN 291
Query: 363 DGATSRDSMRAVW 375
              T+ +++ + W
Sbjct: 292 KRCTAEEALNSRW 304

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 94/225 (41%), Gaps = 41/225 (18%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDIG--- 151
           L ++G+G+FG+V +  DN  KE+VAIKI+         E    EI VL +     I    
Sbjct: 24  LDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYF 83
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           G+     + W        I+ E L G S  D L+        I  +    R++L+ + ++
Sbjct: 84  GSYLKSTKLW--------IIMEYLGGGSALDLLKPGPLEETYIATIL---REILKGLDYL 132
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  R IH D+K  N+LL     VK+ D+                           G  T 
Sbjct: 133 HSERKIHRDIKAANVLLSEQGDVKLADFGVA------------------------GQLTD 168
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
                +  V T  + APEVI    +++  D+WS+G   +EL  GE
Sbjct: 169 TQIKRNXFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGE 213

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 82/348 (23%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 17  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 72
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 73  ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 129
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 130 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 165
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL-VELCSGEALFQTHENLE 325
             T  H   +    T +Y APEV+    ++  CD+WS+G I+ + LC     +  H    
Sbjct: 166 KETTSHNSLTEPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI 225
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
              M  R+                     R  + ++P+   S  S               
Sbjct: 226 SPGMKTRI---------------------RMGQYEFPNPEWSEVS--------------- 249
Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                   ++  L++ LL+ +P +R+   E + HP+  +  +    PL
Sbjct: 250 -------EEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPL 290

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 121/277 (43%), Gaps = 46/277 (16%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIK---IVRSINKYREAAMIEIDVLQRLARHD 149
           +Y  L K+GEG+FG+ +     E      IK   I R  +K RE +  E+ VL  +   +
Sbjct: 25  KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPN 84
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     VQ R  F+    + IV +   G  L+  +       F  D + +   Q+  ++ 
Sbjct: 85  I-----VQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALK 139
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
            +H+ +++H D+K +NI L                 +KDG+          ++L DFG  
Sbjct: 140 HVHDRKILHRDIKSQNIFL-----------------TKDGT----------VQLGDFGIA 172
Query: 267 ---STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ--TH 321
              ++T E       + T +Y +PE+     +N   D+W++GC+L ELC+ +  F+  + 
Sbjct: 173 RVLNSTVELARA--CIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM 230
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGAR 358
           +NL  L ++     P+  H          + F+R  R
Sbjct: 231 KNLV-LKIISGSFPPVSLHYSYDLRSLVSQLFKRNPR 266

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 133/340 (39%), Gaps = 80/340 (23%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G  G+V+ECF     +  A+K++    K R+    E+D   + +    GG   V I 
Sbjct: 18  LGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQ----EVDHHWQAS----GGPHIVCIL 69
Query: 160 NWFDYRNH----ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           + ++  +H    + I+ E + G  L+  +++   ++F      E+ R +  ++ F+H   
Sbjct: 70  DVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHN 129
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           + H D+KPEN+L  S E                        K + +KL DFG      Q+
Sbjct: 130 IAHRDVKPENLLYTSKE------------------------KDAVLKLTDFGFAKETTQN 165
Query: 275 HSYV-VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERV 333
                  T +Y APEV+    ++  CD+WS+G I+  L  G   F ++        M+R 
Sbjct: 166 ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRR 225
Query: 334 LGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG 393
           +             R  +Y                            PN     V   A 
Sbjct: 226 I-------------RLGQY--------------------------GFPNPEWSEVSEDAK 246
Query: 394 DLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
            LI L   LL+ DP ERL   + + HP+  + +     PL
Sbjct: 247 QLIRL---LLKTDPTERLTITQFMNHPWINQSMVVPQTPL 283

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 35/222 (15%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDIGGTR 154
           L ++G+G+FG+V +  DN  +++VAIKI+         E    EI VL +        + 
Sbjct: 28  LERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQC-----DSSY 82
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
             +    +   + + I+ E L G S  D LR   +  F I     + +++L+ + ++H  
Sbjct: 83  VTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQI---ATMLKEILKGLDYLHSE 139
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
           + IH D+K  N+LL     VK+ D+                           G  T    
Sbjct: 140 KKIHRDIKAANVLLSEQGDVKLADFGVA------------------------GQLTDTQI 175
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
             +  V T  + APEVI    ++   D+WS+G   +EL  GE
Sbjct: 176 KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGE 217

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 133/340 (39%), Gaps = 80/340 (23%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G  G+V+ECF     +  A+K++    K R+    E+D   + +    GG   V I 
Sbjct: 37  LGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQ----EVDHHWQAS----GGPHIVCIL 88
Query: 160 NWFDYRNH----ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           + ++  +H    + I+ E + G  L+  +++   ++F      E+ R +  ++ F+H   
Sbjct: 89  DVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHN 148
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           + H D+KPEN+L  S E                        K + +KL DFG      Q+
Sbjct: 149 IAHRDVKPENLLYTSKE------------------------KDAVLKLTDFGFAKETTQN 184
Query: 275 HSYV-VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERV 333
                  T +Y APEV+    ++  CD+WS+G I+  L  G   F ++        M+R 
Sbjct: 185 ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRR 244
Query: 334 LGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG 393
           +             R  +Y                            PN     V   A 
Sbjct: 245 I-------------RLGQY--------------------------GFPNPEWSEVSEDAK 265
Query: 394 DLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
            LI L   LL+ DP ERL   + + HP+  + +     PL
Sbjct: 266 QLIRL---LLKTDPTERLTITQFMNHPWINQSMVVPQTPL 302

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 143/392 (36%), Gaps = 104/392 (26%)
Query: 49  NGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQV 108
           N   P    +  F    P    P W           A  +    +Y     +G G    V
Sbjct: 62  NDAQPKGTENLYFQSMGPEDELPDW-----------AAAKEFYQKYDPKDVIGRGVSSVV 110
Query: 109 VECFDNEKKELVAIKIVR---------SINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
             C         A+KI+           + + REA   E  +L+++A H       + + 
Sbjct: 111 RRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGH----PHIITLI 166
Query: 160 NWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           + ++  + + +VF+ +    L+D+L +    +      R + R LLE+V+F+H   ++H 
Sbjct: 167 DSYESSSFMFLVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEAVSFLHANNIVHR 224
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DLKPENILL     +++ D+ F S   + G   + L                        
Sbjct: 225 DLKPENILLDDNMQIRLSDFGF-SCHLEPGEKLREL------------------------ 259
Query: 279 VSTRHYRAPEVI------LGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER 332
             T  Y APE++         G+    DLW+ G IL  L +G   F     +        
Sbjct: 260 CGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQI-------- 311
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
                   +++R     +  F   +  +W D +++                         
Sbjct: 312 --------LMLRMIMEGQYQF---SSPEWDDRSST------------------------- 335
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             + DL+  LL+ DP  RL A +AL+HPFF R
Sbjct: 336 --VKDLISRLLQVDPEARLTAEQALQHPFFER 365

>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1 Catalytic Domain Apo Form Length = 390

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 141/352 (40%), Gaps = 108/352 (30%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV-------RSINKYREAAMIEIDVLQRLA 146
           Y IL ++G G   +V +   NEKK++ AIK V       ++++ YR     EI  L +L 
Sbjct: 58  YSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRN----EIAYLNKLQ 112
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +H     + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+
Sbjct: 113 QH---SDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEA 167
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V  +H+  ++H+DLKP N L+V                  DG           +KLIDFG
Sbjct: 168 VHTIHQHGIVHSDLKPANFLIV------------------DG----------MLKLIDFG 199
Query: 267 STTFEHQDHSYV-----VSTRHYRAPEVILGLGWN-----------YPCDLWSVGCILVE 310
                  D + V     V T +Y  PE I  +  +              D+WS+GCIL  
Sbjct: 200 IANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 259
Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           +  G+  FQ  + +  ++ +  ++ P                      +++PD       
Sbjct: 260 MTYGKTPFQ--QIINQISKLHAIIDP-------------------NHEIEFPD------- 291
Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                    +P            DL D+L+  L+ DP +R+   E L HP+ 
Sbjct: 292 ---------IPE----------KDLQDVLKCCLKRDPKQRISIPELLAHPYV 324

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 140/364 (38%), Gaps = 86/364 (23%)
Query: 69  GSPPWRPDDKDGHYVFAIGENLT-----PRYRI--LSKMGEGTFGQVVECFDNEKKELVA 121
           GS P R   +  H  F     L      PR  +    K+GEG+ G V         +LVA
Sbjct: 1   GSSPQREPQRVSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVA 60
Query: 122 IKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLY 180
           +K +    + R   +    V+ R  +H+      V++ N +   + + +V E L G +L 
Sbjct: 61  VKKMDLRKQQRRELLFNEVVIMRDYQHE----NVVEMYNSYLVGDELWVVMEFLEGGALT 116
Query: 181 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF 240
           D +          + +  +   +L++++ +H   +IH D+K ++ILL     VK+ D+ F
Sbjct: 117 DIVTHTRMNE---EQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGF 173
Query: 241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCD 300
            ++ SK+    K L                        V T ++ APE+I  L +    D
Sbjct: 174 CAQVSKEVPRRKXL------------------------VGTPYWMAPELISRLPYGPEVD 209
Query: 301 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD 360
           +WS+G +++E+  GE  +     L+ + M+   L P                        
Sbjct: 210 IWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP------------------------ 245
Query: 361 WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP 420
                             RL NL        +  L   L  LL  DPA+R  A E L+HP
Sbjct: 246 ------------------RLKNL-----HKVSPSLKGFLDRLLVRDPAQRATAAELLKHP 282
Query: 421 FFTR 424
           F  +
Sbjct: 283 FLAK 286

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSI---NKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G F +  E  D + KE+ A KIV +S+      RE   +EI + + LA   + G   
Sbjct: 29  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVG--- 85
Query: 156 VQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                +F+  + + +V E     SL +  ++    + P    R   RQ++    ++H  R
Sbjct: 86  --FHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEP--EARYYLRQIVLGCQYLHRNR 141
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DLK  N+ L     VK+ D+   ++   DG   K L                    
Sbjct: 142 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTL-------------------- 181
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 T +Y APEV+   G ++  D+WS+GCI+  L  G+  F+T
Sbjct: 182 ----CGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET 223

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 48/252 (19%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           L  +G+GTFG+V+   +       A+KI+R           E+ + +    H +  +R +
Sbjct: 13  LKLLGKGTFGKVILVREKATGRYYAMKILRK----------EVIIAKDEVAHTVTESRVL 62
Query: 157 Q---------IRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           Q         ++  F   + +C V E   G  L+  L +   R F  +  R  G +++ +
Sbjct: 63  QNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSA 120
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H   +++ D+K EN++L    ++K+ D+        DG+  K              
Sbjct: 121 LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTF------------ 168
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENL 324
                         T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L
Sbjct: 169 ------------CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL 216
Query: 325 EHLAMMERVLGP 336
             L +ME +  P
Sbjct: 217 FELILMEEIRFP 228

>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With Atp Length = 342

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 141/352 (40%), Gaps = 108/352 (30%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV-------RSINKYREAAMIEIDVLQRLA 146
           Y IL ++G G   +V +   NEKK++ AIK V       ++++ YR     EI  L +L 
Sbjct: 58  YSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRN----EIAYLNKLQ 112
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +H     + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+
Sbjct: 113 QH---SDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEA 167
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V  +H+  ++H+DLKP N L+V                  DG           +KLIDFG
Sbjct: 168 VHTIHQHGIVHSDLKPANFLIV------------------DG----------MLKLIDFG 199
Query: 267 STTFEHQDHSYV-----VSTRHYRAPEVILGLGWN-----------YPCDLWSVGCILVE 310
                  D + V     V T +Y  PE I  +  +              D+WS+GCIL  
Sbjct: 200 IANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 259
Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           +  G+  FQ  + +  ++ +  ++ P                      +++PD       
Sbjct: 260 MTYGKTPFQ--QIINQISKLHAIIDP-------------------NHEIEFPD------- 291
Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                    +P            DL D+L+  L+ DP +R+   E L HP+ 
Sbjct: 292 ---------IPE----------KDLQDVLKCCLKRDPKQRISIPELLAHPYV 324

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 48/252 (19%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           L  +G+GTFG+V+   +       A+KI+R           E+ + +    H +  +R +
Sbjct: 10  LKLLGKGTFGKVILVREKATGRYYAMKILRK----------EVIIAKDEVAHTVTESRVL 59
Query: 157 Q---------IRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           Q         ++  F   + +C V E   G  L+  L +   R F  +  R  G +++ +
Sbjct: 60  QNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSA 117
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H   +++ D+K EN++L    ++K+ D+        DG+  K              
Sbjct: 118 LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTF------------ 165
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENL 324
                         T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L
Sbjct: 166 ------------CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL 213
Query: 325 EHLAMMERVLGP 336
             L +ME +  P
Sbjct: 214 FELILMEEIRFP 225

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 48/252 (19%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           L  +G+GTFG+V+   +       A+KI+R           E+ + +    H +  +R +
Sbjct: 10  LKLLGKGTFGKVILVREKATGRYYAMKILRK----------EVIIAKDEVAHTVTESRVL 59
Query: 157 Q---------IRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           Q         ++  F   + +C V E   G  L+  L +   R F  +  R  G +++ +
Sbjct: 60  QNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSA 117
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H   +++ D+K EN++L    ++K+ D+        DG+  K              
Sbjct: 118 LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTF------------ 165
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENL 324
                         T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L
Sbjct: 166 ------------CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL 213
Query: 325 EHLAMMERVLGP 336
             L +ME +  P
Sbjct: 214 FELILMEEIRFP 225

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSI---NKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G F +  E  D + KE+ A KIV +S+      RE   +EI + + LA   + G   
Sbjct: 25  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVG--- 81
Query: 156 VQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                +F+  + + +V E     SL +  ++    + P    R   RQ++    ++H  R
Sbjct: 82  --FHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEP--EARYYLRQIVLGCQYLHRNR 137
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DLK  N+ L     VK+ D+   ++   DG   K L                    
Sbjct: 138 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTL-------------------- 177
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 T +Y APEV+   G ++  D+WS+GCI+  L  G+  F+T
Sbjct: 178 ----CGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET 219

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSI---NKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G F +  E  D + KE+ A KIV +S+      RE   +EI + + LA   + G   
Sbjct: 25  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVG--- 81
Query: 156 VQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                +F+  + + +V E     SL +  ++    + P    R   RQ++    ++H  R
Sbjct: 82  --FHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEP--EARYYLRQIVLGCQYLHRNR 137
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DLK  N+ L     VK+ D+   ++   DG   K L                    
Sbjct: 138 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTL-------------------- 177
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 T +Y APEV+   G ++  D+WS+GCI+  L  G+  F+T
Sbjct: 178 ----CGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET 219

>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain Length = 343

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 108/351 (30%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV-------RSINKYREAAMIEIDVLQRLA 146
           Y IL ++G G   +V +   NEKK++ AIK V       ++++ YR     EI  L +L 
Sbjct: 11  YSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRN----EIAYLNKLQ 65
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +H     + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+
Sbjct: 66  QH---SDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEA 120
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V  +H+  ++H+DLKP N L+V                  DG           +KLIDFG
Sbjct: 121 VHTIHQHGIVHSDLKPANFLIV------------------DG----------MLKLIDFG 152
Query: 267 STTFEHQDHSYV-----VSTRHYRAPEVILGLGWN-----------YPCDLWSVGCILVE 310
                  D + V     V T +Y  PE I  +  +              D+WS+GCIL  
Sbjct: 153 IANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 212
Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           +  G+  FQ  + +  ++ +  ++ P                      +++PD       
Sbjct: 213 MTYGKTPFQ--QIINQISKLHAIIDP-------------------NHEIEFPD------- 244
Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                    +P            DL D+L+  L+ DP +R+   E L HP+
Sbjct: 245 ---------IP----------EKDLQDVLKCCLKRDPKQRISIPELLAHPY 276

>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (ttk) Length = 313

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 141/351 (40%), Gaps = 108/351 (30%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV-------RSINKYREAAMIEIDVLQRLA 146
           Y IL ++G G   +V +   NEKK++ AIK V       ++++ YR     EI  L +L 
Sbjct: 30  YSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRN----EIAYLNKLQ 84
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +H     + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+
Sbjct: 85  QH---SDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEA 139
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V  +H+  ++H+DLKP N L+V                  DG           +KLIDFG
Sbjct: 140 VHTIHQHGIVHSDLKPANFLIV------------------DG----------MLKLIDFG 171
Query: 267 STTFEHQDHSYV-----VSTRHYRAPEVILGLGWN-----------YPCDLWSVGCILVE 310
                  D + V     V T +Y  PE I  +  +              D+WS+GCIL  
Sbjct: 172 IANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 231
Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           +  G+  FQ  + +  ++ +  ++ P                      +++PD       
Sbjct: 232 MTYGKTPFQ--QIINQISKLHAIIDP-------------------NHEIEFPD------- 263
Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                    +P            DL D+L+  L+ DP +R+   E L HP+
Sbjct: 264 ---------IP----------EKDLQDVLKCCLKRDPKQRISIPELLAHPY 295

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 44/294 (14%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY-------REAAMIEIDVLQRLA 146
           Y I  ++G G F  V +C +       A K ++            RE    E+ +L+++ 
Sbjct: 14  YDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVL 73
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
             +I     + + + ++ R  + ++ E + G  L+DFL +    S   +      +Q+L+
Sbjct: 74  HPNI-----ITLHDVYENRTDVVLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILD 126
Query: 206 SVAFMHELRLIHTDLKPENILLVSAE----YVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
            V ++H  ++ H DLKPENI+L+       ++K+ D+  L+   +DG  FKN+       
Sbjct: 127 GVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFG-LAHEIEDGVEFKNI------- 178
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
              FG              T  + APE++         D+WS+G I   L SG + F   
Sbjct: 179 ---FG--------------TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD 221
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
              E LA +  V          +    A+ + R+    +     T ++++R  W
Sbjct: 222 TKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPW 275

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 131/327 (40%), Gaps = 79/327 (24%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+GEG+ G V         +LVA+K +    + R   +    V+ R  +H+      V++
Sbjct: 158 KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHE----NVVEM 213
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
            N +   + + +V E L G +L D +   ++     + +  +   +L++++ +H   +IH
Sbjct: 214 YNSYLVGDELWVVMEFLEGGALTDIV---THTRMNEEQIAAVCLAVLQALSVLHAQGVIH 270
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            D+K ++ILL     VK+ D+ F ++ SK+    K L                       
Sbjct: 271 RDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXL----------------------- 307
Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
            V T ++ APE+I  L +    D+WS+G +++E+  GE  +     L+ + M+   L P 
Sbjct: 308 -VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP- 365
Query: 338 PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID 397
                                                    RL NL        +  L  
Sbjct: 366 -----------------------------------------RLKNL-----HKVSPSLKG 379
Query: 398 LLQGLLRYDPAERLKAREALRHPFFTR 424
            L  LL  DPA+R  A E L+HPF  +
Sbjct: 380 FLDRLLVRDPAQRATAAELLKHPFLAK 406

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 129/327 (39%), Gaps = 79/327 (24%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+GEG+ G V         +LVA+K +    + R   +    V+ R  +H+      V++
Sbjct: 81  KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHE----NVVEM 136
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
            N +   + + +V E L G +L D +          + +  +   +L++++ +H   +IH
Sbjct: 137 YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNE---EQIAAVCLAVLQALSVLHAQGVIH 193
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            D+K ++ILL     VK+ D+ F ++ SK+    K L                       
Sbjct: 194 RDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXL----------------------- 230
Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
            V T ++ APE+I  L +    D+WS+G +++E+  GE  +     L+ + M+   L P 
Sbjct: 231 -VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP- 288
Query: 338 PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID 397
                                                    RL NL        +  L  
Sbjct: 289 -----------------------------------------RLKNL-----HKVSPSLKG 302
Query: 398 LLQGLLRYDPAERLKAREALRHPFFTR 424
            L  LL  DPA+R  A E L+HPF  +
Sbjct: 303 FLDRLLVRDPAQRATAAELLKHPFLAK 329

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 48/252 (19%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           L  +G+GTFG+V+   +       A+KI+R           E+ + +    H +  +R +
Sbjct: 10  LKLLGKGTFGKVILVREKATGRYYAMKILRK----------EVIIAKDEVAHTVTESRVL 59
Query: 157 Q---------IRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           Q         ++  F   + +C V E   G  L+  L +   R F  +  R  G +++ +
Sbjct: 60  QNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSA 117
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H   +++ D+K EN++L    ++K+ D+        DG+  K              
Sbjct: 118 LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXF------------ 165
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENL 324
                         T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L
Sbjct: 166 ------------CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL 213
Query: 325 EHLAMMERVLGP 336
             L +ME +  P
Sbjct: 214 FELILMEEIRFP 225

>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715 Length = 317

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 141/352 (40%), Gaps = 108/352 (30%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV-------RSINKYREAAMIEIDVLQRLA 146
           Y IL ++G G   +V +   NEKK++ AIK V       ++++ YR     EI  L +L 
Sbjct: 14  YSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRN----EIAYLNKLQ 68
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +H     + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+
Sbjct: 69  QH---SDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEA 123
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V  +H+  ++H+DLKP N L+V                  DG           +KLIDFG
Sbjct: 124 VHTIHQHGIVHSDLKPANFLIV------------------DG----------MLKLIDFG 155
Query: 267 STTFEHQDHSYV-----VSTRHYRAPEVILGLGWN-----------YPCDLWSVGCILVE 310
                  D + V     V T +Y  PE I  +  +              D+WS+GCIL  
Sbjct: 156 IANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 215
Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           +  G+  FQ  + +  ++ +  ++ P                      +++PD       
Sbjct: 216 MTYGKTPFQ--QIINQISKLHAIIDP-------------------NHEIEFPD------- 247
Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                    +P            DL D+L+  L+ DP +R+   E L HP+ 
Sbjct: 248 ---------IP----------EKDLQDVLKCCLKRDPKQRISIPELLAHPYV 280

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 103/252 (40%), Gaps = 48/252 (19%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           L  +G+GTFG+V+   +       A+KI+R           E+ + +    H +  +R +
Sbjct: 10  LKLLGKGTFGKVILVREKATGRYYAMKILRK----------EVIIAKDEVAHTVTESRVL 59
Query: 157 Q---------IRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           Q         ++  F   + +C V E   G  L+  L +   R F  +  R  G +++ +
Sbjct: 60  QNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSA 117
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H   +++ D+K EN++L    ++K+ D+        DG+  K              
Sbjct: 118 LEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXF------------ 165
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENL 324
                         T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L
Sbjct: 166 ------------CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERL 213
Query: 325 EHLAMMERVLGP 336
             L +ME +  P
Sbjct: 214 FELILMEEIRFP 225

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++  +  +  
Sbjct: 43  QFERIRTLGTGSFGRVMLVKHKETGNHYAMKILDK-QKVVKLKQIEHTLNEKRIQQAVNF 101
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E   G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 102 PFLVKLEFSFKDNSNLYMVLEYAPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 159
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y+KV D+ F  R                      G T   
Sbjct: 160 SLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVK--------------------GRTW-- 197
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 198 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 48/255 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           +  L  +G+GTFG+V+   +       A+KI+R           E+ + +    H +  +
Sbjct: 12  FDYLKLLGKGTFGKVILVREKATGRYYAMKILRK----------EVIIAKDEVAHTVTES 61
Query: 154 RCVQ---------IRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQL 203
           R +Q         ++  F   + +C V E   G  L+  L +   R F  +  R  G ++
Sbjct: 62  RVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEI 119
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           + ++ ++H   +++ D+K EN++L    ++K+ D+        DG+  K           
Sbjct: 120 VSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXF--------- 170
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTH 321
                            T  Y APEV+    +    D W +G ++ E+  G   F  Q H
Sbjct: 171 ---------------CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH 215
Query: 322 ENLEHLAMMERVLGP 336
           E L  L +ME +  P
Sbjct: 216 ERLFELILMEEIRFP 230

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 48/255 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           +  L  +G+GTFG+V+   +       A+KI+R           E+ + +    H +  +
Sbjct: 7   FDYLKLLGKGTFGKVILVREKATGRYYAMKILRK----------EVIIAKDEVAHTVTES 56
Query: 154 RCVQ---------IRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQL 203
           R +Q         ++  F   + +C V E   G  L+  L +   R F  +  R  G ++
Sbjct: 57  RVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEI 114
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           + ++ ++H   +++ D+K EN++L    ++K+ D+        DG+  K           
Sbjct: 115 VSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKXF--------- 165
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTH 321
                            T  Y APEV+    +    D W +G ++ E+  G   F  Q H
Sbjct: 166 ---------------CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH 210
Query: 322 ENLEHLAMMERVLGP 336
           E L  L +ME +  P
Sbjct: 211 ERLFELILMEEIRFP 225

>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2- Yl)amino]benzamide Length = 320

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 141/352 (40%), Gaps = 108/352 (30%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV-------RSINKYREAAMIEIDVLQRLA 146
           Y IL ++G G   +V +   NEKK++ AIK V       ++++ YR     EI  L +L 
Sbjct: 10  YSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRN----EIAYLNKLQ 64
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +H     + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+
Sbjct: 65  QH---SDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEA 119
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V  +H+  ++H+DLKP N L+V                  DG           +KLIDFG
Sbjct: 120 VHTIHQHGIVHSDLKPANFLIV------------------DG----------MLKLIDFG 151
Query: 267 STTFEHQDHSYV-----VSTRHYRAPEVILGLGWN-----------YPCDLWSVGCILVE 310
                  D + V     V T +Y  PE I  +  +              D+WS+GCIL  
Sbjct: 152 IANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 211
Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           +  G+  FQ  + +  ++ +  ++ P                      +++PD       
Sbjct: 212 MTYGKTPFQ--QIINQISKLHAIIDP-------------------NHEIEFPD------- 243
Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                    +P            DL D+L+  L+ DP +R+   E L HP+ 
Sbjct: 244 ---------IPE----------KDLQDVLKCCLKRDPKQRISIPELLAHPYV 276

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 36/230 (15%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAM-IEIDVLQRLAR 147
           N+   +  +  +G G F +V         +L A+K ++    +R++++  EI VL+++  
Sbjct: 6   NIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKH 65
Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYD-FLRKNSYRSFPIDLVRELGRQLLE 205
            +I     V + + ++   H  +V + + G  L+D  L +  Y      LV +   Q+L 
Sbjct: 66  ENI-----VTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQ---QVLS 117
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V ++HE  ++H DLKPEN+L ++ E                        ++S I + DF
Sbjct: 118 AVKYLHENGIVHRDLKPENLLYLTPE------------------------ENSKIMITDF 153
Query: 266 GSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           G +  E     S    T  Y APEV+    ++   D WS+G I   L  G
Sbjct: 154 GLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCG 203

>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (Ttk) In Complex With A Pyrimido-Diazepin Ligand Length = 313

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 140/351 (39%), Gaps = 108/351 (30%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV-------RSINKYREAAMIEIDVLQRLA 146
           Y IL ++G G   +V +   NEKK++ AIK V       ++++ YR     EI  L +L 
Sbjct: 30  YSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRN----EIAYLNKLQ 84
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +H     + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+
Sbjct: 85  QH---SDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEA 139
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V  +H+  ++H+DLKP N L+V                  DG           +KLIDFG
Sbjct: 140 VHTIHQHGIVHSDLKPANFLIV------------------DG----------MLKLIDFG 171
Query: 267 STTFEHQDHSYV-----VSTRHYRAPEVILGLGWN-----------YPCDLWSVGCILVE 310
                  D   V     V T +Y  PE I  +  +              D+WS+GCIL  
Sbjct: 172 IANQMQPDXXXVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 231
Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           +  G+  FQ  + +  ++ +  ++ P                      +++PD       
Sbjct: 232 MTYGKTPFQ--QIINQISKLHAIIDP-------------------NHEIEFPD------- 263
Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                    +P            DL D+L+  L+ DP +R+   E L HP+
Sbjct: 264 ---------IP----------EKDLQDVLKCCLKRDPKQRISIPELLAHPY 295

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSI---NKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G F +  E  D + KE+ A KIV +S+      RE   +EI + + LA   + G   
Sbjct: 47  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVG--- 103
Query: 156 VQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                +F+  + + +V E     SL +  ++    + P    R   RQ++    ++H  R
Sbjct: 104 --FHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEP--EARYYLRQIVLGCQYLHRNR 159
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DLK  N+ L     VK+ D+   ++   DG   K L                    
Sbjct: 160 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVL-------------------- 199
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 T +Y APEV+   G ++  D+WS+GCI+  L  G+  F+T
Sbjct: 200 ----CGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET 241

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 129/327 (39%), Gaps = 79/327 (24%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+GEG+ G V         +LVA+K +    + R   +    V+ R  +H+      V++
Sbjct: 31  KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHE----NVVEM 86
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
            N +   + + +V E L G +L D +          + +  +   +L++++ +H   +IH
Sbjct: 87  YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNE---EQIAAVCLAVLQALSVLHAQGVIH 143
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            D+K ++ILL     VK+ D+ F ++ SK+    K L                       
Sbjct: 144 RDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXL----------------------- 180
Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
            V T ++ APE+I  L +    D+WS+G +++E+  GE  +     L+ + M+   L P 
Sbjct: 181 -VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP- 238
Query: 338 PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID 397
                                                    RL NL        +  L  
Sbjct: 239 -----------------------------------------RLKNL-----HKVSPSLKG 252
Query: 398 LLQGLLRYDPAERLKAREALRHPFFTR 424
            L  LL  DPA+R  A E L+HPF  +
Sbjct: 253 FLDRLLVRDPAQRATAAELLKHPFLAK 279

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 129/327 (39%), Gaps = 79/327 (24%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+GEG+ G V         +LVA+K +    + R   +    V+ R  +H+      V++
Sbjct: 36  KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHE----NVVEM 91
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
            N +   + + +V E L G +L D +          + +  +   +L++++ +H   +IH
Sbjct: 92  YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNE---EQIAAVCLAVLQALSVLHAQGVIH 148
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            D+K ++ILL     VK+ D+ F ++ SK+    K L                       
Sbjct: 149 RDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXL----------------------- 185
Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
            V T ++ APE+I  L +    D+WS+G +++E+  GE  +     L+ + M+   L P 
Sbjct: 186 -VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP- 243
Query: 338 PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID 397
                                                    RL NL        +  L  
Sbjct: 244 -----------------------------------------RLKNL-----HKVSPSLKG 257
Query: 398 LLQGLLRYDPAERLKAREALRHPFFTR 424
            L  LL  DPA+R  A E L+HPF  +
Sbjct: 258 FLDRLLVRDPAQRATAAELLKHPFLAK 284

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 129/307 (42%), Gaps = 64/307 (20%)
Query: 81  HYVFAIGENLTP-RYRILSKMGEGTFGQVV---ECFDNEKKELVAIKIVRSINKYREAAM 136
           H+V    E   P ++ +L  +G+G+FG+V    +   ++ ++L A+K+++      +A +
Sbjct: 12  HHVKEGHEKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLK------KATL 65
Query: 137 IEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLV 196
              D ++     DI     V++ + F  + H     E     + DFLR         DL 
Sbjct: 66  KVRDRVRTKMERDI----LVEVNHPFIVKLHYAFQTEGKLYLILDFLRGG-------DLF 114
Query: 197 RELGRQLL---ESVAF-----------MHELRLIHTDLKPENILLVSAEYVKVPDYKFLS 242
             L ++++   E V F           +H L +I+ DLKPENILL    ++K+ D+  LS
Sbjct: 115 TRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFG-LS 173
Query: 243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDL 301
           + S D                        H+  +Y    T  Y APEV+   G     D 
Sbjct: 174 KESID------------------------HEKKAYSFCGTVEYMAPEVVNRRGHTQSADW 209
Query: 302 WSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR--GARL 359
           WS G ++ E+ +G   FQ  +  E + M+ +    +P  +   A       F+R    RL
Sbjct: 210 WSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRL 269
Query: 360 D-WPDGA 365
              PDG 
Sbjct: 270 GAGPDGV 276

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSI---NKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G F +  E  D + KE+ A KIV +S+      RE   +EI + + LA   + G   
Sbjct: 49  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVG--- 105
Query: 156 VQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                +F+  + + +V E     SL +  ++    + P    R   RQ++    ++H  R
Sbjct: 106 --FHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEP--EARYYLRQIVLGCQYLHRNR 161
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DLK  N+ L     VK+ D+   ++   DG   K L                    
Sbjct: 162 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVL-------------------- 201
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 T +Y APEV+   G ++  D+WS+GCI+  L  G+  F+T
Sbjct: 202 ----CGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET 243

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 129/327 (39%), Gaps = 79/327 (24%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+GEG+ G V         +LVA+K +    + R   +    V+ R  +H+      V++
Sbjct: 27  KIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHE----NVVEM 82
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
            N +   + + +V E L G +L D +          + +  +   +L++++ +H   +IH
Sbjct: 83  YNSYLVGDELWVVMEFLEGGALTDIVTHTRMNE---EQIAAVCLAVLQALSVLHAQGVIH 139
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            D+K ++ILL     VK+ D+ F ++ SK+    K L                       
Sbjct: 140 RDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXL----------------------- 176
Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
            V T ++ APE+I  L +    D+WS+G +++E+  GE  +     L+ + M+   L P 
Sbjct: 177 -VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPP- 234
Query: 338 PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID 397
                                                    RL NL        +  L  
Sbjct: 235 -----------------------------------------RLKNL-----HKVSPSLKG 248
Query: 398 LLQGLLRYDPAERLKAREALRHPFFTR 424
            L  LL  DPA+R  A E L+HPF  +
Sbjct: 249 FLDRLLVRDPAQRATAAELLKHPFLAK 275

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSI---NKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G F +  E  D + KE+ A K+V +S+      +E    EI + + L    + G   
Sbjct: 50  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVG--- 106
Query: 156 VQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                +F+  + + +V E     SL +  ++    + P    R   RQ ++ V ++H  R
Sbjct: 107 --FHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEP--EARYFMRQTIQGVQYLHNNR 162
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DLK  N+ L     VK+ D+   ++   DG   K+L                    
Sbjct: 163 VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKDL-------------------- 202
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 T +Y APEV+   G ++  D+WS+GCIL  L  G+  F+T
Sbjct: 203 ----CGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFET 244

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 127/289 (43%), Gaps = 49/289 (16%)
Query: 48  GNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPR--YRILSKMGEGTF 105
           GN G+    C  +   ++P   S P +P +KD   +        PR   ++  K+G G F
Sbjct: 157 GNDGL----CQKL---SVPCMSSKPQKPWEKDAWEI--------PRESLKLEKKLGAGQF 201
Query: 106 GQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR 165
           G+V     N K   VA+K ++  +   EA + E +V++ L +HD    + V++      +
Sbjct: 202 GEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTL-QHD----KLVKLHAVVT-K 254
Query: 166 NHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPEN 224
             I I+ E +   SL DFL+ +     P+  + +   Q+ E +AF+ +   IH DL+  N
Sbjct: 255 EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAAN 314
Query: 225 ILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHY 284
           IL+ ++   K+ D+  L+R  +D  Y         IK                      +
Sbjct: 315 ILVSASLVCKIADFG-LARVIEDNEYTAREGAKFPIK----------------------W 351
Query: 285 RAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
            APE I    +    D+WS G +L+E+ + G   +    N E +  +ER
Sbjct: 352 TAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALER 400

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSI---NKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G F +  E  D + KE+ A K+V +S+      +E    EI + + L    + G   
Sbjct: 34  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVG--- 90
Query: 156 VQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                +F+  + + +V E     SL +  ++    + P    R   RQ ++ V ++H  R
Sbjct: 91  --FHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEP--EARYFMRQTIQGVQYLHNNR 146
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DLK  N+ L     VK+ D+   ++   DG   K+L                    
Sbjct: 147 VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKDL-------------------- 186
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 T +Y APEV+   G ++  D+WS+GCIL  L  G+  F+T
Sbjct: 187 ----CGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFET 228

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSI---NKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G F +  E  D + KE+ A KIV +S+      RE   +EI + + LA   + G   
Sbjct: 23  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVG--- 79
Query: 156 VQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                +F+  + + +V E     SL +  ++    + P    R   RQ++    ++H  R
Sbjct: 80  --FHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEP--EARYYLRQIVLGCQYLHRNR 135
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DLK  N+ L     VK+ D+   ++   DG   K L                    
Sbjct: 136 VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVL-------------------- 175
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 T +Y APEV+   G ++  D+WS+GCI+  L  G+  F+T
Sbjct: 176 ----CGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET 217

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 67  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 125
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 126 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 183
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G+T       
Sbjct: 184 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GATW------ 217
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 218 -TLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 255

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y+KV D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a Mutant In Complex With Sp600125 Inhibitor Length = 390

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 140/352 (39%), Gaps = 108/352 (30%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV-------RSINKYREAAMIEIDVLQRLA 146
           Y IL ++G G   +V +   NEKK++ AIK V       ++++ YR     EI  L +L 
Sbjct: 58  YSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRN----EIAYLNKLQ 112
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +H     + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+
Sbjct: 113 QH---SDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEA 167
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V  +H+  ++H+DLKP N L+V                  DG           +KLIDFG
Sbjct: 168 VHTIHQHGIVHSDLKPANFLIV------------------DG----------MLKLIDFG 199
Query: 267 STTFEHQDHSYVVSTR-----HYRAPEVILGLGWN-----------YPCDLWSVGCILVE 310
                  D + VV        +Y  PE I  +  +              D+WS+GCIL  
Sbjct: 200 IANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYY 259
Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           +  G+  FQ  + +  ++ +  ++ P                      +++PD       
Sbjct: 260 MTYGKTPFQ--QIINQISKLHAIIDP-------------------NHEIEFPD------- 291
Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                    +P            DL D+L+  L+ DP +R+   E L HP+ 
Sbjct: 292 ---------IPE----------KDLQDVLKCCLKRDPKQRISIPELLAHPYV 324

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 35/228 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-EAAMIEIDVLQRLARHDIGG 152
           + I+ ++G+G FG+V +  + E   L A K++ + ++   E  ++EI++L       I  
Sbjct: 21  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYI-- 78
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
              V++   + +   + I+ E       D +     R      ++ + RQ+LE++ F+H 
Sbjct: 79  ---VKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHS 135
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
            R+IH DLK  N+L+     +++ D+         G   KNL              T + 
Sbjct: 136 KRIIHRDLKAGNVLMTLEGDIRLADF---------GVSAKNL-------------KTLQK 173
Query: 273 QDHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGE 315
           +D    + T ++ APEV++        ++Y  D+WS+G  L+E+   E
Sbjct: 174 RDS--FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIE 219

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y+KV D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 129/307 (42%), Gaps = 64/307 (20%)
Query: 81  HYVFAIGENLTP-RYRILSKMGEGTFGQVV---ECFDNEKKELVAIKIVRSINKYREAAM 136
           H+V    E   P ++ +L  +G+G+FG+V    +   ++ ++L A+K+++      +A +
Sbjct: 13  HHVKEGHEKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLK------KATL 66
Query: 137 IEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLV 196
              D ++     DI     V++ + F  + H     E     + DFLR         DL 
Sbjct: 67  KVRDRVRTKMERDI----LVEVNHPFIVKLHYAFQTEGKLYLILDFLRGG-------DLF 115
Query: 197 RELGRQLL---ESVAF-----------MHELRLIHTDLKPENILLVSAEYVKVPDYKFLS 242
             L ++++   E V F           +H L +I+ DLKPENILL    ++K+ D+  LS
Sbjct: 116 TRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFG-LS 174
Query: 243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDL 301
           + S D                        H+  +Y    T  Y APEV+   G     D 
Sbjct: 175 KESID------------------------HEKKAYSFCGTVEYMAPEVVNRRGHTQSADW 210
Query: 302 WSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR--GARL 359
           WS G ++ E+ +G   FQ  +  E + M+ +    +P  +   A       F+R    RL
Sbjct: 211 WSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRL 270
Query: 360 D-WPDGA 365
              PDG 
Sbjct: 271 GAGPDGV 277

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 129/307 (42%), Gaps = 64/307 (20%)
Query: 81  HYVFAIGENLTP-RYRILSKMGEGTFGQVV---ECFDNEKKELVAIKIVRSINKYREAAM 136
           H+V    E   P ++ +L  +G+G+FG+V    +   ++ ++L A+K+++      +A +
Sbjct: 12  HHVKEGHEKADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLK------KATL 65
Query: 137 IEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLV 196
              D ++     DI     V++ + F  + H     E     + DFLR         DL 
Sbjct: 66  KVRDRVRTKMERDI----LVEVNHPFIVKLHYAFQTEGKLYLILDFLRGG-------DLF 114
Query: 197 RELGRQLL---ESVAF-----------MHELRLIHTDLKPENILLVSAEYVKVPDYKFLS 242
             L ++++   E V F           +H L +I+ DLKPENILL    ++K+ D+  LS
Sbjct: 115 TRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFG-LS 173
Query: 243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDL 301
           + S D                        H+  +Y    T  Y APEV+   G     D 
Sbjct: 174 KESID------------------------HEKKAYSFCGTVEYMAPEVVNRRGHTQSADW 209
Query: 302 WSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR--GARL 359
           WS G ++ E+ +G   FQ  +  E + M+ +    +P  +   A       F+R    RL
Sbjct: 210 WSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRL 269
Query: 360 D-WPDGA 365
              PDG 
Sbjct: 270 GAGPDGV 276

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 36/226 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSI---NKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G F +  E  D + KE+ A K+V +S+      +E    EI + + L    + G   
Sbjct: 50  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVG--- 106
Query: 156 VQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                +F+  + + +V E     SL +  ++    + P    R   RQ ++ V ++H  R
Sbjct: 107 --FHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEP--EARYFMRQTIQGVQYLHNNR 162
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DLK  N+ L     VK+ D+   ++   DG   K L                    
Sbjct: 163 VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKTL-------------------- 202
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 T +Y APEV+   G ++  D+WS+GCIL  L  G+  F+T
Sbjct: 203 ----CGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFET 244

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 35/228 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR-EAAMIEIDVLQRLARHDIGG 152
           + I+ ++G+G FG+V +  + E   L A K++ + ++   E  ++EI++L       I  
Sbjct: 13  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYI-- 70
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
              V++   + +   + I+ E       D +     R      ++ + RQ+LE++ F+H 
Sbjct: 71  ---VKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHS 127
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
            R+IH DLK  N+L+     +++ D+         G   KNL              T + 
Sbjct: 128 KRIIHRDLKAGNVLMTLEGDIRLADF---------GVSAKNL-------------KTLQK 165
Query: 273 QDHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGE 315
           +D    + T ++ APEV++        ++Y  D+WS+G  L+E+   E
Sbjct: 166 RDS--FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIE 211

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHKETGNHFAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLAGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTIGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y+KV D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 43  QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 101
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 159
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 160 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 197
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 198 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 43  QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 101
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 159
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 160 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 197
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 198 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 43  QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 101
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 159
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 160 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 197
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 198 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 63  QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 121
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 122 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 179
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 180 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 217
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 218 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 255

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 36/226 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSI---NKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G+G F +  E  D + KE+ A K+V +S+      +E    EI + + L    + G   
Sbjct: 50  LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVG--- 106
Query: 156 VQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
                +F+  + + +V E     SL +  ++    + P    R   RQ ++ V ++H  R
Sbjct: 107 --FHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEP--EARYFMRQTIQGVQYLHNNR 162
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DLK  N+ L     VK+ D+   ++   DG   K L                    
Sbjct: 163 VIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKXL-------------------- 202
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
                 T +Y APEV+   G ++  D+WS+GCIL  L  G+  F+T
Sbjct: 203 ----CGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFET 244

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 45/248 (18%)
Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA---------AMIEIDV 141
           + +Y  +S +G G FG V    D EK + V +K ++      +            +EI +
Sbjct: 23  SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAI 82
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGR 201
           L R+   +I     +++ + F+ +    +V EK G  L  F   + +      L   + R
Sbjct: 83  LSRVEHANI-----IKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFR 137
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           QL+ +V ++    +IH D+K ENI++         D+                     IK
Sbjct: 138 QLVSAVGYLRLKDIIHRDIKDENIVIAE-------DF--------------------TIK 170
Query: 262 LIDFGSTTFEHQDHSYVV--STRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALF 318
           LIDFGS  +  +   +     T  Y APEV++G  +  P  ++WS+G  L  L   E  F
Sbjct: 171 LIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPF 230
Query: 319 -QTHENLE 325
            +  E +E
Sbjct: 231 CELEETVE 238

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 35  QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 93
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 94  PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 151
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 152 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 189
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 190 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 227

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLXGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 43  QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 101
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E   G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 159
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+++    Y+KV D+ F  R                      G T   
Sbjct: 160 SLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVK--------------------GRTW-- 197
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 198 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 31/230 (13%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G   F   E ++
Sbjct: 197 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADEPIQ 245

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 47  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 105
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 106 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 163
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 164 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 197
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 198 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 37/240 (15%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL 145
           IG+ +  RY+I+ K+G G    V    D      VAIK +    + +E      + L+R 
Sbjct: 5   IGKIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKE------ETLKRF 58
Query: 146 AR--HDIGGTRCVQIRNWFDY-RNHIC--IVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
            R  H+        I +  D      C  +V E + GP+L +++   S+    +D     
Sbjct: 59  EREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIE--SHGPLSVDTAINF 116
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L+ +   H++R++H D+KP+NIL+ S + +K+ D+      S+             
Sbjct: 117 TNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE------------- 163
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                   T+    +H  V+ T  Y +PE   G   +   D++S+G +L E+  GE  F 
Sbjct: 164 --------TSLTQTNH--VLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFN 213

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 33  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 91
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 92  KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 149
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 150 IYRDLKPENLLIDEQGYIQVTDFGFAKRVK--------------------GRTW------ 183
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 184 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 221

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 129/344 (37%), Gaps = 84/344 (24%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL 145
           IGE +   +++ + +G+G+F  V           VAIK++     Y+ A M++  V   +
Sbjct: 6   IGEKIED-FKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYK-AGMVQ-RVQNEV 62
Query: 146 ARH-DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
             H  +     +++ N+F+  N++ +V E       +   KN  + F  +  R    Q++
Sbjct: 63  KIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQII 122
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + ++H   ++H DL   N+LL                            ++  IK+ D
Sbjct: 123 TGMLYLHSHGILHRDLTLSNLLLT---------------------------RNMNIKIAD 155
Query: 265 FGSTT---FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
           FG  T     H+ H  +  T +Y +PE+          D+WS+GC+   L  G   F T 
Sbjct: 156 FGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDT- 214
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
                    + V   L  + V+ AD     +    A+                       
Sbjct: 215 ---------DTVKNTL--NKVVLADYEMPSFLSIEAK----------------------- 240
Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                          DL+  LLR +PA+RL     L HPF +R+
Sbjct: 241 ---------------DLIHQLLRRNPADRLSLSSVLDHPFMSRN 269

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 110/238 (46%), Gaps = 38/238 (15%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K ++   K R     E+++  R ++  H +
Sbjct: 63  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKXLQDCPKARR----EVELHWRASQCPHIV 118
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 119 ---RIVDVYENLYAGRKCLLIVXECLDGGELFSRIQDRGDQAFTEREASEIXKSIGEAIQ 175
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 176 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 211
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
             T  H   +    T +Y APEV+    ++  CD WS+G I   L  G   F ++  L
Sbjct: 212 KETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDXWSLGVIXYILLCGYPPFYSNHGL 269

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 43  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 101
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 159
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 160 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 197
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 198 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 131/337 (38%), Gaps = 83/337 (24%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           Y +   +G G++ +   C         A+K+   I+K +     EI++L R  +H     
Sbjct: 29  YVVKETIGVGSYSECKRCVHKATNMEYAVKV---IDKSKRDPSEEIEILLRYGQH----P 81
Query: 154 RCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLV-RELGRQLLESVAFM 210
             + +++ +D   H+ +V E +  G  L   LR+  +       V   +G+    +V ++
Sbjct: 82  NIITLKDVYDDGKHVYLVTELMRGGELLDKILRQKFFSEREASFVLHTIGK----TVEYL 137
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H   ++H DLKP NIL                       Y         +++ DFG    
Sbjct: 138 HSQGVVHRDLKPSNIL-----------------------YVDESGNPECLRICDFGFAKQ 174
Query: 271 EHQDHSYVVS---TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
              ++  +++   T ++ APEV+   G++  CD+WS+G +L  + +G   F         
Sbjct: 175 LRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFAN------- 227
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
                  GP        +D   E   R G+      G          W            
Sbjct: 228 -------GP--------SDTPEEILTRIGSGKFTLSGGN--------WNT---------- 254
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           V  +A DL+     +L  DP +RL A++ L+HP+ T+
Sbjct: 255 VSETAKDLVS---KMLHVDPHQRLTAKQVLQHPWVTQ 288

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 43  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 101
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 159
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 160 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 197
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 198 -----TLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 131/337 (38%), Gaps = 83/337 (24%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           Y +   +G G++ +   C         A+K+   I+K +     EI++L R  +H     
Sbjct: 29  YVVKETIGVGSYSECKRCVHKATNMEYAVKV---IDKSKRDPSEEIEILLRYGQH----P 81
Query: 154 RCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLV-RELGRQLLESVAFM 210
             + +++ +D   H+ +V E +  G  L   LR+  +       V   +G+    +V ++
Sbjct: 82  NIITLKDVYDDGKHVYLVTELMRGGELLDKILRQKFFSEREASFVLHTIGK----TVEYL 137
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H   ++H DLKP NIL                       Y         +++ DFG    
Sbjct: 138 HSQGVVHRDLKPSNIL-----------------------YVDESGNPECLRICDFGFAKQ 174
Query: 271 EHQDHSYVVS---TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
              ++  +++   T ++ APEV+   G++  CD+WS+G +L  + +G   F         
Sbjct: 175 LRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFAN------- 227
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
                  GP        +D   E   R G+      G          W            
Sbjct: 228 -------GP--------SDTPEEILTRIGSGKFTLSGGN--------WNT---------- 254
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           V  +A DL+     +L  DP +RL A++ L+HP+ T+
Sbjct: 255 VSETAKDLVS---KMLHVDPHQRLTAKQVLQHPWVTQ 288

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E   G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+++    Y+KV D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 44/230 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           +Y    K+G+G  G V    D    + VAI+ +    + ++  +I   ++ R  ++    
Sbjct: 21  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNP--- 77
Query: 153 TRCVQIRNWFD---YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                I N+ D     + + +V E L G SL D + +       I  V    R+ L+++ 
Sbjct: 78  ----NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAV---CRECLQALE 130
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           F+H  ++IH D+K +NILL                   DGS          +KL DFG  
Sbjct: 131 FLHSNQVIHRDIKSDNILL-----------------GMDGS----------VKLTDFGFC 163
Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
              T E    S +V T ++ APEV+    +    D+WS+G + +E+  GE
Sbjct: 164 AQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 213

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 28  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 86
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 87  PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 144
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 145 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 182
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 183 -----TLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 220

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 44/230 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           +Y    K+G+G  G V    D    + VAI+ +    + ++  +I   ++ R  ++    
Sbjct: 22  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNP--- 78
Query: 153 TRCVQIRNWFD---YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                I N+ D     + + +V E L G SL D + +       I  V    R+ L+++ 
Sbjct: 79  ----NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAV---CRECLQALE 131
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           F+H  ++IH D+K +NILL                   DGS          +KL DFG  
Sbjct: 132 FLHSNQVIHRDIKSDNILL-----------------GMDGS----------VKLTDFGFC 164
Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
              T E    S +V T ++ APEV+    +    D+WS+G + +E+  GE
Sbjct: 165 AQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 214

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 128/338 (37%), Gaps = 82/338 (24%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDIG 151
           Y +   +G+G F  V  C + E  +  A+KIV  + K+  +  +  + L+R A   H + 
Sbjct: 28  YELCEVIGKGPFSVVRRCINRETGQQFAVKIV-DVAKFTSSPGLSTEDLKREASICHMLK 86
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID--LVRELGRQLLESVA 208
               V++   +     + +VFE + G  L   + K +   F     +     RQ+LE++ 
Sbjct: 87  HPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALR 146
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           + H+  +IH D+KP  +LL S E                         S+ +KL  FG  
Sbjct: 147 YCHDNNIIHRDVKPHCVLLASKE------------------------NSAPVKLGGFG-V 181
Query: 269 TFEHQDHSYV----VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
             +  +   V    V T H+ APEV+    +  P D+W  G IL  L S           
Sbjct: 182 AIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLS----------- 230
Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
                     G LP +                       G   R     +    ++    
Sbjct: 231 ----------GCLPFY-----------------------GTKERLFEGIIKGKYKMNPRQ 257
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             H+  SA DL+   + +L  DPAER+   EAL HP+ 
Sbjct: 258 WSHISESAKDLV---RRMLMLDPAERITVYEALNHPWL 292

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 44/230 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           +Y    K+G+G  G V    D    + VAI+ +    + ++  +I   ++ R  ++    
Sbjct: 21  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNP--- 77
Query: 153 TRCVQIRNWFD---YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                I N+ D     + + +V E L G SL D + +       I  V    R+ L+++ 
Sbjct: 78  ----NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAV---CRECLQALE 130
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           F+H  ++IH D+K +NILL                   DGS          +KL DFG  
Sbjct: 131 FLHSNQVIHRDIKSDNILL-----------------GMDGS----------VKLTDFGFC 163
Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
              T E    S +V T ++ APEV+    +    D+WS+G + +E+  GE
Sbjct: 164 AQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 213

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 29/230 (12%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           ++ +G+G FGQVV+  +       AIK +R   +     + E+ +L  L    +      
Sbjct: 11  IAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAA 70
Query: 157 QIRNWFDYRNHI---------CIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQL 203
               W + RN +           +F ++      +LYD +   +      +  R L RQ+
Sbjct: 71  ----WLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWR-LFRQI 125
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           LE+++++H   +IH DLKP NI +  +  VK+ D+             KN+ +S  I  +
Sbjct: 126 LEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLA----------KNVHRSLDILKL 175
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELC 312
           D  +      + +  + T  Y A EV+ G G +N   D++S+G I  E+ 
Sbjct: 176 DSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI 225

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    + P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFAEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 128/338 (37%), Gaps = 82/338 (24%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDIG 151
           Y +   +G+G F  V  C + E  +  A+KIV  + K+  +  +  + L+R A   H + 
Sbjct: 26  YELCEVIGKGPFSVVRRCINRETGQQFAVKIV-DVAKFTSSPGLSTEDLKREASICHMLK 84
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID--LVRELGRQLLESVA 208
               V++   +     + +VFE + G  L   + K +   F     +     RQ+LE++ 
Sbjct: 85  HPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALR 144
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           + H+  +IH D+KP  +LL S E                         S+ +KL  FG  
Sbjct: 145 YCHDNNIIHRDVKPHCVLLASKE------------------------NSAPVKLGGFG-V 179
Query: 269 TFEHQDHSYV----VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
             +  +   V    V T H+ APEV+    +  P D+W  G IL  L S           
Sbjct: 180 AIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLS----------- 228
Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
                     G LP +                       G   R     +    ++    
Sbjct: 229 ----------GCLPFY-----------------------GTKERLFEGIIKGKYKMNPRQ 255
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             H+  SA DL+   + +L  DPAER+   EAL HP+ 
Sbjct: 256 WSHISESAKDLV---RRMLMLDPAERITVYEALNHPWL 290

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ ++ +G
Sbjct: 197 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYQMAAG 234

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 49/232 (21%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI   ++K +   + +I+       H +  
Sbjct: 43  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKI---LDKQKVVKLKQIE-------HTLNE 92
Query: 153 TRCVQIRNW---------FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQ 202
            R +Q  N+         F   +++ +V E   G  ++  LR+    S P    R    Q
Sbjct: 93  KRILQAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEP--HARFYAAQ 150
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           ++ +  ++H L LI+ DLKPEN+++    Y+KV D+ F  R                   
Sbjct: 151 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVK----------------- 193
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
              G T         +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 194 ---GRTW-------XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 29/230 (12%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           ++ +G+G FGQVV+  +       AIK +R   +     + E+ +L  L    +      
Sbjct: 11  IAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAA 70
Query: 157 QIRNWFDYRNHI---------CIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQL 203
               W + RN +           +F ++      +LYD +   +      +  R L RQ+
Sbjct: 71  ----WLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQRDEYWR-LFRQI 125
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           LE+++++H   +IH DLKP NI +  +  VK+ D+             KN+ +S  I  +
Sbjct: 126 LEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLA----------KNVHRSLDILKL 175
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELC 312
           D  +      + +  + T  Y A EV+ G G +N   D++S+G I  E+ 
Sbjct: 176 DSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI 225

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 49/232 (21%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI   ++K +   + +I+       H +  
Sbjct: 43  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKI---LDKQKVVKLKQIE-------HTLNE 92
Query: 153 TRCVQIRNW---------FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQ 202
            R +Q  N+         F   +++ +V E   G  ++  LR+    S P    R    Q
Sbjct: 93  KRILQAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEP--HARFYAAQ 150
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           ++ +  ++H L LI+ DLKPEN+++    Y+KV D+ F  R                   
Sbjct: 151 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVK----------------- 193
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
              G T         +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 194 ---GRTW-------XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 44/230 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           +Y    K+G+G  G V    D    + VAI+ +    + ++  +I   ++ R  ++    
Sbjct: 21  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNP--- 77
Query: 153 TRCVQIRNWFD---YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                I N+ D     + + +V E L G SL D + +       I  V    R+ L+++ 
Sbjct: 78  ----NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAV---CRECLQALE 130
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           F+H  ++IH D+K +NILL                   DGS          +KL DFG  
Sbjct: 131 FLHSNQVIHRDIKSDNILL-----------------GMDGS----------VKLTDFGFC 163
Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
              T E    S +V T ++ APEV+    +    D+WS+G + +E+  GE
Sbjct: 164 AQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 213

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 35  QFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 93
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+     F     R    Q++ +  ++H
Sbjct: 94  PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLH 151
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 152 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 189
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 190 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 227

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 133/318 (41%), Gaps = 43/318 (13%)
Query: 84  FAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMI---EI 139
            AI +     Y I   +GEG+FG+V      + ++ VA+K I R + K  +  M    EI
Sbjct: 1   MAISKRHIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREI 60
Query: 140 DVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
             L +L RH       +++ +       I +V E  G  L+D++ +   +    D  R  
Sbjct: 61  SYL-KLLRH----PHIIKLYDVITTPTDIVMVIEYAGGELFDYIVEK--KRMTEDEGRRF 113
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q++ ++ + H  +++H DLKPEN+LL     VK+ D+  LS    DG++ K       
Sbjct: 114 FQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFG-LSNIMTDGNFLKT------ 166
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALF 318
                                + +Y APEVI G  +  P  D+WS G +L  +  G   F
Sbjct: 167 ------------------SCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPF 208
Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
                 E +  + + +    + M       A+   RR    D     T ++  R  W  +
Sbjct: 209 DD----EFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNV 264
Query: 379 RLPNLI--MQHVDHSAGD 394
            LP+ +  M+ V  S  D
Sbjct: 265 NLPDYLRPMEEVQGSYAD 282

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 96/234 (41%), Gaps = 36/234 (15%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           RY ++  +G G FG      D +  ELVA+K +    K  E    EI +  R  RH    
Sbjct: 20  RYELVKDIGAGNFGVARLMRDKQANELVAVKYIERGEKIDENVKREI-INHRSLRH---- 74
Query: 153 TRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V+ +       H+ IV E   G  L++  R  +   F  D  R   +QL+  V++ H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFE--RICNAGRFSEDEARFFFQQLISGVSYAH 132
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG--STT 269
            +++ H DLK EN LL                   DGS       +  +K+ DFG    +
Sbjct: 133 AMQVAHRDLKLENTLL-------------------DGS------PAPRLKIADFGYSKAS 167
Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHE 322
             H      V T  Y APEV+L   ++    D+WS G  L  +  G   F+  E
Sbjct: 168 VLHSQPKSAVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPE 221

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 134/344 (38%), Gaps = 75/344 (21%)
Query: 94  YRILSKM-GEGTFGQVVECFDNEKKELVAIKIV-RSINKYREAAMIEIDVLQRLARHDIG 151
           Y++ S++ GEG + +V      +  +  A+KI+ +     R     E++ L +      G
Sbjct: 14  YKLTSELLGEGAYAKVQGAVSLQNGKEYAVKIIEKQAGHSRSRVFREVETLYQCQ----G 69
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               +++  +F+      +VFEKL G S+   ++K  +  F       + R +  ++ F+
Sbjct: 70  NKNILELIEFFEDDTRFYLVFEKLQGGSILAHIQKQKH--FNEREASRVVRDVAAALDFL 127
Query: 211 HELRLIHTDLKPENILLVSAEY---VKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
           H   + H DLKPENIL  S E    VK+ D+                   S +KL +   
Sbjct: 128 HTKGIAHRDLKPENILCESPEKVSPVKICDFDL----------------GSGMKL-NNSC 170
Query: 268 TTFEHQDHSYVVSTRHYRAPEVI-----LGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           T     + +    +  Y APEV+         ++  CDLWS+G +L  + SG   F  H 
Sbjct: 171 TPITTPELTTPCGSAEYMAPEVVEVFTDQATFYDKRCDLWSLGVVLYIMLSGYPPFVGH- 229
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR--- 379
                                            GA   W  G   R     +++ ++   
Sbjct: 230 --------------------------------CGADCGWDRGEVCRVCQNKLFESIQEGK 257
Query: 380 --LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
              P+    H+   A DLI     LL  D  +RL A + L+HP+
Sbjct: 258 YEFPDKDWAHISSEAKDLIS---KLLVRDAKQRLSAAQVLQHPW 298

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 67  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 125
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+     F     R    Q++ +  ++H L L
Sbjct: 126 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLHSLDL 183
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 184 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 217
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 218 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 255

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 41  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 99
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+     F     R    Q++ +  ++H L L
Sbjct: 100 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLHSLDL 157
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 158 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 191
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 192 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 229

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+     F     R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+     F     R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 35/241 (14%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+GEG+ G V    +    + VA+K +    + R   +    V+ R   HD      V +
Sbjct: 52  KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHD----NVVDM 107
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
            + +   + + +V E L G +L D +         I  V      +L +++++H   +IH
Sbjct: 108 YSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATV---CLSVLRALSYLHNQGVIH 164
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            D+K ++ILL S   +K+ D+ F ++ SK+      +PK   +                 
Sbjct: 165 RDIKSDSILLTSDGRIKLSDFGFCAQVSKE------VPKRKXL----------------- 201
Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
            V T ++ APEVI  L +    D+WS+G +++E+  GE     + N   L  M R+   L
Sbjct: 202 -VGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEP---PYFNEPPLQAMRRIRDSL 257
Query: 338 P 338
           P
Sbjct: 258 P 258

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 106/232 (45%), Gaps = 38/232 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH-DIGG 152
           + ++  +G GT+GQV +    +  +L AIK++       E    EI++L++ + H +I  
Sbjct: 26  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIAT 85
Query: 153 TRCVQIR-NWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                I+ N     + + +V E  G  S+ D ++     +   + +  + R++L  ++ +
Sbjct: 86  YYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHL 145
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H+ ++IH D+K +N+LL                            +++ +KL+DFG +  
Sbjct: 146 HQHKVIHRDIKGQNVLLT---------------------------ENAEVKLVDFGVSAQ 178
Query: 271 EHQD---HSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSG 314
             +     +  + T ++ APEVI         +++  DLWS+G   +E+  G
Sbjct: 179 LDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEG 230

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 97/234 (41%), Gaps = 36/234 (15%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           RY ++  +G G FG      D +  ELVA+K +    K  E    EI +  R  RH    
Sbjct: 19  RYELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKIDENVKREI-INHRSLRH---- 73
Query: 153 TRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V+ +       H+ IV E   G  L++  R  +   F  D  R   +QL+  V++ H
Sbjct: 74  PNIVRFKEVILTPTHLAIVMEYASGGELFE--RICNAGRFSEDEARFFFQQLISGVSYCH 131
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG--STT 269
            +++ H DLK EN LL                   DGS       +  +K+ DFG   ++
Sbjct: 132 AMQVCHRDLKLENTLL-------------------DGS------PAPRLKICDFGYSKSS 166
Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHE 322
             H      V T  Y APEV+L   ++    D+WS G  L  +  G   F+  E
Sbjct: 167 VLHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPE 220

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+++    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLIIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+I+  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEYLAPEIIISKGYNKAVDWWALGVLIYEMAAG 234

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+     F     R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E   G  ++  LR+    S P    R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+++    Y++V D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLMIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 43  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 101
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+     F     R    Q++ +  ++H
Sbjct: 102 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLH 159
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 160 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 197
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 198 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T  Y AP +IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEYLAPAIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+     F     R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E + G  ++  LR+     F     R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+L+    Y++V D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant Length = 483

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 28/231 (12%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++R+  K+G G+FG++    + +  E VAIK+     K+ +  + E  + + L     GG
Sbjct: 8   KFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQL-LYESKIYRILQ----GG 62
Query: 153 TRCVQIRNWFDYR-NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
           T    +R WF    ++  +V + LGPSL D     S R   +  V  L  Q++  V F+H
Sbjct: 63  TGIPNVR-WFGVEGDYNVLVMDLLGPSLEDLFNFCS-RKLSLKTVLMLADQMINRVEFVH 120
Query: 212 ELRLIHTDLKPENILLV---SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
               +H D+KP+N L+     A  V + D+  L++  +D S  +++P             
Sbjct: 121 SKSFLHRDIKPDNFLMGLGRRANQVYIIDFG-LAKKYRDTSTHQHIP------------- 166
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
              ++++  +  T  Y +    LG+  +   DL S+G +L+    G   +Q
Sbjct: 167 ---YRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQ 214

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 31/223 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNF 100
Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V++   F   +++ +V E   G  ++  LR+     F     R    Q++ +  ++H
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFXEPHARFYAAQIVLTFEYLH 158
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            L LI+ DLKPEN+++    Y+KV D+ F  R                      G T   
Sbjct: 159 SLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVK--------------------GRTW-- 196
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                 +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -----XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 45/227 (19%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDIG--- 151
           L K+G+G+FG+V +  DN  +++VAIKI+         E    EI VL +     +    
Sbjct: 27  LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 86
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID--LVRELGRQLLESVA 208
           G+     + W        I+ E L G S  D L        P+D   +  + R++L+ + 
Sbjct: 87  GSYLKDTKLW--------IIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLD 133
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H  + IH D+K  N+LL     VK+ D+                           G  
Sbjct: 134 YLHSEKKIHRDIKAANVLLSEHGEVKLADFGVA------------------------GQL 169
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
           T      +  V T  + APEVI    ++   D+WS+G   +EL  GE
Sbjct: 170 TDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGE 216

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 129/289 (44%), Gaps = 59/289 (20%)
Query: 48  GNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGENLTPR--YRILSKMGEGTF 105
           GN G+    C  +   ++P   S P +P +KD   +        PR   ++  K+G G F
Sbjct: 151 GNDGL----CQKL---SVPCMSSKPQKPWEKDAWEI--------PRESLKLEKKLGAGQF 195
Query: 106 GQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR 165
           G+V     N K   VA+K ++  +   EA + E +V++ L +HD    + V++      +
Sbjct: 196 GEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTL-QHD----KLVKLHAVVT-K 248
Query: 166 NHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPEN 224
             I I+ E +   SL DFL+ +     P+  + +   Q+ E +AF+ +   IH DL+  N
Sbjct: 249 EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAAN 308
Query: 225 ILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHY 284
           IL+ ++   K+ D+      ++ G+ F    K +A + I+FGS T +             
Sbjct: 309 ILVSASLVCKIADFGL----ARVGAKFP--IKWTAPEAINFGSFTIK------------- 349
Query: 285 RAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                          D+WS G +L+E+ + G   +    N E +  +ER
Sbjct: 350 --------------SDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALER 384

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 49/232 (21%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI   ++K +   + EI+       H +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKI---LDKQKVVKLKEIE-------HTLNE 91
Query: 153 TRCVQIRNW---------FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQ 202
            R +Q  N+         F   +++ +V E   G  ++  LR+    S P    R    Q
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEP--HARFYAAQ 149
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           ++ +  ++H L LI+ DLKPEN+++    Y+KV D+    R                   
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGLAKRVK----------------- 192
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
              G T         +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 193 ---GRTW-------XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 44/230 (19%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           +Y    K+G+G  G V    D    + VAI+ +    + ++  +I   ++ R  ++    
Sbjct: 22  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNP--- 78
Query: 153 TRCVQIRNWFD---YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                I N+ D     + + +V E L G SL D + +       I  V    R+ L+++ 
Sbjct: 79  ----NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAV---CRECLQALE 131
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           F+H  ++IH ++K +NILL                   DGS          +KL DFG  
Sbjct: 132 FLHSNQVIHRNIKSDNILL-----------------GMDGS----------VKLTDFGFC 164
Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
              T E    S +V T ++ APEV+    +    D+WS+G + +E+  GE
Sbjct: 165 AQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE 214

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 39/224 (17%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDIGGTR 154
           L K+G+G+FG+V +  DN  +++VAIKI+         E    EI VL +     +    
Sbjct: 12  LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 71
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID--LVRELGRQLLESVAFMH 211
              +++       + I+ E L G S  D L        P+D   +  + R++L+ + ++H
Sbjct: 72  GSYLKD-----TKLWIIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLDYLH 121
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
             + IH D+K  N+LL     VK+ D+                           G  T  
Sbjct: 122 SEKKIHRDIKAANVLLSEHGEVKLADFGVA------------------------GQLTDT 157
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
               +  V T  + APEVI    ++   D+WS+G   +EL  GE
Sbjct: 158 QIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGE 201

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 49/232 (21%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI   ++K +   + +I+       H +  
Sbjct: 43  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKI---LDKQKVVKLKQIE-------HTLNE 92
Query: 153 TRCVQIRNW---------FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQ 202
            R +Q  N+         F   +++ +V E   G  ++  LR+     F     R    Q
Sbjct: 93  KRILQAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIG--RFXEPHARFYAAQ 150
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           ++ +  ++H L LI+ DLKPEN+++    Y+KV D+ F  R                   
Sbjct: 151 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVK----------------- 193
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
              G T         +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 194 ---GRTW-------XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 39/224 (17%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDIGGTR 154
           L K+G+G+FG+V +  DN  +++VAIKI+         E    EI VL +     +    
Sbjct: 12  LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 71
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID--LVRELGRQLLESVAFMH 211
              +++       + I+ E L G S  D L        P+D   +  + R++L+ + ++H
Sbjct: 72  GSYLKD-----TKLWIIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLDYLH 121
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
             + IH D+K  N+LL     VK+ D+                           G  T  
Sbjct: 122 SEKKIHRDIKAANVLLSEHGEVKLADFGVA------------------------GQLTDT 157
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
               +  V T  + APEVI    ++   D+WS+G   +EL  GE
Sbjct: 158 QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGE 201

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 45/227 (19%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDIG--- 151
           L K+G+G+FG+V +  DN  +++VAIKI+         E    EI VL +     +    
Sbjct: 32  LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 91
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID--LVRELGRQLLESVA 208
           G+     + W        I+ E L G S  D L        P+D   +  + R++L+ + 
Sbjct: 92  GSYLKDTKLW--------IIMEYLGGGSALDLLEPG-----PLDETQIATILREILKGLD 138
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H  + IH D+K  N+LL     VK+ D+                           G  
Sbjct: 139 YLHSEKKIHRDIKAANVLLSEHGEVKLADFGVA------------------------GQL 174
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
           T      +  V T  + APEVI    ++   D+WS+G   +EL  GE
Sbjct: 175 TDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGE 221

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 31/219 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           +  +G G+FG+V+     E     A+KI+    K  +   IE  + ++     +     V
Sbjct: 46  IKTLGTGSFGRVMLVKHKESGNHYAMKILDK-QKVVKLKQIEHTLNEKRILQAVNFPFLV 104
Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F   +++ +V E + G  ++  LR+    S P    R    Q++ +  ++H L L
Sbjct: 105 KLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEP--HARFYAAQIVLTFEYLHSLDL 162
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           I+ DLKPEN+L+    Y++V D+ F  R                      G T       
Sbjct: 163 IYRDLKPENLLIDQQGYIQVTDFGFAKRVK--------------------GRTW------ 196
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
             +  T    APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 197 -XLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 96/234 (41%), Gaps = 36/234 (15%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           RY ++  +G G FG      D +  ELVA+K +    K       EI +  R  RH    
Sbjct: 20  RYELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKIAANVKREI-INHRSLRH---- 74
Query: 153 TRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V+ +       H+ IV E   G  L++  R  +   F  D  R   +QL+  V++ H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFE--RICNAGRFSEDEARFFFQQLISGVSYCH 132
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG--STT 269
            +++ H DLK EN LL                   DGS       +  +K+ DFG   ++
Sbjct: 133 AMQVCHRDLKLENTLL-------------------DGS------PAPRLKICDFGYSKSS 167
Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHE 322
             H      V T  Y APEV+L   ++    D+WS G  L  +  G   F+  E
Sbjct: 168 VLHSQPKSTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPE 221

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 102/248 (41%), Gaps = 37/248 (14%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           RY  +  +G G FG      D   KELVA+K +       E    EI +  R  RH    
Sbjct: 21  RYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREI-INHRSLRH---- 75
Query: 153 TRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V+ +       H+ I+ E   G  LY+  R  +   F  D  R   +QLL  V++ H
Sbjct: 76  PNIVRFKEVILTPTHLAIIMEYASGGELYE--RICNAGRFSEDEARFFFQQLLSGVSYCH 133
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG--STT 269
            +++ H DLK EN LL                   DGS       +  +K+ DFG   ++
Sbjct: 134 SMQICHRDLKLENTLL-------------------DGS------PAPRLKICDFGYSKSS 168
Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQT-HENLEHL 327
             H      V T  Y APEV+L   ++    D+WS G  L  +  G   F+   E  ++ 
Sbjct: 169 VLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYR 228
Query: 328 AMMERVLG 335
             ++R+L 
Sbjct: 229 KTIQRILS 236

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 49/232 (21%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           ++  +  +G G+FG+V+     E     A+KI   ++K +   + EI+       H +  
Sbjct: 42  QFERIKTLGTGSFGRVMLVKHMETGNHYAMKI---LDKQKVVKLKEIE-------HTLNE 91
Query: 153 TRCVQIRNW---------FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQ 202
            R +Q  N+         F   +++ +V E   G  ++  LR+    S P    R    Q
Sbjct: 92  KRILQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLRRIGRFSEP--HARFYAAQ 149
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           ++ +  ++H L LI+ DLKPEN+++    Y++V D+    R                   
Sbjct: 150 IVLTFEYLHSLDLIYRDLKPENLMIDQQGYIQVTDFGLAKRVK----------------- 192
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
              G T         +  T  Y APE+IL  G+N   D W++G ++ E+ +G
Sbjct: 193 ---GRTW-------XLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           ++  K+G G FG+V     N K   VA+K ++  +   EA + E +V++ L +HD    +
Sbjct: 18  KLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTL-QHD----K 71
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V++      +  I I+ E +   SL DFL+ +     P+  + +   Q+ E +AF+ + 
Sbjct: 72  LVKLHAVVT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR 130
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+ ++   K+ D+  L+R  +D  Y         IK            
Sbjct: 131 NYIHRDLRAANILVSASLVCKIADFG-LARVIEDNEYTAREGAKFPIK------------ 177
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L+E+ + G   +    N E +  +ER
Sbjct: 178 ----------WTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALER 227

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 131/336 (38%), Gaps = 82/336 (24%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDV-LQRLARHDIG 151
           Y++  ++G+G F  V  C      +  A KI+ +     R+   +E +  + RL +H   
Sbjct: 24  YQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREARICRLLKH--- 80
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               V++ +      H  ++F+ + G  L++ +    Y S   D    + +Q+LE+V   
Sbjct: 81  -PNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYS-EADASHCI-QQILEAVLHC 137
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG---S 267
           H++ ++H DLKPEN+LL S                          K +A+KL DFG    
Sbjct: 138 HQMGVVHRDLKPENLLLASK------------------------LKGAAVKLADFGLAIE 173
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
              E Q       T  Y +PEV+    +  P DLW+ G IL  L  G   F   +     
Sbjct: 174 VEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ---- 229
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
                               R  +  + GA  D+P            W            
Sbjct: 230 -------------------HRLYQQIKAGA-YDFPSPE---------W------------ 248
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
            D    +  DL+  +L  +P++R+ A EAL+HP+ +
Sbjct: 249 -DTVTPEAKDLINKMLTINPSKRITAAEALKHPWIS 283

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 94/232 (40%), Gaps = 32/232 (13%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           RY ++  +G G FG      D +  ELVA+K +    K  E    EI +  R  RH    
Sbjct: 20  RYELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKIDENVKREI-INHRSLRH---- 74
Query: 153 TRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V+ +       H+ IV E   G  L++  R  +   F  D  R   +QL+  V++ H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFE--RICNAGRFSEDEARFFFQQLISGVSYCH 132
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
            +++ H DLK EN LL  +     P  K  +      S   + PKS+             
Sbjct: 133 AMQVCHRDLKLENTLLDGS---PAPRLKICAFGYSKSSVLHSQPKST------------- 176
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHE 322
                  V T  Y APEV+L   ++    D+WS G  L  +  G   F+  E
Sbjct: 177 -------VGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPE 221

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 127/341 (37%), Gaps = 85/341 (24%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH 148
             T  Y +   +G G++     C         A+KI   I+K +     EI++L R  +H
Sbjct: 19  QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKI---IDKSKRDPTEEIEILLRYGQH 75
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLL--- 204
                  + +++ +D   ++ +V E + G  L D + +  + S      RE    L    
Sbjct: 76  ----PNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFS-----EREASAVLFTIT 126
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           ++V ++H   ++H DLKP NIL                       Y        +I++ D
Sbjct: 127 KTVEYLHAQGVVHRDLKPSNIL-----------------------YVDESGNPESIRICD 163
Query: 265 FGSTTFEHQDHSYVVS---TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
           FG       ++  +++   T ++ APEV+   G++  CD+WS+G +L  + +G   F   
Sbjct: 164 FGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFAN- 222
Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
                        GP         D   E+   R     +       +S+    K     
Sbjct: 223 -------------GP---------DDTPEEILARIGSGKFSLSGGYWNSVSDTAK----- 255
Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                          DL+  +L  DP +RL A   LRHP+ 
Sbjct: 256 ---------------DLVSKMLHVDPHQRLTAALVLRHPWI 281

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 135/337 (40%), Gaps = 80/337 (23%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+GEG+ G V    +      VA+K++    + R   +    V+ R  +H       V++
Sbjct: 52  KIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQH----FNVVEM 107
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
              +     + ++ E L G +L D + +       I  V E    +L+++A++H   +IH
Sbjct: 108 YKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCE---AVLQALAYLHAQGVIH 164
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY 277
            D+K ++ILL     VK+ D+ F ++ SKD      +PK   +                 
Sbjct: 165 RDIKSDSILLTLDGRVKLSDFGFCAQISKD------VPKRKXL----------------- 201
Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPL 337
            V T ++ APEVI    +    D+WS+G +++E+  GE                      
Sbjct: 202 -VGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEP--------------------- 239
Query: 338 PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID 397
                         YF             S   ++A+ +L   P   +++    +  L D
Sbjct: 240 -------------PYF-------------SDSPVQAMKRLRDSPPPKLKNSHKVSPVLRD 273
Query: 398 LLQGLLRYDPAERLKAREALRHPFFTRD-VRRCGFPL 433
            L+ +L  DP ER  A+E L HPF  +  +  C  PL
Sbjct: 274 FLERMLVRDPQERATAQELLDHPFLLQTGLPECLVPL 310

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 26  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 84
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 85  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 138
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D  Y         IK            
Sbjct: 139 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEYTAREGAKFPIK------------ 185
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 186 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 235
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 236 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 273

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 96/234 (41%), Gaps = 36/234 (15%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           RY ++  +G G FG      D +  ELVA+K +    K  E    EI +  R  RH    
Sbjct: 20  RYELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKIDENVKREI-INHRSLRH---- 74
Query: 153 TRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              V+ +       H+ IV E   G  L++  R  +   F  D  R   +QL+  V++ H
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFE--RICNAGRFSEDEARFFFQQLISGVSYCH 132
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG--STT 269
            +++ H DLK EN LL                   DGS       +  +K+  FG   ++
Sbjct: 133 AMQVCHRDLKLENTLL-------------------DGS------PAPRLKICAFGYSKSS 167
Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHE 322
             H      V T  Y APEV+L   ++    D+WS G  L  +  G   F+  E
Sbjct: 168 VLHSQPKDTVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFEDPE 221

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 22  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 80
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 81  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 134
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D  Y         IK            
Sbjct: 135 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEYTAREGAKFPIK------------ 181
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 182 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 231
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 232 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 269

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 29/228 (12%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           ++ +G+G FGQVV+  +       AIK +R   +     + E+ +L  L    +      
Sbjct: 11  IAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVXLLASLNHQYVVRYYAA 70
Query: 157 QIRNWFDYRNHI---------CIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQL 203
               W + RN +           +F +       +LYD +   +      +  R L RQ+
Sbjct: 71  ----WLERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHSENLNQQRDEYWR-LFRQI 125
Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           LE+++++H   +IH +LKP NI +  +  VK+ D+             KN+ +S  I  +
Sbjct: 126 LEALSYIHSQGIIHRNLKPXNIFIDESRNVKIGDFGLA----------KNVHRSLDILKL 175
Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVE 310
           D  +      + +  + T  Y A EV+ G G +N   D +S+G I  E
Sbjct: 176 DSQNLPGSSDNLTSAIGTAXYVATEVLDGTGHYNEKIDXYSLGIIFFE 223

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 21  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 79
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 80  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 133
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D  Y         IK            
Sbjct: 134 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEYTAREGAKFPIK------------ 180
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 181 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 230
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 231 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 268

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 16  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 74
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 75  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 128
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D  Y         IK            
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEYTAREGAKFPIK------------ 175
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 176 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 225
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 226 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 263

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 108/239 (45%), Gaps = 37/239 (15%)
Query: 83  VFAIGENLT-PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV 141
           VF   E++    + IL  +G+G+FG+V     N+ K++ A+K    +NK +     E+  
Sbjct: 5   VFDENEDVNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKY---MNKQKCVERNEVRN 61
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNH---ICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE 198
           + +  +   G      +  W+ +++      +V   LG  L   L++N +  F  + V+ 
Sbjct: 62  VFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVH--FKEETVKL 119
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              +L+ ++ ++   R+IH D+KP+NILL    +V + D+   +           LP+ +
Sbjct: 120 FICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAM----------LPRET 169
Query: 259 AIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELCSG 314
            I               + +  T+ Y APE+     G G+++  D WS+G    EL  G
Sbjct: 170 QI---------------TTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRG 213

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 128/342 (37%), Gaps = 82/342 (23%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDV-LQRLA 146
           ++T  Y++  ++G+G F  V  C      +  A KI+ +     R+   +E +  + RL 
Sbjct: 1   SMTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLL 60
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           +H       V++ +         +VF+ + G  L++ +    Y S          +Q+LE
Sbjct: 61  KH----PNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEAD--ASHCIQQILE 114
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           SV   H   ++H DLKPEN+LL S                          K +A+KL DF
Sbjct: 115 SVNHCHLNGIVHRDLKPENLLLASKS------------------------KGAAVKLADF 150
Query: 266 GSTTFEHQDHSY---VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           G       D         T  Y +PEV+    +  P D+W+ G IL  L  G   F   +
Sbjct: 151 GLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDED 210
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
                                    R  +  + GA  D+P            W       
Sbjct: 211 Q-----------------------HRLYQQIKAGA-YDFPSPE---------W------- 230
Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                 D    +  DL+  +L  +PA+R+ A EAL+HP+  +
Sbjct: 231 ------DTVTPEAKDLINKMLTINPAKRITASEALKHPWICQ 266

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 130/342 (38%), Gaps = 82/342 (23%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDV-LQRLA 146
           ++T  Y++  ++G+G F  V  C      +  A KI+ +     R+   +E +  + RL 
Sbjct: 1   SMTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLL 60
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           +H       V++ +         +VF+ + G  L++ +    Y S   D    + +Q+LE
Sbjct: 61  KH----PNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYS-EADASHCI-QQILE 114
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           SV   H   ++H DLKPEN+LL S                          K +A+KL DF
Sbjct: 115 SVNHCHLNGIVHRDLKPENLLLASKS------------------------KGAAVKLADF 150
Query: 266 GSTTFEHQDHSY---VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           G       D         T  Y +PEV+    +  P D+W+ G IL  L  G   F   +
Sbjct: 151 GLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWDED 210
Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
                                    R  +  + GA  D+P            W       
Sbjct: 211 Q-----------------------HRLYQQIKAGA-YDFPSPE---------W------- 230
Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                 D    +  DL+  +L  +PA+R+ A EAL+HP+  +
Sbjct: 231 ------DTVTPEAKDLINKMLTINPAKRITASEALKHPWICQ 266

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 11  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 69
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 70  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 123
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D  Y         IK            
Sbjct: 124 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEYTAREGAKFPIK------------ 170
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 171 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 220
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 221 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 258

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 114/267 (42%), Gaps = 61/267 (22%)
Query: 85  AIGENLTP---RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEID- 140
           A+G +  P    YR+L  +G+G F +V              K+ R I   RE A+  ID 
Sbjct: 2   AMGSDEQPHIGNYRLLKTIGKGNFAKV--------------KLARHILTGREVAIKIIDK 47
Query: 141 ------VLQRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSY 188
                  LQ+L R       +     V++    +    + ++ E   G  ++D+L   ++
Sbjct: 48  TQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLV--AH 105
Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
                   R   RQ++ +V + H+ R++H DLK EN+LL +   +K+ D+ F +  +  G
Sbjct: 106 GRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG 165
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCI 307
                       KL  F               +  Y APE+  G  ++ P  D+WS+G I
Sbjct: 166 ------------KLDTF-------------CGSPPYAAPELFQGKKYDGPEVDVWSLGVI 200
Query: 308 LVELCSGEALFQTHENLEHLAMMERVL 334
           L  L SG   F   +NL+ L   ERVL
Sbjct: 201 LYTLVSGSLPFDG-QNLKELR--ERVL 224

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 31/226 (13%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           ++IL  +G G+FG+V            A+K+++     R    +E    +RL    +   
Sbjct: 8   FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVR-LKQVEHTNDERLMLSIVTHP 66
Query: 154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
             +++   F     I ++ + + G  L+  LRK+  + FP  + +    ++  ++ ++H 
Sbjct: 67  FIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLHS 124
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
             +I+ DLKPENILL                            K+  IK+ DFG   +  
Sbjct: 125 KDIIYRDLKPENILL---------------------------DKNGHIKITDFGFAKYVP 157
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
                +  T  Y APEV+    +N   D WS G ++ E+ +G   F
Sbjct: 158 DVTYXLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPF 203

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 44/238 (18%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH 148
             T  Y +   +G G++     C         A+KI   I+K +     EI++L R  +H
Sbjct: 19  QFTDGYEVKEDIGVGSYSVCKRCIHKATNXEFAVKI---IDKSKRDPTEEIEILLRYGQH 75
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLL-- 204
                  + +++ +D   ++ +V E  K G  L   LR+  +        RE    L   
Sbjct: 76  ----PNIITLKDVYDDGKYVYVVTELXKGGELLDKILRQKFFSE------REASAVLFTI 125
Query: 205 -ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
            ++V ++H   ++H DLKP NIL                       Y        +I++ 
Sbjct: 126 TKTVEYLHAQGVVHRDLKPSNIL-----------------------YVDESGNPESIRIC 162
Query: 264 DFGSTTFEHQDHSYVVS---TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
           DFG       ++  + +   T ++ APEV+   G++  CD+WS+G +L    +G   F
Sbjct: 163 DFGFAKQLRAENGLLXTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTXLTGYTPF 220

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 99/232 (42%), Gaps = 41/232 (17%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIGGTRCVQ 157
           +G G FG V E  +       AIK +R  N+   RE  M E+  L +L    I     V+
Sbjct: 13  LGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGI-----VR 67
Query: 158 IRNWFDYRNHICIVFEKLGPS---LYDFLRKNSYRSFPID-------LVRELGR------ 201
             N +  +N      EKL PS   +Y +++    R   +         + E  R      
Sbjct: 68  YFNAWLEKNTT----EKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHI 123
Query: 202 --QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+ E+V F+H   L+H DLKP NI     + VKV D+  ++   +D      L    A
Sbjct: 124 FLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPA 183
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                       +  H+  V T+ Y +PE I G  +++  D++S+G IL EL
Sbjct: 184 ------------YARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFEL 223

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 37/241 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + I+  +G G FG+V        + + A+KI   +NK+      E     R  R  +   
Sbjct: 76  FEIIKVIGRGAFGEVAVVKMKNTERIYAMKI---LNKWEMLKRAETACF-REERDVLVNG 131
Query: 154 RCVQIRNW---FDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
            C  I      F   NH+ +V +  +G  L   L K   +  P D+ R    +++ ++  
Sbjct: 132 DCQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDK-LPEDMARFYIGEMVLAIDS 190
Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H+L  +H D+KP+N+LL    ++++ D+                   S +K+ D G+  
Sbjct: 191 IHQLHYVHRDIKPDNVLLDVNGHIRLADF------------------GSCLKMNDDGTVQ 232
Query: 270 FEHQDHSYVVSTRHYRAPEVIL----GLGWNYP-CDLWSVGCILVELCSGEALFQTHENL 324
                 S  V T  Y +PE++     G+G   P CD WS+G  + E+  GE  F     +
Sbjct: 233 -----SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLV 287
Query: 325 E 325
           E
Sbjct: 288 E 288

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 37/241 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + I+  +G G FG+V        + + A+KI   +NK+      E     R  R  +   
Sbjct: 92  FEIIKVIGRGAFGEVAVVKMKNTERIYAMKI---LNKWEMLKRAETACF-REERDVLVNG 147
Query: 154 RCVQIRNW---FDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
            C  I      F   NH+ +V +  +G  L   L K   +  P D+ R    +++ ++  
Sbjct: 148 DCQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDK-LPEDMARFYIGEMVLAIDS 206
Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H+L  +H D+KP+N+LL    ++++ D+                   S +K+ D G+  
Sbjct: 207 IHQLHYVHRDIKPDNVLLDVNGHIRLADF------------------GSCLKMNDDGTVQ 248
Query: 270 FEHQDHSYVVSTRHYRAPEVIL----GLGWNYP-CDLWSVGCILVELCSGEALFQTHENL 324
                 S  V T  Y +PE++     G+G   P CD WS+G  + E+  GE  F     +
Sbjct: 249 -----SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLV 303
Query: 325 E 325
           E
Sbjct: 304 E 304

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 35/237 (14%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAA--MIEIDVLQRLARHD 149
           +  L  +G+G+FG+V+      ++   A+K++  ++I K +E    M E +VL +  +H 
Sbjct: 40  FHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHP 99
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 V +   F   + +  V + + G  L+  L++   R F     R    ++  ++ 
Sbjct: 100 F----LVGLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALG 153
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H L +++ DLKPENILL S  ++ + D+     +                  I+  ST
Sbjct: 154 YLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKEN------------------IEHNST 195
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
           T      S    T  Y APEV+    ++   D W +G +L E+  G   F +    E
Sbjct: 196 T------STFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE 246

>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing Residues 1-317 Complex With Bound Tungstate Length = 317

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 26/230 (11%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           RYR+  K+G G+FG +    D    E VAIK+     K+ +     + +  ++ +   GG
Sbjct: 8   RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQ-----LHIESKIYKMMQGG 62
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
                IR      ++  +V E LGPSL D     S R F +  V  L  Q++  + ++H 
Sbjct: 63  VGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHS 121
Query: 213 LRLIHTDLKPENILL---VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
              IH D+KP+N L+        V + D+  L++  +D    +++P              
Sbjct: 122 KNFIHRDVKPDNFLMGLGKKGNLVYIIDFG-LAKKYRDARTHQHIP-------------- 166
Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
             ++++  +  T  Y +    LG+  +   DL S+G +L+    G   +Q
Sbjct: 167 --YRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ 214

>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d Length = 296

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 26/244 (10%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           RYR+  K+G G+FG +    D    E VAIK+     K+ +     + +  ++ +   GG
Sbjct: 10  RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQ-----LHIESKIYKMMQGG 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
                IR      ++  +V E LGPSL D     S R F +  V  L  Q++  + ++H 
Sbjct: 65  VGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHS 123
Query: 213 LRLIHTDLKPENILL---VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
              IH D+KP+N L+        V + D+  L++  +D    +++P              
Sbjct: 124 KNFIHRDVKPDNFLMGLGKKGNLVYIIDFG-LAKKYRDARTHQHIP-------------- 168
Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             ++++  +  T  Y +    LG+  +   DL S+G +L+    G   +Q  +       
Sbjct: 169 --YRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK 226
Query: 330 MERV 333
            ER+
Sbjct: 227 YERI 230

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 131/340 (38%), Gaps = 82/340 (24%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDN-EKKELVAIKIVRSINKYREAAMIEIDV-LQRLAR 147
            T  Y++  ++G+G F  V  C      +E  A+ I       R+   +E +  + RL +
Sbjct: 9   FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLK 68
Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           H       V++ +      H  ++F+ + G  L++ +    Y S   D    + +Q+LE+
Sbjct: 69  H----PNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYS-EADASHCI-QQILEA 122
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V   H++ ++H +LKPEN+LL S                          K +A+KL DFG
Sbjct: 123 VLHCHQMGVVHRNLKPENLLLASK------------------------LKGAAVKLADFG 158
Query: 267 ---STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
                  E Q       T  Y +PEV+    +  P DLW+ G IL  L  G   F   + 
Sbjct: 159 LAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ 218
Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
                                   R  +  + GA  D+P            W        
Sbjct: 219 -----------------------HRLYQQIKAGA-YDFPSPE---------W-------- 237
Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                D    +  DL+  +L  +P++R+ A EAL+HP+ +
Sbjct: 238 -----DTVTPEAKDLINKMLTINPSKRITAAEALKHPWIS 272

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 124/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 12  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 70
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 71  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 124
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH +L+  NIL+      K+ D+  L+R  +D  Y         IK            
Sbjct: 125 NYIHRNLRAANILVSDTLSCKIADFG-LARLIEDNEYTAREGAKFPIK------------ 171
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 172 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 221
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 222 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 259

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 98/237 (41%), Gaps = 36/237 (15%)
Query: 84  FAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDV- 141
            A     T  Y++  ++G+G F  V  C      +  A KI+ +     R+   +E +  
Sbjct: 23  MATCTRFTDDYQLFEELGKGAFSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKLEREAR 82
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELG 200
           + RL +H       V++ +         +VF+ + G  L++ +    Y S   D    + 
Sbjct: 83  ICRLLKH----PNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYS-EADASHCI- 136
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+LESV  +H+  ++H DLKPEN+LL S                          K +A+
Sbjct: 137 HQILESVNHIHQHDIVHRDLKPENLLLASK------------------------CKGAAV 172
Query: 261 KLIDFG---STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           KL DFG       E Q       T  Y +PEV+    +  P D+W+ G IL  L  G
Sbjct: 173 KLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVG 229

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 40/250 (16%)
Query: 96  ILSKM-GEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDI 150
           IL KM G+G+FG+V      +  +  AIK ++     ++   E  M+E  VL     H  
Sbjct: 20  ILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPF 79
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                  +   F  + ++  V E L  G  +Y      S   F +        +++  + 
Sbjct: 80  ----LTHMFCTFQTKENLFFVMEYLNGGDLMYHI---QSCHKFDLSRATFYAAEIILGLQ 132
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           F+H   +++ DLK +NILL    ++K+ D+         G   +N+       L D  + 
Sbjct: 133 FLHSKGIVYRDLKLDNILLDKDGHIKIADF---------GMCKENM-------LGDAKTN 176
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLEH 326
            F          T  Y APE++LG  +N+  D WS G +L E+  G++ F  Q  E L H
Sbjct: 177 XF--------CGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFH 228
Query: 327 LAMMERVLGP 336
              M+    P
Sbjct: 229 SIRMDNPFYP 238

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 112/269 (41%), Gaps = 38/269 (14%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY----REAAMIEIDV 141
           + +N   +YR+L   G+G FG+V  C      ++ A K +             A+ E  +
Sbjct: 181 VTKNTFRQYRVL---GKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQI 237
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELG 200
           L+++    +     V +   ++ ++ +C+V   + G  L   +       FP        
Sbjct: 238 LEKVNSRFV-----VSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYA 292
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            ++   +  +H  R+++ DLKPENILL    ++++ D               ++P+   I
Sbjct: 293 AEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAV----------HVPEGQTI 342
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
           K                 V T  Y APEV+    + +  D W++GC+L E+ +G++ FQ 
Sbjct: 343 K---------------GRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQ 387
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRA 349
            +       +ER++  +P     R   +A
Sbjct: 388 RKKKIKREEVERLVKEVPEEYSERFSPQA 416

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 112/269 (41%), Gaps = 38/269 (14%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY----REAAMIEIDV 141
           + +N   +YR+L   G+G FG+V  C      ++ A K +             A+ E  +
Sbjct: 181 VTKNTFRQYRVL---GKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQI 237
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELG 200
           L+++    +     V +   ++ ++ +C+V   + G  L   +       FP        
Sbjct: 238 LEKVNSRFV-----VSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYA 292
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            ++   +  +H  R+++ DLKPENILL    ++++ D               ++P+   I
Sbjct: 293 AEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAV----------HVPEGQTI 342
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
           K                 V T  Y APEV+    + +  D W++GC+L E+ +G++ FQ 
Sbjct: 343 K---------------GRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQ 387
Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRA 349
            +       +ER++  +P     R   +A
Sbjct: 388 RKKKIKREEVERLVKEVPEEYSERFSPQA 416

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 110/264 (41%), Gaps = 49/264 (18%)
Query: 84  FAIGENLTPRYRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVL 142
           F   EN    Y + SK +G G F  V +C      +  A K ++   K R       ++L
Sbjct: 20  FQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLK---KRRRGQDCRAEIL 76
Query: 143 QRLARHDIGGT--RCVQIRNWFDYRNHICIVFEKLG---------PSLYDFLRKNSYRSF 191
             +A  ++  +  R + +   ++  + I ++ E            P L + + +N     
Sbjct: 77  HEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSEN----- 131
Query: 192 PIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF 251
             D++R L +Q+LE V ++H+  ++H DLKP+NILL S                      
Sbjct: 132 --DVIR-LIKQILEGVYYLHQNNIVHLDLKPQNILLSS---------------------- 166
Query: 252 KNLPKSSAIKLIDFG-STTFEHQ-DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV 309
             +     IK++DFG S    H  +   ++ T  Y APE++         D+W++G I  
Sbjct: 167 --IYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAY 224
Query: 310 ELCSGEALFQTHENLEHLAMMERV 333
            L +  + F   +N E    + +V
Sbjct: 225 MLLTHTSPFVGEDNQETYLNISQV 248

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 16  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 74
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 75  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 128
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D            IK            
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEXTAREGAKFPIK------------ 175
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 176 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 225
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 226 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 263

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 25  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 83
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 84  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 137
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D            IK            
Sbjct: 138 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEXTAREGAKFPIK------------ 184
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 185 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 234
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 235 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 272

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 108/255 (42%), Gaps = 58/255 (22%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEID-------VLQRLA 146
           YR+L  +G+G F +V              K+ R I   RE A+  ID        LQ+L 
Sbjct: 17  YRLLKTIGKGNFAKV--------------KLARHILTGREVAIKIIDKTQLNPTSLQKLF 62
Query: 147 RHD-----IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELG 200
           R       +     V++    +    + ++ E   G  ++D+L   ++        R   
Sbjct: 63  REVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLV--AHGRMKEKEARSKF 120
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           RQ++ +V + H+ R++H DLK EN+LL +   +K+ D+ F +  +  G            
Sbjct: 121 RQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG------------ 168
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQ 319
           KL  F                  Y APE+  G  ++ P  D+WS+G IL  L SG   F 
Sbjct: 169 KLDAF-------------CGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFD 215
Query: 320 THENLEHLAMMERVL 334
             +NL+ L   ERVL
Sbjct: 216 G-QNLKELR--ERVL 227

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 22  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 80
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 81  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 134
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D            IK            
Sbjct: 135 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEXTAREGAKFPIK------------ 181
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 182 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 231
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 232 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 269

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 128/347 (36%), Gaps = 92/347 (26%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA----MIEIDVLQRLARHD 149
           + I+  +G+G FG V    + + K ++A+K++      +E        EI++   L   +
Sbjct: 16  FDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPN 75
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           I     +++ N+F  R  I ++ E   P   LY  L+K+    F          +L +++
Sbjct: 76  I-----LRMYNYFHDRKRIYLMLE-FAPRGELYKELQKHG--RFDEQRSATFMEELADAL 127
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            + HE ++IH D+KPEN+L+          YK                    +K+ DFG 
Sbjct: 128 HYCHERKVIHRDIKPENLLM---------GYK------------------GELKIADFGW 160
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
           S          +  T  Y  PE+I G   +   DLW  G +  E   G   F +  + E 
Sbjct: 161 SVHAPSLRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE- 219
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
                       H  ++  D +   +   G++                            
Sbjct: 220 -----------THRRIVNVDLKFPPFLSDGSK---------------------------- 240
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                     DL+  LLRY P +RL  +  + HP+   + RR   P+
Sbjct: 241 ----------DLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLPPV 277

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 40  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 92
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNG-CLLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 149
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                    + 
Sbjct: 150 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR-----------------AN 192
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           +F        V T  Y +PE++     +   DLW++GCI+ +L +G
Sbjct: 193 SF--------VGTAQYVSPELLTEKSASKSSDLWALGCIIYQLVAG 230

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 270 RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 323
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+  + +   +  + ++  Q+   +A++  +
Sbjct: 324 LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM 382
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 383 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 429
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 430 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 479

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 24  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 82
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 83  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 136
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D            IK            
Sbjct: 137 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEXTAREGAKFPIK------------ 183
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 184 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 233
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 234 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 271

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++  N   EA + E  V+++L RH+    +
Sbjct: 188 RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGNMSPEAFLQEAQVMKKL-RHE----K 241
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 242 LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 300
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L R  +D  Y         IK            
Sbjct: 301 NYVHRDLRAANILVGENLVCKVADFG-LGRLIEDNEYTARQGAKFPIK------------ 347
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 348 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 397

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 130/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 10  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 68  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 120
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S   +L    
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTEL---- 166
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 167 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 214
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 215 YKRISRVEFTFP------------DFVTEGAR---------------------------- 234
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 235 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 263

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 18  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 76
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 77  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 130
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D            IK            
Sbjct: 131 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEXTAREGAKFPIK------------ 177
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 178 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 227
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 228 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 265

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 104/247 (42%), Gaps = 50/247 (20%)
Query: 78  KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI 137
           K GHY+  +G+ L          G GTFG+V           VA+KI+    K R   ++
Sbjct: 14  KIGHYI--LGDTL----------GVGTFGKVKVGKHELTGHKVAVKILNR-QKIRSLDVV 60
Query: 138 -----EIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSF 191
                EI  L +L RH       +++       + I +V E + G  L+D++ KN     
Sbjct: 61  GKIRREIQNL-KLFRH----PHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNG--RL 113
Query: 192 PIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF 251
                R L +Q+L  V + H   ++H DLKPEN+LL +    K+ D+  LS    DG + 
Sbjct: 114 DEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFG-LSNMMSDGEFL 172
Query: 252 KNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
           +             GS  +   +   V+S R Y  PEV          D+WS G IL  L
Sbjct: 173 RX----------SCGSPNYAAPE---VISGRLYAGPEV----------DIWSSGVILYAL 209
Query: 312 CSGEALF 318
             G   F
Sbjct: 210 LCGTLPF 216

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 41/228 (17%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           +G+GT+G V    D   +  +AIK I    ++Y +    EI + + L   +I     VQ 
Sbjct: 30  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNI-----VQY 84
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPI-DLVRELG---RQLLESVAFMHEL 213
              F     I I  E++ G SL   LR    +  P+ D  + +G   +Q+LE + ++H+ 
Sbjct: 85  LGSFSENGFIKIFMEQVPGGSLSALLRS---KWGPLKDNEQTIGFYTKQILEGLKYLHDN 141
Query: 214 RLIHTDLKPENILLVSAEYV-KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
           +++H D+K +N+L+ +   V K+ D+    R                +  I+  + TF  
Sbjct: 142 QIVHRDIKGDNVLINTYSGVLKISDFGTSKR----------------LAGINPCTETF-- 183
Query: 273 QDHSYVVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELCSGEALF 318
                   T  Y APE+I     G+    D+WS+GC ++E+ +G+  F
Sbjct: 184 ------TGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPF 225

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 129/343 (37%), Gaps = 94/343 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 36  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 93
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 94  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 146
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA                             +K+ DFG
Sbjct: 147 LSYCHSKRVIHRDIKPENLLLGSA---------------------------GELKIADFG 179
Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
            S        + +  T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E
Sbjct: 180 WSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE 239
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
               + RV    P             +   GAR                           
Sbjct: 240 TYKRISRVEFTFP------------DFVTEGAR--------------------------- 260
Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                      DL+  LL+++P++R   RE L HP+ T +  +
Sbjct: 261 -----------DLISRLLKHNPSQRPMLREVLEHPWITANSSK 292

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 14  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 71
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 72  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 124
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 125 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTTL---- 170
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 171 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 218
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 219 YKRISRVEFTFP------------DFVTEGAR---------------------------- 238
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 239 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 267

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 16  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 74
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 75  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 128
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D            IK            
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEXTAREGAKFPIK------------ 175
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 176 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 225
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 226 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 263

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 104/251 (41%), Gaps = 39/251 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHD 149
           + +   +G+G+FG+V      +  +  AIK ++     ++   E  M+E  VL     H 
Sbjct: 20  FELHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHP 79
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
                   +   F  + ++  V E L  G  +Y      S   F +        +++  +
Sbjct: 80  F----LTHMFCTFQTKENLFFVMEYLNGGDLMYHI---QSCHKFDLSRATFYAAEIILGL 132
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            F+H   +++ DLK +NILL    ++K+ D+         G   +N+       L D  +
Sbjct: 133 QFLHSKGIVYRDLKLDNILLDKDGHIKIADF---------GMCKENM-------LGDAKT 176
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLE 325
             F          T  Y APE++LG  +N+  D WS G +L E+  G++ F  Q  E L 
Sbjct: 177 NEF--------CGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELF 228
Query: 326 HLAMMERVLGP 336
           H   M+    P
Sbjct: 229 HSIRMDNPFYP 239

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 40  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 92
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 149
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 150 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 190
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 191 ------ANXFVGTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVAG 230

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 123/285 (43%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 17  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 75
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 76  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 129
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D            IK            
Sbjct: 130 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEXTAREGAKFPIK------------ 176
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 177 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 226
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 227 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 264

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 130/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + ++K ++A+K++       E A +E  +     +Q   RH
Sbjct: 7   FEIGRPLGKGKFGNVYLAREKQRKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 64
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 65  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 117
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 118 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTTL---- 163
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 164 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 211
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 212 YKRISRVEFTFP------------DFVTEGAR---------------------------- 231
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 232 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 260

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 41/219 (18%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G FG V  C    + + VAIK + S ++ R+A ++E+  L R+   +I       ++
Sbjct: 17  VGRGAFGVV--CKAKWRAKDVAIKQIESESE-RKAFIVELRQLSRVNHPNI-------VK 66
Query: 160 NWFDYRNHICIVFEKL-GPSLYDFLR-KNSYRSFPIDLVRELGRQLLESVAFMHELR--- 214
            +    N +C+V E   G SLY+ L        +          Q  + VA++H ++   
Sbjct: 67  LYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKA 126
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           LIH DLKP N+LLV+                            + +K+ DFG+       
Sbjct: 127 LIHRDLKPPNLLLVAG--------------------------GTVLKICDFGTACDIQTH 160
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
            +    +  + APEV  G  ++  CD++S G IL E+ +
Sbjct: 161 MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVIT 199

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 36/232 (15%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDV-LQRLA 146
           ++T  Y++   +G+G F  V  C         A KI+ +     R+   +E +  + RL 
Sbjct: 1   SMTDEYQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLEREARICRLL 60
Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           +H    +  V++ +         +VF+ + G  L++ +    Y S   D    + +Q+LE
Sbjct: 61  KH----SNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYS-EADASHCI-QQILE 114
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V   H++ ++H DLKPEN+LL S                          K +A+KL DF
Sbjct: 115 AVLHCHQMGVVHRDLKPENLLLASK------------------------CKGAAVKLADF 150
Query: 266 GSTTFEHQDHSY---VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           G       D         T  Y +PEV+    +  P D+W+ G IL  L  G
Sbjct: 151 GLAIEVQGDQQAWFGFAGTPGYLSPEVLRKEAYGKPVDIWACGVILYILLVG 202

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 27/264 (10%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+L K G G   QV +       ++ A+K+++     R A        +R    ++    
Sbjct: 23  RVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPF 82
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V +   F     + ++ E L G  L+  L +     F  D       ++  ++  +H+ 
Sbjct: 83  IVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGI--FMEDTACFYLAEISMALGHLHQK 140
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
            +I+ DLKPENI+L    +VK+ D+     S  DG+                        
Sbjct: 141 GIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTV----------------------- 177
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERV 333
            H++   T  Y APE+++  G N   D WS+G ++ ++ +G   F      + +  + + 
Sbjct: 178 THTF-CGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKC 236
Query: 334 LGPLPHHMVIRADRRAEKYFRRGA 357
              LP ++   A    +K  +R A
Sbjct: 237 KLNLPPYLTQEARDLLKKLLKRNA 260

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 108/256 (42%), Gaps = 68/256 (26%)
Query: 78  KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI 137
           K GHYV                +G GTFG+V           VA+KI+    K R     
Sbjct: 9   KIGHYVLG------------DTLGVGTFGKVKIGEHQLTGHKVAVKILNR-QKIRS---- 51
Query: 138 EIDVLQRLARHDIGGTRCVQIRNWFDYRN-HICIVFEKL--------------GPSLYDF 182
            +DV+ ++ R         +I+N   +R+ HI  +++ +              G  L+D+
Sbjct: 52  -LDVVGKIKR---------EIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDY 101
Query: 183 LRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS 242
           + K+  R   ++  R L +Q+L +V + H   ++H DLKPEN+LL +    K+ D+  LS
Sbjct: 102 ICKHG-RVEEME-ARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFG-LS 158
Query: 243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLW 302
               DG + ++            GS  +   +   V+S R Y  PEV          D+W
Sbjct: 159 NMMSDGEFLRD----------SCGSPNYAAPE---VISGRLYAGPEV----------DIW 195
Query: 303 SVGCILVELCSGEALF 318
           S G IL  L  G   F
Sbjct: 196 SCGVILYALLCGTLPF 211

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 41/219 (18%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           +G G FG V  C    + + VAIK + S ++ R+A ++E+  L R+   +I       ++
Sbjct: 16  VGRGAFGVV--CKAKWRAKDVAIKQIESESE-RKAFIVELRQLSRVNHPNI-------VK 65
Query: 160 NWFDYRNHICIVFEKL-GPSLYDFLR-KNSYRSFPIDLVRELGRQLLESVAFMHELR--- 214
            +    N +C+V E   G SLY+ L        +          Q  + VA++H ++   
Sbjct: 66  LYGACLNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKA 125
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           LIH DLKP N+LLV+                            + +K+ DFG+       
Sbjct: 126 LIHRDLKPPNLLLVAG--------------------------GTVLKICDFGTACDIQTH 159
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
            +    +  + APEV  G  ++  CD++S G IL E+ +
Sbjct: 160 MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVIT 198

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 11  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 68
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 69  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 121
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+ +   +          P S    L    
Sbjct: 122 LSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSCHA----------PSSRRTTL---- 167
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 168 ------------SGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 215
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 216 YKRISRVEFTFP------------DFVTEGAR---------------------------- 235
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 236 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 264

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 44/270 (16%)
Query: 94  YRILSKMGEGTFGQV-VECFDNEKKELVAIKI----VRSINKYREAAMIEIDVLQRLARH 148
           Y + + +G G++G+V +      +    A KI    V  ++++++    EI++++ L   
Sbjct: 11  YTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQ----EIEIMKSLDHP 66
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           +I     +++   F+    I +V E   G  L++  R    R F       + + +L +V
Sbjct: 67  NI-----IRLYETFEDNTDIYLVMELCTGGELFE--RVVHKRVFRESDAARIMKDVLSAV 119
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
           A+ H+L + H DLKPEN L ++      PD                    S +KLIDFG 
Sbjct: 120 AYCHKLNVAHRDLKPENFLFLTDS----PD--------------------SPLKLIDFGL 155
Query: 267 STTFEHQDHSYV-VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
           +  F+        V T +Y +P+V+ GL +   CD WS G ++  L  G   F    + E
Sbjct: 156 AARFKPGKMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDXE 214
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
            +  +       P    +    +AE   RR
Sbjct: 215 VMLKIREGTFTFPEKDWLNVSPQAESLIRR 244

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 44/270 (16%)
Query: 94  YRILSKMGEGTFGQV-VECFDNEKKELVAIKI----VRSINKYREAAMIEIDVLQRLARH 148
           Y + + +G G++G+V +      +    A KI    V  ++++++    EI++++ L   
Sbjct: 28  YTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQ----EIEIMKSLDHP 83
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           +I     +++   F+    I +V E   G  L++  R    R F       + + +L +V
Sbjct: 84  NI-----IRLYETFEDNTDIYLVMELCTGGELFE--RVVHKRVFRESDAARIMKDVLSAV 136
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
           A+ H+L + H DLKPEN L ++      PD                    S +KLIDFG 
Sbjct: 137 AYCHKLNVAHRDLKPENFLFLTDS----PD--------------------SPLKLIDFGL 172
Query: 267 STTFEHQDHSYV-VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
           +  F+        V T +Y +P+V+ GL +   CD WS G ++  L  G   F    + E
Sbjct: 173 AARFKPGKMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDXE 231
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
            +  +       P    +    +AE   RR
Sbjct: 232 VMLKIREGTFTFPEKDWLNVSPQAESLIRR 261

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 15  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 73  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 125
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTTL---- 171
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 172 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 219
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 220 YKRISRVEFTFP------------DFVTEGAR---------------------------- 239
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 240 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 268

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 43/243 (17%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           +G+GT+G V    D   +  +AIK I    ++Y +    EI + + L   +I     VQ 
Sbjct: 16  LGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNI-----VQY 70
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPI-DLVRELG---RQLLESVAFMHEL 213
              F     I I  E++ G SL   LR    +  P+ D  + +G   +Q+LE + ++H+ 
Sbjct: 71  LGSFSENGFIKIFMEQVPGGSLSALLRS---KWGPLKDNEQTIGFYTKQILEGLKYLHDN 127
Query: 214 RLIHTDLKPENILLVSAEYV-KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
           +++H D+K +N+L+ +   V K+ D+                  S  +  I+  + TF  
Sbjct: 128 QIVHRDIKGDNVLINTYSGVLKISDFG----------------TSKRLAGINPCTETF-- 169
Query: 273 QDHSYVVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
                   T  Y APE+I     G+    D+WS+GC ++E+ +G+  F  +E  E  A M
Sbjct: 170 ------TGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPF--YELGEPQAAM 221
Query: 331 ERV 333
            +V
Sbjct: 222 FKV 224

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 15  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 73  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 125
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTDL---- 171
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 172 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 219
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 220 YKRISRVEFTFP------------DFVTEGAR---------------------------- 239
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 240 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 268

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 128/339 (37%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 15  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 73  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 125
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTTL---- 171
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 172 ------------CGTLDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 219
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 220 YKRISRVEFTFP------------DFVTEGAR---------------------------- 239
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 240 ----------DLISRLLKHNPSQRPXLREVLEHPWITAN 268

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 10  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 68  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 120
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTTL---- 166
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 167 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 214
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 215 YKRISRVEFTFP------------DFVTEGAR---------------------------- 234
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 235 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 263

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 10  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 68  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 120
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTXL---- 166
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 167 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 214
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 215 YKRISRVEFTFP------------DFVTEGAR---------------------------- 234
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 235 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 263

>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation Length = 293

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 4   EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 63
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E++ P   L+DF+ +    +   +L R 
Sbjct: 64  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERMEPVQDLFDFITERG--ALQEELARS 118
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 119 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 153
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 154 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 212
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 213 PFEHDEEI 220

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 13  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 71  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 123
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTTL---- 169
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 170 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 217
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 218 YKRISRVEFTFP------------DFVTEGAR---------------------------- 237
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 238 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 266

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 13  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 71  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 123
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRAAL---- 169
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 170 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 217
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 218 YKRISRVEFTFP------------DFVTEGAR---------------------------- 237
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 238 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 266

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 14  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 67
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+  + +   +  + ++  Q+   +A++  +
Sbjct: 68  LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM 126
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 127 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 173
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 174 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 223

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 9   FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 66
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 67  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 119
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 120 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTTL---- 165
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 166 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 213
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 214 YKRISRVEFTFP------------DFVTEGAR---------------------------- 233
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 234 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 262

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 38  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 90
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 147
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK         +++A         
Sbjct: 148 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA-------RANAF-------- 192
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                     V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 193 ----------VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 10  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 68  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 120
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTDL---- 166
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 167 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 214
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 215 YKRISRVEFTFP------------DFVTEGAR---------------------------- 234
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 235 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 263

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 10  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 68  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 120
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTDL---- 166
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 167 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 214
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 215 YKRISRVEFTFP------------DFVTEGAR---------------------------- 234
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 235 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 263

>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide Length = 361

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 151/381 (39%), Gaps = 67/381 (17%)
Query: 78  KDGHYVFAIGENLTPRYRILSKMGEGTFGQV---VECFDNEKKELVAIK-IVRSINKYRE 133
           KD   ++     L+  ++I  K+GEGTF  V           +E +A+K ++ + +  R 
Sbjct: 7   KDIEKLYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRI 66
Query: 134 AAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFP 192
           AA  E+  L      D      + ++  F   +H+ I    L   S  D L   S++   
Sbjct: 67  AA--ELQCLTVAGGQD----NVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQE-- 118
Query: 193 IDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK 252
              VRE    L +++  +H+  ++H D+KP N L       ++  Y  +      G++  
Sbjct: 119 ---VREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNR----RLKKYALVDFGLAQGTH-- 169
Query: 253 NLPKSSAIKLIDFGSTTFEH----QDHSYVVSTRH-----------YRAPEVILGL-GWN 296
                + I+L+ F  +  +     Q+   +  +R            +RAPEV+       
Sbjct: 170 ----DTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQT 225
Query: 297 YPCDLWSVGCILVELCSGE-ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
              D+WS G I + L SG    ++  ++L  LA +          M IR  R   +  + 
Sbjct: 226 TAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQI----------MTIRGSRETIQAAKT 275
Query: 356 GARLDWPDGATSRDSMRAVWKLLR--------LPNLIMQHVDHSAG------DLIDLLQG 401
             +            +R + + LR        L + I  H  +  G      +  DLL  
Sbjct: 276 FGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDK 335
Query: 402 LLRYDPAERLKAREALRHPFF 422
           LL  +PA R+ A EAL HPFF
Sbjct: 336 LLDLNPASRITAEEALLHPFF 356

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 107/256 (41%), Gaps = 68/256 (26%)
Query: 78  KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI 137
           K GHYV                +G GTFG+V           VA+KI+    K R     
Sbjct: 9   KIGHYVLG------------DTLGVGTFGKVKIGEHQLTGHKVAVKILNR-QKIRS---- 51
Query: 138 EIDVLQRLARHDIGGTRCVQIRNWFDYRN-HICIVFEKL--------------GPSLYDF 182
            +DV+ ++ R         +I+N   +R+ HI  +++ +              G  L+D+
Sbjct: 52  -LDVVGKIKR---------EIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDY 101
Query: 183 LRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS 242
           + K+  R   ++  R L +Q+L +V + H   ++H DLKPEN+LL +    K+ D+  LS
Sbjct: 102 ICKHG-RVEEME-ARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFG-LS 158
Query: 243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLW 302
               DG + +             GS  +   +   V+S R Y  PEV          D+W
Sbjct: 159 NMMSDGEFLRT----------SCGSPNYAAPE---VISGRLYAGPEV----------DIW 195
Query: 303 SVGCILVELCSGEALF 318
           S G IL  L  G   F
Sbjct: 196 SCGVILYALLCGTLPF 211

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 187 RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 240
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+  + +   +  + ++  Q+   +A++  +
Sbjct: 241 LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM 299
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 300 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 346
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 347 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 396

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 41  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 93
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 94  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 150
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                    + 
Sbjct: 151 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR-----------------AN 193
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           +F        V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 194 SF--------VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 231

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 187 RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 240
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+  + +   +  + ++  Q+   +A++  +
Sbjct: 241 LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM 299
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 300 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 346
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 347 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 396

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 43  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 95
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 96  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 152
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 153 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 193
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 194 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 233

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 11  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 68
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 69  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 121
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 122 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTDL---- 167
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 168 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 215
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 216 YKRISRVEFTFP------------DFVTEGAR---------------------------- 235
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 236 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 264

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 40  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 92
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 149
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 150 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 190
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 191 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 27  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 84
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 85  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 137
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 138 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTTL---- 183
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 184 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 231
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 232 YKRISRVEFTFP------------DFVTEGAR---------------------------- 251
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 252 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 280

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 41  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 93
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 94  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 150
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 151 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 191
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 192 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 231

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 21  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 74
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 75  LVQLYAVVS-EEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 133
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 180
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 181 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 18  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 71
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+  + +   +  + ++  Q+   +A++  +
Sbjct: 72  LVQLYAVVS-EEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERM 130
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 131 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 177
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 178 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 227

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 13  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 71  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 123
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTTL---- 169
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 170 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 217
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 218 YKRISRVEFTFP------------DFVTEGAR---------------------------- 237
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 238 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 266

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 10  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 68  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 120
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRXXL---- 166
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 167 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 214
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 215 YKRISRVEFTFP------------DFVTEGAR---------------------------- 234
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 235 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 263

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 40  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 92
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 149
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 150 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 190
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 191 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 18  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFF----- 72
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 73  --VKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 127
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 128 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 168
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 169 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 208

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 125/341 (36%), Gaps = 92/341 (26%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA----MIEIDVLQRLARHDIGGTRC 155
           +G+G FG V    + + K ++A+K++      +E        EI++   L   +I     
Sbjct: 23  LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNI----- 77
Query: 156 VQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
           +++ N+F  R  I ++ E   P   LY  L+K+    F          +L +++ + HE 
Sbjct: 78  LRMYNYFHDRKRIYLMLE-FAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCHER 134
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-STTFEH 272
           ++IH D+KPEN+L+          YK                    +K+ DFG S     
Sbjct: 135 KVIHRDIKPENLLM---------GYK------------------GELKIADFGWSVHAPS 167
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER 332
                +  T  Y  PE+I G   +   DLW  G +  E   G   F +  + E       
Sbjct: 168 LRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE------- 220
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
                 H  ++  D +   +   G++                                  
Sbjct: 221 -----THRRIVNVDLKFPPFLSDGSK---------------------------------- 241
Query: 393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
               DL+  LLRY P +RL  +  + HP+   + RR   P+
Sbjct: 242 ----DLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLPPV 278

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 40  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 92
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 149
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 150 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 190
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 191 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 40  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 92
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 149
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 150 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 190
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 191 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 38  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 90
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 147
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 148 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 188
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 189 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 10  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 68  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 120
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 121 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRAAL---- 166
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 167 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 214
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 215 YKRISRVEFTFP------------DFVTEGAR---------------------------- 234
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 235 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 263

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 34/241 (14%)
Query: 95  RILSKMGEGTFGQV-VECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           +++ ++G G FG+V +  ++   K  VAIK ++      E+ + E  ++++L +HD    
Sbjct: 12  QLIKRLGNGQFGEVWMGTWNGNTK--VAIKTLKPGTMSPESFLEEAQIMKKL-KHD---- 64
Query: 154 RCVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
           + VQ+         I IV E +   SL DFL+    R+  +  + ++  Q+   +A++  
Sbjct: 65  KLVQLYAVVS-EEPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIER 123
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
           +  IH DL+  NIL+ +    K+ D+  L+R  +D            IK           
Sbjct: 124 MNYIHRDLRSANILVGNGLICKIADFG-LARLIEDNEXTARQGAKFPIK----------- 171
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMME 331
                      + APE  L   +    D+WS G +L EL + G   +    N E L  +E
Sbjct: 172 -----------WTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVE 220
Query: 332 R 332
           R
Sbjct: 221 R 221

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 105/264 (39%), Gaps = 27/264 (10%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+L K G G   QV +       ++ A+K+++     R A        +R    ++    
Sbjct: 23  RVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPF 82
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V +   F     + ++ E L G  L+  L +     F  D       ++  ++  +H+ 
Sbjct: 83  IVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGI--FMEDTACFYLAEISMALGHLHQK 140
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
            +I+ DLKPENI+L    +VK+ D+     S  DG+                        
Sbjct: 141 GIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTV----------------------- 177
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERV 333
            H +   T  Y APE+++  G N   D WS+G ++ ++ +G   F      + +  + + 
Sbjct: 178 THXF-CGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKC 236
Query: 334 LGPLPHHMVIRADRRAEKYFRRGA 357
              LP ++   A    +K  +R A
Sbjct: 237 KLNLPPYLTQEARDLLKKLLKRNA 260

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 187 RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 240
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+  + +   +  + ++  Q+   +A++  +
Sbjct: 241 LVQLYAVVS-EEPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM 299
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 300 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 346
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 347 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 396

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 38  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 90
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 147
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 148 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 188
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 189 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 17  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFF----- 71
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 72  --VKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 126
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 127 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 167
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 168 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 207

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 15  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFF----- 69
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 70  --VKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 124
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 125 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 165
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 166 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 205

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 105/243 (43%), Gaps = 41/243 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI----EIDVLQRLARHD 149
           + IL  +G G FG+V         ++ A+KI+      + A       E DVL       
Sbjct: 76  FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVN----- 130
Query: 150 IGGTRCVQIRNW-FDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            G ++ +   ++ F   N++ +V +  +G  L   L K   R  P ++ R    +++ ++
Sbjct: 131 -GDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDR-LPEEMARFYLAEMVIAI 188
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
             +H+L  +H D+KP+NIL+    ++++ D+                   S +KL++ G+
Sbjct: 189 DSVHQLHYVHRDIKPDNILMDMNGHIRLADF------------------GSCLKLMEDGT 230
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLG-----WNYPCDLWSVGCILVELCSGEALFQTHE 322
                   S  V T  Y +PE++  +      +   CD WS+G  + E+  GE  F    
Sbjct: 231 V-----QSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAES 285
Query: 323 NLE 325
            +E
Sbjct: 286 LVE 288

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 13  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 71  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 123
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRDDL---- 169
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 170 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 217
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 218 YKRISRVEFTFP------------DFVTEGAR---------------------------- 237
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 238 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 266

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 37  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 89
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 90  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 146
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                    + 
Sbjct: 147 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR-----------------AN 189
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           +F        V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 190 SF--------VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 227

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 12  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 69
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 70  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 122
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 123 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRXXL---- 168
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 169 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 216
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 217 YKRISRVEFTFP------------DFVTEGAR---------------------------- 236
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 237 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 265

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 16  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFF----- 70
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 71  --VKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 125
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 126 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 166
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 167 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 206

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 13  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 71  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 123
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRXXL---- 169
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 170 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 217
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 218 YKRISRVEFTFP------------DFVTEGAR---------------------------- 237
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 238 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 266

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 140/353 (39%), Gaps = 59/353 (16%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQ 143
           +GE     +  +S++G G  G V +        ++A K++    K   R   + E+ VL 
Sbjct: 10  VGELKDDDFERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIRELQVL- 68
Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
               H+      V     F     I I  E +     D + K + R  P +++ ++   +
Sbjct: 69  ----HECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKR-IPEEILGKVSIAV 123
Query: 204 LESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           L  +A++ E  +++H D+KP NIL+ S   +K+ D+                    + +L
Sbjct: 124 LRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGV------------------SGQL 165
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           ID  + +F        V TR Y APE + G  ++   D+WS+G  LVEL  G       +
Sbjct: 166 IDSMANSF--------VGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVGRYPIPPPD 217
Query: 323 NLEHLAMMER--VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL-- 378
             E  A+  R  V G       I    R       G  +D      SR +M A+++LL  
Sbjct: 218 AKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMD------SRPAM-AIFELLDY 270
Query: 379 -------RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                  +LPN +         D  + +   L  +PAER   +    H F  R
Sbjct: 271 IVNEPPPKLPNGVF------TPDFQEFVNKCLIKNPAERADLKMLTNHTFIKR 317

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 47/248 (18%)
Query: 78  KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI 137
           +   ++       +  Y +  ++G+G F  V  C         A KI+ +    ++ +  
Sbjct: 15  RGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINT----KKLSAR 70
Query: 138 EIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVR 197
           +   L+R AR       C ++++    R H  I  E     ++D +       F   + R
Sbjct: 71  DFQKLEREAR------ICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGEL--FEDIVAR 122
Query: 198 ELG---------RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
           E           +Q+LES+A+ H   ++H +LKPEN+LL S                   
Sbjct: 123 EFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASK------------------ 164
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGC 306
                  K +A+KL DFG     +   ++     T  Y +PEV+    ++ P D+W+ G 
Sbjct: 165 ------AKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGV 218
Query: 307 ILVELCSG 314
           IL  L  G
Sbjct: 219 ILYILLVG 226

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 21  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 74
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 75  LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 133
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 180
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 181 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 37  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 89
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 90  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 146
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 147 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 187
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 188 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 227

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 127/339 (37%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 15  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   P   +Y  L+K S   F          +L  +
Sbjct: 73  ----PNILRLYGYFHDATRVYLILE-YAPRGEVYKELQKLS--KFDEQRTATYITELANA 125
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRTTL---- 171
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 172 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 219
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 220 YKRISRVEFTFP------------DFVTEGAR---------------------------- 239
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 240 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 268

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 41/223 (18%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV----RSINKYREAAMIEIDVLQRLARHDIGG 152
           L ++G G+FG V    D    E+VAIK +    +  N+  +  + E+  LQ+L RH    
Sbjct: 59  LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL-RH---- 113
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
              +Q R  +   +   +V E    S  D L  +      +++   +    L+ +A++H 
Sbjct: 114 PNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIA-AVTHGALQGLAYLHS 172
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
             +IH D+K  NIL                           L +   +KL DFGS +   
Sbjct: 173 HNMIHRDVKAGNIL---------------------------LSEPGLVKLGDFGSASIMA 205
Query: 273 QDHSYVVSTRHYRAPEVILGLG---WNYPCDLWSVGCILVELC 312
             + + V T ++ APEVIL +    ++   D+WS+G   +EL 
Sbjct: 206 PANXF-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 247

>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1) Length = 311

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 38/239 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA-----MIEIDVLQRLARH 148
           ++ LS++G G++G+V +    E   L A+K  RS++ +R        + E+   +++ +H
Sbjct: 59  FQRLSRLGHGSYGEVFKVRSKEDGRLYAVK--RSMSPFRGPKDRARKLAEVGSHEKVGQH 116
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 CV++   ++    + +  E  GPSL          S P   V    R  L ++A
Sbjct: 117 PC----CVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGA-SLPEAQVWGYLRDTLLALA 171
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +H   L+H D+KP NI L      K+ D+  L                  ++L   G+ 
Sbjct: 172 HLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLL------------------VELGTAGAG 213
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
             +  D  Y+       APE++ G  +    D++S+G  ++E+     L    E  + L
Sbjct: 214 EVQEGDPRYM-------APELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQL 264

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 127/340 (37%), Gaps = 94/340 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 11  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 68
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 69  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 121
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA                             +K+ DFG
Sbjct: 122 LSYCHSKRVIHRDIKPENLLLGSA---------------------------GELKIADFG 154
Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
            S          +  T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E
Sbjct: 155 WSVHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE 214
Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
               + RV    P             +   GAR                           
Sbjct: 215 TYKRISRVEFTFP------------DFVTEGAR--------------------------- 235
Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                      DL+  LL+++P++R   RE L HP+ T +
Sbjct: 236 -----------DLISRLLKHNPSQRPMLREVLEHPWITAN 264

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 22  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 74
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 75  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 131
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 132 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 172
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 173 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 212

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 40/223 (17%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLAR-HDIGGTR 154
           +GEG+F  VV   +       AIKI+  R I K  +   +  E DV+ RL     +    
Sbjct: 45  LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 104
Query: 155 CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           C Q     D + +  + + K G  L  ++RK    SF     R    +++ ++ ++H   
Sbjct: 105 CFQD----DEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKG 157
Query: 215 LIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
           +IH DLKPENILL    ++++ D+   K LS  SK                         
Sbjct: 158 IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR---------------------- 195
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
               +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 196 ---ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 235

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 130/342 (38%), Gaps = 92/342 (26%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 36  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 93
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 94  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 146
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 147 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRDDL---- 192
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 193 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 240
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 241 YKRISRVEFTFP------------DFVTEGAR---------------------------- 260
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                     DL+  LL+++P++R   RE L HP+ T +  +
Sbjct: 261 ----------DLISRLLKHNPSQRPMLREVLEHPWITANSSK 292

>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 20  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 79
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 80  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 134
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 135 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 169
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 170 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 228
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 229 PFEHDEEI 236

>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 20  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 79
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 80  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 134
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 135 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 169
Query: 259 AIKLIDFGSTT-FEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 170 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 228
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 229 PFEHDEEI 236

>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of P27kip1 Carboxy-Terminal Peptide Length = 320

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 39  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 98
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 99  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 153
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 154 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 188
Query: 259 AIKLIDFGSTT-FEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 189 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 247
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 248 PFEHDEEI 255

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 12  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 65
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 66  LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 124
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 125 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 171
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 172 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 221

>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 20  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 79
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 80  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 134
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 135 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 169
Query: 259 AIKLIDFGSTT-FEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 170 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 228
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 229 PFEHDEEI 236

>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution Length = 300

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 19  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 78
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 79  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 133
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 134 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 168
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 169 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 227
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 228 PFEHDEEI 235

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 10  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 63
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 64  LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 122
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 123 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 169
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 170 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 219

>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With Inhibitor Length = 333

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 52  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 111
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 112 LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 166
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 167 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 201
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 202 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 260
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 261 PFEHDEEI 268

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 127/339 (37%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 15  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 72
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   P   +Y  L+K S   F          +L  +
Sbjct: 73  ----PNILRLYGYFHDATRVYLILE-YAPRGEVYKELQKLS--KFDEQRTATYITELANA 125
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 126 LSYCHSKRVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRXXL---- 171
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 172 ------------XGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 219
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 220 YKRISRVEFTFP------------DFVTEGAR---------------------------- 239
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 240 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 268

>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa Length = 300

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 19  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 78
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 79  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 133
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 134 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 168
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 169 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 227
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 228 PFEHDEEI 235

>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small Molecule Inhibitor Length = 298

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 5   EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 64
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 65  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 119
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 120 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 154
Query: 259 AIKLIDFGSTT-FEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 155 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 213
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 214 PFEHDEEI 221

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+ E+V F+H   L+H DLKP NI     + VKV D+  ++   +D      L    A  
Sbjct: 172 QIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPA-- 229
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                     +  H   V T+ Y +PE I G  +++  D++S+G IL EL
Sbjct: 230 ----------YATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFEL 269

>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546 Length = 308

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 27  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 86
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 87  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 141
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 142 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 176
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 177 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 235
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 236 PFEHDEEI 243

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 21  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 74
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 75  LVQLYAVVS-EEPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 133
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 180
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 181 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 13  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 72
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 73  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 128
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D  +FK   P  S I       
Sbjct: 129 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPI------- 181
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 182 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 210

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 37/231 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAAMIEID--VLQRLARHD 149
           + +L  +G G++ +V+     +   + A+K+V+   +N   +   ++ +  V ++ + H 
Sbjct: 11  FDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHP 70
Query: 150 --IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             +G   C Q  +    R    I +   G  ++   R+   R  P +  R    ++  ++
Sbjct: 71  FLVGLHSCFQTES----RLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLAL 123
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++HE  +I+ DLK +N+LL S  ++K+ DY       +                   G 
Sbjct: 124 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP------------------GD 165
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
           TT      S    T +Y APE++ G  + +  D W++G ++ E+ +G + F
Sbjct: 166 TT------SXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 210

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 44/248 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD---- 149
           YR+L  +G+G F +V         + VA+KI+       +   +    LQ+L R      
Sbjct: 16  YRLLKTIGKGNFAKVKLARHILTGKEVAVKII-------DKTQLNSSSLQKLFREVRIMK 68
Query: 150 -IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            +     V++    +    + +V E   G  ++D+L   ++        R   RQ++ +V
Sbjct: 69  VLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLV--AHGRMKEKEARAKFRQIVSAV 126
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            + H+  ++H DLK EN+LL +   +K+ D+ F +                         
Sbjct: 127 QYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSN------------------------E 162
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHENLEH 326
            TF ++  ++  S   Y APE+  G  ++ P  D+WS+G IL  L SG   F   +NL+ 
Sbjct: 163 FTFGNKLDTFCGSP-PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG-QNLKE 220
Query: 327 LAMMERVL 334
           L   ERVL
Sbjct: 221 LR--ERVL 226

>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 32  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 91
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 92  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 146
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 147 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 181
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 182 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 240
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 241 PFEHDEEI 248

>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261 Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 32  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 91
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 92  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 146
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 147 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 181
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 182 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 240
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 241 PFEHDEEI 248

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 137/346 (39%), Gaps = 80/346 (23%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR 147
           + L  +Y I   +G G FG V  C +   K+    K V+     +     EI +L  +AR
Sbjct: 1   KELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILN-IAR 59
Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           H       + +   F+    + ++FE + G  +++ +  +++     ++V  +  Q+ E+
Sbjct: 60  H----RNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYV-HQVCEA 114
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + F+H   + H D++PENI+             + +R            +SS IK+I+FG
Sbjct: 115 LQFLHSHNIGHFDIRPENII-------------YQTR------------RSSTIKIIEFG 149
Query: 267 ST-TFEHQDHSYVVSTR-HYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
                +  D+  ++ T   Y APEV      +   D+WS+G ++  L SG   F    N 
Sbjct: 150 QARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ 209
Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           +   ++E ++                      A   + + A    S+ A           
Sbjct: 210 Q---IIENIM---------------------NAEYTFDEEAFKEISIEA----------- 234
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCG 430
                      +D +  LL  +   R+ A EAL+HP+  + + R  
Sbjct: 235 -----------MDFVDRLLVKERKSRMTASEALQHPWLKQKIERVS 269

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 44/248 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD---- 149
           YR+L  +G+G F +V         + VA+KI+       +   +    LQ+L R      
Sbjct: 16  YRLLKTIGKGNFAKVKLARHILTGKEVAVKII-------DKTQLNSSSLQKLFREVRIMK 68
Query: 150 -IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            +     V++    +    + +V E   G  ++D+L   ++        R   RQ++ +V
Sbjct: 69  VLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLV--AHGRMKEKEARAKFRQIVSAV 126
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            + H+  ++H DLK EN+LL +   +K+ D+ F +                         
Sbjct: 127 QYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSN------------------------E 162
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHENLEH 326
            TF ++  ++  S   Y APE+  G  ++ P  D+WS+G IL  L SG   F   +NL+ 
Sbjct: 163 FTFGNKLDTFCGSP-PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG-QNLKE 220
Query: 327 LAMMERVL 334
           L   ERVL
Sbjct: 221 LR--ERVL 226

>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As Potent Pim-1 Inhibitors Length = 299

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 5   EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 64
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 65  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 119
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 120 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 154
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 155 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 213
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 214 PFEHDEEI 221

>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As Potent, Highly Selective And Orally Bioavailable Pim Kinases Inhibitors Length = 294

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 5   EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 64
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 65  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 119
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 120 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 154
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 155 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 213
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 214 PFEHDEEI 221

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 12  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 69
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 70  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 122
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ ++           +  + P S    L    
Sbjct: 123 LSYCHSKRVIHRDIKPENLLLGSAGELKIANF----------GWSVHAPSSRRTTL---- 168
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 169 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 216
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 217 YKRISRVEFTFP------------DFVTEGAR---------------------------- 236
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 237 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 265

>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Naphtho-Difuran Ligand Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 33  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 92
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 93  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 147
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 148 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 182
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 183 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 241
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 242 PFEHDEEI 249

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 37/231 (16%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR-- 147
            +  Y +  ++G+G F  V  C         A KI+ +    ++ +  +   L+R AR  
Sbjct: 4   FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINT----KKLSARDFQKLEREARIC 59
Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
             +     V++ +     +   +VF+ +  G    D + +  Y            +Q+LE
Sbjct: 60  RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEAD---ASHCIQQILE 116
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           S+A+ H   ++H +LKPEN+LL S                          K +A+KL DF
Sbjct: 117 SIAYCHSNGIVHRNLKPENLLLASK------------------------AKGAAVKLADF 152
Query: 266 GSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           G     +   ++     T  Y +PEV+    ++ P D+W+ G IL  L  G
Sbjct: 153 GLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG 203

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 44/248 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD---- 149
           YR+L  +G+G F +V         + VA+KI+       +   +    LQ+L R      
Sbjct: 9   YRLLKTIGKGNFAKVKLARHILTGKEVAVKII-------DKTQLNSSSLQKLFREVRIMK 61
Query: 150 -IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            +     V++    +    + +V E   G  ++D+L  + +        R   RQ++ +V
Sbjct: 62  VLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGW--MKEKEARAKFRQIVSAV 119
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            + H+  ++H DLK EN+LL +   +K+ D+ F +                         
Sbjct: 120 QYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSN------------------------E 155
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHENLEH 326
            TF ++  ++  S   Y APE+  G  ++ P  D+WS+G IL  L SG   F   +NL+ 
Sbjct: 156 FTFGNKLDTFCGSP-PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG-QNLKE 213
Query: 327 LAMMERVL 334
           L   ERVL
Sbjct: 214 LR--ERVL 219

>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With Ly333531 Length = 312

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 32  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 91
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 92  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 146
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 147 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 181
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 182 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 240
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 241 PFEHDEEI 248

>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Beta Carboline Ligand I Length = 314

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 33  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 92
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 93  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 147
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 148 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 182
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 183 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 241
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 242 PFEHDEEI 249

>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target Of Aberrant Somatic Hypermutations In Diffuse Large Cell Lymphoma Length = 293

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 4   EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 63
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 64  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 118
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 119 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 153
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 154 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 212
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 213 PFEHDEEI 220

>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 47  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 106
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 107 LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 161
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 162 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 196
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 197 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 255
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 256 PFEHDEEI 263

>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its Consensus Peptide Pimtide Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 32  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 91
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 92  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 146
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 147 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 181
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 182 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 240
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 241 PFEHDEEI 248

>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And The Jnk Inhibitor V Length = 314

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 33  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 92
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 93  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 147
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 148 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 182
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 183 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 241
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 242 PFEHDEEI 249

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH
Sbjct: 13  FEIGRPLGKGKFGNVYLAREKQSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 70
Query: 149 DIGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F     + ++ E   LG ++Y  L+K S   F          +L  +
Sbjct: 71  ----PNILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 123
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL SA  +K+ ++           +  + P S    L    
Sbjct: 124 LSYCHSKRVIHRDIKPENLLLGSAGELKIANF----------GWSVHAPSSRRTTL---- 169
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 170 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 217
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 218 YKRISRVEFTFP------------DFVTEGAR---------------------------- 237
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 238 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 266

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 37/231 (16%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR-- 147
            +  Y +  ++G+G F  V  C         A KI+ +    ++ +  +   L+R AR  
Sbjct: 3   FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINT----KKLSARDFQKLEREARIC 58
Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
             +     V++ +     +   +VF+ +  G    D + +  Y            +Q+LE
Sbjct: 59  RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEAD---ASHCIQQILE 115
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           S+A+ H   ++H +LKPEN+LL S                          K +A+KL DF
Sbjct: 116 SIAYCHSNGIVHRNLKPENLLLASK------------------------AKGAAVKLADF 151
Query: 266 GSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           G     +   ++     T  Y +PEV+    ++ P D+W+ G IL  L  G
Sbjct: 152 GLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG 202

>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With 4-(4- Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One Length = 328

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 47  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 106
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 107 LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 161
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 162 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 196
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 197 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 255
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 256 PFEHDEEI 263

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 41/223 (18%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIV----RSINKYREAAMIEIDVLQRLARHDIGG 152
           L ++G G+FG V    D    E+VAIK +    +  N+  +  + E+  LQ+L RH    
Sbjct: 20  LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL-RH---- 74
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
              +Q R  +   +   +V E    S  D L  +      +++   +    L+ +A++H 
Sbjct: 75  PNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIA-AVTHGALQGLAYLHS 133
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
             +IH D+K  NIL                           L +   +KL DFGS +   
Sbjct: 134 HNMIHRDVKAGNIL---------------------------LSEPGLVKLGDFGSASIMA 166
Query: 273 QDHSYVVSTRHYRAPEVILGLG---WNYPCDLWSVGCILVELC 312
             + + V T ++ APEVIL +    ++   D+WS+G   +EL 
Sbjct: 167 PANXF-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 208

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 21  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 74
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 75  LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 133
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 134 NYVHRDLAAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 180
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 181 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 34/246 (13%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDIG 151
           Y +   +G G    V   +   KKE VAIK +         +  + EI  + +    +I 
Sbjct: 12  YELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNI- 70
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLR----KNSYRSFPID--LVRELGRQLL 204
               V     F  ++ + +V + L G S+ D ++    K  ++S  +D   +  + R++L
Sbjct: 71  ----VSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVL 126
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           E + ++H+   IH D+K  NILL     V++ D+   +  +  G   +N  +        
Sbjct: 127 EGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRK------- 179
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHEN 323
               TF        V T  + APEV+  + G+++  D+WS G   +EL +G A +  +  
Sbjct: 180 ----TF--------VGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPP 227
Query: 324 LEHLAM 329
           ++ L +
Sbjct: 228 MKVLML 233

>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Pyrrolo[2,3- A]carbazole Ligand Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 33  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 92
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 93  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 147
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 148 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 182
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 183 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 241
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 242 PFEHDEEI 249

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 18  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 71
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+  + +   +  + ++  Q+   +A++  +
Sbjct: 72  LVQLYAVVS-EEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERM 130
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  +         IK            
Sbjct: 131 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEWTARQGAKFPIK------------ 177
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 178 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 227

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V++++ RH+    +
Sbjct: 21  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKI-RHE----K 74
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 75  LVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 133
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 180
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 181 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 37/231 (16%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR-- 147
            +  Y +  ++G+G F  V  C         A KI+ +    ++ +  +   L+R AR  
Sbjct: 4   FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINT----KKLSARDFQKLEREARIC 59
Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
             +     V++ +     +   +VF+ +  G    D + +  Y            +Q+LE
Sbjct: 60  RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEAD---ASHCIQQILE 116
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           S+A+ H   ++H +LKPEN+LL S                          K +A+KL DF
Sbjct: 117 SIAYCHSNGIVHRNLKPENLLLASK------------------------AKGAAVKLADF 152
Query: 266 GSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           G     +   ++     T  Y +PEV+    ++ P D+W+ G IL  L  G
Sbjct: 153 GLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG 203

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 37/231 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAAMIEID--VLQRLARHD 149
           + +L  +G G++ +V+     +   + A+K+V+   +N   +   ++ +  V ++ + H 
Sbjct: 7   FDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHP 66
Query: 150 --IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             +G   C Q  +    R    I +   G  ++   R+   R  P +  R    ++  ++
Sbjct: 67  FLVGLHSCFQTES----RLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLAL 119
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++HE  +I+ DLK +N+LL S  ++K+ DY       +                   G 
Sbjct: 120 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP------------------GD 161
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
           TT      S    T +Y APE++ G  + +  D W++G ++ E+ +G + F
Sbjct: 162 TT------SXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 206

>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567 Length = 296

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 26/244 (10%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           +YR+  K+G G+FG +    +    E VAIK+     K+ +     + +  +  +   GG
Sbjct: 10  KYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQ-----LHIESKFYKMMQGG 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
                I+      ++  +V E LGPSL D     S R F +  V  L  Q++  + ++H 
Sbjct: 65  VGIPSIKWCGAEGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHS 123
Query: 213 LRLIHTDLKPENILL---VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
              IH D+KP+N L+        V + D+  L++  +D    +++P              
Sbjct: 124 KNFIHRDVKPDNFLMGLGKKGNLVYIIDFG-LAKKYRDARTHQHIP-------------- 168
Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
             ++++  +  T  Y +    LG+  +   DL S+G +L+    G   +Q  +       
Sbjct: 169 --YRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK 226
Query: 330 MERV 333
            ER+
Sbjct: 227 YERI 230

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 46/226 (20%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARHDIGGTRC 155
           +GEG+F   V   +       AIKI+  R I K  +   +  E DV+ RL          
Sbjct: 38  LGEGSFSTTVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-------DHP 90
Query: 156 VQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
             ++ +F +++    +  + + K G  L  ++RK    SF     R    +++ ++ ++H
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNG-ELLKYIRKIG--SFDETCTRFYTAEIVSALEYLH 147
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
              +IH DLKPENILL    ++++ D+   K LS  SK                      
Sbjct: 148 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR------------------- 188
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  +  V T  Y +PE++         DLW++GCI+ +L +G
Sbjct: 189 ------ANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 44/248 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD---- 149
           YR+L  +G+G F +V         + VA++I+       +   +    LQ+L R      
Sbjct: 16  YRLLKTIGKGNFAKVKLARHILTGKEVAVRII-------DKTQLNSSSLQKLFREVRIMK 68
Query: 150 -IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            +     V++    +    + +V E   G  ++D+L   ++        R   RQ++ +V
Sbjct: 69  VLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLV--AHGRMKEKEARAKFRQIVSAV 126
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            + H+  ++H DLK EN+LL +   +K+ D+ F +  +     F N       KL +F  
Sbjct: 127 QYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFT-----FGN-------KLDEF-- 172
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHENLEH 326
                        +  Y APE+  G  ++ P  D+WS+G IL  L SG   F   +NL+ 
Sbjct: 173 -----------CGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG-QNLKE 220
Query: 327 LAMMERVL 334
           L   ERVL
Sbjct: 221 LR--ERVL 226

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 34/246 (13%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDIG 151
           Y +   +G G    V   +   KKE VAIK +         +  + EI  + +    +I 
Sbjct: 17  YELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNI- 75
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLR----KNSYRSFPID--LVRELGRQLL 204
               V     F  ++ + +V + L G S+ D ++    K  ++S  +D   +  + R++L
Sbjct: 76  ----VSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVL 131
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           E + ++H+   IH D+K  NILL     V++ D+   +  +  G   +N  +        
Sbjct: 132 EGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRK------- 184
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHEN 323
               TF        V T  + APEV+  + G+++  D+WS G   +EL +G A +  +  
Sbjct: 185 ----TF--------VGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPP 232
Query: 324 LEHLAM 329
           ++ L +
Sbjct: 233 MKVLML 238

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 21  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 74
Query: 155 CVQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +    L DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 75  LVQLYAVVS-EEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 133
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 180
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 181 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 122/285 (42%), Gaps = 42/285 (14%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G  G+V   + N   + VA+K ++  +   +A + E +++++L    +    
Sbjct: 16  KLVERLGAGQAGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLY 74
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V  +        I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ E 
Sbjct: 75  AVVTQE------PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER 128
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  NIL+      K+ D+  L+R  +D            IK            
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFG-LARLIEDAEXTAREGAKFPIK------------ 175
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE I    +    D+WS G +L E+ + G   +    N E +  +ER
Sbjct: 176 ----------WTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLER 225
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDW---PDGATSRDSMRAV 374
                  + ++R D   E+ ++   RL W   P+   + D +R+V
Sbjct: 226 ------GYRMVRPDNCPEELYQL-MRLCWKERPEDRPTFDYLRSV 263

>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor Length = 276

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 42/248 (16%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ 
Sbjct: 3   EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 62
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRE 198
           +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 63  LLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARS 117
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+             L+R               
Sbjct: 118 FFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE------------- 152
Query: 259 AIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEA 316
            +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+ 
Sbjct: 153 -LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 211
Query: 317 LFQTHENL 324
            F+  E +
Sbjct: 212 PFEHDEEI 219

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 37/231 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAAMIEID--VLQRLARHD 149
           + +L  +G G++ +V+     +   + A+K+V+   +N   +   ++ +  V ++ + H 
Sbjct: 22  FDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHP 81
Query: 150 --IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             +G   C Q  +    R    I +   G  ++   R+   R  P +  R    ++  ++
Sbjct: 82  FLVGLHSCFQTES----RLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLAL 134
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++HE  +I+ DLK +N+LL S  ++K+ DY       +                   G 
Sbjct: 135 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP------------------GD 176
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
           TT      S    T +Y APE++ G  + +  D W++G ++ E+ +G + F
Sbjct: 177 TT------SXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 221

>pdb|3KGA|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With A Potent 3-Aminopyrazole Atp Site Inhibitor Length = 299

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 61/239 (25%)
Query: 94  YRILSK-MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR--HDI 150
           Y++ S+ +G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++  H +
Sbjct: 19  YKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCPHIV 74
Query: 151 GGTRCVQI-RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
              R V +  N +  R  + IV E L G  L+  ++    ++F      E+ + + E++ 
Sbjct: 75  ---RIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQ 131
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-- 266
           ++H + + H D+KPEN+L  S    K P+                    + +KL DFG  
Sbjct: 132 YLHSINIAHRDVKPENLLYTS----KRPN--------------------AILKLTDFGFA 167
Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
             TT E  D S                      CD+WS+G I+  L  G   F ++  L
Sbjct: 168 KETTGEKYDKS----------------------CDMWSLGVIMYILLCGYPPFYSNHGL 204

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 108/258 (41%), Gaps = 36/258 (13%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           L +MG GT GQV +    +   ++A+K +R      E   I +D+   L  HD      V
Sbjct: 30  LGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDC--PYIV 87
Query: 157 QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR-L 215
           Q    F     + I  E +G +  + L+K      P  ++ ++   +++++ ++ E   +
Sbjct: 88  QCFGTFITNTDVFIAMELMG-TCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGV 146
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH D+KP NILL     +K+ D+    R   D                       + +D 
Sbjct: 147 IHRDVKPSNILLDERGQIKLCDFGISGRLVDD-----------------------KAKDR 183
Query: 276 SYVVSTRHYRAPEVI-----LGLGWNYPCDLWSVGCILVELCSGEALFQT-HENLEHLAM 329
           S   +   Y APE I         ++   D+WS+G  LVEL +G+  ++    + E L  
Sbjct: 184 SAGCAA--YMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTK 241
Query: 330 MERVLGP-LPHHMVIRAD 346
           + +   P LP HM    D
Sbjct: 242 VLQEEPPLLPGHMGFSGD 259

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 107/248 (43%), Gaps = 44/248 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD---- 149
           YR+L  +G+G F +V         + VA+KI+       +   +    LQ+L R      
Sbjct: 16  YRLLKTIGKGNFAKVKLARHILTGKEVAVKII-------DKTQLNSSSLQKLFREVRIMK 68
Query: 150 -IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            +     V++    +    + +V E   G  ++D+L   ++        R   RQ++ +V
Sbjct: 69  VLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLV--AHGRMKEKEARAKFRQIVSAV 126
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            + H+  ++H DLK EN+LL +   +K+ D+ F +                         
Sbjct: 127 QYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSN------------------------E 162
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHENLEH 326
            TF ++  ++      Y APE+  G  ++ P  D+WS+G IL  L SG   F   +NL+ 
Sbjct: 163 FTFGNKLDAF-CGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG-QNLKE 220
Query: 327 LAMMERVL 334
           L   ERVL
Sbjct: 221 LR--ERVL 226

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 11  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 64
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+  + +   +  + ++  Q+   +A++  +
Sbjct: 65  LVQLYAVVS-EEPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM 123
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D            IK            
Sbjct: 124 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEXTARQGAKFPIK------------ 170
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 171 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 220

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 44/248 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD---- 149
           YR+L  +G+G F +V         + VA++I+       +   +    LQ+L R      
Sbjct: 16  YRLLKTIGKGNFAKVKLARHILTGKEVAVRII-------DKTQLNSSSLQKLFREVRIMK 68
Query: 150 -IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            +     V++    +    + +V E   G  ++D+L   ++        R   RQ++ +V
Sbjct: 69  VLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLV--AHGRMKEKEARAKFRQIVSAV 126
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            + H+  ++H DLK EN+LL +   +K+ D+ F +                         
Sbjct: 127 QYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSN------------------------E 162
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHENLEH 326
            TF ++  ++  S   Y APE+  G  ++ P  D+WS+G IL  L SG   F   +NL+ 
Sbjct: 163 FTFGNKLDTFCGSP-PYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG-QNLKE 220
Query: 327 LAMMERVL 334
           L   ERVL
Sbjct: 221 LR--ERVL 226

>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine Length = 273

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 42/246 (17%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEIDVL 142
           L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ +L
Sbjct: 2   LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLL 61
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELG 200
           ++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R   
Sbjct: 62  KKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFF 116
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+LE+V   H   ++H D+K ENIL+             L+R                +
Sbjct: 117 WQVLEAVRHCHNXGVLHRDIKDENILID------------LNRGE--------------L 150
Query: 261 KLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALF 318
           KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+  F
Sbjct: 151 KLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPF 210
Query: 319 QTHENL 324
           +  E +
Sbjct: 211 EHDEEI 216

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 21  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 74
Query: 155 CVQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +    L DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 75  LVQLYAVVS-EEPIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 133
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D  Y         IK            
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTARQGAKFPIK------------ 180
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 181 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 14  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 73
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 74  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 129
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH +L   NIL+ +   VK+ D+       +D  Y+K   P  S I       
Sbjct: 130 YLGTKRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPI------- 182
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 183 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 211

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 38/221 (17%)
Query: 100 MGEGTFGQV-VECFD---NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGG 152
           +GEG FG+V + C+D   +   E+VA+K +++    ++R     EID+L+ L   H I  
Sbjct: 22  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKY 81
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL--GRQLLESVAFM 210
             C + +   +    + + +  LG SL D+L ++S     I L + L   +Q+ E +A++
Sbjct: 82  KGCCEDQG--EKSLQLVMEYVPLG-SLRDYLPRHS-----IGLAQLLLFAQQICEGMAYL 133
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H    IH +L   N+LL +   VK+ D+  L+++  +G  +  + +       D  S  F
Sbjct: 134 HSQHYIHRNLAARNVLLDNDRLVKIGDFG-LAKAVPEGHEYYRVRE-------DGDSPVF 185
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                        + APE +    + Y  D+WS G  L EL
Sbjct: 186 -------------WYAPECLKEYKFYYASDVWSFGVTLYEL 213

>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik) Length = 356

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 46/225 (20%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG+V    D +     A+K VR +  +R   +        +A   +   R V +
Sbjct: 81  RLGRGSFGEVHRMEDKQTGFQCAVKKVR-LEVFRAEEL--------MACAGLTSPRIVPL 131
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
                    + I  E L G SL   +++      P D       Q LE + ++H  R++H
Sbjct: 132 YGAVREGPWVNIFMELLEGGSLGQLVKEQG--CLPEDRALYYLGQALEGLEYLHSRRILH 189
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-- 275
            D+K +N+LL                 S DGS+           L DFG       D   
Sbjct: 190 GDVKADNVLL-----------------SSDGSH---------AALCDFGHAVCLQPDGLG 223
Query: 276 ------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  Y+  T  + APEV+LG   +   D+WS  C+++ + +G
Sbjct: 224 KDLLTGDYIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNG 268

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 38/221 (17%)
Query: 100 MGEGTFGQV-VECFD---NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGG 152
           +GEG FG+V + C+D   +   E+VA+K +++    ++R     EID+L+ L   H I  
Sbjct: 22  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKY 81
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL--GRQLLESVAFM 210
             C + +   +    + + +  LG SL D+L ++S     I L + L   +Q+ E +A++
Sbjct: 82  KGCCEDQG--EKSLQLVMEYVPLG-SLRDYLPRHS-----IGLAQLLLFAQQICEGMAYL 133
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H    IH +L   N+LL +   VK+ D+  L+++  +G  +  + +       D  S  F
Sbjct: 134 HAQHYIHRNLAARNVLLDNDRLVKIGDFG-LAKAVPEGHEYYRVRE-------DGDSPVF 185
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                        + APE +    + Y  D+WS G  L EL
Sbjct: 186 -------------WYAPECLKEYKFYYASDVWSFGVTLYEL 213

>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik) Length = 371

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 46/225 (20%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG+V    D +     A+K VR +  +R   +        +A   +   R V +
Sbjct: 100 RLGRGSFGEVHRMEDKQTGFQCAVKKVR-LEVFRAEEL--------MACAGLTSPRIVPL 150
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
                    + I  E L G SL   +++      P D       Q LE + ++H  R++H
Sbjct: 151 YGAVREGPWVNIFMELLEGGSLGQLVKEQG--CLPEDRALYYLGQALEGLEYLHSRRILH 208
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-- 275
            D+K +N+LL                 S DGS+           L DFG       D   
Sbjct: 209 GDVKADNVLL-----------------SSDGSH---------AALCDFGHAVCLQPDGLG 242
Query: 276 ------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  Y+  T  + APEV+LG   +   D+WS  C+++ + +G
Sbjct: 243 KSLLTGDYIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNG 287

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 103/231 (44%), Gaps = 37/231 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAAMIEID--VLQRLARHD 149
           + +L  +G G++ +V+     +   + A+++V+   +N   +   ++ +  V ++ + H 
Sbjct: 54  FDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHP 113
Query: 150 --IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             +G   C Q  +    R    I +   G  ++   R+   R  P +  R    ++  ++
Sbjct: 114 FLVGLHSCFQTES----RLFFVIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLAL 166
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++HE  +I+ DLK +N+LL S  ++K+ DY       + G                  +
Sbjct: 167 NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT----------------T 210
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
           +TF          T +Y APE++ G  + +  D W++G ++ E+ +G + F
Sbjct: 211 STF--------CGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 253

>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors Length = 273

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 42/246 (17%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEIDVL 142
           L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ +L
Sbjct: 2   LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLL 61
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELG 200
           ++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R   
Sbjct: 62  KKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFF 116
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+LE+V   H   ++H D+K ENIL+             L+R                +
Sbjct: 117 WQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE--------------L 150
Query: 261 KLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALF 318
           KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+  F
Sbjct: 151 KLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPF 210
Query: 319 QTHENL 324
           +  E +
Sbjct: 211 EHDEEI 216

>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7- Azaindole Length = 273

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 109/246 (44%), Gaps = 42/246 (17%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREA-----AMIEIDVL 142
           L  +Y++   +G G FG V           VAIK V    I+ + E        +E+ +L
Sbjct: 2   LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLL 61
Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELG 200
           ++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R   
Sbjct: 62  KKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFF 116
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+LE+V   H   ++H D+K ENIL+             L+R                +
Sbjct: 117 WQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE--------------L 150
Query: 261 KLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALF 318
           KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++  G+  F
Sbjct: 151 KLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPF 210
Query: 319 QTHENL 324
           +  E +
Sbjct: 211 EHDEEI 216

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 107/248 (43%), Gaps = 44/248 (17%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD---- 149
           YR+L  +G+G F +V         + VA+KI+       +   +    LQ+L R      
Sbjct: 16  YRLLKTIGKGNFAKVKLARHILTGKEVAVKII-------DKTQLNSSSLQKLFREVRIXK 68
Query: 150 -IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            +     V++    +    + +V E   G  ++D+L   ++        R   RQ++ +V
Sbjct: 69  VLNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLV--AHGRXKEKEARAKFRQIVSAV 126
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            + H+  ++H DLK EN+LL +   +K+ D+ F +  +     F N       KL  F  
Sbjct: 127 QYCHQKFIVHRDLKAENLLLDADXNIKIADFGFSNEFT-----FGN-------KLDAF-- 172
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHENLEH 326
                           Y APE+  G  ++ P  D+WS+G IL  L SG   F   +NL+ 
Sbjct: 173 -----------CGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG-QNLKE 220
Query: 327 LAMMERVL 334
           L   ERVL
Sbjct: 221 L--RERVL 226

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 129/339 (38%), Gaps = 92/339 (27%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARH 148
           + I   +G+G FG V    +   K ++A+K++       E A +E  +     +Q   RH
Sbjct: 10  FEIGRPLGKGKFGNVYLAREKNSKFILALKVL--FKAQLEKAGVEHQLRREVEIQSHLRH 67
Query: 149 DIGGTRCVQIRNWF--DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
                  +++  +F    R ++ + +  LG ++Y  L+K S   F          +L  +
Sbjct: 68  ----PNILRLYGYFHDSTRVYLILEYAPLG-TVYRELQKLS--KFDEQRTATYITELANA 120
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  ++IH D+KPEN+LL SA  +K+ D+           +  + P S    L    
Sbjct: 121 LSYCHSKKVIHRDIKPENLLLGSAGELKIADF----------GWSVHAPSSRRAAL---- 166
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                         T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   + 
Sbjct: 167 ------------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQDT 214
Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P             +   GAR                            
Sbjct: 215 YKRISRVEFTFP------------DFVTEGAR---------------------------- 234
Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     DL+  LL+++P++R   RE L HP+ T +
Sbjct: 235 ----------DLISRLLKHNPSQRPMLREVLEHPWITAN 263

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 51/234 (21%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTR 154
           L ++G G +G V +       +++A+K +RS    K ++  ++++DV+ R        + 
Sbjct: 27  LGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMR-------SSD 79
Query: 155 CVQIRNWFD--YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE--LGRQLLESVAFM 210
           C  I  ++   +R   C +  +L  + +D   K  Y S   D++ E  LG+  L +V  +
Sbjct: 80  CPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVY-SVLDDVIPEEILGKITLATVKAL 138
Query: 211 H----ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +     L++IH D+KP NILL                            +S  IKL DFG
Sbjct: 139 NHLKENLKIIHRDIKPSNILL---------------------------DRSGNIKLCDFG 171
Query: 267 ST--TFEHQDHSYVVSTRHYRAPEVI----LGLGWNYPCDLWSVGCILVELCSG 314
            +    +    +     R Y APE I       G++   D+WS+G  L EL +G
Sbjct: 172 ISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATG 225

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 38/223 (17%)
Query: 100 MGEGTFGQV-VECFD---NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGG 152
           +GEG FG+V + C+D   +   E+VA+K +++    ++R     EID+L+ L   H I  
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKY 98
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL--GRQLLESVAFM 210
             C +       +  + + +  LG SL D+L ++S     I L + L   +Q+ E +A++
Sbjct: 99  KGCCEDAGAASLQ--LVMEYVPLG-SLRDYLPRHS-----IGLAQLLLFAQQICEGMAYL 150
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H    IH DL   N+LL +   VK+ D+  L+++  +G     + +       D  S  F
Sbjct: 151 HAQHYIHRDLAARNVLLDNDRLVKIGDFG-LAKAVPEGHEXYRVRE-------DGDSPVF 202
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                        + APE +    + Y  D+WS G  L EL +
Sbjct: 203 -------------WYAPECLKEYKFYYASDVWSFGVTLYELLT 232

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 32/240 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 21  RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 74
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            VQ+         I IV E +   SL DFL+    +   +  + ++  Q+   +A++  +
Sbjct: 75  LVQLYAVVS-EEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM 133
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL+  NIL+      KV D+  L+R  +D            IK            
Sbjct: 134 NYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEXTARQGAKFPIK------------ 180
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     + APE  L   +    D+WS G +L EL + G   +    N E L  +ER
Sbjct: 181 ----------WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVER 230

>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A Ruthenium Organometallic Ligand Ru1 Length = 312

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 113/276 (40%), Gaps = 55/276 (19%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR-------SINKYREAAMIEID 140
           E     YR+   +G+G FG V        +  VAIK++        S         +E+ 
Sbjct: 27  EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVA 86
Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS--LYDFL-RKNSYRSFPIDLVR 197
           +L ++     G    +++ +WF+ +    +V E+  P+  L+D++  K      P    R
Sbjct: 87  LLWKVGAGG-GHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGP---SR 142
Query: 198 ELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKS 257
               Q++ ++   H   ++H D+K ENIL+                         +L + 
Sbjct: 143 CFFGQVVAAIQHCHSRGVVHRDIKDENILI-------------------------DLRRG 177
Query: 258 SAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGE 315
            A KLIDFGS    H + ++    TR Y  PE I    ++  P  +WS+G +L ++  G+
Sbjct: 178 CA-KLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGD 236
Query: 316 ALFQ-------------THENLEHLAMMERVLGPLP 338
             F+              H + +  A++ R L P P
Sbjct: 237 IPFERDQEILEAELHFPAHVSPDCCALIRRCLAPKP 272

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 45/243 (18%)
Query: 98  SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE---AAMIEIDVLQRLARHDIGGTR 154
           +++G G+FG V   +  +    VA+KI++ ++   E   A   E+ VL++        TR
Sbjct: 42  TRIGSGSFGTV---YKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRK--------TR 90
Query: 155 CVQIRNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
            V I  +  Y  ++++ IV +   G SLY  L     + F +  + ++ RQ  + + ++H
Sbjct: 91  HVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETK-FQMFQLIDIARQTAQGMDYLH 149
Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK-DGSYFKNLPKSSAIKLIDFGSTTF 270
              +IH D+K  NI L     VK+ D+   +  S+  GS     P  S +          
Sbjct: 150 AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVL---------- 199
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                        + APEVI     N   +  D++S G +L EL +GE  +    N + +
Sbjct: 200 -------------WMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI 246
Query: 328 AMM 330
             M
Sbjct: 247 IFM 249

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 25/117 (21%)
Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
           L  EL  Q+ + V ++H  +LIH DLKP NI LV  + VK+ D+  ++    DG   ++ 
Sbjct: 137 LALELFEQITKGVDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRS- 195
Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                                     T  Y +PE I    +    DL+++G IL EL
Sbjct: 196 ------------------------KGTLRYMSPEQISSQDYGKEVDLYALGLILAEL 228

>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase (gak) Length = 337

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 101/247 (40%), Gaps = 55/247 (22%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLARH--- 148
           R R+   + EG F  V E  D       A+K + S  + +  A+I E+  +++L+ H   
Sbjct: 29  RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNI 88
Query: 149 -DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRS-FPIDLVRELGRQLLES 206
                   +        +    ++ E     L +FL+K   R     D V ++  Q   +
Sbjct: 89  VQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRA 148
Query: 207 VAFMHELR--LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           V  MH  +  +IH DLK EN+LL                 S  G+          IKL D
Sbjct: 149 VQHMHRQKPPIIHRDLKVENLLL-----------------SNQGT----------IKLCD 181
Query: 265 FGS-TTFEH-QDHSYVV-------------STRHYRAPEVILGLGWNYPC----DLWSVG 305
           FGS TT  H  D+S+               +T  YR PE+I  L  N+P     D+W++G
Sbjct: 182 FGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII-DLYSNFPIGEKQDIWALG 240
Query: 306 CILVELC 312
           CIL  LC
Sbjct: 241 CILYLLC 247

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 98/242 (40%), Gaps = 37/242 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           + IL  +G G F +V      +  ++ A+KI   +NK+      E+   +      + G 
Sbjct: 63  FEILKVIGRGAFSEVAVVKMKQTGQVYAMKI---MNKWDMLKRGEVSCFREERDVLVNGD 119
Query: 154 R--CVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           R    Q+   F   N++ +V E  +G  L   L K   R  P ++ R    +++ ++  +
Sbjct: 120 RRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGER-IPAEMARFYLAEIVMAIDSV 178
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H L  +H D+KP+NILL    ++++ D+         GS  K     +   L+       
Sbjct: 179 HRLGYVHRDIKPDNILLDRCGHIRLADF---------GSCLKLRADGTVRSLV------- 222
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNY-------PCDLWSVGCILVELCSGEALFQTHEN 323
                   V T  Y +PE++  +G           CD W++G    E+  G+  F     
Sbjct: 223 -------AVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADST 275
Query: 324 LE 325
            E
Sbjct: 276 AE 277

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 143/391 (36%), Gaps = 134/391 (34%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKI-----VRSIN-KYREAAMIEIDVLQ 143
           L  +Y +   +G+G++G V    +N+ + + AIKI     +R IN K  E    E+ +++
Sbjct: 24  LQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMK 83
Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLR---KNSYRSFPIDLVR-- 197
           +L   +I      ++   ++   +IC+V E   G  L D L     +S     +D+V+  
Sbjct: 84  KLHHPNIA-----RLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQ 138
Query: 198 ---------------------------------ELGRQLLESVAFMHELRLIHTDLKPEN 224
                                             + RQ+  ++ ++H   + H D+KPEN
Sbjct: 139 ICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPEN 198
Query: 225 ILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-STTF------EHQDHSY 277
            L  +                          KS  IKL+DFG S  F      E+   + 
Sbjct: 199 FLFSTN-------------------------KSFEIKLVDFGLSKEFYKLNNGEYYGMTT 233
Query: 278 VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLG 335
              T ++ APEV+     +Y   CD WS G +L                 HL +M  V  
Sbjct: 234 KAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLL-----------------HLLLMGAV-- 274
Query: 336 PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL 395
           P P                         G    D++  V        L  ++ +++    
Sbjct: 275 PFP-------------------------GVNDADTISQVLN----KKLCFENPNYNVLSP 305
Query: 396 I--DLLQGLLRYDPAERLKAREALRHPFFTR 424
           +  DLL  LL  +  ER  A  AL+HP+ ++
Sbjct: 306 LARDLLSNLLNRNVDERFDAMRALQHPWISQ 336

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           +++ F H+  +IH D+KP NIL+ +   VKV D+                    A  + D
Sbjct: 127 QALNFSHQNGIIHRDVKPANILISATNAVKVVDFGI------------------ARAIAD 168
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            G++  +    + V+ T  Y +PE   G   +   D++S+GC+L E+ +GE  F
Sbjct: 169 SGNSVXQ---TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPF 219

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 35/232 (15%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQ 143
           +GE     +  +S++G G  G V +        ++A K++    K   R   + E+ VL 
Sbjct: 62  VGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL- 120
Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
               H+      V     F     I I  E +     D + K + R  P  ++ ++   +
Sbjct: 121 ----HECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSIAV 175
Query: 204 LESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           ++ + ++ E  +++H D+KP NIL+ S   +K+ D+                    + +L
Sbjct: 176 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV------------------SGQL 217
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           ID  + +F        V TR Y +PE + G  ++   D+WS+G  LVE+  G
Sbjct: 218 IDSMANSF--------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 261

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 23/144 (15%)
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           +++ F H+  +IH D+KP NI++ +   VKV D+                    A  + D
Sbjct: 127 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI------------------ARAIAD 168
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHE 322
            G++  +    + V+ T  Y +PE   G   +   D++S+GC+L E+ +GE  F   + +
Sbjct: 169 SGNSVTQ---TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPD 225
Query: 323 NLEHLAMMERVLGPLPHHMVIRAD 346
           ++ +  + E  + P   H  + AD
Sbjct: 226 SVAYQHVREDPIPPSARHEGLSAD 249

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 35/232 (15%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQ 143
           +GE     +  +S++G G  G V +        ++A K++    K   R   + E+ VL 
Sbjct: 27  VGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL- 85
Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
               H+      V     F     I I  E +     D + K + R  P  ++ ++   +
Sbjct: 86  ----HECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSIAV 140
Query: 204 LESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           ++ + ++ E  +++H D+KP NIL+ S   +K+ D+                    + +L
Sbjct: 141 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDF------------------GVSGQL 182
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           ID  + +F        V TR Y +PE + G  ++   D+WS+G  LVE+  G
Sbjct: 183 IDSMANSF--------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 226

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 46/289 (15%)
Query: 100 MGEGTFGQVVEC-FDNE---KKELVAIKIVRSINKYREAAMI--EIDVLQRLARHDIGGT 153
           +GEG FG+V  C +D E     E VA+K ++  +     A +  EI++L+ L   +I   
Sbjct: 29  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 88
Query: 154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL--GRQLLESVAFM 210
           + +      D  N I ++ E L   SL ++L KN  +   I+L ++L    Q+ + + ++
Sbjct: 89  KGICTE---DGGNGIKLIMEFLPSGSLKEYLPKNKNK---INLKQQLKYAVQICKGMDYL 142
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
              + +H DL   N+L+ S   VK+ D+                  + AI+      T  
Sbjct: 143 GSRQYVHRDLAARNVLVESEHQVKIGDFGL----------------TKAIETDKEXXTVK 186
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           + +D     S   + APE ++   +    D+WS G  L EL     L     +   +A+ 
Sbjct: 187 DDRD-----SPVFWYAPECLMQSKFYIASDVWSFGVTLHEL-----LTYCDSDSSPMALF 236
Query: 331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR--DSMRAVWKL 377
            +++GP    M +    R     + G RL  P          MR  W+ 
Sbjct: 237 LKMIGPTHGQMTV---TRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEF 282

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 101/246 (41%), Gaps = 42/246 (17%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARHDIGGTR 154
           +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH      
Sbjct: 20  LGKGKFGNVYLARERQSKFILALKVL--FKTQLEKAGVEHQLRREVEIQSHLRH----PN 73
Query: 155 CVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            +++  +F     + ++ E   LG ++Y  L+K S   F          +L  ++++ H 
Sbjct: 74  ILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--RFDEQRTATYITELANALSYCHS 130
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
            R+IH D+KPEN+LL S   +K+ D+           +  + P S    L          
Sbjct: 131 KRVIHRDIKPENLLLGSNGELKIADF----------GWSVHAPSSRRTTL---------- 170
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER 332
                   T  Y  PE+I G   +   DLWS+G +  E   G   F+ H   E    + R
Sbjct: 171 ------CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYRRISR 224
Query: 333 VLGPLP 338
           V    P
Sbjct: 225 VEFTFP 230

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 35/234 (14%)
Query: 84  FAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDV 141
            A+GE     +  +S++G G  G V +        ++A K++    K   R   + E+ V
Sbjct: 1   MALGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQV 60
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGR 201
           L     H+      V     F     I I  E +     D + K + R  P  ++ ++  
Sbjct: 61  L-----HECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSI 114
Query: 202 QLLESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            +++ + ++ E  +++H D+KP NIL+ S   +K+ D+                    + 
Sbjct: 115 AVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV------------------SG 156
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           +LID  +  F        V TR Y +PE + G  ++   D+WS+G  LVE+  G
Sbjct: 157 QLIDEMANEF--------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 202

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           +++ F H+  +IH D+KP NI++ +   VKV D+                    A  + D
Sbjct: 127 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI------------------ARAIAD 168
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            G++  +    + V+ T  Y +PE   G   +   D++S+GC+L E+ +GE  F
Sbjct: 169 SGNSVTQ---TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPF 219

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           +++ F H+  +IH D+KP NI++ +   VKV D+                    A  + D
Sbjct: 127 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI------------------ARAIAD 168
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            G++  +    + V+ T  Y +PE   G   +   D++S+GC+L E+ +GE  F
Sbjct: 169 SGNSVTQ---TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPF 219

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 113/262 (43%), Gaps = 48/262 (18%)
Query: 66  PRTGSPPWRPDDKDGHYVFAIG--------ENLTPRYRILSKMGEGTFGQVVECFDNEKK 117
           P+T S P  P D D     +IG        ++L P    + ++G G +G V +       
Sbjct: 23  PQTSSTP--PRDLDSKACISIGNQNFEVKADDLEP----IMELGRGAYGVVEKMRHVPSG 76
Query: 118 ELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP 177
           +++A+K +R+    +E   + +D+   ++   +     V           + I  E +  
Sbjct: 77  QIMAVKRIRATVNSQEQKRLLMDL--DISMRTVDCPFTVTFYGALFREGDVWICMELMDT 134
Query: 178 SLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPENILLVSAEYVK 234
           SL  F ++  +  ++ P D++ ++   +++++  +H +L +IH D+KP N+L+ +   VK
Sbjct: 135 SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVK 194
Query: 235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVI---- 290
           + D+           Y  +    S  K ID G               + Y APE I    
Sbjct: 195 MCDFGI-------SGYLVD----SVAKTIDAG--------------CKPYMAPERINPEL 229
Query: 291 LGLGWNYPCDLWSVGCILVELC 312
              G++   D+WS+G  ++EL 
Sbjct: 230 NQKGYSVKSDIWSLGITMIELA 251

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 121/289 (41%), Gaps = 46/289 (15%)
Query: 100 MGEGTFGQVVEC-FDNE---KKELVAIKIVRSINKYREAAMI--EIDVLQRLARHDIGGT 153
           +GEG FG+V  C +D E     E VA+K ++  +     A +  EI++L+ L   +I   
Sbjct: 17  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 76
Query: 154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL--GRQLLESVAFM 210
           + +      D  N I ++ E L   SL ++L KN  +   I+L ++L    Q+ + + ++
Sbjct: 77  KGICTE---DGGNGIKLIMEFLPSGSLKEYLPKNKNK---INLKQQLKYAVQICKGMDYL 130
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
              + +H DL   N+L+ S   VK+ D+                  + AI+      T  
Sbjct: 131 GSRQYVHRDLAARNVLVESEHQVKIGDFGL----------------TKAIETDKEXXTVK 174
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           + +D     S   + APE ++   +    D+WS G  L EL     L     +   +A+ 
Sbjct: 175 DDRD-----SPVFWYAPECLMQSKFYIASDVWSFGVTLHEL-----LTYCDSDSSPMALF 224
Query: 331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR--DSMRAVWKL 377
            +++GP    M +    R     + G RL  P          MR  W+ 
Sbjct: 225 LKMIGPTHGQMTV---TRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEF 270

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 37/231 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIG 151
           + +  ++G G FG V+     +  E VAIK  R     K RE   +EI ++++L   ++ 
Sbjct: 16  WEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVV 75
Query: 152 GTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRK----NSYRSFPIDLVRELGRQLLE 205
             R V         N + ++  +   G  L  +L +       +  PI   R L   +  
Sbjct: 76  SAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPI---RTLLSDISS 132
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++ ++HE R+IH DLKPENI+L                           P+    K+ID 
Sbjct: 133 ALRYLHENRIIHRDLKPENIVLQPG------------------------PQRLIHKIIDL 168
Query: 266 GSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           G      Q    +  V T  Y APE++    +    D WS G +  E  +G
Sbjct: 169 GYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITG 219

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           +++ F H+  +IH D+KP NI++ +   VKV D+                    A  + D
Sbjct: 127 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI------------------ARAIAD 168
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            G++  +    + V+ T  Y +PE   G   +   D++S+GC+L E+ +GE  F
Sbjct: 169 SGNSVTQ---TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPF 219

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 90/243 (37%), Gaps = 61/243 (25%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIG 151
           + +  ++G G FG V+     +  E VAIK  R     K RE   +EI ++++L   ++ 
Sbjct: 17  WEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVV 76
Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPS------------------LYDFLRKNSYRSFPI 193
             R             +    +KL P+                  L  F      +  PI
Sbjct: 77  SAR------------EVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPI 124
Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
              R L   +  ++ ++HE R+IH DLKPENI+L                          
Sbjct: 125 ---RTLLSDISSALRYLHENRIIHRDLKPENIVLQPG----------------------- 158
Query: 254 LPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
            P+    K+ID G      Q    +  V T  Y APE++    +    D WS G +  E 
Sbjct: 159 -PQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFEC 217
Query: 312 CSG 314
            +G
Sbjct: 218 ITG 220

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 40/243 (16%)
Query: 74  RPDDKDGHYVFAIGENLTPR--YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY 131
           +P DKD   +        PR   +++ ++G G FG+V   + N   + VA+K ++     
Sbjct: 1   KPWDKDAWEI--------PRESIKLVKRLGAGQFGEVWMGYYNNSTK-VAVKTLKPGTMS 51
Query: 132 REAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRS 190
            +A + E ++++ L +HD    + V++         I I+ E +   SL DFL+ +    
Sbjct: 52  VQAFLEEANLMKTL-QHD----KLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGK 106
Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
             +  + +   Q+ E +A++     IH DL+  N+L+  +   K+ D+  L+R  +D  Y
Sbjct: 107 VLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFG-LARVIEDNEY 165
Query: 251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
                    IK                      + APE I    +    D+WS G +L E
Sbjct: 166 TAREGAKFPIK----------------------WTAPEAINFGCFTIKSDVWSFGILLYE 203
Query: 311 LCS 313
           + +
Sbjct: 204 IVT 206

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 128/337 (37%), Gaps = 74/337 (21%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           +GEG   +V  C +    +  A+KI+ +     R     E+++L +   H       +++
Sbjct: 21  LGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGH----RNVLEL 76
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
             +F+  +   +VFEK+ G S+   + K   R F       + + +  ++ F+H   + H
Sbjct: 77  IEFFEEEDRFYLVFEKMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHNKGIAH 134
Query: 218 TDLKPENILLV---SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
            DLKPENIL         VK+ D+   S    +G      P S+   L   GS       
Sbjct: 135 RDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS---PISTPELLTPCGSA------ 185
Query: 275 HSYVVSTRHYRAPEVILGLG-----WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
                    Y APEV+         ++  CDLWS+G IL  L SG   F           
Sbjct: 186 --------EYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPF----------- 226
Query: 330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR-----LPNLI 384
                                   R G+   W  G         +++ ++      P+  
Sbjct: 227 ----------------------VGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKD 264
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
             H+  +A DLI     LL  D  +RL A + L+HP+
Sbjct: 265 WAHISCAAKDLIS---KLLVRDAKQRLSAAQVLQHPW 298

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           +++ F H+  +IH D+KP NI++ +   VKV D+                    A  + D
Sbjct: 144 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI------------------ARAIAD 185
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
            G++  +    + V+ T  Y +PE   G   +   D++S+GC+L E+ +GE  F
Sbjct: 186 SGNSVTQ---TAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPF 236

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 103/255 (40%), Gaps = 58/255 (22%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEID-------VLQRLA 146
           YR+   +G+G F +V              K+ R +   RE A+  ID        LQ+L 
Sbjct: 17  YRLQKTIGKGNFAKV--------------KLARHVLTGREVAVKIIDKTQLNPTSLQKLF 62
Query: 147 RHD-----IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELG 200
           R       +     V++    +    + +V E   G  ++D+L   ++        R   
Sbjct: 63  REVRIMKILNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLV--AHGRMKEKEARAKF 120
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           RQ++ +V + H+  ++H DLK EN+LL     +K+ D+ F S     G+       S   
Sbjct: 121 RQIVSAVQYCHQKYIVHRDLKAENLLLDGDMNIKIADFGF-SNEFTVGNKLDTFCGSPP- 178
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQ 319
                                  Y APE+  G  ++ P  D+WS+G IL  L SG   F 
Sbjct: 179 -----------------------YAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFD 215
Query: 320 THENLEHLAMMERVL 334
             +NL+ L   ERVL
Sbjct: 216 G-QNLKELR--ERVL 227

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 92/232 (39%), Gaps = 44/232 (18%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           ++ +  +G G FGQV +       +   IK V+  N   E A  E+  L +L   +I   
Sbjct: 13  FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKLDHVNI--V 67
Query: 154 RCVQIRNWFDY----------RNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVREL 199
                 + FDY          R+    +F ++      +L  ++ K         L  EL
Sbjct: 68  HYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALEL 127
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+ + V ++H  +LI+ DLKP NI LV  + VK+ D+  ++    DG   ++      
Sbjct: 128 FEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRXRS------ 181
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                                T  Y +PE I    +    DL+++G IL EL
Sbjct: 182 -------------------KGTLRYMSPEQISSQDYGKEVDLYALGLILAEL 214

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 109/253 (43%), Gaps = 41/253 (16%)
Query: 85  AIGENLTPR-----YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAA 135
            IG N + R     +  +  +G+G+FG+V+     E  +L A+K+++      +   E  
Sbjct: 11  GIGVNSSNRLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECT 70
Query: 136 MIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID 194
           M E  +L     H        Q+   F   + +  V E + G  L   ++K+  R F   
Sbjct: 71  MTEKRILSLARNHPF----LTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKS--RRFDEA 124
Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
             R    +++ ++ F+H+  +I+ DLK +N+LL    + K+ D+       K+G      
Sbjct: 125 RARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGM----CKEG------ 174
Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                   I  G TT      +    T  Y APE++  + +    D W++G +L E+  G
Sbjct: 175 --------ICNGVTT------ATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCG 220
Query: 315 EALFQTHENLEHL 327
            A F+  EN + L
Sbjct: 221 HAPFEA-ENEDDL 232

>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g Length = 316

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 128/337 (37%), Gaps = 74/337 (21%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIV-RSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           +GEG   +V  C +    +  A+KI+ +     R     E+++L +   H       +++
Sbjct: 21  LGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGH----RNVLEL 76
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
             +F+  +   +VFEK+ G S+   + K   R F       + + +  ++ F+H   + H
Sbjct: 77  IEFFEEEDRFYLVFEKMRGGSILSHIHKR--RHFNELEASVVVQDVASALDFLHNKGIAH 134
Query: 218 TDLKPENILLV---SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
            DLKPENIL         VK+ D+   S    +G      P S+   L   GS       
Sbjct: 135 RDLKPENILCEHPNQVSPVKICDFGLGSGIKLNGDCS---PISTPELLTPCGSA------ 185
Query: 275 HSYVVSTRHYRAPEVILGLG-----WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
                    Y APEV+         ++  CDLWS+G IL  L SG   F           
Sbjct: 186 --------EYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPF----------- 226
Query: 330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR-----LPNLI 384
                                   R G+   W  G         +++ ++      P+  
Sbjct: 227 ----------------------VGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKD 264
Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
             H+  +A DLI     LL  D  +RL A + L+HP+
Sbjct: 265 WAHISCAAKDLIS---KLLVRDAKQRLSAAQVLQHPW 298

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 16  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 75
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 76  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 131
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 132 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 184
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 185 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 213

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 44  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 103
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 104 IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 159
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 160 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 212
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 213 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 241

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 100/247 (40%), Gaps = 44/247 (17%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-----LQRLARHDIGGTR 154
           +G+G FG V    + + K ++A+K++       E A +E  +     +Q   RH      
Sbjct: 20  LGKGKFGNVYLARERQSKFILALKVL--FKTQLEKAGVEHQLRREVEIQSHLRH----PN 73
Query: 155 CVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            +++  +F     + ++ E   LG ++Y  L+K S   F          +L  ++++ H 
Sbjct: 74  ILRLYGYFHDATRVYLILEYAPLG-TVYRELQKLS--RFDEQRTATYITELANALSYCHS 130
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-STTFE 271
            R+IH D+KPEN+LL S                           +  +K+ DFG S    
Sbjct: 131 KRVIHRDIKPENLLLGS---------------------------NGELKIADFGWSVHAP 163
Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMME 331
                 +  T  Y  PE+I G   +   DLWS+G +  E   G   F+ H   E    + 
Sbjct: 164 SSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPFEAHTYQETYRRIS 223
Query: 332 RVLGPLP 338
           RV    P
Sbjct: 224 RVEFTFP 230

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 18  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 77
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 78  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 133
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 134 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 186
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 187 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 215

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 17  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 76
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 77  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 132
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 133 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 185
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 186 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 214

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 20  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 79
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 80  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 135
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 136 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 188
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 189 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 217

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 19  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 78
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 79  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 134
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 135 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 187
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 188 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 216

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 31  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 90
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 91  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 146
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 147 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 199
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 200 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 228

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 31  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 90
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 91  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 146
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 147 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 199
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 200 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 228

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 35/232 (15%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQ 143
           +GE     +  +S++G G  G V +        ++A K++    K   R   + E+ VL 
Sbjct: 19  VGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL- 77
Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
               H+      V     F     I I  E +     D + K + R  P  ++ ++   +
Sbjct: 78  ----HECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSIAV 132
Query: 204 LESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           ++ + ++ E  +++H D+KP NIL+ S   +K+ D+                    + +L
Sbjct: 133 IKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGV------------------SGQL 174
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           ID  + +F        V TR Y +PE + G  ++   D+WS+G  LVE+  G
Sbjct: 175 IDSMANSF--------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 218

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 44/259 (16%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR----EAAMIEIDV 141
           +GE+    +R+L   G G FG+V  C      +L A K +      +    + AM+E  +
Sbjct: 182 MGEDWFLDFRVL---GRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKI 238
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS-----LYDFLRKNSYRSFPIDLV 196
           L ++    I     V +   F+ +  +C+V   +        +Y+    N     P  + 
Sbjct: 239 LAKVHSRFI-----VSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIF 293
Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
                Q++  +  +H+  +I+ DLKPEN+LL     V++ D                   
Sbjct: 294 YT--AQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGL---------------- 335
Query: 257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA 316
             A++L    + T  +        T  + APE++LG  +++  D +++G  L E+ +   
Sbjct: 336 --AVELKAGQTKTKGY------AGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARG 387
Query: 317 LFQTH-ENLEHLAMMERVL 334
            F+   E +E+  + +RVL
Sbjct: 388 PFRARGEKVENKELKQRVL 406

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 44/259 (16%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR----EAAMIEIDV 141
           +GE+    +R+L   G G FG+V  C      +L A K +      +    + AM+E  +
Sbjct: 182 MGEDWFLDFRVL---GRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKI 238
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS-----LYDFLRKNSYRSFPIDLV 196
           L ++    I     V +   F+ +  +C+V   +        +Y+    N     P  + 
Sbjct: 239 LAKVHSRFI-----VSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIF 293
Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
                Q++  +  +H+  +I+ DLKPEN+LL     V++ D                   
Sbjct: 294 YT--AQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGL---------------- 335
Query: 257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA 316
             A++L    + T  +        T  + APE++LG  +++  D +++G  L E+ +   
Sbjct: 336 --AVELKAGQTKTKGY------AGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARG 387
Query: 317 LFQTH-ENLEHLAMMERVL 334
            F+   E +E+  + +RVL
Sbjct: 388 PFRARGEKVENKELKQRVL 406

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 12  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 71
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 72  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 127
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 128 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 180
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 181 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 209

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 44/259 (16%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR----EAAMIEIDV 141
           +GE+    +R+L   G G FG+V  C      +L A K +      +    + AM+E  +
Sbjct: 182 MGEDWFLDFRVL---GRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKI 238
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS-----LYDFLRKNSYRSFPIDLV 196
           L ++    I     V +   F+ +  +C+V   +        +Y+    N     P  + 
Sbjct: 239 LAKVHSRFI-----VSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIF 293
Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
                Q++  +  +H+  +I+ DLKPEN+LL     V++ D                   
Sbjct: 294 YT--AQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGL---------------- 335
Query: 257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA 316
             A++L    + T  +        T  + APE++LG  +++  D +++G  L E+ +   
Sbjct: 336 --AVELKAGQTKTKGY------AGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARG 387
Query: 317 LFQTH-ENLEHLAMMERVL 334
            F+   E +E+  + +RVL
Sbjct: 388 PFRARGEKVENKELKQRVL 406

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 100/234 (42%), Gaps = 49/234 (20%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV---RSINKYREAAMIEIDVLQRLARHDI 150
           + ++  +GEG +G+V    +   +E VA+KIV   R+++   E    EI + + L   ++
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEIXINKMLNHENV 67
Query: 151 ----GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
               G  R   I+  F        +F+++ P +            P    +    QL+  
Sbjct: 68  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI----------GMPEPDAQRFFHQLMAG 117
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V ++H + + H D+KPEN+LL   + +K+ D+                            
Sbjct: 118 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGL-------------------------- 151
Query: 267 STTFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
           +T F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 152 ATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 205

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 13  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 72
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 73  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 128
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 129 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 181
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 182 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 210

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 11  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 70
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 71  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 126
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 127 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 179
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 180 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 208

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 109/259 (42%), Gaps = 44/259 (16%)
Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR----EAAMIEIDV 141
           +GE+    +R+L   G G FG+V  C      +L A K +      +    + AM+E  +
Sbjct: 182 MGEDWFLDFRVL---GRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKI 238
Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS-----LYDFLRKNSYRSFPIDLV 196
           L ++    I     V +   F+ +  +C+V   +        +Y+    N     P  + 
Sbjct: 239 LAKVHSRFI-----VSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIF 293
Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
                Q++  +  +H+  +I+ DLKPEN+LL     V++ D                   
Sbjct: 294 YT--AQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGL---------------- 335
Query: 257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA 316
             A++L    + T  +        T  + APE++LG  +++  D +++G  L E+ +   
Sbjct: 336 --AVELKAGQTKTKGY------AGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARG 387
Query: 317 LFQTH-ENLEHLAMMERVL 334
            F+   E +E+  + +RVL
Sbjct: 388 PFRARGEKVENKELKQRVL 406

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 13  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 72
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+K+  R   I L+ +   Q+ + + 
Sbjct: 73  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLL-QYTSQICKGME 128
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 129 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 181
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 182 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 210

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 37/238 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHD 149
           +  L  +G+G+FG+V+       +EL AIKI++      +   E  M+E  VL  L +  
Sbjct: 21  FNFLMVLGKGSFGKVMLADRKGTEELYAIKILKKDVVIQDDDVECTMVEKRVLALLDKPP 80
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
                  Q+ + F   + +  V E +  G  +Y   +   ++  P  +      ++   +
Sbjct: 81  F----LTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKE-PQAVF--YAAEISIGL 133
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            F+H+  +I+ DLK +N++L S  ++K+ D+        D                  G 
Sbjct: 134 FFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMD------------------GV 175
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
           TT E         T  Y APE+I    +    D W+ G +L E+ +G+  F   +  E
Sbjct: 176 TTRE------FCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDE 227

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 100/234 (42%), Gaps = 49/234 (20%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV---RSINKYREAAMIEIDVLQRLARHDI 150
           + ++  +GEG +G+V    +   +E VA+KIV   R+++   E    EI + + L   ++
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEIXINKMLNHENV 66
Query: 151 ----GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
               G  R   I+  F        +F+++ P +            P    +    QL+  
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI----------GMPEPDAQRFFHQLMAG 116
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V ++H + + H D+KPEN+LL   + +K+ D+                            
Sbjct: 117 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGL-------------------------- 150
Query: 267 STTFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
           +T F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 151 ATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 100/234 (42%), Gaps = 49/234 (20%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV---RSINKYREAAMIEIDVLQRLARHDI 150
           + ++  +GEG +G+V    +   +E VA+KIV   R+++   E    EI + + L   ++
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEIXINKMLNHENV 66
Query: 151 ----GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
               G  R   I+  F        +F+++ P +            P    +    QL+  
Sbjct: 67  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI----------GMPEPDAQRFFHQLMAG 116
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V ++H + + H D+KPEN+LL   + +K+ D+                            
Sbjct: 117 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGL-------------------------- 150
Query: 267 STTFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
           +T F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 151 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 30/220 (13%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ K+G G FG+V   + N   + VA+K ++      +A + E ++++ L +HD    +
Sbjct: 15  KLVKKLGAGQFGEVWMGYYNNSTK-VAVKTLKPGTMSVQAFLEEANLMKTL-QHD----K 68
Query: 155 CVQIRNWFDYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V++         I I+ E +   SL DFL+ +      +  + +   Q+ E +A++   
Sbjct: 69  LVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK 128
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             IH DL+  N+L+  +   K+ D+  L+R  +D  Y         IK            
Sbjct: 129 NYIHRDLRAANVLVSESLMCKIADFG-LARVIEDNEYTAREGAKFPIK------------ 175
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + APE I    +    ++WS G +L E+ +
Sbjct: 176 ----------WTAPEAINFGCFTIKSNVWSFGILLYEIVT 205

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 31  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 82
Query: 159 RNWFDYRN--HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y     + IV +   G SLY  L  +  + F +  + ++ RQ    + ++H   +
Sbjct: 83  LLFMGYSTAPQLAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAKSI 141
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 142 IHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS-----------------GSHQFEQLSG 184
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 185 SIL-----WMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEM 237

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 65
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 66  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 119
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 153
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 154 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 205

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 65
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 66  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 119
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 153
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 154 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 205

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 65  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 118
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 152
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 153 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 65
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 66  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 119
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 153
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 154 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 205

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 50/234 (21%)
Query: 100 MGEGTFGQVVEC--FDNEKKELV---AIKIVRSINKY--REAAMIEIDVLQRLARHDIGG 152
           +G G FG+VVE   F   K++ V   A+K+++S      +EA M E+ ++  L +H+   
Sbjct: 46  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHE--- 102
Query: 153 TRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGR---------- 201
              V +     +   + ++ E      L +FLR    R    DL +E GR          
Sbjct: 103 -NIVNLLGACTHGGPVLVITEYCCYGDLLNFLR----RKAEADLDKEDGRPLELRDLLHF 157
Query: 202 --QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+ + +AF+     IH D+   N+LL +    K+ D+        D +Y         
Sbjct: 158 SSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLP 217
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
           +K                      + APE I    +    D+WS G +L E+ S
Sbjct: 218 VK----------------------WMAPESIFDCVYTVQSDVWSYGILLWEIFS 249

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 50/234 (21%)
Query: 100 MGEGTFGQVVEC--FDNEKKELV---AIKIVRSINKY--REAAMIEIDVLQRLARHDIGG 152
           +G G FG+VVE   F   K++ V   A+K+++S      +EA M E+ ++  L +H+   
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHE--- 110
Query: 153 TRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGR---------- 201
              V +     +   + ++ E      L +FLR    R    DL +E GR          
Sbjct: 111 -NIVNLLGACTHGGPVLVITEYCCYGDLLNFLR----RKAEADLDKEDGRPLELRDLLHF 165
Query: 202 --QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+ + +AF+     IH D+   N+LL +    K+ D+        D +Y         
Sbjct: 166 SSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLP 225
Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
           +K                      + APE I    +    D+WS G +L E+ S
Sbjct: 226 VK----------------------WMAPESIFDCVYTVQSDVWSYGILLWEIFS 257

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 65
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 66  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 119
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 153
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 154 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 205

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 47/239 (19%)
Query: 100 MGEGTFGQVVEC--FDNEKKELV---AIKIVRSINKY--REAAMIEIDVLQRLARHD--- 149
           +G G FG+VVE   F   K++ V   A+K+++S      +EA M E+ ++  L +H+   
Sbjct: 39  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 98
Query: 150 ------IGGTRCVQIRNWFDYRNHICIVFEK----LGPSLY-----DFLRKNSYRSFPID 194
                   G   + I  +  Y + +  +  K    LGPSL      + L K   R   + 
Sbjct: 99  NLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLAPGQDPEGLDKEDGRPLELR 158
Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
            +     Q+ + +AF+     IH D+   N+LL +    K+ D+        D +Y    
Sbjct: 159 DLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKG 218
Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                +K                      + APE I    +    D+WS G +L E+ S
Sbjct: 219 NARLPVK----------------------WMAPESIFDCVYTVQSDVWSYGILLWEIFS 255

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 31  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 82
Query: 159 RNWFDYRN--HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y     + IV +   G SLY  L  +  + F +  + ++ RQ    + ++H   +
Sbjct: 83  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAKSI 141
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 142 IHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS-----------------GSHQFEQLSG 184
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 185 SIL-----WMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEM 237

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIG 151
           +  +S++G G  G V +        ++A K++    K   R   + E+ VL     H+  
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL-----HECN 62
Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               V     F     I I  E +     D + K + R  P  ++ ++   +++ + ++ 
Sbjct: 63  SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSIAVIKGLTYLR 121
Query: 212 EL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           E  +++H D+KP NIL+ S   +K+ D+                    + +LID  + +F
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGV------------------SGQLIDSMANSF 163
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                   V TR Y +PE + G  ++   D+WS+G  LVE+  G
Sbjct: 164 --------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIG 151
           +  +S++G G  G V +        ++A K++    K   R   + E+ VL     H+  
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL-----HECN 62
Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               V     F     I I  E +     D + K + R  P  ++ ++   +++ + ++ 
Sbjct: 63  SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSIAVIKGLTYLR 121
Query: 212 EL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           E  +++H D+KP NIL+ S   +K+ D+                    + +LID  + +F
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGV------------------SGQLIDSMANSF 163
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                   V TR Y +PE + G  ++   D+WS+G  LVE+  G
Sbjct: 164 --------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIG 151
           +  +S++G G  G V +        ++A K++    K   R   + E+ VL     H+  
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL-----HECN 62
Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               V     F     I I  E +     D + K + R  P  ++ ++   +++ + ++ 
Sbjct: 63  SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSIAVIKGLTYLR 121
Query: 212 EL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           E  +++H D+KP NIL+ S   +K+ D+                    + +LID  + +F
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGV------------------SGQLIDSMANSF 163
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                   V TR Y +PE + G  ++   D+WS+G  LVE+  G
Sbjct: 164 --------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 65  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 118
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 152
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 153 VFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3) Length = 350

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 46/225 (20%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG+V    D +     A+K VR +  +R        V + +A   +   R V +
Sbjct: 79  RLGRGSFGEVHRMKDKQTGFQCAVKKVR-LEVFR--------VEELVACAGLSSPRIVPL 129
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
                    + I  E L G SL   +++      P D       Q LE + ++H  R++H
Sbjct: 130 YGAVREGPWVNIFMELLEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRRILH 187
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-- 275
            D+K +N+LL                 S DGS            L DFG       D   
Sbjct: 188 GDVKADNVLL-----------------SSDGSR---------AALCDFGHALCLQPDGLG 221
Query: 276 ------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  Y+  T  + APEV++G   +   D+WS  C+++ + +G
Sbjct: 222 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNG 266

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 65  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 118
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 152
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 153 VFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 7   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 63
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 64  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 117
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 118 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 151
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 152 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 203

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 65
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 66  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 119
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 153
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 154 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 205

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 65  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 118
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 152
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 153 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIG 151
           +  +S++G G  G V +        ++A K++    K   R   + E+ VL     H+  
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL-----HECN 62
Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               V     F     I I  E +     D + K + R  P  ++ ++   +++ + ++ 
Sbjct: 63  SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSIAVIKGLTYLR 121
Query: 212 EL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           E  +++H D+KP NIL+ S   +K+ D+                    + +LID  + +F
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGV------------------SGQLIDSMANSF 163
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                   V TR Y +PE + G  ++   D+WS+G  LVE+  G
Sbjct: 164 --------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YREAAMIEIDVLQRLARHDIG 151
           +  +S++G G  G V +        ++A K++    K   R   + E+ VL     H+  
Sbjct: 8   FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL-----HECN 62
Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
               V     F     I I  E +     D + K + R  P  ++ ++   +++ + ++ 
Sbjct: 63  SPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR-IPEQILGKVSIAVIKGLTYLR 121
Query: 212 EL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           E  +++H D+KP NIL+ S   +K+ D+                    + +LID  + +F
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGV------------------SGQLIDSMANSF 163
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                   V TR Y +PE + G  ++   D+WS+G  LVE+  G
Sbjct: 164 --------VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199

>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase (nik) Length = 352

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 46/225 (20%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG+V    D +     A+K VR +  +R        V + +A   +   R V +
Sbjct: 81  RVGRGSFGEVHRMKDKQTGFQCAVKKVR-LEVFR--------VEELVACAGLSSPRIVPL 131
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
                    + I  E L G SL   +++      P D       Q LE + ++H  R++H
Sbjct: 132 YGAVREGPWVNIFMELLEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRRILH 189
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-- 275
            D+K +N+LL                 S DGS            L DFG       D   
Sbjct: 190 GDVKADNVLL-----------------SSDGSR---------AALCDFGHALCLQPDGLG 223
Query: 276 ------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  Y+  T  + APEV++G   +   D+WS  C+++ + +G
Sbjct: 224 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNG 268

>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) Bound To A 2-(aminothiazoly)phenol (cmp2) Length = 336

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 46/225 (20%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG+V    D +     A+K VR +  +R        V + +A   +   R V +
Sbjct: 65  RVGRGSFGEVHRMKDKQTGFQCAVKKVR-LEVFR--------VEELVACAGLSSPRIVPL 115
Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
                    + I  E L G SL   +++      P D       Q LE + ++H  R++H
Sbjct: 116 YGAVREGPWVNIFMELLEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRRILH 173
Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-- 275
            D+K +N+LL                 S DGS            L DFG       D   
Sbjct: 174 GDVKADNVLL-----------------SSDGSR---------AALCDFGHALCLQPDGLG 207
Query: 276 ------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                  Y+  T  + APEV++G   +   D+WS  C+++ + +G
Sbjct: 208 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNG 252

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 65  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 118
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 152
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 153 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For Catalysis And Regulation Of Non-conventional Splicing Length = 434

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 141/360 (39%), Gaps = 77/360 (21%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR 147
           +NL    +IL   G G+ G VV     + +  VA+K  R +  + + A++EI +L     
Sbjct: 14  KNLVVSEKIL---GYGSSGTVVFQGSFQGRP-VAVK--RMLIDFCDIALMEIKLLTESDD 67
Query: 148 H-DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE-----LGR 201
           H ++    C +  + F Y     I  E    +L D +   +     + L +E     L R
Sbjct: 68  HPNVIRYYCSETTDRFLY-----IALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLR 122
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI- 260
           Q+   VA +H L++IH DLKP+NIL+ ++        +F +         + L     + 
Sbjct: 123 QIASGVAHLHSLKIIHRDLKPQNILVSTSS-------RFTADQQTGAENLRILISDFGLC 175
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG-------WNYPCDLWSVGCILVELCS 313
           K +D G ++F   + +    T  +RAPE++                D++S+GC+   + S
Sbjct: 176 KKLDSGQSSF-RTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILS 234
Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
                                G  P           +KY R    +    G  S D M+ 
Sbjct: 235 K--------------------GKHPF---------GDKYSRESNII---RGIFSLDEMKC 262
Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
           +            H      +  DL+  ++ +DP +R  A + LRHP F    ++  F L
Sbjct: 263 L------------HDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWPKSKKLEFLL 310

>pdb|2CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Cki7 Length = 297

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           Y++  ++GEG+FG + E  +    + VAIK      + R +   ++    R  +   G  
Sbjct: 11  YKVGRRIGEGSFGVIFEGTNLLNNQQVAIKF-----EPRRSDAPQLRDEYRTYKLLAG-- 63
Query: 154 RCVQIRNWFDYRN---HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
            C  I N + +     H  +V + LGPSL D L     R F +  V    +Q+L  V  +
Sbjct: 64  -CTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSI 121
Query: 211 HELRLIHTDLKPENILL 227
           HE  L++ D+KP+N L+
Sbjct: 122 HEKSLVYRDIKPDNFLI 138

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 65  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 118
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 152
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 153 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 65  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 118
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 152
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 153 VFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 16  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 75
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL D+L+ ++ R   I L+ +   Q+ + + 
Sbjct: 76  IVKYKGV---CYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLL-QYTSQICKGME 131
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 132 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 184
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 185 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 213

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 65  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 118
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 152
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 153 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 65
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 66  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 119
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 153
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 154 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 205

>pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An Atp Competitive Inhibitor, Ic261 Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           Y++  ++GEG+FG + E  +    + VAIK      + R +   ++    R  +   G  
Sbjct: 12  YKVGRRIGEGSFGVIFEGTNLLNNQQVAIKF-----EPRRSDAPQLRDEYRTYKLLAG-- 64
Query: 154 RCVQIRNWFDYRN---HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
            C  I N + +     H  +V + LGPSL D L     R F +  V    +Q+L  V  +
Sbjct: 65  -CTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSI 122
Query: 211 HELRLIHTDLKPENILL 227
           HE  L++ D+KP+N L+
Sbjct: 123 HEKSLVYRDIKPDNFLI 139

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 43  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 94
Query: 159 RNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y  +  + IV +   G SLY  L     +   I L+ ++ RQ  + + ++H   +
Sbjct: 95  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI-DIARQTAQGMDYLHAKSI 153
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 154 IHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWS-----------------GSHQFEQLSG 196
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 197 SIL-----WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 249

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 108/252 (42%), Gaps = 43/252 (17%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVR-----SINKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V   F     + VA+K  R      I++  E    E  +   L   +I   R
Sbjct: 15  IGIGGFGKVYRAF--WIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALR 72
Query: 155 CVQIRNWFDYRNHICIV--FEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            V ++       ++C+V  F + GP      R  S +  P D++     Q+   + ++H+
Sbjct: 73  GVCLK-----EPNLCLVMEFARGGP----LNRVLSGKRIPPDILVNWAVQIARGMNYLHD 123
Query: 213 ---LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
              + +IH DLK  NIL++              +  ++G     +     +K+ DFG   
Sbjct: 124 EAIVPIIHRDLKSSNILIL--------------QKVENGDLSNKI-----LKITDFGLAR 164
Query: 270 FEHQDHSYVVSTRH-YRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL--EH 326
             H+      +  + + APEVI    ++   D+WS G +L EL +GE  F+  + L   +
Sbjct: 165 EWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAY 224
Query: 327 LAMMERVLGPLP 338
              M ++  P+P
Sbjct: 225 GVAMNKLALPIP 236

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 19  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 70
Query: 159 RNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y  +  + IV +   G SLY  L  +  + F +  + ++ RQ    + ++H   +
Sbjct: 71  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHASETK-FEMKKLIDIARQTARGMDYLHAKSI 129
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 130 IHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWS-----------------GSHQFEQLSG 172
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 173 SIL-----WMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEM 225

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG +G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 8   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 65  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 118
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 152
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 153 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The Kinase-Ribonuclease Domain Of Ire1 Length = 448

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 139/356 (39%), Gaps = 73/356 (20%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR 147
           +NL    +IL   G G+ G VV     + +  VA+K  R +  + + A++EI +L     
Sbjct: 32  KNLVVSEKIL---GYGSSGTVVFQGSFQGRP-VAVK--RMLIDFCDIALMEIKLLTESDD 85
Query: 148 H-DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE-----LGR 201
           H ++    C +  + F Y     I  E    +L D +   +     + L +E     L R
Sbjct: 86  HPNVIRYYCSETTDRFLY-----IALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLR 140
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI- 260
           Q+   VA +H L++IH DLKP+NIL+ ++        +F +         + L     + 
Sbjct: 141 QIASGVAHLHSLKIIHRDLKPQNILVSTSS-------RFTADQQTGAENLRILISDFGLC 193
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVI---LGLGWNYPCDLWSVGCILVELCSGEAL 317
           K +D G   F   + +    T  +RAPE++            D++S+GC+   + S    
Sbjct: 194 KKLDSGQXXF-RXNLNNPSGTSGWRAPELLEESTKRRLTRSIDIFSMGCVFYYILSK--- 249
Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
                            G  P           +KY R    +    G  S D M+ +   
Sbjct: 250 -----------------GKHPF---------GDKYSRESNII---RGIFSLDEMKCL--- 277
Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                    H      +  DL+  ++ +DP +R  A + LRHP F    ++  F L
Sbjct: 278 ---------HDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWPKSKKLEFLL 324

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 35  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 86
Query: 159 RNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y  +  + IV +   G SLY  L     +   I L+ ++ RQ  + + ++H   +
Sbjct: 87  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI-DIARQTAQGMDYLHAKSI 145
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 146 IHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWS-----------------GSHQFEQLSG 188
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 189 SIL-----WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 241

>pdb|2V62|A Chain A, Structure Of Vaccinia-Related Kinase 2 Length = 345

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 30/192 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G FG +   F   K E  A  +V+   +       E+   QR+A+ D     C++ 
Sbjct: 44  KIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKD-----CIKK 98
Query: 159 ---RNWFDY----------------RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
              R   DY                R++  +V E+LG  L     +N   +F    V +L
Sbjct: 99  WIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNG--TFKKSTVLQL 156
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILL--VSAEYVKVPDYKFLSRSSKDGSY--FKNLP 255
           G ++L+ + ++HE   +H D+K  N+LL   + + V + DY    R   +G++  ++  P
Sbjct: 157 GIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENP 216
Query: 256 KSSAIKLIDFGS 267
           +      I+F S
Sbjct: 217 RKGHNGTIEFTS 228

>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric KinaseRNASE Ire1 Length = 448

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 139/356 (39%), Gaps = 73/356 (20%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR 147
           +NL    +IL   G G+ G VV     + +  VA+K  R +  + + A++EI +L     
Sbjct: 32  KNLVVSEKIL---GYGSSGTVVFQGSFQGRP-VAVK--RMLIDFCDIALMEIKLLTESDD 85
Query: 148 H-DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE-----LGR 201
           H ++    C +  + F Y     I  E    +L D +   +     + L +E     L R
Sbjct: 86  HPNVIRYYCSETTDRFLY-----IALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLR 140
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI- 260
           Q+   VA +H L++IH DLKP+NIL+ ++        +F +         + L     + 
Sbjct: 141 QIASGVAHLHSLKIIHRDLKPQNILVSTSS-------RFTADQQTGAENLRILISDFGLC 193
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVI---LGLGWNYPCDLWSVGCILVELCSGEAL 317
           K +D G   F   + +    T  +RAPE++            D++S+GC+   + S    
Sbjct: 194 KKLDSGQXXF-RXNLNNPSGTSGWRAPELLEESTKRRLTRSIDIFSMGCVFYYILSK--- 249
Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
                            G  P           +KY R    +    G  S D M+ +   
Sbjct: 250 -----------------GKHPF---------GDKYSRESNII---RGIFSLDEMKCL--- 277
Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                    H      +  DL+  ++ +DP +R  A + LRHP F    ++  F L
Sbjct: 278 ---------HDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWPKSKKLEFLL 324

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/345 (21%), Positives = 133/345 (38%), Gaps = 90/345 (26%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA----MIEIDVLQRLARHD 149
           + I   +G+G FG V    + +   +VA+K++      +E        EI++   L   +
Sbjct: 25  FEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHHPN 84
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           I     +++ N+F  R  I ++ E   P   LY  L+K+   +F       +  +L +++
Sbjct: 85  I-----LRLYNYFYDRRRIYLILE-YAPRGELYKELQKSC--TFDEQRTATIMEELADAL 136
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            + H  ++IH D+KPEN+LL     +K+ D+ +         +  +L + +    +D   
Sbjct: 137 MYCHGKKVIHRDIKPENLLLGLKGELKIADFGW-------SVHAPSLRRKTMCGTLD--- 186
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                           Y  PE+I G   N   DLW +G +  EL  G   F++  + E  
Sbjct: 187 ----------------YLPPEMIEGRMHNEKVDLWCIGVLCYELLVGNPPFESASHNE-- 228
Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
                                    +RR  ++D                 L+ P  +   
Sbjct: 229 ------------------------TYRRIVKVD-----------------LKFPASVPTG 247
Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
                    DL+  LLR++P+ERL   +   HP+   + RR   P
Sbjct: 248 AQ-------DLISKLLRHNPSERLPLAQVSAHPWVRANSRRVLPP 285

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 24/99 (24%)
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           ++H DLKP N+ L   + VK+ D+      + D S+ K                      
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTF-------------------- 176
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               V T +Y +PE +  + +N   D+WS+GC+L ELC+
Sbjct: 177 ----VGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCA 211

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 42/271 (15%)
Query: 100 MGEGTFGQV-VECFD---NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLA-RHDIGG 152
           +GEG FG+V + C+D   +   E+VA+K ++     + R     EI++L+ L   H +  
Sbjct: 16  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 75
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
             C + +   +    + + +  LG SL D+L ++      + L     +Q+ E +A++H 
Sbjct: 76  KGCCEDQG--EKSVQLVMEYVPLG-SLRDYLPRHCVGLAQLLL---FAQQICEGMAYLHA 129
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
              IH  L   N+LL +   VK+ D+  L+++  +G  +  + +       D  S  F  
Sbjct: 130 QHYIHRALAARNVLLDNDRLVKIGDFG-LAKAVPEGHEYYRVRE-------DGDSPVF-- 179
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER 332
                      + APE +    + Y  D+WS G  L EL     L     N         
Sbjct: 180 -----------WYAPECLKECKFYYASDVWSFGVTLYEL-----LTYCDSNQSPHTKFTE 223
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPD 363
           ++G     M +    R  +   RG RL  PD
Sbjct: 224 LIGHTQGQMTV---LRLTELLERGERLPRPD 251

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 42/271 (15%)
Query: 100 MGEGTFGQV-VECFD---NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLA-RHDIGG 152
           +GEG FG+V + C+D   +   E+VA+K ++     + R     EI++L+ L   H +  
Sbjct: 17  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKY 76
Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
             C + +   +    + + +  LG SL D+L ++      + L     +Q+ E +A++H 
Sbjct: 77  KGCCEDQG--EKSVQLVMEYVPLG-SLRDYLPRHCVGLAQLLL---FAQQICEGMAYLHA 130
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
              IH  L   N+LL +   VK+ D+  L+++  +G  +  + +       D  S  F  
Sbjct: 131 QHYIHRALAARNVLLDNDRLVKIGDFG-LAKAVPEGHEYYRVRE-------DGDSPVF-- 180
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER 332
                      + APE +    + Y  D+WS G  L EL     L     N         
Sbjct: 181 -----------WYAPECLKECKFYYASDVWSFGVTLYEL-----LTYCDSNQSPHTKFTE 224
Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPD 363
           ++G     M +    R  +   RG RL  PD
Sbjct: 225 LIGHTQGQMTV---LRLTELLERGERLPRPD 252

>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2 Length = 313

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 40/242 (16%)
Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH 148
           ++ P +R+  K+G G FG++    +    E VAIK+   I        +E    ++L+  
Sbjct: 1   SMGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKL-EPIKSRAPQLHLEYRFYKQLS-- 57
Query: 149 DIGGTRCV-QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
               T  V Q+  +     +  +V E LGPSL D       R+F +  V  +  QL+  +
Sbjct: 58  ---ATEGVPQVYYFGPXGKYNAMVLELLGPSLEDLFDLCD-RTFTLKTVLMIAIQLITRM 113
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            ++H   LI+ D+KPEN L      V  P  K                +  AI +IDFG 
Sbjct: 114 EYVHTKSLIYRDVKPENFL------VGRPGTK----------------RQHAIHIIDFGL 151
Query: 267 ---------STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
                         +++H  +  T  Y +    LG   +   DL ++G + +    G   
Sbjct: 152 AKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLP 211
Query: 318 FQ 319
           +Q
Sbjct: 212 WQ 213

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 15  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 66
Query: 159 RNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y  +  + IV +   G SLY  L     +   I L+ ++ RQ  + + ++H   +
Sbjct: 67  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI-DIARQTAQGMDYLHAKSI 125
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 126 IHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWS-----------------GSHQFEQLSG 168
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 169 SIL-----WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 221

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 49/234 (20%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIV---RSINKYREAAMIEIDVLQRLARHDI 150
           + ++  +GEG +G+V    +   +E VA+KIV   R+++   E    EI +   L   ++
Sbjct: 9   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD-CPENIKKEICINAMLNHENV 67
Query: 151 ----GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
               G  R   I+  F        +F+++ P +            P    +    QL+  
Sbjct: 68  VKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI----------GMPEPDAQRFFHQLMAG 117
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V ++H + + H D+KPEN+LL   + +K+ D+                            
Sbjct: 118 VVYLHGIGITHRDIKPENLLLDERDNLKISDFGL-------------------------- 151
Query: 267 STTFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
           +T F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 152 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 205

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 43  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 94
Query: 159 RNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y  +  + IV +   G SLY  L     +   I L+ ++ RQ  + + ++H   +
Sbjct: 95  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI-DIARQTAQGMDYLHAKSI 153
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 154 IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS-----------------GSHQFEQLSG 196
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 197 SIL-----WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 249

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 95/239 (39%), Gaps = 39/239 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHD 149
           +  L  +G+G+FG+V+        EL A+KI++      +   E  M+E  VL    +  
Sbjct: 343 FNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPP 402
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRS-FPIDLVRELGRQLLES 206
                  Q+ + F   + +  V E +  G  +Y   +   ++    +    E+   L   
Sbjct: 403 F----LTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLF-- 456
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
             F+    +I+ DLK +N++L S  ++K+ D+     +  DG   K              
Sbjct: 457 --FLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKXF------------ 502
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                         T  Y APE+I    +    D W+ G +L E+ +G+A F+  +  E
Sbjct: 503 ------------CGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE 549

>pdb|2IZR|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With Inhibitor Length = 330

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 28/233 (12%)
Query: 92  PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG 151
           P +R+  K+G G FG++    +    E VAIK+     +  ++   ++ +  R  +    
Sbjct: 9   PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKL-----EPMKSRAPQLHLEYRFYKQLGS 63
Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
           G    Q+  +     +  +V E LGPSL D       R+F +  V  +  QL+  + ++H
Sbjct: 64  GDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVH 122
Query: 212 ELRLIHTDLKPENILL-----VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
              LI+ D+KPEN L+      + + + + D+  L++   D    K++P           
Sbjct: 123 SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFA-LAKEYIDPETKKHIP----------- 170
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                +++H  +  T  Y +    LG   +   DL ++G + +    G   +Q
Sbjct: 171 -----YREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQ 218

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 42  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 93
Query: 159 RNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y  +  + IV +   G SLY  L     +   I L+ ++ RQ  + + ++H   +
Sbjct: 94  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI-DIARQTAQGMDYLHAKSI 152
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 153 IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS-----------------GSHQFEQLSG 195
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 196 SIL-----WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 248

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 48/238 (20%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMI--EIDVLQRLARHD 149
           Y ++  +G G FG+V        +++ A+K++      K  ++A    E D++       
Sbjct: 76  YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAF----- 130
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 VQ+   F    ++ +V E + G  L + +   S    P    R    +++ ++ 
Sbjct: 131 ANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLM---SNYDVPEKWARFYTAEVVLALD 187
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +H +  IH D+KP+N+LL                            KS  +KL DFG+ 
Sbjct: 188 AIHSMGFIHRDVKPDNMLL---------------------------DKSGHLKLADFGTC 220
Query: 269 TFEHQDH----SYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEALF 318
              +++        V T  Y +PEV+   G    +   CD WSVG  L E+  G+  F
Sbjct: 221 MKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPF 278

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 24/99 (24%)
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           ++H DLKP N+ L   + VK+ D+      + D S+ K                      
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAF-------------------- 176
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               V T +Y +PE +  + +N   D+WS+GC+L ELC+
Sbjct: 177 ----VGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCA 211

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 48/238 (20%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMI--EIDVLQRLARHD 149
           Y ++  +G G FG+V        +++ A+K++      K  ++A    E D++       
Sbjct: 71  YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAF----- 125
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 VQ+   F    ++ +V E + G  L + +   S    P    R    +++ ++ 
Sbjct: 126 ANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLM---SNYDVPEKWARFYTAEVVLALD 182
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +H +  IH D+KP+N+LL                            KS  +KL DFG+ 
Sbjct: 183 AIHSMGFIHRDVKPDNMLL---------------------------DKSGHLKLADFGTC 215
Query: 269 TFEHQDH----SYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEALF 318
              +++        V T  Y +PEV+   G    +   CD WSVG  L E+  G+  F
Sbjct: 216 MKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPF 273

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 35/246 (14%)
Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRC 155
            L ++G G FG VV+      +  VAIK+++  +   +  + E  V+  L+       + 
Sbjct: 28  FLKELGTGQFG-VVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHE-----KL 81
Query: 156 VQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           VQ+      +  I I+ E +    L ++LR+  +R F    + E+ + + E++ ++   +
Sbjct: 82  VQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQ 140
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
            +H DL   N L+     VKV D+  LSR   D  Y  ++     ++             
Sbjct: 141 FLHRDLAARNCLVNDQGVVKVSDFG-LSRYVLDDEYTSSVGSKFPVR------------- 186
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL----FQTHENLEHLAMM 330
                    +  PEV++   ++   D+W+ G ++ E+ S   +    F   E  EH+A  
Sbjct: 187 ---------WSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG 237
Query: 331 ERVLGP 336
            R+  P
Sbjct: 238 LRLYRP 243

>pdb|2CHL|A Chain A, Structure Of Casein Kinase 1 Gamma 3 Length = 351

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 28/233 (12%)
Query: 92  PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG 151
           P +R+  K+G G FG++    +    E VAIK+     +  ++   ++ +  R  +    
Sbjct: 30  PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKL-----EPMKSRAPQLHLEYRFYKQLGS 84
Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
           G    Q+  +     +  +V E LGPSL D       R+F +  V  +  QL+  + ++H
Sbjct: 85  GDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVH 143
Query: 212 ELRLIHTDLKPENILL-----VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
              LI+ D+KPEN L+      + + + + D+  L++   D    K++P           
Sbjct: 144 SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFA-LAKEYIDPETKKHIP----------- 191
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                +++H  +  T  Y +    LG   +   DL ++G + +    G   +Q
Sbjct: 192 -----YREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQ 239

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 95/239 (39%), Gaps = 39/239 (16%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHD 149
           +  L  +G+G+FG+V+        EL A+KI++      +   E  M+E  VL    +  
Sbjct: 22  FNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPP 81
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRS-FPIDLVRELGRQLLES 206
                  Q+ + F   + +  V E +  G  +Y   +   ++    +    E+   L   
Sbjct: 82  F----LTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLF-- 135
Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
             F+    +I+ DLK +N++L S  ++K+ D+     +  DG   K              
Sbjct: 136 --FLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKXF------------ 181
Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                         T  Y APE+I    +    D W+ G +L E+ +G+A F+  +  E
Sbjct: 182 ------------CGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE 228

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 33/224 (14%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L   +
Sbjct: 16  KFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN 75
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I   + V    +   R ++ ++ E L   SL ++L+K+  R   I L+ +   Q+ + + 
Sbjct: 76  IVKYKGV---CYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLL-QYTSQICKGME 131
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK-NLPKSSAIKLIDFGS 267
           ++   R IH DL   NIL+ +   VK+ D+       +D    K   P  S I       
Sbjct: 132 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPI------- 184
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                           + APE +    ++   D+WS G +L EL
Sbjct: 185 ---------------FWYAPESLTESKFSVASDVWSFGVVLYEL 213

>pdb|4HGL|A Chain A, Crystal Structure Of Ck1g3 With Compound 1 Length = 330

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 104/245 (42%), Gaps = 32/245 (13%)
Query: 80  GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEI 139
           G  V  +G    P +R+  K+G G FG++    +    E VAIK+     +  ++   ++
Sbjct: 1   GSGVLMVG----PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKL-----EPMKSRAPQL 51
Query: 140 DVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREL 199
            +  R  +    G    Q+  +     +  +V E LGPSL D       R+F +  V  +
Sbjct: 52  HLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCD-RTFSLKTVLMI 110
Query: 200 GRQLLESVAFMHELRLIHTDLKPENILL-----VSAEYVKVPDYKFLSRSSKDGSYFKNL 254
             QL+  + ++H   LI+ D+KPEN L+      + + + + D+  L++   D    K++
Sbjct: 111 AIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFG-LAKEYIDPETKKHI 169
Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           P                +++H  +  T  Y +    LG   +   DL ++G + +    G
Sbjct: 170 P----------------YREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRG 213
Query: 315 EALFQ 319
              +Q
Sbjct: 214 SLPWQ 218

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 45/232 (19%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDV-LQRLARHDIGG 152
           + ++  +GEG  G+V    +   +E VA+KIV           I+ ++ + ++  H+   
Sbjct: 8   WDLVQTLGEGAAGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHE--- 64
Query: 153 TRCVQIRNWFDYRNHICIVFEKL----GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                +  ++ +R    I +  L    G  L+D +  +     P    +    QL+  V 
Sbjct: 65  ----NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVV 118
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H + + H D+KPEN+LL   + +K+ D+                            +T
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGL--------------------------AT 152
Query: 269 TFEHQDHSYVVS----TRHYRAPEVILGLGWNY-PCDLWSVGCILVELCSGE 315
            F + +   +++    T  Y APE++    ++  P D+WS G +L  + +GE
Sbjct: 153 VFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 38/248 (15%)
Query: 95  RILSKMGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHD 149
           +I   +G G FG+V         +++  VAIK ++S    K R   + E  ++ +    +
Sbjct: 36  KIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPN 95
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           +     + +         + I+ E +   SL  FLR+N  +   I LV  L R +   + 
Sbjct: 96  V-----IHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGML-RGIAAGMK 149
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++ ++  +H DL   NIL+ S    KV D+   +FL   + D +Y   L     I+    
Sbjct: 150 YLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIR---- 205
Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL 324
                             + APE I    +    D+WS G ++ E+ S GE  +    N 
Sbjct: 206 ------------------WTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ 247
Query: 325 EHLAMMER 332
           + +  +E+
Sbjct: 248 DVINAIEQ 255

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 96/238 (40%), Gaps = 48/238 (20%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMI--EIDVLQRLARHD 149
           Y ++  +G G FG+V        +++ A+K++      K  ++A    E D++       
Sbjct: 76  YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAF----- 130
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 VQ+   F    ++ +V E + G  L + +   S    P    R    +++ ++ 
Sbjct: 131 ANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLM---SNYDVPEKWARFYTAEVVLALD 187
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +H +  IH D+KP+N+LL                            KS  +KL DFG+ 
Sbjct: 188 AIHSMGFIHRDVKPDNMLL---------------------------DKSGHLKLADFGTC 220
Query: 269 TFEHQDH----SYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEALF 318
              +++        V T  Y +PEV+   G    +   CD WSVG  L E+  G+  F
Sbjct: 221 MKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPF 278

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 20  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 71
Query: 159 RNWFDYRN--HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y     + IV +   G SLY  L     +   I L+ ++ RQ  + + ++H   +
Sbjct: 72  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI-DIARQTAQGMDYLHAKSI 130
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 131 IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS-----------------GSHQFEQLSG 173
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 174 SIL-----WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 226

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 35/246 (14%)
Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRC 155
            L ++G G FG VV+      +  VAIK+++  +   +  + E  V+  L+       + 
Sbjct: 19  FLKELGTGQFG-VVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHE-----KL 72
Query: 156 VQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           VQ+      +  I I+ E +    L ++LR+  +R F    + E+ + + E++ ++   +
Sbjct: 73  VQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQ 131
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
            +H DL   N L+     VKV D+  LSR   D  Y  ++     ++             
Sbjct: 132 FLHRDLAARNCLVNDQGVVKVSDFG-LSRYVLDDEYTSSVGSKFPVR------------- 177
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL----FQTHENLEHLAMM 330
                    +  PEV++   ++   D+W+ G ++ E+ S   +    F   E  EH+A  
Sbjct: 178 ---------WSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG 228
Query: 331 ERVLGP 336
            R+  P
Sbjct: 229 LRLYRP 234

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 35/246 (14%)
Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRC 155
            L ++G G FG VV+      +  VAIK+++  +   +  + E  V+  L+       + 
Sbjct: 13  FLKELGTGQFG-VVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHE-----KL 66
Query: 156 VQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           VQ+      +  I I+ E +    L ++LR+  +R F    + E+ + + E++ ++   +
Sbjct: 67  VQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQ 125
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
            +H DL   N L+     VKV D+  LSR   D  Y  ++     ++             
Sbjct: 126 FLHRDLAARNCLVNDQGVVKVSDFG-LSRYVLDDEYTSSVGSKFPVR------------- 171
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL----FQTHENLEHLAMM 330
                    +  PEV++   ++   D+W+ G ++ E+ S   +    F   E  EH+A  
Sbjct: 172 ---------WSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG 222
Query: 331 ERVLGP 336
            R+  P
Sbjct: 223 LRLYRP 228

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 20  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 71
Query: 159 RNWFDYRN--HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y     + IV +   G SLY  L     +   I L+ ++ RQ  + + ++H   +
Sbjct: 72  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI-DIARQTAQGMDYLHAKSI 130
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 131 IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS-----------------GSHQFEQLSG 173
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 174 SIL-----WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 226

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 15  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 66
Query: 159 RNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y  +  + IV +   G SLY  L     +   I L+ ++ RQ  + + ++H   +
Sbjct: 67  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI-DIARQTAQGMDYLHAKSI 125
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 126 IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS-----------------GSHQFEQLSG 168
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 169 SIL-----WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 221

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 17  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 68
Query: 159 RNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y  +  + IV +   G SLY  L     +   I L+ ++ RQ  + + ++H   +
Sbjct: 69  LLFMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI-DIARQTAQGMDYLHAKSI 127
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 128 IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS-----------------GSHQFEQLSG 170
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 171 SIL-----WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 223

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 37/238 (15%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++G G+FG V +   +    +  + +     +  +A   E+ VL++        TR V I
Sbjct: 15  RIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--------TRHVNI 66
Query: 159 RNWFDYRN--HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
             +  Y     + IV +   G SLY  L     +   I L+ ++ RQ  + + ++H   +
Sbjct: 67  LLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLI-DIARQTAQGMDYLHAKSI 125
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLK  NI L     VK+ D+   +  S+                   GS  FE    
Sbjct: 126 IHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS-----------------GSHQFEQLSG 168
Query: 276 SYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
           S +     + APEVI     N   +  D+++ G +L EL +G+  +    N + +  M
Sbjct: 169 SIL-----WMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM 221

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 105/246 (42%), Gaps = 35/246 (14%)
Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRC 155
            L ++G G FG VV+      +  VAIK+++  +   +  + E  V+  L+       + 
Sbjct: 12  FLKELGTGQFG-VVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHE-----KL 65
Query: 156 VQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           VQ+      +  I I+ E +    L ++LR+  +R F    + E+ + + E++ ++   +
Sbjct: 66  VQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQ 124
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
            +H DL   N L+     VKV D+  LSR   D  Y  ++     ++             
Sbjct: 125 FLHRDLAARNCLVNDQGVVKVSDFG-LSRYVLDDEYTSSVGSKFPVR------------- 170
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL----FQTHENLEHLAMM 330
                    +  PEV++   ++   D+W+ G ++ E+ S   +    F   E  EH+A  
Sbjct: 171 ---------WSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG 221
Query: 331 ERVLGP 336
            R+  P
Sbjct: 222 LRLYRP 227

>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin Length = 434

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 139/360 (38%), Gaps = 77/360 (21%)
Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR 147
           +NL    +IL   G G+ G VV     + +  VA+K  R +  + + A++EI +L     
Sbjct: 14  KNLVVSEKIL---GYGSSGTVVFQGSFQGRP-VAVK--RMLIDFCDIALMEIKLLTESDD 67
Query: 148 H-DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE-----LGR 201
           H ++    C +  + F Y     I  E    +L D +   +     + L +E     L R
Sbjct: 68  HPNVIRYYCSETTDRFLY-----IALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLR 122
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI- 260
           Q+   VA +H L++IH DLKP+NIL+ ++        +F +         + L     + 
Sbjct: 123 QIASGVAHLHSLKIIHRDLKPQNILVSTSS-------RFTADQQTGAENLRILISDFGLC 175
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG-------WNYPCDLWSVGCILVELCS 313
           K +D G   F    ++    T  +RAPE++                D++S+GC+   + S
Sbjct: 176 KKLDSGQXXFRXNLNN-PSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILS 234
Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
                                G  P           +KY R    +    G  S D M+ 
Sbjct: 235 K--------------------GKHPF---------GDKYSRESNII---RGIFSLDEMKC 262
Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
           +            H      +  DL+  ++ +DP +R  A + LRHP F    ++  F L
Sbjct: 263 L------------HDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWPKSKKLEFLL 310

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 57/248 (22%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R ++   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 30  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 89
Query: 146 ARHDIGGTRCVQIRNWFDYRNH------ICIVFEKLGPSLYDFLRKN-----SYRSFPID 194
             H       + + N             + + F K G +L  +LR        Y+  P D
Sbjct: 90  GHH-------LNVVNLLGACTKPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKEAPED 141
Query: 195 LVREL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
           L ++            Q+ + + F+   + IH DL   NILL     VK+ D+       
Sbjct: 142 LYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIY 201
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
           KD  Y +       +K                      + APE I    +    D+WS G
Sbjct: 202 KDPDYVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFG 239
Query: 306 CILVELCS 313
            +L E+ S
Sbjct: 240 VLLWEIFS 247

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 35/245 (14%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           L ++G G FG VV+      +  VAIK+++  +   +  + E  V+  L+       + V
Sbjct: 9   LKELGTGQFG-VVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHE-----KLV 62
Query: 157 QIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           Q+      +  I I+ E +    L ++LR+  +R F    + E+ + + E++ ++   + 
Sbjct: 63  QLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQF 121
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           +H DL   N L+     VKV D+  LSR   D  Y  ++     ++              
Sbjct: 122 LHRDLAARNCLVNDQGVVKVSDFG-LSRYVLDDEYTSSVGSKFPVR-------------- 166
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL----FQTHENLEHLAMME 331
                   +  PEV++   ++   D+W+ G ++ E+ S   +    F   E  EH+A   
Sbjct: 167 --------WSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGL 218
Query: 332 RVLGP 336
           R+  P
Sbjct: 219 RLYRP 223

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 96/232 (41%), Gaps = 36/232 (15%)
Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHDI 150
           Y ++  +G G FG+V        +++ A+K++     I +   A   E   +   A    
Sbjct: 77  YDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFAN--- 133
Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                VQ+   F    ++ +V E +     D +   S    P    +    +++ ++  +
Sbjct: 134 -SPWVVQLFCAFQDDKYLYMVMEYMPGG--DLVNLMSNYDVPEKWAKFYTAEVVLALDAI 190
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H + LIH D+KP+N+LL    ++K+ D+                   + +K+ + G    
Sbjct: 191 HSMGLIHRDVKPDNMLLDKHGHLKLADF------------------GTCMKMDETGMV-- 230
Query: 271 EHQDHSYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEALF 318
            H D +  V T  Y +PEV+   G    +   CD WSVG  L E+  G+  F
Sbjct: 231 -HCDTA--VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPF 279

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 43/227 (18%)
Query: 98  SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEI---DVLQRLARHDIGGTR 154
           +KMGEG FG V + + N     VA+K        + AAM++I   ++ Q+  +      +
Sbjct: 37  NKMGEGGFGVVYKGYVNNTT--VAVK--------KLAAMVDITTEELKQQFDQEIKVMAK 86
Query: 155 C-----VQIRNWFDYRNHICIVFEKL-GPSLYDFLR-KNSYRSFPIDLVRELGRQLLESV 207
           C     V++  +    + +C+V+  +   SL D L   +        +  ++ +     +
Sbjct: 87  CQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGI 146
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            F+HE   IH D+K  NILL  A   K+ D+     S K                  F  
Sbjct: 147 NFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEK------------------FAQ 188
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           T       S +V T  Y APE + G       D++S G +L+E+ +G
Sbjct: 189 TVMX----SRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITG 230

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 32/231 (13%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           + ++G G FG +V       K+ VAIK +R      E  + E +V+ +L+       + V
Sbjct: 12  VQEIGSGQFG-LVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSH-----PKLV 65
Query: 157 QIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           Q+      +  IC+VFE +    L D+LR      F  + +  +   + E +A++ E  +
Sbjct: 66  QLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEASV 124
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DL   N L+   + +KV D+  ++R   D  Y  +      +K              
Sbjct: 125 IHRDLAARNCLVGENQVIKVSDFG-MTRFVLDDQYTSSTGTKFPVK-------------- 169
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE 325
                   + +PEV     ++   D+WS G ++ E+ S G+  ++   N E
Sbjct: 170 --------WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 212

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 48/235 (20%)
Query: 100 MGEGTFGQVVEC--FDNEKKELV---AIKIVRSINKY--REAAMIEIDVLQRLARHDIGG 152
           +G G FG+VVE   F   K++ V   A+K+++S      +EA M E+ ++  L +H+   
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHE--- 110
Query: 153 TRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYR-----SFPI--------DLVRE 198
              V +     +   + ++ E      L +FLR+ S       +F I        DL+  
Sbjct: 111 -NIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTLSTRDLLH- 168
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+ + +AF+     IH D+   N+LL +    K+ D+        D +Y        
Sbjct: 169 FSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARL 228
Query: 259 AIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
            +K                      + APE I    +    D+WS G +L E+ S
Sbjct: 229 PVK----------------------WMAPESIFDCVYTVQSDVWSYGILLWEIFS 261

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 48/235 (20%)
Query: 100 MGEGTFGQVVEC--FDNEKKELV---AIKIVRSINKY--REAAMIEIDVLQRLARHDIGG 152
           +G G FG+VVE   F   K++ V   A+K+++S      +EA M E+ ++  L +H+   
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHE--- 110
Query: 153 TRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYR-----SFPI--------DLVRE 198
              V +     +   + ++ E      L +FLR+ S       +F I        DL+  
Sbjct: 111 -NIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLH- 168
Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+ + +AF+     IH D+   N+LL +    K+ D+        D +Y        
Sbjct: 169 FSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARL 228
Query: 259 AIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
            +K                      + APE I    +    D+WS G +L E+ S
Sbjct: 229 PVK----------------------WMAPESIFDCVYTVQSDVWSYGILLWEIFS 261

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 46/241 (19%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + +S++G+G FG V  C      +    LVA+K ++ S    +     EI +L+ L    
Sbjct: 13  KYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDF 72
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPS--LYDFLRKNSYRSFPIDLVREL--GRQLLE 205
           I   R V   ++   R  + +V E L PS  L DFL+++  R   +D  R L    Q+ +
Sbjct: 73  IVKYRGV---SYGPGRQSLRLVMEYL-PSGCLRDFLQRHRAR---LDASRLLLYSSQICK 125
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF-KNLPKSSAIKLID 264
            + ++   R +H DL   NIL+ S  +VK+ D+        D  Y+    P  S I    
Sbjct: 126 GMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPI---- 181
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL-------CSGEAL 317
                              + APE +    ++   D+WS G +L EL       CS  A 
Sbjct: 182 ------------------FWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE 223
Query: 318 F 318
           F
Sbjct: 224 F 224

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 24/99 (24%)
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           ++H DLKP N+ L   + VK+ D+      + D  + K                      
Sbjct: 137 VLHRDLKPANVFLDGKQNVKLGDFGLARILNHDEDFAKEF-------------------- 176
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
               V T +Y +PE +  + +N   D+WS+GC+L ELC+
Sbjct: 177 ----VGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCA 211

>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With 2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9- Isopropylpurine (Casp Target) Length = 310

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 37/235 (15%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G G FG++    +    E VAIK+   I        +E    ++L      G  
Sbjct: 3   RVGKKIGCGNFGELRLGKNLYTNEYVAIKL-EPIKSRAPQLHLEYRFYKQLGS---AGEG 58
Query: 155 CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
             Q+  +     +  +V E LGPSL D       R+F +  V  +  QLL  + ++H   
Sbjct: 59  LPQVYYFGPXGKYNAMVLELLGPSLEDLFDLCD-RTFTLKTVLMIAIQLLSRMEYVHSKN 117
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-------- 266
           LI+ D+KPEN L+                  + G+      K   I +IDFG        
Sbjct: 118 LIYRDVKPENFLI-----------------GRQGN-----KKEHVIHIIDFGLAKEYIDP 155
Query: 267 --STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                  +++H  +  T  Y +    LG   +   DL ++G + +    G   +Q
Sbjct: 156 ETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQ 210

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 46/241 (19%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + +S++G+G FG V  C      +    LVA+K ++ S    +     EI +L+ L    
Sbjct: 14  KYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDF 73
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPS--LYDFLRKNSYRSFPIDLVREL--GRQLLE 205
           I   R V   ++   R  + +V E L PS  L DFL+++  R   +D  R L    Q+ +
Sbjct: 74  IVKYRGV---SYGPGRQSLRLVMEYL-PSGCLRDFLQRHRAR---LDASRLLLYSSQICK 126
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF-KNLPKSSAIKLID 264
            + ++   R +H DL   NIL+ S  +VK+ D+        D  Y+    P  S I    
Sbjct: 127 GMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPI---- 182
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL-------CSGEAL 317
                              + APE +    ++   D+WS G +L EL       CS  A 
Sbjct: 183 ------------------FWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE 224
Query: 318 F 318
           F
Sbjct: 225 F 225

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 57/248 (22%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R ++   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 65  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 124
Query: 146 ARHDIGGTRCVQIRNWFDYRNH------ICIVFEKLGPSLYDFLRKN-----SYRSFPID 194
             H       + + N             + + F K G +L  +LR        Y+  P D
Sbjct: 125 GHH-------LNVVNLLGACTKPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKVAPED 176
Query: 195 LVREL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
           L ++            Q+ + + F+   + IH DL   NILL     VK+ D+       
Sbjct: 177 LYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIY 236
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
           KD  Y +       +K                      + APE I    +    D+WS G
Sbjct: 237 KDPDYVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFG 274
Query: 306 CILVELCS 313
            +L E+ S
Sbjct: 275 VLLWEIFS 282

>pdb|4ALU|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 35/192 (18%)
Query: 137 IEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP--SLYDFLRKNSYRSFPID 194
           +E+ +L++++    G +  +++ +WF+  +   ++ E+  P   L+DF+ +    +   +
Sbjct: 103 MEVVLLKKVSS---GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEE 157
Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
           L R    Q+LE+V   H   ++H D+K ENIL+             L+R           
Sbjct: 158 LARSFFWQVLEAVRHCHNCGVLHRDIKDENILID------------LNRGE--------- 196
Query: 255 PKSSAIKLIDFGS-TTFEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELC 312
                +KLIDFGS    +   ++    TR Y  PE I    ++     +WS+G +L ++ 
Sbjct: 197 -----LKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMV 251
Query: 313 SGEALFQTHENL 324
            G+  F+  E +
Sbjct: 252 CGDIPFEHDEEI 263

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 57/248 (22%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R ++   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 28  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 87
Query: 146 ARHDIGGTRCVQIRNWFDYRNH------ICIVFEKLGPSLYDFLRKN-----SYRSFPID 194
             H       + + N             + + F K G +L  +LR        Y+  P D
Sbjct: 88  GHH-------LNVVNLLGACTKPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKVAPED 139
Query: 195 LVREL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
           L ++            Q+ + + F+   + IH DL   NILL     VK+ D+       
Sbjct: 140 LYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIY 199
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
           KD  Y +       +K                      + APE I    +    D+WS G
Sbjct: 200 KDPDYVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFG 237
Query: 306 CILVELCS 313
            +L E+ S
Sbjct: 238 VLLWEIFS 245

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 108/318 (33%), Gaps = 87/318 (27%)
Query: 92  PRYRIL--SKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSINKY--REAAMIEIDVL 142
           PR R+     +G G FG+VVE        ++    VA+K+++       REA M E+ VL
Sbjct: 44  PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL 103
Query: 143 QRLARH----------DIGGTRCVQIRNWFDY--------RNHICIVFEKLGPSLYDFLR 184
             L  H           IGG   V I  +  Y        R     +  K  P++ +   
Sbjct: 104 SYLGNHMNIVNLLGACTIGGPTLV-ITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 162
Query: 185 KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS 244
                      +     Q+ + +AF+     IH DL   NILL      K+         
Sbjct: 163 LALDLE----DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKI--------- 209
Query: 245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTR-----HYRAPEVILGLGWNYPC 299
                              DFG       D +YVV         + APE I    + +  
Sbjct: 210 ------------------CDFGLARHIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 251
Query: 300 DLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARL 359
           D+WS G  L EL S                    LG  P+   +  D +  K  + G R+
Sbjct: 252 DVWSYGIFLWELFS--------------------LGSSPYPG-MPVDSKFYKMIKEGFRM 290
Query: 360 DWPDGATSR--DSMRAVW 375
             P+ A +   D M+  W
Sbjct: 291 LSPEHAPAEMYDIMKTCW 308

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I I F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 80  R---EPPFYIIIEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 135
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 136 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 177
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 178 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 232
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 233 RPEGCPEKVYELMRA 247

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 112/318 (35%), Gaps = 87/318 (27%)
Query: 92  PRYRIL--SKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSINKY--REAAMIEIDVL 142
           PR R+     +G G FG+VVE        ++    VA+K+++       REA M E+ VL
Sbjct: 21  PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL 80
Query: 143 QRLARH----------DIGGTRCVQIRNWFDY--------RNHICIVFEKLGPSLYDFLR 184
             L  H           IGG   V I  +  Y        R     +  K  P++ +   
Sbjct: 81  SYLGNHMNIVNLLGACTIGGPTLV-ITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 139
Query: 185 KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS 244
                      +     Q+ + +AF+     IH DL   NILL      K+ D+  L+R 
Sbjct: 140 LALDLE----DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFG-LARD 194
Query: 245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTR-----HYRAPEVILGLGWNYPC 299
            K+                          D +YVV         + APE I    + +  
Sbjct: 195 IKN--------------------------DSNYVVKGNARLPVKWMAPESIFNCVYTFES 228
Query: 300 DLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARL 359
           D+WS G  L EL S                    LG  P+   +  D +  K  + G R+
Sbjct: 229 DVWSYGIFLWELFS--------------------LGSSPYPG-MPVDSKFYKMIKEGFRM 267
Query: 360 DWPDGATSR--DSMRAVW 375
             P+ A +   D M+  W
Sbjct: 268 LSPEHAPAEMYDIMKTCW 285

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 35/246 (14%)
Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRC 155
            L ++G G FG VV+      +  VAIK+++  +   +  + E  V+  L+       + 
Sbjct: 13  FLKELGTGQFG-VVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHE-----KL 66
Query: 156 VQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           VQ+      +  I I+ E +    L ++LR+  +R F    + E+ + + E++ ++   +
Sbjct: 67  VQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQ 125
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
            +H DL   N L+     VKV D+  LSR   D  Y  +      ++             
Sbjct: 126 FLHRDLAARNCLVNDQGVVKVSDFG-LSRYVLDDEYTSSRGSKFPVR------------- 171
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL----FQTHENLEHLAMM 330
                    +  PEV++   ++   D+W+ G ++ E+ S   +    F   E  EH+A  
Sbjct: 172 ---------WSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG 222
Query: 331 ERVLGP 336
            R+  P
Sbjct: 223 LRLYRP 228

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 32/232 (13%)
Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRC 155
            + ++G G FG +V       K+ VAIK +R      E  + E +V+ +L+       + 
Sbjct: 14  FVQEIGSGQFG-LVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSH-----PKL 67
Query: 156 VQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           VQ+      +  IC+VFE +    L D+LR      F  + +  +   + E +A++ E  
Sbjct: 68  VQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEAC 126
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DL   N L+   + +KV D+  ++R   D  Y  +      +K             
Sbjct: 127 VIHRDLAARNCLVGENQVIKVSDFG-MTRFVLDDQYTSSTGTKFPVK------------- 172
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE 325
                    + +PEV     ++   D+WS G ++ E+ S G+  ++   N E
Sbjct: 173 ---------WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 215

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 112/318 (35%), Gaps = 87/318 (27%)
Query: 92  PRYRIL--SKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSINKY--REAAMIEIDVL 142
           PR R+     +G G FG+VVE        ++    VA+K+++       REA M E+ VL
Sbjct: 44  PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL 103
Query: 143 QRLARH----------DIGGTRCVQIRNWFDY--------RNHICIVFEKLGPSLYDFLR 184
             L  H           IGG   V I  +  Y        R     +  K  P++ +   
Sbjct: 104 SYLGNHMNIVNLLGACTIGGPTLV-ITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 162
Query: 185 KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS 244
                      +     Q+ + +AF+     IH DL   NILL      K+ D+  L+R 
Sbjct: 163 LALDLE----DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFG-LARD 217
Query: 245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTR-----HYRAPEVILGLGWNYPC 299
            K+                          D +YVV         + APE I    + +  
Sbjct: 218 IKN--------------------------DSNYVVKGNARLPVKWMAPESIFNCVYTFES 251
Query: 300 DLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARL 359
           D+WS G  L EL S                    LG  P+   +  D +  K  + G R+
Sbjct: 252 DVWSYGIFLWELFS--------------------LGSSPYPG-MPVDSKFYKMIKEGFRM 290
Query: 360 DWPDGATSR--DSMRAVW 375
             P+ A +   D M+  W
Sbjct: 291 LSPEHAPAEMYDIMKTCW 308

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 46/241 (19%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + +S++G+G FG V  C      +    LVA+K ++ S    +     EI +L+ L    
Sbjct: 26  KYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDF 85
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPS--LYDFLRKNSYRSFPIDLVREL--GRQLLE 205
           I   R V   ++   R  + +V E L PS  L DFL+++  R   +D  R L    Q+ +
Sbjct: 86  IVKYRGV---SYGPGRQSLRLVMEYL-PSGCLRDFLQRHRAR---LDASRLLLYSSQICK 138
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF-KNLPKSSAIKLID 264
            + ++   R +H DL   NIL+ S  +VK+ D+        D  Y+    P  S I    
Sbjct: 139 GMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPI---- 194
Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL-------CSGEAL 317
                              + APE +    ++   D+WS G +L EL       CS  A 
Sbjct: 195 ------------------FWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAE 236
Query: 318 F 318
           F
Sbjct: 237 F 237

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 112/318 (35%), Gaps = 87/318 (27%)
Query: 92  PRYRIL--SKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSINKY--REAAMIEIDVL 142
           PR R+     +G G FG+VVE        ++    VA+K+++       REA M E+ VL
Sbjct: 39  PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL 98
Query: 143 QRLARH----------DIGGTRCVQIRNWFDY--------RNHICIVFEKLGPSLYDFLR 184
             L  H           IGG   V I  +  Y        R     +  K  P++ +   
Sbjct: 99  SYLGNHMNIVNLLGACTIGGPTLV-ITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 157
Query: 185 KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS 244
                      +     Q+ + +AF+     IH DL   NILL      K+ D+  L+R 
Sbjct: 158 LALDLE----DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFG-LARD 212
Query: 245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTR-----HYRAPEVILGLGWNYPC 299
            K+                          D +YVV         + APE I    + +  
Sbjct: 213 IKN--------------------------DSNYVVKGNARLPVKWMAPESIFNCVYTFES 246
Query: 300 DLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARL 359
           D+WS G  L EL S                    LG  P+   +  D +  K  + G R+
Sbjct: 247 DVWSYGIFLWELFS--------------------LGSSPYPG-MPVDSKFYKMIKEGFRM 285
Query: 360 DWPDGATSR--DSMRAVW 375
             P+ A +   D M+  W
Sbjct: 286 LSPEHAPAEMYDIMKTCW 303

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 38/248 (15%)
Query: 95  RILSKMGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHD 149
           +I   +G G FG+V         +K+  VAIK ++     + R   + E  ++ +    +
Sbjct: 17  KIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPN 76
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     +++         + I+ E +   +L  FLR N  +   I LV  L R +   + 
Sbjct: 77  I-----IRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGML-RGIASGMR 130
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++ E+  +H DL   NIL+ S    KV D+   +FL  +S D +Y  +L     I+    
Sbjct: 131 YLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIR---- 186
Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL 324
                             + APE I    +    D WS G ++ E+ S GE  +    N 
Sbjct: 187 ------------------WTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQ 228
Query: 325 EHLAMMER 332
           + +  +E+
Sbjct: 229 DVINAIEQ 236

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I I F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 80  R---EPPFYIIIEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 135
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 136 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 177
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 178 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 232
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 233 RPEGCPEKVYELMRA 247

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 112/318 (35%), Gaps = 87/318 (27%)
Query: 92  PRYRIL--SKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSINKY--REAAMIEIDVL 142
           PR R+     +G G FG+VVE        ++    VA+K+++       REA M E+ VL
Sbjct: 37  PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL 96
Query: 143 QRLARH----------DIGGTRCVQIRNWFDY--------RNHICIVFEKLGPSLYDFLR 184
             L  H           IGG   V I  +  Y        R     +  K  P++ +   
Sbjct: 97  SYLGNHMNIVNLLGACTIGGPTLV-ITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 155
Query: 185 KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS 244
                      +     Q+ + +AF+     IH DL   NILL      K+ D+  L+R 
Sbjct: 156 LALDLE----DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFG-LARD 210
Query: 245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTR-----HYRAPEVILGLGWNYPC 299
            K+                          D +YVV         + APE I    + +  
Sbjct: 211 IKN--------------------------DSNYVVKGNARLPVKWMAPESIFNCVYTFES 244
Query: 300 DLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARL 359
           D+WS G  L EL S                    LG  P+   +  D +  K  + G R+
Sbjct: 245 DVWSYGIFLWELFS--------------------LGSSPYPG-MPVDSKFYKMIKEGFRM 283
Query: 360 DWPDGATSR--DSMRAVW 375
             P+ A +   D M+  W
Sbjct: 284 LSPEHAPAEMYDIMKTCW 301

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 32/231 (13%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           + ++G G FG +V       K+ VAIK +R      E  + E +V+ +L+       + V
Sbjct: 12  VQEIGSGQFG-LVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSH-----PKLV 65
Query: 157 QIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           Q+      +  IC+VFE +    L D+LR      F  + +  +   + E +A++ E  +
Sbjct: 66  QLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACV 124
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DL   N L+   + +KV D+  ++R   D  Y  +      +K              
Sbjct: 125 IHRDLAARNCLVGENQVIKVSDFG-MTRFVLDDQYTSSTGTKFPVK-------------- 169
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE 325
                   + +PEV     ++   D+WS G ++ E+ S G+  ++   N E
Sbjct: 170 --------WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 212

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 25  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I I F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 85  R---EPPFYIIIEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 140
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 141 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 182
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 183 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 237
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 238 RPEGCPEKVYELMRA 252

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 97  LSKMGEGTFGQV-VECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRC 155
           + ++G G FG V +  + N+ K  VAIK +R      E  + E +V+ +L+       + 
Sbjct: 10  VQEIGSGQFGLVHLGYWLNKDK--VAIKTIREGAMSEEDFIEEAEVMMKLSH-----PKL 62
Query: 156 VQIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           VQ+      +  IC+VFE +    L D+LR      F  + +  +   + E +A++ E  
Sbjct: 63  VQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEAC 121
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +IH DL   N L+   + +KV D+  ++R   D  Y  +      +K             
Sbjct: 122 VIHRDLAARNCLVGENQVIKVSDFG-MTRFVLDDQYTSSTGTKFPVK------------- 167
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE 325
                    + +PEV     ++   D+WS G ++ E+ S G+  ++   N E
Sbjct: 168 ---------WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 210

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 43/227 (18%)
Query: 98  SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEI---DVLQRLARHDIGGTR 154
           +KMGEG FG V + + N     VA+K        + AAM++I   ++ Q+  +      +
Sbjct: 37  NKMGEGGFGVVYKGYVNNTT--VAVK--------KLAAMVDITTEELKQQFDQEIKVMAK 86
Query: 155 C-----VQIRNWFDYRNHICIVFEKL-GPSLYDFLR-KNSYRSFPIDLVRELGRQLLESV 207
           C     V++  +    + +C+V+  +   SL D L   +        +  ++ +     +
Sbjct: 87  CQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGI 146
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            F+HE   IH D+K  NILL  A   K+ D+     S K                  F  
Sbjct: 147 NFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEK------------------FAQ 188
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
           T    +    +V T  Y APE + G       D++S G +L+E+ +G
Sbjct: 189 TVMXXR----IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITG 230

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 40/243 (16%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAM-----IEIDVLQRLARHDIGGT 153
           ++G G FG V + +   KK +  + +    N+  + A+      E +V+Q+L    I   
Sbjct: 377 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI--V 434
Query: 154 RCVQI---RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           R + I    +W      + +   +LGP L  +L++N  R      + EL  Q+   + ++
Sbjct: 435 RMIGICEAESWM-----LVMEMAELGP-LNKYLQQN--RHVKDKNIIELVHQVSMGMKYL 486
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
            E   +H DL   N+LLV+  Y K+ D+        D +Y+K                  
Sbjct: 487 EESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA----------------- 529
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAM 329
             Q H        + APE I    ++   D+WS G ++ E  S G+  ++  +  E  AM
Sbjct: 530 --QTHGKW--PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAM 585
Query: 330 MER 332
           +E+
Sbjct: 586 LEK 588

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 111/295 (37%), Gaps = 70/295 (23%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R  +   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 28  RLNLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIHI 87
Query: 146 ARH----DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLR---------KNSYRSF- 191
             H    ++ G  C +          + + F K G +L  +LR         K+ Y+ F 
Sbjct: 88  GHHLNVVNLLGA-CTKPGGPL----MVIVEFCKFG-NLSTYLRSKRNEFVPYKDLYKDFL 141
Query: 192 PIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF 251
            ++ +     Q+ + + F+   + IH DL   NILL     VK+ D+       KD  Y 
Sbjct: 142 TLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYV 201
Query: 252 KNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
           +       +K                      + APE I    +    D+WS G +L E+
Sbjct: 202 RKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFGVLLWEI 239
Query: 312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGAT 366
            S                    LG  P+  V + D    +  + G R+  PD  T
Sbjct: 240 FS--------------------LGASPYPGV-KIDEEFXRRLKEGTRMRAPDYTT 273

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           +G+G FGQ ++    E  E++ +K ++R   + +   + E+ V++ L   ++     V  
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           ++       +  + E +       + K+    +P        + +   +A++H + +IH 
Sbjct: 78  KD-----KRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHR 132
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKS-SAIKLIDFGSTTFEHQDHSY 277
           DL   N L+   + V V D+  L+R   D    K  P+   ++K  D        +    
Sbjct: 133 DLNSHNCLVRENKNVVVADFG-LARLMVDE---KTQPEGLRSLKKPD-------RKKRYT 181
Query: 278 VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
           VV   ++ APE+I G  ++   D++S G +L E+
Sbjct: 182 VVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEI 215

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 21  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 80
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I I F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 81  R---EPPFYIIIEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 136
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR                   +  G T   H    + 
Sbjct: 137 DLAARNCLVGENHLVKVADFG-LSR-------------------LMTGDTXTAHAGAKFP 176
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
           +    + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 177 IK---WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 233
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 234 RPEGCPEKVYELMRA 248

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 94/246 (38%), Gaps = 53/246 (21%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R ++   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 19  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 78
Query: 146 ARH----DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKN-----SYRSFPIDLV 196
             H    ++ G  C +           C    K G +L  +LR        Y+  P DL 
Sbjct: 79  GHHLNVVNLLGA-CTKPGGPLMVITEFC----KFG-NLSTYLRSKRNEFVPYKVAPEDLY 132
Query: 197 REL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD 247
           ++            Q+ + + F+   + IH DL   NILL     VK+ D+       KD
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD 192
Query: 248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCI 307
             Y +       +K                      + APE I    +    D+WS G +
Sbjct: 193 PDYVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFGVL 230
Query: 308 LVELCS 313
           L E+ S
Sbjct: 231 LWEIFS 236

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/239 (20%), Positives = 101/239 (42%), Gaps = 36/239 (15%)
Query: 90  LTPRYRILSKMGEGTFGQVVECFDNE---KKELVAIKIVRSINKYREAAMI--EIDVLQR 144
           L  +Y +   +GEG++G+V E  D+E   ++ +  +K  +        A +  EI +L+R
Sbjct: 3   LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRR 62
Query: 145 LARHDIGGTRCVQIRN--WFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           L   ++     +Q+ +  + + +  + +V E     + + L     + FP+        Q
Sbjct: 63  LRHKNV-----IQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQ 117
Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           L++ + ++H   ++H D+KP N+LL +   +K+                  L  + A+  
Sbjct: 118 LIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKI----------------SALGVAEALHP 161
Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGW--NYPCDLWSVGCILVELCSGEALFQ 319
                T    Q       +  ++ PE+  GL     +  D+WS G  L  + +G   F+
Sbjct: 162 FAADDTCRTSQ------GSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFE 214

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 40/243 (16%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAM-----IEIDVLQRLARHDIGGT 153
           ++G G FG V + +   KK +  + +    N+  + A+      E +V+Q+L    I   
Sbjct: 376 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI--V 433
Query: 154 RCVQI---RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           R + I    +W      + +   +LGP L  +L++N  R      + EL  Q+   + ++
Sbjct: 434 RMIGICEAESWM-----LVMEMAELGP-LNKYLQQN--RHVKDKNIIELVHQVSMGMKYL 485
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
            E   +H DL   N+LLV+  Y K+ D+        D +Y+K                  
Sbjct: 486 EESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA----------------- 528
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAM 329
             Q H        + APE I    ++   D+WS G ++ E  S G+  ++  +  E  AM
Sbjct: 529 --QTHGKW--PVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAM 584
Query: 330 MER 332
           +E+
Sbjct: 585 LEK 587

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 94/246 (38%), Gaps = 53/246 (21%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R ++   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 19  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 78
Query: 146 ARH----DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKN-----SYRSFPIDLV 196
             H    ++ G  C +           C    K G +L  +LR        Y+  P DL 
Sbjct: 79  GHHLNVVNLLGA-CTKPGGPLMVITEFC----KFG-NLSTYLRSKRNEFVPYKVAPEDLY 132
Query: 197 REL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD 247
           ++            Q+ + + F+   + IH DL   NILL     VK+ D+       KD
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD 192
Query: 248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCI 307
             Y +       +K                      + APE I    +    D+WS G +
Sbjct: 193 PDYVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFGVL 230
Query: 308 LVELCS 313
           L E+ S
Sbjct: 231 LWEIFS 236

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 36/230 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G G FG+V  C   +  ++ A+K +      + +    A+ E  +L  ++  D     C
Sbjct: 197 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 256
Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           +     F   + +  + + + G  L+  L ++    F    +R    +++  +  MH   
Sbjct: 257 MSYA--FHTPDKLSFILDLMNGGDLHYHLSQHGV--FSEADMRFYAAEIILGLEHMHNRF 312
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +++ DLKP NILL    +V++ D            + K  P +S                
Sbjct: 313 VVYRDLKPANILLDEHGHVRISDLGLAC------DFSKKKPHAS---------------- 350
Query: 275 HSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
               V T  Y APEV+  G+ ++   D +S+GC+L +L  G + F+ H+ 
Sbjct: 351 ----VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT 396

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 36/230 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G G FG+V  C   +  ++ A+K +      + +    A+ E  +L  ++  D     C
Sbjct: 196 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 255
Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           +     F   + +  + + + G  L+  L ++    F    +R    +++  +  MH   
Sbjct: 256 MSYA--FHTPDKLSFILDLMNGGDLHYHLSQHGV--FSEADMRFYAAEIILGLEHMHNRF 311
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +++ DLKP NILL    +V++ D            + K  P +S                
Sbjct: 312 VVYRDLKPANILLDEHGHVRISDLGLAC------DFSKKKPHAS---------------- 349
Query: 275 HSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
               V T  Y APEV+  G+ ++   D +S+GC+L +L  G + F+ H+ 
Sbjct: 350 ----VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT 395

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 36/230 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G G FG+V  C   +  ++ A+K +      + +    A+ E  +L  ++  D     C
Sbjct: 197 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 256
Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           +     F   + +  + + + G  L+  L ++    F    +R    +++  +  MH   
Sbjct: 257 MSYA--FHTPDKLSFILDLMNGGDLHYHLSQHGV--FSEADMRFYAAEIILGLEHMHNRF 312
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +++ DLKP NILL    +V++ D            + K  P +S                
Sbjct: 313 VVYRDLKPANILLDEHGHVRISDLGLAC------DFSKKKPHAS---------------- 350
Query: 275 HSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
               V T  Y APEV+  G+ ++   D +S+GC+L +L  G + F+ H+ 
Sbjct: 351 ----VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT 396

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 36/230 (15%)
Query: 100 MGEGTFGQVVECFDNEKKELVAIKIVRS----INKYREAAMIEIDVLQRLARHDIGGTRC 155
           +G G FG+V  C   +  ++ A+K +      + +    A+ E  +L  ++  D     C
Sbjct: 197 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 256
Query: 156 VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           +     F   + +  + + + G  L+  L ++    F    +R    +++  +  MH   
Sbjct: 257 MSYA--FHTPDKLSFILDLMNGGDLHYHLSQHGV--FSEADMRFYAAEIILGLEHMHNRF 312
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
           +++ DLKP NILL    +V++ D            + K  P +S                
Sbjct: 313 VVYRDLKPANILLDEHGHVRISDLGLAC------DFSKKKPHAS---------------- 350
Query: 275 HSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
               V T  Y APEV+  G+ ++   D +S+GC+L +L  G + F+ H+ 
Sbjct: 351 ----VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT 396

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 97/237 (40%), Gaps = 28/237 (11%)
Query: 99  KMGEGTFGQVVE-CFDNEKKEL-VAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           ++G G FG V +  +   KK++ VAIK+++      E A  E  + +    H +     V
Sbjct: 17  ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIV 73
Query: 157 QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLI 216
           ++         + ++    G  L+ FL        P+  V EL  Q+   + ++ E   +
Sbjct: 74  RLIGVCQAEALMLVMEMAGGGPLHKFLV-GKREEIPVSNVAELLHQVSMGMKYLEEKNFV 132
Query: 217 HTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS 276
           H DL   N+LLV+  Y K+ D+        D SY+      SA K               
Sbjct: 133 HRDLAARNVLLVNRHYAKISDFGLSKALGADDSYY---TARSAGKW-------------- 175
Query: 277 YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                  + APE I    ++   D+WS G  + E  S G+  ++  +  E +A +E+
Sbjct: 176 ----PLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQ 228

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 112/289 (38%), Gaps = 65/289 (22%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           ++L  +G+G FG V+    + +   VA+K +++ +   +A + E  V+ +L RH    + 
Sbjct: 196 KLLQTIGKGEFGDVM--LGDYRGNKVAVKCIKN-DATAQAFLAEASVMTQL-RH----SN 247
Query: 155 CVQIRNWF-DYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            VQ+     + +  + IV E +   SL D+LR         D + +    + E++ ++  
Sbjct: 248 LVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG 307
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
              +H DL   N+L+      KV D+     +S      K LP                 
Sbjct: 308 NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK-LPVK--------------- 351
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER 332
                      + APE +    ++   D+WS G +L E+ S                   
Sbjct: 352 -----------WTAPEALREKKFSTKSDVWSFGILLWEIYS------------------- 381
Query: 333 VLGPLPHHMVIRADR--RAEKYFRRGARLDWPDGA--TSRDSMRAVWKL 377
             G +P+  +   D   R EK    G ++D PDG      D M+  W L
Sbjct: 382 -FGRVPYPRIPLKDVVPRVEK----GYKMDAPDGCPPAVYDVMKNCWHL 425

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 28/237 (11%)
Query: 99  KMGEGTFGQVVE-CFDNEKKEL-VAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           ++G G FG V +  +   KK++ VAIK+++      E A  E  + +    H +     V
Sbjct: 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT---EKADTEEMMREAQIMHQLDNPYIV 399
Query: 157 QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLI 216
           ++         + ++    G  L+ FL        P+  V EL  Q+   + ++ E   +
Sbjct: 400 RLIGVCQAEALMLVMEMAGGGPLHKFL-VGKREEIPVSNVAELLHQVSMGMKYLEEKNFV 458
Query: 217 HTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS 276
           H +L   N+LLV+  Y K+ D+        D SY+      SA K               
Sbjct: 459 HRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYT---ARSAGKW-------------- 501
Query: 277 YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                  + APE I    ++   D+WS G  + E  S G+  ++  +  E +A +E+
Sbjct: 502 ----PLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQ 554

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 122/319 (38%), Gaps = 69/319 (21%)
Query: 78  KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVE-----CFDNEKKELVAIKIVRSINKYR 132
           K GH+    GE    +  +L ++G+G+FG V E         E +  VA+K V      R
Sbjct: 2   KKGHHHHHHGEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR 61
Query: 133 E--AAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLR----- 184
           E    + E  V++    H +     V++           +V E +    L  +LR     
Sbjct: 62  ERIEFLNEASVMKGFTCHHV-----VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPE 116
Query: 185 --KNSYRSFP-IDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL 241
              N  R  P +  + ++  ++ + +A+++  + +H DL   N ++     VK+ D+  +
Sbjct: 117 AENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFG-M 175
Query: 242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDL 301
           +R   +  Y++   K                     ++  R + APE +    +    D+
Sbjct: 176 TRDIYETDYYRKGGKG--------------------LLPVR-WMAPESLKDGVFTTSSDM 214
Query: 302 WSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD 360
           WS G +L E+ S  E  +Q   N       E+VL                K+   G  LD
Sbjct: 215 WSFGVVLWEITSLAEQPYQGLSN-------EQVL----------------KFVMDGGYLD 251
Query: 361 WPDGATSR--DSMRAVWKL 377
            PD    R  D MR  W+ 
Sbjct: 252 QPDNCPERVTDLMRMCWQF 270

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 91/233 (39%), Gaps = 42/233 (18%)
Query: 100 MGEGTFGQVVEC--FDNEKKELV---AIKIVRSINKY--REAAMIEIDVLQRLARHD--- 149
           +G G FG+VVE   F   K++ V   A+K+++S      +EA M E+ ++  L +H+   
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 113
Query: 150 ------IGGTRCVQIRNWFDYRNHICIVFEKLGPSL---YDFLRKNSYRSFPIDLVRELG 200
                   G   + I  +  Y + +  +  K  P L   Y+       +    DL+    
Sbjct: 114 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKRPPGLEYSYNPSHNPEEQLSSRDLLH-FS 172
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
            Q+ + +AF+     IH D+   N+LL +    K+ D+        D +Y         +
Sbjct: 173 SQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPV 232
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
           K                      + APE I    +    D+WS G +L E+ S
Sbjct: 233 K----------------------WMAPESIFDCVYTVQSDVWSYGILLWEIFS 263

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 38/248 (15%)
Query: 95  RILSKMGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHD 149
           +I   +G G FG+V         +++  VAIK ++S    K R   + E  ++ +    +
Sbjct: 10  KIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPN 69
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           +     + +         + I+ E +   SL  FLR+N  +   I LV  L R +   + 
Sbjct: 70  V-----IHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGML-RGIAAGMK 123
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++ ++  +H  L   NIL+ S    KV D+   +FL   + D +Y   L     I+    
Sbjct: 124 YLADMNYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIR---- 179
Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL 324
                             + APE I    +    D+WS G ++ E+ S GE  +    N 
Sbjct: 180 ------------------WTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ 221
Query: 325 EHLAMMER 332
           + +  +E+
Sbjct: 222 DVINAIEQ 229

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 104/246 (42%), Gaps = 35/246 (14%)
Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRC 155
            L ++G G FG VV+      +  VAIK+++  +   +  + E  V+  L+       + 
Sbjct: 28  FLKELGTGQFG-VVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHE-----KL 81
Query: 156 VQIRNWFDYRNHICIVFEKLGPS-LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR 214
           VQ+      +  I I+ E +    L ++LR+  +R F    + E+ + + E++ ++   +
Sbjct: 82  VQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR-FQTQQLLEMCKDVCEAMEYLESKQ 140
Query: 215 LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD 274
            +H DL   N L+     VKV D+  LSR   D     ++     ++             
Sbjct: 141 FLHRDLAARNCLVNDQGVVKVSDFG-LSRYVLDDEETSSVGSKFPVR------------- 186
Query: 275 HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL----FQTHENLEHLAMM 330
                    +  PEV++   ++   D+W+ G ++ E+ S   +    F   E  EH+A  
Sbjct: 187 ---------WSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQG 237
Query: 331 ERVLGP 336
            R+  P
Sbjct: 238 LRLYRP 243

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 32/231 (13%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           + ++G G FG +V       K+ VAIK ++  +   +  + E +V+ +L+       + V
Sbjct: 32  VQEIGSGQFG-LVHLGYWLNKDKVAIKTIKEGSMSEDDFIEEAEVMMKLSH-----PKLV 85
Query: 157 QIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           Q+      +  IC+VFE +    L D+LR      F  + +  +   + E +A++ E  +
Sbjct: 86  QLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACV 144
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DL   N L+   + +KV D+  ++R   D  Y  +      +K              
Sbjct: 145 IHRDLAARNCLVGENQVIKVSDFG-MTRFVLDDQYTSSTGTKFPVK-------------- 189
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE 325
                   + +PEV     ++   D+WS G ++ E+ S G+  ++   N E
Sbjct: 190 --------WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 232

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 80  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 135
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 136 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 177
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 178 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 232
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 233 RPEGCPEKVYELMRA 247

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 25  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 85  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 140
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 141 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 182
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 183 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 237
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 238 RPEGCPEKVYELMRA 252

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 37/221 (16%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           ++L  +G+G FG V+    + +   VA+K +++ +   +A + E  V+ +L RH    + 
Sbjct: 15  KLLQTIGKGEFGDVM--LGDYRGNKVAVKCIKN-DATAQAFLAEASVMTQL-RH----SN 66
Query: 155 CVQIRNWF-DYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            VQ+     + +  + IV E +   SL D+LR         D + +    + E++ ++  
Sbjct: 67  LVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG 126
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
              +H DL   N+L+      KV D+     +S      K LP                 
Sbjct: 127 NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK-LPVK--------------- 170
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                      + APE +    ++   D+WS G +L E+ S
Sbjct: 171 -----------WTAPEALREAAFSTKSDVWSFGILLWEIYS 200

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 80  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 135
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 136 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 177
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 178 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 232
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 233 RPEGCPEKVYELMRA 247

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 24  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 83
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 84  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 139
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 140 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 181
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 182 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 236
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 237 RPEGCPEKVYELMRA 251

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 40/243 (16%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAM-----IEIDVLQRLARHDIGGT 153
           ++G G FG V + +   KK +  + +    N+  + A+      E +V+Q+L    I   
Sbjct: 32  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI--V 89
Query: 154 RCVQI---RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           R + I    +W      + +   +LGP L  +L++N  R      + EL  Q+   + ++
Sbjct: 90  RMIGICEAESWM-----LVMEMAELGP-LNKYLQQN--RHVKDKNIIELVHQVSMGMKYL 141
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
            E   +H DL   N+LLV+  Y K+ D+        D +Y+K                  
Sbjct: 142 EESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK------------------ 183
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAM 329
             Q H        + APE I    ++   D+WS G ++ E  S G+  ++  +  E  AM
Sbjct: 184 -AQTHG--KWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAM 240
Query: 330 MER 332
           +E+
Sbjct: 241 LEK 243

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 25  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 85  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 140
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 141 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 182
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 183 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 237
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 238 RPEGCPEKVYELMRA 252

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 80  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 135
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 136 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 177
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 178 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 232
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 233 RPEGCPEKVYELMRA 247

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 93/248 (37%), Gaps = 57/248 (22%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R ++   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 28  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 87
Query: 146 ARHDIGGTRCVQIRNWFDYRNH------ICIVFEKLGPSLYDFLRKN-----SYRSFPID 194
             H       + + N             + + F K G +L  +LR        Y+  P D
Sbjct: 88  GHH-------LNVVNLLGACTKPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKVAPED 139
Query: 195 LVREL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
           L ++            Q+ + + F+   + IH DL   NILL     VK+ D+       
Sbjct: 140 LYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIX 199
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
           KD    +       +K                      + APE I    +    D+WS G
Sbjct: 200 KDPDXVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFG 237
Query: 306 CILVELCS 313
            +L E+ S
Sbjct: 238 VLLWEIFS 245

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 106/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 25  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 85  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 140
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR                   +  G T   H    + 
Sbjct: 141 DLAARNCLVGENHLVKVADFG-LSR-------------------LMTGDTXTAHAGAKFP 180
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
           +    + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 181 IK---WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 237
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 238 RPEGCPEKVYELMRA 252

>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396 Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 85  AIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQR 144
           A+    T  +  L K+G G FG V +C       + AIK  RS  K    ++ E + L+ 
Sbjct: 2   AMKSRYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIK--RS-KKPLAGSVDEQNALRE 58
Query: 145 LARHDIGGTRCVQIRNWFDYR--NHICIVFEKL-GPSLYDFLRKNSYRSFPI-------D 194
           +  H + G     +R +  +   +H+ I  E   G SL D + +N YR           D
Sbjct: 59  VYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN-YRIMSYFKEAELKD 117
Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILL 227
           L+ ++GR L     ++H + L+H D+KP NI +
Sbjct: 118 LLLQVGRGL----RYIHSMSLVHMDIKPSNIFI 146

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 93/248 (37%), Gaps = 57/248 (22%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R ++   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 19  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 78
Query: 146 ARHDIGGTRCVQIRNWFDYRNH------ICIVFEKLGPSLYDFLRKN-----SYRSFPID 194
             H       + + N             + + F K G +L  +LR        Y+  P D
Sbjct: 79  GHH-------LNVVNLLGACTKPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKVAPED 130
Query: 195 LVREL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
           L ++            Q+ + + F+   + IH DL   NILL     VK+ D+       
Sbjct: 131 LYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIX 190
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
           KD    +       +K                      + APE I    +    D+WS G
Sbjct: 191 KDPDXVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFG 228
Query: 306 CILVELCS 313
            +L E+ S
Sbjct: 229 VLLWEIFS 236

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 20  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 80  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 135
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 136 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 177
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 178 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 232
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 233 RPEGCPEKVYELMRA 247

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 44/240 (18%)
Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + +S++G+G FG V  C      +    LVA+K ++ S    +     EI +L+ L    
Sbjct: 10  KYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDF 69
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPS--LYDFLRKNSYRSFPIDLVREL--GRQLLE 205
           I   R V   ++   R  + +V E L PS  L DFL+++  R   +D  R L    Q+ +
Sbjct: 70  IVKYRGV---SYGPGRPELRLVMEYL-PSGCLRDFLQRHRAR---LDASRLLLYSSQICK 122
Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            + ++   R +H DL   NIL+ S  +VK+ D+             K LP       +D 
Sbjct: 123 GMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA----------KLLP-------LDK 165
Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL-------CSGEALF 318
                     S +     + APE +    ++   D+WS G +L EL       CS  A F
Sbjct: 166 DXXVVREPGQSPIF----WYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEF 221

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 132 REAAMIEIDVLQRLARHDIGGTRCVQI---RNWFDYRNHICIVFEKLGPSLYDFLRKNSY 188
           ++  + E +V+Q+L    I   R + I    +W      + +   +LGP L  +L++N  
Sbjct: 50  KDELLAEANVMQQLDNPYI--VRMIGICEAESWM-----LVMEMAELGP-LNKYLQQN-- 99
Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
           R      + EL  Q+   + ++ E   +H DL   N+LLV+  Y K+ D+        D 
Sbjct: 100 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 159
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL 308
           +Y+K                    Q H        + APE I    ++   D+WS G ++
Sbjct: 160 NYYK-------------------AQTHG--KWPVKWYAPECINYYKFSSKSDVWSFGVLM 198
Query: 309 VELCS-GEALFQTHENLEHLAMMER 332
            E  S G+  ++  +  E  AM+E+
Sbjct: 199 WEAFSYGQKPYRGMKGSEVTAMLEK 223

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 132 REAAMIEIDVLQRLARHDIGGTRCVQI---RNWFDYRNHICIVFEKLGPSLYDFLRKNSY 188
           ++  + E +V+Q+L    I   R + I    +W      + +   +LGP L  +L++N  
Sbjct: 56  KDELLAEANVMQQLDNPYI--VRMIGICEAESWM-----LVMEMAELGP-LNKYLQQN-- 105
Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
           R      + EL  Q+   + ++ E   +H DL   N+LLV+  Y K+ D+        D 
Sbjct: 106 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 165
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL 308
           +Y+K                    Q H        + APE I    ++   D+WS G ++
Sbjct: 166 NYYK-------------------AQTHG--KWPVKWYAPECINYYKFSSKSDVWSFGVLM 204
Query: 309 VELCS-GEALFQTHENLEHLAMMER 332
            E  S G+  ++  +  E  AM+E+
Sbjct: 205 WEAFSYGQKPYRGMKGSEVTAMLEK 229

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 132 REAAMIEIDVLQRLARHDIGGTRCVQI---RNWFDYRNHICIVFEKLGPSLYDFLRKNSY 188
           ++  + E +V+Q+L    I   R + I    +W      + +   +LGP L  +L++N  
Sbjct: 72  KDELLAEANVMQQLDNPYI--VRMIGICEAESWM-----LVMEMAELGP-LNKYLQQN-- 121
Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
           R      + EL  Q+   + ++ E   +H DL   N+LLV+  Y K+ D+        D 
Sbjct: 122 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 181
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL 308
           +Y+K                    Q H        + APE I    ++   D+WS G ++
Sbjct: 182 NYYK-------------------AQTHG--KWPVKWYAPECINYYKFSSKSDVWSFGVLM 220
Query: 309 VELCS-GEALFQTHENLEHLAMMER 332
            E  S G+  ++  +  E  AM+E+
Sbjct: 221 WEAFSYGQKPYRGMKGSEVTAMLEK 245

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 132 REAAMIEIDVLQRLARHDIGGTRCVQI---RNWFDYRNHICIVFEKLGPSLYDFLRKNSY 188
           ++  + E +V+Q+L    I   R + I    +W      + +   +LGP L  +L++N  
Sbjct: 72  KDELLAEANVMQQLDNPYI--VRMIGICEAESWM-----LVMEMAELGP-LNKYLQQN-- 121
Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
           R      + EL  Q+   + ++ E   +H DL   N+LLV+  Y K+ D+        D 
Sbjct: 122 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 181
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL 308
           +Y+K                    Q H        + APE I    ++   D+WS G ++
Sbjct: 182 NYYK-------------------AQTHG--KWPVKWYAPECINYYKFSSKSDVWSFGVLM 220
Query: 309 VELCS-GEALFQTHENLEHLAMMER 332
            E  S G+  ++  +  E  AM+E+
Sbjct: 221 WEAFSYGQKPYRGMKGSEVTAMLEK 245

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 132 REAAMIEIDVLQRLARHDIGGTRCVQI---RNWFDYRNHICIVFEKLGPSLYDFLRKNSY 188
           ++  + E +V+Q+L    I   R + I    +W      + +   +LGP L  +L++N  
Sbjct: 62  KDELLAEANVMQQLDNPYI--VRMIGICEAESWM-----LVMEMAELGP-LNKYLQQN-- 111
Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
           R      + EL  Q+   + ++ E   +H DL   N+LLV+  Y K+ D+        D 
Sbjct: 112 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 171
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL 308
           +Y+K                    Q H        + APE I    ++   D+WS G ++
Sbjct: 172 NYYK-------------------AQTHG--KWPVKWYAPECINYYKFSSKSDVWSFGVLM 210
Query: 309 VELCS-GEALFQTHENLEHLAMMER 332
            E  S G+  ++  +  E  AM+E+
Sbjct: 211 WEAFSYGQKPYRGMKGSEVTAMLEK 235

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 22  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 82  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 137
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 138 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 179
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 180 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 234
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 235 RPEGCPEKVYELMRA 249

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 25  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 85  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 140
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 141 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 182
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 183 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 237
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 238 RPEGCPEKVYELMRA 252

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 43/227 (18%)
Query: 98  SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEI---DVLQRLARHDIGGTR 154
           +KMGEG FG V + + N     VA+K        + AAM++I   ++ Q+  +      +
Sbjct: 31  NKMGEGGFGVVYKGYVNNTT--VAVK--------KLAAMVDITTEELKQQFDQEIKVMAK 80
Query: 155 C-----VQIRNWFDYRNHICIVFEKL-GPSLYDFLR-KNSYRSFPIDLVRELGRQLLESV 207
           C     V++  +    + +C+V+  +   SL D L   +        +  ++ +     +
Sbjct: 81  CQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGI 140
Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            F+HE   IH D+K  NILL  A   K+ D+     S K                  F  
Sbjct: 141 NFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEK------------------FAQ 182
Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                +    +V T  Y APE + G       D++S G +L+E+ +G
Sbjct: 183 XVMXXR----IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITG 224

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 22  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 82  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 137
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 138 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 179
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 180 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 234
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 235 RPEGCPEKVYELMRA 249

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 91/244 (37%), Gaps = 53/244 (21%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R  +   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 28  RLNLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIHI 87
Query: 146 ARHDIGGTRCVQIRNWFDYRNH------ICIVFEKLGPSLYDFLRKNSYRSFPI-DLVRE 198
             H       + + N             + + F K G +L  +LR       P  DL ++
Sbjct: 88  GHH-------LNVVNLLGACTKPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKDLYKD 139
Query: 199 L---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS 249
                       Q+ + + F+   + IH DL   NILL     VK+ D+       KD  
Sbjct: 140 FLTLEHLICYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 199
Query: 250 YFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV 309
           Y +       +K                      + APE I    +    D+WS G +L 
Sbjct: 200 YVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFGVLLW 237
Query: 310 ELCS 313
           E+ S
Sbjct: 238 EIFS 241

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 33  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 92
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 93  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 148
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 149 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 190
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 191 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 245
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 246 RPEGCPEKVYELMRA 260

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 46/230 (20%)
Query: 95  RILSKMGEGTFGQVVEC-FDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           R+L K+G+G+FG V    +D    + V++ +            ++ DVL +    D    
Sbjct: 21  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAV----------KCLKPDVLSQPEAMD-DFI 69
Query: 154 RCVQIRNWFDYRNHICIVFEKLGP------------SLYDFLRKNSYRSFPIDLVRELGR 201
           R V   +  D+RN I +    L P            SL D LRK+    F +  +     
Sbjct: 70  REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGH-FLLGTLSRYAV 128
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+ E + ++   R IH DL   N+LL + + VK+ D+  +          + LP++    
Sbjct: 129 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM----------RALPQN---- 174
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
             D      EH+   +      + APE +    +++  D W  G  L E+
Sbjct: 175 --DDHXVMQEHRKVPFA-----WCAPESLKTRTFSHASDTWMFGVTLWEM 217

>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed With Inhibitor Pd0407824 Length = 289

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 18/147 (12%)
Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI 150
           T  +  L K+G G FG V +C       + AIK  RS  K    ++ E + L+ +  H +
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIK--RS-KKPLAGSVDEQNALREVYAHAV 66
Query: 151 GGTRCVQIRNWFDYR--NHICIVFEKL-GPSLYDFLRKNSYRSFPI-------DLVRELG 200
            G     +R +  +   +H+ I  E   G SL D + +N YR           DL+ ++G
Sbjct: 67  LGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN-YRIMSYFKEAELKDLLLQVG 125
Query: 201 RQLLESVAFMHELRLIHTDLKPENILL 227
           R L     ++H + L+H D+KP NI +
Sbjct: 126 RGL----RYIHSMSLVHMDIKPSNIFI 148

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 35/205 (17%)
Query: 132 REAAMIEIDVLQRLARHDIGGTRCVQI---RNWFDYRNHICIVFEKLGPSLYDFLRKNSY 188
           ++  + E +V+Q+L    I   R + I    +W      + +   +LGP L  +L++N  
Sbjct: 52  KDELLAEANVMQQLDNPYI--VRMIGICEAESWM-----LVMEMAELGP-LNKYLQQN-- 101
Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
           R      + EL  Q+   + ++ E   +H DL   N+LLV+  Y K+ D+        D 
Sbjct: 102 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 161
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL 308
           +Y+K                    Q H        + APE I    ++   D+WS G ++
Sbjct: 162 NYYK-------------------AQTHG--KWPVKWYAPECINYYKFSSKSDVWSFGVLM 200
Query: 309 VELCS-GEALFQTHENLEHLAMMER 332
            E  S G+  ++  +  E  AM+E+
Sbjct: 201 WEAFSYGQKPYRGMKGSEVTAMLEK 225

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 93/248 (37%), Gaps = 57/248 (22%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R ++   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 28  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 87
Query: 146 ARHDIGGTRCVQIRNWFDYRNH------ICIVFEKLGPSLYDFLRKN-----SYRSFPID 194
             H       + + N             + + F K G +L  +LR        Y+  P D
Sbjct: 88  GHH-------LNVVNLLGACTKPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKVAPED 139
Query: 195 LVREL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
           L ++            Q+ + + F+   + IH DL   NILL     VK+ D+       
Sbjct: 140 LYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIY 199
Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
           KD    +       +K                      + APE I    +    D+WS G
Sbjct: 200 KDPDXVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFG 237
Query: 306 CILVELCS 313
            +L E+ S
Sbjct: 238 VLLWEIFS 245

>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839 Length = 287

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 18/147 (12%)
Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI 150
           T  +  L K+G G FG V +C       + AIK  RS  K    ++ E + L+ +  H +
Sbjct: 8   TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIK--RS-KKPLAGSVDEQNALREVYAHAV 64
Query: 151 GGTRCVQIRNWFDYR--NHICIVFEKL-GPSLYDFLRKNSYRSFPI-------DLVRELG 200
            G     +R +  +   +H+ I  E   G SL D + +N YR           DL+ ++G
Sbjct: 65  LGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN-YRIMSYFKEAELKDLLLQVG 123
Query: 201 RQLLESVAFMHELRLIHTDLKPENILL 227
           R L     ++H + L+H D+KP NI +
Sbjct: 124 RGL----RYIHSMSLVHMDIKPSNIFI 146

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 46/230 (20%)
Query: 95  RILSKMGEGTFGQVVEC-FDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           R+L K+G+G+FG V    +D    + V++ +            ++ DVL +    D    
Sbjct: 11  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAV----------KCLKPDVLSQPEAMD-DFI 59
Query: 154 RCVQIRNWFDYRNHICIVFEKLGP------------SLYDFLRKNSYRSFPIDLVRELGR 201
           R V   +  D+RN I +    L P            SL D LRK+    F +  +     
Sbjct: 60  REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGH-FLLGTLSRYAV 118
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+ E + ++   R IH DL   N+LL + + VK+ D+  +          + LP++    
Sbjct: 119 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM----------RALPQN---- 164
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
             D      EH+   +      + APE +    +++  D W  G  L E+
Sbjct: 165 --DDHXVMQEHRKVPFA-----WCAPESLKTRTFSHASDTWMFGVTLWEM 207

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/223 (20%), Positives = 98/223 (43%), Gaps = 34/223 (15%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           + ++G G +G V +       +++A+K +R+    +E   + +D+   ++   +     V
Sbjct: 12  IMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDL--DISMRTVDCPFTV 69
Query: 157 QIRNWFDYRNHICIVFEKLGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMH-EL 213
                      + I  E +  SL  F ++  +  ++ P D++ ++   +++++  +H +L
Sbjct: 70  TFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL 129
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
            +IH D+KP N+L+ +   VK+ D+         G    ++ K      ID G       
Sbjct: 130 SVIHRDVKPSNVLINALGQVKMCDFGI------SGYLVDDVAKD-----IDAG------- 171
Query: 274 DHSYVVSTRHYRAPEVI----LGLGWNYPCDLWSVGCILVELC 312
                   + Y APE I       G++   D+WS+G  ++EL 
Sbjct: 172 -------CKPYMAPERINPELNQKGYSVKSDIWSLGITMIELA 207

>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770 Length = 285

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 18/147 (12%)
Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI 150
           T  +  L K+G G FG V +C       + AIK  RS  K    ++ E + L+ +  H +
Sbjct: 6   TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIK--RS-KKPLAGSVDEQNALREVYAHAV 62
Query: 151 GGTRCVQIRNWFDYR--NHICIVFEKL-GPSLYDFLRKNSYRSFPI-------DLVRELG 200
            G     +R +  +   +H+ I  E   G SL D + +N YR           DL+ ++G
Sbjct: 63  LGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISEN-YRIMSYFKEAELKDLLLQVG 121
Query: 201 RQLLESVAFMHELRLIHTDLKPENILL 227
           R L     ++H + L+H D+KP NI +
Sbjct: 122 RGL----RYIHSMSLVHMDIKPSNIFI 144

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 93/246 (37%), Gaps = 53/246 (21%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R ++   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 19  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 78
Query: 146 ARH----DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKN-----SYRSFPIDLV 196
             H    ++ G  C +           C    K G +L  +LR        Y+  P DL 
Sbjct: 79  GHHLNVVNLLGA-CTKPGGPLMVITEFC----KFG-NLSTYLRSKRNEFVPYKVAPEDLY 132
Query: 197 REL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD 247
           ++            Q+ + + F+   + IH DL   NILL     VK+ D+       KD
Sbjct: 133 KDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKD 192
Query: 248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCI 307
               +       +K                      + APE I    +    D+WS G +
Sbjct: 193 PDXVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFGVL 230
Query: 308 LVELCS 313
           L E+ S
Sbjct: 231 LWEIFS 236

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 46/230 (20%)
Query: 95  RILSKMGEGTFGQVVEC-FDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           R+L K+G+G+FG V    +D    + V++ +            ++ DVL +    D    
Sbjct: 21  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAV----------KCLKPDVLSQPEAMD-DFI 69
Query: 154 RCVQIRNWFDYRNHICIVFEKLGP------------SLYDFLRKNSYRSFPIDLVRELGR 201
           R V   +  D+RN I +    L P            SL D LRK+    F +  +     
Sbjct: 70  REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGH-FLLGTLSRYAV 128
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+ E + ++   R IH DL   N+LL + + VK+ D+  +          + LP++    
Sbjct: 129 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM----------RALPQN---- 174
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                   +  Q+H  V     + APE +    +++  D W  G  L E+
Sbjct: 175 -----DDHYVMQEHRKVPFA--WCAPESLKTRTFSHASDTWMFGVTLWEM 217

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 34/244 (13%)
Query: 95  RILSKMGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHD 149
           +I   +G G FG+V         +++  VAIK +++   +K R   + E  ++ +    +
Sbjct: 32  KIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPN 91
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     + +         + I+ E +   SL  FLRKN  R   I LV  L R +   + 
Sbjct: 92  I-----IHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGML-RGIGSGMK 145
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++ ++  +H DL   NIL+ S    KV D+  +SR  +D        +   I +      
Sbjct: 146 YLSDMSAVHRDLAARNILVNSNLVCKVSDFG-MSRVLEDDPEAAYTTRGGKIPI------ 198
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHL 327
                          + APE I    +    D+WS G ++ E+ S GE  +    N + +
Sbjct: 199 --------------RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVI 244
Query: 328 AMME 331
             +E
Sbjct: 245 KAIE 248

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 106/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 18  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I I F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 78  R---EPPFYIIIEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 133
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR                   +  G T   H    + 
Sbjct: 134 DLAARNCLVGENHLVKVADFG-LSR-------------------LMTGDTXTAHAGAKFP 173
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
           +    + APE +    ++   D+W+ G +L E+ +       G    Q +E LE    ME
Sbjct: 174 IK---WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELLEKDYRME 230
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 231 RPEGCPEKVYELMRA 245

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 46/230 (20%)
Query: 95  RILSKMGEGTFGQVVEC-FDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           R+L K+G+G+FG V    +D    + V++ +            ++ DVL +    D    
Sbjct: 11  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAV----------KCLKPDVLSQPEAMD-DFI 59
Query: 154 RCVQIRNWFDYRNHICIVFEKLGP------------SLYDFLRKNSYRSFPIDLVRELGR 201
           R V   +  D+RN I +    L P            SL D LRK+    F +  +     
Sbjct: 60  REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGH-FLLGTLSRYAV 118
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+ E + ++   R IH DL   N+LL + + VK+ D+  +          + LP++    
Sbjct: 119 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM----------RALPQN---- 164
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                   +  Q+H  V     + APE +    +++  D W  G  L E+
Sbjct: 165 -----DDHYVMQEHRKVPFA--WCAPESLKTRTFSHASDTWMFGVTLWEM 207

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 99/244 (40%), Gaps = 34/244 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 227 KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 286
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 287 R---EPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 342
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           +L   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 343 NLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 384
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 385 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 439
Query: 332 RVLG 335
           R  G
Sbjct: 440 RPEG 443

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 55/246 (22%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R ++   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 30  RLKLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEHRALMSELKILIHI 89
Query: 146 ARHDIGGTRCVQIRNWFDYRNH------ICIVFEKLGPSLYDFLR--KNSYRSF-PIDLV 196
             H       + + N             + + F K G +L  +LR  +N +  + P DL 
Sbjct: 90  GHH-------LNVVNLLGACTKPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKPEDLY 141
Query: 197 REL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD 247
           ++            Q+ + + F+   + IH DL   NILL     VK+ D+       KD
Sbjct: 142 KDFLTLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIXKD 201
Query: 248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCI 307
               +       +K                      + APE I    +    D+WS G +
Sbjct: 202 PDXVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFGVL 239
Query: 308 LVELCS 313
           L E+ S
Sbjct: 240 LWEIFS 245

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 46/230 (20%)
Query: 95  RILSKMGEGTFGQVVEC-FDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           R+L K+G+G+FG V    +D    + V++ +            ++ DVL +    D    
Sbjct: 15  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAV----------KCLKPDVLSQPEAMD-DFI 63
Query: 154 RCVQIRNWFDYRNHICIVFEKLGP------------SLYDFLRKNSYRSFPIDLVRELGR 201
           R V   +  D+RN I +    L P            SL D LRK+    F +  +     
Sbjct: 64  REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGH-FLLGTLSRYAV 122
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+ E + ++   R IH DL   N+LL + + VK+ D+  +          + LP++    
Sbjct: 123 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM----------RALPQN---- 168
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                   +  Q+H  V     + APE +    +++  D W  G  L E+
Sbjct: 169 -----DDHYVMQEHRKVPFA--WCAPESLKTRTFSHASDTWMFGVTLWEM 211

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 37/221 (16%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           ++L  +G+G FG V+    + +   VA+K +++ +   +A + E  V+ +L RH    + 
Sbjct: 24  KLLQTIGKGEFGDVM--LGDYRGNKVAVKCIKN-DATAQAFLAEASVMTQL-RH----SN 75
Query: 155 CVQIRNWF-DYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            VQ+     + +  + IV E +   SL D+LR         D + +    + E++ ++  
Sbjct: 76  LVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG 135
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
              +H DL   N+L+      KV D+     +S      K LP                 
Sbjct: 136 NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK-LPVK--------------- 179
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                      + APE +    ++   D+WS G +L E+ S
Sbjct: 180 -----------WTAPEALREKKFSTKSDVWSFGILLWEIYS 209

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 46/230 (20%)
Query: 95  RILSKMGEGTFGQVVEC-FDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           R+L K+G+G+FG V    +D    + V++ +            ++ DVL +    D    
Sbjct: 15  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAV----------KCLKPDVLSQPEAMD-DFI 63
Query: 154 RCVQIRNWFDYRNHICIVFEKLGP------------SLYDFLRKNSYRSFPIDLVRELGR 201
           R V   +  D+RN I +    L P            SL D LRK+    F +  +     
Sbjct: 64  REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGH-FLLGTLSRYAV 122
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+ E + ++   R IH DL   N+LL + + VK+ D+  +          + LP++    
Sbjct: 123 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM----------RALPQN---- 168
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                   +  Q+H  V     + APE +    +++  D W  G  L E+
Sbjct: 169 -----DDHYVMQEHRKVPFA--WCAPESLKTRTFSHASDTWMFGVTLWEM 211

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 22  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 82  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 137
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y         IK                 
Sbjct: 138 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAPAGAKFPIK----------------- 179
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 180 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 234
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 235 RPEGCPEKVYELMRA 249

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 34/244 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 266 KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 325
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R    Y   I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 326 REPPFY---IITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 381
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           +L   N L+     VKV D+  LSR     +Y  +      IK                 
Sbjct: 382 NLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAHAGAKFPIK----------------- 423
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 424 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 478
Query: 332 RVLG 335
           R  G
Sbjct: 479 RPEG 482

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 46/230 (20%)
Query: 95  RILSKMGEGTFGQVVEC-FDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           R+L K+G+G+FG V    +D    + V++ +            ++ DVL +    D    
Sbjct: 11  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAV----------KCLKPDVLSQPEAMD-DFI 59
Query: 154 RCVQIRNWFDYRNHICIVFEKLGP------------SLYDFLRKNSYRSFPIDLVRELGR 201
           R V   +  D+RN I +    L P            SL D LRK+    F +  +     
Sbjct: 60  REVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGH-FLLGTLSRYAV 118
Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+ E + ++   R IH DL   N+LL + + VK+ D+  +          + LP++    
Sbjct: 119 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM----------RALPQN---- 164
Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
                   +  Q+H  V     + APE +    +++  D W  G  L E+
Sbjct: 165 -----DDHYVMQEHRKVPFA--WCAPESLKTRTFSHASDTWMFGVTLWEM 207

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 32/231 (13%)
Query: 97  LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCV 156
           + ++G G FG +V       K+ VAIK +R      E  + E +V+ +L+       + V
Sbjct: 13  VQEIGSGQFG-LVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSH-----PKLV 66
Query: 157 QIRNWFDYRNHICIVFEKLG-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           Q+      +  IC+V E +    L D+LR      F  + +  +   + E +A++ E  +
Sbjct: 67  QLYGVCLEQAPICLVTEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACV 125
Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DL   N L+   + +KV D+  ++R   D  Y  +      +K              
Sbjct: 126 IHRDLAARNCLVGENQVIKVSDFG-MTRFVLDDQYTSSTGTKFPVK-------------- 170
Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE 325
                   + +PEV     ++   D+WS G ++ E+ S G+  ++   N E
Sbjct: 171 --------WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE 213

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 21  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 80
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 81  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHR 136
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR     +Y         IK                 
Sbjct: 137 DLAARNCLVGENHLVKVADFG-LSRLMTGDTYTAPAGAKFPIK----------------- 178
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
                + APE +    ++   D+W+ G +L E+ +       G  L Q +E LE    ME
Sbjct: 179 -----WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME 233
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 234 RPEGCPEKVYELMRA 248

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 37/221 (16%)
Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           ++L  +G+G FG V+    + +   VA+K +++ +   +A + E  V+ +L RH    + 
Sbjct: 9   KLLQTIGKGEFGDVM--LGDYRGNKVAVKCIKN-DATAQAFLAEASVMTQL-RH----SN 60
Query: 155 CVQIRNWF-DYRNHICIVFEKLGP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            VQ+     + +  + IV E +   SL D+LR         D + +    + E++ ++  
Sbjct: 61  LVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEG 120
Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
              +H DL   N+L+      KV D+     +S      K LP                 
Sbjct: 121 NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGK-LPVK--------------- 164
Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                      + APE +    ++   D+WS G +L E+ S
Sbjct: 165 -----------WTAPEALREKKFSTKSDVWSFGILLWEIYS 194

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 34/244 (13%)
Query: 95  RILSKMGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHD 149
           +I   +G G FG+V         +++  VAIK +++   +K R   + E  ++ +    +
Sbjct: 17  KIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPN 76
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     + +         + I+ E +   SL  FLRKN  R   I LV  L R +   + 
Sbjct: 77  I-----IHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGML-RGIGSGMK 130
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++ ++  +H DL   NIL+ S    KV D+  +SR  +D        +   I +      
Sbjct: 131 YLSDMSYVHRDLAARNILVNSNLVCKVSDFG-MSRVLEDDPEAAYTTRGGKIPI------ 183
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHL 327
                          + APE I    +    D+WS G ++ E+ S GE  +    N + +
Sbjct: 184 --------------RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVI 229
Query: 328 AMME 331
             +E
Sbjct: 230 KAIE 233

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 34/244 (13%)
Query: 95  RILSKMGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHD 149
           +I   +G G FG+V         +++  VAIK +++   +K R   + E  ++ +    +
Sbjct: 11  KIEKVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPN 70
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     + +         + I+ E +   SL  FLRKN  R   I LV  L R +   + 
Sbjct: 71  I-----IHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGML-RGIGSGMK 124
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++ ++  +H DL   NIL+ S    KV D+  +SR  +D        +   I +      
Sbjct: 125 YLSDMSYVHRDLAARNILVNSNLVCKVSDFG-MSRVLEDDPEAAYTTRGGKIPI------ 177
Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHL 327
                          + APE I    +    D+WS G ++ E+ S GE  +    N + +
Sbjct: 178 --------------RWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVI 223
Query: 328 AMME 331
             +E
Sbjct: 224 KAIE 227

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G FG+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 18  KLGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 78  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 133
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR                   +  G T   H    + 
Sbjct: 134 DLAARNCLVGENHLVKVADFG-LSR-------------------LMTGDTXTAHAGAKFP 173
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
           +    + APE +    ++   D+W+ G +L E+ +       G    Q +E LE    ME
Sbjct: 174 IK---WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELLEKDYRME 230
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 231 RPEGCPEKVYELMRA 245

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 38/248 (15%)
Query: 95  RILSKMGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHD 149
           +I   +G G FG+V         +K+  VAIK ++     + R   + E  ++ +    +
Sbjct: 19  KIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPN 78
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     +++         + I+ E +   +L  FLR N  +   I LV  L R +   + 
Sbjct: 79  I-----IRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGML-RGIASGMR 132
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDY---KFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++ E+  +H DL   NIL+ S    KV D+   +FL  +S D +   +L     I+    
Sbjct: 133 YLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETSSLGGKIPIR---- 188
Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL 324
                             + APE I    +    D WS G ++ E+ S GE  +    N 
Sbjct: 189 ------------------WTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDMSNQ 230
Query: 325 EHLAMMER 332
           + +  +E+
Sbjct: 231 DVINAIEQ 238

>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In Complex With Adp Length = 432

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 135/362 (37%), Gaps = 85/362 (23%)
Query: 69  GSPPWRPDDKDGHY-VFAIGE-NLTPRYRILSKMGEGTFGQVV--ECFDNEKKELVAIKI 124
            SP    DD D    V  +G+ +  P+      +G G  G +V    FDN     VA+K 
Sbjct: 3   SSPSLEQDDGDEETSVVIVGKISFCPK----DVLGHGAEGTIVYRGMFDNRD---VAVK- 54
Query: 125 VRSINKYREAAMIEIDVLQRLARH-DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFL 183
            R + +    A  E+ +L+    H ++    C +    F Y     I  E    +L +++
Sbjct: 55  -RILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQY-----IAIELCAATLQEYV 108
Query: 184 RKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR 243
            +  +    ++ +  L +Q    +A +H L ++H DLKP NIL              +S 
Sbjct: 109 EQKDFAHLGLEPITLL-QQTTSGLAHLHSLNIVHRDLKPHNIL--------------ISM 153
Query: 244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVI---LGLGWNYPCD 300
            +  G     +      K +  G  +F  +  S V  T  + APE++         Y  D
Sbjct: 154 PNAHGKIKAMISDFGLCKKLAVGRHSFSRR--SGVPGTEGWIAPEMLSEDCKENPTYTVD 211
Query: 301 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD 360
           ++S GC+                               ++++        K  +R A + 
Sbjct: 212 IFSAGCVF------------------------------YYVISEGSHPFGKSLQRQANIL 241
Query: 361 WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP 420
              GA S D +              +H D  A +LI   + ++  DP +R  A+  L+HP
Sbjct: 242 L--GACSLDCLHP-----------EKHEDVIARELI---EKMIAMDPQKRPSAKHVLKHP 285
Query: 421 FF 422
           FF
Sbjct: 286 FF 287

>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From Mycobacterium Tuberculosis In Complex With Tetrahydrobenzothiophene Ax20017 Length = 681

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 38/162 (23%)
Query: 156 VQIRNWFDYRNHIC-----IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           VQI N+ ++ +        IV E +G      L+++  +  P+        ++L +++++
Sbjct: 142 VQIFNFVEHTDRHGDPVGYIVMEYVGGQ---SLKRSKGQKLPVAEAIAYLLEILPALSYL 198
Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H + L++ DLKPENI+L   +                            +KLID G+ + 
Sbjct: 199 HSIGLVYNDLKPENIMLTEEQ----------------------------LKLIDLGAVS- 229
Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC 312
                 Y+  T  ++APE++   G     D+++VG  L  L 
Sbjct: 230 RINSFGYLYGTPGFQAPEIVR-TGPTVATDIYTVGRTLAALT 270

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 117/304 (38%), Gaps = 69/304 (22%)
Query: 93  RYRILSKMGEGTFGQVVE-----CFDNEKKELVAIKIVRSINKYRE--AAMIEIDVLQRL 145
           +  +L ++G+G+FG V E         E +  VA+K V      RE    + E  V++  
Sbjct: 18  KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLR-------KNSYRSFP-IDLV 196
             H +     V++           +V E +    L  +LR        N  R  P +  +
Sbjct: 78  TCHHV-----VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM 132
Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
            ++  ++ + +A+++  + +H DL   N ++     VK+ D+  ++R   + +Y++   K
Sbjct: 133 IQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFG-MTRDIYETAYYRKGGK 191
Query: 257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GE 315
                                ++  R + APE +    +    D+WS G +L E+ S  E
Sbjct: 192 G--------------------LLPVR-WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAE 230
Query: 316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR--DSMRA 373
             +Q   N       E+VL                K+   G  LD PD    R  D MR 
Sbjct: 231 QPYQGLSN-------EQVL----------------KFVMDGGYLDQPDNCPERVTDLMRM 267
Query: 374 VWKL 377
            W+ 
Sbjct: 268 CWQF 271

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 32/232 (13%)
Query: 94  YRILSKMGEGTFGQVV---ECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQR-LARHD 149
           + +L  +G G +G+V    +   ++  +L A+K+++     ++A   E    +R +  H 
Sbjct: 56  FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHI 115
Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 V +   F     + ++ + + G  L+  L +     F    V+    +++ ++ 
Sbjct: 116 RQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALE 173
Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +H+L +I+ D+K ENILL S  +V + D+             K        +  DF  T
Sbjct: 174 HLHKLGIIYRDIKLENILLDSNGHVVLTDF----------GLSKEFVADETERAYDFCGT 223
Query: 269 TFEHQDHSYVVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELCSGEALF 318
                          Y AP+++ G   G +   D WS+G ++ EL +G + F
Sbjct: 224 I-------------EYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPF 262

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 94/247 (38%), Gaps = 56/247 (22%)
Query: 93  RYRILSKMGEGTFGQVVEC--FDNEKKEL---VAIKIVRSINKYRE--AAMIEIDVLQRL 145
           R  +   +G G FGQV+E   F  +K      VA+K+++    + E  A M E+ +L  +
Sbjct: 29  RLNLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 88
Query: 146 ARHDIGGTRCVQIRNWFDYRNH------ICIVFEKLGPSLYDFLR--KNSYRSF--PIDL 195
             H       + + N             + + F K G +L  +LR  +N +  +  P DL
Sbjct: 89  GHH-------LNVVNLLGACTKPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKTPEDL 140
Query: 196 VREL---------GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK 246
            ++            Q+ + + F+   + IH DL   NILL     VK+ D+       K
Sbjct: 141 YKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXK 200
Query: 247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGC 306
           D    +       +K                      + APE I    +    D+WS G 
Sbjct: 201 DPDXVRKGDARLPLK----------------------WMAPETIFDRVYTIQSDVWSFGV 238
Query: 307 ILVELCS 313
           +L E+ S
Sbjct: 239 LLWEIFS 245

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +    +I    
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI---- 108
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++         + IV E +   SL  FLRK+  +   I LV  L R +   + ++ ++
Sbjct: 109 -IRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGML-RGIASGMKYLSDM 166
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR  +D        +   I +           
Sbjct: 167 GFVHRDLAARNILINSNLVCKVSDFG-LSRVLEDDPEAAYTTRGGKIPI----------- 214
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + +PE I    +    D+WS G +L E+ S
Sbjct: 215 ---------RWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +    +I    
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI---- 108
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++         + IV E +   SL  FLRK+  +   I LV  L R +   + ++ ++
Sbjct: 109 -IRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGML-RGIASGMKYLSDM 166
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR  +D        +   I +           
Sbjct: 167 GAVHRDLAARNILINSNLVCKVSDFG-LSRVLEDDPEAAYTTRGGKIPI----------- 214
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + +PE I    +    D+WS G +L E+ S
Sbjct: 215 ---------RWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +    +I    
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI---- 108
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++         + IV E +   SL  FLRK+  +   I LV  L R +   + ++ ++
Sbjct: 109 -IRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGML-RGIASGMKYLSDM 166
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR  +D        +   I +           
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFG-LSRVLEDDPEAAYTTRGGKIPI----------- 214
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + +PE I    +    D+WS G +L E+ S
Sbjct: 215 ---------RWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 116/304 (38%), Gaps = 69/304 (22%)
Query: 93  RYRILSKMGEGTFGQVVE-----CFDNEKKELVAIKIVRSINKYRE--AAMIEIDVLQRL 145
           +  +L ++G+G+FG V E         E +  VA+K V      RE    + E  V++  
Sbjct: 18  KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLG-PSLYDFLR-------KNSYRSFP-IDLV 196
             H +     V++           +V E +    L  +LR        N  R  P +  +
Sbjct: 78  TCHHV-----VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEM 132
Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
            ++  ++ + +A+++  + +H DL   N ++     VK+ D+  ++R   +  Y++   K
Sbjct: 133 IQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFG-MTRDIYETDYYRKGGK 191
Query: 257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GE 315
                                ++  R + APE +    +    D+WS G +L E+ S  E
Sbjct: 192 G--------------------LLPVR-WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAE 230
Query: 316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR--DSMRA 373
             +Q   N       E+VL                K+   G  LD PD    R  D MR 
Sbjct: 231 QPYQGLSN-------EQVL----------------KFVMDGGYLDQPDNCPERVTDLMRM 267
Query: 374 VWKL 377
            W+ 
Sbjct: 268 CWQF 271

>pdb|2H34|A Chain A, Apoenzyme Crystal Structure Of The Tuberculosis SerineTHREONINE Kinase, Pkne Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 23/119 (19%)
Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           RQ+  ++   H     H D+KPENIL+ + ++  + D+   S ++ +             
Sbjct: 141 RQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDE------------- 187
Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
           KL   G+T          V T +Y APE        Y  D++++ C+L E  +G   +Q
Sbjct: 188 KLTQLGNT----------VGTLYYXAPERFSESHATYRADIYALTCVLYECLTGSPPYQ 236

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +    +I    
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI---- 108
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++         + IV E +   SL  FLRK+  +   I LV  L R +   + ++ ++
Sbjct: 109 -IRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGML-RGIASGMKYLSDM 166
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR  +D        +   I +           
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFG-LSRVLEDDPEAAYTTRGGKIPI----------- 214
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + +PE I    +    D+WS G +L E+ S
Sbjct: 215 ---------RWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +    +I    
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI---- 108
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++         + IV E +   SL  FLRK+  +   I LV  L R +   + ++ ++
Sbjct: 109 -IRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGML-RGIASGMKYLSDM 166
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR  +D        +   I +           
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFG-LSRVLEDDPEAAYTTRGGKIPI----------- 214
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + +PE I    +    D+WS G +L E+ S
Sbjct: 215 ---------RWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +    +I    
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI---- 108
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++         + IV E +   SL  FLRK+  +   I LV  L R +   + ++ ++
Sbjct: 109 -IRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGML-RGIASGMKYLSDM 166
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR  +D        +   I +           
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFG-LSRVLEDDPEAAYTTRGGKIPI----------- 214
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + +PE I    +    D+WS G +L E+ S
Sbjct: 215 ---------RWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 86/205 (41%), Gaps = 35/205 (17%)
Query: 132 REAAMIEIDVLQRLARHDIGGTRCVQI---RNWFDYRNHICIVFEKLGPSLYDFLRKNSY 188
           ++  + E +V+Q+L    I   R + I    +W      + +   +LGP L  +L++N  
Sbjct: 56  KDELLAEANVMQQLDNPYI--VRMIGICEAESWM-----LVMEMAELGP-LNKYLQQN-- 105
Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
           R      + EL  Q+   + ++ E   +H DL   N+LLV+  Y K+ D+        D 
Sbjct: 106 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 165
Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL 308
           + +K                    Q H        + APE I    ++   D+WS G ++
Sbjct: 166 NXYK-------------------AQTHG--KWPVKWYAPECINYYKFSSKSDVWSFGVLM 204
Query: 309 VELCS-GEALFQTHENLEHLAMMER 332
            E  S G+  ++  +  E  AM+E+
Sbjct: 205 WEAFSYGQKPYRGMKGSEVTAMLEK 229

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +    +I    
Sbjct: 53  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI---- 108
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++         + IV E +   SL  FLRK+  +   I LV  L R +   + ++ ++
Sbjct: 109 -IRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGML-RGIASGMKYLSDM 166
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR  +D        +   I +           
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFG-LSRVLEDDPEAAYTTRGGKIPI----------- 214
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + +PE I    +    D+WS G +L E+ S
Sbjct: 215 ---------RWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +    +I    
Sbjct: 51  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI---- 106
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++         + IV E +   SL  FLRK+  +   I LV  L R +   + ++ ++
Sbjct: 107 -IRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGML-RGIASGMKYLSDM 164
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR  +D        +   I +           
Sbjct: 165 GYVHRDLAARNILINSNLVCKVSDFG-LSRVLEDDPEAAYTTRGGKIPI----------- 212
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + +PE I    +    D+WS G +L E+ S
Sbjct: 213 ---------RWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 243

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 138/369 (37%), Gaps = 121/369 (32%)
Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--------------- 137
           +Y +  ++G+G++G V   ++       A+K++      R+A                  
Sbjct: 14  QYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGC 73
Query: 138 ------------EIDVLQRLARHDIGGTRCVQIRNWFDYRN--HICIVFEKL--GPSLYD 181
                       EI +L++L   ++     V++    D  N  H+ +VFE +  GP    
Sbjct: 74  IQPRGPIEQVYQEIAILKKLDHPNV-----VKLVEVLDDPNEDHLYMVFELVNQGP---- 124
Query: 182 FLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL 241
            +   + +    D  R   + L++ + ++H  ++IH D+KP N+L+              
Sbjct: 125 VMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLV-------------- 170
Query: 242 SRSSKDGSYFKNLPKSSAIKLIDFG-STTFEHQDH--SYVVSTRHYRAPEVIL---GLGW 295
               +DG           IK+ DFG S  F+  D   S  V T  + APE +     +  
Sbjct: 171 ---GEDGH----------IKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFS 217
Query: 296 NYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
               D+W++G  L     G+  F          M ER+       M + +  +++     
Sbjct: 218 GKALDVWAMGVTLYCFVFGQCPF----------MDERI-------MCLHSKIKSQA---- 256
Query: 356 GARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKARE 415
              L++PD                 P++        A DL DL+  +L  +P  R+   E
Sbjct: 257 ---LEFPDQ----------------PDI--------AEDLKDLITRMLDKNPESRIVVPE 289
Query: 416 ALRHPFFTR 424
              HP+ TR
Sbjct: 290 IKLHPWVTR 298

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +    +I    
Sbjct: 24  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI---- 79
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++         + IV E +   SL  FLRK+  +   I LV  L R +   + ++ ++
Sbjct: 80  -IRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGML-RGIASGMKYLSDM 137
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR  +D        +   I +           
Sbjct: 138 GYVHRDLAARNILINSNLVCKVSDFG-LSRVLEDDPEAAYTTRGGKIPI----------- 185
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + +PE I    +    D+WS G +L E+ S
Sbjct: 186 ---------RWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 216

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++     V  
Sbjct: 18  KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHT 218
           R   +   +I   F   G +L D+LR+ + +     ++  +  Q+  ++ ++ +   IH 
Sbjct: 78  R---EPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR 133
Query: 219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYV 278
           DL   N L+     VKV D+  LSR                   +  G T   H    + 
Sbjct: 134 DLAARNCLVGENHLVKVADFG-LSR-------------------LMTGDTFTAHAGAKFP 173
Query: 279 VSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-------GEALFQTHENLEHLAMME 331
           +    + APE +    ++   D+W+ G +L E+ +       G    Q +E LE    ME
Sbjct: 174 IK---WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDPSQVYELLEKDYRME 230
Query: 332 RVLG-PLPHHMVIRA 345
           R  G P   + ++RA
Sbjct: 231 RPEGCPEKVYELMRA 245

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 100 MGEGTFGQVVEC---FDNEKKELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTR 154
           +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +    +I    
Sbjct: 41  VGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI---- 96
Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            +++         + IV E +   SL  FLRK+  +   I LV  L R +   + ++ ++
Sbjct: 97  -IRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGML-RGIASGMKYLSDM 154
Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   NIL+ S    KV D+  LSR  +D        +   I +           
Sbjct: 155 GYVHRDLAARNILINSNLVCKVSDFG-LSRVLEDDPEAAYTTRGGKIPI----------- 202
Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                     + +PE I    +    D+WS G +L E+ S
Sbjct: 203 ---------RWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	433
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	0.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	1e-180
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	1e-178
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	1e-152
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	1e-150
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	1e-141
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	1e-115
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	6e-55
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	6e-54
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-51
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	5e-51
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-50
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-50
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-50
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	2e-49
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-49
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	4e-49
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-48
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-48
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-47
3niz_A	311	Rhodanese family protein; structural genomics, str	6e-47
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	7e-47
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-46
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	5e-46
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	5e-46
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	6e-46
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-45
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-45
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	3e-45
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-43
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	4e-43
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	5e-43
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	1e-42
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-42
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	4e-42
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-41
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	3e-41
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	7e-41
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	8e-41
2a19_B	284	Interferon-induced, double-stranded RNA-activated	8e-41
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	8e-41
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	9e-41
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-40
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-40
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-40
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-40
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-40
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-40
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	4e-40
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	4e-40
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-40
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	7e-40
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-39
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	2e-39
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-39
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-39
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-39
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	4e-39
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	5e-39
3rp9_A	458	Mitogen-activated protein kinase; structural genom	6e-39
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	9e-39
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-38
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-38
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-38
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-38
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-38
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	3e-38
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-38
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	4e-38
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-38
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	1e-37
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	1e-37
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-37
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-37
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-37
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	5e-37
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	5e-37
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	5e-37
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	6e-37
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-36
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-36
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	3e-36
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	3e-36
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	5e-36
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-35
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-35
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	3e-35
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-34
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	3e-34
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-34
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-33
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-33
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-33
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	9e-33
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-32
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-31
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-31
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-31
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	5e-31
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	4e-30
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	4e-29
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	7e-29
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-28
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	4e-28
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-27
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	7e-27
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-26
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	7e-25
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-24
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-24
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-24
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	4e-24
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	4e-24
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-24
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-23
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	1e-23
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	2e-23
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	2e-23
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-22
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-22
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-22
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	3e-22
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-22
3fme_A	290	Dual specificity mitogen-activated protein kinase;	5e-22
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	6e-22
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-21
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-21
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-21
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-21
3aln_A	327	Dual specificity mitogen-activated protein kinase;	3e-21
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	5e-21
3an0_A	340	Dual specificity mitogen-activated protein kinase;	8e-21
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	8e-21
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	1e-20
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-20
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-20
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	2e-20
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	6e-20
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	7e-20
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	8e-20
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	8e-20
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-19
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-19
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	2e-19
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-19
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	3e-19
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	8e-19
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	3e-18
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	4e-18
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	5e-18
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	9e-18
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-17
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-17
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	1e-17
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	1e-17
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	2e-17
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	3e-17
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	5e-17
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	1e-16
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-16
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	1e-16
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-16
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	2e-16
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	2e-16
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	3e-16
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	6e-16
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	7e-16
3q4u_A	301	Activin receptor type-1; structural genomics conso	8e-16
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-15
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-15
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-15
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	4e-15
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	5e-15
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	7e-15
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	9e-15
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-14
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-14
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-14
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-13
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-13
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	3e-13
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	4e-13
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-12
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-12
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-12
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	6e-12
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	8e-12
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-11
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	3e-11
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	4e-11
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-10
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-10
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-10
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-10
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-10
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	3e-10
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-10
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-10
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	8e-10
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-09
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-09
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-09
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-09
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-09
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-09
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	3e-09
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-09
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	8e-09
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	9e-09
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-08
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-08
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-08
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	2e-08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	3e-08
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	6e-08
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	1e-07
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	4e-07
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	6e-07
3pls_A	298	Macrophage-stimulating protein receptor; protein k	8e-07
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	1e-06
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-06
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	1e-06
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-06
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	4e-06
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	5e-06
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-05
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	5e-05
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	1e-04
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	2e-04
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-04
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	6e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	8e-04

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score =  533 bits (1375), Expect = 0.0
 Identities = 134/359 (37%), Positives = 210/359 (58%), Gaps = 10/359 (2%)

Query: 66  PRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV 125
               +  ++ DD+  H+ +  G  L   + ++ KMG+GTFG+V+ C   + K+  A+K+V
Sbjct: 9   SGRENLYFQGDDEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVV 68

Query: 126 RSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
           R+I KY  +A IE D+L+++   DI     V+    F Y +H+C++FE LGPSLY+ + +
Sbjct: 69  RNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPLGPSLYEIITR 128

Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
           N+Y  F I+ ++    ++L+++ ++ ++ L HTDLKPENILL    + K           
Sbjct: 129 NNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDG 188

Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
           K    ++   KS+ IKLIDFG  TF+   H  +++TR YRAPEVIL LGW+   D+WS G
Sbjct: 189 KKIQIYR--TKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFG 246

Query: 306 CILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRR-AEKYFRRGA-RLDWPD 363
           C+L EL +G  LF+THE++EHLAMME ++ P+P +M+  A +    KY  +   +L WP+
Sbjct: 247 CVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPE 306

Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
            A+S +S++ V K L L  +I   +        D L  +L+ DP  R    E L+H F 
Sbjct: 307 NASSINSIKHVKKCLPLYKIIKHEL------FCDFLYSILQIDPTLRPSPAELLKHKFL 359

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score =  506 bits (1304), Expect = e-180
 Identities = 159/347 (45%), Positives = 226/347 (65%), Gaps = 16/347 (4%)

Query: 80  GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNE-KKELVAIKIVRSINKYREAAMIE 138
            H +   G+ L+ RY I+  +GEG FG+VVEC D++     VA+KIV+++++Y EAA  E
Sbjct: 2   MHLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSE 61

Query: 139 IDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVR 197
           I VL+ L   D   T RCVQ+  WF++  HICIVFE LG S YDF+++N +  F +D +R
Sbjct: 62  IQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIR 121

Query: 198 ELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKS 257
           ++  Q+ +SV F+H  +L HTDLKPENIL V ++Y +  + K            +    +
Sbjct: 122 KMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRD--------ERTLIN 173

Query: 258 SAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
             IK++DFGS T++ + HS +VSTRHYRAPEVIL LGW+ PCD+WS+GCIL+E   G  +
Sbjct: 174 PDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTV 233

Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
           F TH++ EHLAMMER+LGPLP HM+ +  +R  KYF    RLDW + +++   +    K 
Sbjct: 234 FPTHDSKEHLAMMERILGPLPKHMIQKTRKR--KYFHHD-RLDWDEHSSAGRYVSRACKP 290

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           L+   ++ Q V+H    L DL+Q +L YDPA+R+  REAL+HPFF  
Sbjct: 291 LK-EFMLSQDVEHER--LFDLIQKMLEYDPAKRITLREALKHPFFDL 334

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score =  499 bits (1288), Expect = e-178
 Identities = 155/351 (44%), Positives = 232/351 (66%), Gaps = 16/351 (4%)

Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSINKYREA 134
           DDK+GH V  IG+ L  RY I+  +GEGTFG+VVEC D+ + K  VA+KI+R++ KYREA
Sbjct: 3   DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREA 62

Query: 135 AMIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI 193
           A +EI+VL+++   D      CV + +WF++  H+CI FE LG + ++FL++N+++ +P+
Sbjct: 63  ARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPL 122

Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
             VR +  QL  ++ F+HE +L HTDLKPENIL V++E+  + +           S  + 
Sbjct: 123 PHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEH--------KSCEEK 174

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
             K+++I++ DFGS TF+H+ H+ +V+TRHYR PEVIL LGW  PCD+WS+GCIL E   
Sbjct: 175 SVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYR 234

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G  LFQTHEN EHL MME++LGP+P HM+ R  ++  KYF +G  L W + ++    ++ 
Sbjct: 235 GFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQ--KYFYKG-GLVWDENSSDGRYVKE 291

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             K L+   ++   ++H    L DL++ +L +DPA+R+   EAL HPFF  
Sbjct: 292 NCKPLK-SYMLQDSLEHV--QLFDLMRRMLEFDPAQRITLAEALLHPFFAG 339

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score =  438 bits (1128), Expect = e-152
 Identities = 120/360 (33%), Positives = 187/360 (51%), Gaps = 37/360 (10%)

Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA 135
           DD  G YV    +++  RY +L  +G+G+FGQVV+ +D++  + VA+K+VR+  ++   A
Sbjct: 81  DDDQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQA 140

Query: 136 MIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPID 194
             EI +L+ L + D   T   + +   F +RNHIC+ FE L  +LY+ ++KN ++ F + 
Sbjct: 141 AEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLP 200

Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
           LVR+    +L+ +  +H+ R+IH DLKPENILL                           
Sbjct: 201 LVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQ------------------------- 235

Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
              S IK+IDFGS+ +EHQ     + +R YRAPEVILG  +  P D+WS+GCIL EL +G
Sbjct: 236 QGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTG 295

Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDW------PDGATSR 368
             L    +  + LA M  +LG     + + A +RA+ +        +       DG+   
Sbjct: 296 YPLLPGEDEGDQLACMIELLGMPSQKL-LDASKRAKNFVSSKGYPRYCTVTTLSDGSVVL 354

Query: 369 DSMRAVWKLLRLPNLIMQHVDHSAG----DLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           +  R+    LR P    +  +   G      +D L+  L +DPA R+   +ALRHP+  R
Sbjct: 355 NGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRR 414

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score =  429 bits (1105), Expect = e-150
 Identities = 120/369 (32%), Positives = 187/369 (50%), Gaps = 44/369 (11%)

Query: 76  DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAA 135
           DD +  Y+   GE    RY I S +G+G+FGQVV+ +D  ++E VAIKI+++   +   A
Sbjct: 38  DDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQA 97

Query: 136 MIEIDVLQRLARHDIGGT-RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPID 194
            IE+ +L+ + +HD       V ++  F +RNH+C+VFE L  +LYD LR  ++R   ++
Sbjct: 98  QIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLN 157

Query: 195 LVRELGRQLLESVAFMH--ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK 252
           L R+  +Q+  ++ F+   EL +IH DLKPENILL +                       
Sbjct: 158 LTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCN----------------------- 194

Query: 253 NLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC 312
             PK SAIK++DFGS+    Q     + +R YR+PEV+LG+ ++   D+WS+GCILVE+ 
Sbjct: 195 --PKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMH 252

Query: 313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
           +GE LF     ++ +  +  VLG  P H+ +    +A K+F +     W    T      
Sbjct: 253 TGEPLFSGANEVDQMNKIVEVLGIPPAHI-LDQAPKARKFFEKLPDGTWNLKKTKDGKRE 311

Query: 373 AVWKLLR-LPNLIMQHVDHSAG--------------DLIDLLQGLLRYDPAERLKAREAL 417
                 R L N++        G                 DL+  +L YDP  R++   AL
Sbjct: 312 YKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYAL 371

Query: 418 RHPFFTRDV 426
           +H FF +  
Sbjct: 372 QHSFFKKTA 380

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score =  406 bits (1046), Expect = e-141
 Identities = 100/367 (27%), Positives = 169/367 (46%), Gaps = 47/367 (12%)

Query: 76  DDKDGHYVFAIGENLT-PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA 134
               G++    GE     RY ++ K+G G F  V    D      VA+KIVR    Y EA
Sbjct: 2   YRPGGYHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEA 61

Query: 135 AMIEIDVLQRLARHD------IGGTRCVQIRNWFDYRN----HICIVFEKLGPSLYDFLR 184
           A  EI +LQR+   D      +G    +++ + F+++     H+ +VFE LG +L   ++
Sbjct: 62  AEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIK 121

Query: 185 KNSYRSFPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSR 243
           K  +R  P+  V+++ +QLL  + +MH    +IHTD+KPEN+L+   +  +         
Sbjct: 122 KYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPE--------- 172

Query: 244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWS 303
                           IK+ D G+  +  + ++  + TR YR+PEV+LG  W    D+WS
Sbjct: 173 ------------NLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWS 220

Query: 304 VGCILVELCSGEALFQTHE------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGA 357
             C++ EL +G+ LF+  E      + +H+A +  +LG LP ++ +R  +    +F    
Sbjct: 221 TACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYL-LRNGKYTRTFFNS-- 277

Query: 358 RLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREAL 417
                 G     S    W L  +     +     A ++ D L  +L+ DP +R  A   +
Sbjct: 278 -----RGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLV 332

Query: 418 RHPFFTR 424
            HP+   
Sbjct: 333 NHPWLKD 339

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score =  342 bits (878), Expect = e-115
 Identities = 106/390 (27%), Positives = 185/390 (47%), Gaps = 50/390 (12%)

Query: 72  PWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY 131
                 K G+++  IG+    RY ++ K+G G F  V   +D + K+ VA+K+V+S   Y
Sbjct: 17  DPNDYCKGGYHLVKIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHY 76

Query: 132 REAAMIEIDVLQRLARHDI---GGTRCVQIRNWFDYR----NHICIVFEKLGPSLYDFLR 184
            E A+ EI +L+ +   D         VQ+ + F        HIC+VFE LG  L  ++ 
Sbjct: 77  TETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWII 136

Query: 185 KNSYRSFPIDLVRELGRQLLESVAFMH-ELRLIHTDLKPENILLVSAEY------VKVPD 237
           K++Y+  P+  V+++ +Q+L+ + ++H + R+IHTD+KPENILL   E        +  +
Sbjct: 137 KSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATE 196

Query: 238 YKFLSRSSKDGSYFKNLP----------------KSSAIKLIDFGSTTFEHQDHSYVVST 281
           ++        GS     P                +   +K+ D G+  + H+  +  + T
Sbjct: 197 WQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQT 256

Query: 282 RHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE------HLAMMERVLG 335
           R YR+ EV++G G+N P D+WS  C+  EL +G+ LF+ H   E      H+A++  +LG
Sbjct: 257 RQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLG 316

Query: 336 PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD- 394
            +P  +++      E + ++G                   K   L  ++++  + S  + 
Sbjct: 317 KVPRKLIVAGKYSKEFFTKKGDLKHITKL-----------KPWGLFEVLVEKYEWSQEEA 365

Query: 395 --LIDLLQGLLRYDPAERLKAREALRHPFF 422
               D L  +L   P +R  A E LRHP+ 
Sbjct: 366 AGFTDFLLPMLELIPEKRATAAECLRHPWL 395

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score =  184 bits (469), Expect = 6e-55
 Identities = 88/355 (24%), Positives = 145/355 (40%), Gaps = 75/355 (21%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA----AMIEIDVLQRLARH 148
           +Y  L  +GEG++G V++C + +   +VAIK     +   +     AM EI +L++L RH
Sbjct: 26  KYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFL-ESDDDKMVKKIAMREIKLLKQL-RH 83

Query: 149 D-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           + +     V +      +    +VFE +  ++ D L           +V++   Q++  +
Sbjct: 84  ENL-----VNLLEVCKKKKRWYLVFEFVDHTILDDLELFP-NGLDYQVVQKYLFQIINGI 137

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            F H   +IH D+KPENIL+                 S+ G           +KL DFG 
Sbjct: 138 GFCHSHNIIHRDIKPENILV-----------------SQSGV----------VKLCDFGF 170

Query: 267 STTFEHQDHSY--VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTHE 322
           + T       Y   V+TR YRAPE+++G    Y    D+W++GC++ E+  GE LF    
Sbjct: 171 ARTLAAPGEVYDDEVATRWYRAPELLVG-DVKYGKAVDVWAIGCLVTEMFMGEPLFPGDS 229

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP- 381
           +++ L  +   LG L                             +       +  +RLP 
Sbjct: 230 DIDQLYHIMMCLGNLIPR-------------------HQELFNKNPV-----FAGVRLPE 265

Query: 382 ----NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
                 + +     +  +IDL +  L  DP +R    E L H FF  D     F 
Sbjct: 266 IKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMDGFAERFS 320

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score =  181 bits (461), Expect = 6e-54
 Identities = 89/347 (25%), Positives = 154/347 (44%), Gaps = 77/347 (22%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA----AMIEIDVLQRLARH 148
           +Y  + K+GEG++G V +C + +  ++VAIK     ++        A+ EI +L++L +H
Sbjct: 4   KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFL-ESEDDPVIKKIALREIRMLKQL-KH 61

Query: 149 D-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             +     V +   F  +  + +VFE    ++   L +   R  P  LV+ +  Q L++V
Sbjct: 62  PNL-----VNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQ-RGVPEHLVKSITWQTLQAV 115

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            F H+   IH D+KPENIL+                 +K             IKL DFG 
Sbjct: 116 NFCHKHNCIHRDVKPENILI-----------------TKHSV----------IKLCDFGF 148

Query: 267 STTFEHQDHSY--VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTHE 322
           +         Y   V+TR YR+PE+++G    Y  P D+W++GC+  EL SG  L+    
Sbjct: 149 ARLLTGPSDYYDDEVATRWYRSPELLVG-DTQYGPPVDVWAIGCVFAELLSGVPLWPGKS 207

Query: 323 NLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           +++ L ++ + LG  +P H                        +T++      +  +++P
Sbjct: 208 DVDQLYLIRKTLGDLIPRH--------------------QQVFSTNQY-----FSGVKIP 242

Query: 382 -----NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                  +     + +   + LL+G L  DP ERL   + L HP+F 
Sbjct: 243 DPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFE 289

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score =  174 bits (444), Expect = 2e-51
 Identities = 78/352 (22%), Positives = 137/352 (38%), Gaps = 100/352 (28%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHD 149
            Y IL ++G G   +V +   NEKK++ AIK V    + N+  ++   EI  L +L +  
Sbjct: 29  IYSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL-QQ- 85

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
               + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+V  
Sbjct: 86  -HSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHT 142

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-ST 268
           +H+  ++H+DLKP N L+V                  DG           +KLIDFG + 
Sbjct: 143 IHQHGIVHSDLKPANFLIV------------------DGM----------LKLIDFGIAN 174

Query: 269 TFEHQDHSYVVSTR----HYRAPEVILGLGW-----------NYPCDLWSVGCILVELCS 313
             +    S V  ++    +Y  PE I  +             +   D+WS+GCIL  +  
Sbjct: 175 QMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY 234

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G+  FQ   N   ++ +  ++ P                      +++PD          
Sbjct: 235 GKTPFQQIIN--QISKLHAIIDP-------------------NHEIEFPDIPEK------ 267

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                               DL D+L+  L+ DP +R+   E L HP+    
Sbjct: 268 --------------------DLQDVLKCCLKRDPKQRISIPELLAHPYVQIQ 299

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score =  173 bits (441), Expect = 5e-51
 Identities = 85/351 (24%), Positives = 139/351 (39%), Gaps = 75/351 (21%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA-------AMIEIDVLQRL 145
           RY  ++++G G +G V +  D      VA+K VR +              + E+ +L+RL
Sbjct: 10  RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVR-VPNGGGGGGGLPISTVREVALLRRL 68

Query: 146 --ARHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
               H  +     V   +  D    + +VFE +   L  +L K      P + +++L RQ
Sbjct: 69  EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQ 128

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
            L  + F+H   ++H DLKPENIL+                 +  G           +KL
Sbjct: 129 FLRGLDFLHANCIVHRDLKPENILV-----------------TSGG----------TVKL 161

Query: 263 IDFG-------STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
            DFG                  VV T  YRAPEV+L   +  P D+WSVGCI  E+   +
Sbjct: 162 ADFGLARIYSYQMALTPV----VV-TLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRK 216

Query: 316 ALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            LF  +   + L  +  ++G P                       DWP   +        
Sbjct: 217 PLFCGNSEADQLGKIFDLIGLPPED--------------------DWPRDVSLPRGAFPP 256

Query: 375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                + +++   ++ S      LL  +L ++P +R+ A  AL+H +  +D
Sbjct: 257 RGPRPVQSVV-PEMEESG---AQLLLEMLTFNPHKRISAFRALQHSYLHKD 303

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score =  175 bits (446), Expect = 1e-50
 Identities = 95/382 (24%), Positives = 149/382 (39%), Gaps = 86/382 (22%)

Query: 66  PRTGSPPWRPDDKDGHYVFAI--------GENLTPRYRILSKMGEGTFGQVVECFDNEKK 117
           P          DKDG  V  +               Y     +G G+FG V +    +  
Sbjct: 20  PSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSG 79

Query: 118 ELVAIKIVRSINKY--REAAMIEIDVLQRLARHDIGGTRCVQIRNWF------DYRNHIC 169
           ELVAIK V    ++  RE     + ++++L  H       V++R +F          ++ 
Sbjct: 80  ELVAIKKVLQDKRFKNRE-----LQIMRKL-DHC----NIVRLRYFFYSSGEKKDEVYLN 129

Query: 170 IVFEKLGPSLYDFLR--KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILL 227
           +V + +  ++Y   R    + ++ P+  V+    QL  S+A++H   + H D+KP+N+LL
Sbjct: 130 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLL 189

Query: 228 VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-TFEHQDH--SYVVSTRHY 284
                                    + P ++ +KL DFGS       +   SY+  +R+Y
Sbjct: 190 -------------------------D-PDTAVLKLCDFGSAKQLVRGEPNVSYIC-SRYY 222

Query: 285 RAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMV 342
           RAPE+I G   +Y    D+WS GC+L EL  G+ +F     ++ L  + +VLG  P    
Sbjct: 223 RAPELIFGAT-DYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGT-PTREQ 280

Query: 343 IRA--DRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ 400
           IR       E  F +                    K      +        A   I L  
Sbjct: 281 IREMNPNYTEFKFPQ-------------------IKAHPWTKVFRPRTPPEA---IALCS 318

Query: 401 GLLRYDPAERLKAREALRHPFF 422
            LL Y P  RL   EA  H FF
Sbjct: 319 RLLEYTPTARLTPLEACAHSFF 340

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score =  172 bits (438), Expect = 2e-50
 Identities = 78/354 (22%), Positives = 137/354 (38%), Gaps = 100/354 (28%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHD 149
            Y IL ++G G   +V +   NEKK++ AIK V    + N+  ++   EI  L +L +  
Sbjct: 10  IYSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL-QQ- 66

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
               + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+V  
Sbjct: 67  -HSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHT 123

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-ST 268
           +H+  ++H+DLKP N L+V                  DG           +KLIDFG + 
Sbjct: 124 IHQHGIVHSDLKPANFLIV------------------DGM----------LKLIDFGIAN 155

Query: 269 TFEHQDHSYVVSTR----HYRAPEVILGLG-----------WNYPCDLWSVGCILVELCS 313
             +    S V  ++    +Y  PE I  +             +   D+WS+GCIL  +  
Sbjct: 156 QMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY 215

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G+  FQ   N   ++ +  ++ P                      +++PD          
Sbjct: 216 GKTPFQQIIN--QISKLHAIIDP-------------------NHEIEFPDIPEK------ 248

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR 427
                               DL D+L+  L+ DP +R+   E L HP+      
Sbjct: 249 --------------------DLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH 282

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score =  170 bits (432), Expect = 2e-49
 Identities = 82/345 (23%), Positives = 144/345 (41%), Gaps = 65/345 (18%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH 148
                Y+++ K+G G + +V E  +    E V +KI++ + K +     EI +L+ L   
Sbjct: 33  GNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKK--IKREIKILENLRGG 90

Query: 149 D--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
              I     V+            +VFE +  +  DF  K  Y++     +R    ++L++
Sbjct: 91  PNIITLADIVKDPVSRTP----ALVFEHVNNT--DF--KQLYQTLTDYDIRFYMYEILKA 142

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + + H + ++H D+KP N+++                            +   ++LID+G
Sbjct: 143 LDYCHSMGIMHRDVKPHNVMID--------------------------HEHRKLRLIDWG 176

Query: 267 STTFEHQDHSYV--VSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSG-EALFQTHE 322
              F H    Y   V++R+++ PE+++    ++Y  D+WS+GC+L  +    E  F  H+
Sbjct: 177 LAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHD 236

Query: 323 NLEHLAMMERVLGP-----LPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
           N + L  + +VLG            I  D R      R +R  W                
Sbjct: 237 NYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWER-------------- 282

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             + +     V   A   +D L  LLRYD   RL AREA+ HP+F
Sbjct: 283 -FVHSENQHLVSPEA---LDFLDKLLRYDHQSRLTAREAMEHPYF 323

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score =  171 bits (435), Expect = 3e-49
 Identities = 96/353 (27%), Positives = 150/353 (42%), Gaps = 79/353 (22%)

Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY--REAAMIEIDVLQR 144
           GE     Y     +G G+FG V +    E  E VAIK V    ++  RE     + +++ 
Sbjct: 35  GEQREIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKRFKNRE-----LQIMRI 88

Query: 145 LARHDIGGTRCVQIRNWF------DYRNHICIVFEKLGPSLYDFLR--KNSYRSFPIDLV 196
           + +H       V ++ +F           + +V E +  ++Y   R      ++ P+ L+
Sbjct: 89  V-KHP----NVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLI 143

Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
           +    QLL S+A++H + + H D+KP+N+LL                         + P 
Sbjct: 144 KLYMYQLLRSLAYIHSIGICHRDIKPQNLLL-------------------------D-PP 177

Query: 257 SSAIKLIDFGS--TTFEHQDH-SYVVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVEL 311
           S  +KLIDFGS       + + SY+  +R+YRAPE+I G   NY    D+WS GC++ EL
Sbjct: 178 SGVLKLIDFGSAKILIAGEPNVSYIC-SRYYRAPELIFG-ATNYTTNIDIWSTGCVMAEL 235

Query: 312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRAD--RRAEKYFRRGARLDWPDGATSRD 369
             G+ LF     ++ L  + +VLG  P    I+       E  F +              
Sbjct: 236 MQGQPLFPGESGIDQLVEIIKVLGT-PSREQIKTMNPNYMEHKFPQ-------------- 280

Query: 370 SMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                 +      +        A   IDL+  LL Y P+ RL A EAL HPFF
Sbjct: 281 -----IRPHPFSKVFRPRTPPDA---IDLISRLLEYTPSARLTAIEALCHPFF 325

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score =  169 bits (430), Expect = 4e-49
 Identities = 86/344 (25%), Positives = 150/344 (43%), Gaps = 68/344 (19%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE----AAMIEIDVLQRLARH 148
           RYR ++K+GEGT+G+V +  D    E VAIK +R +    E     A+ E+ +L+ L +H
Sbjct: 35  RYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIR-LEHEEEGVPGTAIREVSLLKEL-QH 92

Query: 149 D-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             I     +++++   + + + ++FE     L  ++  +      + +++    QL+  V
Sbjct: 93  RNI-----IELKSVIHHNHRLHLIFEYAENDLKKYM--DKNPDVSMRVIKSFLYQLINGV 145

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            F H  R +H DLKP+N+LL              S +S+             +K+ DFG 
Sbjct: 146 NFCHSRRCLHRDLKPQNLLLSV------------SDASETP----------VLKIGDFGL 183

Query: 267 --STTFEHQDHSYVVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTHE 322
             +     +  ++ + T  YR PE++LG   +Y    D+WS+ CI  E+     LF    
Sbjct: 184 ARAFGIPIRQFTHEIITLWYRPPEILLG-SRHYSTSVDIWSIACIWAEMLMKTPLFPGDS 242

Query: 323 NLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD--SMRAVWKLLR 379
            ++ L  +  VLG P                        WP      D       ++   
Sbjct: 243 EIDQLFKIFEVLGLPDDT--------------------TWPGVTALPDWKQSFPKFRGKT 282

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
           L  ++   +D      +DLL  +L  DP +R+ A+ AL HP+F+
Sbjct: 283 LKRVLGALLDDEG---LDLLTAMLEMDPVKRISAKNALEHPYFS 323

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score =  168 bits (428), Expect = 2e-48
 Identities = 78/354 (22%), Positives = 137/354 (38%), Gaps = 100/354 (28%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHD 149
            Y IL ++G G   +V +   NEKK++ AIK V    + N+  ++   EI  L +L +  
Sbjct: 57  IYSILKQIGSGGSSKVFQVL-NEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL-QQ- 113

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
               + +++ ++     +I +V E     L  +L+K   +S      +   + +LE+V  
Sbjct: 114 -HSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHT 170

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-ST 268
           +H+  ++H+DLKP N L+V                  DG           +KLIDFG + 
Sbjct: 171 IHQHGIVHSDLKPANFLIV------------------DGM----------LKLIDFGIAN 202

Query: 269 TFEHQDHSYVVSTR----HYRAPEVILGLGWN-----------YPCDLWSVGCILVELCS 313
             +    S V  ++    +Y  PE I  +  +              D+WS+GCIL  +  
Sbjct: 203 QMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY 262

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G+  FQ   N   ++ +  ++ P                      +++PD          
Sbjct: 263 GKTPFQQIIN--QISKLHAIIDP-------------------NHEIEFPDIPEK------ 295

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR 427
                               DL D+L+  L+ DP +R+   E L HP+      
Sbjct: 296 --------------------DLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH 329

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score =  166 bits (424), Expect = 2e-48
 Identities = 90/346 (26%), Positives = 140/346 (40%), Gaps = 71/346 (20%)

Query: 93  RYRILSKMGEGTFGQVVECFD-NEKKELVAIKIVRSINKYRE----AAMIEIDVLQRL-- 145
           +Y  ++++GEG +G+V +  D       VA+K VR +    E    + + E+ VL+ L  
Sbjct: 12  QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVR-VQTGEEGMPLSTIREVAVLRHLET 70

Query: 146 ARHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
             H  +     V   +  D    + +VFE +   L  +L K      P + ++++  QLL
Sbjct: 71  FEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLL 130

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + F+H  R++H DLKP+NIL+                 +  G           IKL D
Sbjct: 131 RGLDFLHSHRVVHRDLKPQNILV-----------------TSSG----------QIKLAD 163

Query: 265 FG-------STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
           FG                  VV T  YRAPEV+L   +  P DLWSVGCI  E+   + L
Sbjct: 164 FGLARIYSFQMALTSV----VV-TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPL 218

Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
           F+   +++ L  +  V+G  P                      WP               
Sbjct: 219 FRGSSDVDQLGKILDVIGL-PGEED------------------WPRDVALPRQAFHSKSA 259

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
             +   +   +D       DLL   L ++PA+R+ A  AL HP+F 
Sbjct: 260 QPIEKFV-TDIDELG---KDLLLKCLTFNPAKRISAYSALSHPYFQ 301

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score =  162 bits (413), Expect = 4e-47
 Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 76/345 (22%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE----AAMIEIDVLQRLARH 148
           +Y  L K+GEGT+G V +  +N   E  A+K +R + K  E      + EI +L+ L +H
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIR-LEKEDEGIPSTTIREISILKEL-KH 59

Query: 149 D-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             I     V++ +    +  + +VFE L   L   L             +    QLL  +
Sbjct: 60  SNI-----VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGI 113

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
           A+ H+ R++H DLKP+N+L+                 +++G           +K+ DFG 
Sbjct: 114 AYCHDRRVLHRDLKPQNLLI-----------------NREG----------ELKIADFGL 146

Query: 267 STTFEHQDHSY---VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTH 321
           +  F      Y   +V T  YRAP+V++G    Y    D+WSVGCI  E+ +G  LF   
Sbjct: 147 ARAFGIPVRKYTHEIV-TLWYRAPDVLMG-SKKYSTTIDIWSVGCIFAEMVNGTPLFPGV 204

Query: 322 ENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD--SMRAVWKLL 378
              + L  + R+LG P                       +WP+            V++  
Sbjct: 205 SEADQLMRIFRILGTPNSK--------------------NWPNVTELPKYDPNFTVYE-- 242

Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
             P      +       IDLL  +L+ DP +R+ A++AL H +F 
Sbjct: 243 --PLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFK 285

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score =  162 bits (413), Expect = 6e-47
 Identities = 96/347 (27%), Positives = 151/347 (43%), Gaps = 79/347 (22%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE----AAMIEIDVLQRLARH 148
           +Y+ L K+GEGT+G V +  D+ +  +VA+K +R ++   E     A+ EI +L+ L  H
Sbjct: 22  KYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIR-LDAEDEGIPSTAIREISLLKEL-HH 78

Query: 149 D-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             I     V + +       + +VFE +   L   L +N         ++    QLL  V
Sbjct: 79  PNI-----VSLIDVIHSERCLTLVFEFMEKDLKKVLDENK-TGLQDSQIKIYLYQLLRGV 132

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
           A  H+ R++H DLKP+N+L+                 + DG+          +KL DFG 
Sbjct: 133 AHCHQHRILHRDLKPQNLLI-----------------NSDGA----------LKLADFGL 165

Query: 267 STTFEHQDHSY---VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTH 321
           +  F     SY   VV T  YRAP+V++G    Y    D+WS+GCI  E+ +G+ LF   
Sbjct: 166 ARAFGIPVRSYTHEVV-TLWYRAPDVLMG-SKKYSTSVDIWSIGCIFAEMITGKPLFPGV 223

Query: 322 ENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
            + + L  +  +LG P P                     +WP            WK    
Sbjct: 224 TDDDQLPKIFSILGTPNPR--------------------EWPQVQELPL-----WKQRTF 258

Query: 381 P----NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                      +     + IDLL  +L +DP +R+ AR+A+ HP+F 
Sbjct: 259 QVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFK 305

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score =  164 bits (416), Expect = 7e-47
 Identities = 93/360 (25%), Positives = 145/360 (40%), Gaps = 75/360 (20%)

Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY--REAAMIEID 140
                     R+++    G+GTFG V    +      VAIK V    ++  RE   ++I 
Sbjct: 14  ADERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRE---LQIM 70

Query: 141 VLQRLARHDIGGTRCVQIRNWF-----DYRNHIC--IVFEKLGPSLYDFLRKNSYR--SF 191
               +  H       VQ++++F       R  I   +V E +  +L+   R    R  + 
Sbjct: 71  QDLAVLHHP----NIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAP 126

Query: 192 PIDLVRELGRQLLESVAFMHE--LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS 249
           P  L++    QL+ S+  +H   + + H D+KP N+L+                      
Sbjct: 127 PPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLV---------------------- 164

Query: 250 YFKNLPKSSAIKLIDFGS--TTFEHQDH-SYVVSTRHYRAPEVILGLGWNYPC--DLWSV 304
              N      +KL DFGS       + + +Y+  +R+YRAPE+I G   +Y    D+WSV
Sbjct: 165 ---N-EADGTLKLCDFGSAKKLSPSEPNVAYIC-SRYYRAPELIFGNQ-HYTTAVDIWSV 218

Query: 305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADR--RAEKYFRRGARLDWP 362
           GCI  E+  GE +F+   +   L  + RVLG  P   V+R       +        + W 
Sbjct: 219 GCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGC-PSREVLRKLNPSHTDVDLYNSKGIPWS 277

Query: 363 DGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                         +         H    A +  DLL  LL+Y P ER+K  EAL HP+F
Sbjct: 278 -------------NVFS------DHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYF 318

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score =  161 bits (410), Expect = 1e-46
 Identities = 93/346 (26%), Positives = 150/346 (43%), Gaps = 76/346 (21%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE----AAMIEIDVLQRLARH 148
           +Y  L K+GEGT+G V +  + E  E+VA+K VR ++   E    +A+ EI +L+ L +H
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVR-LDDDDEGVPSSALREICLLKEL-KH 60

Query: 149 D-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             I     V++ +       + +VFE     L  +    +      ++V+    QLL+ +
Sbjct: 61  KNI-----VRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCN-GDLDPEIVKSFLFQLLKGL 114

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            F H   ++H DLKP+N+L+                 +++G           +KL +FG 
Sbjct: 115 GFCHSRNVLHRDLKPQNLLI-----------------NRNGE----------LKLANFGL 147

Query: 267 STTFEHQDHSY--VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCS-GEALFQTH 321
           +  F      Y   V T  YR P+V+ G    Y    D+WS GCI  EL + G  LF  +
Sbjct: 148 ARAFGIPVRCYSAEVVTLWYRPPDVLFG-AKLYSTSIDMWSAGCIFAELANAGRPLFPGN 206

Query: 322 ENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
           +  + L  + R+LG P                        WP      D     +K   +
Sbjct: 207 DVDDQLKRIFRLLGTPTEE--------------------QWPSMTKLPD-----YKPYPM 241

Query: 381 ---PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                 ++  V        DLLQ LL+ +P +R+ A EAL+HP+F+
Sbjct: 242 YPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFS 287

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score =  160 bits (408), Expect = 5e-46
 Identities = 90/347 (25%), Positives = 145/347 (41%), Gaps = 79/347 (22%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE----AAMIEIDVLQRLARH 148
            Y  L K+GEGT+  V +        LVA+K +R  ++  E     A+ E+ +L+ L +H
Sbjct: 3   TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHE--EGAPCTAIREVSLLKDL-KH 59

Query: 149 D-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             I     V + +       + +VFE L   L  +L  +      +  V+    QLL  +
Sbjct: 60  ANI-----VTLHDIIHTEKSLTLVFEYLDKDLKQYL-DDCGNIINMHNVKLFLFQLLRGL 113

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
           A+ H  +++H DLKP+N+L+                 ++ G           +KL DFG 
Sbjct: 114 AYCHRQKVLHRDLKPQNLLI-----------------NERG----------ELKLADFGL 146

Query: 267 STTFEHQDHSY---VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTH 321
           +        +Y   VV T  YR P+++LG   +Y    D+W VGCI  E+ +G  LF   
Sbjct: 147 ARAKSIPTKTYDNEVV-TLWYRPPDILLG-STDYSTQIDMWGVGCIFYEMATGRPLFPGS 204

Query: 322 ENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
              E L  + R+LG P                        WP   ++ +     +K    
Sbjct: 205 TVEEQLHFIFRILGTPTEE--------------------TWPGILSNEE-----FKTYNY 239

Query: 381 P----NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
           P      ++ H      D  DLL  LL+++   R+ A +A++HPFF 
Sbjct: 240 PKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFL 286

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score =  160 bits (407), Expect = 5e-46
 Identities = 92/350 (26%), Positives = 155/350 (44%), Gaps = 76/350 (21%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYRE----AAMIEIDVLQRLARH 148
           +++ L K+G GT+  V +  +      VA+K V+  ++  E     A+ EI +++ L +H
Sbjct: 6   QFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSE--EGTPSTAIREISLMKEL-KH 62

Query: 149 D-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLR----KNSYRSFPIDLVRELGRQL 203
           + I     V++ +     N + +VFE +   L  ++      N+ R   ++LV+    QL
Sbjct: 63  ENI-----VRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQL 117

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L+ +AF HE +++H DLKP+N+L+                 +K G           +KL 
Sbjct: 118 LQGLAFCHENKILHRDLKPQNLLI-----------------NKRGQ----------LKLG 150

Query: 264 DFG-STTFEHQDHSY---VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEAL 317
           DFG +  F    +++   VV T  YRAP+V++G    Y    D+WS GCIL E+ +G+ L
Sbjct: 151 DFGLARAFGIPVNTFSSEVV-TLWYRAPDVLMG-SRTYSTSIDIWSCGCILAEMITGKPL 208

Query: 318 FQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD--SMRAV 374
           F    + E L ++  ++G P                        WP              
Sbjct: 209 FPGTNDEEQLKLIFDIMGTPNES--------------------LWPSVTKLPKYNPNIQQ 248

Query: 375 WKLLRLPNLIMQHVDHSAGDL-IDLLQGLLRYDPAERLKAREALRHPFFT 423
                L  ++  H         +D L GLL+ +P  RL A++AL HP+F 
Sbjct: 249 RPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFA 298

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score =  162 bits (411), Expect = 6e-46
 Identities = 91/374 (24%), Positives = 149/374 (39%), Gaps = 90/374 (24%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY--RE------------ 133
           E  + +Y +   +G G+FG V E FD E  +  A+K V    +Y  RE            
Sbjct: 3   ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNI 62

Query: 134 ----------------AAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGP 177
                                 D  +   +++        +        ++ ++ E +  
Sbjct: 63  IKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD 122

Query: 178 SLYDFLR--KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV 235
           +L+  L+    S RS P++L+     QL  +V F+H L + H D+KP+N+L+        
Sbjct: 123 TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLV-------- 174

Query: 236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS--TTFEHQDH-SYVVSTRHYRAPEVILG 292
                            N  K + +KL DFGS       +   +Y+  +R YRAPE++LG
Sbjct: 175 -----------------N-SKDNTLKLCDFGSAKKLIPSEPSVAYIC-SRFYRAPELMLG 215

Query: 293 LGWNYPC--DLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRA--DRR 348
               Y    DLWS+GC+  EL  G+ LF    +++ L  + +++G  P    +       
Sbjct: 216 -ATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGT-PTKEQMIRMNPHY 273

Query: 349 AEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA 408
            E  F      DW              K+L          + +    IDLL+ +LRY+P 
Sbjct: 274 TEVRFPTLKAKDWR-------------KILP---------EGTPSLAIDLLEQILRYEPD 311

Query: 409 ERLKAREALRHPFF 422
            R+   EA+ HPFF
Sbjct: 312 LRINPYEAMAHPFF 325

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score =  159 bits (405), Expect = 2e-45
 Identities = 70/351 (19%), Positives = 128/351 (36%), Gaps = 81/351 (23%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR 147
              T  Y +   +G G++     C         A+KI   I+K +     EI++L R  +
Sbjct: 18  IQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKI---IDKSKRDPTEEIEILLRYGQ 74

Query: 148 HD-IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           H  I     + +++ +D   ++ +V E + G  L D + +  +  F       +   + +
Sbjct: 75  HPNI-----ITLKDVYDDGKYVYVVTELMKGGELLDKILRQKF--FSEREASAVLFTITK 127

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V ++H   ++H DLKP NIL V                              +I++ DF
Sbjct: 128 TVEYLHAQGVVHRDLKPSNILYVDES-----------------------GNPESIRICDF 164

Query: 266 G-STTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           G +     ++        T ++ APEV+   G++  CD+WS+G +L  + +G   F    
Sbjct: 165 GFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGP 224

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
           +     ++ R+                        +     G          W       
Sbjct: 225 DDTPEEILARIG---------------------SGKFSLSGGY---------WN------ 248

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                V  +A DL+     +L  DP +RL A   LRHP+     +   + L
Sbjct: 249 ----SVSDTAKDLVS---KMLHVDPHQRLTAALVLRHPWIVHWDQLPQYQL 292

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score =  158 bits (402), Expect = 3e-45
 Identities = 65/337 (19%), Positives = 107/337 (31%), Gaps = 89/337 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD 149
            ++ LS++G G++G+V +    E   L A+K   S     K R   + E+   +++ +H 
Sbjct: 58  SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHP 117

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
                CV++   ++    + +  E  GPSL          S P   V    R  L ++A 
Sbjct: 118 ----CCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAH 172

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-ST 268
           +H   L+H D+KP NI L                    G            KL DFG   
Sbjct: 173 LHSQGLVHLDVKPANIFL-----------------GPRGR----------CKLGDFGLLV 205

Query: 269 TFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                           Y APE++ G  +    D++S+G  ++E+     L    E  + L
Sbjct: 206 ELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQL 264

Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
                +       +                         S +                  
Sbjct: 265 -RQGYLPPEFTAGL-------------------------SSE------------------ 280

Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                  L  +L  +L  DP  R  A   L  P   +
Sbjct: 281 -------LRSVLVMMLEPDPKLRATAEALLALPVLRQ 310

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score =  159 bits (404), Expect = 3e-45
 Identities = 89/346 (25%), Positives = 150/346 (43%), Gaps = 75/346 (21%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA------AMIEIDVLQRLA 146
           RY  L  +GEG F  V +  D    ++VAIK ++  ++          A+ EI +LQ L 
Sbjct: 11  RYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL- 69

Query: 147 RHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
            H  I     + + + F ++++I +VF+ +   L   ++ NS        ++      L+
Sbjct: 70  SHPNI-----IGLLDAFGHKSNISLVFDFMETDLEVIIKDNS-LVLTPSHIKAYMLMTLQ 123

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            + ++H+  ++H DLKP N+LL                  ++G           +KL DF
Sbjct: 124 GLEYLHQHWILHRDLKPNNLLL-----------------DENG----------VLKLADF 156

Query: 266 G-STTFEHQDHSY---VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQ 319
           G + +F   + +Y   VV TR YRAPE++ G    Y    D+W+VGCIL EL        
Sbjct: 157 GLAKSFGSPNRAYTHQVV-TRWYRAPELLFG-ARMYGVGVDMWAVGCILAELLLRVPFLP 214

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
              +L+ L  +   LG  P           E+         WPD  +  D     +   +
Sbjct: 215 GDSDLDQLTRIFETLGT-PT----------EEQ--------WPDMCSLPD-----YVTFK 250

Query: 380 L--PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                 +      +  DL+DL+QGL  ++P  R+ A +AL+  +F+
Sbjct: 251 SFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFS 296

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  153 bits (389), Expect = 1e-43
 Identities = 68/341 (19%), Positives = 128/341 (37%), Gaps = 73/341 (21%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD---- 149
           +  ++ +G+G FGQVV+  +       AIK +R   +     + E+ +L  L  H     
Sbjct: 8   FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASL-NHQYVVR 66

Query: 150 -----IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQL 203
                +     V+       ++ + I  E     +LYD +   +  +   D    L RQ+
Sbjct: 67  YYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQI 125

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKL 262
           LE+++++H   +IH DLKP NI +  +  VK+ D  F L+++         L   +    
Sbjct: 126 LEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGD--FGLAKNVHRSLDILKLDSQNLPGS 183

Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALFQTH 321
            D  ++          + T  Y A EV+ G G  N   D++S+G I  E+      F T 
Sbjct: 184 SDNLTS---------AIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYP---FSTG 231

Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
               ++  ++++                     R   +++P                   
Sbjct: 232 MERVNI--LKKL---------------------RSVSIEFPP------------------ 250

Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                  D+       +++ L+ +DP +R  AR  L   + 
Sbjct: 251 ----DFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score =  156 bits (397), Expect = 4e-43
 Identities = 79/354 (22%), Positives = 144/354 (40%), Gaps = 84/354 (23%)

Query: 78  KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV---RSINKYREA 134
             G ++ +   +L+  Y+ + K+G G +G+V+ C D       AIKI+            
Sbjct: 23  TPGMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSK 82

Query: 135 AMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPI 193
            + E+ VL+ L   +I     +++ ++F+ + +  +V E   G  L+D +       F  
Sbjct: 83  LLEEVAVLKLLDHPNI-----MKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMK--FNE 135

Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
                + +Q+L  V ++H+  ++H DLKPEN+LL S E                      
Sbjct: 136 VDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKE---------------------- 173

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
             K + IK++DFG +            + T +Y APEV+    ++  CD+WS+G IL  L
Sbjct: 174 --KDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFIL 230

Query: 312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSM 371
            +G   F    + E   ++ +V              + +  F      +W          
Sbjct: 231 LAGYPPFGGQTDQE---ILRKVE-------------KGKYTFD---SPEWK--------- 262

Query: 372 RAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                          +V   A    DL++ +L++D   R+ A++AL HP+    
Sbjct: 263 ---------------NVSEGA---KDLIKQMLQFDSQRRISAQQALEHPWIKEM 298

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score =  156 bits (397), Expect = 5e-43
 Identities = 84/357 (23%), Positives = 142/357 (39%), Gaps = 84/357 (23%)

Query: 80  GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV---RSINKYREAAM 136
           G            RY I+  +G+G+FG+V++C D   ++  A+K++    + NK     +
Sbjct: 10  GRENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTIL 69

Query: 137 IEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDL 195
            E+++L++L   +I     +++    +  +   IV E   G  L+D + K     F    
Sbjct: 70  REVELLKKLDHPNI-----MKLFEILEDSSSFYIVGELYTGGELFDEIIKRKR--FSEHD 122

Query: 196 VRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLP 255
              + +Q+   + +MH+  ++H DLKPENILL S E                        
Sbjct: 123 AARIIKQVFSGITYMHKHNIVHRDLKPENILLESKE------------------------ 158

Query: 256 KSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
           K   IK+IDFG +T   Q+      + T +Y APEV+ G  ++  CD+WS G IL  L S
Sbjct: 159 KDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLS 217

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G   F      +   +++RV                +  F       W            
Sbjct: 218 GTPPFYGKNEYD---ILKRVE-------------TGKYAFDLP---QWR----------- 247

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCG 430
                         +   A DLI   + +L + P+ R+ A + L HP+  +      
Sbjct: 248 -------------TISDDAKDLI---RKMLTFHPSLRITATQCLEHPWIQKYSSETP 288

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score =  154 bits (391), Expect = 1e-42
 Identities = 71/368 (19%), Positives = 133/368 (36%), Gaps = 90/368 (24%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-YREAAMIEIDVLQRLA 146
           ++L         +G G+ G VV    + +   VA+K    +   + + A++EI +L    
Sbjct: 11  QSLKNLVVSEKILGYGSSGTVVFQ-GSFQGRPVAVKR---MLIDFCDIALMEIKLLTESD 66

Query: 147 RHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELG----- 200
            H  +     ++          + I  E    +L D +   +     + L +E       
Sbjct: 67  DHPNV-----IRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLL 121

Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           RQ+   VA +H L++IH DLKP+NIL+ +              SS+  +  +   ++  I
Sbjct: 122 RQIASGVAHLHSLKIIHRDLKPQNILVST--------------SSRFTADQQTGAENLRI 167

Query: 261 KLIDFG-STTFEHQDHSYVVSTRH------YRAPEVILGLGW-------NYPCDLWSVGC 306
            + DFG     +    S+  +  +      +RAPE++                D++S+GC
Sbjct: 168 LISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGC 227

Query: 307 IL-VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGA 365
           +    L  G+  F                                              +
Sbjct: 228 VFYYILSKGKHPF------------------------------------------GDKYS 245

Query: 366 TSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
              + +R ++ L  +  L  + +   A DLI     ++ +DP +R  A + LRHP F   
Sbjct: 246 RESNIIRGIFSLDEMKCLHDRSLIAEATDLI---SQMIDHDPLKRPTAMKVLRHPLFWPK 302

Query: 426 VRRCGFPL 433
            ++  F L
Sbjct: 303 SKKLEFLL 310

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score =  155 bits (394), Expect = 1e-42
 Identities = 83/356 (23%), Positives = 147/356 (41%), Gaps = 85/356 (23%)

Query: 80  GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI 137
           G +V       + RY+    +G+G+FG+V+ C D    +  A+K++  R + +  +   +
Sbjct: 14  GMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESL 73

Query: 138 --EIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID 194
             E+ +L++L   +I     +++  +F+ + +  +V E   G  L+D +       F   
Sbjct: 74  LREVQLLKQLDHPNI-----MKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKR--FSEV 126

Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
               + RQ+L  + +MH+ +++H DLKPEN+LL S                         
Sbjct: 127 DAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKS----------------------- 163

Query: 255 PKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC 312
            K + I++IDFG +T           + T +Y APEV+ G  ++  CD+WS G IL  L 
Sbjct: 164 -KDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILL 221

Query: 313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
           SG   F      +   ++++V              + +  F       W           
Sbjct: 222 SGCPPFNGANEYD---ILKKVE-------------KGKYTFELP---QWK---------- 252

Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                          V  SA DLI   + +L Y P+ R+ AR+AL H +     + 
Sbjct: 253 --------------KVSESAKDLI---RKMLTYVPSMRISARDALDHEWIQTYTKE 291

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score =  151 bits (383), Expect = 4e-42
 Identities = 88/362 (24%), Positives = 151/362 (41%), Gaps = 82/362 (22%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA----AMIEIDVLQRLARH 148
           +Y  L+K+G+GTFG+V +    +  + VA+K V  +   +E     A+ EI +LQ L +H
Sbjct: 18  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVL-MENEKEGFPITALREIKILQLL-KH 75

Query: 149 D-IGGTRCV---QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
           + +     +   +   +   +  I +VF+     L   L  N    F +  ++ + + LL
Sbjct: 76  ENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLS-NVLVKFTLSEIKRVMQMLL 134

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + ++H  +++H D+K  N+L+                 ++DG           +KL D
Sbjct: 135 NGLYYIHRNKILHRDMKAANVLI-----------------TRDGV----------LKLAD 167

Query: 265 FG-----STTFEHQDHSY---VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSG 314
           FG     S     Q + Y   VV T  YR PE++LG   +Y  P DLW  GCI+ E+ + 
Sbjct: 168 FGLARAFSLAKNSQPNRYTNRVV-TLWYRPPELLLG-ERDYGPPIDLWGAGCIMAEMWTR 225

Query: 315 EALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
             + Q +     LA++ ++ G   P                      WP+          
Sbjct: 226 SPIMQGNTEQHQLALISQLCGSITPE--------------------VWPNVDNYEL---- 261

Query: 374 VWKLLRLP----NLIMQHVDHSAGDL--IDLLQGLLRYDPAERLKAREALRHPFFTRDVR 427
            ++ L L       +   +     D   +DL+  LL  DPA+R+ + +AL H FF  D  
Sbjct: 262 -YEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPM 320

Query: 428 RC 429
             
Sbjct: 321 PS 322

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score =  148 bits (375), Expect = 2e-41
 Identities = 84/343 (24%), Positives = 132/343 (38%), Gaps = 87/343 (25%)

Query: 101 GEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLARHD-IGGTRCVQI 158
           GEG+F    +C   +  +  A+KI   I+K  EA    EI  L+    H  I     V++
Sbjct: 20  GEGSFSICRKCVHKKSNQAFAVKI---ISKRMEANTQKEITALKLCEGHPNI-----VKL 71

Query: 159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIH 217
              F  + H  +V E L G  L++  R    + F       + R+L+ +V+ MH++ ++H
Sbjct: 72  HEVFHDQLHTFLVMELLNGGELFE--RIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVH 129

Query: 218 TDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-STTFEHQDHS 276
            DLKPEN+L                              +  IK+IDFG +      +  
Sbjct: 130 RDLKPENLLFTDEN------------------------DNLEIKIIDFGFARLKPPDNQP 165

Query: 277 Y--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF----QTHENLEHLAMM 330
                 T HY APE++   G++  CDLWS+G IL  + SG+  F    ++      + +M
Sbjct: 166 LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIM 225

Query: 331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH 390
           +++                           +   A         WK          +V  
Sbjct: 226 KKIK---------------------KGDFSFEGEA---------WK----------NVSQ 245

Query: 391 SAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
            A DLI   QGLL  DP +RLK      + +     +    PL
Sbjct: 246 EAKDLI---QGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNPL 285

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score =  148 bits (376), Expect = 3e-41
 Identities = 76/403 (18%), Positives = 134/403 (33%), Gaps = 130/403 (32%)

Query: 77  DKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR------SINK 130
            ++ ++       L  +Y +   +G+G++G V    +N+ + + AIKI+          K
Sbjct: 11  RENLYFQGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPK 70

Query: 131 YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYR 189
             E    E+ ++++L   +I      ++   ++   +IC+V E   G  L D L      
Sbjct: 71  DVERIKTEVRLMKKLHHPNI-----ARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDD 125

Query: 190 --------------------------------------SFPIDLVRELGRQLLESVAFMH 211
                                                      L+  + RQ+  ++ ++H
Sbjct: 126 STGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH 185

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-STTF 270
              + H D+KPEN L  +                          KS  IKL+DFG S  F
Sbjct: 186 NQGICHRDIKPENFLFST-------------------------NKSFEIKLVDFGLSKEF 220

Query: 271 EHQDHSY------VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEALFQTHE 322
              ++           T ++ APEV+     +Y   CD WS G +L  L  G   F    
Sbjct: 221 YKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFP-GV 279

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
           N      + +VL                       +L + +           +       
Sbjct: 280 N--DADTISQVL---------------------NKKLCFEN---------PNYN------ 301

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                +   A DL+     LL  +  ER  A  AL+HP+ ++ 
Sbjct: 302 ----VLSPLARDLL---SNLLNRNVDERFDAMRALQHPWISQF 337

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score =  146 bits (371), Expect = 7e-41
 Identities = 60/354 (16%), Positives = 110/354 (31%), Gaps = 69/354 (19%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHD- 149
            + +   +G+G    V      +  +L AIK+    S  +  +  M E +VL++L  H  
Sbjct: 10  LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL-NHKN 68

Query: 150 IGGTRCVQIRNWFDYRN--HICIVFEKL-GPSLYDFLRKN-SYRSFPIDLVRELGRQLLE 205
           I     V++    +     H  ++ E     SLY  L +  +    P      + R ++ 
Sbjct: 69  I-----VKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVG 123

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            +  + E  ++H ++KP NI+ V  E                          S  KL DF
Sbjct: 124 GMNHLRENGIVHRNIKPGNIMRVIGE-----------------------DGQSVYKLTDF 160

Query: 266 G-STTFEHQDHSY-VVSTRHYRAPEVILGLGWNYP--------CDLWSVGCILVELCSGE 315
           G +   E  +    +  T  Y  P++                  DLWS+G       +G 
Sbjct: 161 GAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGS 220

Query: 316 ALFQTHENLEHLA-MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
             F+  E       +M +++   P          +         +DW        S+   
Sbjct: 221 LPFRPFEGPRRNKEVMYKIITGKPS------GAISGVQKAENGPIDWSGDMPVSCSLSRG 274

Query: 375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
            ++L                L  +L  +L  D  +     +             
Sbjct: 275 LQVL----------------LTPVLANILEADQEKCWGFDQFFAETSDILHRGN 312

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score =  146 bits (371), Expect = 8e-41
 Identities = 75/341 (21%), Positives = 130/341 (38%), Gaps = 80/341 (23%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLA 146
            N+   +  +  +G G F +V         +L A+K ++    +R++++  EI VL+++ 
Sbjct: 5   TNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIK 64

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
             +I     V + + ++   H  +V + + G  L+D + +     +       + +Q+L 
Sbjct: 65  HENI-----VTLEDIYESTTHYYLVMQLVSGGELFDRILERGV--YTEKDASLVIQQVLS 117

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V ++HE  ++H DLKPEN+L ++ E                        ++S I + DF
Sbjct: 118 AVKYLHENGIVHRDLKPENLLYLTPE------------------------ENSKIMITDF 153

Query: 266 G-STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
           G S   ++   S    T  Y APEV+    ++   D WS+G I   L  G   F   E  
Sbjct: 154 GLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYE-ETE 212

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
             L   E++                   F       W D                     
Sbjct: 213 SKL--FEKIK-------------EGYYEFESP---FWDD--------------------- 233

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
              +  SA D I     LL  DP ER    +AL HP+   +
Sbjct: 234 ---ISESAKDFIC---HLLEKDPNERYTCEKALSHPWIDGN 268

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  145 bits (369), Expect = 8e-41
 Identities = 63/347 (18%), Positives = 99/347 (28%), Gaps = 100/347 (28%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH---- 148
            ++ +  +G G FGQV +       +   IK    +    E A  E+  L +L  H    
Sbjct: 12  DFKEIELIGSGGFGQVFKAKHRIDGKTYVIKR---VKYNNEKAEREVKALAKL-DHVNIV 67

Query: 149 --------DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
                              +       + I  E     +L  ++ K         L  EL
Sbjct: 68  HYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALEL 127

Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+ + V ++H  +LI+ DLKP NI L                                
Sbjct: 128 FEQITKGVDYIHSKKLINRDLKPSNIFL-----------------VDTKQ---------- 160

Query: 260 IKLIDFG-STTFEH-QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
           +K+ DFG  T+ ++    +    T  Y +PE I    +    DL+++G IL EL     +
Sbjct: 161 VKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELL---HV 217

Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
             T           R  G +                              +         
Sbjct: 218 CDTAFETSKFFTDLR-DGIISDIF-------------------------DKK-------- 243

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                               LLQ LL   P +R    E LR     +
Sbjct: 244 -----------------EKTLLQKLLSKKPEDRPNTSEILRTLTVWK 273

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score =  151 bits (382), Expect = 8e-41
 Identities = 75/357 (21%), Positives = 140/357 (39%), Gaps = 95/357 (26%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--------------SINKYRE 133
             +   Y  + K+G G +G+V+ C +       AIK+++              +I K+ E
Sbjct: 32  GKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHE 91

Query: 134 AAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFP 192
               EI +L+ L   +I     +++ + F+ + +  +V E   G  L++ +       F 
Sbjct: 92  EIYNEISLLKSLDHPNI-----IKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHK--FD 144

Query: 193 IDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK 252
                 + +Q+L  + ++H+  ++H D+KPENILL +                       
Sbjct: 145 ECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKN--------------------- 183

Query: 253 NLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
                  IK++DFG ++F  +D+     + T +Y APEV+    +N  CD+WS G I+  
Sbjct: 184 ---SLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYI 239

Query: 311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS 370
           L  G   F    + +   ++++V              + + YF      DW         
Sbjct: 240 LLCGYPPFGGQNDQD---IIKKVE-------------KGKYYFDFN---DWK-------- 272

Query: 371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR 427
                           ++   A +LI   + +L YD  +R  A EAL   +  +   
Sbjct: 273 ----------------NISDEAKELI---KLMLTYDYNKRCTAEEALNSRWIKKYAN 310

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score =  145 bits (369), Expect = 9e-41
 Identities = 59/343 (17%), Positives = 110/343 (32%), Gaps = 72/343 (20%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHD 149
            +  L K+G G FG V +C       + AIK  +   + +   + A+ E+     L +H 
Sbjct: 12  EFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHS 71

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLES 206
                 V+  + +   +H+ I  E   G SL D + +N      F    +++L  Q+   
Sbjct: 72  ----HVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRG 127

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H + L+H D+KP NI +           +                     K+ D G
Sbjct: 128 LRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASN--------KVMFKIGDLG 179

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
             T              + A EV+          D++++   +V     E L +  +   
Sbjct: 180 HVTRISSPQV-EEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWH 238

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            +       G LP                                        R+P    
Sbjct: 239 EIRQ-----GRLP----------------------------------------RIP---- 249

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                 + +  +LL+ ++  DP  R  A   ++H       R+
Sbjct: 250 ---QVLSQEFTELLKVMIHPDPERRPSAMALVKHSVLLSASRK 289

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score =  147 bits (372), Expect = 1e-40
 Identities = 70/347 (20%), Positives = 128/347 (36%), Gaps = 94/347 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD 149
           +Y  L K+GEG+FG+ +     E      IK +       K RE +  E+ VL  + +H 
Sbjct: 25  KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANM-KHP 83

Query: 150 -IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            I     VQ R  F+    + IV +   G  L+  +       F  D + +   Q+  ++
Sbjct: 84  NI-----VQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLAL 138

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
             +H+ +++H D+K +NI L                 +KDG+          ++L DFG 
Sbjct: 139 KHVHDRKILHRDIKSQNIFL-----------------TKDGT----------VQLGDFGI 171

Query: 267 STTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
           +             + T +Y +PE+     +N   D+W++GC+L ELC+ +  F+   ++
Sbjct: 172 ARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEA-GSM 230

Query: 325 EHLAM--MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
           ++L +  +     P+  H                          S D             
Sbjct: 231 KNLVLKIISGSFPPVSLHY-------------------------SYD------------- 252

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC 429
                       L  L+  L + +P +R      L   F  + + + 
Sbjct: 253 ------------LRSLVSQLFKRNPRDRPSVNSILEKGFIAKRIEKF 287

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score =  146 bits (371), Expect = 2e-40
 Identities = 84/341 (24%), Positives = 136/341 (39%), Gaps = 84/341 (24%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--EIDVLQRL 145
           + L+  + + S++G G    V  C     ++  A+K    + K  +  ++  EI VL RL
Sbjct: 49  DALSDFFEVESELGRGATSIVYRCKQKGTQKPYALK---VLKKTVDKKIVRTEIGVLLRL 105

Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
           +  +I     ++++  F+    I +V E   G  L+D + +  Y  +      +  +Q+L
Sbjct: 106 SHPNI-----IKLKEIFETPTEISLVLELVTGGELFDRIVEKGY--YSERDAADAVKQIL 158

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
           E+VA++HE  ++H DLKPEN+L  +                            + +K+ D
Sbjct: 159 EAVAYLHENGIVHRDLKPENLLYATPA------------------------PDAPLKIAD 194

Query: 265 FG-STTFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           FG S   EHQ     V  T  Y APE++ G  +    D+WSVG I   L  G   F    
Sbjct: 195 FGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER 254

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
             +   M  R+L               E YF       W +                   
Sbjct: 255 GDQ--FMFRRIL-------------NCEYYFISP---WWDE------------------- 277

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                V  +A DL+     L+  DP +RL   +AL+HP+ T
Sbjct: 278 -----VSLNAKDLVR---KLIVLDPKKRLTTFQALQHPWVT 310

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score =  146 bits (370), Expect = 2e-40
 Identities = 76/355 (21%), Positives = 133/355 (37%), Gaps = 85/355 (23%)

Query: 88  ENLTPRYRILSKM-GEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA 146
             +T  Y++  ++ G G  G+V+ECF     +  A+K+   +      A  E+D   + +
Sbjct: 24  YAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKL---LYD-SPKARQEVDHHWQAS 79

Query: 147 RHD-IGGTRCVQIRNWFD----YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELG 200
               I     V I + ++     +  + I+ E + G  L+  +++   ++F      E+ 
Sbjct: 80  GGPHI-----VCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIM 134

Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           R +  ++ F+H   + H D+KPEN+L  S E                        K + +
Sbjct: 135 RDIGTAIQFLHSHNIAHRDVKPENLLYTSKE------------------------KDAVL 170

Query: 261 KLIDFG-STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
           KL DFG +             T +Y APEV+    ++  CD+WS+G I+  L  G   F 
Sbjct: 171 KLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFY 230

Query: 320 T-HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
           +         M  R+                     R  +  +P+           W   
Sbjct: 231 SNTGQAISPGMKRRI---------------------RLGQYGFPNP---------EWS-- 258

Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                    V   A  LI   + LL+ DP ERL   + + HP+  + +     PL
Sbjct: 259 --------EVSEDAKQLI---RLLLKTDPTERLTITQFMNHPWINQSMVVPQTPL 302

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score =  145 bits (369), Expect = 2e-40
 Identities = 69/344 (20%), Positives = 128/344 (37%), Gaps = 80/344 (23%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR 147
           + L  +Y I   +G G FG V  C +   K+    K V+     +     EI +L    R
Sbjct: 1   KELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA-R 59

Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           H       + +   F+    + ++FE + G  +++ +  +++       +     Q+ E+
Sbjct: 60  HR----NILHLHESFESMEELVMIFEFISGLDIFERINTSAF-ELNEREIVSYVHQVCEA 114

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + F+H   + H D++PENI+  +                          +SS IK+I+FG
Sbjct: 115 LQFLHSHNIGHFDIRPENIIYQT-------------------------RRSSTIKIIEFG 149

Query: 267 STTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
                    ++  + +   Y APEV      +   D+WS+G ++  L SG   F    N 
Sbjct: 150 QARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ 209

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           +   ++E ++              AE  F   A   + +                     
Sbjct: 210 Q---IIENIM-------------NAEYTFDEEA---FKE--------------------- 229

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
              +   A D +     LL  +   R+ A EAL+HP+  + + R
Sbjct: 230 ---ISIEAMDFV---DRLLVKERKSRMTASEALQHPWLKQKIER 267

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score =  146 bits (370), Expect = 2e-40
 Identities = 90/344 (26%), Positives = 149/344 (43%), Gaps = 52/344 (15%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--EIDVLQRLA 146
           N++  +++ S +GEG +G V         E+VAIK +   +K   A     EI +L+   
Sbjct: 8   NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHF- 66

Query: 147 RHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           +H+ I     +Q  + F+  N + I+ E +   L+  +          D ++    Q L 
Sbjct: 67  KHENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSD---DHIQYFIYQTLR 123

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKLID 264
           +V  +H   +IH DLKP N+L+ S   +KV D  F L+R   + +   + P      +++
Sbjct: 124 AVKVLHGSNVIHRDLKPSNLLINSNCDLKVCD--FGLARIIDESAADNSEPTGQQSGMVE 181

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHEN 323
                       +V  TR YRAPEV+L    ++   D+WS GCIL EL     +F   + 
Sbjct: 182 ------------FVA-TRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDY 228

Query: 324 LEHLAMMERVLG-PLPHHMVIR-ADRRAEKYFR---RGARLDWPDGATSRDSMRAVWKLL 378
              L ++  ++G P   + +      RA +Y +                           
Sbjct: 229 RHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEK--------------- 273

Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             P      V+      IDLLQ +L +DPA+R+ A+EAL HP+ 
Sbjct: 274 MFPR-----VNPKG---IDLLQRMLVFDPAKRITAKEALEHPYL 309

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score =  146 bits (370), Expect = 3e-40
 Identities = 75/360 (20%), Positives = 122/360 (33%), Gaps = 94/360 (26%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR---------EAAMIEI 139
                Y +   +G+G F  V  C + E  +  A+KI   ++  +         E    E 
Sbjct: 21  LFEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKI---VDVAKFTSSPGLSTEDLKREA 77

Query: 140 DVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFL--RKNSYRSFPIDLV 196
            +   L    I     V++   +     + +VFE + G  L   +  R ++   +   + 
Sbjct: 78  SICHMLKHPHI-----VELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVA 132

Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
               RQ+LE++ + H+  +IH D+KP  +LL S E                         
Sbjct: 133 SHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKE------------------------N 168

Query: 257 SSAIKLIDFG-STTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
           S+ +KL  FG +             V T H+ APEV+    +  P D+W  G IL  L S
Sbjct: 169 SAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLS 228

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G   F          + E ++             + +          W            
Sbjct: 229 GCLPFY-GTKER---LFEGII-------------KGKYKMNPR---QWSH---------- 258

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                         +  SA DL+   + +L  DPAER+   EAL HP+     R      
Sbjct: 259 --------------ISESAKDLV---RRMLMLDPAERITVYEALNHPWLKERDRYAYKIH 301

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score =  146 bits (371), Expect = 4e-40
 Identities = 93/343 (27%), Positives = 156/343 (45%), Gaps = 25/343 (7%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMI--EIDVLQRL 145
           ++  +Y ++ K+G+G +G V +  D    E+VA+K I  +     +A     EI +L  L
Sbjct: 6   HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTEL 65

Query: 146 ARHD-IGGTRCVQIRNWF--DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           + H+ I     V + N    D    + +VF+ +   L+  +R N          + +  Q
Sbjct: 66  SGHENI-----VNLLNVLRADNDRDVYLVFDYMETDLHAVIRANILEP---VHKQYVVYQ 117

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIK 261
           L++ + ++H   L+H D+KP NILL +  +VKV D  F LSRS  +     N    S  +
Sbjct: 118 LIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVAD--FGLSRSFVNIRRVTNNIPLSINE 175

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQT 320
             +            YV  TR YRAPE++LG   +    D+WS+GCIL E+  G+ +F  
Sbjct: 176 NTENFDDDQPILTD-YVA-TRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPG 233

Query: 321 HENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
              +  L  +  V+  P    +       A+               +++  +   WK L 
Sbjct: 234 SSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKV-EIRQSNKRDIFTKWKNLL 292

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
           L        +  A   +DLL  LL+++P +R+ A +AL+HPF 
Sbjct: 293 LKINPKADCNEEA---LDLLDKLLQFNPNKRISANDALKHPFV 332

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score =  143 bits (364), Expect = 4e-40
 Identities = 85/357 (23%), Positives = 142/357 (39%), Gaps = 84/357 (23%)

Query: 78  KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV---RSINKYREA 134
             G            RY I+  +G+G+FG+V++C D   ++  A+K++    + NK    
Sbjct: 8   SSGRENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTST 67

Query: 135 AMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPI 193
            + E+++L++L   +I     +++    +  +   IV E   G  L+D + K     F  
Sbjct: 68  ILREVELLKKLDHPNI-----MKLFEILEDSSSFYIVGELYTGGELFDEIIKRKR--FSE 120

Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
                + +Q+   + +MH+  ++H DLKPENILL S E                      
Sbjct: 121 HDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKE---------------------- 158

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL 311
             K   IK+IDFG +T   Q+      + T +Y APEV+ G  ++  CD+WS G IL  L
Sbjct: 159 --KDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYIL 215

Query: 312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSM 371
            SG   F   +N     +++RV                +  F       W          
Sbjct: 216 LSGTPPF-YGKNEY--DILKRVE-------------TGKYAFDLP---QWR--------- 247

Query: 372 RAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                           +   A DLI     +L + P+ R+ A + L HP+  +    
Sbjct: 248 ---------------TISDDAKDLIR---KMLTFHPSLRITATQCLEHPWIQKYSSE 286

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score =  145 bits (368), Expect = 6e-40
 Identities = 73/378 (19%), Positives = 132/378 (34%), Gaps = 90/378 (23%)

Query: 66  PRTGSPPW-RPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKI 124
           P   S    +   +   ++       +  Y +  ++G+G F  V  C         A KI
Sbjct: 2   PHMASMTGGQQMGRGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKI 61

Query: 125 VRSINK----YREAAMI--EIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GP 177
              IN      R+   +  E  + ++L   +I     V++ +     +   +VF+ + G 
Sbjct: 62  ---INTKKLSARDFQKLEREARICRKLQHPNI-----VRLHDSIQEESFHYLVFDLVTGG 113

Query: 178 SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD 237
            L++ +    +  +         +Q+LES+A+ H   ++H +LKPEN+LL S        
Sbjct: 114 ELFEDIVAREF--YSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKA------ 165

Query: 238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGW 295
                             K +A+KL DFG     +   ++     T  Y +PEV+    +
Sbjct: 166 ------------------KGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPY 207

Query: 296 NYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRR 355
           + P D+W+ G IL  L  G   F   E+     +  ++                   +  
Sbjct: 208 SKPVDIWACGVILYILLVGYPPFW-DED--QHRLYAQIK-------------AGAYDYPS 251

Query: 356 GARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKARE 415
               +W                          V   A  LID    +L  +P +R+ A +
Sbjct: 252 P---EWD------------------------TVTPEAKSLID---SMLTVNPKKRITADQ 281

Query: 416 ALRHPFFTRDVRRCGFPL 433
           AL+ P+     R      
Sbjct: 282 ALKVPWICNRERVASAIH 299

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score =  144 bits (365), Expect = 7e-40
 Identities = 77/357 (21%), Positives = 127/357 (35%), Gaps = 81/357 (22%)

Query: 89  NLTPRYRILSKM-GEGTFGQVVECFDNEKKELVAIKIV-RSINKYREAAMIEIDVLQRLA 146
                Y++   + GEG   +V  C +    +  A+KI+ +     R     E+++L +  
Sbjct: 9   RFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQ 68

Query: 147 RHD-IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
            H  +     +++  +F+  +   +VFEK+ G S+   + K   R F       + + + 
Sbjct: 69  GHRNV-----LELIEFFEEEDRFYLVFEKMRGGSILSHIHKR--RHFNELEASVVVQDVA 121

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
            ++ F+H   + H DLKPENIL                             + S +K+ D
Sbjct: 122 SALDFLHNKGIAHRDLKPENILCEHPN------------------------QVSPVKICD 157

Query: 265 FG-STTFEHQDHSYVVSTR---------HYRAPEVILGLGW---NY--PCDLWSVGCILV 309
           F   +  +       +ST           Y APEV+         Y   CDLWS+G IL 
Sbjct: 158 FDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILY 217

Query: 310 ELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD 369
            L SG   F                 P   +M+  + +  +  F      DW        
Sbjct: 218 ILLSGYPPFV-GRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDK---DWA------- 266

Query: 370 SMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV 426
                            H+  +A DLI     LL  D  +RL A + L+HP+     
Sbjct: 267 -----------------HISCAAKDLI---SKLLVRDAKQRLSAAQVLQHPWVQGCA 303

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score =  142 bits (360), Expect = 1e-39
 Identities = 71/347 (20%), Positives = 124/347 (35%), Gaps = 92/347 (26%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR----EAAMIEIDVLQ 143
            ++   Y + + +G G++G+V        +   A K    I KY     +    EI++++
Sbjct: 5   GDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKK---IPKYFVEDVDRFKQEIEIMK 61

Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQ 202
            L   +I     +++   F+    I +V E   G  L++ +       F       + + 
Sbjct: 62  SLDHPNI-----IRLYETFEDNTDIYLVMELCTGGELFERVVHKRV--FRESDAARIMKD 114

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L +VA+ H+L + H DLKPEN L ++                            S +KL
Sbjct: 115 VLSAVAYCHKLNVAHRDLKPENFLFLTDS------------------------PDSPLKL 150

Query: 263 IDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF-- 318
           IDFG              V T +Y +P+V+ G  +   CD WS G ++  L  G   F  
Sbjct: 151 IDFGLAARFKPGKMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSA 209

Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
            T   +     M ++                           +P+           W   
Sbjct: 210 PTDSEV-----MLKIR---------------------EGTFTFPE---------KDWL-- 232

Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                   +V   A  LI   + LL   P +R+ + +AL H +F + 
Sbjct: 233 --------NVSPQAESLI---RRLLTKSPKQRITSLQALEHEWFEKQ 268

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score =  142 bits (360), Expect = 2e-39
 Identities = 77/353 (21%), Positives = 123/353 (34%), Gaps = 90/353 (25%)

Query: 80  GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-- 137
           G         +   +    K+G G FG V    +        IK    INK R    +  
Sbjct: 10  GRENLYFQGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKT---INKDRSQVPMEQ 66

Query: 138 ---EIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFL--RKNSYRSF 191
              EI+VL+ L   +I     ++I   F+  +++ IV E   G  L + +   +   ++ 
Sbjct: 67  IEAEIEVLKSLDHPNI-----IKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKAL 121

Query: 192 PIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF 251
               V EL +Q++ ++A+ H   ++H DLKPENIL                         
Sbjct: 122 SEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTS-------------------- 161

Query: 252 KNLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILV 309
                 S IK+IDFG       D        T  Y APEV       + CD+WS G ++ 
Sbjct: 162 ----PHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKR-DVTFKCDIWSAGVVMY 216

Query: 310 ELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD 369
            L +G   F    +LE   + ++                 E  +      +         
Sbjct: 217 FLLTGCLPFT-GTSLE--EVQQKAT-------------YKEPNYAV----EC-------- 248

Query: 370 SMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                           + +   A DL+   + +L  DP  R  A + L H +F
Sbjct: 249 ----------------RPLTPQAVDLL---KQMLTKDPERRPSAAQVLHHEWF 282

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score =  146 bits (369), Expect = 2e-39
 Identities = 71/373 (19%), Positives = 122/373 (32%), Gaps = 91/373 (24%)

Query: 70  SPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN 129
           SP    DD D      I   +   +     +G G  G +V          VA+K +  + 
Sbjct: 4   SPSLEQDDGDEETSVVIVGKI--SFCPKDVLGHGAEGTIV-YRGMFDNRDVAVKRI--LP 58

Query: 130 KYREAAMIEIDVLQRLARH-DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSY 188
           +    A  E+ +L+    H ++     ++       R    I  E    +L +++ +  +
Sbjct: 59  ECFSFADREVQLLRESDEHPNV-----IRYFCTEKDRQFQYIAIELCAATLQEYVEQKDF 113

Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
               ++    L +Q    +A +H L ++H DLKP NIL+                     
Sbjct: 114 AHLGLE-PITLLQQTTSGLAHLHSLNIVHRDLKPHNILISM------------------- 153

Query: 249 SYFKNLPKSSAIKLIDFG-STTFEHQDHSY-----VVSTRHYRAPEVILGL---GWNYPC 299
               N        + DFG         HS+     V  T  + APE++         Y  
Sbjct: 154 ---PNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTV 210

Query: 300 DLWSVGCILVE-LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGAR 358
           D++S GC+    +  G   F   ++L+  A +      L                     
Sbjct: 211 DIFSAGCVFYYVISEGSHPF--GKSLQRQANILLGACSLDC------------------- 249

Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
           L                           H D  A +LI   + ++  DP +R  A+  L+
Sbjct: 250 LHPEK-----------------------HEDVIARELI---EKMIAMDPQKRPSAKHVLK 283

Query: 419 HPFFTRDVRRCGF 431
           HPFF    ++  F
Sbjct: 284 HPFFWSLEKQLQF 296

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score =  144 bits (364), Expect = 2e-39
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 36/248 (14%)

Query: 93  RYRILSKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLA 146
              +   +GEG F QV E       D + K+   +K+ +  N +        ++ L+   
Sbjct: 66  LVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSM 125

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFL---RKNSYRSFPIDLVRELGRQ 202
           +H       ++  +   ++N   +V E     +L + +   +    +  P  LV     +
Sbjct: 126 QHMF-----MKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMR 180

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +L  +  +H+  +IH D+KP+N +L                 +           S+ + L
Sbjct: 181 MLYMIEQVHDCEIIHGDIKPDNFIL----------------GNGFLEQDDEDDLSAGLAL 224

Query: 263 IDFG-STTFEHQDHSYVVS----TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
           ID G S   +      + +    T  ++  E++    WNY  D + V   +  +  G  +
Sbjct: 225 IDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYM 284

Query: 318 FQTHENLE 325
              +E  E
Sbjct: 285 KVKNEGGE 292

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score =  143 bits (362), Expect = 2e-39
 Identities = 70/345 (20%), Positives = 117/345 (33%), Gaps = 81/345 (23%)

Query: 87  GENLTPRYRILSK-MGEGTFGQVVECFDNEKKELVAIKIV---RSINKYREAAMIEIDVL 142
            EN    Y + SK +G G F  V +C      +  A K +   R     R   + EI VL
Sbjct: 23  MENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVL 82

Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGR 201
           +          R + +   ++  + I ++ E   G  ++             + V  L +
Sbjct: 83  ELAKSCP----RVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIK 138

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+LE V ++H+  ++H DLKP+NILL S                              IK
Sbjct: 139 QILEGVYYLHQNNIVHLDLKPQNILLSSIY------------------------PLGDIK 174

Query: 262 LIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
           ++DFG +           ++ T  Y APE++         D+W++G I   L +  + F 
Sbjct: 175 IVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFV 234

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
             +N E       +                         +D+ +           +    
Sbjct: 235 GEDNQE---TYLNIS---------------------QVNVDYSEET---------FS--- 258

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                   V   A D I   Q LL  +P +R  A   L H +  +
Sbjct: 259 -------SVSQLATDFI---QSLLVKNPEKRPTAEICLSHSWLQQ 293

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score =  142 bits (360), Expect = 4e-39
 Identities = 79/361 (21%), Positives = 130/361 (36%), Gaps = 86/361 (23%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK------YREAAMIEIDVL 142
           +L  RY  L  +G G  G V    DN+  + VAIK +   +        R     EI ++
Sbjct: 8   DLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALR-----EIKII 62

Query: 143 QRLARHD--IG--------GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFP 192
           +RL  HD  +         G++           N + IV E +   L + L +       
Sbjct: 63  RRL-DHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPLLE-- 119

Query: 193 IDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFK 252
            +  R    QLL  + ++H   ++H DLKP N+ + +                       
Sbjct: 120 -EHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINT----------------------- 155

Query: 253 NLPKSSAIKLIDFG--STTFEHQDHS-----YVVSTRHYRAPEVILGL-GWNYPCDLWSV 304
              +   +K+ DFG       H  H       +V T+ YR+P ++L    +    D+W+ 
Sbjct: 156 ---EDLVLKIGDFGLARIMDPHYSHKGHLSEGLV-TKWYRSPRLLLSPNNYTKAIDMWAA 211

Query: 305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFR---RGARLDW 361
           GCI  E+ +G+ LF     LE + ++   +  +              Y R          
Sbjct: 212 GCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPL 271

Query: 362 PDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                             LP      +   A   +D L+ +L + P +RL A EAL HP+
Sbjct: 272 TQ---------------LLPG-----ISREA---VDFLEQILTFSPMDRLTAEEALSHPY 308

Query: 422 F 422
            
Sbjct: 309 M 309

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score =  143 bits (363), Expect = 5e-39
 Identities = 73/350 (20%), Positives = 131/350 (37%), Gaps = 81/350 (23%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLA 146
            ++   Y IL ++G G FG V  C +     +   K +       +     EI ++ +L 
Sbjct: 47  GSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQL- 105

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
            H     + + + + F+ +  + ++ E L G  L+D +    Y       V    RQ  E
Sbjct: 106 HHP----KLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDY-KMSEAEVINYMRQACE 160

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            +  MHE  ++H D+KPENI+  +                          K+S++K+IDF
Sbjct: 161 GLKHMHEHSIVHLDIKPENIMCET-------------------------KKASSVKIIDF 195

Query: 266 GSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
           G  T  + D       +T  + APE++      +  D+W++G +   L SG + F   ++
Sbjct: 196 GLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD 255

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           LE    ++ V                          ++ + A         +        
Sbjct: 256 LE---TLQNVK---------------------RCDWEFDEDA---------FS------- 275

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
               V   A D I   + LL+ +P +RL   +AL HP+   D       +
Sbjct: 276 ---SVSPEAKDFI---KNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRI 319

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score =  144 bits (366), Expect = 6e-39
 Identities = 98/407 (24%), Positives = 149/407 (36%), Gaps = 80/407 (19%)

Query: 66  PRTGSPPWRPDDKDGHYVFAIGE---NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAI 122
            + G    +                  +  RY I   +G G++G V E +D  +K +VAI
Sbjct: 24  QQEGQQRKQHHSSKPTASMPRPHSDWQIPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAI 83

Query: 123 K-IVRSINKYREAAMI--EIDVLQRLARHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPS 178
           K I+R      +   I  EI +L RL  HD +     + I    +  + + +V E     
Sbjct: 84  KKILRVFEDLIDCKRILREIAILNRL-NHDHVVKVLDIVIPKDVEKFDELYVVLEIADSD 142

Query: 179 LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY 238
                R           ++ L   LL  V ++H   ++H DLKP N L+     VKV D 
Sbjct: 143 FKKLFRTP--VYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCD- 199

Query: 239 KF-LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHS-----YVVSTRHYRAPEVILG 292
            F L+R+        +    S  +      T    ++       +VV TR YRAPE+IL 
Sbjct: 200 -FGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVV-TRWYRAPELILL 257

Query: 293 LGWNY--PCDLWSVGCILVELCS-----------GEALF--------------------Q 319
              NY    D+WS+GCI  EL +              LF                     
Sbjct: 258 QE-NYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFH 316

Query: 320 THENLEHLAMMERVLG-PLPHHMVIRADRRAEKY---FRRGARLDWPDGATSRDSMRAVW 375
           T  N + L ++  +LG P    +       A++Y   F +    D  +            
Sbjct: 317 TRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAE------------ 364

Query: 376 KLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
              R P          A   I LL+ +L ++P +R+   E L HPFF
Sbjct: 365 ---RFPA-----SSADA---IHLLKRMLVFNPNKRITINECLAHPFF 400

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score =  143 bits (362), Expect = 9e-39
 Identities = 84/414 (20%), Positives = 147/414 (35%), Gaps = 97/414 (23%)

Query: 29  PPPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGE 88
           P P P P   P             P       F     ++G    +    D + V    +
Sbjct: 11  PVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIIDDYKVT--SQ 68

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH 148
            L          G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++ 
Sbjct: 69  VL----------GLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQC 114

Query: 149 D-IGGTRCVQIRNWFD----YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQ 202
             I     V+I + ++     R  + IV E L G  L+  ++    ++F      E+ + 
Sbjct: 115 PHI-----VRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKS 169

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           + E++ ++H + + H D+KPEN+L  S                           ++ +KL
Sbjct: 170 IGEAIQYLHSINIAHRDVKPENLLYTSKR------------------------PNAILKL 205

Query: 263 IDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ- 319
            DFG        +S      T +Y APEV+    ++  CD+WS+G I+  L  G   F  
Sbjct: 206 TDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS 265

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
            H       M  R+             R  +  F      +W                  
Sbjct: 266 NHGLAISPGMKTRI-------------RMGQYEFPNP---EWS----------------- 292

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                   V      LI   + LL+ +P +R+   E + HP+  +  +    PL
Sbjct: 293 -------EVSEEVKMLI---RNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPL 336

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score =  143 bits (363), Expect = 1e-38
 Identities = 73/354 (20%), Positives = 131/354 (37%), Gaps = 84/354 (23%)

Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI-EIDVLQ 143
               T  Y++  ++G+G F  V  C      +  A  I+  + ++      +  E  + +
Sbjct: 6   CTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICR 65

Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQ 202
            L   +I     V++ +      H  ++F+ + G  L++ +    Y  +         +Q
Sbjct: 66  LLKHPNI-----VRLHDSISEEGHHYLIFDLVTGGELFEDIVAREY--YSEADASHCIQQ 118

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +LE+V   H++ ++H +LKPEN+LL S                          K +A+KL
Sbjct: 119 ILEAVLHCHQMGVVHRNLKPENLLLASKL------------------------KGAAVKL 154

Query: 263 IDFG-STTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
            DFG +   E +  ++     T  Y +PEV+    +  P DLW+ G IL  L  G   F 
Sbjct: 155 ADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFW 214

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
             E+   L   +++                   F      +W                  
Sbjct: 215 -DEDQHRL--YQQIK-------------AGAYDFPSP---EWDT---------------- 239

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                   V   A DLI+    +L  +P++R+ A EAL+HP+ +          
Sbjct: 240 --------VTPEAKDLIN---KMLTINPSKRITAAEALKHPWISHRSTVASCMH 282

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score =  139 bits (352), Expect = 2e-38
 Identities = 71/350 (20%), Positives = 125/350 (35%), Gaps = 86/350 (24%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR-------SINKYREAAMIEIDV 141
            +   Y +  ++G G F  V +C      +  A K ++            RE    E+++
Sbjct: 2   MVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNI 61

Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELG 200
           L+ + RH       + + + F+ +  + ++ E + G  L+DFL +        D   +  
Sbjct: 62  LREI-RHP----NIITLHDIFENKTDVVLILELVSGGELFDFLAEKES--LTEDEATQFL 114

Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           +Q+L+ V ++H  R+ H DLKPENI+L+                            +  I
Sbjct: 115 KQILDGVHYLHSKRIAHFDLKPENIMLLDKN-----------------------VPNPRI 151

Query: 261 KLIDFG-STTFEH-QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
           KLIDFG +   E   +   +  T  + APE++         D+WS+G I   L SG + F
Sbjct: 152 KLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPF 211

Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
                 E    +  +                          D+ +           +   
Sbjct: 212 LGETKQE---TLTNIS---------------------AVNYDFDEEY---------FS-- 236

Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                   +    A D I   + LL  DP  R+   ++L H +     RR
Sbjct: 237 --------NTSELAKDFI---RRLLVKDPKRRMTIAQSLEHSWIKAIRRR 275

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score =  140 bits (354), Expect = 2e-38
 Identities = 72/365 (19%), Positives = 124/365 (33%), Gaps = 90/365 (24%)

Query: 68  TGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS 127
              PP             +G N    +RI  K+G G F +V           VA+K V+ 
Sbjct: 8   MQGPPVPQFQPQKALRPDMGYNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQI 67

Query: 128 IN----KYREAAMIEIDVLQRLARHD-IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYD 181
            +    K R   + EID+L++L  H  +     ++    F   N + IV E      L  
Sbjct: 68  FDLMDAKARADCIKEIDLLKQL-NHPNV-----IKYYASFIEDNELNIVLELADAGDLSR 121

Query: 182 FLR--KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK 239
            ++  K   R  P   V +   QL  ++  MH  R++H D+KP N+ +            
Sbjct: 122 MIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFI------------ 169

Query: 240 FLSRSSKDGSYFKNLPKSSAIKLIDFG-STTFEHQDH--SYVVSTRHYRAPEVILGLGWN 296
                +  G           +KL D G    F  +      +V T +Y +PE I   G+N
Sbjct: 170 -----TATGV----------VKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYN 214

Query: 297 YPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRG 356
           +  D+WS+GC+L E+ + ++ F   + +   ++ +++                     + 
Sbjct: 215 FKSDIWSLGCLLYEMAALQSPFYG-DKMNLYSLCKKIE--------------------QC 253

Query: 357 ARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREA 416
                P    S                          +L  L+   +  DP +R      
Sbjct: 254 DYPPLPSDHYSE-------------------------ELRQLVNMCINPDPEKRPDVTYV 288

Query: 417 LRHPF 421
                
Sbjct: 289 YDVAK 293

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score =  143 bits (362), Expect = 2e-38
 Identities = 84/360 (23%), Positives = 144/360 (40%), Gaps = 52/360 (14%)

Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           +    +  Y   +G++   +  RY+ L  +G G  G V   +D      VAIK + R   
Sbjct: 41  KSKVDNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ 100

Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ +++ +  H   I        +   +    + +V E +  +L   ++ 
Sbjct: 101 NQTHAKRAYRELVLMKCV-NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQM 159

Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   + +  L  Q+L  +  +H   +IH DLKP NI++ S                
Sbjct: 160 E----LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKS---------------- 199

Query: 246 KDGSYFKNLPKSSAIKLIDFG-STTFEHQDHS--YVVSTRHYRAPEVILGLGWNYPCDLW 302
                         +K++DFG + T         YVV TR+YRAPEVILG+G+    D+W
Sbjct: 200 -----------DCTLKILDFGLARTAGTSFMMTPYVV-TRYYRAPEVILGMGYKENVDIW 247

Query: 303 SVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP 362
           SVGCI+ E+   + LF   + ++    +   LG      + +       Y     +    
Sbjct: 248 SVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPK---- 303

Query: 363 DGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
               +  +   ++     P    +H    A    DLL  +L  DPA+R+   +AL+HP+ 
Sbjct: 304 ---YAGLTFPKLFPDSLFPADS-EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYI 359

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  144 bits (366), Expect = 2e-38
 Identities = 78/342 (22%), Positives = 121/342 (35%), Gaps = 81/342 (23%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY-REAAMIEIDVLQRLA 146
           +++   Y I  ++G G FG V    +       A K V + ++  +E    EI  +  L 
Sbjct: 153 DHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL- 211

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           RH       V + + F+  N + +++E + G  L++ +          D   E  RQ+ +
Sbjct: 212 RHP----TLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHN-KMSEDEAVEYMRQVCK 266

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            +  MHE   +H DLKPENI+  +                          +S+ +KLIDF
Sbjct: 267 GLCHMHENNYVHLDLKPENIMFTT-------------------------KRSNELKLIDF 301

Query: 266 GSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
           G T       S      T  + APEV  G    Y  D+WSVG +   L SG + F    +
Sbjct: 302 GLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND 361

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
            E    +  V                          +  D A         +        
Sbjct: 362 DE---TLRNVK---------------------SCDWNMDDSA---------FS------- 381

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
               +     D I     LL  DP  R+   +AL HP+ T  
Sbjct: 382 ---GISEDGKDFIR---KLLLADPNTRMTIHQALEHPWLTPG 417

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score =  140 bits (354), Expect = 3e-38
 Identities = 68/348 (19%), Positives = 125/348 (35%), Gaps = 86/348 (24%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR-------SINKYREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 7   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 66

Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ +   ++     + +   ++ +  + ++ E + G  L+DFL +        +   E 
Sbjct: 67  ILKEIQHPNV-----ITLHEVYENKTDVILILELVAGGELFDFLAEKES--LTEEEATEF 119

Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                               
Sbjct: 120 LKQILNGVYYLHSLQIAHFDLKPENIMLLDRN-----------------------VPKPR 156

Query: 260 IKLIDFG-STTFEH-QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
           IK+IDFG +   +   +   +  T  + APE++         D+WS+G I   L SG + 
Sbjct: 157 IKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216

Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
           F      E    +  V                          ++ D           +  
Sbjct: 217 FLGDTKQE---TLANVS---------------------AVNYEFEDEY---------FS- 242

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                    +    A D I   + LL  DP +R+  +++L+HP+    
Sbjct: 243 ---------NTSALAKDFI---RRLLVKDPKKRMTIQDSLQHPWIKPK 278

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score =  138 bits (351), Expect = 3e-38
 Identities = 72/350 (20%), Positives = 126/350 (36%), Gaps = 89/350 (25%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR------EAAMIEIDV 141
              +  Y +  ++G+G F  V  C         A KI   IN  +      +    E  +
Sbjct: 2   TKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKI---INTKKLSARDFQKLEREARI 58

Query: 142 LQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELG 200
            ++L   +I     V++ +     +   +VF+ + G  L++ +    +  +         
Sbjct: 59  CRKLQHPNI-----VRLHDSIQEESFHYLVFDLVTGGELFEDIVAREF--YSEADASHCI 111

Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           +Q+LES+A+ H   ++H +LKPEN+LL S                          K +A+
Sbjct: 112 QQILESIAYCHSNGIVHRNLKPENLLLASKA------------------------KGAAV 147

Query: 261 KLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
           KL DFG     +   ++     T  Y +PEV+    ++ P D+W+ G IL  L  G   F
Sbjct: 148 KLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPF 207

Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
              E+     +  ++                          D+P            W   
Sbjct: 208 -WDED--QHRLYAQIK---------------------AGAYDYPS---------PEWD-- 232

Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                    V   A  LID    +L  +P +R+ A +AL+ P+     R 
Sbjct: 233 --------TVTPEAKSLID---SMLTVNPKKRITADQALKVPWICNRERV 271

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score =  139 bits (353), Expect = 4e-38
 Identities = 74/349 (21%), Positives = 128/349 (36%), Gaps = 88/349 (25%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR-------SINKYREAAMIEID 140
           + +   Y I  ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 8   QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVS 67

Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFL-RKNSYRSFPIDLVRE 198
           +L+++  H++     + + + ++ R  + ++ E + G  L+DFL +K S      +    
Sbjct: 68  ILRQVLHHNV-----ITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSE---EEATS 119

Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
             +Q+L+ V ++H  ++ H DLKPENI+L+                              
Sbjct: 120 FIKQILDGVNYLHTKKIAHFDLKPENIMLLDKN-----------------------IPIP 156

Query: 259 AIKLIDFG-STTFEHQDH-SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA 316
            IKLIDFG +   E       +  T  + APE++         D+WS+G I   L SG +
Sbjct: 157 HIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS 216

Query: 317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK 376
            F      E    +  +                          D+ +           + 
Sbjct: 217 PFLGDTKQE---TLANIT---------------------SVSYDFDEEF---------FS 243

Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                     H    A D I   + LL  +  +RL  +EALRHP+ T  
Sbjct: 244 ----------HTSELAKDFI---RKLLVKETRKRLTIQEALRHPWITPV 279

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score =  140 bits (354), Expect = 5e-38
 Identities = 70/348 (20%), Positives = 124/348 (35%), Gaps = 86/348 (24%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR-------SINKYREAAMIEID 140
           + +   Y I  ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 8   QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVS 67

Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+++   +I     + + + ++ R  + ++ E + G  L+DFL +        +     
Sbjct: 68  ILRQVLHPNI-----ITLHDVYENRTDVVLILELVSGGELFDFLAQKES--LSEEEATSF 120

Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L+ V ++H  ++ H DLKPENI+L+                               
Sbjct: 121 IKQILDGVNYLHTKKIAHFDLKPENIMLLDKN-----------------------IPIPH 157

Query: 260 IKLIDFG-STTFEHQDH-SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
           IKLIDFG +   E       +  T  + APE++         D+WS+G I   L SG + 
Sbjct: 158 IKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 217

Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
           F   +       +  +                          D+ +           +  
Sbjct: 218 FL-GDT--KQETLANIT---------------------AVSYDFDEEF---------FS- 243

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                         A D I   + LL  +  +RL  +EALRHP+ T  
Sbjct: 244 ---------QTSELAKDFI---RKLLVKETRKRLTIQEALRHPWITPV 279

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score =  139 bits (353), Expect = 1e-37
 Identities = 88/360 (24%), Positives = 145/360 (40%), Gaps = 52/360 (14%)

Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
           R    +  Y   IG++   +  RY+ L  +G G  G V   +D   +  VAIK + R   
Sbjct: 4   RSKRDNNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ 63

Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ +++ +  H   IG       +   +    + IV E +  +L   ++ 
Sbjct: 64  NQTHAKRAYRELVLMKCV-NHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQM 122

Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                     +  L  Q+L  +  +H   +IH DLKP NI++ S                
Sbjct: 123 ELDHER----MSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKS---------------- 162

Query: 246 KDGSYFKNLPKSSAIKLIDFG---STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLW 302
                         +K++DFG   +         YVV TR+YRAPEVILG+G+    D+W
Sbjct: 163 -----------DCTLKILDFGLARTAGTSFMMTPYVV-TRYYRAPEVILGMGYKENVDIW 210

Query: 303 SVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP 362
           SVGCI+ E+  G  LF   ++++    +   LG      + +       Y     +    
Sbjct: 211 SVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPK---- 266

Query: 363 DGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
               +  S   ++  +  P    +H    A    DLL  +L  D ++R+   EAL+HP+ 
Sbjct: 267 ---YAGYSFEKLFPDVLFPADS-EHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYI 322

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score =  139 bits (352), Expect = 1e-37
 Identities = 91/356 (25%), Positives = 141/356 (39%), Gaps = 68/356 (19%)

Query: 81  HYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--E 138
             V     ++ PRY  LS +GEG +G V   +DN  K  VAIK +              E
Sbjct: 16  EMVRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLRE 75

Query: 139 IDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE 198
           I +L R    +I G   +      +    + IV + +   LY  L+         D +  
Sbjct: 76  IKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQH---LSNDHICY 132

Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+L  + ++H   ++H DLKP N+LL +                           + 
Sbjct: 133 FLYQILRGLKYIHSANVLHRDLKPSNLLLNT---------------------------TC 165

Query: 259 AIKLIDFG--STTFEHQDHS-----YVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVE 310
            +K+ DFG         DH+     YV  TR YRAPE++L   G+    D+WSVGCIL E
Sbjct: 166 DLKICDFGLARVADPDHDHTGFLTEYVA-TRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 224

Query: 311 LCSGEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFR---RGARLDWPDGAT 366
           + S   +F     L+ L  +  +LG P    +    + +A  Y        ++ W     
Sbjct: 225 MLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNR--- 281

Query: 367 SRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                         PN      D  A   +DLL  +L ++P +R++  +AL HP+ 
Sbjct: 282 ------------LFPN-----ADSKA---LDLLDKMLTFNPHKRIEVEQALAHPYL 317

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score =  138 bits (350), Expect = 2e-37
 Identities = 91/363 (25%), Positives = 147/363 (40%), Gaps = 69/363 (19%)

Query: 74  RPDDKDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSIN 129
            P  + G Y   + +    +   YR L  +G G +G V    D      VAIK + R   
Sbjct: 4   PPPARSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ 63

Query: 130 KYREA--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK 185
               A  A  E+ +L+ + RH+  IG           D      +V   +G  L   ++ 
Sbjct: 64  SELFAKRAYRELRLLKHM-RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKH 122

Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
                   D ++ L  Q+L+ + ++H   +IH DLKP N+ +                  
Sbjct: 123 EKLGE---DRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNE---------------- 163

Query: 246 KDGSYFKNLPKSSAIKLIDFG-STTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWS 303
                         +K++DFG +   + +   YVV TR YRAPEVIL    +    D+WS
Sbjct: 164 -----------DCELKILDFGLARQADSEMTGYVV-TRWYRAPEVILNWMRYTQTVDIWS 211

Query: 304 VGCILVELCSGEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFR---RGARL 359
           VGCI+ E+ +G+ LF+  ++L+ L  + +V G P    +       A+ Y +      + 
Sbjct: 212 VGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKK 271

Query: 360 DWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH 419
           D+                  L N         A   ++LL+ +L  D  +R+ A EAL H
Sbjct: 272 DFAS---------------ILTN-----ASPLA---VNLLEKMLVLDAEQRVTAGEALAH 308

Query: 420 PFF 422
           P+F
Sbjct: 309 PYF 311

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score =  138 bits (350), Expect = 2e-37
 Identities = 90/359 (25%), Positives = 144/359 (40%), Gaps = 70/359 (19%)

Query: 78  KDGHYVFAIGENL---TPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYRE 133
           K G Y   + +        Y   + +G G +G V    D    E VAIK + R       
Sbjct: 7   KKGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIF 66

Query: 134 A--AMIEIDVLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYR 189
           A  A  E+ +L+ + +H+  IG        +         +V   +   L   +      
Sbjct: 67  AKRAYRELLLLKHM-QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGLK--- 122

Query: 190 SFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS 249
            F  + ++ L  Q+L+ + ++H   ++H DLKP N+ +                      
Sbjct: 123 -FSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNE-------------------- 161

Query: 250 YFKNLPKSSAIKLIDFG-STTFEHQDHSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCI 307
                     +K++DFG +   + +   YVV TR YRAPEVIL     N   D+WSVGCI
Sbjct: 162 -------DCELKILDFGLARHADAEMTGYVV-TRWYRAPEVILSWMHYNQTVDIWSVGCI 213

Query: 308 LVELCSGEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFR---RGARLDWPD 363
           + E+ +G+ LF+  + L+ L  + +V G P    +    D+ A+ Y +   +  R D+  
Sbjct: 214 MAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQ 273

Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                            P          A    DLL+ +L  D  +RL A +AL HPFF
Sbjct: 274 ---------------LFPR-----ASPQA---ADLLEKMLELDVDKRLTAAQALTHPFF 309

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score =  139 bits (352), Expect = 2e-37
 Identities = 80/370 (21%), Positives = 139/370 (37%), Gaps = 87/370 (23%)

Query: 93  RYRILS-KMGEGTFGQV--VECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD 149
            +     K+G GT+G V   +  D +  +  A+K +        +A  EI +L+ L +H 
Sbjct: 21  LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG-ISMSACREIALLREL-KHP 78

Query: 150 -IGGTRCVQIRNWFDYRNHICI--VFE-------KLGPSLYDFLRKNSYRSFPIDLVREL 199
            +     + ++  F       +  +F+        +                P  +V+ L
Sbjct: 79  NV-----ISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSL 133

Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
             Q+L+ + ++H   ++H DLKP NIL++                          P+   
Sbjct: 134 LYQILDGIHYLHANWVLHRDLKPANILVMGEG-----------------------PERGR 170

Query: 260 IKLIDFG-STTFEHQDHSY-----VVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVEL 311
           +K+ D G +  F            VV T  YRAPE++LG   +Y    D+W++GCI  EL
Sbjct: 171 VKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLG-ARHYTKAIDIWAIGCIFAEL 229

Query: 312 CSGEALFQ---------THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP 362
            + E +F             + + L  +  V+G  P           +K        DW 
Sbjct: 230 LTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGF-PA----------DK--------DWE 270

Query: 363 D-------GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKARE 415
           D           +D  R  +    L   + +H          LLQ LL  DP +R+ + +
Sbjct: 271 DIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQ 330

Query: 416 ALRHPFFTRD 425
           A++ P+F  D
Sbjct: 331 AMQDPYFLED 340

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score =  138 bits (349), Expect = 5e-37
 Identities = 60/345 (17%), Positives = 111/345 (32%), Gaps = 69/345 (20%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHD- 149
            + +   +G+G    V      +  +L AIK+    S  +  +  M E +VL++L  H  
Sbjct: 10  LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL-NHKN 68

Query: 150 IGGTRCVQIRNWFDYRN--HICIVFEKL-GPSLYDFLRKN-SYRSFPIDLVRELGRQLLE 205
           I     V++    +     H  ++ E     SLY  L +  +    P      + R ++ 
Sbjct: 69  I-----VKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVG 123

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            +  + E  ++H ++KP NI+ V  E                          S  KL DF
Sbjct: 124 GMNHLRENGIVHRNIKPGNIMRVIGE-----------------------DGQSVYKLTDF 160

Query: 266 G-STTFEHQDHSY-VVSTRHYRAPEVILGLGWNYP--------CDLWSVGCILVELCSGE 315
           G +   E  +    +  T  Y  P++                  DLWS+G       +G 
Sbjct: 161 GAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGS 220

Query: 316 ALFQTHENLEHLA-MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
             F+  E       +M +++   P   +      +         +DW        S+   
Sbjct: 221 LPFRPFEGPRRNKEVMYKIITGKPSGAI------SGVQKAENGPIDWSGDMPVSCSLSRG 274

Query: 375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH 419
            ++L                L  +L  +L  D  +     +    
Sbjct: 275 LQVL----------------LTPVLANILEADQEKCWGFDQFFAE 303

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score =  137 bits (348), Expect = 5e-37
 Identities = 79/370 (21%), Positives = 132/370 (35%), Gaps = 79/370 (21%)

Query: 78  KDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREA 134
           K    +  +      +   Y +   +  G++G V    D+E    VAIK V +       
Sbjct: 5   KGEAAMRDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEG-IPVAIKRVFNTVSDGRT 63

Query: 135 AMI------------EIDVLQRLARHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYD 181
             I            EI +L     H  I G R + +       + + +V E +   L  
Sbjct: 64  VNILSDSFLCKRVLREIRLLNHF-HHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQ 122

Query: 182 FLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL 241
            +            ++     +L  +  +HE  ++H DL P NILL              
Sbjct: 123 VIHDQR-IVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLAD------------ 169

Query: 242 SRSSKDGSYFKNLPKSSAIKLIDFG---STTFEHQDHSYVVSTRHYRAPEVILGL-GWNY 297
                          ++ I + DF      T +     YV   R YRAPE+++   G+  
Sbjct: 170 ---------------NNDITICDFNLAREDTADANKTHYVT-HRWYRAPELVMQFKGFTK 213

Query: 298 PCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRG 356
             D+WS GC++ E+ + +ALF+       L  +  V+G P    +V+ +   A  Y R  
Sbjct: 214 LVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNS 273

Query: 357 ----ARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLK 412
                   W                  +P       D  A   +DL+  +L ++P  R+ 
Sbjct: 274 LSNVPARAWTA---------------VVPT-----ADPVA---LDLIAKMLEFNPQRRIS 310

Query: 413 AREALRHPFF 422
             +ALRHP+F
Sbjct: 311 TEQALRHPYF 320

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score =  139 bits (351), Expect = 5e-37
 Identities = 86/353 (24%), Positives = 137/353 (38%), Gaps = 92/353 (26%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV-------RSINKYREAAMI--E 138
           + L   Y +   +G G  G+V   F+ +  + VAI+I+        S  +   A  +  E
Sbjct: 131 KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETE 190

Query: 139 IDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVR 197
           I++L++L  H       ++I+N+FD      IV E + G  L+D +  N          +
Sbjct: 191 IEILKKL-NHP----CIIKIKNFFD-AEDYYIVLELMEGGELFDKVVGNKR--LKEATCK 242

Query: 198 ELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKS 257
               Q+L +V ++HE  +IH DLKPEN+LL S E                        + 
Sbjct: 243 LYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQE------------------------ED 278

Query: 258 SAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELC 312
             IK+ DFG +    +      +  T  Y APEV++ +   G+N   D WS+G IL    
Sbjct: 279 CLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICL 338

Query: 313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
           SG   F  H     +++ +++                        + ++           
Sbjct: 339 SGYPPFSEHRT--QVSLKDQIT---------------------SGKYNFIP--------- 366

Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
            VW            V   A DL+     LL  DP  R    EALRHP+   +
Sbjct: 367 EVWA----------EVSEKALDLVK---KLLVVDPKARFTTEEALRHPWLQDE 406

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score =  137 bits (347), Expect = 6e-37
 Identities = 88/434 (20%), Positives = 144/434 (33%), Gaps = 112/434 (25%)

Query: 10  PHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTG 69
             +++    R++ R         P            +  N   P    +  F    P   
Sbjct: 25  EIRHLPNLNREQRRAFIRSLRDDPSQSANLLA--EAKKLNDAQPKGTENLYFQSMGPEDE 82

Query: 70  SPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV---- 125
            P W              +    +Y     +G G    V  C         A+KI+    
Sbjct: 83  LPDWAA-----------AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTA 131

Query: 126 -----RSINKYREAAMIEIDVLQRLARHD-IGGTRCVQIRNWFDYRNHICIVFEKL-GPS 178
                  + + REA   E  +L+++A H  I     + + + ++  + + +VF+ +    
Sbjct: 132 ERLSPEQLEEVREATRRETHILRQVAGHPHI-----ITLIDSYESSSFMFLVFDLMRKGE 186

Query: 179 LYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY 238
           L+D+L +           R + R LLE+V+F+H   ++H DLKPENILL           
Sbjct: 187 LFDYLTEKVA--LSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDD--------- 235

Query: 239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGL--- 293
                             +  I+L DFG +           +  T  Y APE++      
Sbjct: 236 ------------------NMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDE 277

Query: 294 ---GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAE 350
              G+    DLW+ G IL  L +G   F  H     + M+  ++                
Sbjct: 278 THPGYGKEVDLWACGVILFTLLAGSPPF-WHRR--QILMLRMIM---------------- 318

Query: 351 KYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER 410
                  +  +             W               +  DLI     LL+ DP  R
Sbjct: 319 -----EGQYQFSSP---------EWD----------DRSSTVKDLIS---RLLQVDPEAR 351

Query: 411 LKAREALRHPFFTR 424
           L A +AL+HPFF R
Sbjct: 352 LTAEQALQHPFFER 365

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score =  134 bits (340), Expect = 2e-36
 Identities = 78/358 (21%), Positives = 125/358 (34%), Gaps = 100/358 (27%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV----------RSINKYREAAMI 137
                 Y     +G G    V  C      +  A+KI+            + + REA + 
Sbjct: 13  HGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLK 72

Query: 138 EIDVLQRLARHD-IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDL 195
           E+D+L++++ H  I     +Q+++ ++      +VF+ +    L+D+L +          
Sbjct: 73  EVDILRKVSGHPNI-----IQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVT--LSEKE 125

Query: 196 VRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLP 255
            R++ R LLE +  +H+L ++H DLKPENILL                            
Sbjct: 126 TRKIMRALLEVICALHKLNIVHRDLKPENILLDD-------------------------- 159

Query: 256 KSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGL------GWNYPCDLWSVGCI 307
               IKL DFG +           V  T  Y APE+I         G+    D+WS G I
Sbjct: 160 -DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVI 218

Query: 308 LVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATS 367
           +  L +G   F  H     + M+  ++                  F      +W      
Sbjct: 219 MYTLLAGSPPF-WHRK--QMLMLRMIM-------------SGNYQFGSP---EWD----- 254

Query: 368 RDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                                  +  DL+      L   P +R  A EAL HPFF + 
Sbjct: 255 -------------------DYSDTVKDLVS---RFLVVQPQKRYTAEEALAHPFFQQY 290

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score =  133 bits (338), Expect = 2e-36
 Identities = 62/355 (17%), Positives = 114/355 (32%), Gaps = 103/355 (29%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD 149
            Y +L  +G G++G+  +       +++  K +   +     ++  + E+++L+ L +H 
Sbjct: 7   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL-KHP 65

Query: 150 -IGGTRCVQIRNWFDYR--NHICIVFEKL-GPSLYDFLR--KNSYRSFPIDLVRELGRQL 203
            I     V+  +    R    + IV E   G  L   +       +    + V  +  QL
Sbjct: 66  NI-----VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQL 120

Query: 204 LESVAFMHELRL-----IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
             ++   H         +H DLKP N+ L                     +         
Sbjct: 121 TLALKECHRRSDGGHTVLHRDLKPANVFL-----------------DGKQN--------- 154

Query: 259 AIKLIDFG-STTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
            +KL DFG +    H        V T +Y +PE +  + +N   D+WS+GC+L ELC+  
Sbjct: 155 -VKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALM 213

Query: 316 ALFQTHENLEHLAM--MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
             F    + + LA    E     +P+                           S      
Sbjct: 214 PPFTA-FSQKELAGKIREGKFRRIPYRY-------------------------SD----- 242

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                               +L +++  +L      R    E L +P        
Sbjct: 243 --------------------ELNEIITRMLNLKDYHRPSVEEILENPLILEHHHH 277

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score =  134 bits (340), Expect = 3e-36
 Identities = 91/352 (25%), Positives = 138/352 (39%), Gaps = 94/352 (26%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMI-----E 138
           + L   Y +   +G G  G+V   F+ +  + VAIKI+     +I   REA        E
Sbjct: 6   KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETE 65

Query: 139 IDVLQRLARH-DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLV 196
           I++L++L  H  I     ++I+N+FD  ++  IV E + G  L+D +  N          
Sbjct: 66  IEILKKL-NHPCI-----IKIKNFFDAEDYY-IVLELMEGGELFDKVVGNKR--LKEATC 116

Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
           +    Q+L +V ++HE  +IH DLKPEN+LL S E                        +
Sbjct: 117 KLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQE------------------------E 152

Query: 257 SSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVEL 311
              IK+ DFG +    +      +  T  Y APEV++ +   G+N   D WS+G IL   
Sbjct: 153 DCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 212

Query: 312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSM 371
            SG   F  H     L   +++                        + ++          
Sbjct: 213 LSGYPPFSEHRTQVSL--KDQIT---------------------SGKYNFIP-------- 241

Query: 372 RAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
             VW            V   A DL+     LL  DP  R    EALRHP+  
Sbjct: 242 -EVWA----------EVSEKALDLVK---KLLVVDPKARFTTEEALRHPWLQ 279

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score =  140 bits (353), Expect = 3e-36
 Identities = 69/339 (20%), Positives = 112/339 (33%), Gaps = 59/339 (17%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHD- 149
            + +  ++G G FG V+     +  E VAIK  R     K RE   +EI ++++L  H  
Sbjct: 15  PWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL-NHPN 73

Query: 150 -IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRS-FPIDLVRELGRQLLES 206
            +               +   +  E   G  L  +L +           +R L   +  +
Sbjct: 74  VVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSA 133

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++HE R+IH DLKPENI+L                            +    K+ID G
Sbjct: 134 LRYLHENRIIHRDLKPENIVLQPGP------------------------QRLIHKIIDLG 169

Query: 267 -STTFEHQDH-SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
            +   +  +  +  V T  Y APE++    +    D WS G +  E  +G   F  +   
Sbjct: 170 YAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ- 228

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
                      P+  H  +R     EK        D   GA    S+      L      
Sbjct: 229 -----------PVQWHGKVR-----EKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAG 272

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                         LQ +L +   +R    +      F 
Sbjct: 273 KLE---------RWLQCMLMWHQRQRGTDPQNPNVGCFQ 302

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score =  135 bits (341), Expect = 5e-36
 Identities = 82/350 (23%), Positives = 147/350 (42%), Gaps = 76/350 (21%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--------YREAAMIEID 140
            +  RY+ LS +G G +G V   FD +    VA+K +    +        YRE     + 
Sbjct: 26  EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRE-----LR 80

Query: 141 VLQRLARHD--IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRE 198
           +L+ + +H+  IG           +  N + +V   +G  L + ++         D V+ 
Sbjct: 81  LLKHM-KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTD---DHVQF 136

Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
           L  Q+L  + ++H   +IH DLKP N+ +                               
Sbjct: 137 LIYQILRGLKYIHSADIIHRDLKPSNLAVNE---------------------------DC 169

Query: 259 AIKLIDFG-STTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEA 316
            +K++DFG +     +   YV  TR YRAPE++L    +N   D+WSVGCI+ EL +G  
Sbjct: 170 ELKILDFGLARHTADEMTGYVA-TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 228

Query: 317 LFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFR---RGARLDWPDGATSRDSMR 372
           LF   ++++ L ++ R++G P    +   +   A  Y +   +  ++++ +         
Sbjct: 229 LFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFAN--------- 279

Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                           +  A   +DLL+ +L  D  +R+ A +AL H +F
Sbjct: 280 ------VFIG-----ANPLA---VDLLEKMLVLDSDKRITAAQALAHAYF 315

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score =  133 bits (336), Expect = 2e-35
 Identities = 42/364 (11%), Positives = 85/364 (23%), Gaps = 100/364 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--------INKYREAAMIEIDVLQR 144
           + +++  +  G    V    D E+ E  A+K+           + +  EA      +L  
Sbjct: 63  KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGE 122

Query: 145 LARHDIGGTRCVQIRNWFDYRNH-----------------ICIVFEKLGPSLYDFLRKNS 187
                    R +   +    ++                    ++       L        
Sbjct: 123 SPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLD 182

Query: 188 YRS-----FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS 242
           +         I  +  L  QL+   A +    L+H    P+N+ +               
Sbjct: 183 FVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFI--------------- 227

Query: 243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNY--PCD 300
               DG           + L D  +                Y   E +      +    +
Sbjct: 228 --MPDGR----------LMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALN 275

Query: 301 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD 360
            W +G  +  +      F                       +  + +R          L 
Sbjct: 276 AWQLGLSIYRVWCLFLPFGLVTP-----------------GIKGSWKRPSLRVPGTDSLA 318

Query: 361 WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP 420
           +       D ++                         L+   L +D   RL   EA+  P
Sbjct: 319 FGSCTPLPDFVK------------------------TLIGRFLNFDRRRRLLPLEAMETP 354

Query: 421 FFTR 424
            F +
Sbjct: 355 EFLQ 358

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score =  133 bits (337), Expect = 2e-35
 Identities = 84/360 (23%), Positives = 134/360 (37%), Gaps = 83/360 (23%)

Query: 70  SPPWRPDDKDGHYVFAIGENLTPRYRILSK--MGEGTFGQVVECFDNEKKELVAIKIVR- 126
             P  P   D   V A    +   Y +     +G G FGQV +C +      +A KI++ 
Sbjct: 65  DIPAPPAPFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKT 124

Query: 127 SINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRK 185
              K +E    EI V+ +L  H       +Q+ + F+ +N I +V E + G  L+D +  
Sbjct: 125 RGMKDKEEVKNEISVMNQL-DHA----NLIQLYDAFESKNDIVLVMEYVDGGELFDRIID 179

Query: 186 NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS 245
            SY +          +Q+ E +  MH++ ++H DLKPENIL V+                
Sbjct: 180 ESY-NLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVN---------------- 222

Query: 246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWS 303
                      +  IK+IDFG                T  + APEV+     ++P D+WS
Sbjct: 223 ---------RDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWS 273

Query: 304 VGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPD 363
           VG I   L SG + F    + E    +  +L                         ++ D
Sbjct: 274 VGVIAYMLLSGLSPFLGDNDAE---TLNNIL-------------ACRWDLEDE---EFQD 314

Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                                   +   A + I     LL  + + R+ A EAL+HP+ +
Sbjct: 315 ------------------------ISEEAKEFI---SKLLIKEKSWRISASEALKHPWLS 347

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score =  134 bits (339), Expect = 3e-35
 Identities = 86/372 (23%), Positives = 144/372 (38%), Gaps = 67/372 (18%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIK-IVRSINKYREAAMI--EIDVLQRL 145
           ++   Y I   +G G++G V   +D   ++ VAIK + R      +   I  EI +L RL
Sbjct: 23  HVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRL 82

Query: 146 ARHD-IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
            + D I     + I +     + + IV E     L    +   + +   + ++ +   LL
Sbjct: 83  -KSDYIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKTPIFLT--EEHIKTILYNLL 139

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKLI 263
               F+HE  +IH DLKP N LL     VKV D  F L+R+         +      +  
Sbjct: 140 LGENFIHESGIIHRDLKPANCLLNQDCSVKVCD--FGLARTINSEKDTNIVNDLEENEEP 197

Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSG-------- 314
              +   + Q  S+VV TR YRAPE+IL    +    D+WS GCI  EL +         
Sbjct: 198 GPHNKNLKKQLTSHVV-TRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDP 256

Query: 315 ---EALFQ-----------------THENLEHLAMMERVLG-PLPHHMVIRADRRAEKYF 353
                LF                     N + L ++  ++G P    +         KY 
Sbjct: 257 TNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYI 316

Query: 354 R---RGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER 410
           +       ++                  + P+     +       I+LL+ +L+++P +R
Sbjct: 317 KLFPHRKPINLKQ---------------KYPS-----ISDDG---INLLESMLKFNPNKR 353

Query: 411 LKAREALRHPFF 422
           +   +AL HP+ 
Sbjct: 354 ITIDQALDHPYL 365

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score =  130 bits (329), Expect = 1e-34
 Identities = 67/338 (19%), Positives = 103/338 (30%), Gaps = 93/338 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
                 ++G G+FG+V    D +     A+K VR         + E+     L       
Sbjct: 59  WMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVR----LEVFRVEELVACAGL-SSP--- 110

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
            R V +         + I  E L G SL   +++      P D       Q LE + ++H
Sbjct: 111 -RIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQ--MGCLPEDRALYYLGQALEGLEYLH 167

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG----- 266
             R++H D+K +N+LL                 S DGS            L DFG     
Sbjct: 168 TRRILHGDVKADNVLL-----------------SSDGS---------RAALCDFGHALCL 201

Query: 267 ---STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
                        Y+  T  + APEV++G   +   D+WS  C+++ + +G         
Sbjct: 202 QPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGC-------- 253

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
                         P                      W              K+   P  
Sbjct: 254 ------------H-P----------------------WTQ----YFRGPLCLKIASEPPP 274

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
           I +     A      +Q  LR +P  R  A E  R   
Sbjct: 275 IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVG 312

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score =  128 bits (324), Expect = 3e-34
 Identities = 70/354 (19%), Positives = 130/354 (36%), Gaps = 103/354 (29%)

Query: 88  ENLTPRYRILSKM-GEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA 146
             +   Y++ S++ G G  G+V++ F+   +E  A+K+++   K R     E+++  R +
Sbjct: 13  NAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRAS 68

Query: 147 RHD-IGGTRCVQIRNWFD----YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELG 200
           +   I     V+I + ++     R  + IV E L G  L+  ++    ++F      E+ 
Sbjct: 69  QCPHI-----VRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIM 123

Query: 201 RQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           + + E++ ++H + + H D+KPEN+L  S                           ++ +
Sbjct: 124 KSIGEAIQYLHSINIAHRDVKPENLLYTSKR------------------------PNAIL 159

Query: 261 KLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ- 319
           KL DFG                   A E   G  ++  CD+WS+G I+  L  G   F  
Sbjct: 160 KLTDFG------------------FAKET-TGEKYDKSCDMWSLGVIMYILLCGYPPFYS 200

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
            H       M  R+                +  F      +W                  
Sbjct: 201 NHGLAISPGMKTRIR-------------MGQYEFPNP---EWS----------------- 227

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                   V      LI   + LL+ +P +R+   E + HP+  +  +    PL
Sbjct: 228 -------EVSEEVKMLI---RNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPL 271

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score =  128 bits (324), Expect = 4e-34
 Identities = 65/358 (18%), Positives = 111/358 (31%), Gaps = 108/358 (30%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY-REAAMIEIDVLQRLARHD-I 150
            Y  + K+GEG F  V            A+K +    +  RE A  E D+ +    H  I
Sbjct: 30  HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLF-NHPNI 88

Query: 151 GGTRCVQIRNWF----DYRNHICIVFE--KLGPSLYDFL--RKNSYRSFPIDLVRELGRQ 202
                +++  +       ++   ++    K G +L++ +   K+       D +  L   
Sbjct: 89  -----LRLVAYCLRERGAKHEAWLLLPFFKRG-TLWNEIERLKDKGNFLTEDQILWLLLG 142

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +   +  +H     H DLKP NILL                   +G             L
Sbjct: 143 ICRGLEAIHAKGYAHRDLKPTNILL-----------------GDEGQP----------VL 175

Query: 263 IDFGSTTFEH------------QDHSYVVSTRHYRAPEVI---LGLGWNYPCDLWSVGCI 307
           +D GS                 QD +    T  YRAPE+         +   D+WS+GC+
Sbjct: 176 MDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCV 235

Query: 308 LVELCSGEALFQ-THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGAT 366
           L  +  GE  +    +  + +A            + ++             +L  P    
Sbjct: 236 LYAMMFGEGPYDMVFQKGDSVA------------LAVQN------------QLSIPQSPR 271

Query: 367 SRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                                  HS+  L  LL  ++  DP +R      L      +
Sbjct: 272 -----------------------HSS-ALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ 305

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score =  125 bits (317), Expect = 3e-33
 Identities = 79/349 (22%), Positives = 128/349 (36%), Gaps = 94/349 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARH 148
           RY     +G+G F +  E  D + KE+ A KIV    + K  +   +  EI + + L  H
Sbjct: 16  RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSL-AH 74

Query: 149 -DIGGTRCVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             +     V    +F+  + + +V E     SL +  ++   ++      R   RQ++  
Sbjct: 75  QHV-----VGFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQIVLG 127

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
             ++H  R+IH DLK  N+ L                 ++D            +K+ DFG
Sbjct: 128 CQYLHRNRVIHRDLKLGNLFL-----------------NEDLE----------VKIGDFG 160

Query: 267 -STTFEHQDHSYVVS--TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
            +T  E+      V   T +Y APEV+   G ++  D+WS+GCI+  L  G+  F+T   
Sbjct: 161 LATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFET-SC 219

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           L+      R+                     +      P                     
Sbjct: 220 LK--ETYLRI---------------------KKNEYSIPK-------------------- 236

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
              H++  A  LI   Q +L+ DP  R    E L   FFT        P
Sbjct: 237 ---HINPVAASLI---QKMLQTDPTARPTINELLNDEFFTSGYIPARLP 279

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  125 bits (316), Expect = 3e-33
 Identities = 66/342 (19%), Positives = 130/342 (38%), Gaps = 93/342 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARH 148
            +++ + +G+G+F  V           VAIK++  +++ K      +  E+ +  +L +H
Sbjct: 12  DFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQL-KH 70

Query: 149 -DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             I     +++ N+F+  N++ +V E      +  +L+    + F  +  R    Q++  
Sbjct: 71  PSI-----LELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRV-KPFSENEARHFMHQIITG 124

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H   ++H DL   N+LL                 +++ +          IK+ DFG
Sbjct: 125 MLYLHSHGILHRDLTLSNLLL-----------------TRNMN----------IKIADFG 157

Query: 267 -STTFEHQDHSYVVS--TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
            +T  +     +     T +Y +PE+          D+WS+GC+   L  G   F T + 
Sbjct: 158 LATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDT-DT 216

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           +++                            +    D                   +P+ 
Sbjct: 217 VKNT-------------------------LNKVVLAD-----------------YEMPS- 233

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
               +   A DLI     LLR +PA+RL     L HPF +R+
Sbjct: 234 ---FLSIEAKDLI---HQLLRRNPADRLSLSSVLDHPFMSRN 269

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score =  125 bits (315), Expect = 5e-33
 Identities = 65/348 (18%), Positives = 107/348 (30%), Gaps = 84/348 (24%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHD- 149
            +  +  +G G FG V E  +       AIK +R  +    RE  M E+  L +L  H  
Sbjct: 6   DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL-EHPG 64

Query: 150 -------IGGTRCVQIRNWFDYRNHICIVFEKL--GPSLYDFLRKNSYRSFP-IDLVREL 199
                         +       + ++ I  + L    +L D++            +   +
Sbjct: 65  IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQ-LCRKENLKDWMNGRCTIEERERSVCLHI 123

Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSS 258
             Q+ E+V F+H   L+H DLKP NI     + VKV D  F L  +       + +    
Sbjct: 124 FLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGD--FGLVTAMDQDEEEQTVLTPM 181

Query: 259 AIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF 318
                        +  H+  V T+ Y +PE I G  +++  D++S+G IL EL      F
Sbjct: 182 P-----------AYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYP---F 227

Query: 319 QTHENLEHLAM--MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK 376
            T                 PL                                       
Sbjct: 228 STQMERVRTLTDVRNLKFPPLFTQ-------------------------KYPC------- 255

Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                 ++                 +L   P ER +A   + +  F  
Sbjct: 256 ---EYVMVQD---------------MLSPSPMERPEAINIIENAVFED 285

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  123 bits (312), Expect = 9e-33
 Identities = 70/343 (20%), Positives = 129/343 (37%), Gaps = 92/343 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARH 148
            + I   +G+G FG V    + + K ++A+K++    + K      +  E+++   L RH
Sbjct: 10  DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL-RH 68

Query: 149 -DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
            +I     +++  +F     + ++ E     ++Y  L+K     F          +L  +
Sbjct: 69  PNI-----LRLYGYFHDATRVYLILEYAPLGTVYRELQKL--SKFDEQRTATYITELANA 121

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +++ H  R+IH D+KPEN+LL                    G           +K+ DFG
Sbjct: 122 LSYCHSKRVIHRDIKPENLLL-----------------GSAGE----------LKIADFG 154

Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
            S        + +  T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +    
Sbjct: 155 WSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN---T 211

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
           +    +R+          R +     +   GAR                           
Sbjct: 212 YQETYKRIS---------RVEFTFPDFVTEGAR--------------------------- 235

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                      DL+  LL+++P++R   RE L HP+ T +  +
Sbjct: 236 -----------DLISRLLKHNPSQRPMLREVLEHPWITANSSK 267

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score =  125 bits (315), Expect = 1e-32
 Identities = 89/406 (21%), Positives = 140/406 (34%), Gaps = 118/406 (29%)

Query: 29  PPPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDDKDGHYVFAIGE 88
           P P  P K              G+P  A       A P    P    D +          
Sbjct: 2   PAPADPGK-------------AGVPGVAAPGAPAAAPPAKEIPEVLVDPRSRR------- 41

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQR 144
               RY     +G+G F +  E  D + KE+ A KIV    + K  +   +  EI + + 
Sbjct: 42  ----RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRS 97

Query: 145 LARH-DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQ 202
           L  H  +     V    +F+  + + +V E     SL +  ++   ++      R   RQ
Sbjct: 98  L-AHQHV-----VGFHGFFEDNDFVFVVLELCRRRSLLELHKRR--KALTEPEARYYLRQ 149

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           ++    ++H  R+IH DLK  N+ L                 ++D            +K+
Sbjct: 150 IVLGCQYLHRNRVIHRDLKLGNLFL-----------------NEDLE----------VKI 182

Query: 263 IDFG-STTFEHQDHSYVVS--TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
            DFG +T  E+      V   T +Y APEV+   G ++  D+WS+GCI+  L  G+  F+
Sbjct: 183 GDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFE 242

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
           T   L+      R+                     +      P                 
Sbjct: 243 T-SCLK--ETYLRI---------------------KKNEYSIPK---------------- 262

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                  H++  A  LI   Q +L+ DP  R    E L   FFT  
Sbjct: 263 -------HINPVAASLI---QKMLQTDPTARPTINELLNDEFFTSG 298

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score =  121 bits (306), Expect = 2e-31
 Identities = 66/268 (24%), Positives = 98/268 (36%), Gaps = 56/268 (20%)

Query: 83  VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-YREAAMIEIDV 141
              +GE    R R+   + EG F  V E  D       A+K + S  +    A + E+  
Sbjct: 22  TVELGEL---RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCF 78

Query: 142 LQRLARHD----IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYR-SFPIDLV 196
           +++L+ H           +        +    ++ E     L +FL+K   R     D V
Sbjct: 79  MKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTV 138

Query: 197 RELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
            ++  Q   +V  MH  +  +IH DLK EN+LL                 S  G+     
Sbjct: 139 LKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLL-----------------SNQGTI---- 177

Query: 255 PKSSAIKLIDFGSTTFEHQDHSYVVS-----------TRH----YRAPEVI---LGLGWN 296
                 KL DFGS T       Y  S           TR+    YR PE+I         
Sbjct: 178 ------KLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIG 231

Query: 297 YPCDLWSVGCILVELCSGEALFQTHENL 324
              D+W++GCIL  LC  +  F+    L
Sbjct: 232 EKQDIWALGCILYLLCFRQHPFEDGAKL 259

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  120 bits (302), Expect = 3e-31
 Identities = 73/348 (20%), Positives = 126/348 (36%), Gaps = 92/348 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARH 148
            + I   +G+G FG V    + + K ++A+K++    + K      +  EI++   L RH
Sbjct: 15  DFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL-RH 73

Query: 149 -DIGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
            +I     +++ N+F  R  I ++ E      LY  L+K+    F          +L ++
Sbjct: 74  PNI-----LRMYNYFHDRKRIYLMLEFAPRGELYKELQKH--GRFDEQRSATFMEELADA 126

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + + HE ++IH D+KPEN+L+                                +K+ DFG
Sbjct: 127 LHYCHERKVIHRDIKPENLLMGYKGE---------------------------LKIADFG 159

Query: 267 -STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
            S          +  T  Y  PE+I G   +   DLW  G +  E   G   F +     
Sbjct: 160 WSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP---S 216

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
           H     R++           D +   +   G++                           
Sbjct: 217 HTETHRRIV---------NVDLKFPPFLSDGSK--------------------------- 240

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                      DL+  LLRY P +RL  +  + HP+   + RR   P+
Sbjct: 241 -----------DLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLPPV 277

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score =  119 bits (301), Expect = 4e-31
 Identities = 66/364 (18%), Positives = 136/364 (37%), Gaps = 93/364 (25%)

Query: 74  RPDDKDGHYVFAIGENLTPRY-RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--- 129
           + DD +     A+G +   R+ +   ++G G+F  V +  D E    VA   ++      
Sbjct: 7   QQDDIEELETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTK 66

Query: 130 KYREAAMIEIDVLQRLARHDIGGTRCVQ-IRNWFDY---RNHICIVFEKL-GPSLYDFLR 184
             R+    E ++L+ L +H       V+   +W      +  I +V E +   +L  +L+
Sbjct: 67  SERQRFKEEAEMLKGL-QHP----NIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK 121

Query: 185 KNSYRSFPIDLVRELGRQLLESVAFMHE--LRLIHTDLKPENILLVSAEYVKVPDYKFLS 242
           +  ++   I ++R   RQ+L+ + F+H     +IH DLK +NI +               
Sbjct: 122 R--FKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFI--------------- 164

Query: 243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDL 301
            +   GS          +K+ D G  T +    +  V+ T  + APE+     ++   D+
Sbjct: 165 -TGPTGS----------VKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDV 212

Query: 302 WSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDW 361
           ++ G  ++E+ + E  +   +N     +  RV   +                        
Sbjct: 213 YAFGMCMLEMATSEYPYSECQNAA--QIYRRVTSGVK----------------------- 247

Query: 362 PDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                              P    +       ++ ++++G +R +  ER   ++ L H F
Sbjct: 248 -------------------PASFDKVAIP---EVKEIIEGCIRQNKDERYSIKDLLNHAF 285

Query: 422 FTRD 425
           F  +
Sbjct: 286 FQEE 289

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score =  119 bits (301), Expect = 5e-31
 Identities = 67/337 (19%), Positives = 124/337 (36%), Gaps = 88/337 (26%)

Query: 101 GEGTFGQVVECFDNEKKELVAIKIVRSINK-YREAAMIEIDVLQRLARHDIGGTRCVQIR 159
           G+GT+G V    D   +  +AIK +   +  Y +    EI + + L +H       VQ  
Sbjct: 31  GKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHL-KHK----NIVQYL 85

Query: 160 NWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPID--LVRELGRQLLESVAFMHELRLI 216
             F     I I  E++ G SL   L ++ +     +   +    +Q+LE + ++H+ +++
Sbjct: 86  GSFSENGFIKIFMEQVPGGSLSALL-RSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIV 144

Query: 217 HTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS---TTFEHQ 273
           H D+K +N+L+                ++  G           +K+ DFG+       + 
Sbjct: 145 HRDIKGDNVLI----------------NTYSGV----------LKISDFGTSKRLAGINP 178

Query: 274 DHSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMME 331
                  T  Y APE+I     G+    D+WS+GC ++E+ +G+  F  +E  E  A M 
Sbjct: 179 CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPF--YELGEPQAAM- 235

Query: 332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS 391
                                F+ G     P+                +P       +  
Sbjct: 236 ---------------------FKVGMFKVHPE----------------IP-------ESM 251

Query: 392 AGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
           + +    +      DP +R  A + L   F     ++
Sbjct: 252 SAEAKAFILKCFEPDPDKRACANDLLVDEFLKVSSKK 288

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score =  117 bits (296), Expect = 4e-30
 Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 48/242 (19%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI-----EID 140
           E L  +Y++   +G G FG V           VAIK V    I+ + E         E+ 
Sbjct: 39  EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVV 98

Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS--LYDFLRKNSYRSFPIDLVRE 198
           +L+++      G   +++ +WF+  +   ++ E+  P   L+DF+ +    +   +L R 
Sbjct: 99  LLKKV-SSGFSG--VIRLLDWFERPDSFVLILERPEPVQDLFDFITER--GALQEELARS 153

Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
              Q+LE+V   H   ++H D+K ENIL+         D                     
Sbjct: 154 FFWQVLEAVRHCHNCGVLHRDIKDENILI---------DLNRGE---------------- 188

Query: 259 AIKLIDFGSTTFEHQDHSYVVS--TRHYRAPEVILGLGWNY---PCDLWSVGCILVELCS 313
            +KLIDFGS     +D  Y     TR Y  PE I      Y      +WS+G +L ++  
Sbjct: 189 -LKLIDFGSGAL-LKDTVYTDFDGTRVYSPPEWIRYHR--YHGRSAAVWSLGILLYDMVC 244

Query: 314 GE 315
           G+
Sbjct: 245 GD 246

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  115 bits (290), Expect = 4e-29
 Identities = 61/362 (16%), Positives = 122/362 (33%), Gaps = 93/362 (25%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI------------- 137
            YRI+  + +G F +++ C   +  +  A+K      + K R+                 
Sbjct: 32  DYRIIRTLNQGKFNKIILC--EKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDD 89

Query: 138 ---EIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSY----- 188
              E+ ++  + +++     C+         + + I++E +   S+  F           
Sbjct: 90  FKNELQIITDI-KNE----YCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNY 144

Query: 189 -RSFPIDLVRELGRQLLESVAFMHELRLI-HTDLKPENILLVSAEYVKVPDYKFLSRSSK 246
               PI +++ + + +L S +++H  + I H D+KP NIL+                  K
Sbjct: 145 TCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILM-----------------DK 187

Query: 247 DGSYFKNLPKSSAIKLIDFG-STTFEHQDHSYVVSTRHYRAPEVILGLGW--NYPCDLWS 303
           +G           +KL DFG S     +       T  +  PE             D+WS
Sbjct: 188 NGR----------VKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWS 237

Query: 304 VGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPD 363
           +G  L  +      F    +L  + +   +                         +++P 
Sbjct: 238 LGICLYVMFYNVVPFSLKISL--VELFNNIR---------------------TKNIEYPL 274

Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                       K            +  + + ID L+  LR +PAER+ + +AL+H +  
Sbjct: 275 DRNHFLYPLTNKKSTCSN-------NFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLA 327

Query: 424 RD 425
             
Sbjct: 328 DT 329

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score =  114 bits (287), Expect = 7e-29
 Identities = 58/260 (22%), Positives = 99/260 (38%), Gaps = 46/260 (17%)

Query: 70  SPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RS 127
            PP  P            E     YR+   +G+G FG V        +  VAIK++    
Sbjct: 9   GPPAPPGTPTPPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNR 68

Query: 128 INKYREAAMI-----EIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS--LY 180
           +  +   +       E+ +L ++     G    +++ +WF+ +    +V E+  P+  L+
Sbjct: 69  VLGWSPLSDSVTCPLEVALLWKV-GAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLF 127

Query: 181 DFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF 240
           D++ +           R    Q++ ++   H   ++H D+K ENIL+             
Sbjct: 128 DYITEKGP--LGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILI------------- 172

Query: 241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVS--TRHYRAPEVILGLGWNY- 297
                + G            KLIDFGS      D  Y     TR Y  PE I      Y 
Sbjct: 173 ---DLRRGC----------AKLIDFGSGAL-LHDEPYTDFDGTRVYSPPEWISRHQ--YH 216

Query: 298 --PCDLWSVGCILVELCSGE 315
             P  +WS+G +L ++  G+
Sbjct: 217 ALPATVWSLGILLYDMVCGD 236

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score =  115 bits (288), Expect = 1e-28
 Identities = 45/374 (12%), Positives = 98/374 (26%), Gaps = 124/374 (33%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY---------REAAMIEIDVLQ 143
                + +G+      +E  D E  E   + +     +           E   + +    
Sbjct: 74  TLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGI 133

Query: 144 RLARHDIGGTRCVQIRNWFDYRNH-----------------ICIVFEKLGPSLYDFL--- 183
           +  +      R +   +                           ++ ++  +L  F    
Sbjct: 134 KNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVL 193

Query: 184 --RKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL 241
               ++++S       +L  Q++  +A +H   L+HT L+P +I+L              
Sbjct: 194 LSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVL-------------- 239

Query: 242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGW------ 295
               + G           + L  F     +         +R +  PE+            
Sbjct: 240 ---DQRGG----------VFLTGFEHLVRDGARVV-SSVSRGFEPPELEARRATISYHRD 285

Query: 296 -----NYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAE 350
                 +  D W++G ++  +   +    T +                          +E
Sbjct: 286 RRTLMTFSFDAWALGLVIYWIWCADLPI-TKDAALGG---------------------SE 323

Query: 351 KYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER 410
             FR     + P                                   LL+G LRY   +R
Sbjct: 324 WIFRS--CKNIPQPV------------------------------RALLEGFLRYPKEDR 351

Query: 411 LKAREALRHPFFTR 424
           L   +A+  P + +
Sbjct: 352 LLPLQAMETPEYEQ 365

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score =  112 bits (282), Expect = 4e-28
 Identities = 55/300 (18%), Positives = 100/300 (33%), Gaps = 72/300 (24%)

Query: 127 SINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRK 185
           S     +A  ++I  +   +  +      V        + ++ I  +     +L D++ +
Sbjct: 100 SSPSPMDAPSVKIRRMDPFSTKNT-----VGQLQPSSPKVYLYIQMQLCRKENLKDWMNR 154

Query: 186 NSYRSFP-IDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSR 243
                     +   +  Q+ E+V F+H   L+H DLKP NI     + VKV D  F L  
Sbjct: 155 RCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGD--FGLVT 212

Query: 244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWS 303
           +       + +            +    +  H+  V T+ Y +PE I G  +++  D++S
Sbjct: 213 AMDQDEEEQTVL-----------TPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFS 261

Query: 304 VGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPD 363
           +G IL EL      F T         MERV                              
Sbjct: 262 LGLILFELLYS---FSTQ--------MERVR----------------------------- 281

Query: 364 GATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                     +   +R     +            ++Q +L   P ER +A + + +  F 
Sbjct: 282 ----------IITDVRNLKFPLLFTQKYP-QEHMMVQDMLSPSPTERPEATDIIENAIFE 330

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score =  109 bits (275), Expect = 5e-27
 Identities = 69/339 (20%), Positives = 119/339 (35%), Gaps = 51/339 (15%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--EIDVLQRLARHDIG 151
           +  +S++G G  G V +        ++A K++    K      I  E+ VL       I 
Sbjct: 35  FEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI- 93

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                     F     I I  E + G SL   L+K      P  ++ ++   +++ + ++
Sbjct: 94  -VGFYGA---FYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYL 147

Query: 211 H-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-ST 268
             + +++H D+KP NIL+                 +  G           IKL DFG S 
Sbjct: 148 REKHKIMHRDVKPSNILV-----------------NSRGE----------IKLCDFGVSG 180

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                  +  V TR Y +PE + G  ++   D+WS+G  LVE+  G       +  E   
Sbjct: 181 QLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELEL 240

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL-RLPNLIMQH 387
           M    +         R                            A+++LL  + N     
Sbjct: 241 MFGCQVEGDAAETPPRPRTPGRP---------LNKFGMDSRPPMAIFELLDYIVNEPPPK 291

Query: 388 VDHSA--GDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           +       +  D +   L  +PAER   ++ + H F  R
Sbjct: 292 LPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKR 330

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score =  109 bits (273), Expect = 7e-27
 Identities = 79/359 (22%), Positives = 127/359 (35%), Gaps = 114/359 (31%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR--EAAMI----------EID 140
           +Y  +S +G G FG V    D EK + V +K    I K +  E   I          EI 
Sbjct: 25  KYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKF---IKKEKVLEDCWIEDPKLGKVTLEIA 81

Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPS--LYDFLRKNSYRSFPIDLVRE 198
           +L R+  H       +++ + F+ +    +V EK G    L+ F+ ++        L   
Sbjct: 82  ILSRV-EHA----NIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHP--RLDEPLASY 134

Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
           + RQL+ +V ++    +IH D+K ENI++            F                  
Sbjct: 135 IFRQLVSAVGYLRLKDIIHRDIKDENIVI---------AEDF------------------ 167

Query: 259 AIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGE 315
            IKLIDFGS  +  +         T  Y APEV++G  +  P  ++WS+G  L  L   E
Sbjct: 168 TIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEE 227

Query: 316 ALFQTHENLEHLAMMERVLGPL--PHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
             F   E        E V   +  P+ +                         S++ M  
Sbjct: 228 NPFCELE--------ETVEAAIHPPYLV-------------------------SKELMS- 253

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
                                   L+ GLL+  P  R    + +  P+ T+ V    + 
Sbjct: 254 ------------------------LVSGLLQPVPERRTTLEKLVTDPWVTQPVNLADYT 288

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score =  109 bits (273), Expect = 2e-26
 Identities = 47/378 (12%), Positives = 98/378 (25%), Gaps = 124/378 (32%)

Query: 90  LTPRYRILSK---MGEGTFGQVVECFDNEKKELVAIKIVRSINK---------YREAAMI 137
           L  R R L +   +G+      +E  D E  E   + +     +           E   +
Sbjct: 73  LGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRL 132

Query: 138 EIDVLQRLARHDIGGTRCVQIRNWFDYRNH-----------------ICIVFEKLGPSLY 180
            +    +  +      R +   +                           ++ ++  +L 
Sbjct: 133 RLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQ 192

Query: 181 DFL-----RKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV 235
            F        ++++S       +L  Q++  +A +H   L+HT L+P +I+L        
Sbjct: 193 TFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVL-------- 244

Query: 236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVIL 291
                     + G           + L  F     +            +     A  ++ 
Sbjct: 245 ---------DQRGG----------VFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLP 285

Query: 292 GLG-----WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRAD 346
                     +  D W++G  +  +                         LP        
Sbjct: 286 FGQHHPTLMTFAFDTWTLGLAIYWI---------------------WCADLP-------- 316

Query: 347 RRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD 406
                     A                    L     I +   +    +  LL+G LRY 
Sbjct: 317 ------NTDDA-------------------ALGGSEWIFRSCKNIPQPVRALLEGFLRYP 351

Query: 407 PAERLKAREALRHPFFTR 424
             +RL   +A+  P + +
Sbjct: 352 KEDRLLPLQAMETPEYEQ 369

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score =  103 bits (258), Expect = 1e-24
 Identities = 74/348 (21%), Positives = 130/348 (37%), Gaps = 93/348 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARH 148
            Y I   +GEG+FG+V      + ++ VA+K +  + + K      +  EI  L +L RH
Sbjct: 10  PYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYL-KLLRH 68

Query: 149 -DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             I     +++ +       I +V E  G  L+D++ +   +    D  R   +Q++ ++
Sbjct: 69  PHI-----IKLYDVITTPTDIVMVIEYAGGELFDYIVEK--KRMTEDEGRRFFQQIICAI 121

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            + H  +++H DLKPEN+LL         D               N      +K+ DFG 
Sbjct: 122 EYCHRHKIVHRDLKPENLLL---------DDN------------LN------VKIADFGL 154

Query: 268 TTFEHQDHSYVVS--TRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHENL 324
           +      +    S  + +Y APEVI G  +  P  D+WS G +L  +  G   F   E +
Sbjct: 155 SNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFD-DEFI 213

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
            +L              V         +   GA+                          
Sbjct: 214 PNL-----------FKKVNSCVYVMPDFLSPGAQ-------------------------- 236

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
                        L++ ++  DP +R+  +E  R P+F  ++     P
Sbjct: 237 ------------SLIRRMIVADPMQRITIQEIRRDPWFNVNLPDYLRP 272

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score =  103 bits (258), Expect = 1e-24
 Identities = 79/340 (23%), Positives = 119/340 (35%), Gaps = 86/340 (25%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH-DIG 151
           RY  +  +G G FG      D   KELVA+K +       E    EI    R  RH +I 
Sbjct: 21  RYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINH-RSLRHPNI- 78

Query: 152 GTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               V+ +       H+ I+ E   G  LY+ +       F  D  R   +QLL  V++ 
Sbjct: 79  ----VRFKEVILTPTHLAIIMEYASGGELYERICNA--GRFSEDEARFFFQQLLSGVSYC 132

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H +++ H DLK EN LL                   DGS          +K+ DFG +  
Sbjct: 133 HSMQICHRDLKLENTLL-------------------DGSPAPR------LKICDFGYSKS 167

Query: 271 EHQDH--SYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHENLEHL 327
                     V T  Y APEV+L   ++    D+WS G  L  +  G   F+        
Sbjct: 168 SVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFE-DPEEPRD 226

Query: 328 --AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
               ++R+L              + KY                           +P+ I 
Sbjct: 227 YRKTIQRIL--------------SVKY--------------------------SIPDDI- 245

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                 + +   L+  +   DPA R+   E   H +F ++
Sbjct: 246 ----RISPECCHLISRIFVADPATRISIPEIKTHSWFLKN 281

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score =  101 bits (253), Expect = 1e-24
 Identities = 62/349 (17%), Positives = 126/349 (36%), Gaps = 98/349 (28%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-----EIDVLQRLAR 147
            + ++  +GEG +G+V    +   +E VA+KI   ++  R          EI + + L  
Sbjct: 8   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKI---VDMKRAVDCPENIKKEICINKML-N 63

Query: 148 H-DIGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           H ++     V+        N   +  E   G  L+D +  +     P    +    QL+ 
Sbjct: 64  HENV-----VKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG--MPEPDAQRFFHQLMA 116

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            V ++H + + H D+KPEN+LL                   D     N      +K+ DF
Sbjct: 117 GVVYLHGIGITHRDIKPENLLL-------------------DER--DN------LKISDF 149

Query: 266 G-STTFEHQDHSYVVSTR----HYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALFQ 319
           G +T F + +   +++       Y APE++    ++  P D+WS G +L  + +GE  + 
Sbjct: 150 GLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
              +                       +  + Y        W                  
Sbjct: 210 QPSDSCQE---------------YSDWKEKKTYL-----NPW------------------ 231

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                 + +D +    + LL  +L  +P+ R+   +  +  ++ + +++
Sbjct: 232 ------KKIDSAP---LALLHKILVENPSARITIPDIKKDRWYNKPLKK 271

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score =   99 bits (250), Expect = 4e-24
 Identities = 80/351 (22%), Positives = 121/351 (34%), Gaps = 98/351 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARH 148
            Y +   +G GTFG+V           VA+KI+  + I        I  EI  L +L RH
Sbjct: 12  HYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNL-KLFRH 70

Query: 149 -DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             I     +++           +V E + G  L+D++ K+          R L +Q+L +
Sbjct: 71  PHI-----IKLYQVISTPTDFFMVMEYVSGGELFDYICKH--GRVEEMEARRLFQQILSA 123

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V + H   ++H DLKPEN+LL         D               N       K+ DFG
Sbjct: 124 VDYCHRHMVVHRDLKPENVLL---------DAH------------MN------AKIADFG 156

Query: 267 STTFEHQDHSYVVSTR----HYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTH 321
            +          + T     +Y APEVI G  +  P  D+WS G IL  L  G   F   
Sbjct: 157 LSNMMSDGE--FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFD-D 213

Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           E++  L              +        +Y  R                          
Sbjct: 214 EHVPTL-----------FKKIRGGVFYIPEYLNRSVA----------------------- 239

Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
                           LL  +L+ DP +R   ++   H +F +D+    FP
Sbjct: 240 ---------------TLLMHMLQVDPLKRATIKDIREHEWFKQDLPSYLFP 275

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score =  100 bits (251), Expect = 4e-24
 Identities = 76/342 (22%), Positives = 131/342 (38%), Gaps = 87/342 (25%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLA 146
            +   +Y    K+G+G  G V    D    + VAI+ +    + ++  +I EI V++   
Sbjct: 16  GDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENK 75

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
             +I     V   + +   + + +V E L G SL D + +       I  V    R+ L+
Sbjct: 76  NPNI-----VNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAV---CRECLQ 127

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++ F+H  ++IH D+K +NILL                   DGS          +KL DF
Sbjct: 128 ALEFLHSNQVIHRDIKSDNILL-----------------GMDGS----------VKLTDF 160

Query: 266 GST---TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           G     T E    S +V T ++ APEV+    +    D+WS+G + +E+  GE       
Sbjct: 161 GFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE------- 213

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
                        P P+                           + + +RA++ +     
Sbjct: 214 -------------P-PYL--------------------------NENPLRALYLIATNGT 233

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             +Q+ +  +    D L   L  D  +R  A+E L+H F   
Sbjct: 234 PELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKI 275

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score =  100 bits (252), Expect = 4e-24
 Identities = 70/342 (20%), Positives = 131/342 (38%), Gaps = 87/342 (25%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLA 146
            +         K+GEG+ G V    +      VA+K++    + R   +  E+ +++   
Sbjct: 41  GDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQ 100

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
             ++     V++   +     + ++ E L G +L D + +       I  V      +L+
Sbjct: 101 HFNV-----VEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATV---CEAVLQ 152

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++A++H   +IH D+K ++ILL                 + DG           +KL DF
Sbjct: 153 ALAYLHAQGVIHRDIKSDSILL-----------------TLDGR----------VKLSDF 185

Query: 266 G---STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
           G     + +      +V T ++ APEVI    +    D+WS+G +++E+  GE       
Sbjct: 186 GFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGE------- 238

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
                        P P+                           S   ++A+ +L   P 
Sbjct: 239 -------------P-PYF--------------------------SDSPVQAMKRLRDSPP 258

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             +++    +  L D L+ +L  DP ER  A+E L HPF  +
Sbjct: 259 PKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQ 300

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score =  100 bits (250), Expect = 1e-23
 Identities = 61/346 (17%), Positives = 127/346 (36%), Gaps = 92/346 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD--- 149
            + ++  +G GT+GQV +    +  +L AIK++       E    EI++L++ + H    
Sbjct: 25  IFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIA 84

Query: 150 --IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
              G       +N     + + +V E     S+ D ++     +   + +  + R++L  
Sbjct: 85  TYYG---AFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRG 141

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           ++ +H+ ++IH D+K +N+LL                 +++            +KL+DFG
Sbjct: 142 LSHLHQHKVIHRDIKGQNVLL-----------------TENAE----------VKLVDFG 174

Query: 267 ---STTFEHQDHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGEALF 318
                       +  + T ++ APEVI         +++  DLWS+G   +E+  G    
Sbjct: 175 VSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAP-- 232

Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL 378
                              P   +                            MRA++ + 
Sbjct: 233 -------------------PLCDM--------------------------HPMRALFLIP 247

Query: 379 RLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           R P   ++    S       ++  L  + ++R    + ++HPF   
Sbjct: 248 RNPAPRLKSKKWSK-KFQSFIESCLVKNHSQRPATEQLMKHPFIRD 292

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 99.3 bits (248), Expect = 1e-23
 Identities = 62/349 (17%), Positives = 126/349 (36%), Gaps = 98/349 (28%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-----EIDVLQRLAR 147
            + ++  +GEG +G+V    +   +E VA+KI   ++  R          EI + + L  
Sbjct: 8   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKI---VDMKRAVDCPENIKKEICINKML-N 63

Query: 148 H-DIGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           H ++     V+        N   +  E   G  L+D +  +     P    +    QL+ 
Sbjct: 64  HENV-----VKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIG--MPEPDAQRFFHQLMA 116

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            V ++H + + H D+KPEN+LL                   D     N      +K+ DF
Sbjct: 117 GVVYLHGIGITHRDIKPENLLL-------------------DER--DN------LKISDF 149

Query: 266 G-STTFEHQDHSYVVSTR----HYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALFQ 319
           G +T F + +   +++       Y APE++    ++  P D+WS G +L  + +GE  + 
Sbjct: 150 GLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWD 209

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
              +                       +  + Y        W                  
Sbjct: 210 QPSDSCQE---------------YSDWKEKKTY-----LNPW------------------ 231

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
                 + +D +    + LL  +L  +P+ R+   +  +  ++ + +++
Sbjct: 232 ------KKIDSAP---LALLHKILVENPSARITIPDIKKDRWYNKPLKK 271

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 98.9 bits (247), Expect = 2e-23
 Identities = 67/366 (18%), Positives = 120/366 (32%), Gaps = 115/366 (31%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           +Y +  ++G+G++G V   ++       A+K+   ++K +                    
Sbjct: 14  QYTLKDEIGKGSYGVVKLAYNENDNTYYAMKV---LSKKKLIRQAGFPRRPPPRGTRPAP 70

Query: 153 TRCVQIRNWFD--YR-------------------------NHICIVFEKL-GPSLYDFLR 184
             C+Q R   +  Y+                         +H+ +VFE +    + +   
Sbjct: 71  GGCIQPRGPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT 130

Query: 185 KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS 244
                    D  R   + L++ + ++H  ++IH D+KP N+L+                 
Sbjct: 131 LKP---LSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLV----------------- 170

Query: 245 SKDGSYFKNLPKSSAIKLIDFG-STTFEHQDH--SYVVSTRHYRAPEVILGLGWNY---P 298
            +DG           IK+ DFG S  F+  D   S  V T  + APE +      +    
Sbjct: 171 GEDGH----------IKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKA 220

Query: 299 CDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGAR 358
            D+W++G  L     G+  F   E +  L           H  +                
Sbjct: 221 LDVWAMGVTLYCFVFGQCPFM-DERIMCL-----------HSKIKSQA------------ 256

Query: 359 LDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
                              L  P+      D +  DL DL+  +L  +P  R+   E   
Sbjct: 257 -------------------LEFPD----QPDIAE-DLKDLITRMLDKNPESRIVVPEIKL 292

Query: 419 HPFFTR 424
           HP+ TR
Sbjct: 293 HPWVTR 298

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score =   99 bits (249), Expect = 2e-23
 Identities = 60/349 (17%), Positives = 115/349 (32%), Gaps = 54/349 (15%)

Query: 94  YRILSKMGEG--TFGQVVECFDNEKKELVAIKIV---RSINKYREAAMIEIDVLQRLARH 148
           Y +L+ +G+G      V         E V ++ +      N+       E+ V +     
Sbjct: 27  YELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHP 86

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           +I     V  R  F   N + +V   +   S  D +  +         +  + + +L+++
Sbjct: 87  NI-----VPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKAL 141

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++H +  +H  +K  +IL+                 S DG           + L    S
Sbjct: 142 DYIHHMGYVHRSVKASHILI-----------------SVDGK----------VYLSGLRS 174

Query: 268 ----------TTFEHQDHSYVVSTRHYRAPEVI--LGLGWNYPCDLWSVGCILVELCSGE 315
                         H    Y V    + +PEV+     G++   D++SVG    EL +G 
Sbjct: 175 NLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGH 234

Query: 316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
             F+   ++    M+   L      ++  +   AE+     +R     G +   +     
Sbjct: 235 VPFK---DMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPR 291

Query: 376 KLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                      H   S       ++  L+ +P  R  A   L H FF +
Sbjct: 292 PSNGDSPSHPYHRTFSP-HFHHFVEQCLQRNPDARPSASTLLNHSFFKQ 339

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 72/338 (21%), Positives = 130/338 (38%), Gaps = 85/338 (25%)

Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI 150
              + +L K+GEG++G V +    E  ++VAIK V  +    +  + EI ++Q+     +
Sbjct: 28  EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQV-PVESDLQEIIKEISIMQQCDSPHV 86

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
                V+    +     + IV E     S+ D +R  + ++   D +  + +  L+ + +
Sbjct: 87  -----VKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEY 140

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST- 268
           +H +R IH D+K  NILL                 + +G            KL DFG   
Sbjct: 141 LHFMRKIHRDIKAGNILL-----------------NTEGH----------AKLADFGVAG 173

Query: 269 --TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
             T      + V+ T  + APEVI  +G+N   D+WS+G   +E+  G+           
Sbjct: 174 QLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGK----------- 222

Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
                    P P+  +                            MRA++ +   P    +
Sbjct: 223 ---------P-PYADI--------------------------HPMRAIFMIPTNPPPTFR 246

Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             +  + +  D ++  L   P +R  A + L+HPF   
Sbjct: 247 KPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVRS 284

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 96.6 bits (241), Expect = 1e-22
 Identities = 66/360 (18%), Positives = 130/360 (36%), Gaps = 106/360 (29%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAM---IEIDVLQRLAR 147
           +Y +   +GEG++G+V E  D+E     A+KI+  + + +          EI +L+RL R
Sbjct: 6   KYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRL-R 64

Query: 148 H-DIGGTRCVQIRN--WFDYRNHICIVFE--KLGPS-LYDFLRKNSYRSFPIDLVRELGR 201
           H ++     +Q+ +  + + +  + +V E    G   + D + +   + FP+        
Sbjct: 65  HKNV-----IQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPE---KRFPVCQAHGYFC 116

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           QL++ + ++H   ++H D+KP N+LL                 +  G+          +K
Sbjct: 117 QLIDGLEYLHSQGIVHKDIKPGNLLL-----------------TTGGT----------LK 149

Query: 262 LIDFG-STTFEHQDHSYVVSTR----HYRAPEVILGLGWNY---PCDLWSVGCILVELCS 313
           +   G +             T      ++ PE+  GL   +     D+WS G  L  + +
Sbjct: 150 ISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLD-TFSGFKVDIWSAGVTLYNITT 208

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G   F+  +N+  L              + +                             
Sbjct: 209 GLYPFE-GDNIYKL-----------FENIGKGSYAIPGDCGPPLS--------------- 241

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
                                  DLL+G+L Y+PA+R   R+  +H +F +       P+
Sbjct: 242 -----------------------DLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPPAEAPV 278

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 96.2 bits (240), Expect = 2e-22
 Identities = 73/350 (20%), Positives = 122/350 (34%), Gaps = 99/350 (28%)

Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYR------EAAMIEID 140
            +     YR+L  +G+G F +V           VAIKI   I+K +      +    E+ 
Sbjct: 10  EQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKI---IDKTQLNPTSLQKLFREVR 66

Query: 141 VLQRLARH-DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRE 198
           +++ L  H +I     V++    +    + ++ E   G  ++D+L  +          R 
Sbjct: 67  IMKIL-NHPNI-----VKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGR--MKEKEARS 118

Query: 199 LGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSS 258
             RQ++ +V + H+ R++H DLK EN+LL                   D +         
Sbjct: 119 KFRQIVSAVQYCHQKRIVHRDLKAENLLL-----------------DADMN--------- 152

Query: 259 AIKLIDFG-STTFEHQDH-SYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGE 315
            IK+ DFG S  F              Y APE+  G  ++ P  D+WS+G IL  L SG 
Sbjct: 153 -IKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGS 211

Query: 316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW 375
             F   +NL+ L              V+R   R   Y                       
Sbjct: 212 LPFD-GQNLKEL-----------RERVLRGKYRIPFYMSTDCE----------------- 242

Query: 376 KLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                                +LL+  L  +P +R    + ++  +    
Sbjct: 243 ---------------------NLLKRFLVLNPIKRGTLEQIMKDRWINAG 271

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 69/333 (20%), Positives = 114/333 (34%), Gaps = 90/333 (27%)

Query: 101 GEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHDIGGTRCV 156
           GEG+F  VV   +       AIKI+    I K  +      E DV+ RL  H       V
Sbjct: 39  GEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-DHPF----FV 93

Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
           ++   F     +           L  ++RK    SF     R    +++ ++ ++H   +
Sbjct: 94  KLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSALEYLHGKGI 151

Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           IH DLKPENILL    ++++ D+      S +    +              + +F     
Sbjct: 152 IHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR--------------ANSF----- 192

Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLG 335
              V T  Y +PE++         DLW++GCI+ +L +G   F    N     + ++++ 
Sbjct: 193 ---VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPF-RAGN--EYLIFQKII- 245

Query: 336 PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL 395
                                   D+P+                                
Sbjct: 246 --------------------KLEYDFPEKFFP--------------------------KA 259

Query: 396 IDLLQGLLRYDPAERL------KAREALRHPFF 422
            DL++ LL  D  +RL             HPFF
Sbjct: 260 RDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 292

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 95.5 bits (238), Expect = 3e-22
 Identities = 67/351 (19%), Positives = 115/351 (32%), Gaps = 108/351 (30%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHD-I 150
              L +MG GT GQV +    +   ++A+K +R     +  +  ++++DV+ +      I
Sbjct: 27  LENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYI 86

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                VQ    F     + I  E +G       ++      P  ++ ++   +++++ ++
Sbjct: 87  -----VQCFGTFITNTDVFIAMELMGTCAEKLKKRMQ-GPIPERILGKMTVAIVKALYYL 140

Query: 211 H-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG--- 266
             +  +IH D+KP NILL                  + G           IKL DFG   
Sbjct: 141 KEKHGVIHRDVKPSNILL-----------------DERGQ----------IKLCDFGISG 173

Query: 267 -------STTFEHQDHSYVVSTRHYRAPEVI-----LGLGWNYPCDLWSVGCILVELCSG 314
                                   Y APE I         ++   D+WS+G  LVEL +G
Sbjct: 174 RLVDDKAKDRS--------AGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATG 225

Query: 315 EA-LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           +        + E L  +  +    P                                   
Sbjct: 226 QFPYKNCKTDFEVLTKV--LQEEPP----------------------------------- 248

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                 LP     H+  S  D    ++  L  D  +R K  + L H F  R
Sbjct: 249 -----LLPG----HMGFSG-DFQSFVKDCLTKDHRKRPKYNKLLEHSFIKR 289

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 94.2 bits (235), Expect = 5e-22
 Identities = 61/352 (17%), Positives = 118/352 (33%), Gaps = 109/352 (30%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--EIDVLQRLARHD-I 150
              + ++G G +G V +       +++A+K +R+    +E   +  ++D+  R       
Sbjct: 9   LEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFT 68

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPI--DLVRELGRQLLESVA 208
                V           + I  E +  SL  F ++   +   I  D++ ++   +++++ 
Sbjct: 69  -----VTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALE 123

Query: 209 FMH-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
            +H +L +IH D+KP N+L+                 +  G           +K+ DFG 
Sbjct: 124 HLHSKLSVIHRDVKPSNVLI-----------------NALGQ----------VKMCDFGI 156

Query: 267 ---------STTFEHQDHSYVVSTRHYRAPEVILG----LGWNYPCDLWSVGCILVELCS 313
                                   + Y APE I       G++   D+WS+G  ++EL  
Sbjct: 157 SGYLVDDVAKDID--------AGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAI 208

Query: 314 GEALFQTHEN-LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
               + +     + L  +  V  P P                   +L  P    S     
Sbjct: 209 LRFPYDSWGTPFQQLKQV--VEEPSP-------------------QL--PADKFSA---- 241

Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                                + +D     L+ +  ER    E ++HPFFT 
Sbjct: 242 ---------------------EFVDFTSQCLKKNSKERPTYPELMQHPFFTL 272

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 94.7 bits (236), Expect = 6e-22
 Identities = 71/342 (20%), Positives = 133/342 (38%), Gaps = 90/342 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLARHDIG 151
            + I+ ++G+G FG+V +  + E   L A K++ + ++      I EI++L       I 
Sbjct: 20  VWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYI- 78

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               V++   + +   + I+ E   G ++   + +   R      ++ + RQ+LE++ F+
Sbjct: 79  ----VKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFL 133

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST-- 268
           H  R+IH DLK  N+L+                 + +G           I+L DFG +  
Sbjct: 134 HSKRIIHRDLKAGNVLM-----------------TLEGD----------IRLADFGVSAK 166

Query: 269 -TFEHQDHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
                Q     + T ++ APEV++        ++Y  D+WS+G  L+E+   E       
Sbjct: 167 NLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIE------- 219

Query: 323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN 382
                        P PHH +                          + MR + K+ +   
Sbjct: 220 -------------P-PHHEL--------------------------NPMRVLLKIAKSDP 239

Query: 383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
             +      + +  D L+  L  +P  R  A + L HPF + 
Sbjct: 240 PTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSS 281

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 96.0 bits (239), Expect = 1e-21
 Identities = 80/349 (22%), Positives = 123/349 (35%), Gaps = 94/349 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMI--EIDVLQRLARH 148
            Y +   +G GTFG+V           VA+KI+  + I        I  EI  L +L RH
Sbjct: 17  HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNL-KLFRH 75

Query: 149 -DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             I     +++       + I +V E + G  L+D++ KN          R L +Q+L  
Sbjct: 76  PHI-----IKLYQVISTPSDIFMVMEYVSGGELFDYICKN--GRLDEKESRRLFQQILSG 128

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V + H   ++H DLKPEN+LL         D               N       K+ DFG
Sbjct: 129 VDYCHRHMVVHRDLKPENVLL---------DAH------------MN------AKIADFG 161

Query: 267 STTFEHQDHSYVVS--TRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHEN 323
            +           S  + +Y APEVI G  +  P  D+WS G IL  L  G   F   ++
Sbjct: 162 LSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFD-DDH 220

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           +  L              +        +Y                               
Sbjct: 221 VPTL-----------FKKICDGIFYTPQYLNPSVI------------------------- 244

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP 432
                         LL+ +L+ DP +R   ++   H +F +D+ +  FP
Sbjct: 245 -------------SLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLFP 280

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 61/245 (24%), Positives = 94/245 (38%), Gaps = 51/245 (20%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD-----I 150
           +   +G G FG V  C    + + VAIK + S    R+A ++E+  L R+  H       
Sbjct: 12  VEEVVGRGAFGVV--CKAKWRAKDVAIKQIES-ESERKAFIVELRQLSRV-NHPNIVKLY 67

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRK-NSYRSFPIDLVRELGRQLLESVA 208
           G              N +C+V E   G SLY+ L        +          Q  + VA
Sbjct: 68  GACL-----------NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVA 116

Query: 209 FMHELR---LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++H ++   LIH DLKP N+LLV+   V                          +K+ DF
Sbjct: 117 YLHSMQPKALIHRDLKPPNLLLVAGGTV--------------------------LKICDF 150

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
           G+        +    +  + APEV  G  ++  CD++S G IL E+ +    F       
Sbjct: 151 GTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPA 210

Query: 326 HLAMM 330
              M 
Sbjct: 211 FRIMW 215

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 61/236 (25%), Positives = 97/236 (41%), Gaps = 42/236 (17%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDI 150
            +  L K+G+G+FG+V +  DN  +++VAIKI+         E    EI VL +     +
Sbjct: 23  LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV 82

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
                 +    +     + I+ E L G S  D L         I  +    R++L+ + +
Sbjct: 83  -----TKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATIL---REILKGLDY 134

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG--- 266
           +H  + IH D+K  N+LL                 S+ G           +KL DFG   
Sbjct: 135 LHSEKKIHRDIKAANVLL-----------------SEHGE----------VKLADFGVAG 167

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA-LFQTH 321
             T      +  V T  + APEVI    ++   D+WS+G   +EL  GE    + H
Sbjct: 168 QLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELH 223

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 94.0 bits (234), Expect = 2e-21
 Identities = 71/351 (20%), Positives = 123/351 (35%), Gaps = 103/351 (29%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI----EIDVLQ 143
           ++    +  L ++G G+FG V    D    E+VAIK +    K           E+  LQ
Sbjct: 50  DDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQ 109

Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
           +L   +      +Q R  +   +   +V E    S  D L  +  +      +  +    
Sbjct: 110 KLRHPNT-----IQYRGCYLREHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGA 163

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L+ +A++H   +IH D+K  NILL                 S+ G           +KL 
Sbjct: 164 LQGLAYLHSHNMIHRDVKAGNILL-----------------SEPGL----------VKLG 196

Query: 264 DFGS-------TTFEHQDHSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCS 313
           DFGS        +F        V T ++ APEVIL +    ++   D+WS+G   +EL  
Sbjct: 197 DFGSASIMAPANSF--------VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAE 248

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
            +                    P P   +                          ++M A
Sbjct: 249 RK--------------------P-PLFNM--------------------------NAMSA 261

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
           ++ + +  +  +Q    S     + +   L+  P +R  +   L+H F  R
Sbjct: 262 LYHIAQNESPALQSGHWSE-YFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR 311

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 70/345 (20%), Positives = 121/345 (35%), Gaps = 91/345 (26%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--EIDVLQRLARHD-I 150
            + L ++G G +G V +       +++A+K +RS    +E   +  ++DV+ R +    I
Sbjct: 24  LKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYI 83

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRK---NSYRSFPIDLVRELGRQLLESV 207
                VQ            I  E +  S   F +          P +++ ++    ++++
Sbjct: 84  -----VQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKAL 138

Query: 208 AFMH-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
             +   L++IH D+KP NILL                  + G+          IKL DFG
Sbjct: 139 NHLKENLKIIHRDIKPSNILL-----------------DRSGN----------IKLCDFG 171

Query: 267 -STTFEH-QDHSYVVSTRHYRAPEVI----LGLGWNYPCDLWSVGCILVELCSGEA-LFQ 319
            S         +     R Y APE I       G++   D+WS+G  L EL +G     +
Sbjct: 172 ISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPK 231

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
            +   + L  +  V G  P                   +L   +      S         
Sbjct: 232 WNSVFDQLTQV--VKGDPP-------------------QL--SNSEEREFSP-------- 260

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                           I+ +   L  D ++R K +E L+HPF   
Sbjct: 261 --------------SFINFVNLCLTKDESKRPKYKELLKHPFILM 291

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 92.4 bits (230), Expect = 5e-21
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 40/234 (17%)

Query: 92  PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG 151
           P +R+  K+G G FG++    +    E VAIK+    ++      +E    ++L      
Sbjct: 9   PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAP-QLHLEYRFYKQL----GS 63

Query: 152 GTRCVQIRNWF-DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           G    Q+  +F     +  +V E LGPSL D L     R+F +  V  +  QL+  + ++
Sbjct: 64  GDGIPQVY-YFGPCGKYNAMVLELLGPSLED-LFDLCDRTFSLKTVLMIAIQLISRMEYV 121

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG---- 266
           H   LI+ D+KPEN L+                    G           I +IDF     
Sbjct: 122 HSKNLIYRDVKPENFLI--------------------GR--PGNKTQQVIHIIDFALAKE 159

Query: 267 ---STTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                T +H   ++H  +  T  Y +    LG   +   DL ++G + +    G
Sbjct: 160 YIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRG 213

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 94.2 bits (234), Expect = 8e-21
 Identities = 67/342 (19%), Positives = 119/342 (34%), Gaps = 94/342 (27%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SI--NKYREAAMIEIDVLQRLARHDI 150
            +   +G G FG+V  C   +  ++ A+K +    I   +    A+ E  +L       +
Sbjct: 192 SVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL-----V 246

Query: 151 GGTRC---VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
               C   V +   F   + +  + + + G  L+  L ++    F    +R    +++  
Sbjct: 247 STGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILG 304

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           +  MH   +++ DLKP NILL    +V++ D                     A       
Sbjct: 305 LEHMHNRFVVYRDLKPANILLDEHGHVRISDLGL------------------ACDFSKKK 346

Query: 267 STTFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                       V T  Y APEV+  G+ ++   D +S+GC+L +L  G + F+ H+  +
Sbjct: 347 PHAS--------VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD 398

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
              +    L                        ++ PD  +                   
Sbjct: 399 KHEIDRMTL---------------------TMAVELPDSFSP------------------ 419

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                   +L  LL+GLL+ D   RL      A+E    PFF
Sbjct: 420 --------ELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFF 453

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 90.5 bits (225), Expect = 1e-20
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 8/137 (5%)

Query: 92  PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG 151
            RYR+  K+G G+FG +    D    E VAIK+     K+ +  + E  + + +     G
Sbjct: 9   NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHI-ESKIYKMMQ----G 63

Query: 152 GTRCVQIRNWF-DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           G     IR W     ++  +V E LGPSL D L     R F +  V  L  Q++  + ++
Sbjct: 64  GVGIPTIR-WCGAEGDYNVMVMELLGPSLED-LFNFCSRKFSLKTVLLLADQMISRIEYI 121

Query: 211 HELRLIHTDLKPENILL 227
           H    IH D+KP+N L+
Sbjct: 122 HSKNFIHRDVKPDNFLM 138

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 90.0 bits (224), Expect = 1e-20
 Identities = 57/255 (22%), Positives = 94/255 (36%), Gaps = 52/255 (20%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-----EIDVLQRLARHD 149
            +   +G G FG+V   F    +  VA+K  R       +  I     E  +   L +H 
Sbjct: 10  TLEEIIGIGGFGKVYRAFWIGDE--VAVKAARHDPDEDISQTIENVRQEAKLFAML-KHP 66

Query: 150 -----IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQL 203
                 G   C++         ++C+V E   G  L   L     +  P D++     Q+
Sbjct: 67  NIIALRGV--CLK-------EPNLCLVMEFARGGPLNRVLSG---KRIPPDILVNWAVQI 114

Query: 204 LESVAFMHE---LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
              + ++H+   + +IH DLK  NIL+                             +  +
Sbjct: 115 ARGMNYLHDEAIVPIIHRDLKSSNILI-------------------LQKVENGDLSNKIL 155

Query: 261 KLIDFGSTTFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
           K+ DFG     H+           + APEVI    ++   D+WS G +L EL +GE  F 
Sbjct: 156 KITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPF- 214

Query: 320 THENLEHLAMMERVL 334
               ++ LA+   V 
Sbjct: 215 --RGIDGLAVAYGVA 227

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 92.9 bits (231), Expect = 2e-20
 Identities = 73/339 (21%), Positives = 121/339 (35%), Gaps = 89/339 (26%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARHD 149
           YR+L   G+G FG+V  C      ++ A K +        K    A+ E  +L+++    
Sbjct: 189 YRVL---GKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF 245

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           +     V +   ++ ++ +C+V   + G  L   +       FP         ++   + 
Sbjct: 246 V-----VSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLE 300

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +H  R+++ DLKPENILL    ++++ D   L+    +G                    
Sbjct: 301 DLHRERIVYRDLKPENILLDDHGHIRISDLG-LAVHVPEGQ----------------TIK 343

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                     V T  Y APEV+    + +  D W++GC+L E+ +G++ FQ  +      
Sbjct: 344 GR--------VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKRE 395

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            +ER        +V        + F   AR                              
Sbjct: 396 EVER--------LVKEVPEEYSERFSPQAR------------------------------ 417

Query: 389 DHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                    L   LL  DPAERL      ARE   HP F
Sbjct: 418 --------SLCSQLLCKDPAERLGCRGGSAREVKEHPLF 448

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 40/234 (17%)

Query: 92  PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG 151
             Y++  ++GEG+FG + E  +    + VAIK     +   +    E    + L     G
Sbjct: 10  VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRD-EYRTYKLL----AG 64

Query: 152 GTRCVQIRNWF-DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
            T    +  +F     H  +V + LGPSL D L     R F +  V    +Q+L  V  +
Sbjct: 65  CTGIPNVY-YFGQEGLHNVLVIDLLGPSLED-LLDLCGRKFSVKTVAMAAKQMLARVQSI 122

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG---- 266
           HE  L++ D+KP+N L+                         N   ++ I ++DFG    
Sbjct: 123 HEKSLVYRDIKPDNFLI----------------------GRPNSKNANMIYVVDFGMVKF 160

Query: 267 ---STTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG 314
                T +H   ++   +  T  Y +    LG   +   DL ++G + +    G
Sbjct: 161 YRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRG 214

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 88.5 bits (220), Expect = 6e-20
 Identities = 49/252 (19%), Positives = 83/252 (32%), Gaps = 56/252 (22%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI--------EIDVLQRLAR 147
              ++G+G FG V +    + K +VAIK +   +   E  MI        E+ ++  L  
Sbjct: 23  YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL-N 81

Query: 148 HD-----IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGR 201
           H       G              N   +V E +    LY  L   +       +   L  
Sbjct: 82  HPNIVKLYGLMH-----------NPPRMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLML 129

Query: 202 QLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +   + +M      ++H DL+  NI L S                       +      
Sbjct: 130 DIALGIEYMQNQNPPIVHRDLRSPNIFLQS----------------------LDENAPVC 167

Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNY--PCDLWSVGCILVELCSGEAL 317
            K+ DFG +       S ++    + APE I     +Y    D +S   IL  + +GE  
Sbjct: 168 AKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGP 227

Query: 318 FQTHENLEHLAM 329
           F   +   +  +
Sbjct: 228 F---DEYSYGKI 236

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 68/339 (20%), Positives = 127/339 (37%), Gaps = 94/339 (27%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHD 149
           +  +  +G G+FG+V+     E     A+KI+    + K ++    + E  +LQ +    
Sbjct: 43  FDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV-NFP 101

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 V++   F   +++ +V E   G  ++  LR+     F     R    Q++ +  
Sbjct: 102 F----LVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFE 155

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H L LI+ DLKPEN+L+    Y++V D+ F                    K +   + 
Sbjct: 156 YLHSLDLIYRDLKPENLLIDQQGYIQVTDFGF-------------------AKRVKGRTW 196

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
           T           T    APE+IL  G+N   D W++G ++ E+ +G   F   +    + 
Sbjct: 197 TL--------CGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPF-FADQ--PIQ 245

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
           + E+++                       ++ +P   +S                     
Sbjct: 246 IYEKIV---------------------SGKVRFPSHFSS--------------------- 263

Query: 389 DHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                DL DLL+ LL+ D  +R         +   H +F
Sbjct: 264 -----DLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWF 297

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 90.5 bits (224), Expect = 8e-20
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 8/137 (5%)

Query: 92  PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG 151
            ++R+  K+G G+FG++    + +  E VAIK+     K+ +    E  + + L     G
Sbjct: 7   NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLY-ESKIYRILQ----G 61

Query: 152 GTRCVQIRNWF-DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
           GT    +R WF    ++  +V + LGPSL D L     R   +  V  L  Q++  V F+
Sbjct: 62  GTGIPNVR-WFGVEGDYNVLVMDLLGPSLED-LFNFCSRKLSLKTVLMLADQMINRVEFV 119

Query: 211 HELRLIHTDLKPENILL 227
           H    +H D+KP+N L+
Sbjct: 120 HSKSFLHRDIKPDNFLM 136

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 89.0 bits (221), Expect = 8e-20
 Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 47/192 (24%)

Query: 92  PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG 151
            ++ +  K+G G FG +   F   K E  A  +V+   +       E+   QR+A+ D  
Sbjct: 37  NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCI 96

Query: 152 GTRCVQIRN---------WF--------DYRNHICIVFEKLGPSLYDFLRKNSYRSFPID 194
                + +                     YR    +V E+LG  L     +N   +F   
Sbjct: 97  KKWIERKQLDYLGIPLFYGSGLTEFKGRSYR---FMVMERLGIDLQKISGQN--GTFKKS 151

Query: 195 LVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNL 254
            V +LG ++L+ + ++HE   +H D+K  N+LL                           
Sbjct: 152 TVLQLGIRMLDVLEYIHENEYVHGDIKAANLLL-------------------------GY 186

Query: 255 PKSSAIKLIDFG 266
                + L D+G
Sbjct: 187 KNPDQVYLADYG 198

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 90.7 bits (225), Expect = 1e-19
 Identities = 69/342 (20%), Positives = 117/342 (34%), Gaps = 67/342 (19%)

Query: 18  PRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPWRPDD 77
           P   P       P +P  K      C +  G         S    G  P  GSP      
Sbjct: 16  PDIDPLEALMTNPVVPESKRFCW-NCGRPVGRSDSETKGASE---GWCPYCGSPYSFLPQ 71

Query: 78  KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFD-NEKKELVAIKIVRSIN--KYREA 134
                    G+ +  +Y +   +  G  G +    D N     V +K +      + +  
Sbjct: 72  ------LNPGDIVAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAM 125

Query: 135 AMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC-----IVFEKL-GPSLYDFLRKNSY 188
           AM E   L  +    I     VQI N+ ++ +        IV E + G SL         
Sbjct: 126 AMAERQFLAEVVHPSI-----VQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKG---- 176

Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
           +  P+        ++L +++++H + L++ DLKPENI+L                 +++ 
Sbjct: 177 QKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIML-----------------TEEQ 219

Query: 249 SYFKNLPKSSAIKLIDFG---STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVG 305
                      +KLID G             Y+  T  ++APE++   G     D+++VG
Sbjct: 220 -----------LKLIDLGAVSRIN----SFGYLYGTPGFQAPEIVRT-GPTVATDIYTVG 263

Query: 306 CILVELCSGEALFQTHENLEHLAMMERVLGPLP--HHMVIRA 345
             L  L            ++ L   + VL        ++ RA
Sbjct: 264 RTLAALTLDLPTR-NGRYVDGLPEDDPVLKTYDSYGRLLRRA 304

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 64/343 (18%), Positives = 117/343 (34%), Gaps = 93/343 (27%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARHDI 150
                +G G FG+V  C      +L A K +        K  + AM+E  +L ++    I
Sbjct: 188 LDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFI 247

Query: 151 GGTRCVQIRNWFDYRNHICIVFE-----KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
                V +   F+ +  +C+V        +   +Y+    N    F          Q++ 
Sbjct: 248 -----VSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDN--PGFQEPRAIFYTAQIVS 300

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            +  +H+  +I+ DLKPEN+LL     V++ D       + +    +   K         
Sbjct: 301 GLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGL----AVELKAGQTKTK--------- 347

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH-ENL 324
               +          T  + APE++LG  +++  D +++G  L E+ +    F+   E +
Sbjct: 348 ---GY--------AGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV 396

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           E+  + +RVL                        + +PD  +                  
Sbjct: 397 ENKELKQRVL---------------------EQAVTYPDKFSP----------------- 418

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                       D  + LL+ DP +RL            HP F
Sbjct: 419 ---------ASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLF 452

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 88.3 bits (219), Expect = 2e-19
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 54/197 (27%)

Query: 92  PRYRILSKMGEGTFGQV--------VECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQ 143
            ++++ S       G +        + C    +K+  ++K+     +       E +  Q
Sbjct: 42  RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRL----FNEQNFFQ 97

Query: 144 RLARHD-------IGGTRCVQIRN--WF-----DYRNHICIVFEKLGPSLYDFLRKNSYR 189
           R A+         +  T  + I     F      YR    +V   LG SL   L  +   
Sbjct: 98  RAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYR---FLVLPSLGRSLQSALDVSPKH 154

Query: 190 SFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS 249
                 V ++  +LL+++ F+HE   +H ++  ENI +                      
Sbjct: 155 VLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFV---------------------- 192

Query: 250 YFKNLPKSSAIKLIDFG 266
              +    S + L  +G
Sbjct: 193 ---DPEDQSQVTLAGYG 206

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 87.4 bits (217), Expect = 2e-19
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 30/228 (13%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLARHD----- 149
               +G+G FGQ ++    E  E++ +K +   ++  +   + E+ V++ L  H      
Sbjct: 14  HGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCL-EHPNVLKF 72

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           IG     +          +  + E + G +L   ++      +P        + +   +A
Sbjct: 73  IGV--LYK-------DKRLNFITEYIKGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGMA 122

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKLIDFGS 267
           ++H + +IH DL   N L+   + V V D  F L+R   D        +S          
Sbjct: 123 YLHSMNIIHRDLNSHNCLVRENKNVVVAD--FGLARLMVDEKTQPEGLRSLKKPDRKKRY 180

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE 315
           T         VV   ++ APE+I G  ++   D++S G +L E+    
Sbjct: 181 T---------VVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRV 219

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 86.6 bits (215), Expect = 3e-19
 Identities = 76/357 (21%), Positives = 128/357 (35%), Gaps = 104/357 (29%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIV--RSINKYREAAMIEIDVLQRLARHDI 150
            Y +   +G G    V   +   KKE VAIK +         +  + EI  + +    +I
Sbjct: 16  DYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNI 75

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRE------LGRQL 203
                V     F  ++ + +V + L G S+ D ++    +      V +      + R++
Sbjct: 76  -----VSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREV 130

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           LE + ++H+   IH D+K  NILL                  +DGS          +++ 
Sbjct: 131 LEGLEYLHKNGQIHRDVKAGNILL-----------------GEDGS----------VQIA 163

Query: 264 DFG-----STTFEHQDHSY---VVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSG 314
           DFG     +T  +   +      V T  + APEV+    G+++  D+WS G   +EL +G
Sbjct: 164 DFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATG 223

Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV 374
            A                     P+H          KY                  M+ +
Sbjct: 224 AA---------------------PYH----------KY----------------PPMKVL 236

Query: 375 WKLLRL--PNLIMQHVDHSAG-----DLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
              L+   P+L     D             ++   L+ DP +R  A E LRH FF +
Sbjct: 237 MLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFFQK 293

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 87.1 bits (216), Expect = 8e-19
 Identities = 71/342 (20%), Positives = 118/342 (34%), Gaps = 90/342 (26%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHDIG 151
           IL  +G G F +V      +  ++ A+KI+    + K  E +    E DVL    R  I 
Sbjct: 65  ILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWI- 123

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                Q+   F   N++ +V E   G  L   L K   R  P ++ R    +++ ++  +
Sbjct: 124 ----TQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGER-IPAEMARFYLAEIVMAIDSV 178

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H L  +H D+KP+NILL    ++++ D+    +   DG                  S   
Sbjct: 179 HRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADG---------------TVRSLVA 223

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNY-------PCDLWSVGCILVELCSGEALFQTHEN 323
                   V T  Y +PE++  +G           CD W++G    E+  G+  F   ++
Sbjct: 224 --------VGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPF-YADS 274

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
                   +++    H+                  L  P                     
Sbjct: 275 TA--ETYGKIV----HYKE---------------HLSLPLVDEGVPE------------- 300

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERL---KAREALRHPFF 422
                     +  D +Q LL   P  RL    A +   HPFF
Sbjct: 301 ----------EARDFIQRLLC-PPETRLGRGGAGDFRTHPFF 331

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 85.1 bits (211), Expect = 3e-18
 Identities = 63/340 (18%), Positives = 123/340 (36%), Gaps = 94/340 (27%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHD- 149
            IL  +G+G+FG+V     N+ K++ A+K +      +  E      E+ ++Q L  H  
Sbjct: 18  EILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGL-EHPF 76

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           +     V +   F     + +V +  LG  L   L++N    F  + V+    +L+ ++ 
Sbjct: 77  L-----VNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALD 129

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG-S 267
           ++   R+IH D+KP+NILL         D        + G           + + DF  +
Sbjct: 130 YLQNQRIIHRDMKPDNILL---------D--------EHGH----------VHITDFNIA 162

Query: 268 TTFEHQDHSYVVS-TRHYRAPEVIL---GLGWNYPCDLWSVGCILVELCSGEALFQTHEN 323
                +     ++ T+ Y APE+     G G+++  D WS+G    EL  G   +    +
Sbjct: 163 AMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSS 222

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
                ++                            + +P   +                 
Sbjct: 223 TSSKEIVHTFE---------------------TTVVTYPSAWSQ---------------- 245

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERL-KAREALRHPFF 422
                     +++ LL+ LL  +P +R  +  +    P+ 
Sbjct: 246 ----------EMVSLLKKLLEPNPDQRFSQLSDVQNFPYM 275

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 69/340 (20%), Positives = 122/340 (35%), Gaps = 88/340 (25%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHDIG 151
           IL  +G G FG+V         ++ A+KI+    + K  E A    E DVL       I 
Sbjct: 78  ILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWI- 136

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
                 +   F   N++ +V +   G  L   L K   R  P ++ R    +++ ++  +
Sbjct: 137 ----TTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDR-LPEEMARFYLAEMVIAIDSV 191

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H+L  +H D+KP+NIL+    ++++ D+    +  +DG                  S+  
Sbjct: 192 HQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDG---------------TVQSSVA 236

Query: 271 EHQDHSYVVSTRHYRAPEVILGL-----GWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                   V T  Y +PE++  +      +   CD WS+G  + E+  GE  F   E+L 
Sbjct: 237 --------VGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPF-YAESLV 287

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
                 +++                       R  +P                       
Sbjct: 288 --ETYGKIM-------------------NHKERFQFP----------------------- 303

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERL---KAREALRHPFF 422
             V   + +  DL++ L+      RL      +  +HPFF
Sbjct: 304 TQVTDVSENAKDLIRRLIC-SREHRLGQNGIEDFKKHPFF 342

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 84.0 bits (208), Expect = 5e-18
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 58/209 (27%)

Query: 84  FAIGENLT----PRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSINKYREA 134
           FA+GE +T      +++   +G+G FG +     N            +K+  S N     
Sbjct: 23  FAVGEIITDMAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLF- 81

Query: 135 AMIEIDVLQRLARHDIGGTRCVQIRN---------WF--------DYRNHICIVFEKLGP 177
              E+   QR A+ +         +                     YR    ++ ++ G 
Sbjct: 82  --TELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYR---FMIMDRFGS 136

Query: 178 SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD 237
            L      N+ + F    V +L  ++L+ + ++HE   +H D+K  N+LL          
Sbjct: 137 DLQKIYEANA-KRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLL---------- 185

Query: 238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
                          N      + L+D+G
Sbjct: 186 ---------------NYKNPDQVYLVDYG 199

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 83.6 bits (207), Expect = 9e-18
 Identities = 68/339 (20%), Positives = 124/339 (36%), Gaps = 90/339 (26%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHDIG 151
           ++  +G G FG+V        +++ A+K++    + K  ++A    E D++       + 
Sbjct: 73  VVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWV- 131

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               VQ+   F    ++ +V E + G  L + +        P    R    +++ ++  +
Sbjct: 132 ----VQLFYAFQDDRYLYMVMEYMPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAI 184

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H +  IH D+KP+N+LL  + ++K+ D+    + +K+G                    T 
Sbjct: 185 HSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEG---------------MVRCDTA 229

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYP----CDLWSVGCILVELCSGEALFQTHENLEH 326
                   V T  Y +PEV+   G +      CD WSVG  L E+  G+  F   ++L  
Sbjct: 230 --------VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPF-YADSLV- 279

Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
                +++    +H                  L +PD                       
Sbjct: 280 -GTYSKIM----NHKN---------------SLTFPD----------------------- 296

Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLK---AREALRHPFF 422
             D S  +  +L+   L  D   RL      E  RH FF
Sbjct: 297 DNDISK-EAKNLICAFLT-DREVRLGRNGVEEIKRHLFF 333

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 57/253 (22%), Positives = 95/253 (37%), Gaps = 57/253 (22%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD--- 149
           I  K+G G+FG V     +     VA+KI+   +   +     + E+ +++RL RH    
Sbjct: 41  IKEKIGAGSFGTVHRAEWHGSD--VAVKILMEQDFHAERVNEFLREVAIMKRL-RHPNIV 97

Query: 150 --IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYR-SFPIDLVRELGRQLLE 205
             +G     Q         ++ IV E L   SLY  L K+  R          +   + +
Sbjct: 98  LFMGA--VTQ-------PPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148

Query: 206 SVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
            + ++H     ++H +LK  N+L+     VKV                            
Sbjct: 149 GMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKV---------------------------C 181

Query: 264 DFGSTTFEHQDHSYVVS---TRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT 320
           DFG +  +        S   T  + APEV+     N   D++S G IL EL + +  +  
Sbjct: 182 DFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPW-- 239

Query: 321 HENLEHLAMMERV 333
             NL    ++  V
Sbjct: 240 -GNLNPAQVVAAV 251

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 82.6 bits (205), Expect = 1e-17
 Identities = 68/346 (19%), Positives = 124/346 (35%), Gaps = 99/346 (28%)

Query: 92  PRYRI-----LSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVL 142
           P+Y +     L  +G G+FG+V            A+K+++   + + ++      E  +L
Sbjct: 1   PKYSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML 60

Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGR 201
             +  H       +++   F     I ++ + + G  L+  LRK   + FP  + +    
Sbjct: 61  SIV-THPF----IIRMWGTFQDAQQIFMIMDYIEGGELFSLLRK--SQRFPNPVAKFYAA 113

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           ++  ++ ++H   +I+ DLKPENILL    ++K+ D+ F                    K
Sbjct: 114 EVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGF-------------------AK 154

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
            +   + T           T  Y APEV+    +N   D WS G ++ E+ +G   F   
Sbjct: 155 YVPDVTYTL--------CGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPF-YD 205

Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
            N   +   E++L                      A L +P                   
Sbjct: 206 SN--TMKTYEKIL---------------------NAELRFP------------------- 223

Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                  +       DLL  L+  D ++RL        +   HP+F
Sbjct: 224 ----PFFNEDV---KDLLSRLITRDLSQRLGNLQNGTEDVKNHPWF 262

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 65/340 (19%), Positives = 129/340 (37%), Gaps = 82/340 (24%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHD 149
           + +L  +G G++ +V+     +   + A+K+V+   +N   +      E  V ++ + H 
Sbjct: 11  FDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHP 70

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 V + + F   + +  V E + G  L   +++   R  P +  R    ++  ++ 
Sbjct: 71  F----LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALN 124

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++HE  +I+ DLK +N+LL S  ++K+ DY       K+G              +  G T
Sbjct: 125 YLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM----CKEG--------------LRPGDT 166

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
           T      S    T +Y APE++ G  + +  D W++G ++ E+ +G + F    + ++  
Sbjct: 167 T------STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNP- 219

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
                            +     +                        +L     I + +
Sbjct: 220 ---------------DQNTEDYLF----------------------QVILEKQIRIPRSL 242

Query: 389 DHSAGDLIDLLQGLLRYDPAERL------KAREALRHPFF 422
              A     +L+  L  DP ERL         +   HPFF
Sbjct: 243 SVKA---ASVLKSFLNKDPKERLGCHPQTGFADIQGHPFF 279

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 84.3 bits (208), Expect = 1e-17
 Identities = 65/342 (19%), Positives = 121/342 (35%), Gaps = 96/342 (28%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARHD 149
           +  L  +G+G+FG+V+        EL A+KI++      +   E  M+E  VL    +  
Sbjct: 343 FNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPP 402

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                  Q+ + F   + +  V E + G  L   +++     F          ++   + 
Sbjct: 403 F----LTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQV--GRFKEPHAVFYAAEIAIGLF 456

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           F+    +I+ DLK +N++L S  ++K+ D+       K+               I  G T
Sbjct: 457 FLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM----CKEN--------------IWDGVT 498

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
           T           T  Y APE+I    +    D W+ G +L E+ +G+A F+  +  E   
Sbjct: 499 T------KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE--- 549

Query: 329 MMERVLG---PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
           + + ++      P  M                         S+++               
Sbjct: 550 LFQSIMEHNVAYPKSM-------------------------SKEA--------------- 569

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                     + + +GL+   P +RL       R+   H FF
Sbjct: 570 ----------VAICKGLMTKHPGKRLGCGPEGERDIKEHAFF 601

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 64/340 (18%), Positives = 129/340 (37%), Gaps = 82/340 (24%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHD 149
           + +L  +G G++ +V+     +   + A+++V+   +N   +      E  V ++ + H 
Sbjct: 54  FDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHP 113

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 V + + F   + +  V E + G  L   +++   R  P +  R    ++  ++ 
Sbjct: 114 F----LVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALN 167

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++HE  +I+ DLK +N+LL S  ++K+ DY       K+G              +  G T
Sbjct: 168 YLHERGIIYRDLKLDNVLLDSEGHIKLTDYGM----CKEG--------------LRPGDT 209

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
           T      S    T +Y APE++ G  + +  D W++G ++ E+ +G + F    + ++  
Sbjct: 210 T------STFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNP- 262

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
                            +     +                        +L     I + +
Sbjct: 263 ---------------DQNTEDYLF----------------------QVILEKQIRIPRSL 285

Query: 389 DHSAGDLIDLLQGLLRYDPAERL------KAREALRHPFF 422
              A     +L+  L  DP ERL         +   HPFF
Sbjct: 286 SVKA---ASVLKSFLNKDPKERLGCHPQTGFADIQGHPFF 322

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 81.5 bits (202), Expect = 3e-17
 Identities = 63/338 (18%), Positives = 120/338 (35%), Gaps = 92/338 (27%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHD 149
           + +   +G+G+FG+V      +  +  AIK ++   +    +    M+E  VL     H 
Sbjct: 19  FILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHP 78

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                   +   F  + ++  V E L G  L   ++      F +        +++  + 
Sbjct: 79  F----LTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGLQ 132

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           F+H   +++ DLK +NILL    ++K+ D+       K+               +   + 
Sbjct: 133 FLHSKGIVYRDLKLDNILLDKDGHIKIADFGM----CKEN--------------MLGDAK 174

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
           T     +++   T  Y APE++LG  +N+  D WS G +L E+  G++ F   +  E   
Sbjct: 175 T-----NTF-CGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE--- 225

Query: 329 MMERVLG---PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
           +   +       P  +                          +++               
Sbjct: 226 LFHSIRMDNPFYPRWL-------------------------EKEA--------------- 245

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALR-HPFF 422
                      DLL  L   +P +RL  R  +R HP F
Sbjct: 246 ----------KDLLVKLFVREPEKRLGVRGDIRQHPLF 273

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 80.0 bits (198), Expect = 5e-17
 Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 53/245 (21%)

Query: 95  RILSKMGEGTFGQVVE-CFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD- 149
            +  ++G G+FG V +  +  +    VA+K++       +  +A   E+ VL++  RH  
Sbjct: 27  TVGQRIGSGSFGTVYKGKWHGD----VAVKMLNVTAPTPQQLQAFKNEVGVLRKT-RHVN 81

Query: 150 ----IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
               +G +              + IV +   G SLY  L  +    F +  + ++ RQ  
Sbjct: 82  ILLFMGYST----------APQLAIVTQWCEGSSLYHHLHASE-TKFEMKKLIDIARQTA 130

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKLI 263
             + ++H   +IH DLK  NI L     VK+ D  F L+                     
Sbjct: 131 RGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGD--FGLAT-------------------- 168

Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQT 320
              S          +  +  + APEVI     N   +  D+++ G +L EL +G+  +  
Sbjct: 169 -EKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSN 227

Query: 321 HENLE 325
             N +
Sbjct: 228 INNRD 232

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 79/342 (23%), Positives = 131/342 (38%), Gaps = 96/342 (28%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHD 149
           +  L  +G+GTFG+V+   +       A+KI++   I    E A  + E  VLQ  +RH 
Sbjct: 150 FEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN-SRHP 208

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                   ++  F   + +C V E   G  L+  L +   R F  D  R  G +++ ++ 
Sbjct: 209 F----LTALKYSFQTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALD 262

Query: 209 FMHELR-LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
           ++H  + +++ DLK EN++L    ++K+ D+       K+G              I  G+
Sbjct: 263 YLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL----CKEG--------------IKDGA 304

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHENLE 325
           T            T  Y APEV+    +    D W +G ++ E+  G   F  Q HE L 
Sbjct: 305 TM------KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLF 358

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            L +ME +    P  +                           ++               
Sbjct: 359 ELILMEEI--RFPRTL-------------------------GPEA--------------- 376

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                       LL GLL+ DP +RL      A+E ++H FF
Sbjct: 377 ----------KSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFF 408

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 57/246 (23%)

Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--------INKY-REAAM 136
           IG+ +  RY+I+ K+G G    V    D      VAIK +          + ++ RE   
Sbjct: 5   IGKIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHN 64

Query: 137 IEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDL 195
                  +L+  +I     V + +  +  +   +V E + GP+L +++  +      +D 
Sbjct: 65  S-----SQLSHQNI-----VSMIDVDEEDDCYYLVMEYIEGPTLSEYIESH--GPLSVDT 112

Query: 196 VRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLP 255
                 Q+L+ +   H++R++H D+KP+NIL+                   + +      
Sbjct: 113 AINFTNQILDGIKHAHDMRIVHRDIKPQNILI-----------------DSNKT------ 149

Query: 256 KSSAIKLIDFG------STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV 309
               +K+ DFG       T+    +H  V+ T  Y +PE   G   +   D++S+G +L 
Sbjct: 150 ----LKIFDFGIAKALSETSLTQTNH--VLGTVQYFSPEQAKGEATDECTDIYSIGIVLY 203

Query: 310 ELCSGE 315
           E+  GE
Sbjct: 204 EMLVGE 209

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 79/344 (22%), Positives = 129/344 (37%), Gaps = 101/344 (29%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHD 149
           +  L  +G+GTFG+V+   +       A+KI+R   I    E A  + E  VLQ      
Sbjct: 7   FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN----- 61

Query: 150 IGGTRC---VQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
              TR      ++  F   + +C V E   G  L+  L +   R F  +  R  G +++ 
Sbjct: 62  ---TRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVS 116

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           ++ ++H   +++ D+K EN++L    ++K+ D+       K+G              I  
Sbjct: 117 ALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL----CKEG--------------ISD 158

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF--QTHEN 323
           G+T            T  Y APEV+    +    D W +G ++ E+  G   F  Q HE 
Sbjct: 159 GATM------KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER 212

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           L  L +ME +    P  +                         S ++             
Sbjct: 213 LFELILMEEI--RFPRTL-------------------------SPEA------------- 232

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                         LL GLL+ DP +RL      A+E + H FF
Sbjct: 233 ------------KSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFF 264

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 76/331 (22%), Positives = 130/331 (39%), Gaps = 89/331 (26%)

Query: 101 GEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHDIGGTRCV 156
           G+G+FG+V+      ++   A+K+++  +I K +E    M E +VL +  +H       V
Sbjct: 47  GKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPF----LV 102

Query: 157 QIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRL 215
            +   F   + +  V + + G  L+  L++   R F     R    ++  ++ ++H L +
Sbjct: 103 GLHFSFQTADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSLNI 160

Query: 216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH 275
           ++ DLKPENILL S  ++ + D+       K+               I+  STT      
Sbjct: 161 VYRDLKPENILLDSQGHIVLTDFGL----CKEN--------------IEHNSTT------ 196

Query: 276 SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLG 335
           S    T  Y APEV+    ++   D W +G +L E+  G   F +    E   M + +L 
Sbjct: 197 STFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE---MYDNILN 253

Query: 336 PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL 395
                                                   K L+L      ++ +SA   
Sbjct: 254 ----------------------------------------KPLQLK----PNITNSA--- 266

Query: 396 IDLLQGLLRYDPAERL----KAREALRHPFF 422
             LL+GLL+ D  +RL       E   H FF
Sbjct: 267 RHLLEGLLQKDRTKRLGAKDDFMEIKSHVFF 297

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 79.2 bits (196), Expect = 2e-16
 Identities = 64/342 (18%), Positives = 119/342 (34%), Gaps = 96/342 (28%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHD 149
           +  L  +G+G+FG+V+        EL A+KI++   + +  +    M+E  VL    +  
Sbjct: 22  FNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPP 81

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                  Q+ + F   + +  V E + G  L           F          ++   + 
Sbjct: 82  F----LTQLHSCFQTMDRLYFVMEYVNGGDL--MYHIQQVGRFKEPHAVFYAAEIAIGLF 135

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           F+    +I+ DLK +N++L S  ++K+ D+       K+               I  G T
Sbjct: 136 FLQSKGIIYRDLKLDNVMLDSEGHIKIADFGM----CKEN--------------IWDGVT 177

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
           T           T  Y APE+I    +    D W+ G +L E+ +G+A F   E+ +   
Sbjct: 178 T------KTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPF-EGEDEDE-- 228

Query: 329 MMERVLG---PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
           + + ++      P  M                         S+++               
Sbjct: 229 LFQSIMEHNVAYPKSM-------------------------SKEA--------------- 248

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                     + + +GL+   P +RL       R+   H FF
Sbjct: 249 ----------VAICKGLMTKHPGKRLGCGPEGERDIKEHAFF 280

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 67/343 (19%), Positives = 121/343 (35%), Gaps = 97/343 (28%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAA--MIEIDVLQRLARHD 149
           +  +  +G+G+FG+V+     E  +L A+K+++   I +  +    M E  +L     H 
Sbjct: 25  FEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHP 84

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                  Q+   F   + +  V E + G  L         R F     R    +++ ++ 
Sbjct: 85  F----LTQLFCCFQTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEARARFYAAEIISALM 138

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           F+H+  +I+ DLK +N+LL    + K+ D+  +    K+G              I  G T
Sbjct: 139 FLHDKGIIYRDLKLDNVLLDHEGHCKLADF-GM---CKEG--------------ICNGVT 180

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
           T      +    T  Y APE++  + +    D W++G +L E+  G A F+     +   
Sbjct: 181 T------ATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD--- 231

Query: 329 MMERVLG---PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
           + E +L      P  +                           D+               
Sbjct: 232 LFEAILNDEVVYPTWL-------------------------HEDA--------------- 251

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERL------KAREALRHPFF 422
                       +L+  +  +P  RL           LRHPFF
Sbjct: 252 ----------TGILKSFMTKNPTMRLGSLTQGGEHAILRHPFF 284

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 77.3 bits (191), Expect = 6e-16
 Identities = 57/273 (20%), Positives = 93/273 (34%), Gaps = 65/273 (23%)

Query: 63  GAIPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAI 122
           G +PR        + ++G   F         YR+   +G G  G V E  D  ++ +VA+
Sbjct: 13  GLVPRGSHMDGTAESREG-TQFG-------PYRLRRLVGRGGMGDVYEAEDTVRERIVAL 64

Query: 123 KIVRS--------INKY-REAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFE 173
           K++            +  REA         RL    +     V I ++ +    + +   
Sbjct: 65  KLMSETLSSDPVFRTRMQREA-----RTAGRLQEPHV-----VPIHDFGEIDGQLYVDMR 114

Query: 174 KL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEY 232
            + G  L   LR+             + RQ+  ++   H     H D+KPENIL+     
Sbjct: 115 LINGVDLAAMLRRQG--PLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILV----- 167

Query: 233 VKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG------STTFEHQDHSYVVSTRHYRA 286
                       S D              L+DFG                  V T +Y A
Sbjct: 168 ------------SADD----------FAYLVDFGIASATTDEKLTQ--LGNTVGTLYYMA 203

Query: 287 PEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
           PE        Y  D++++ C+L E  +G   +Q
Sbjct: 204 PERFSESHATYRADIYALTCVLYECLTGSPPYQ 236

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 77.5 bits (191), Expect = 7e-16
 Identities = 61/310 (19%), Positives = 115/310 (37%), Gaps = 70/310 (22%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD-----I 150
           +   +G+G FG+V       + E VA+KI  S  +       EI     L RH+     I
Sbjct: 46  LQESIGKGRFGEV--WRGKWRGEEVAVKIFSSREERSWFREAEIYQTVML-RHENILGFI 102

Query: 151 GGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                            + +V +  + G SL+D+L + +     ++ + +L       +A
Sbjct: 103 AADNKDN-----GTWTQLWLVSDYHEHG-SLFDYLNRYT---VTVEGMIKLALSTASGLA 153

Query: 209 FMHELRL--------IHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSA 259
            +H   +         H DLK +NIL+       + D    L+               SA
Sbjct: 154 HLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD--LGLAVR-----------HDSA 200

Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYP------CDLWSVGCILVELCS 313
              ID              V T+ Y APEV+               D++++G +  E+  
Sbjct: 201 TDTIDIAPNH--------RVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR 252

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYF----RRGARLDWPDGATSRD 369
             ++   HE+ +           LP++ ++ +D   E+       +  R + P+   S +
Sbjct: 253 RCSIGGIHEDYQ-----------LPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCE 301

Query: 370 SMRAVWKLLR 379
           ++R + K++R
Sbjct: 302 ALRVMAKIMR 311

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 76.6 bits (189), Expect = 8e-16
 Identities = 58/310 (18%), Positives = 108/310 (34%), Gaps = 70/310 (22%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD-----I 150
           +L  +G+G +G+V     + + E VA+KI  S ++       E+     L RH+     I
Sbjct: 12  LLECVGKGRYGEVWRG--SWQGENVAVKIFSSRDEKSWFRETELYNTVML-RHENILGFI 68

Query: 151 GGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
                 +          + ++    ++G SLYD+L+  +           +   +   +A
Sbjct: 69  ASDMTSR-----HSSTQLWLITHYHEMG-SLYDYLQLTT---LDTVSCLRIVLSIASGLA 119

Query: 209 FMHELRL--------IHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSA 259
            +H             H DLK +NIL+       + D    L+              S +
Sbjct: 120 HLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIAD--LGLAVM-----------HSQS 166

Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYP------CDLWSVGCILVELCS 313
              +D G+           V T+ Y APEV+               D+W+ G +L E+  
Sbjct: 167 TNQLDVGNNP--------RVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVAR 218

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYF----RRGARLDWPDGATSRD 369
                   E+ +            P + V+  D   E           R + P+   S  
Sbjct: 219 RMVSNGIVEDYK-----------PPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDP 267

Query: 370 SMRAVWKLLR 379
           ++ ++ KL++
Sbjct: 268 TLTSLAKLMK 277

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 69/255 (27%)

Query: 86  IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS--------INKY-REAAM 136
              +L+ RY +   +G G   +V    D      VA+K++R+          ++ REA  
Sbjct: 6   TPSHLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREA-- 63

Query: 137 IEIDVLQRLAR---------HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKN 186
                 Q  A          +D G          +       IV E + G +L D +   
Sbjct: 64  ------QNAAALNHPAIVAVYDTGEAETPAGPLPY-------IVMEYVDGVTLRDIVHTE 110

Query: 187 SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK 246
                      E+     +++ F H+  +IH D+KP NI++                 S 
Sbjct: 111 --GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMI-----------------SA 151

Query: 247 DGSYFKNLPKSSAIKLIDFG------STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCD 300
                       A+K++DFG       +       + V+ T  Y +PE   G   +   D
Sbjct: 152 TN----------AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSD 201

Query: 301 LWSVGCILVELCSGE 315
           ++S+GC+L E+ +GE
Sbjct: 202 VYSLGCVLYEVLTGE 216

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 67/340 (19%), Positives = 124/340 (36%), Gaps = 95/340 (27%)

Query: 101 GEGTFGQVV---ECFDNEKKELVAIKIVR-----SINKYREAAMIEIDVLQRLARHD-IG 151
           G G +G+V    +   ++  +L A+K+++        K  E    E  VL+ + +   + 
Sbjct: 63  GTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFL- 121

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               V +   F     + ++ + + G  L+  L +     F    V+    +++ ++  +
Sbjct: 122 ----VTLHYAFQTETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEIVLALEHL 175

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H+L +I+ D+K ENILL S  +V + D+      SK+              + D      
Sbjct: 176 HKLGIIYRDIKLENILLDSNGHVVLTDFGL----SKEF-------------VADETERA- 217

Query: 271 EHQDHSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGEALFQT-HENLEHL 327
               + +   T  Y AP+++ G   G +   D WS+G ++ EL +G + F    E     
Sbjct: 218 ----YDF-CGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQA 272

Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
            +  R+L                      +   +P   ++                    
Sbjct: 273 EISRRIL---------------------KSEPPYPQEMSA-------------------- 291

Query: 388 VDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                    DL+Q LL  DP +RL      A E   H FF
Sbjct: 292 ------LAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFF 325

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 35/254 (13%), Positives = 81/254 (31%), Gaps = 60/254 (23%)

Query: 96  ILSKMGEGTFGQVVE--CFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD- 149
            L+K+ E   G++ +     N+    + +K+++  +   +       E   L+    H  
Sbjct: 14  FLTKLNENHSGELWKGRWQGND----IVVKVLKVRDWSTRKSRDFNEECPRLRIF-SHPN 68

Query: 150 ----IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
               +G   C           H  ++   +   SLY+ L + +          +    + 
Sbjct: 69  VLPVLGA--CQS-----PPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMA 121

Query: 205 ESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
             +AF+H L   +    L   ++++                  +D +           ++
Sbjct: 122 RGMAFLHTLEPLIPRHALNSRSVMI-----------------DEDMT----------ARI 154

Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYP---CDLWSVGCILVELCSGEALFQ 319
                           +    + APE +     +      D+WS   +L EL + E  F 
Sbjct: 155 SMADVKFSFQSPG--RMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPF- 211

Query: 320 THENLEHLAMMERV 333
              +L ++ +  +V
Sbjct: 212 --ADLSNMEIGMKV 223

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 74.9 bits (185), Expect = 4e-15
 Identities = 72/346 (20%), Positives = 136/346 (39%), Gaps = 103/346 (29%)

Query: 95  RILSKMGEGTFGQVV---ECFDNEKKELVAIKIVRS---INKYREAA--MIEIDVLQRLA 146
            +L  +G+G +G+V    +       ++ A+K+++    +   ++ A    E ++L+   
Sbjct: 20  ELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEE-V 78

Query: 147 RHD-IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
           +H  I     V +   F     + ++ E L G  L+  L +     F  D       ++ 
Sbjct: 79  KHPFI-----VDLIYAFQTGGKLYLILEYLSGGELFMQLERE--GIFMEDTACFYLAEIS 131

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
            ++  +H+  +I+ DLKPENI+L    +VK+ D+       K+               I 
Sbjct: 132 MALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGL----CKES--------------IH 173

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
            G+ T     H++   T  Y APE+++  G N   D WS+G ++ ++ +G   F T EN 
Sbjct: 174 DGTVT-----HTFC-GTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPF-TGENR 226

Query: 325 EHLAMMERVLG---PLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
           +    ++++L     LP ++                         ++++           
Sbjct: 227 K--KTIDKILKCKLNLPPYL-------------------------TQEA----------- 248

Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
                          DLL+ LL+ + A RL      A E   HPFF
Sbjct: 249 --------------RDLLKKLLKRNAASRLGAGPGDAGEVQAHPFF 280

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 74.7 bits (184), Expect = 5e-15
 Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 56/257 (21%)

Query: 96  ILSKMGEGTFGQVVE-CFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD-- 149
           I   +G+G FGQV    +  E    VAI+++          +A   E+   ++  RH+  
Sbjct: 37  IGELIGKGRFGQVYHGRWHGE----VAIRLIDIERDNEDQLKAFKREVMAYRQT-RHENV 91

Query: 150 ---IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
              +G   C+          H+ I+     G +LY  +R        ++  R++ +++++
Sbjct: 92  VLFMGA--CMS-------PPHLAIITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVK 141

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKLID 264
            + ++H   ++H DLK +N+       V + D  F L   S      +            
Sbjct: 142 GMGYLHAKGILHKDLKSKNV-FYDNGKVVITD--FGLFSISGVLQAGRR----------- 187

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYP---------CDLWSVGCILVELCSGE 315
                              + APE+I  L  +            D++++G I  EL + E
Sbjct: 188 -------EDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHARE 240

Query: 316 ALFQTHENLEHLAMMER 332
             F+T      +  M  
Sbjct: 241 WPFKTQPAEAIIWQMGT 257

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 74.4 bits (183), Expect = 7e-15
 Identities = 58/311 (18%), Positives = 110/311 (35%), Gaps = 72/311 (23%)

Query: 96  ILSKMGEGTFGQVVEC-FDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD----- 149
           ++ ++G+G +G+V    +  EK   VA+K+  +  +       EI     + RH+     
Sbjct: 41  MVKQIGKGRYGEVWMGKWRGEK---VAVKVFFTTEEASWFRETEIYQTVLM-RHENILGF 96

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           I     ++          + ++ +  + G SLYD+L+  +        + +L    +  +
Sbjct: 97  IAA--DIKGTG---SWTQLYLITDYHENG-SLYDYLKSTT---LDAKSMLKLAYSSVSGL 147

Query: 208 AFMHELRL--------IHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSS 258
             +H             H DLK +NIL+       + D    L+               S
Sbjct: 148 CHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIAD--LGLAVK-----------FIS 194

Query: 259 AIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYP------CDLWSVGCILVELC 312
               +D    T         V T+ Y  PEV+               D++S G IL E+ 
Sbjct: 195 DTNEVDIPPNT--------RVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVA 246

Query: 313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYF----RRGARLDWPDGATSR 368
                    E  +           LP+H ++ +D   E        +  R  +P+  +S 
Sbjct: 247 RRCVSGGIVEEYQ-----------LPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSD 295

Query: 369 DSMRAVWKLLR 379
           + +R + KL+ 
Sbjct: 296 ECLRQMGKLMT 306

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 73.7 bits (182), Expect = 9e-15
 Identities = 79/351 (22%), Positives = 127/351 (36%), Gaps = 117/351 (33%)

Query: 96  ILSKMGEGTFGQVV---ECFDNEKKELVAIKIVRS---INKYREAAMIEIDVLQRLARHD 149
           +L  +G+G+FG+V    +   ++ ++L A+K+++      + R    +E D+L     H 
Sbjct: 28  LLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVE-VNHP 86

Query: 150 -IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            I     V++   F     + ++ + L G  L+  L K     F  + V+    +L  ++
Sbjct: 87  FI-----VKLHYAFQTEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALAL 139

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
             +H L +I+ DLKPENILL                  ++G           IKL DFG 
Sbjct: 140 DHLHSLGIIYRDLKPENILL-----------------DEEGH----------IKLTDFGL 172

Query: 267 ----------STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA 316
                     + +F          T  Y APEV+   G     D WS G ++ E+ +G  
Sbjct: 173 SKESIDHEKKAYSF--------CGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 224

Query: 317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK 376
            FQ  +  E    M  +L                                          
Sbjct: 225 PFQGKDRKE---TMTMILK----------------------------------------A 241

Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERL-----KAREALRHPFF 422
            L +P    Q +   A     LL+ L + +PA RL        E  RH FF
Sbjct: 242 KLGMP----QFLSPEA---QSLLRMLFKRNPANRLGAGPDGVEEIKRHSFF 285

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 68/302 (22%), Positives = 113/302 (37%), Gaps = 64/302 (21%)

Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L +HD
Sbjct: 44  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL-QHD 102

Query: 150 -----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                 G   C         R ++ ++ E    G SL D+L+K+  R   I L+ +   Q
Sbjct: 103 NIVKYKG--VCYS-----AGRRNLKLIMEYLPYG-SLRDYLQKHKERIDHIKLL-QYTSQ 153

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           + + + ++   R IH DL   NIL+ +   VK+                           
Sbjct: 154 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIG-------------------------- 187

Query: 263 IDFGSTTFEHQDHSYVVSTRHYR------APEVILGLGWNYPCDLWSVGCILVELCSGEA 316
            DFG T    QD  Y              APE +    ++   D+WS G +L EL +   
Sbjct: 188 -DFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE 246

Query: 317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR--DSMRAV 374
             ++        +     G +    +I       +  +   RL  PDG        M   
Sbjct: 247 KSKSPPAEFMRMIGNDKQGQMIVFHLI-------ELLKNNGRLPRPDGCPDEIYMIMTEC 299

Query: 375 WK 376
           W 
Sbjct: 300 WN 301

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 66/299 (22%), Positives = 115/299 (38%), Gaps = 58/299 (19%)

Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD 149
           + L ++G+G FG V  C      +   E+VA+K ++ S  ++      EI++L+ L +HD
Sbjct: 13  KFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSL-QHD 71

Query: 150 IGGTRCVQIRN--WFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
                 V+ +   +   R ++ ++ E    G SL D+L+K+  R   I L+ +   Q+ +
Sbjct: 72  ----NIVKYKGVCYSAGRRNLKLIMEYLPYG-SLRDYLQKHKERIDHIKLL-QYTSQICK 125

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            + ++   R IH DL   NIL+ +   VK+                            DF
Sbjct: 126 GMEYLGTKRYIHRDLATRNILVENENRVKIG---------------------------DF 158

Query: 266 GSTTFEHQDHSYVVSTRHYR------APEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
           G T    QD  +              APE +    ++   D+WS G +L EL +     +
Sbjct: 159 GLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSK 218

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR--DSMRAVWK 376
           +        +     G +    +I       +  +   RL  PDG        M   W 
Sbjct: 219 SPPAEFMRMIGNDKQGQMIVFHLI-------ELLKNNGRLPRPDGCPDEIYMIMTECWN 270

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 49/247 (19%), Positives = 98/247 (39%), Gaps = 44/247 (17%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD----- 149
            +  K+G G +G+V E    +    VA+K ++      E  + E  V++ + +H      
Sbjct: 223 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-KHPNLVQL 281

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           +G   C +            I+ E    G +L D+LR+ + +     ++  +  Q+  ++
Sbjct: 282 LG--VCTR-------EPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAM 331

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKLIDFG 266
            ++ +   IH +L   N L+     VKV D  F LSR     +Y  +      IK     
Sbjct: 332 EYLEKKNFIHRNLAARNCLVGENHLVKVAD--FGLSRLMTGDTYTAHAGAKFPIKWT--- 386

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE 325
                              APE +    ++   D+W+ G +L E+ + G + +   +  +
Sbjct: 387 -------------------APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ 427

Query: 326 HLAMMER 332
              ++E+
Sbjct: 428 VYELLEK 434

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 58/316 (18%), Positives = 107/316 (33%), Gaps = 72/316 (22%)

Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD- 149
           +   ++L     G FG V +       E VA+KI    +K       E+  L  + +H+ 
Sbjct: 23  SMPLQLLEVKARGRFGCVWKAQLLN--EYVAVKIFPIQDKQSWQNEYEVYSLPGM-KHEN 79

Query: 150 ----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
               IG     +  +       + ++    + G SL DFL+ N       + +  +   +
Sbjct: 80  ILQFIGA--EKRGTS---VDVDLWLITAFHEKG-SLSDFLKANV---VSWNELCHIAETM 130

Query: 204 LESVAFMHE----------LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
              +A++HE            + H D+K +N+LL                   + +    
Sbjct: 131 ARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLL-----------------KNNLT---- 169

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVS-----TRHYRAPEVILG-LGWNYP----CDLWS 303
                   + DFG         S   +     TR Y APEV+ G + +        D+++
Sbjct: 170 ------ACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYA 223

Query: 304 VGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPD 363
           +G +L EL S           E++   E  +G  P    ++     E    +  R    D
Sbjct: 224 MGLVLWELASRCTAA-DGPVDEYMLPFEEEIGQHPSLEDMQ-----EVVVHKKKRPVLRD 277

Query: 364 GATSRDSMRAVWKLLR 379
                  M  + + + 
Sbjct: 278 YWQKHAGMAMLCETIE 293

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 69.5 bits (169), Expect = 3e-13
 Identities = 55/259 (21%), Positives = 85/259 (32%), Gaps = 62/259 (23%)

Query: 91  TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---------SINKYREAAMIEIDV 141
           T + +   K+GEG FG+V +         VAIKI+          S  K  E  + EI +
Sbjct: 19  TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIII 76

Query: 142 LQRLARHDIG------------GTRCVQ-------IRNWFDYRN---------------- 166
            + L+                    CVQ       ++ W  Y +                
Sbjct: 77  SKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQ 136

Query: 167 -HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPEN 224
             I + FE  G  L     K S     +   + +  QL  S+A     LR  H DL   N
Sbjct: 137 LFIVLEFEFGGIDLEQMRTKLS----SLATAKSILHQLTASLAVAEASLRFEHRDLHWGN 192

Query: 225 ILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHY 284
           +LL      K+  Y    +SS   S          + +ID+  +  E             
Sbjct: 193 VLLKKTSLKKL-HYTLNGKSSTIPSC------GLQVSIIDYTLSRLERDGIVVFCDV--S 243

Query: 285 RAPEVILGLGWNYPCDLWS 303
              ++  G G +Y  D++ 
Sbjct: 244 MDEDLFTGDG-DYQFDIYR 261

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 62/304 (20%), Positives = 106/304 (34%), Gaps = 68/304 (22%)

Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARH 148
           + +  +GEG FG+V  C      +   E VA+K ++  S   +      EI++L+ L  H
Sbjct: 24  KRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL-YH 82

Query: 149 D-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGR 201
           +      G   C +     D  N I ++ E    G SL ++L KN  +      + +   
Sbjct: 83  ENIVKYKG--ICTE-----DGGNGIKLIMEFLPSG-SLKEYLPKNKNKINLKQQL-KYAV 133

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
           Q+ + + ++   + +H DL   N+L+ S   VK+                          
Sbjct: 134 QICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIG------------------------- 168

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYR------APEVILGLGWNYPCDLWSVGCILVELCS-G 314
             DFG T     D  Y              APE ++   +    D+WS G  L EL +  
Sbjct: 169 --DFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYC 226

Query: 315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR--DSMR 372
           ++          +       G +    ++          + G RL  P          MR
Sbjct: 227 DSDSSPMALFLKMIGPTH--GQMTVTRLV-------NTLKEGKRLPCPPNCPDEVYQLMR 277

Query: 373 AVWK 376
             W+
Sbjct: 278 KCWE 281

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 65/300 (21%), Positives = 109/300 (36%), Gaps = 61/300 (20%)

Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVRSINKYREAAMI-EIDVLQRLARHD 149
           + +S++G+G FG V  C      +    LVA+K ++     ++     EI +L+ L   D
Sbjct: 26  KYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKAL-HSD 84

Query: 150 IGGTRCVQIRN--WFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
                 V+ R   +   R  + +V E    G  L DFL+++  R     L+     Q+ +
Sbjct: 85  ----FIVKYRGVSYGPGRQSLRLVMEYLPSG-CLRDFLQRHRARLDASRLL-LYSSQICK 138

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            + ++   R +H DL   NIL+ S  +VK+                            DF
Sbjct: 139 GMEYLGSRRCVHRDLAARNILVESEAHVKIA---------------------------DF 171

Query: 266 GSTTFEHQDHSYVVSTRHYR------APEVILGLGWNYPCDLWSVGCILVELCS-GEALF 318
           G       D  Y V     +      APE +    ++   D+WS G +L EL +  +   
Sbjct: 172 GLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSC 231

Query: 319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR--DSMRAVWK 376
                 E L MM           ++       +    G RL  P    +   + M+  W 
Sbjct: 232 SPSA--EFLRMMGCERDVPALSRLL-------ELLEEGQRLPAPPACPAEVHELMKLCWA 282

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 66/245 (26%), Positives = 103/245 (42%), Gaps = 42/245 (17%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 187 RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 240

Query: 155 CVQIRNWFDY----RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
            VQ+     Y       I IV E +   SL DFL+  + +   +  + ++  Q+   +A+
Sbjct: 241 LVQL-----YAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY 295

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           +  +  +H DL+  NIL+      KV D  F L+R  +D  Y         IK       
Sbjct: 296 VERMNYVHRDLRAANILVGENLVCKVAD--FGLARLIEDNEYTARQGAKFPIKWT----- 348

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHL 327
                            APE  L   +    D+WS G +L EL + G   +    N E L
Sbjct: 349 -----------------APEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVL 391

Query: 328 AMMER 332
             +ER
Sbjct: 392 DQVER 396

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 66.4 bits (162), Expect = 5e-12
 Identities = 66/245 (26%), Positives = 103/245 (42%), Gaps = 42/245 (17%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L RH+    +
Sbjct: 270 RLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKL-RHE----K 323

Query: 155 CVQIRNWFDY----RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
            VQ+     Y       I IV E +   SL DFL+  + +   +  + ++  Q+   +A+
Sbjct: 324 LVQL-----YAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY 378

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           +  +  +H DL+  NIL+      KV D  F L+R  +D  Y         IK       
Sbjct: 379 VERMNYVHRDLRAANILVGENLVCKVAD--FGLARLIEDNEYTARQGAKFPIKWT----- 431

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHL 327
                            APE  L   +    D+WS G +L EL + G   +    N E L
Sbjct: 432 -----------------APEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVL 474

Query: 328 AMMER 332
             +ER
Sbjct: 475 DQVER 479

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 13/159 (8%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           ++  K+G G FG+V     N+  + VA+K ++  +   EA + E +V++ L +HD    +
Sbjct: 191 KLEKKLGAGQFGEVWMATYNKHTK-VAVKTMKPGSMSVEAFLAEANVMKTL-QHD----K 244

Query: 155 CVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            V++      +  I I+ E    G SL DFL+ +     P+  + +   Q+ E +AF+ +
Sbjct: 245 LVKLHAVV-TKEPIYIITEFMAKG-SLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQ 302

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSY 250
              IH DL+  NIL+ ++   K+ D  F L+R  +D  Y
Sbjct: 303 RNYIHRDLRAANILVSASLVCKIAD--FGLARVIEDNEY 339

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 65.2 bits (159), Expect = 8e-12
 Identities = 51/259 (19%), Positives = 84/259 (32%), Gaps = 54/259 (20%)

Query: 96  ILSKMGEGTFGQVVEC-FDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD----- 149
           +L  +G G +G V +   D      VA+K+    N+        I  +  +  HD     
Sbjct: 17  LLELIGRGRYGAVYKGSLDERP---VAVKVFSFANRQNFINEKNIYRVPLM-EHDNIARF 72

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           I G      R   D R    +V E    G SL  +L  ++           L   +   +
Sbjct: 73  IVGD----ERVTADGRMEYLLVMEYYPNG-SLXKYLSLHT---SDWVSSCRLAHSVTRGL 124

Query: 208 AFMHE---------LRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKS 257
           A++H            + H DL   N+L+ +     + D  F LS         +   + 
Sbjct: 125 AYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISD--FGLSMRLTGNRLVRPGEED 182

Query: 258 SAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-------GWNYPCDLWSVGCILVE 310
           +A                   V T  Y APEV+ G              D++++G I  E
Sbjct: 183 NA---------------AISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWE 227

Query: 311 LCSGEALFQTHENLEHLAM 329
           +          E++    M
Sbjct: 228 IFMRCTDLFPGESVPEYQM 246

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 67/287 (23%), Positives = 114/287 (39%), Gaps = 62/287 (21%)

Query: 95  RILSKMGEGTFGQVVEC----FDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARH 148
           + +  +GEG FG+V        ++   E+VA+K +++    ++R     EID+L+ L  H
Sbjct: 34  KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL-YH 92

Query: 149 D-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGR 201
           +      G   C            + +V E   LG SL D+L ++S       L+    +
Sbjct: 93  EHIIKYKG--CCED-----AGAASLQLVMEYVPLG-SLRDYLPRHSIG--LAQLL-LFAQ 141

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGS--YFKNLPKSS 258
           Q+ E +A++H    IH DL   N+LL +   VK+ D  F L+++  +G   Y       S
Sbjct: 142 QICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGD--FGLAKAVPEGHEYYRVREDGDS 199

Query: 259 AIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEAL 317
            +                       + APE +    + Y  D+WS G  L EL +  ++ 
Sbjct: 200 PVF----------------------WYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSS 237

Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDG 364
                    L  + +  G +    +        +   RG RL  PD 
Sbjct: 238 QSPPTKFLELIGIAQ--GQMTVLRLT-------ELLERGERLPRPDK 275

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 21/166 (12%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD----- 149
            +  K+G G +G+V E    +    VA+K ++      E  + E  V++ + +H      
Sbjct: 16  TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI-KHPNLVQL 74

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           +G   C +            I+ E    G +L D+LR+ + +     ++  +  Q+  ++
Sbjct: 75  LG--VCTR-------EPPFYIITEFMTYG-NLLDYLRECNRQEVSAVVLLYMATQISSAM 124

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFK 252
            ++ +   IH DL   N L+     VKV D  F LSR     +Y  
Sbjct: 125 EYLEKKNFIHRDLAARNCLVGENHLVKVAD--FGLSRLMTGDTYTA 168

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 59/252 (23%), Positives = 97/252 (38%), Gaps = 51/252 (20%)

Query: 95  RILSKMGEGTFGQVVE---CFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHD 149
            +   +GEG FG V +            VAIK  +  + +  RE  + E   +++   H 
Sbjct: 393 ELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQF-DHP 451

Query: 150 -----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                IG     +        N + I+ E   LG  L  FL+   +      L+     Q
Sbjct: 452 HIVKLIG--VITE--------NPVWIIMELCTLG-ELRSFLQVRKFSLDLASLI-LYAYQ 499

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIK 261
           L  ++A++   R +H D+   N+L+ S + VK+ D  F LSR  +D +Y+K       IK
Sbjct: 500 LSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGD--FGLSRYMEDSTYYKASKGKLPIK 557

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQT 320
            +                      APE I    +    D+W  G  + E+   G   FQ 
Sbjct: 558 WM----------------------APESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG 595

Query: 321 HENLEHLAMMER 332
            +N + +  +E 
Sbjct: 596 VKNNDVIGRIEN 607

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 42/283 (14%), Positives = 66/283 (23%), Gaps = 81/283 (28%)

Query: 66  PRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIV 125
             + +PP       G  +         RYR+L   G     Q  +  D      VA+  V
Sbjct: 11  RESSAPPDDVQLVPGARI------ANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFV 64

Query: 126 RSINK---------YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL- 175
                                      RL+R  I      ++ +    R    +V E + 
Sbjct: 65  DPQGVLPDDVLQETLSRT--------LRLSR--IDKPGVARVLDVVHTRAGGLVVAEWIR 114

Query: 176 GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV 235
           G SL +          P+  +R   + L  +    H   +  +   P  + +        
Sbjct: 115 GGSLQEVADT---SPSPVGAIR-AMQSLAAAADAAHRAGVALSIDHPSRVRV-------- 162

Query: 236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGW 295
                    S DG           + L                                 
Sbjct: 163 ---------SIDG----------DVVLAYPA-----------------TMPDA------- 179

Query: 296 NYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLP 338
           N   D+  +G  L  L               LA  ER     P
Sbjct: 180 NPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQP 222

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 24/166 (14%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHD--- 149
            +  ++G G FG+V          LVA+K  R       +   + E  +L++   H    
Sbjct: 117 VLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQY-SHPNIV 175

Query: 150 --IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
             IG   C Q       +  I IV E  + G     FLR    R     L+ ++      
Sbjct: 176 RLIG--VCTQ-------KQPIYIVMELVQGG-DFLTFLRTEGARLRVKTLL-QMVGDAAA 224

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSY 250
            + ++     IH DL   N L+     +K+ D  F +SR   DG Y
Sbjct: 225 GMEYLESKCCIHRDLAARNCLVTEKNVLKISD--FGMSREEADGVY 268

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 60/256 (23%), Positives = 98/256 (38%), Gaps = 59/256 (23%)

Query: 95  RILSKMGEGTFGQVVE---CFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHD 149
            +   +GEG FG V +            VAIK  +  + +  RE  + E   +++   H 
Sbjct: 18  ELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF-DHP 76

Query: 150 IGGTRCVQIRNWFDY----RNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
                 V++           N + I+ E   LG  L  FL+   Y      L+     QL
Sbjct: 77  ----HIVKL-----IGVITENPVWIIMELCTLG-ELRSFLQVRKYSLDLASLI-LYAYQL 125

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKL 262
             ++A++   R +H D+   N+L+ S + VK+ D  F LSR  +D +Y+K       IK 
Sbjct: 126 STALAYLESKRFVHRDIAARNVLVSSNDCVKLGD--FGLSRYMEDSTYYKASKGKLPIKW 183

Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNY-----PCDLWSVGCILVELCS-GEA 316
           +                      APE I     N+       D+W  G  + E+   G  
Sbjct: 184 M----------------------APESI-----NFRRFTSASDVWMFGVCMWEILMHGVK 216

Query: 317 LFQTHENLEHLAMMER 332
            FQ  +N + +  +E 
Sbjct: 217 PFQGVKNNDVIGRIEN 232

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 26/170 (15%)

Query: 95  RILSKMGEGTFGQVVE---CFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHD 149
            +   +GEG FG+V E        +K  VA+K  +       +E  M E  +++ L  H 
Sbjct: 15  VLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNL-DHP 73

Query: 150 IGGTRCVQIRNWFDY----RNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
                 V++               I+ E    G  L  +L +N      + LV     Q+
Sbjct: 74  ----HIVKL-----IGIIEEEPTWIIMELYPYG-ELGHYLERNKNSLKVLTLV-LYSLQI 122

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFK 252
            +++A++  +  +H D+   NIL+ S E VK+ D  F LSR  +D  Y+K
Sbjct: 123 CKAMAYLESINCVHRDIAVRNILVASPECVKLGD--FGLSRYIEDEDYYK 170

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 21/163 (12%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR 154
           +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L +H     R
Sbjct: 16  KLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQL-QHQ----R 69

Query: 155 CVQIRNWFDY----RNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
            V++     Y    +  I I+ E  + G SL DFL+  S     I+ + ++  Q+ E +A
Sbjct: 70  LVRL-----YAVVTQEPIYIITEYMENG-SLVDFLKTPSGIKLTINKLLDMAAQIAEGMA 123

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSY 250
           F+ E   IH DL+  NIL+      K+ D  F L+R  +D  Y
Sbjct: 124 FIEERNYIHRDLRAANILVSDTLSCKIAD--FGLARLIEDNEY 164

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD----- 149
             + ++G G FG V   +   K + VAIK +R      E  + E +V+ +L  H      
Sbjct: 11  TFVQEIGSGQFGLVHLGYWLNKDK-VAIKTIREGAMSEEDFIEEAEVMMKL-SHPKLVQL 68

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            G   C++       +  IC+V E  + G  L D+LR          L+  +   + E +
Sbjct: 69  YG--VCLE-------QAPICLVTEFMEHG-CLSDYLRTQRGLFAAETLL-GMCLDVCEGM 117

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSY 250
           A++ E  +IH DL   N L+   + +KV D  F ++R   D  Y
Sbjct: 118 AYLEEACVIHRDLAARNCLVGENQVIKVSD--FGMTRFVLDDQY 159

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 56/256 (21%), Positives = 98/256 (38%), Gaps = 66/256 (25%)

Query: 99  KMGEGTFGQVVE-CFDNEKKEL-VAIKIVR--SINKYREAAMIEIDVLQRLARHDIGGTR 154
           ++G G FG V +  +   KK++ VAIK+++  +     E  M E  ++ +L  +      
Sbjct: 17  ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL-DNP----Y 71

Query: 155 CVQIRNWFDY----RNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
            V++             + +V E    G  L+ FL          ++  EL  Q+   + 
Sbjct: 72  IVRL-----IGVCQAEALMLVMEMAGGG-PLHKFLVGKREEIPVSNVA-ELLHQVSMGMK 124

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++ E   +H DL   N+LLV+  Y K+                            DFG +
Sbjct: 125 YLEEKNFVHRDLAARNVLLVNRHYAKIS---------------------------DFGLS 157

Query: 269 TFEHQDHSYVVSTRHYR------APEVILGLGWNY-----PCDLWSVGCILVELCS-GEA 316
                D SY  +    +      APE I     N+       D+WS G  + E  S G+ 
Sbjct: 158 KALGADDSYYTARSAGKWPLKWYAPECI-----NFRKFSSRSDVWSYGVTMWEALSYGQK 212

Query: 317 LFQTHENLEHLAMMER 332
            ++  +  E +A +E+
Sbjct: 213 PYKKMKGPEVMAFIEQ 228

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 56/252 (22%), Positives = 98/252 (38%), Gaps = 56/252 (22%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD----- 149
            +L ++G G FG V       + + VA+K+++  +   +    E   + +L  H      
Sbjct: 11  TLLKELGSGQFGVVKLGKWKGQYD-VAVKMIKEGSMSEDEFFQEAQTMMKL-SHPKLVKF 68

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            G   C +          I IV E    G  L ++LR +     P  L+ E+   + E +
Sbjct: 69  YG--VCSK-------EYPIYIVTEYISNG-CLLNYLRSHGKGLEPSQLL-EMCYDVCEGM 117

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIKLIDFG 266
           AF+   + IH DL   N L+     VKV D  F ++R   D  Y  ++     +K     
Sbjct: 118 AFLESHQFIHRDLAARNCLVDRDLCVKVSD--FGMTRYVLDDQYVSSVGTKFPVK----- 170

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNY-----PCDLWSVGCILVELCS-GEALFQT 320
                            + APEV      +Y       D+W+ G ++ E+ S G+  +  
Sbjct: 171 -----------------WSAPEVF-----HYFKYSSKSDVWAFGILMWEVFSLGKMPYDL 208

Query: 321 HENLEHLAMMER 332
           + N E +  + +
Sbjct: 209 YTNSEVVLKVSQ 220

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 35/170 (20%), Positives = 76/170 (44%), Gaps = 29/170 (17%)

Query: 95  RILSKMGEGTFGQVVECF---DNEKKEL-VAIKIVR--SINKYREAAMIEIDVLQRLARH 148
           + +  +G G FG V +     + EK ++ VAIK +R  +  K  +  + E  V+  +  +
Sbjct: 18  KKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV-DN 76

Query: 149 D-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGR 201
                 +G   C+         + + ++ +    G  L D++R++        L+     
Sbjct: 77  PHVCRLLG--ICLT--------STVQLITQLMPFG-CLLDYVREHKDNIGSQYLL-NWCV 124

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSY 250
           Q+ + + ++ + RL+H DL   N+L+ + ++VK+ D  F L++       
Sbjct: 125 QIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD--FGLAKLLGAEEK 172

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 28/163 (17%)

Query: 95  RILSKMGEGTFGQVVE---CFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLAR 147
           R+L K+G+G+FG V        + K   VA+K ++    S  +  +  + E++ +  L  
Sbjct: 21  RLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL-D 79

Query: 148 HDIGGTRCVQIRNWFDY----RNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGR 201
           H       +++     Y       + +V E   LG SL D LRK+        L      
Sbjct: 80  HR----NLIRL-----YGVVLTPPMKMVTELAPLG-SLLDRLRKHQGHFLLGTLS-RYAV 128

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSR 243
           Q+ E + ++   R IH DL   N+LL + + VK+ D  F L R
Sbjct: 129 QVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGD--FGLMR 169

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 58/261 (22%), Positives = 96/261 (36%), Gaps = 61/261 (23%)

Query: 95  RILSKMGEGTFGQVVE-------CFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLA 146
                +G+GTF ++ +        +    +  V +K++   +  Y E+      ++ +L 
Sbjct: 11  IFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKL- 69

Query: 147 RHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVREL 199
            H       G   CV         +   +V E  K G SL  +L+KN      +  + E+
Sbjct: 70  SHKHLVLNYG--VCVC-------GDENILVQEFVKFG-SLDTYLKKNKNCINILWKL-EV 118

Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +QL  ++ F+ E  LIH ++  +NILL+  E  K  +  F                   
Sbjct: 119 AKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPF------------------- 159

Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYR------APEVIL-GLGWNYPCDLWSVGCILVELC 312
           IKL D G +         V+     +       PE I      N   D WS G  L E+C
Sbjct: 160 IKLSDPGIS-------ITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEIC 212

Query: 313 S-GEALFQTHENLEHLAMMER 332
           S G+      ++   L   E 
Sbjct: 213 SGGDKPLSALDSQRKLQFYED 233

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 23/164 (14%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD----- 149
             L ++G G FG V       + + VAIK+++  +   +  + E  V+  L  H+     
Sbjct: 27  TFLKELGTGQFGVVKYGKWRGQYD-VAIKMIKEGSMSEDEFIEEAKVMMNL-SHEKLVQL 84

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            G   C +       +  I I+ E    G  L ++LR+  +R     L+ E+ + + E++
Sbjct: 85  YG--VCTK-------QRPIFIITEYMANG-CLLNYLREMRHRFQTQQLL-EMCKDVCEAM 133

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSY 250
            ++   + +H DL   N L+     VKV D  F LSR   D  Y
Sbjct: 134 EYLESKQFLHRDLAARNCLVNDQGVVKVSD--FGLSRYVLDDEY 175

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 47/256 (18%), Positives = 81/256 (31%), Gaps = 30/256 (11%)

Query: 14  MDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIPRTGSPPW 73
           M        R    V   +  P+  P L  +          Y  +           +   
Sbjct: 7   MGHHHHHHGRRRASVAAGILVPRGSPGLDGICSIEELSTSLYKKAGSENLYFQGANTVHI 66

Query: 74  RPDDKDGHYVFAIGENLTPRYR----ILSKMGEGTFGQVVECF---DNEKKELVAIKIVR 126
                +   V A+   +             +G G FG V       ++ KK   A+K + 
Sbjct: 67  DLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLN 126

Query: 127 SINKYREAA--MIEIDVLQRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGP 177
            I    E +  + E  +++    H      +G                  +V    K G 
Sbjct: 127 RITDIGEVSQFLTEGIIMKDF-SHPNVLSLLG---IC-----LRSEGSPLVVLPYMKHG- 176

Query: 178 SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD 237
            L +F+R  ++     DL+   G Q+ + + F+   + +H DL   N +L     VKV D
Sbjct: 177 DLRNFIRNETHNPTVKDLIG-FGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVAD 235

Query: 238 YKF-LSRSSKDGSYFK 252
             F L+R   D  +  
Sbjct: 236 --FGLARDMYDKEFDS 249

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 23/169 (13%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD----- 149
           ++L  +G+G FG V+       K  VA+K +++ +   +A + E  V+ +L RH      
Sbjct: 196 KLLQTIGKGEFGDVMLGDYRGNK--VAVKCIKN-DATAQAFLAEASVMTQL-RHSNLVQL 251

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           +G    V+       +  + IV E    G SL D+LR         D + +    + E++
Sbjct: 252 LG--VIVE------EKGGLYIVTEYMAKG-SLVDYLRSRGRSVLGGDCLLKFSLDVCEAM 302

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLP 255
            ++     +H DL   N+L+      KV D  F L++ +        LP
Sbjct: 303 EYLEGNNFVHRDLAARNVLVSEDNVAKVSD--FGLTKEASSTQDTGKLP 349

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 65/343 (18%), Positives = 116/343 (33%), Gaps = 62/343 (18%)

Query: 7   IEFPHKNMDKRPRKRPRLTWDVPPPLPPPKVLPALYCVQEFGNGGMPNYACSSMFYGAIP 66
               + +    P      +    P      +    Y  +              M      
Sbjct: 257 SSASNASGAAAPTLPAHPSTLTHPQRRIDTLNSDGYTPEPARITSPDKPRPMPMDTSVFE 316

Query: 67  RTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVE-CFDNEKKEL-VAIKI 124
              S P    DK    +F   +NL        ++G G FG V +  +   KK++ VAIK+
Sbjct: 317 SPFSDPEELKDKK---LFLKRDNLL---IADIELGCGNFGSVRQGVYRMRKKQIDVAIKV 370

Query: 125 VR--SINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY----RNHICIVFE--KLG 176
           ++  +     E  M E  ++ +L  +       V++             + +V E    G
Sbjct: 371 LKQGTEKADTEEMMREAQIMHQL-DNP----YIVRL-----IGVCQAEALMLVMEMAGGG 420

Query: 177 PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP 236
             L+ FL          ++  EL  Q+   + ++ E   +H +L   N+LLV+  Y K+ 
Sbjct: 421 -PLHKFLVGKREEIPVSNVA-ELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKIS 478

Query: 237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYR------APEVI 290
                                      DFG +     D SY  +    +      APE I
Sbjct: 479 ---------------------------DFGLSKALGADDSYYTARSAGKWPLKWYAPECI 511

Query: 291 LGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
               ++   D+WS G  + E  S G+  ++  +  E +A +E+
Sbjct: 512 NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQ 554

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 71/268 (26%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVE-CFDNEKKEL-VAIKIVR---SINKYREAAMIEIDVL 142
           + LT   + L   G G FG V +  +  +K    VA+KI++   +    ++  + E +V+
Sbjct: 16  KLLTLEDKEL---GSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM 72

Query: 143 QRLARHDIGGTRCVQIRNWFDY----RNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLV 196
           Q+L  +       V++               +V E  +LG  L  +L++N  R      +
Sbjct: 73  QQL-DNP----YIVRM-----IGICEAESWMLVMEMAELG-PLNKYLQQN--RHVKDKNI 119

Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
            EL  Q+   + ++ E   +H DL   N+LLV+  Y K+                     
Sbjct: 120 IELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKIS-------------------- 159

Query: 257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYR------APEVILGLGWNY-----PCDLWSVG 305
                  DFG +     D +Y  +  H +      APE I     NY       D+WS G
Sbjct: 160 -------DFGLSKALRADENYYKAQTHGKWPVKWYAPECI-----NYYKFSSKSDVWSFG 207

Query: 306 CILVELCS-GEALFQTHENLEHLAMMER 332
            ++ E  S G+  ++  +  E  AM+E+
Sbjct: 208 VLMWEAFSYGQKPYRGMKGSEVTAMLEK 235

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 54/263 (20%), Positives = 93/263 (35%), Gaps = 70/263 (26%)

Query: 95  RILSKMGEGTFGQVVE---CFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHD 149
            I   +G G  G+V         ++   VAIK ++     + R   + E  ++ +   H 
Sbjct: 52  HIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQF-DHP 110

Query: 150 -----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                 G     +            IV E  + G SL  FLR +  +   + LV  + R 
Sbjct: 111 NIIRLEG--VVTR-------GRLAMIVTEYMENG-SLDTFLRTHDGQFTIMQLV-GMLRG 159

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIK 261
           +   + ++ +L  +H DL   N+L+ S    KV D  F LSR  +D              
Sbjct: 160 VGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSD--FGLSRVLEDDPD----------- 206

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYR------APEVILGLGWNY-----PCDLWSVGCILVE 310
                             +T   +      APE I      +       D+WS G ++ E
Sbjct: 207 ---------------AAYTTTGGKIPIRWTAPEAI-----AFRTFSSASDVWSFGVVMWE 246

Query: 311 LCS-GEALFQTHENLEHLAMMER 332
           + + GE  +    N + ++ +E 
Sbjct: 247 VLAYGERPYWNMTNRDVISSVEE 269

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 26/178 (14%)

Query: 95  RILSKMGEGTFGQVVECF---DNEKKELVAIKIVRSINKYREAA--MIEIDVLQRLARHD 149
                +G G FG V       ++ KK   A+K +  I    E +  + E  +++    H 
Sbjct: 28  HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDF-SHP 86

Query: 150 -----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                +G                  +V    K G  L +F+R  ++     DL+   G Q
Sbjct: 87  NVLSLLG---IC-----LRSEGSPLVVLPYMKHG-DLRNFIRNETHNPTVKDLIG-FGLQ 136

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSA 259
           + + + ++   + +H DL   N +L     VKV D  F L+R   D  Y+    K+ A
Sbjct: 137 VAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVAD--FGLARDMYDKEYYSVHNKTGA 192

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 60/263 (22%), Positives = 97/263 (36%), Gaps = 70/263 (26%)

Query: 95  RILSKMGEGTFGQVVE---CFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHD 149
            I   +G G FG+V        ++K+  VAIK ++     K R   + E  ++ +   H 
Sbjct: 48  SIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQF-DHP 106

Query: 150 -----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                 G     +          + IV E  + G SL  FLRK+  +   I LV  + R 
Sbjct: 107 NIIRLEG--VVTK-------SKPVMIVTEYMENG-SLDSFLRKHDAQFTVIQLV-GMLRG 155

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSAIK 261
           +   + ++ ++  +H DL   NIL+ S    KV D  F L R  +D              
Sbjct: 156 IASGMKYLSDMGYVHRDLAARNILINSNLVCKVSD--FGLGRVLEDDPE----------- 202

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYR------APEVILGLGWNY-----PCDLWSVGCILVE 310
                             +TR  +      +PE I      Y       D+WS G +L E
Sbjct: 203 ---------------AAYTTRGGKIPIRWTSPEAI-----AYRKFTSASDVWSYGIVLWE 242

Query: 311 LCS-GEALFQTHENLEHLAMMER 332
           + S GE  +    N + +  ++ 
Sbjct: 243 VMSYGERPYWEMSNQDVIKAVDE 265

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 41/190 (21%)

Query: 92  PRYRI--LSKMGEGTFGQVVEC-----FDNEKKELVAIKIVR--SINKYREAAMIEIDVL 142
           PR  +     +G G FG+VVE         +    VA+K+++  +    +EA M E+ ++
Sbjct: 44  PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIM 103

Query: 143 QRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDL 195
             L +H+     +G   C            + ++ E    G  L +FLR+ S        
Sbjct: 104 SHLGQHENIVNLLGA--CTH-------GGPVLVITEYCCYG-DLLNFLRRKSRVLETDPA 153

Query: 196 VRELGRQLLES------------VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LS 242
                                  +AF+     IH D+   N+LL +    K+ D  F L+
Sbjct: 154 FAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGD--FGLA 211

Query: 243 RSSKDGSYFK 252
           R   + S + 
Sbjct: 212 RDIMNDSNYI 221

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 35/170 (20%), Positives = 76/170 (44%), Gaps = 29/170 (17%)

Query: 95  RILSKMGEGTFGQVVECF---DNEKKEL-VAIKIVR--SINKYREAAMIEIDVLQRLARH 148
           + +  +G G FG V +     + EK ++ VAIK +R  +  K  +  + E  V+  +  +
Sbjct: 18  KKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV-DN 76

Query: 149 D-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGR 201
                 +G   C+         + + ++ +    G  L D++R++        L+     
Sbjct: 77  PHVCRLLG--ICLT--------STVQLITQLMPFG-CLLDYVREHKDNIGSQYLL-NWCV 124

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSY 250
           Q+ + + ++ + RL+H DL   N+L+ + ++VK+ D  F L++       
Sbjct: 125 QIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD--FGLAKLLGAEEK 172

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 23/169 (13%)

Query: 95  RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD----- 149
           ++L  +G+G FG V+       K  VA+K +++ +   +A + E  V+ +L RH      
Sbjct: 24  KLLQTIGKGEFGDVMLGDYRGNK--VAVKCIKN-DATAQAFLAEASVMTQL-RHSNLVQL 79

Query: 150 IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           +G    +      + +  + IV E    G SL D+LR         D + +    + E++
Sbjct: 80  LG---VI-----VEEKGGLYIVTEYMAKG-SLVDYLRSRGRSVLGGDCLLKFSLDVCEAM 130

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLP 255
            ++     +H DL   N+L+      KV D  F L++ +        LP
Sbjct: 131 EYLEGNNFVHRDLAARNVLVSEDNVAKVSD--FGLTKEASSTQDTGKLP 177

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 29/170 (17%)

Query: 95  RILSKMGEGTFGQVVECF---DNEKKEL-VAIKIVR--SINKYREAAMIEIDVLQRLARH 148
           R L  +G G FG V +     + E  ++ V IK++   S  +  +A    +  +  L  H
Sbjct: 16  RKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSL-DH 74

Query: 149 D-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGR 201
                 +G   C          + + +V +   LG SL D +R++     P  L+   G 
Sbjct: 75  AHIVRLLG--LCPG--------SSLQLVTQYLPLG-SLLDHVRQHRGALGPQLLL-NWGV 122

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSY 250
           Q+ + + ++ E  ++H +L   N+LL S   V+V D  F ++        
Sbjct: 123 QIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVAD--FGVADLLPPDDK 170

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 47/194 (24%), Positives = 71/194 (36%), Gaps = 45/194 (23%)

Query: 92  PRYRI--LSKMGEGTFGQVVEC-----FDNEKKELVAIKIVR--SINKYREAAMIEIDVL 142
           PR R+     +G G FG+VVE        ++    VA+K+++  +    REA M E+ VL
Sbjct: 21  PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL 80

Query: 143 QRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDL 195
             L  H      +G   C              ++ E    G  L +FLR+          
Sbjct: 81  SYLGNHMNIVNLLG--ACTI-------GGPTLVITEYCCYG-DLLNFLRRKRDSFICSKT 130

Query: 196 VRELGRQLLESV----------------AFMHELRLIHTDLKPENILLVSAEYVKVPDYK 239
              +      ++                AF+     IH DL   NILL      K+ D  
Sbjct: 131 SPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICD-- 188

Query: 240 F-LSRSSKDGSYFK 252
           F L+R  K+ S + 
Sbjct: 189 FGLARDIKNDSNYV 202

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 28/170 (16%)

Query: 95  RILSKMGEGTFGQVVE----CFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARH 148
                +G G FG+V +        +K+  VAIK ++     K R   + E  ++ +   H
Sbjct: 47  TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF-SH 105

Query: 149 D-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGR 201
                  G     +          + I+ E  + G +L  FLR+       + LV  + R
Sbjct: 106 HNIIRLEG--VISK-------YKPMMIITEYMENG-ALDKFLREKDGEFSVLQLV-GMLR 154

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSY 250
            +   + ++  +  +H DL   NIL+ S    KV D  F LSR  +D   
Sbjct: 155 GIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSD--FGLSRVLEDDPE 202

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 45/182 (24%), Positives = 69/182 (37%), Gaps = 40/182 (21%)

Query: 92  PRYRI--LSKMGEGTFGQVVECF--DNEKKELVAIKIVRSINKYREAA--MIEIDVLQRL 145
               I     +GEG FGQV++     +  +   AIK ++      +      E++VL +L
Sbjct: 23  DWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKL 82

Query: 146 ARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRE 198
             H      +G   C         R ++ +  E    G +L DFLRK+            
Sbjct: 83  GHHPNIINLLG--ACEH-------RGYLYLAIEYAPHG-NLLDFLRKSRVLETDPAFAIA 132

Query: 199 LG-------RQLLE---SVA----FMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSR 243
                    +QLL     VA    ++ + + IH DL   NIL+      K+ D  F LSR
Sbjct: 133 NSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIAD--FGLSR 190

Query: 244 SS 245
             
Sbjct: 191 GQ 192

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 42/192 (21%)

Query: 92  PRYRI--LSKMGEGTFGQVVECF-----DNEKKELVAIKIVRSINKYREAA--MIEIDVL 142
           PR R+     +G G FGQV+E              VA+K+++    + E    M E+ +L
Sbjct: 25  PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL 84

Query: 143 QRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDL 195
             +  H      +G                + ++ E  K G +L  +LR       P  +
Sbjct: 85  IHIGHHLNVVNLLG---AC-----TKPGGPLMVIVEFCKFG-NLSTYLRSKRNEFVPYKV 135

Query: 196 VRELGRQLLESV--------------AFMHELRLIHTDLKPENILLVSAEYVKVPDYKF- 240
             E   +   ++               F+   + IH DL   NILL     VK+ D  F 
Sbjct: 136 APEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICD--FG 193

Query: 241 LSRSSKDGSYFK 252
           L+R       + 
Sbjct: 194 LARDIYKDPDYV 205

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 67/510 (13%), Positives = 135/510 (26%), Gaps = 160/510 (31%)

Query: 10  PHKNMDKRPRKRPRLTWDVPPPLPP------PKVLP---ALYCVQE------FGNGG--- 51
           P         +R RL ++                L    AL  ++        G  G   
Sbjct: 105 PSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 52  --MPNYACSS-----MFYGAIPRTGSPPW-------RPDDKDGHYVFAIGENL----TPR 93
             +    C S          I       W        P+      V  + + L     P 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIF------WLNLKNCNSPET-----VLEMLQKLLYQIDPN 212

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
           +   S          +     E + L+  K       Y    ++ ++V            
Sbjct: 213 WTSRSDHSSNIK-LRIHSIQAELRRLLKSK------PYENCLLVLLNV------------ 253

Query: 154 RCVQIRNWFDYRNHIC-IVFEKLGPSLYDFLRKNSYRSFPID-----LVRELGRQLLESV 207
           +  +  N F+     C I+       + DFL   +     +D     L  +  + LL   
Sbjct: 254 QNAKAWNAFNLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 208 AFMHELRLIHTDLKPE----NILLVS--AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
                L     DL  E    N   +S  AE ++      L+        +K++       
Sbjct: 311 -----LDCRPQDLPREVLTTNPRRLSIIAESIR----DGLATWD----NWKHVNCDKLTT 357

Query: 262 LIDFGSTTFEHQDHSYVVSTRHYRA----------PEVILGLGWNYPCDLWSVGCILVEL 311
           +I+   ++    + +     + +            P ++L L W        V  ++ +L
Sbjct: 358 IIE---SSLNVLEPAEY--RKMFDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKL 411

Query: 312 CSGEAL---------------FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRG 356
                +                +    LE+   +        H  ++      + +    
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--------HRSIVDHYNIPKTFDSDD 463

Query: 357 ARLDWPDG-----------ATSRDSMRAVWKLLRLPNL--IMQHVDHS------AGDLID 397
               + D                     +++++ L +   + Q + H       +G +++
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILN 522

Query: 398 LLQGLLRYDPAERLKAREALRHPFFTRDVR 427
            LQ L  Y      K       P + R V 
Sbjct: 523 TLQQLKFY------KPYICDNDPKYERLVN 546

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 27/181 (14%)

Query: 92  PRYRI--LSKMGEGTFGQVVECF---DNEKKELVAIKIVR---SINKYREAAMIEIDVLQ 143
           P  +      +G+G FG V E     ++     VA+K+++     +   E  + E   ++
Sbjct: 21  PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMK 80

Query: 144 RLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDL- 195
               H      +G                  ++    K G  L+ FL  +     P +L 
Sbjct: 81  EF-DHPHVAKLVG---VSLRSRAKGRLPIPMVILPFMKHG-DLHAFLLASRIGENPFNLP 135

Query: 196 VREL---GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYF 251
           ++ L      +   + ++     IH DL   N +L     V V D  F LSR    G Y+
Sbjct: 136 LQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVAD--FGLSRKIYSGDYY 193

Query: 252 K 252
           +
Sbjct: 194 R 194

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 36/185 (19%)

Query: 92  PRYRI--LSKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSINKYREAA--MIEIDVL 142
            R +I    ++G+G+FG V E        +E +  VAIK V      RE    + E  V+
Sbjct: 23  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 82

Query: 143 QRLARHDIGGTR----CVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLV 196
           +    H +   R      Q            ++ E    G  L  +LR          ++
Sbjct: 83  KEFNCHHV--VRLLGVVSQ-------GQPTLVIMELMTRG-DLKSYLRSLRPAMANNPVL 132

Query: 197 RELGRQLLESVA--------FMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKD 247
                  +  +A        +++  + +H DL   N ++     VK+ D  F ++R   +
Sbjct: 133 APPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGD--FGMTRDIYE 190

Query: 248 GSYFK 252
             Y++
Sbjct: 191 TDYYR 195

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 26/178 (14%)

Query: 95  RILSKMGEGTFGQVVECF---DNEKKELVAIKIVRSINKYREAA--MIEIDVLQRLARHD 149
                +G+G FG V         + +   AIK +  I + ++    + E  +++ L  H 
Sbjct: 24  HSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGL-NHP 82

Query: 150 -----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
                IG    +             ++      G  L  F+R         DL+   G Q
Sbjct: 83  NVLALIG---IM-----LPPEGLPHVLLPYMCHG-DLLQFIRSPQRNPTVKDLI-SFGLQ 132

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYFKNLPKSSA 259
           +   + ++ E + +H DL   N +L  +  VKV D  F L+R   D  Y+       A
Sbjct: 133 VARGMEYLAEQKFVHRDLAARNCMLDESFTVKVAD--FGLARDILDREYYSVQQHRHA 188

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 38/194 (19%), Positives = 75/194 (38%), Gaps = 45/194 (23%)

Query: 92  PRYRI--LSKMGEGTFGQVVEC-------FDNEKKELVAIKIVRSINKYREAA--MIEID 140
           PR R+     +GEG FGQVV             +   VA+K+++S    ++ +  + E++
Sbjct: 67  PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEME 126

Query: 141 VLQRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPI 193
           +++ + +H      +G   C Q          + ++ E    G +L ++L+         
Sbjct: 127 MMKMIGKHKNIINLLG--ACTQ-------DGPLYVIVEYASKG-NLREYLQARRPPGLEY 176

Query: 194 DLVRELG-------RQLLESV-------AFMHELRLIHTDLKPENILLVSAEYVKVPDYK 239
                         + L+           ++   + IH DL   N+L+     +K+ D  
Sbjct: 177 SYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIAD-- 234

Query: 240 F-LSRSSKDGSYFK 252
           F L+R      Y+K
Sbjct: 235 FGLARDIHHIDYYK 248

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 52/200 (26%)

Query: 92  PRYRI--LSKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSINKYREAA--MIEIDVL 142
           PR  +     +G G FG+V+               VA+K+++      E    M E+ ++
Sbjct: 43  PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMM 102

Query: 143 QRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDL 195
            +L  H+     +G   C            I ++FE    G  L ++LR    +    ++
Sbjct: 103 TQLGSHENIVNLLGA--CTL-------SGPIYLIFEYCCYG-DLLNYLRSKREKFSEDEI 152

Query: 196 VRELGRQLLESV---------------------AFMHELRLIHTDLKPENILLVSAEYV- 233
             E  ++L E                        F+     +H DL   N+ LV+   V 
Sbjct: 153 EYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNV-LVTHGKVV 211

Query: 234 KVPDYKF-LSRSSKDGSYFK 252
           K+ D  F L+R     S + 
Sbjct: 212 KICD--FGLARDIMSDSNYV 229

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 28/181 (15%)

Query: 92  PRYRI--LSKMGEGTFGQVVECF---DNEKKELVAIKIVRSIN---KYREAAMIEIDVLQ 143
            R  +     +GEG FG V+E     ++     VA+K ++  N   +  E  + E   ++
Sbjct: 32  DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMK 91

Query: 144 RLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDL- 195
               H      +G    V I           ++    K G  L+ +L  +   + P  + 
Sbjct: 92  DF-SHPNVIRLLG----VCIEMSSQGIPKPMVILPFMKYG-DLHTYLLYSRLETGPKHIP 145

Query: 196 VREL---GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-LSRSSKDGSYF 251
           ++ L      +   + ++     +H DL   N +L     V V D  F LS+    G Y+
Sbjct: 146 LQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVAD--FGLSKKIYSGDYY 203

Query: 252 K 252
           +
Sbjct: 204 R 204

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 42/190 (22%)

Query: 92  PRYRI--LSKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQ 143
            R  I    ++GEG FG+V           + K LVA+K ++  +   R+    E ++L 
Sbjct: 39  KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLT 98

Query: 144 RLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLV 196
            L +H       G   C +          + +VFE  + G  L  FLR +   +  +   
Sbjct: 99  ML-QHQHIVRFFG--VCTE-------GRPLLMVFEYMRHG-DLNRFLRSHGPDAKLLAGG 147

Query: 197 RELGRQLLESVAFMH-------------ELRLIHTDLKPENILLVSAEYVKVPDYKF-LS 242
            ++    L     +               L  +H DL   N L+     VK+ D  F +S
Sbjct: 148 EDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGD--FGMS 205

Query: 243 RSSKDGSYFK 252
           R      Y++
Sbjct: 206 RDIYSTDYYR 215

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 40/194 (20%), Positives = 81/194 (41%), Gaps = 45/194 (23%)

Query: 92  PRYRI--LSKMGEGTFGQVVEC-------FDNEKKELVAIKIVRSINKYREAA--MIEID 140
           PR ++     +GEG FGQVV            ++   VA+K+++     ++ +  + E++
Sbjct: 79  PRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEME 138

Query: 141 VLQRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNS--YRSF 191
           +++ + +H      +G   C Q          + ++ E    G +L ++LR        +
Sbjct: 139 MMKMIGKHKNIINLLG--ACTQ-------DGPLYVIVEYASKG-NLREYLRARRPPGMEY 188

Query: 192 PIDLVRELGRQLLES--------VA----FMHELRLIHTDLKPENILLVSAEYVKVPDYK 239
             D+ R    Q+           +A    ++   + IH DL   N+L+     +K+ D  
Sbjct: 189 SYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIAD-- 246

Query: 240 F-LSRSSKDGSYFK 252
           F L+R   +  Y+K
Sbjct: 247 FGLARDINNIDYYK 260

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 37/194 (19%), Positives = 76/194 (39%), Gaps = 45/194 (23%)

Query: 92  PRYRI--LSKMGEGTFGQVVEC-------FDNEKKELVAIKIVRSINKYREAA--MIEID 140
           PR ++     +GEG FGQVV            ++   VA+K+++     ++ +  + E++
Sbjct: 33  PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEME 92

Query: 141 VLQRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPI 193
           +++ + +H      +G   C Q          + ++ E    G +L ++LR         
Sbjct: 93  MMKMIGKHKNIINLLG--ACTQ-------DGPLYVIVEYASKG-NLREYLRARRPPGMEY 142

Query: 194 DLVRELG-------RQLLESV-------AFMHELRLIHTDLKPENILLVSAEYVKVPDYK 239
                         + L+           ++   + IH DL   N+L+     +K+ D  
Sbjct: 143 SYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIAD-- 200

Query: 240 F-LSRSSKDGSYFK 252
           F L+R   +  Y+K
Sbjct: 201 FGLARDINNIDYYK 214

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 44/192 (22%)

Query: 92  PRYRI--LSKMGEGTFGQVVEC-----FDNEKKELVAIKIVR--SINKYREAAMIEIDVL 142
               +  + ++GE  FG+V +         E+ + VAIK ++  +    RE    E  + 
Sbjct: 7   SLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLR 66

Query: 143 QRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDL 195
            RL +H      +G     +          + ++F     G  L++FL   S  S     
Sbjct: 67  ARL-QHPNVVCLLG--VVTK-------DQPLSMIFSYCSHG-DLHEFLVMRSPHSDVGST 115

Query: 196 VRELG-------RQLLESV-------AFMHELRLIHTDLKPENILLVSAEYVKVPDYKF- 240
             +            +  V        ++    ++H DL   N+L+     VK+ D    
Sbjct: 116 DDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISD--LG 173

Query: 241 LSRSSKDGSYFK 252
           L R      Y+K
Sbjct: 174 LFREVYAADYYK 185

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 43/191 (22%)

Query: 92  PRYRI--LSKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSINKYREAA-MIEIDVLQ 143
            R  I    ++GEG FG+V           + K LVA+K ++            E ++L 
Sbjct: 13  KRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLT 72

Query: 144 RLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDLV 196
            L +H+      G   C          + + +VFE  K G  L  FLR +   +  +   
Sbjct: 73  NL-QHEHIVKFYG--VCGD-------GDPLIMVFEYMKHG-DLNKFLRAHGPDAMILVDG 121

Query: 197 RELGR-------QLLESV-------AFMHELRLIHTDLKPENILLVSAEYVKVPDYKF-L 241
           +           Q+L           ++     +H DL   N L+ +   VK+ D  F +
Sbjct: 122 QPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGD--FGM 179

Query: 242 SRSSKDGSYFK 252
           SR      Y++
Sbjct: 180 SRDVYSTDYYR 190

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 61/227 (26%)

Query: 66  PRTGSPPWRPDDKDGHYVFAIGENLTPRYRI--LSKMGEGTFGQVVEC-----FDNEKKE 118
           P     P   + K     +       PR  I  +  +GEG FG+V +         E   
Sbjct: 26  PMYQRMPLLLNPKLLSLEY-------PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFT 78

Query: 119 LVAIKIVRSI--NKYREAAMIEIDVLQRLARHD-----IGGTRCVQIRNWFDYRNHICIV 171
           +VA+K+++       +     E  ++     +      +G   C            +C++
Sbjct: 79  MVAVKMLKEEASADMQADFQREAALMAEF-DNPNIVKLLG--VCAV-------GKPMCLL 128

Query: 172 FE--KLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV---------------------- 207
           FE    G  L +FLR  S  +       +L  +   S                       
Sbjct: 129 FEYMAYG-DLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGM 187

Query: 208 AFMHELRLIHTDLKPENILLVSAEY-VKVPDYKF-LSRSSKDGSYFK 252
           A++ E + +H DL   N  LV     VK+ D  F LSR+     Y+K
Sbjct: 188 AYLSERKFVHRDLATRNC-LVGENMVVKIAD--FGLSRNIYSADYYK 231

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A* Length = 258

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 9/130 (6%)

Query: 99  KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQI 158
           ++    F ++ E    +++    ++ +    K       E   L+R       G    Q 
Sbjct: 83  RIETSEFDKMDEYLYGDER--FDMRRISPKEKVFIWTEKEFRNLERAKEA---GVSVPQP 137

Query: 159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH-ELRLIH 217
              + Y  ++ ++       L         R      V  +   ++E+V  ++ E  L+H
Sbjct: 138 ---YTYMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVH 194

Query: 218 TDLKPENILL 227
            DL   NI+ 
Sbjct: 195 ADLSEYNIMY 204

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 52/200 (26%)

Query: 92  PRYRI--LSKMGEGTFGQVVECF-----DNEKKELVAIKIVRSINKYREAA--MIEIDVL 142
           PR  +     +GEG FG+VV+              VA+K+++      E    + E +VL
Sbjct: 21  PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVL 80

Query: 143 QRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSFPIDL 195
           +++  H       G   C Q          + ++ E  K G SL  FLR++         
Sbjct: 81  KQV-NHPHVIKLYGA--CSQ-------DGPLLLIVEYAKYG-SLRGFLRESRKVGPGYLG 129

Query: 196 VRELGRQLLESV----------------------AFMHELRLIHTDLKPENILLVSAEYV 233
                                              ++ E++L+H DL   NIL+     +
Sbjct: 130 SGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKM 189

Query: 234 KVPDYKF-LSRSSKDGSYFK 252
           K+ D  F LSR   +   + 
Sbjct: 190 KISD--FGLSRDVYEEDSYV 207

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 40/187 (21%)

Query: 92  PRYRI--LSKMGEGTFGQVVECF-----DNEKKELVAIKIVRSINKYREAA--MIEIDVL 142
           PR  I  +  +G G FG+V E       ++     VA+K +  +   ++    ++E  ++
Sbjct: 28  PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 87

Query: 143 QRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSF---- 191
            +   H      IG    +Q            I+ E    G  L  FLR+   R      
Sbjct: 88  SKF-NHQNIVRCIG--VSLQ-------SLPRFILMELMAGG-DLKSFLRETRPRPSQPSS 136

Query: 192 --PIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEY---VKVPDYKF-LSRSS 245
              +DL+  + R +     ++ E   IH D+   N LL         K+ D  F ++R  
Sbjct: 137 LAMLDLLH-VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGD--FGMARDI 193

Query: 246 KDGSYFK 252
              SY++
Sbjct: 194 YRASYYR 200

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 40/187 (21%)

Query: 92  PRYRI--LSKMGEGTFGQVVECF-----DNEKKELVAIKIVRSINKYREAA--MIEIDVL 142
           PR  I  +  +G G FG+V E       ++     VA+K +  +   ++    ++E  ++
Sbjct: 69  PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 128

Query: 143 QRLARHD-----IGGTRCVQIRNWFDYRNHICIVFE--KLGPSLYDFLRKNSYRSF---- 191
            +   H      IG    +Q            I+ E    G  L  FLR+   R      
Sbjct: 129 SKF-NHQNIVRCIG--VSLQ-------SLPRFILLELMAGG-DLKSFLRETRPRPSQPSS 177

Query: 192 --PIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEY---VKVPDYKF-LSRSS 245
              +DL+  + R +     ++ E   IH D+   N LL         K+ D  F ++R  
Sbjct: 178 LAMLDLLH-VARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGD--FGMARDI 234

Query: 246 KDGSYFK 252
               Y++
Sbjct: 235 YRAGYYR 241

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 64/344 (18%), Positives = 106/344 (30%), Gaps = 88/344 (25%)

Query: 92  PRYRI-LSKM-GEGTFGQVVECF-----DNEKKELVAIKIVRSI--NKYREAAMIEIDVL 142
           PR R+ L K  G G FGQV+E              VA+K+++    +    A M E+ +L
Sbjct: 20  PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL 79

Query: 143 QRLARHD-----IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLV 196
             +  H      +G   C            + ++ E     +L  +LR       P    
Sbjct: 80  IHIGHHLNVVNLLG--AC------TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTK 131

Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN--- 253
               RQ  + V  +        D    +    S+ +V+      +         +K+   
Sbjct: 132 GARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLT 191

Query: 254 ----------------------------------LPKSSAIKLIDFGSTTFEHQDHSYVV 279
                                             L + + +K+ DFG     ++D  YV 
Sbjct: 192 LEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVR 251

Query: 280 STRHYR-----APEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVL 334
                      APE I    +    D+WS G +L E+ S                    L
Sbjct: 252 KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS--------------------L 291

Query: 335 GPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR--DSMRAVWK 376
           G  P+   ++ D    +  + G R+  PD  T     +M   W 
Sbjct: 292 GASPYPG-VKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWH 334

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	433
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	100.0
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.95
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.93
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.89
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.79
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.37
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.24
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	99.17
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.15
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.76
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.73
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.43
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.4
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	98.33
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	98.23
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.17
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.14
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.83
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.81
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.64
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.6
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.56
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	97.56
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.43
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	97.4
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	97.39
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	97.26
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	97.06
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.05
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.8
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	96.67
3mes_A	424	Choline kinase; malaria, structural genomics, stru	96.02
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.31

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=5.2e-65  Score=480.79  Aligned_cols=257  Identities=25%  Similarity=0.421  Sum_probs=217.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|+++++||+|+||+||+|+++.+|+.||||++++.   ....+.+.+|+.++++++|+||     |++++++++++.+
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnI-----V~~~~~~~~~~~~   98 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNI-----VQYRESFEENGSL   98 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEEETTEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCC-----CcEEEEEEECCEE
Confidence            5899999999999999999999999999999999753   3445678899999999998887     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ||||||| ||+|.+++.......+++..++.|+.||+.||+|||++|||||||||+|||++.+|                
T Consensus        99 yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g----------------  162 (350)
T 4b9d_A           99 YIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDG----------------  162 (350)
T ss_dssp             EEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTC----------------
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCC----------------
Confidence            9999999 99999999876656789999999999999999999999999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                 .+||+|||+|+.....   ....+||+.|||||++.+..|+.++|||||||+||||++|+.||.+.+..
T Consensus       163 -----------~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~  231 (350)
T 4b9d_A          163 -----------TVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK  231 (350)
T ss_dssp             -----------CEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             -----------CEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH
Confidence                       5778888887765432   23468999999999999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +.+..+.+..  +|.                                               ....++.++++||.+||+
T Consensus       232 ~~~~~i~~~~--~~~-----------------------------------------------~~~~~s~~~~~li~~~L~  262 (350)
T 4b9d_A          232 NLVLKIISGS--FPP-----------------------------------------------VSLHYSYDLRSLVSQLFK  262 (350)
T ss_dssp             HHHHHHHHTC--CCC-----------------------------------------------CCTTSCHHHHHHHHHHTC
T ss_pred             HHHHHHHcCC--CCC-----------------------------------------------CCccCCHHHHHHHHHHcc
Confidence            7776665421  110                                               123457799999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          405 YDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      .||++|||++|+|+||||++...+.
T Consensus       263 ~dP~~R~s~~e~l~hp~~~~~~~~~  287 (350)
T 4b9d_A          263 RNPRDRPSVNSILEKGFIAKRIEKF  287 (350)
T ss_dssp             SSGGGSCCHHHHHTSHHHHTTGGGT
T ss_pred             CChhHCcCHHHHhcCHHhhcCCCcC
Confidence            9999999999999999999865543

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=5.8e-65  Score=472.76  Aligned_cols=249  Identities=27%  Similarity=0.407  Sum_probs=217.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||+||+|+++.+++.||||++.+.    ....+.+.+|+++|++++|+||     |+++++|++++.
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~l~~~~~~~~~  106 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFF-----VKLYFTFQDDEK  106 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTB-----CCEEEEEECSSE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEEeCCE
Confidence            4699999999999999999999999999999999753    2345678899999999988887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +||||||| ||+|.+++.+.+  .+++..++.++.||+.||+|||++|||||||||+|||++.+|               
T Consensus       107 ~yivmEy~~gG~L~~~i~~~~--~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g---------------  169 (311)
T 4aw0_A          107 LYFGLSYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM---------------  169 (311)
T ss_dssp             EEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS---------------
T ss_pred             EEEEEecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCC---------------
Confidence            99999999 999999998765  799999999999999999999999999999999999997665               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                  .+||+|||+|+....     ...+.+||+.|||||++.+..|+.++|||||||++|+|++|+.||.+.
T Consensus       170 ------------~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  237 (311)
T 4aw0_A          170 ------------HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  237 (311)
T ss_dssp             ------------CEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ------------CEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                        467777777765422     123468999999999999999999999999999999999999999998


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +..+.+..|.+....+|                                                  ..+++++++||.+
T Consensus       238 ~~~~~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~dli~~  267 (311)
T 4aw0_A          238 NEGLIFAKIIKLEYDFP--------------------------------------------------EKFFPKARDLVEK  267 (311)
T ss_dssp             SHHHHHHHHHHTCCCCC--------------------------------------------------TTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCC--------------------------------------------------cccCHHHHHHHHH
Confidence            88777777655332222                                                  2457789999999


Q ss_pred             hcccCCCCCCCHHH------HhcCCCCCC
Q 013941          402 LLRYDPAERLKARE------ALRHPFFTR  424 (433)
Q Consensus       402 ~L~~dP~~R~ta~e------ll~hp~f~~  424 (433)
                      ||+.||++|+|++|      |++||||++
T Consensus       268 lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~  296 (311)
T 4aw0_A          268 LLVLDATKRLGCEEMEGYGPLKAHPFFES  296 (311)
T ss_dssp             HSCSSGGGSTTSGGGTCHHHHHTSGGGTT
T ss_pred             HccCCHhHCcChHHHcCCHHHHCCCCcCC
Confidence            99999999999988      589999986

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.9e-64  Score=476.29  Aligned_cols=254  Identities=26%  Similarity=0.440  Sum_probs=218.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +.|+++++||+|+||+||+|+++.+|+.||||+++... ...+.+.+|+.+|+.++|+||     |+++++|++++.+||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnI-----V~l~~~~~~~~~~~i  148 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENV-----VEMYNSYLVGDELWV  148 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTB-----CCEEEEEEETTEEEE
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCC-----CcEEEEEEECCEEEE
Confidence            56999999999999999999999999999999997433 334567899999999998887     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||| ||+|.+++.+.   .+++..++.|+.||+.||+|||++|||||||||+||||+.+|                  
T Consensus       149 vmEy~~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g------------------  207 (346)
T 4fih_A          149 VMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG------------------  207 (346)
T ss_dssp             EECCCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC------------------
T ss_pred             EEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCC------------------
Confidence            99999 99999999864   599999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                               .+||+|||+|......   ..+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+.
T Consensus       208 ---------~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~  278 (346)
T 4fih_A          208 ---------RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKA  278 (346)
T ss_dssp             ---------CEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH
T ss_pred             ---------CEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHH
Confidence                     5677777777654322   3456999999999999999999999999999999999999999998887777


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      +..+.....+..                                               .....+++++++||.+||+.|
T Consensus       279 ~~~i~~~~~~~~-----------------------------------------------~~~~~~s~~~~dli~~~L~~d  311 (346)
T 4fih_A          279 MKMIRDNLPPRL-----------------------------------------------KNLHKVSPSLKGFLDRLLVRD  311 (346)
T ss_dssp             HHHHHHSSCCCC-----------------------------------------------SCGGGSCHHHHHHHHHHSCSS
T ss_pred             HHHHHcCCCCCC-----------------------------------------------CccccCCHHHHHHHHHHcCCC
Confidence            666654221110                                               112345789999999999999


Q ss_pred             CCCCCCHHHHhcCCCCCCCcc
Q 013941          407 PAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       407 P~~R~ta~ell~hp~f~~~~~  427 (433)
                      |++|||++|+|+||||++...
T Consensus       312 P~~R~ta~e~l~Hp~~~~~~~  332 (346)
T 4fih_A          312 PAQRATAAELLKHPFLAKAGP  332 (346)
T ss_dssp             TTTSCCHHHHTTCGGGGGCCC
T ss_pred             hhHCcCHHHHhcCHhhcCCCC
Confidence            999999999999999997543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2.2e-64  Score=462.65  Aligned_cols=251  Identities=25%  Similarity=0.445  Sum_probs=206.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||+||+|++..+|+.||||++++..    .....+.+|+.++++++|+||     |++++++++.+.
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnI-----v~~~~~~~~~~~   87 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHI-----IKLYDVIKSKDE   87 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTB-----CCEEEEEECSSE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCC-----CeEEEEEEECCE
Confidence            57999999999999999999999999999999997532    334678899999999998887     999999999999


Q ss_pred             EEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          168 ICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       168 ~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      +|||||||+|+|.+++.+++  .+++..++.++.||+.||+|||++||+||||||+|||++.+|                
T Consensus        88 ~~ivmEy~~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~----------------  149 (275)
T 3hyh_A           88 IIMVIEYAGNELFDYIVQRD--KMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHL----------------  149 (275)
T ss_dssp             EEEEEECCCEEHHHHHHHSC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTC----------------
T ss_pred             EEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCC----------------
Confidence            99999999999999998765  799999999999999999999999999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCC-CccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                 .+||+|||+|+.....  ..+.+||+.|||||++.+..| +.++|||||||++|+|++|+.||.+.+..
T Consensus       150 -----------~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~  218 (275)
T 3hyh_A          150 -----------NVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP  218 (275)
T ss_dssp             -----------CEEECCSSCC---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             -----------CEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHH
Confidence                       5777888877654332  244689999999999998876 58999999999999999999999988776


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+......+|                                                  ..+++++++||.+||+
T Consensus       219 ~~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~~li~~~L~  248 (275)
T 3hyh_A          219 VLFKNISNGVYTLP--------------------------------------------------KFLSPGAAGLIKRMLI  248 (275)
T ss_dssp             HHHHHHHHTCCCCC--------------------------------------------------TTSCHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCCCC--------------------------------------------------CCCCHHHHHHHHHHcc
Confidence            66665554322222                                                  2357789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCCc
Q 013941          405 YDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      .||++|||++|+++||||+.+.
T Consensus       249 ~dP~~R~s~~eil~hpw~k~~~  270 (275)
T 3hyh_A          249 VNPLNRISIHEIMQDDWFKVDL  270 (275)
T ss_dssp             SSGGGSCCHHHHHHCHHHHTTC
T ss_pred             CChhHCcCHHHHHcCcccccCC
Confidence            9999999999999999998754

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.9e-63  Score=480.67  Aligned_cols=254  Identities=26%  Similarity=0.444  Sum_probs=219.2

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .+.|+++++||+|+||.||+|+++.+|+.||||++.... ...+.+.+|+.+|+.++|+||     |+++++|.+++.+|
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnI-----V~l~~~~~~~~~~~  224 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENV-----VEMYNSYLVGDELW  224 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTB-----CCEEEEEEETTEEE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCC-----CceEEEEEECCEEE
Confidence            457999999999999999999999999999999997433 344568899999999998887     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      |||||| ||+|.+++...   .+++..++.|+.||+.||+|||++|||||||||+||||+.+|                 
T Consensus       225 iVmEy~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g-----------------  284 (423)
T 4fie_A          225 VVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG-----------------  284 (423)
T ss_dssp             EEEECCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTC-----------------
T ss_pred             EEEeCCCCCcHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCC-----------------
Confidence            999999 99999999765   599999999999999999999999999999999999997665                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .+||+|||+|.....   .....+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+..+
T Consensus       285 ----------~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~  354 (423)
T 4fie_A          285 ----------RVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK  354 (423)
T ss_dssp             ----------CEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred             ----------CEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH
Confidence                      467777777765432   2345699999999999999999999999999999999999999999888877


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..|.....+.                                               ......+++++++||.+||+.
T Consensus       355 ~~~~i~~~~~~~-----------------------------------------------~~~~~~~s~~~~dli~~~L~~  387 (423)
T 4fie_A          355 AMKMIRDNLPPR-----------------------------------------------LKNLHKVSPSLKGFLDRLLVR  387 (423)
T ss_dssp             HHHHHHHSCCCC-----------------------------------------------CSCTTSSCHHHHHHHHHHSCS
T ss_pred             HHHHHHcCCCCC-----------------------------------------------CcccccCCHHHHHHHHHHcCC
Confidence            776664422110                                               011235678999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCc
Q 013941          406 DPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||++|+|++|+|+||||++..
T Consensus       388 dP~~R~ta~ell~Hp~~~~~~  408 (423)
T 4fie_A          388 DPAQRATAAELLKHPFLAKAG  408 (423)
T ss_dssp             STTTSCCHHHHTTCGGGGGCC
T ss_pred             ChhHCcCHHHHhcCHHhcCCC
Confidence            999999999999999999753

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=4.7e-62  Score=451.08  Aligned_cols=256  Identities=23%  Similarity=0.415  Sum_probs=208.5

Q ss_pred             ccCCCe-EEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           89 NLTPRY-RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        89 ~~~~~y-~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ...++| ++.++||+|+||+||+|++..+++.||+|++...   ....+.+.+|+.++++++||||     |+++++|++
T Consensus        22 ~~~gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnI-----V~~~~~~~~   96 (290)
T 3fpq_A           22 SNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI-----VRFYDSWES   96 (290)
T ss_dssp             CTTSSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEEEE
T ss_pred             CCCCceEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCC-----CcEEEEEee
Confidence            334555 7888999999999999999999999999998643   2345678899999999999888     999999865


Q ss_pred             ----CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccC
Q 013941          165 ----RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       165 ----~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d  237 (433)
                          .+.+||||||| ||+|.+++.+..  .+++..++.++.||+.||+|||++|  ||||||||+|||++.        
T Consensus        97 ~~~~~~~~~lvmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~--------  166 (290)
T 3fpq_A           97 TVKGKKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITG--------  166 (290)
T ss_dssp             EETTEEEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESS--------
T ss_pred             ccCCCcEEEEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEEC--------
Confidence                46799999999 999999998765  7999999999999999999999998  999999999999963        


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                        .++.+||+|||+|+..... ..+.+||+.|||||++.+ .|+.++|||||||++|||+||+.
T Consensus       167 ------------------~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~  227 (290)
T 3fpq_A          167 ------------------PTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEY  227 (290)
T ss_dssp             ------------------TTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------CCCCEEEEeCcCCEeCCCCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCC
Confidence                              2235788888888654433 345689999999999876 69999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+......+...... +..|.                                              ......+++++
T Consensus       228 Pf~~~~~~~~~~~~i~~-~~~~~----------------------------------------------~~~~~~~~~~~  260 (290)
T 3fpq_A          228 PYSECQNAAQIYRRVTS-GVKPA----------------------------------------------SFDKVAIPEVK  260 (290)
T ss_dssp             TTTTCSSHHHHHHHHTT-TCCCG----------------------------------------------GGGGCCCHHHH
T ss_pred             CCCCCCcHHHHHHHHHc-CCCCC----------------------------------------------CCCccCCHHHH
Confidence            99876554433222110 11110                                              11233467899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||.+||+.||++|||++|+|+||||+++
T Consensus       261 ~li~~~L~~dP~~R~s~~e~l~Hp~~~~~  289 (290)
T 3fpq_A          261 EIIEGCIRQNKDERYSIKDLLNHAFFQEE  289 (290)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHTSGGGC--
T ss_pred             HHHHHHccCChhHCcCHHHHhcCccccCC
Confidence            99999999999999999999999999874

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=3.8e-63  Score=460.59  Aligned_cols=249  Identities=29%  Similarity=0.475  Sum_probs=208.0

Q ss_pred             CCeEEeccccccccEEEEEEEec---CCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN---EKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ++|++++.||+|+||+||+|++.   .+++.||||++++..   .....+.+|+.++++++|+||     |+++++++++
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~l~~~~~~~   98 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFI-----VKLHYAFQTE   98 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTE-----ECEEEEEEET
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCC-----CeEEEEEEEC
Confidence            46999999999999999999874   467899999997532   233457789999999888777     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +.+||||||| ||+|.+++.+.+  .+++..++.++.||+.||+|||++|||||||||+|||++.+|             
T Consensus        99 ~~~~ivmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g-------------  163 (304)
T 3ubd_A           99 GKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEG-------------  163 (304)
T ss_dssp             TEEEEEECCCTTCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTS-------------
T ss_pred             CEEEEEEEcCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCC-------------
Confidence            9999999999 999999998765  799999999999999999999999999999999999997766             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                    .+||+|||+|+...   ....+.+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.
T Consensus       164 --------------~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~  229 (304)
T 3ubd_A          164 --------------HIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK  229 (304)
T ss_dssp             --------------CEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             --------------CEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc
Confidence                          46666666665432   2234468999999999999999999999999999999999999999998


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +..+.+..+.+....+|                                                  ..+++++++||.+
T Consensus       230 ~~~~~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~~li~~  259 (304)
T 3ubd_A          230 DRKETMTMILKAKLGMP--------------------------------------------------QFLSPEAQSLLRM  259 (304)
T ss_dssp             SHHHHHHHHHHCCCCCC--------------------------------------------------TTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCC--------------------------------------------------CcCCHHHHHHHHH
Confidence            88877776655332222                                                  2357799999999


Q ss_pred             hcccCCCCCCC-----HHHHhcCCCCCC
Q 013941          402 LLRYDPAERLK-----AREALRHPFFTR  424 (433)
Q Consensus       402 ~L~~dP~~R~t-----a~ell~hp~f~~  424 (433)
                      ||+.||++|||     ++|+++||||++
T Consensus       260 ~L~~dP~~R~ta~~~~~~eil~Hp~f~~  287 (304)
T 3ubd_A          260 LFKRNPANRLGAGPDGVEEIKRHSFFST  287 (304)
T ss_dssp             HTCSSGGGSTTCSTTTHHHHHTSGGGTT
T ss_pred             HcccCHHHCCCCCcCCHHHHHcCccccC
Confidence            99999999998     589999999986

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.5e-61  Score=466.74  Aligned_cols=284  Identities=27%  Similarity=0.480  Sum_probs=226.2

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec--
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD--  163 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~--  163 (433)
                      .+.++|++++.||+|+||+||+|+++.+|+.||||++++..   ...+.+.+|+.+|+.++|+||     |++++++.  
T Consensus        51 ~i~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnI-----v~l~~~~~~~  125 (398)
T 4b99_A           51 DVGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNI-----IAIKDILRPT  125 (398)
T ss_dssp             CCCSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTB-----CCEEEECCCS
T ss_pred             CCCCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCc-----ceEeeeeecc
Confidence            45578999999999999999999999999999999997532   334567889999999998887     99998765  


Q ss_pred             ----cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          164 ----YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       164 ----~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                          +.+.+|||||||+|+|.+++.+.+  .+++..++.++.||+.||+|||++|||||||||+|||++.+|.       
T Consensus       126 ~~~~~~~~~~ivmE~~~g~L~~~i~~~~--~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~-------  196 (398)
T 4b99_A          126 VPYGEFKSVYVVLDLMESDLHQIIHSSQ--PLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCE-------  196 (398)
T ss_dssp             SCTTTCCCEEEEEECCSEEHHHHHTSSS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCC-------
T ss_pred             cccccCCEEEEEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCC-------
Confidence                347899999999889999998764  7999999999999999999999999999999999999977664       


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCcccc-------CCCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHH
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH-------QDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~-------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el  311 (433)
                                          +||+|||+|+...       ....+.+||+.|||||++.+. .++.++||||+|||+|||
T Consensus       197 --------------------~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~el  256 (398)
T 4b99_A          197 --------------------LKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEM  256 (398)
T ss_dssp             --------------------EEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHH
T ss_pred             --------------------EEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHH
Confidence                                5666666665322       122346999999999999886 469999999999999999


Q ss_pred             HhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhh-hhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC
Q 013941          312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRR-AEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH  390 (433)
Q Consensus       312 ~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (433)
                      ++|++||.+.+..+++..|....+.++.......... ...+...     ++.               ..+.........
T Consensus       257 l~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~-----~~~---------------~~~~~~~~~~~~  316 (398)
T 4b99_A          257 LARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQS-----LPP---------------RQPVPWETVYPG  316 (398)
T ss_dssp             HHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHS-----SCC---------------CCCCCHHHHSTT
T ss_pred             HHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhc-----CCC---------------cCCCCHHHhCCC
Confidence            9999999999999999999999998876543221110 0000000     000               000011122345


Q ss_pred             chHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          391 SAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       391 ~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      .++++++||.+||++||++|+||+|+|+||||++..
T Consensus       317 ~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  352 (398)
T 4b99_A          317 ADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYH  352 (398)
T ss_dssp             CCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTC
T ss_pred             CCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCC
Confidence            678999999999999999999999999999999753

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.1e-61  Score=456.11  Aligned_cols=253  Identities=25%  Similarity=0.317  Sum_probs=211.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      +.|++.++||+|+||+||+|+++.+|+.||||+++....    ..+|+.+++.++|+||     |++++++.+++.+|||
T Consensus        58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~----~~~E~~il~~l~HpnI-----V~l~~~~~~~~~~~iv  128 (336)
T 4g3f_A           58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF----RVEELVACAGLSSPRI-----VPLYGAVREGPWVNIF  128 (336)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC----CTHHHHTTTTCCCTTB-----CCEEEEEEETTEEEEE
T ss_pred             hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh----HHHHHHHHHhCCCCCC-----CcEEEEEEECCEEEEE
Confidence            469999999999999999999999999999999975432    2469999999988877     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||| ||+|.+++.+.+  .+++..++.|+.||+.||+|||++|||||||||+||||+.+|                   
T Consensus       129 mEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g-------------------  187 (336)
T 4g3f_A          129 MELLEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDG-------------------  187 (336)
T ss_dssp             ECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTS-------------------
T ss_pred             EeccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCC-------------------
Confidence            9999 999999998765  799999999999999999999999999999999999997654                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC--------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD--------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~--------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                             ..+||+|||+|+.....        ....+||+.|||||++.+..|+.++|||||||++|||++|+.||.+.+
T Consensus       188 -------~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~  260 (336)
T 4g3f_A          188 -------SRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF  260 (336)
T ss_dssp             -------CCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTC
T ss_pred             -------CEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence                   14677777777654321        123589999999999999999999999999999999999999998766


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      .......+....  .|                                             ....++.+++++.+||.+|
T Consensus       261 ~~~~~~~i~~~~--~~---------------------------------------------~~~~~~~~s~~~~~li~~~  293 (336)
T 4g3f_A          261 RGPLCLKIASEP--PP---------------------------------------------IREIPPSCAPLTAQAIQEG  293 (336)
T ss_dssp             CSCCHHHHHHSC--CG---------------------------------------------GGGSCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC--CC---------------------------------------------chhcCccCCHHHHHHHHHH
Confidence            554444443311  00                                             0122345688999999999


Q ss_pred             cccCCCCCCCHHHH-------------hcCCCCCCCccc
Q 013941          403 LRYDPAERLKAREA-------------LRHPFFTRDVRR  428 (433)
Q Consensus       403 L~~dP~~R~ta~el-------------l~hp~f~~~~~~  428 (433)
                      |+.||++|||+.|+             |+|||+.+..++
T Consensus       294 L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~~~~P  332 (336)
T 4g3f_A          294 LRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEYKEP  332 (336)
T ss_dssp             TCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSSCCCC
T ss_pred             ccCCHhHCcCHHHHHHHHHHHHhhhhhccCCCcCCCCCC
Confidence            99999999999997             689999876443

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=7.2e-59  Score=444.90  Aligned_cols=308  Identities=24%  Similarity=0.378  Sum_probs=220.6

Q ss_pred             ccCCCeEEeccccccccEEEEEEEec---CCCcEEEEEEeccchhhHHHHHHHHHHHHHHH-hCCCCCcceeEecceecc
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDN---EKKELVAIKIVRSINKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~  164 (433)
                      .+.++|++.++||+|+||+||+|+++   .+++.||||++.... ....+.+|+++|+.+. |+||     ++++++|++
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~-~~~~~~~E~~~l~~~~~h~nI-----v~l~~~~~~   91 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS-HPIRIAAELQCLTVAGGQDNV-----MGVKYCFRK   91 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS-CHHHHHHHHHHHHHTCSBTTB-----CCCSEEEEE
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc-CHHHHHHHHHHHHHhcCCCCC-----ceEEEEEEE
Confidence            45678999999999999999999875   467899999986543 3456788999999884 6666     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeC-CcccccCccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSA-EYVKVPDYKFLS  242 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~-~~~~l~d~~~~~  242 (433)
                      .+++||||||| +++|.+++.     .+++..++.++.||+.||+|||++|||||||||+|||++.+ +.+||+|||+++
T Consensus        92 ~~~~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~  166 (361)
T 4f9c_A           92 NDHVVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQ  166 (361)
T ss_dssp             TTEEEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             CCEEEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCc
Confidence            99999999999 899999983     58999999999999999999999999999999999999876 778888888776


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCcc---------------ccCCCcccccCCcccchhhhhCC-CCCccchHHHHHH
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTF---------------EHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGC  306 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~---------------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~  306 (433)
                      ......           ..+.+|+.+..               ........+||+.|||||++.+. .|+.++||||+||
T Consensus       167 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~  235 (361)
T 4f9c_A          167 GTHDTK-----------IELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGV  235 (361)
T ss_dssp             ECTTCS-----------CGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHH
T ss_pred             ccCCcc-----------ccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHH
Confidence            543221           22233322111               01112345899999999999876 4899999999999


Q ss_pred             HHHHHHhCCCCC-CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHH----------HH
Q 013941          307 ILVELCSGEALF-QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA----------VW  375 (433)
Q Consensus       307 il~el~~g~~pf-~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  375 (433)
                      ++|||++|+.|| .+.++.+++..|...+|..+........  ... ...  ....+... .+.....          ..
T Consensus       236 il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~--~~~-~~~--~~~~p~~~-~~~~~~~~~~~~~~~p~~~  309 (361)
T 4f9c_A          236 IFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTF--GKS-ILC--SKEVPAQD-LRKLCERLRGMDSSTPKLT  309 (361)
T ss_dssp             HHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHT--TEE-EEE--SSCCCCCC-HHHHHHHHC----------
T ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhc--ccc-ccc--cccCcchh-hhHHHHhhccccccccccc
Confidence            999999999998 4566778888898888754322211110  000 000  00011000 0000000          00


Q ss_pred             HhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          376 KLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      ............+..++++++|||.+||++||++|+||+|+|+||||++
T Consensus       310 ~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~Hp~f~~  358 (361)
T 4f9c_A          310 SDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALLHPFFKD  358 (361)
T ss_dssp             ------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGTT
T ss_pred             cccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCC
Confidence            0000011112334567889999999999999999999999999999986

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=7.4e-58  Score=426.61  Aligned_cols=264  Identities=26%  Similarity=0.341  Sum_probs=191.8

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC----
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN----  166 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~----  166 (433)
                      +|++++.||+|+||+||+|+++.+|+.||||+++..  ....+.+.+|+.+|++++|+||     |+++++|.+.+    
T Consensus         6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnI-----V~~~~~~~~~~~~~~   80 (299)
T 4g31_A            6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGI-----VRYFNAWLEKNTTEK   80 (299)
T ss_dssp             HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEEEEEC----
T ss_pred             hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEEecCcccc
Confidence            599999999999999999999999999999998643  3345678899999999998887     99999886533    


Q ss_pred             --------eEEEEEccC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          167 --------HICIVFEKL-GPSLYDFLRKNSY-RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       167 --------~~~lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                              ++||||||| +|+|.+++..... ...++..++.++.||+.||+|||++|||||||||+|||++.+|.+||+
T Consensus        81 ~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~  160 (299)
T 4g31_A           81 LQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVG  160 (299)
T ss_dssp             ------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred             ccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEc
Confidence                    479999999 9999999986542 234567789999999999999999999999999999999877765555


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                      |||+++....+......        ...    .......+..+||+.|||||++.+..|+.++|||||||++|||++   
T Consensus       161 DFGla~~~~~~~~~~~~--------~~~----~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---  225 (299)
T 4g31_A          161 DFGLVTAMDQDEEEQTV--------LTP----MPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---  225 (299)
T ss_dssp             CCCCC--------------------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---
T ss_pred             cCccceecCCCcccccc--------ccc----cccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---
Confidence            55554333221110000        000    000011233589999999999999999999999999999999996   


Q ss_pred             CCCCCChHHHHHHHHHHh-cCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          317 LFQTHENLEHLAMMERVL-GPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      ||.+.  .+....+.... ..+|+.+                                               ...++.+
T Consensus       226 Pf~~~--~~~~~~~~~~~~~~~p~~~-----------------------------------------------~~~~~~~  256 (299)
T 4g31_A          226 PFSTQ--MERVRTLTDVRNLKFPPLF-----------------------------------------------TQKYPCE  256 (299)
T ss_dssp             CCSSH--HHHHHHHHHHHTTCCCHHH-----------------------------------------------HHHCHHH
T ss_pred             CCCCc--cHHHHHHHHHhcCCCCCCC-----------------------------------------------cccCHHH
Confidence            77542  22222222221 1222111                                               1124467


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .+||.+||+.||++|||+.|+|+||||++-
T Consensus       257 ~~li~~~L~~dP~~Rps~~eil~h~~~~~~  286 (299)
T 4g31_A          257 YVMVQDMLSPSPMERPEAINIIENAVFEDL  286 (299)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHTSGGGCCC
T ss_pred             HHHHHHHcCCChhHCcCHHHHhcCHhhCCC
Confidence            899999999999999999999999999863

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=3.3e-57  Score=458.61  Aligned_cols=260  Identities=28%  Similarity=0.442  Sum_probs=225.1

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .+.++|++++.||+|+||+||+|+++.+|+.||+|++.... ...+.+.+|+.+|+.++|+||     |+++++|++.+.
T Consensus       154 ~il~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnI-----v~l~~~~~~~~~  228 (573)
T 3uto_A          154 HVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL-----VNLHDAFEDDNE  228 (573)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTB-----CCEEEEEECSSE
T ss_pred             cCccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCC-----CeEEEEEEECCE
Confidence            34568999999999999999999999999999999987543 345678899999999998887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +||||||| ||+|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.+                
T Consensus       229 ~~iv~E~~~gg~L~~~i~~~~-~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~----------------  291 (573)
T 3uto_A          229 MVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTK----------------  291 (573)
T ss_dssp             EEEEEECCCCCBHHHHHTCTT-SCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSS----------------
T ss_pred             EEEEEeecCCCcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCC----------------
Confidence            99999999 999999996543 369999999999999999999999999999999999999643                


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                               ..+.+||+|||+|.......  ...+||+.|||||++.+..|+.++|||||||++|||++|..||.+.+..
T Consensus       292 ---------~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~  362 (573)
T 3uto_A          292 ---------RSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD  362 (573)
T ss_dssp             ---------SCCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH
T ss_pred             ---------CCCCEEEeeccceeEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH
Confidence                     23468999999988765433  3468999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +.+..+......++.                                              .....++.++++||.+||+
T Consensus       363 ~~~~~i~~~~~~~~~----------------------------------------------~~~~~~s~~~~dli~~~L~  396 (573)
T 3uto_A          363 ETLRNVKSCDWNMDD----------------------------------------------SAFSGISEDGKDFIRKLLL  396 (573)
T ss_dssp             HHHHHHHTTCCCCCS----------------------------------------------GGGTTSCHHHHHHHHTTSC
T ss_pred             HHHHHHHhCCCCCCc----------------------------------------------ccccCCCHHHHHHHHHHcc
Confidence            877777654333322                                              1123457899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .||++|||++|+|+||||+..
T Consensus       397 ~dp~~R~t~~e~l~Hpw~~~~  417 (573)
T 3uto_A          397 ADPNTRMTIHQALEHPWLTPG  417 (573)
T ss_dssp             SSGGGSCCHHHHHHSTTTSCC
T ss_pred             CChhHCcCHHHHhcCcCcCCC
Confidence            999999999999999999964

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.2e-57  Score=424.50  Aligned_cols=251  Identities=21%  Similarity=0.318  Sum_probs=207.5

Q ss_pred             CCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccc-hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSI-NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ++|.+.++||+|+||+||+|++.     .+++.||||+++.. ....+.+.+|++++++++|+||     |++++++.++
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnI-----V~l~g~~~~~   87 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHI-----VKFYGVCVEG   87 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEECSS
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCC-----ccEEEEEeeC
Confidence            57999999999999999999864     36789999999754 3445778899999999998888     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcC-----------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcc
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNS-----------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYV  233 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~-----------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~  233 (433)
                      +.+||||||| +|+|.+++...+           ...+++..+..|+.||+.||+|||+++||||||||+|||++.++  
T Consensus        88 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~--  165 (299)
T 4asz_A           88 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENL--  165 (299)
T ss_dssp             SSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG--
T ss_pred             CEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCC--
Confidence            9999999999 999999997642           24699999999999999999999999999999999999997655  


Q ss_pred             cccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHH
Q 013941          234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL  308 (433)
Q Consensus       234 ~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il  308 (433)
                                               .+||+|||+|+.....     .....||+.|||||++.+..|+.++|||||||++
T Consensus       166 -------------------------~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl  220 (299)
T 4asz_A          166 -------------------------LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVL  220 (299)
T ss_dssp             -------------------------CEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             -------------------------cEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHH
Confidence                                     5677777777643322     1224789999999999999999999999999999


Q ss_pred             HHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhc
Q 013941          309 VELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH  387 (433)
Q Consensus       309 ~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (433)
                      |||+| |+.||.+.+..+.+..+.+...  +                                               ..
T Consensus       221 ~Ellt~G~~Pf~~~~~~~~~~~i~~~~~--~-----------------------------------------------~~  251 (299)
T 4asz_A          221 WEIFTYGKQPWYQLSNNEVIECITQGRV--L-----------------------------------------------QR  251 (299)
T ss_dssp             HHHHTTTCCTTTTSCHHHHHHHHHHTCC--C-----------------------------------------------CC
T ss_pred             HHHHcCCCCCCCCCCHHHHHHHHHcCCC--C-----------------------------------------------CC
Confidence            99998 9999998887776665544211  0                                               01


Q ss_pred             cCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       388 ~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +..+++++.+||.+||+.||++|||++||  |+|+++-
T Consensus       252 p~~~~~~~~~li~~cl~~dP~~RPs~~~i--~~~L~~~  287 (299)
T 4asz_A          252 PRTCPQEVYELMLGCWQREPHMRKNIKGI--HTLLQNL  287 (299)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHH--HHHHHHH
T ss_pred             CccchHHHHHHHHHHcCCChhHCcCHHHH--HHHHHHH
Confidence            23457789999999999999999999999  4677653

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=5.2e-57  Score=454.75  Aligned_cols=256  Identities=24%  Similarity=0.376  Sum_probs=204.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||+||+|+++.+|+.||||++++..    .......+|..++..+.+  +.|||||+++++|++.+.
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~--~~HP~IV~l~~~f~~~~~  266 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST--GDCPFIVCMSYAFHTPDK  266 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSS--SCCTTBCCEEEEEECSSE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhh--CCCCCEeEEEEEEEECCE
Confidence            57999999999999999999999999999999997532    222344455544444432  133455999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +||||||| ||+|.+++.+.+  .+++..++.|+.||+.||+|||++|||||||||+||||+.+|               
T Consensus       267 lylVmEy~~GGdL~~~l~~~~--~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G---------------  329 (689)
T 3v5w_A          267 LSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHG---------------  329 (689)
T ss_dssp             EEEEECCCCSCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTS---------------
T ss_pred             EEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCC---------------
Confidence            99999999 999999998875  799999999999999999999999999999999999997766               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                  .+||+|||+|..... ...+.+||+.|||||++.+ ..|+.++|||||||+||||++|.+||.+.+..
T Consensus       330 ------------~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~  397 (689)
T 3v5w_A          330 ------------HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK  397 (689)
T ss_dssp             ------------CEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC
T ss_pred             ------------CEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence                        466777777654433 2345699999999999974 57999999999999999999999999764332


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+.......                                               ...+..+++++++||.+||+
T Consensus       398 ~~~~i~~~i~~~~-----------------------------------------------~~~p~~~S~~a~dLI~~lL~  430 (689)
T 3v5w_A          398 DKHEIDRMTLTMA-----------------------------------------------VELPDSFSPELRSLLEGLLQ  430 (689)
T ss_dssp             CHHHHHHHHHHCC-----------------------------------------------CCCCTTSCHHHHHHHHHHTC
T ss_pred             HHHHHHHhhcCCC-----------------------------------------------CCCCccCCHHHHHHHHHHcc
Confidence            2211111111100                                               01223567899999999999


Q ss_pred             cCCCCCCC-----HHHHhcCCCCCCC
Q 013941          405 YDPAERLK-----AREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~t-----a~ell~hp~f~~~  425 (433)
                      .||++|++     ++||++||||++.
T Consensus       431 ~dP~~Rl~~~~~ga~ei~~HpfF~~i  456 (689)
T 3v5w_A          431 RDVNRRLGCLGRGAQEVKESPFFRSL  456 (689)
T ss_dssp             SCGGGCTTCSSSTHHHHTTSGGGTTC
T ss_pred             CCHhHCCCCCCCCHHHHhcCccccCC
Confidence            99999998     8999999999873

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=4.3e-56  Score=419.62  Aligned_cols=247  Identities=21%  Similarity=0.333  Sum_probs=201.9

Q ss_pred             CCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ++|.+.++||+|+||+||+|++.     .+++.||||+++... ...+.+.+|+.+|++++|+||     |++++++.+.
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnI-----V~l~g~~~~~  115 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHI-----VRFFGVCTEG  115 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEECSS
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCC-----CcEEEEEEEC
Confidence            56899999999999999999864     468899999997543 445778999999999998888     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcC-------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNS-------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~-------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      +.+||||||| +|+|.+++....             ...+++.++..|+.||+.||+|||+++||||||||+|||++.++
T Consensus       116 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~  195 (329)
T 4aoj_A          116 RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGL  195 (329)
T ss_dssp             SSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTT
T ss_pred             CEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCC
Confidence            9999999999 999999997643             13589999999999999999999999999999999999998766


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGC  306 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~  306 (433)
                                                 .+||+|||+|+.....     ....+||+.|||||++.+..|+.++|||||||
T Consensus       196 ---------------------------~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gv  248 (329)
T 4aoj_A          196 ---------------------------VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGV  248 (329)
T ss_dssp             ---------------------------EEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHH
T ss_pred             ---------------------------cEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHH
Confidence                                       4566666666543221     12357999999999999999999999999999


Q ss_pred             HHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          307 ILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       307 il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      +||||+| |+.||.+.+..+.+..+.+...                       .                          
T Consensus       249 vl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~-----------------------~--------------------------  279 (329)
T 4aoj_A          249 VLWEIFTYGKQPWYQLSNTEAIDCITQGRE-----------------------L--------------------------  279 (329)
T ss_dssp             HHHHHHTTSCCTTCSSCHHHHHHHHHHTCC-----------------------C--------------------------
T ss_pred             HHHHHHcCCCCCCCCCCHHHHHHHHHcCCC-----------------------C--------------------------
Confidence            9999999 9999998887776665543210                       0                          


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ..+..+++++.+||.+||+.||++|||++||+++
T Consensus       280 ~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~  313 (329)
T 4aoj_A          280 ERPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR  313 (329)
T ss_dssp             CCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHH
T ss_pred             CCcccccHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence            1123457789999999999999999999999864

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-56  Score=414.96  Aligned_cols=245  Identities=23%  Similarity=0.359  Sum_probs=194.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +++++.++||+|+||+||+|+...   .||||+++..   ....+.+.+|+.++++++|+||     |++++++.. +.+
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~~---~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNI-----V~l~g~~~~-~~~  106 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWHG---DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNI-----LLFMGYMTK-DNL  106 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESSS---EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEECS-SSC
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECC---cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEEC-CeE
Confidence            568999999999999999998543   4999998642   3445678899999999999888     999998765 568


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ||||||| +|+|.+++.... ..+++..+..|+.||+.||+|||+++||||||||+|||+++++                
T Consensus       107 ~iVmEy~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~----------------  169 (307)
T 3omv_A          107 AIVTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGL----------------  169 (307)
T ss_dssp             EEEEECCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTE----------------
T ss_pred             EEEEEcCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCC----------------
Confidence            9999999 999999997654 4699999999999999999999999999999999999998766                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCC---CCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~---~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                 .+||+|||+|+....     .....+||+.|||||++.+.   .|+.++|||||||+||||+||+.||.
T Consensus       170 -----------~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~  238 (307)
T 3omv_A          170 -----------TVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYS  238 (307)
T ss_dssp             -----------EEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             -----------cEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCC
Confidence                       456666666654322     12335899999999999753   58999999999999999999999998


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      +.+....+..+.......|.                                            .......++.++.+||
T Consensus       239 ~~~~~~~~~~~~~~~~~~p~--------------------------------------------~~~~~~~~~~~l~~li  274 (307)
T 3omv_A          239 HINNRDQIIFMVGRGYASPD--------------------------------------------LSKLYKNCPKAMKRLV  274 (307)
T ss_dssp             TCCCHHHHHHHHHTTCCCCC--------------------------------------------STTSCTTSCHHHHHHH
T ss_pred             CCChHHHHHHHHhcCCCCCC--------------------------------------------cccccccchHHHHHHH
Confidence            87766554443322111110                                            0112235677999999


Q ss_pred             HHhcccCCCCCCCHHHHh
Q 013941          400 QGLLRYDPAERLKAREAL  417 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell  417 (433)
                      .+||+.||++|||+.||+
T Consensus       275 ~~cl~~dP~~RPs~~ei~  292 (307)
T 3omv_A          275 ADCVKKVKEERPLFPQIL  292 (307)
T ss_dssp             HHHTCSSSTTSCCHHHHH
T ss_pred             HHHcCCCHhHCcCHHHHH
Confidence            999999999999999864

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=3.7e-56  Score=416.24  Aligned_cols=247  Identities=21%  Similarity=0.263  Sum_probs=204.5

Q ss_pred             CCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..+++.++||+|+||+||+|+..     .+++.||||+++..  ....+.+.+|+.++.+++|+||     |++++++.+
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNI-----V~l~g~~~~  100 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNV-----VCLLGVVTK  100 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTB-----CCEEEEECS
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCC-----CCcceEEEE
Confidence            46899999999999999999853     46789999999643  2345778999999999999888     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                      ++.+||||||| +|+|.++|....              ...+++..+..|+.||+.||+|||+++||||||||+|||+++
T Consensus       101 ~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~  180 (308)
T 4gt4_A          101 DQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYD  180 (308)
T ss_dssp             SSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECG
T ss_pred             CCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECC
Confidence            99999999999 999999997532              135899999999999999999999999999999999999976


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCCCCCccchHHHH
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSV  304 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  304 (433)
                      ++                           .+||+|||+|+....     .....+||+.|||||++.+..|+.++|||||
T Consensus       181 ~~---------------------------~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSf  233 (308)
T 4gt4_A          181 KL---------------------------NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSY  233 (308)
T ss_dssp             GG---------------------------CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             CC---------------------------CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhH
Confidence            65                           467777777654322     1233589999999999999999999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhh
Q 013941          305 GCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL  383 (433)
Q Consensus       305 G~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (433)
                      ||+||||+| |..||.+.+..+....+.....                       .                        
T Consensus       234 Gvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~~-----------------------~------------------------  266 (308)
T 4gt4_A          234 GVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQV-----------------------L------------------------  266 (308)
T ss_dssp             HHHHHHHHTTTCCTTTTCCHHHHHHHHHTTCC-----------------------C------------------------
T ss_pred             HHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC-----------------------C------------------------
Confidence            999999998 8999999887776655543110                       0                        


Q ss_pred             hhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       384 ~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                        ..++.++.++.+||.+||+.||++|||+.||+++
T Consensus       267 --~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~  300 (308)
T 4gt4_A          267 --PCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSR  300 (308)
T ss_dssp             --CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --CCcccchHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence              0123457789999999999999999999999865

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=9.4e-55  Score=419.20  Aligned_cols=341  Identities=38%  Similarity=0.696  Sum_probs=268.0

Q ss_pred             CCCCCCceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcc
Q 013941           75 PDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTR  154 (433)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~  154 (433)
                      .++....+.+..++.+.++|+++++||+|+||+||+|++..+++.||||+++...........|+.+++.+.+..+.|+|
T Consensus        18 ~~~~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~   97 (360)
T 3llt_A           18 GDDEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNN   97 (360)
T ss_dssp             --CGGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGG
T ss_pred             cCccceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCC
Confidence            34455567788899999999999999999999999999999999999999987666667788899999999977777888


Q ss_pred             eeEecceeccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccc
Q 013941          155 CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       155 ~v~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~  234 (433)
                      ++++++++...+..|+||||++++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.....+
T Consensus        98 iv~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~  177 (360)
T 3llt_A           98 IVKYHGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEK  177 (360)
T ss_dssp             BCCEEEEEEETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCE
T ss_pred             eecccceeeECCeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccc
Confidence            89999999999999999999999999999987666799999999999999999999999999999999999997532110


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhC
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g  314 (433)
                      -.  .-...................+||+|||++...........||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       178 ~~--~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g  255 (360)
T 3llt_A          178 SL--ITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTG  255 (360)
T ss_dssp             EE--EEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             cc--cchhcccccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHC
Confidence            00  0000000000000000235679999999998777666677899999999999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhh--hhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEK--YFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      +.||.+.+..+.+..+....+++|..+..........  .........|+..................      .....+
T Consensus       256 ~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------~~~~~~  329 (360)
T 3llt_A          256 SLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPL------YKIIKH  329 (360)
T ss_dssp             SCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCH------HHHCCC
T ss_pred             CCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccc------cccchH
Confidence            9999999999999999999999998877665432221  22233344566655444433322221111      112235


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      +.+.+||.+||+.||++|||++|+|+||||+
T Consensus       330 ~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          330 ELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             HHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             HHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence            6899999999999999999999999999996

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=1.8e-53  Score=419.02  Aligned_cols=324  Identities=34%  Similarity=0.605  Sum_probs=253.9

Q ss_pred             CCCceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCC-CCCccee
Q 013941           78 KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHD-IGGTRCV  156 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~-i~~~~~v  156 (433)
                      ..+.+....++.+..+|++++.||+|+||.||+|++..+++.||||+++........+.+|+.+++.+.|.. ..++|++
T Consensus        83 ~~~~~~~~~~~~~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv  162 (429)
T 3kvw_A           83 DQGSYVQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVI  162 (429)
T ss_dssp             TTSCBCCCTTCEETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBC
T ss_pred             cCCCccccCCCcccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEE
Confidence            344555556778889999999999999999999999999999999999877666778889999999998763 3557889


Q ss_pred             EecceeccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          157 QIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       157 ~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                      ++++++...+.+|+||||++++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.++.    
T Consensus       163 ~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~----  238 (429)
T 3kvw_A          163 HMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGR----  238 (429)
T ss_dssp             CEEEEEEETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTS----
T ss_pred             EEEeecccCCeEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCC----
Confidence            9999999999999999999889999998876667999999999999999999999999999999999999976441    


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                           ..+||+|||++..........+||+.|+|||++.+..++.++|||||||++|||++|..
T Consensus       239 ---------------------~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~  297 (429)
T 3kvw_A          239 ---------------------SGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYP  297 (429)
T ss_dssp             ---------------------CCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ---------------------cceEEeecccceecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCC
Confidence                                 23899999999877666666799999999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhH----------HHHHHhcCchhhhhh
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSM----------RAVWKLLRLPNLIMQ  386 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~  386 (433)
                      ||.+.+..+.+..+...++.++..++....... .++.......+..........          ...............
T Consensus       298 pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (429)
T 3kvw_A          298 LLPGEDEGDQLACMIELLGMPSQKLLDASKRAK-NFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNA  376 (429)
T ss_dssp             SSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHH-HHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhh-hccCCCCCcccccccccccccccccccccchhhccCCccchhhHhh
Confidence            999999999999999999998887766544332 222222111110000000000          000000000001111


Q ss_pred             ccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       387 ~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .....++.+.+||.+||++||++|||++|+|+||||++...
T Consensus       377 l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~~~  417 (429)
T 3kvw_A          377 LKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRLP  417 (429)
T ss_dssp             TTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC----
T ss_pred             ccccchHHHHHHHHHHCCCChhhCCCHHHHhCChhhccCCC
Confidence            22344778999999999999999999999999999998644

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.9e-54  Score=411.65  Aligned_cols=248  Identities=22%  Similarity=0.326  Sum_probs=199.1

Q ss_pred             CCCeEEeccccccccEEEEEEEecCC-----CcEEEEEEeccch--hhHHHHHHHHHHHHHHHh-CCCCCcceeEeccee
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEK-----KELVAIKIVRSIN--KYREAAMIEIDVLQRLAR-HDIGGTRCVQIRNWF  162 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~-----~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~-~~i~~~~~v~~~~~~  162 (433)
                      .++|++.+.||+|+||+||+|++..+     ++.||||+++...  ...+.+.+|+.+|.++.| +||     |++++++
T Consensus        63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnI-----V~l~g~~  137 (353)
T 4ase_A           63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNV-----VNLLGAC  137 (353)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEE
T ss_pred             HHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcE-----EEEEEEE
Confidence            36899999999999999999987654     4689999987532  345678899999999987 456     9999988


Q ss_pred             cc-CCeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEE
Q 013941          163 DY-RNHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENIL  226 (433)
Q Consensus       163 ~~-~~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIl  226 (433)
                      .. ++.+||||||| +|+|.++|....              ...+++..+..++.||+.||+|||+++||||||||+|||
T Consensus       138 ~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NIL  217 (353)
T 4ase_A          138 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL  217 (353)
T ss_dssp             CCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             EecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCcccee
Confidence            65 56799999999 999999997532              235899999999999999999999999999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchH
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDL  301 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di  301 (433)
                      +++++.                           +||+|||+|+.....     ....+||+.|||||++.+..|+.++||
T Consensus       218 l~~~~~---------------------------vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDV  270 (353)
T 4ase_A          218 LSEKNV---------------------------VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDV  270 (353)
T ss_dssp             ECGGGC---------------------------EEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHH
T ss_pred             eCCCCC---------------------------EEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccE
Confidence            987765                           555555555433221     123578999999999999999999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCChHHHH-HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcC
Q 013941          302 WSVGCILVELCS-GEALFQTHENLEHL-AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR  379 (433)
Q Consensus       302 wSlG~il~el~~-g~~pf~~~~~~~~~-~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (433)
                      |||||+||||+| |..||.+.+..+.+ ..+....                       +.                    
T Consensus       271 wS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~-----------------------~~--------------------  307 (353)
T 4ase_A          271 WSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT-----------------------RM--------------------  307 (353)
T ss_dssp             HHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTC-----------------------CC--------------------
T ss_pred             eehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCC-----------------------CC--------------------
Confidence            999999999998 99999876543333 2222210                       00                    


Q ss_pred             chhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                            ..++.+++++.+||.+||+.||++|||+.||++|
T Consensus       308 ------~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~  341 (353)
T 4ase_A          308 ------RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  341 (353)
T ss_dssp             ------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------CCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence                  1123457789999999999999999999999987

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1e-52  Score=410.09  Aligned_cols=340  Identities=30%  Similarity=0.540  Sum_probs=256.3

Q ss_pred             CCCCceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCC---Cc
Q 013941           77 DKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG---GT  153 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~---~~  153 (433)
                      ...+++++..|+.+.++|++.++||+|+||+||+|++..+++.||||+++......+.+.+|+.+++.+.|.+..   |+
T Consensus        22 ~~~~~~~~~~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~  101 (397)
T 1wak_A           22 CKGGYHLVKIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNRE  101 (397)
T ss_dssp             CC--CCSSCTTCEETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGG
T ss_pred             CCCCceEEehhhhcCCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcc
Confidence            345677888999999999999999999999999999999999999999987766677889999999999976543   46


Q ss_pred             ceeEecceec----cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEEe
Q 013941          154 RCVQIRNWFD----YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILLV  228 (433)
Q Consensus       154 ~~v~~~~~~~----~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli~  228 (433)
                      +++++++++.    ....+|+||||++++|.+.+.......+++..++.++.||+.||+|||++ ||+||||||+|||++
T Consensus       102 ~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~  181 (397)
T 1wak_A          102 MVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLS  181 (397)
T ss_dssp             GBCCEEEEEEEEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEEC
T ss_pred             eeeeeecceeecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEe
Confidence            6899999887    56789999999988998888776556799999999999999999999998 999999999999998


Q ss_pred             eCCcccccCccccccCCCCC-----------------C-----cccCCCCCCCeeeecCCCCccccCCCcccccCCcccc
Q 013941          229 SAEYVKVPDYKFLSRSSKDG-----------------S-----YFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRA  286 (433)
Q Consensus       229 ~~~~~~l~d~~~~~~~~~~~-----------------~-----~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~a  286 (433)
                      .++.....+++........+                 .     ..........+||+|||++...........||+.|+|
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~a  261 (397)
T 1wak_A          182 VNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRS  261 (397)
T ss_dssp             CCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCC
T ss_pred             ccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccC
Confidence            77643222211111000000                 0     0000012347999999999877766666789999999


Q ss_pred             hhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCcccc
Q 013941          287 PEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD  360 (433)
Q Consensus       287 PE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~------~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  360 (433)
                      ||++.+..++.++|||||||++|+|++|..||.+.+      ....+..+....+.+|..+..........+...+....
T Consensus       262 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  341 (397)
T 1wak_A          262 LEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKH  341 (397)
T ss_dssp             HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSS
T ss_pred             ChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccc
Confidence            999999999999999999999999999999997655      56677888889999998776554333222222221111


Q ss_pred             CCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          361 WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      ....... ..........       ......+..+.+||.+||+.||++|||++|+|+||||++
T Consensus       342 ~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  397 (397)
T 1wak_A          342 ITKLKPW-GLFEVLVEKY-------EWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS  397 (397)
T ss_dssp             CCCCCCC-CHHHHHHHTS-------CCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGGGGC
T ss_pred             ccccCCc-chhHhhhhhc-------ccchhhHHHHHHHHHHHhccChhhcCCHHHHhhCccccC
Confidence            2111111 1111111111       112234678999999999999999999999999999974

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=3e-52  Score=397.77  Aligned_cols=331  Identities=47%  Similarity=0.858  Sum_probs=259.9

Q ss_pred             ceeeecCCccCCCeEEeccccccccEEEEEEEe-cCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCC-CCcceeEe
Q 013941           81 HYVFAIGENLTPRYRILSKMGEGTFGQVVECFD-NEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI-GGTRCVQI  158 (433)
Q Consensus        81 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i-~~~~~v~~  158 (433)
                      ++.+..|+.+.++|++.+.||+|+||.||+|.+ ..+++.||||+++......+.+.+|+.+++.+.|++. .+++++++
T Consensus         3 ~~~~~~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~   82 (339)
T 1z57_A            3 HLICQSGDVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQM   82 (339)
T ss_dssp             GGTCSTTCEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCE
T ss_pred             ceeeecCCCccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEee
Confidence            344566888889999999999999999999998 5688999999998766667788999999999998763 44567999


Q ss_pred             cceeccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          159 RNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       159 ~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                      ++++.+.+..|+||||++++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++..+.....+.
T Consensus        83 ~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~  162 (339)
T 1z57_A           83 LEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNP  162 (339)
T ss_dssp             EEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC-
T ss_pred             ecccccCCcEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCC
Confidence            99999999999999999999999998876567999999999999999999999999999999999999977543222111


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                      +....        .....+..+||+|||++...........||+.|+|||++.+..++.++|||||||++|||++|..||
T Consensus       163 ~~~~~--------~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf  234 (339)
T 1z57_A          163 KIKRD--------ERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVF  234 (339)
T ss_dssp             ---CE--------EEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ccccc--------cccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCC
Confidence            11000        0001145699999999987776666778999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ...+..+....+.+..+++|..+.......  .++. .....|............   ...............+.++.+|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l  308 (339)
T 1z57_A          235 PTHDSKEHLAMMERILGPLPKHMIQKTRKR--KYFH-HDRLDWDEHSSAGRYVSR---ACKPLKEFMLSQDVEHERLFDL  308 (339)
T ss_dssp             CCSCHHHHHHHHHHHHCSCCHHHHHHCSCG--GGEE-TTEECCCTTSHHHHHHHH---HCCCGGGGCSCCSHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHhCCCCHHHHhhccch--hHHh-hccccccccccccchhhh---cCcchhhhcccchhhHHHHHHH
Confidence            999999999999999999998776654321  1111 234455543322221111   1111111112223446789999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |.+||+.||++|||++|+++||||++-
T Consensus       309 i~~~L~~dP~~Rpt~~ell~hp~f~~~  335 (339)
T 1z57_A          309 IQKMLEYDPAKRITLREALKHPFFDLL  335 (339)
T ss_dssp             HHHHTCSSTTTSCCHHHHTTSGGGGGG
T ss_pred             HHHHhCcCcccccCHHHHhcCHHHHHH
Confidence            999999999999999999999999874

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.3e-52  Score=407.42  Aligned_cols=321  Identities=35%  Similarity=0.635  Sum_probs=250.6

Q ss_pred             CCceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHH-hCCCCCcceeE
Q 013941           79 DGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA-RHDIGGTRCVQ  157 (433)
Q Consensus        79 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~  157 (433)
                      ...|.+..++.+.++|++.+.||+|+||+||+|++..+++.||||+++..........+|+.+++.+. |+++.+.+++.
T Consensus        41 ~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~  120 (382)
T 2vx3_A           41 NYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVH  120 (382)
T ss_dssp             TSCBCCCTTCEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCC
T ss_pred             CCcEEeecCCEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEE
Confidence            34467788899999999999999999999999999999999999999876666677888999999997 55666677899


Q ss_pred             ecceeccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH--hCCcEecCCCCCcEEEeeCCcccc
Q 013941          158 IRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH--ELRLIHTDLKPENILLVSAEYVKV  235 (433)
Q Consensus       158 ~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH--~~~ivHrDikp~NIli~~~~~~~l  235 (433)
                      +++++...+..|+||||++++|.+++.......+++..++.++.||+.||.|||  +.|||||||||+|||++.+     
T Consensus       121 ~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~-----  195 (382)
T 2vx3_A          121 LKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNP-----  195 (382)
T ss_dssp             EEEEEEETTEEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESST-----
T ss_pred             eeeeeccCCceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecC-----
Confidence            999999999999999999889999998776567999999999999999999999  5799999999999999542     


Q ss_pred             cCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCC
Q 013941          236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                          .+..+||+|||++...........||+.|+|||++.+..++.++|||||||++|||++|+
T Consensus       196 --------------------~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~  255 (382)
T 2vx3_A          196 --------------------KRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGE  255 (382)
T ss_dssp             --------------------TSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             --------------------CCCcEEEEeccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCC
Confidence                                234689999999987766666678999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCC----------CCchhhHHHHHHhc-Cchhhh
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDG----------ATSRDSMRAVWKLL-RLPNLI  384 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~  384 (433)
                      .||.+.+..+.+..+.+..+.+|..+...... ...++.......|...          ......+....... ..+...
T Consensus       256 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  334 (382)
T 2vx3_A          256 PLFSGANEVDQMNKIVEVLGIPPAHILDQAPK-ARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGR  334 (382)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTT-HHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGT
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHH-HHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCcc
Confidence            99999999999999999988888766544322 2222222111111000          00000111111000 000000


Q ss_pred             h----hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          385 M----QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       385 ~----~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .    ......+.++.+||.+||++||++|||++|+|+||||++.
T Consensus       335 ~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~  379 (382)
T 2vx3_A          335 RAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKT  379 (382)
T ss_dssp             TTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC-
T ss_pred             ccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhcCcccccC
Confidence            0    0000113478999999999999999999999999999975

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=8.5e-53  Score=396.76  Aligned_cols=287  Identities=30%  Similarity=0.517  Sum_probs=222.6

Q ss_pred             cCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch------hhHHHHHHHHHHHHHHH---hCCCCCccee
Q 013941           86 IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN------KYREAAMIEIDVLQRLA---RHDIGGTRCV  156 (433)
Q Consensus        86 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~E~~~l~~l~---~~~i~~~~~v  156 (433)
                      +|+.+.++|++++.||+|+||+||+|++..+++.||||++....      .......+|+.+++.+.   |+|+     +
T Consensus         3 ~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni-----v   77 (308)
T 3g33_A            3 LGSMATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNV-----V   77 (308)
T ss_dssp             -------CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTB-----C
T ss_pred             CCcccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCe-----E
Confidence            45667789999999999999999999999999999999986422      22356778888888887   6666     9


Q ss_pred             EecceeccCC-----eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          157 QIRNWFDYRN-----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       157 ~~~~~~~~~~-----~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      ++++++....     .+++||||++++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~  157 (308)
T 3g33_A           78 RLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGG  157 (308)
T ss_dssp             CEEEEEEECCSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTS
T ss_pred             EeeeeeeccCCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCC
Confidence            9999887654     68999999988999999987655699999999999999999999999999999999999996554


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  309 (433)
                                                 .+||+|||++......  .....||+.|+|||++.+..++.++|||||||++|
T Consensus       158 ---------------------------~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  210 (308)
T 3g33_A          158 ---------------------------TVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFA  210 (308)
T ss_dssp             ---------------------------CEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHH
T ss_pred             ---------------------------CEEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHH
Confidence                                       5777888877654322  23468999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccC
Q 013941          310 ELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD  389 (433)
Q Consensus       310 el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (433)
                      +|++|..||.+.+..+.+..+....+.++...+........        ..++.               ..+........
T Consensus       211 ~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~---------------~~~~~~~~~~~  267 (308)
T 3g33_A          211 EMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPR--------GAFPP---------------RGPRPVQSVVP  267 (308)
T ss_dssp             HTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCG--------GGSCC---------------CCCCCHHHHSC
T ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccc--------cccCC---------------CCCCcHHHhCc
Confidence            99999999999999999998888887766432211100000        00000               01111222345


Q ss_pred             CchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          390 HSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       390 ~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .++.++.+||.+||++||++|||+.|+|+||||++...
T Consensus       268 ~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~~~  305 (308)
T 3g33_A          268 EMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDEG  305 (308)
T ss_dssp             SCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC-----
T ss_pred             cccHHHHHHHHHHhcCCCccCCCHHHHhcCccccCCCC
Confidence            67889999999999999999999999999999998643

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.2e-52  Score=398.68  Aligned_cols=252  Identities=25%  Similarity=0.384  Sum_probs=215.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|++++.||+|+||.||+|++..+|+.||||++....   ...+.+.+|+.+++.++|+||     +++++++.+.+.
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-----v~l~~~~~~~~~   88 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNI-----VKLFEVIETEKT   88 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEECSSE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEEECCE
Confidence            467999999999999999999999999999999997532   344567889999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus        89 ~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~---------------  151 (328)
T 3fe3_A           89 LYLIMEYASGGEVFDYLVAHG--RMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADM---------------  151 (328)
T ss_dssp             EEEEECCCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS---------------
T ss_pred             EEEEEECCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCC---------------
Confidence            99999999 999999998765  799999999999999999999999999999999999996655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCC-ccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~-~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                  .+||+|||++......  ....+||+.|+|||++.+..++ .++|||||||++|+|++|+.||.+.+.
T Consensus       152 ------------~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  219 (328)
T 3fe3_A          152 ------------NIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL  219 (328)
T ss_dssp             ------------CEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ------------CEEEeeccCceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH
Confidence                        5777778777644322  2346899999999999988875 899999999999999999999998877


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+....+......+|                                                  ...+.++.+||.+||
T Consensus       220 ~~~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~~li~~~L  249 (328)
T 3fe3_A          220 KELRERVLRGKYRIP--------------------------------------------------FYMSTDCENLLKRFL  249 (328)
T ss_dssp             HHHHHHHHHCCCCCC--------------------------------------------------TTSCHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCCCC--------------------------------------------------CCCCHHHHHHHHHHC
Confidence            766655544322222                                                  234678999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCCc
Q 013941          404 RYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      +.||++|||++|+++||||+...
T Consensus       250 ~~dP~~R~t~~eil~h~~~~~~~  272 (328)
T 3fe3_A          250 VLNPIKRGTLEQIMKDRWINAGH  272 (328)
T ss_dssp             CSSTTTSCCHHHHTTCTTTTTTC
T ss_pred             CCChhHCcCHHHHhcCHhhcCCC
Confidence            99999999999999999998643

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=7.3e-53  Score=404.80  Aligned_cols=262  Identities=27%  Similarity=0.467  Sum_probs=223.6

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-------hHHHHHHHHHHHHHHHhCCCCCcceeEec
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEIDVLQRLARHDIGGTRCVQIR  159 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~E~~~l~~l~~~~i~~~~~v~~~  159 (433)
                      ...+.++|++.+.||+|+||.||+|++..+|+.||+|++++...       ..+.+.+|+.+++.+.|+||     ++++
T Consensus         7 ~~~~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnI-----v~l~   81 (361)
T 2yab_A            7 QQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNI-----ITLH   81 (361)
T ss_dssp             CSCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTB-----CCEE
T ss_pred             CCChhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCC-----CcEE
Confidence            34567789999999999999999999999999999999975332       24678899999999988777     9999


Q ss_pred             ceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          160 NWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       160 ~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                      +++.+.+.+|+||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++.      
T Consensus        82 ~~~~~~~~~~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~------  153 (361)
T 2yab_A           82 DVYENRTDVVLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNI------  153 (361)
T ss_dssp             EEEECSSEEEEEEECCCSCBHHHHHTTCS--CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTS------
T ss_pred             EEEEeCCEEEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCC------
Confidence            9999999999999999 999999997654  7999999999999999999999999999999999999965441      


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                       ....+||+|||++......  ....+||+.|+|||++.+..++.++|||||||++|+|++|..
T Consensus       154 -----------------~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~  216 (361)
T 2yab_A          154 -----------------PIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGAS  216 (361)
T ss_dssp             -----------------SSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCC
T ss_pred             -----------------CccCEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCC
Confidence                             1236889999988765433  244689999999999999899999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+.+..+.+..+......++..                                              .+..++..++
T Consensus       217 Pf~~~~~~~~~~~i~~~~~~~~~~----------------------------------------------~~~~~s~~~~  250 (361)
T 2yab_A          217 PFLGDTKQETLANITAVSYDFDEE----------------------------------------------FFSQTSELAK  250 (361)
T ss_dssp             SSCCSSHHHHHHHHHTTCCCCCHH----------------------------------------------HHTTSCHHHH
T ss_pred             CCCCCCHHHHHHHHHhcCCCCCch----------------------------------------------hccCCCHHHH
Confidence            999988777766665443333221                                              1234577899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      +||.+||..||++|||++|+++||||+.
T Consensus       251 ~li~~~L~~dP~~R~t~~e~l~hp~~~~  278 (361)
T 2yab_A          251 DFIRKLLVKETRKRLTIQEALRHPWITP  278 (361)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHTSTTTSC
T ss_pred             HHHHHHCCCChhHCcCHHHHhcCcCcCC
Confidence            9999999999999999999999999985

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=6.8e-52  Score=398.03  Aligned_cols=336  Identities=45%  Similarity=0.852  Sum_probs=263.9

Q ss_pred             CCCCCceeeecCCccCCCeEEeccccccccEEEEEEEecCCC-cEEEEEEeccchhhHHHHHHHHHHHHHHHhCCC-CCc
Q 013941           76 DDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKK-ELVAIKIVRSINKYREAAMIEIDVLQRLARHDI-GGT  153 (433)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~-~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i-~~~  153 (433)
                      ++..+.+....|+.+.++|++.+.||+|+||.||+|.+..++ +.||+|+++......+.+.+|+.+++.+.|++. .+.
T Consensus         3 ~~~~~~~~~~~g~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~   82 (355)
T 2eu9_A            3 DDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKF   82 (355)
T ss_dssp             BCTTSCBCCCTTCEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCS
T ss_pred             cccCCCcccccCceecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCce
Confidence            456778888999999999999999999999999999998776 789999998766667788899999999998653 334


Q ss_pred             ceeEecceeccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcc
Q 013941          154 RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYV  233 (433)
Q Consensus       154 ~~v~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~  233 (433)
                      +++.+++++...+..|+||||++++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++..+..
T Consensus        83 ~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~  162 (355)
T 2eu9_A           83 LCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFE  162 (355)
T ss_dssp             CBCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEE
T ss_pred             eEEEeeeeeeeCCeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeccccc
Confidence            57889999999999999999998899998887665679999999999999999999999999999999999999765543


Q ss_pred             cccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh
Q 013941          234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       234 ~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  313 (433)
                      .+.+.....        ....+....+||+|||++...........||+.|+|||++.+..++.++|||||||++|||++
T Consensus       163 ~~~~~~~~~--------~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~  234 (355)
T 2eu9_A          163 TLYNEHKSC--------EEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYR  234 (355)
T ss_dssp             EEECCC-CC--------CEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccc--------cccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHh
Confidence            332221100        001134567999999999877666667789999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      |..||.+.+..+.+..+....+++|..+.......  .++. .....|+...........   ...............+.
T Consensus       235 g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  308 (355)
T 2eu9_A          235 GFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQ--KYFY-KGGLVWDENSSDGRYVKE---NCKPLKSYMLQDSLEHV  308 (355)
T ss_dssp             SSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCG--GGEE-TTEECCCTTSHHHHHHHH---HCCCGGGGCSCCSHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccch--hhhc-ccccccccccchhccccc---cCCcccccccccchhHH
Confidence            99999999999999999999999998776554321  1111 112334433222211111   11111111111223366


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ++.+||.+||+.||++|||+.|+++||||++.
T Consensus       309 ~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  340 (355)
T 2eu9_A          309 QLFDLMRRMLEFDPAQRITLAEALLHPFFAGL  340 (355)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGC
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHhcChhhcCC
Confidence            89999999999999999999999999999974

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=2.2e-52  Score=414.81  Aligned_cols=304  Identities=26%  Similarity=0.444  Sum_probs=231.3

Q ss_pred             CCCceeeecCC---ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCC
Q 013941           78 KDGHYVFAIGE---NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIG  151 (433)
Q Consensus        78 ~~~~~~~~~~~---~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~  151 (433)
                      ..+.|.+..++   .+.++|++++.||+|+||+||+|++..+++.||||++...   ......+.+|+.+++.++|+|| 
T Consensus        45 ~~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-  123 (464)
T 3ttj_A           45 DNQFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI-  123 (464)
T ss_dssp             -CCEEEEEC--CEEEEETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTB-
T ss_pred             cccceeeecCCcceeecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCC-
Confidence            45567777776   4568999999999999999999999999999999999753   3345667889999999988877 


Q ss_pred             CcceeEecceeccC------CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcE
Q 013941          152 GTRCVQIRNWFDYR------NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENI  225 (433)
Q Consensus       152 ~~~~v~~~~~~~~~------~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NI  225 (433)
                          +++++++...      ..+|+||||++++|.+.+..    .+++..++.++.||+.||+|||++||+||||||+||
T Consensus       124 ----v~l~~~~~~~~~~~~~~~~~lv~E~~~~~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NI  195 (464)
T 3ttj_A          124 ----ISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNI  195 (464)
T ss_dssp             ----CCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGE
T ss_pred             ----CcEEEEEccCCccccCCeEEEEEeCCCCCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhE
Confidence                9999988543      57899999997788888753    489999999999999999999999999999999999


Q ss_pred             EEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHH
Q 013941          226 LLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWS  303 (433)
Q Consensus       226 li~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwS  303 (433)
                      |++.++                           .+||+|||++......  ....+||+.|+|||++.+..|+.++||||
T Consensus       196 ll~~~~---------------------------~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS  248 (464)
T 3ttj_A          196 VVKSDC---------------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWS  248 (464)
T ss_dssp             EECTTS---------------------------CEEECCCCCC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHH
T ss_pred             EEeCCC---------------------------CEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHH
Confidence            997655                           5777778877654432  24468999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhh
Q 013941          304 VGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL  383 (433)
Q Consensus       304 lG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (433)
                      |||++|||++|+.||.+.+..+++..+.+.+|.++..++.........+........  . .    .....+..... ..
T Consensus       249 lG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~--~-~----~~~~~~~~~~~-~~  320 (464)
T 3ttj_A          249 VGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYA--G-L----TFPKLFPDSLF-PA  320 (464)
T ss_dssp             HHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCC--C-C----CHHHHSCGGGS-CC
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccC--C-C----ChHHhCccccc-cc
Confidence            999999999999999999999999999999998887776655444444433221100  0 0    00000000000 00


Q ss_pred             hhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       384 ~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ........+.++++||.+||++||++|||++|+|+||||+..
T Consensus       321 ~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~~  362 (464)
T 3ttj_A          321 DSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVW  362 (464)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGG
T ss_pred             ccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChhhhhc
Confidence            000011126689999999999999999999999999999853

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-52  Score=398.09  Aligned_cols=263  Identities=24%  Similarity=0.415  Sum_probs=225.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+.++|++.+.||+|+||.||+|.+..+++.||+|++.........+.+|+.+++.+.|+||     +++++++.+.+.+
T Consensus         2 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnI-----v~~~~~~~~~~~~   76 (321)
T 1tki_A            2 ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNI-----LHLHESFESMEEL   76 (321)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTB-----CCEEEEEEETTEE
T ss_pred             chhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCC-----CeEeEEEecCCEE
Confidence            45678999999999999999999999999999999998666666778899999999988877     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||| +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.+                 
T Consensus        77 ~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~-----------------  138 (321)
T 1tki_A           77 VMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTR-----------------  138 (321)
T ss_dssp             EEEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSS-----------------
T ss_pred             EEEEEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccC-----------------
Confidence            9999999 889999997543 369999999999999999999999999999999999999652                 


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                              .+..+||+|||++.......  ....||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+
T Consensus       139 --------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~  210 (321)
T 1tki_A          139 --------RSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ  210 (321)
T ss_dssp             --------SCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             --------CCCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH
Confidence                    13468999999887654332  33579999999999999889999999999999999999999999888877


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+......++..                                              ....++.++.+||.+||+.
T Consensus       211 ~~~~i~~~~~~~~~~----------------------------------------------~~~~~s~~~~~li~~~L~~  244 (321)
T 1tki_A          211 IIENIMNAEYTFDEE----------------------------------------------AFKEISIEAMDFVDRLLVK  244 (321)
T ss_dssp             HHHHHHHTCCCCCHH----------------------------------------------HHTTSCHHHHHHHHTTSCS
T ss_pred             HHHHHHcCCCCCChh----------------------------------------------hhccCCHHHHHHHHHHcCC
Confidence            776665543332211                                              1234577999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCccc
Q 013941          406 DPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      ||++|||+.|+|+||||++...+
T Consensus       245 dp~~Rpt~~e~l~hp~~~~~~~~  267 (321)
T 1tki_A          245 ERKSRMTASEALQHPWLKQKIER  267 (321)
T ss_dssp             SGGGSCCHHHHHHSHHHHSCGGG
T ss_pred             ChhHCcCHHHHhcChhhccCccc
Confidence            99999999999999999986543

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=2e-52  Score=394.73  Aligned_cols=286  Identities=30%  Similarity=0.465  Sum_probs=225.3

Q ss_pred             cCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           86 IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        86 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      .++.+.++|+++++||+|+||+||+|++. +++.||+|++....   .....+.+|+.++++++|+||     +++++++
T Consensus        15 ~~q~l~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~   88 (311)
T 3niz_A           15 YFQGLMEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNI-----VSLIDVI   88 (311)
T ss_dssp             CEECSSCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTB-----CCEEEEE
T ss_pred             eecchHhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCE-----eeeeeEE
Confidence            45677889999999999999999999985 58899999987432   234667899999999988877     9999999


Q ss_pred             ccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          163 DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       163 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      .+++.+++||||+.++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++           
T Consensus        89 ~~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~-----------  156 (311)
T 3niz_A           89 HSERCLTLVFEFMEKDLKKVLDENK-TGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDG-----------  156 (311)
T ss_dssp             CCSSCEEEEEECCSEEHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC-----------
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCC-----------
Confidence            9999999999999879999987654 4699999999999999999999999999999999999997655           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                      .+||+|||++......   .....||+.|+|||++.+ ..++.++|||||||++|+|++|+.||
T Consensus       157 ----------------~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf  220 (311)
T 3niz_A          157 ----------------ALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLF  220 (311)
T ss_dssp             ----------------CEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ----------------CEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCC
Confidence                            5677777777654322   233578999999999987 46899999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+....+.+..+....+..+...+........ +....  ....                 ...........++.++.+|
T Consensus       221 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~l  280 (311)
T 3niz_A          221 PGVTDDDQLPKIFSILGTPNPREWPQVQELPL-WKQRT--FQVF-----------------EKKPWSSIIPGFCQEGIDL  280 (311)
T ss_dssp             CCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHH-HHSCC--CCCC-----------------CCCCHHHHSTTCCHHHHHH
T ss_pred             CCCChHHHHHHHHHHHCCCChHHhhhhhccch-hhhcc--cccc-----------------cCCcHHHhCcccCHHHHHH
Confidence            99888888888888877665433222111100 00000  0000                 0000112234567899999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |.+||++||++|||++|+|+||||++-
T Consensus       281 i~~~L~~dP~~Rpt~~ell~hp~f~~~  307 (311)
T 3niz_A          281 LSNMLCFDPNKRISARDAMNHPYFKDL  307 (311)
T ss_dssp             HHHHSCSCTTTSCCHHHHHTSGGGTTS
T ss_pred             HHHHcCCChhHCCCHHHHhcCcccccC
Confidence            999999999999999999999999974

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=7.8e-53  Score=403.58  Aligned_cols=250  Identities=24%  Similarity=0.402  Sum_probs=211.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++++.||+|+||.||+|++..+++.||||++++.    ....+...+|..++..+ .|++|     +++++++.+.+
T Consensus        23 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~I-----v~l~~~~~~~~   97 (353)
T 3txo_A           23 DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFL-----TQLFCCFQTPD   97 (353)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTB-----CCEEEEEECSS
T ss_pred             hheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCce-----eeEEEEEEeCC
Confidence            6799999999999999999999999999999999753    23345677899999887 46666     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|              
T Consensus        98 ~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g--------------  161 (353)
T 3txo_A           98 RLFFVMEFVNGGDLMFHIQKSR--RFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEG--------------  161 (353)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS--------------
T ss_pred             EEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCC--------------
Confidence            999999999 899999998765  799999999999999999999999999999999999997665              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   .+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+
T Consensus       162 -------------~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~  228 (353)
T 3txo_A          162 -------------HCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN  228 (353)
T ss_dssp             -------------CEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             -------------CEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC
Confidence                         46777777765422   22334689999999999998889999999999999999999999999988


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+....+......+|                                                  ..++.++.+||.+|
T Consensus       229 ~~~~~~~i~~~~~~~p--------------------------------------------------~~~~~~~~~li~~l  258 (353)
T 3txo_A          229 EDDLFEAILNDEVVYP--------------------------------------------------TWLHEDATGILKSF  258 (353)
T ss_dssp             HHHHHHHHHHCCCCCC--------------------------------------------------TTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCC--------------------------------------------------CCCCHHHHHHHHHH
Confidence            8777766655322222                                                  23467899999999


Q ss_pred             cccCCCCCCCH------HHHhcCCCCCCC
Q 013941          403 LRYDPAERLKA------REALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~ta------~ell~hp~f~~~  425 (433)
                      |+.||++|+++      +|+++||||++.
T Consensus       259 L~~dP~~R~~~~~~~~~~~il~hp~f~~~  287 (353)
T 3txo_A          259 MTKNPTMRLGSLTQGGEHAILRHPFFKEI  287 (353)
T ss_dssp             TCSSGGGSTTSGGGTCTHHHHTSGGGTTC
T ss_pred             hhhCHHHccCCcccCCHHHHhhCCcccCC
Confidence            99999999998      899999999863

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-52  Score=394.45  Aligned_cols=250  Identities=26%  Similarity=0.425  Sum_probs=216.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||.||+|++..+|+.||+|++++..    ...+.+.+|+.+++.+.|++|     +++++++.+.+.
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~I-----v~~~~~~~~~~~   80 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFI-----IRMWGTFQDAQQ   80 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTB-----CCEEEEEECSSE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCC-----ceEeEEEEeCCE
Confidence            56999999999999999999999999999999997532    234567789999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|               
T Consensus        81 ~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g---------------  143 (318)
T 1fot_A           81 IFMIMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNG---------------  143 (318)
T ss_dssp             EEEEECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTS---------------
T ss_pred             EEEEEeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCC---------------
Confidence            99999999 899999998764  799999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  .+||+|||++..........+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+....
T Consensus       144 ------------~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~  211 (318)
T 1fot_A          144 ------------HIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKT  211 (318)
T ss_dssp             ------------CEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH
T ss_pred             ------------CEEEeecCcceecCCccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHH
Confidence                        57778888777665555567899999999999999999999999999999999999999998877666


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+......+|                                                  ...+.++.+||.+||+.|
T Consensus       212 ~~~i~~~~~~~p--------------------------------------------------~~~~~~~~~li~~lL~~d  241 (318)
T 1fot_A          212 YEKILNAELRFP--------------------------------------------------PFFNEDVKDLLSRLITRD  241 (318)
T ss_dssp             HHHHHHCCCCCC--------------------------------------------------TTSCHHHHHHHHHHTCSC
T ss_pred             HHHHHhCCCCCC--------------------------------------------------CCCCHHHHHHHHHHhccC
Confidence            655544221111                                                  234678999999999999


Q ss_pred             CCCCC-----CHHHHhcCCCCCCC
Q 013941          407 PAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       407 P~~R~-----ta~ell~hp~f~~~  425 (433)
                      |++|+     +++|+++||||++.
T Consensus       242 p~~R~~~~~~~~~~i~~hp~f~~~  265 (318)
T 1fot_A          242 LSQRLGNLQNGTEDVKNHPWFKEV  265 (318)
T ss_dssp             TTTCTTSSTTTTHHHHTSGGGSSC
T ss_pred             HHHcCCCcCCCHHHHhcCccccCC
Confidence            99999     99999999999863

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=3.4e-52  Score=396.61  Aligned_cols=250  Identities=25%  Similarity=0.416  Sum_probs=212.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||.||+|++..+++.||||++++..    .......+|+.+++.++|+++     +++++++.+.+.
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~l~~~~~~~~~   79 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFL-----TALKYAFQTHDR   79 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTB-----CCEEEEEECSSE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcC-----cceEEEEEeCCE
Confidence            57999999999999999999999999999999997532    334567889999998888776     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|               
T Consensus        80 ~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g---------------  142 (337)
T 1o6l_A           80 LCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDG---------------  142 (337)
T ss_dssp             EEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS---------------
T ss_pred             EEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCC---------------
Confidence            99999999 899999998764  799999999999999999999999999999999999997666               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                  .+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+.
T Consensus       143 ------------~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~  210 (337)
T 1o6l_A          143 ------------HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  210 (337)
T ss_dssp             ------------CEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ------------CEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH
Confidence                        46666666665422   122346899999999999999999999999999999999999999988776


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+......+                                                  ...++.++.+||.+||
T Consensus       211 ~~~~~~i~~~~~~~--------------------------------------------------p~~~s~~~~~li~~lL  240 (337)
T 1o6l_A          211 ERLFELILMEEIRF--------------------------------------------------PRTLSPEAKSLLAGLL  240 (337)
T ss_dssp             HHHHHHHHHCCCCC--------------------------------------------------CTTSCHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCC--------------------------------------------------CCCCCHHHHHHHHHHh
Confidence            66555544321111                                                  1245778999999999


Q ss_pred             ccCCCCCC-----CHHHHhcCCCCCCC
Q 013941          404 RYDPAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~-----ta~ell~hp~f~~~  425 (433)
                      +.||++||     +++|+++||||++.
T Consensus       241 ~~dP~~R~g~~~~~~~ei~~h~~f~~~  267 (337)
T 1o6l_A          241 KKDPKQRLGGGPSDAKEVMEHRFFLSI  267 (337)
T ss_dssp             CSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             hcCHHHhcCCCCCCHHHHHcCCCcCCC
Confidence            99999999     99999999999863

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=6.2e-52  Score=412.21  Aligned_cols=310  Identities=28%  Similarity=0.460  Sum_probs=216.2

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec--
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD--  163 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~--  163 (433)
                      .+.++|++++.||+|+||+||+|++..+++.||||++...   ....+.+.+|+.+++.++|+||     +++++++.  
T Consensus        50 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~l~~~~~~~  124 (458)
T 3rp9_A           50 QIPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHV-----VKVLDIVIPK  124 (458)
T ss_dssp             CSCTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTB-----CCEEEECCCS
T ss_pred             ccCCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCC-----CceEEEEecC
Confidence            4567899999999999999999999999999999998642   2344667899999999988877     99999883  


Q ss_pred             ---cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          164 ---YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       164 ---~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                         ..+.+|+||||++++|.+++....  .+++..++.++.||+.||+|||++|||||||||+|||++.++.+||+|||+
T Consensus       125 ~~~~~~~~~lv~e~~~~~L~~~~~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGl  202 (458)
T 3rp9_A          125 DVEKFDELYVVLEIADSDFKKLFRTPV--YLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGL  202 (458)
T ss_dssp             CTTTCCCEEEEECCCSEEHHHHHHSSC--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTT
T ss_pred             CcccCceEEEEEeccccchhhhcccCC--CCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeeccccc
Confidence               346799999999999999998654  799999999999999999999999999999999999999999999999998


Q ss_pred             cccCCCCCCcccCC---CCCCCeeeecCCCCccccCCCcccccCCcccchhhhh-CCCCCccchHHHHHHHHHHHHh---
Q 013941          241 LSRSSKDGSYFKNL---PKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCS---  313 (433)
Q Consensus       241 ~~~~~~~~~~~~~~---~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlG~il~el~~---  313 (433)
                      +.............   .......+.+|+............+||+.|+|||++. +..++.++|||||||++|||++   
T Consensus       203 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~  282 (458)
T 3rp9_A          203 ARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIK  282 (458)
T ss_dssp             CBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTST
T ss_pred             chhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhcc
Confidence            87664432211110   1112234455554444334445568999999999874 5579999999999999999998   


Q ss_pred             --------CCCCCCCCC--------------------hHHHHHHHHHHhcCCChhhHHhhhhhh-hhhhcCCccccCCCC
Q 013941          314 --------GEALFQTHE--------------------NLEHLAMMERVLGPLPHHMVIRADRRA-EKYFRRGARLDWPDG  364 (433)
Q Consensus       314 --------g~~pf~~~~--------------------~~~~~~~i~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~  364 (433)
                              |.++|.+..                    ..+++..|...+|.++...+....... ..+....     +. 
T Consensus       283 ~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~-----~~-  356 (458)
T 3rp9_A          283 ENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIF-----PK-  356 (458)
T ss_dssp             TTCSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTS-----CC-
T ss_pred             ccccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhc-----CC-
Confidence                    777786654                    356778888888888876554332111 1111100     00 


Q ss_pred             CCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          365 ATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                                    .............+.++.+||.+||++||++|||++|+|+||||++.
T Consensus       357 --------------~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~  403 (458)
T 3rp9_A          357 --------------REGTDLAERFPASSADAIHLLKRMLVFNPNKRITINECLAHPFFKEV  403 (458)
T ss_dssp             --------------CCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTT
T ss_pred             --------------CCCCCHHHHCCCCCHHHHHHHHHHhccCccccCCHHHHhcCHhhhhc
Confidence                          00011122234567899999999999999999999999999999975

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.5e-52  Score=400.45  Aligned_cols=282  Identities=28%  Similarity=0.513  Sum_probs=225.2

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.++|++++.||+|+||.||+|.+..+|+.||||++...   ....+.+.+|+.+++.++|+||     +++++++...
T Consensus        22 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-----v~l~~~~~~~   96 (367)
T 1cm8_A           22 EVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENV-----IGLLDVFTPD   96 (367)
T ss_dssp             CCBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTB-----CCCSEEECSC
T ss_pred             eecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCC-----CCceeeEecC
Confidence            3457899999999999999999999999999999998542   2345667899999999998887     9999988765


Q ss_pred             ------CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          166 ------NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       166 ------~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                            ..+|+||||++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++        
T Consensus        97 ~~~~~~~~~~lv~e~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~--------  165 (367)
T 1cm8_A           97 ETLDDFTDFYLVMPFMGTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDC--------  165 (367)
T ss_dssp             SSTTTCCCCEEEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC--------
T ss_pred             CccccCceEEEEEecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCC--------
Confidence                  356999999999999999874   599999999999999999999999999999999999996554        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                         .+||+|||++..........+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||
T Consensus       166 -------------------~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  226 (367)
T 1cm8_A          166 -------------------ELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLF  226 (367)
T ss_dssp             -------------------CEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             -------------------CEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCC
Confidence                               5788888888766555556789999999999987 67999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhh-hhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRR-AEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      .+.+..+++..+.+..+.+|..+....... ...+...-     +.               .............++.+.+
T Consensus       227 ~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~  286 (367)
T 1cm8_A          227 KGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGL-----PE---------------LEKKDFASILTNASPLAVN  286 (367)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHS-----CC---------------CCCCCGGGTCTTCCHHHHH
T ss_pred             CCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhC-----CC---------------CCCCCHHHHCCCCCHHHHH
Confidence            999999999999999999887665433211 11111000     00               0000011223456789999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||.+||+.||++|||++|+|+||||++.
T Consensus       287 ll~~mL~~dP~~R~t~~e~l~hp~f~~~  314 (367)
T 1cm8_A          287 LLEKMLVLDAEQRVTAGEALAHPYFESL  314 (367)
T ss_dssp             HHHHHSCSSTTTSCCHHHHHHSGGGTTT
T ss_pred             HHHHHccCChhHCCCHHHHhcChHHHhh
Confidence            9999999999999999999999999874

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3e-53  Score=397.30  Aligned_cols=193  Identities=22%  Similarity=0.264  Sum_probs=156.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC----
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN----  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~----  166 (433)
                      ..+|.+.++||+|+||+||+|++  +|+.||||+++...........|+..+.+++|+||     |++++++.+++    
T Consensus         2 ar~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNI-----v~l~g~~~~~~~~~~   74 (303)
T 3hmm_A            2 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENI-----LGFIAADNKDNGTWT   74 (303)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTB-----CCEEEEEEEECSSSE
T ss_pred             CcEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCC-----CcEEEEEEecCCCce
Confidence            35699999999999999999986  58899999997654433334456666667777776     99999987643    


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC--------CcEecCCCCCcEEEeeCCcccccC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL--------RLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~--------~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      .+||||||| +|+|.+++...   .++++.+..++.|++.||+|||++        +||||||||+|||++.++      
T Consensus        75 ~~~lV~Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~------  145 (303)
T 3hmm_A           75 QLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG------  145 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTS------
T ss_pred             EEEEEecCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCC------
Confidence            689999999 99999999875   599999999999999999999987        999999999999997665      


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-------cccccCCcccchhhhhCC------CCCccchHHHH
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-------SYVVSTRHYRAPEVILGL------GWNYPCDLWSV  304 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~gt~~y~aPE~~~~~------~~~~~~DiwSl  304 (433)
                                           .+||+|||+|+......       ...+||+.|||||++.+.      .++.++|||||
T Consensus       146 ---------------------~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~  204 (303)
T 3hmm_A          146 ---------------------TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAM  204 (303)
T ss_dssp             ---------------------CEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHH
T ss_pred             ---------------------CEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhH
Confidence                                 46777777765433221       235899999999999764      36789999999


Q ss_pred             HHHHHHHHhCCCCCCC
Q 013941          305 GCILVELCSGEALFQT  320 (433)
Q Consensus       305 G~il~el~~g~~pf~~  320 (433)
                      ||+||||+||..||..
T Consensus       205 Gvvl~El~tg~~~~~~  220 (303)
T 3hmm_A          205 GLVFWEIARRCSIGGI  220 (303)
T ss_dssp             HHHHHHHHHTBCBTTB
T ss_pred             HHHHHHHHHCCCCCCc
Confidence            9999999999888754

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=6.1e-52  Score=408.57  Aligned_cols=261  Identities=25%  Similarity=0.425  Sum_probs=221.9

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..+.++|++.+.||+|+||+||+|.+..+|+.||+|++....   ...+.+.+|+.+++.++|+||     +++++++.+
T Consensus         7 ~~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnI-----v~l~~~~~~   81 (444)
T 3soa_A            7 TRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNI-----VRLHDSISE   81 (444)
T ss_dssp             CHHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTB-----CCEEEEEEC
T ss_pred             ccccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCC-----CeEEEEEEE
Confidence            455678999999999999999999999999999999987532   344567899999999998887     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      .+..|+||||| +++|.+.+....  .+++..+..++.||+.||.|||++||+||||||+|||++.+.            
T Consensus        82 ~~~~~lv~E~~~gg~L~~~i~~~~--~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~------------  147 (444)
T 3soa_A           82 EGHHYLIFDLVTGGELFEDIVARE--YYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKL------------  147 (444)
T ss_dssp             SSEEEEEECCCBCCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSS------------
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccC------------
Confidence            99999999999 999999998765  799999999999999999999999999999999999997532            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                  ....+||+|||++.......   ....||+.|+|||++.+..++.++|||||||++|+|++|..||.+
T Consensus       148 ------------~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~  215 (444)
T 3soa_A          148 ------------KGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWD  215 (444)
T ss_dssp             ------------TTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             ------------CCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCC
Confidence                        34568999999887654332   335899999999999998999999999999999999999999998


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+.......+......+|.                                              .....+++++.+||.
T Consensus       216 ~~~~~~~~~i~~~~~~~~~----------------------------------------------~~~~~~s~~~~~li~  249 (444)
T 3soa_A          216 EDQHRLYQQIKAGAYDFPS----------------------------------------------PEWDTVTPEAKDLIN  249 (444)
T ss_dssp             SSHHHHHHHHHHTCCCCCT----------------------------------------------TTTTTSCHHHHHHHH
T ss_pred             ccHHHHHHHHHhCCCCCCc----------------------------------------------cccccCCHHHHHHHH
Confidence            8877777666554333221                                              112345779999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||+.||++|||+.|+|+||||++.
T Consensus       250 ~~L~~dP~~Rpta~e~L~hp~~~~~  274 (444)
T 3soa_A          250 KMLTINPSKRITAAEALKHPWISHR  274 (444)
T ss_dssp             HHSCSSTTTSCCHHHHHHSCTTHHH
T ss_pred             HHcCCChhHCCCHHHHhcCccccCC
Confidence            9999999999999999999999754

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.1e-51  Score=392.20  Aligned_cols=262  Identities=26%  Similarity=0.469  Sum_probs=222.6

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-------hHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      +.+.++|++.+.||+|+||.||+|++..+++.||+|++.....       ..+.+.+|+.+++.++|+|+     +++++
T Consensus         7 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~   81 (326)
T 2y0a_A            7 ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNV-----ITLHE   81 (326)
T ss_dssp             SCHHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTB-----CCEEE
T ss_pred             CCcccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCC-----CcEEE
Confidence            4456789999999999999999999999999999999875321       35678899999999988877     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      ++.+.+.+++||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++.       
T Consensus        82 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~-------  152 (326)
T 2y0a_A           82 VYENKTDVILILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNV-------  152 (326)
T ss_dssp             EEECSSEEEEEEECCCSCBHHHHHTTSS--CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSS-------
T ss_pred             EEEeCCEEEEEEEcCCCCCHHHHHHhcC--CcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCC-------
Confidence            999999999999999 999999997654  7999999999999999999999999999999999999976541       


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                      ....+||+|||++.....  ......||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       153 ----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~p  216 (326)
T 2y0a_A          153 ----------------PKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP  216 (326)
T ss_dssp             ----------------SSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCS
T ss_pred             ----------------CCCCEEEEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCC
Confidence                            233688999998876542  23346899999999999998999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+....+.+..+......++..                                              .....+..+.+
T Consensus       217 f~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~  250 (326)
T 2y0a_A          217 FLGDTKQETLANVSAVNYEFEDE----------------------------------------------YFSNTSALAKD  250 (326)
T ss_dssp             SCCSSHHHHHHHHHHTCCCCCHH----------------------------------------------HHTTSCHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCcCcc----------------------------------------------ccccCCHHHHH
Confidence            99887777666655443332211                                              12345678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||.+||+.||++|||++|+|+||||+..
T Consensus       251 li~~~L~~dP~~Rpt~~e~l~hp~~~~~  278 (326)
T 2y0a_A          251 FIRRLLVKDPKKRMTIQDSLQHPWIKPK  278 (326)
T ss_dssp             HHHHHSCSSGGGSCCHHHHHHSTTTSCC
T ss_pred             HHHHHccCChhhCCCHHHHhcCCCccCC
Confidence            9999999999999999999999999864

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=5.5e-51  Score=394.62  Aligned_cols=319  Identities=30%  Similarity=0.521  Sum_probs=243.5

Q ss_pred             CceeeecCCcc-CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCC------CC
Q 013941           80 GHYVFAIGENL-TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI------GG  152 (433)
Q Consensus        80 ~~~~~~~~~~~-~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i------~~  152 (433)
                      ++++...++.+ .++|++.+.||+|+||.||+|++..+++.||||++.......+.+.+|+.+++++.+...      .|
T Consensus         6 ~~~p~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~   85 (373)
T 1q8y_A            6 GYHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGA   85 (373)
T ss_dssp             -CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             CceeeecCCcccCCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhcccc
Confidence            34455555655 368999999999999999999999999999999998766667788899999999985432      24


Q ss_pred             cceeEecceeccCC----eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEE
Q 013941          153 TRCVQIRNWFDYRN----HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILL  227 (433)
Q Consensus       153 ~~~v~~~~~~~~~~----~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli  227 (433)
                      +|++++++++...+    .+++|||+++++|.+++.......+++..++.++.||+.||+|||++ ||+||||||+|||+
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll  165 (373)
T 1q8y_A           86 NHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLM  165 (373)
T ss_dssp             TTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEE
T ss_pred             chHHHHHHHhhccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEE
Confidence            55699999987644    89999999999999999876656799999999999999999999998 99999999999999


Q ss_pred             eeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHH
Q 013941          228 VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCI  307 (433)
Q Consensus       228 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~i  307 (433)
                      +.++.                     .+....+||+|||++...........||+.|+|||++.+..++.++|||||||+
T Consensus       166 ~~~~~---------------------~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~i  224 (373)
T 1q8y_A          166 EIVDS---------------------PENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACL  224 (373)
T ss_dssp             EEEET---------------------TTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHH
T ss_pred             eccCC---------------------CcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHH
Confidence            76441                     023346899999999877666666789999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCC------hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCch
Q 013941          308 LVELCSGEALFQTHE------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP  381 (433)
Q Consensus       308 l~el~~g~~pf~~~~------~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (433)
                      +|+|++|..||.+..      ....+..+...++.+|..++.........+...+............  ......     
T Consensus       225 l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----  297 (373)
T 1q8y_A          225 IFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWP--LEDVLT-----  297 (373)
T ss_dssp             HHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCC--HHHHHH-----
T ss_pred             HHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccc--hhhhhh-----
Confidence            999999999998654      5567788888899999877654432222211111111111111110  000000     


Q ss_pred             hhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       382 ~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                       .........+.++.+||.+||+.||++|||++|+|+||||++...
T Consensus       298 -~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  342 (373)
T 1q8y_A          298 -EKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLG  342 (373)
T ss_dssp             -HTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTT
T ss_pred             -hcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhcccC
Confidence             001112334678999999999999999999999999999998643

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=4.6e-52  Score=400.07  Aligned_cols=267  Identities=24%  Similarity=0.411  Sum_probs=223.2

Q ss_pred             eeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEe
Q 013941           82 YVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQI  158 (433)
Q Consensus        82 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~  158 (433)
                      +....+..+.++|++.+.||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+.+++.++|+||     +++
T Consensus        19 ~~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnI-----v~~   93 (362)
T 2bdw_A           19 FMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNI-----VRL   93 (362)
T ss_dssp             -----CCHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTB-----CCE
T ss_pred             EeecCCCCcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCC-----CeE
Confidence            334445666788999999999999999999999999999999997532   344667889999999988877     999


Q ss_pred             cceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       159 ~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      ++++.+.+..|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++      
T Consensus        94 ~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~------  165 (362)
T 2bdw_A           94 HDSIQEESFHYLVFDLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKA------  165 (362)
T ss_dssp             EEEEECSSEEEEEECCCCSCBHHHHHTTCS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSS------
T ss_pred             EEEEEeCCEEEEEEecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCC------
Confidence            99999999999999999 899999997654  799999999999999999999999999999999999997643      


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCC
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                        ....+||+|||++.......  ....||+.|+|||++.+..++.++|||||||++|+|++|.
T Consensus       166 ------------------~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~  227 (362)
T 2bdw_A          166 ------------------KGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGY  227 (362)
T ss_dssp             ------------------TTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------CCCCEEEeecCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCC
Confidence                              23468999999887654332  3468999999999999989999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||.+.+.......+......+|.                                              ..+..++.++
T Consensus       228 ~Pf~~~~~~~~~~~i~~~~~~~~~----------------------------------------------~~~~~~~~~~  261 (362)
T 2bdw_A          228 PPFWDEDQHRLYAQIKAGAYDYPS----------------------------------------------PEWDTVTPEA  261 (362)
T ss_dssp             CSSCCSSHHHHHHHHHHTCCCCCT----------------------------------------------TGGGGSCHHH
T ss_pred             CCCCCCCHHHHHHHHHhCCCCCCc----------------------------------------------ccccCCCHHH
Confidence            999988777666665543322221                                              0113456789


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .+||.+||+.||++|||+.|+|+||||+..
T Consensus       262 ~~li~~~L~~dP~~R~t~~e~l~hp~~~~~  291 (362)
T 2bdw_A          262 KSLIDSMLTVNPKKRITADQALKVPWICNR  291 (362)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHTTSHHHHTH
T ss_pred             HHHHHHHcCCChhhCcCHHHHhcCcccCCC
Confidence            999999999999999999999999999753

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=5.7e-52  Score=396.15  Aligned_cols=251  Identities=25%  Similarity=0.393  Sum_probs=213.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .++|++.+.||+|+||.||+|+++.+++.||||++++..    ...+....|..++..+ .|++|     +++++++.+.
T Consensus        16 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~i-----v~l~~~~~~~   90 (345)
T 1xjd_A           16 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFL-----THMFCTFQTK   90 (345)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTB-----CCEEEEEECS
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCC-----CcEEEEEEeC
Confidence            357999999999999999999999999999999997532    3345677899999887 67766     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +.+|+||||+ |++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|             
T Consensus        91 ~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g-------------  155 (345)
T 1xjd_A           91 ENLFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDG-------------  155 (345)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS-------------
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCC-------------
Confidence            9999999999 999999998764  699999999999999999999999999999999999997665             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                    .+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.
T Consensus       156 --------------~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (345)
T 1xjd_A          156 --------------HIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  221 (345)
T ss_dssp             --------------CEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             --------------CEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC
Confidence                          46667777665422   2234468999999999999999999999999999999999999999988


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +.......+......+|                                                  ..++.++.+||.+
T Consensus       222 ~~~~~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~~li~~  251 (345)
T 1xjd_A          222 DEEELFHSIRMDNPFYP--------------------------------------------------RWLEKEAKDLLVK  251 (345)
T ss_dssp             SHHHHHHHHHHCCCCCC--------------------------------------------------TTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCC--------------------------------------------------cccCHHHHHHHHH
Confidence            77666655543221111                                                  2346789999999


Q ss_pred             hcccCCCCCCCHH-HHhcCCCCCCC
Q 013941          402 LLRYDPAERLKAR-EALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP~~R~ta~-ell~hp~f~~~  425 (433)
                      ||+.||++||++. ++++||||++.
T Consensus       252 lL~~dp~~R~~~~~~i~~hp~f~~~  276 (345)
T 1xjd_A          252 LFVREPEKRLGVRGDIRQHPLFREI  276 (345)
T ss_dssp             HSCSSGGGSBTTBSCGGGSGGGTTC
T ss_pred             HhcCCHhHcCCChHHHHcCccccCC
Confidence            9999999999998 99999999864

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.3e-51  Score=385.64  Aligned_cols=280  Identities=29%  Similarity=0.483  Sum_probs=221.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|+++++||+|+||+||+|++..+++.||||++....   .....+.+|+.++++++|+|+     +++++++.+++.+
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~   76 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI-----VRLHDVLHSDKKL   76 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTB-----CCEEEEEEETTEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCE-----eeEEeEEEeCCEE
Confidence            47999999999999999999999999999999997432   334677889999999988777     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++||||++++|.+.+.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++                 
T Consensus        77 ~lv~e~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~-----------------  138 (292)
T 3o0g_A           77 TLVFEFCDQDLKKYFDSCN-GDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNG-----------------  138 (292)
T ss_dssp             EEEEECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS-----------------
T ss_pred             EEEEecCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCC-----------------
Confidence            9999999778888776543 4799999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCC-CCccchHHHHHHHHHHHHhCCCC-CCCCCh
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEAL-FQTHEN  323 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~el~~g~~p-f~~~~~  323 (433)
                                .+||+|||++......   .....||+.|+|||++.+.. ++.++|||||||++|+|++|..| |.+.+.
T Consensus       139 ----------~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~  208 (292)
T 3o0g_A          139 ----------ELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV  208 (292)
T ss_dssp             ----------CEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSH
T ss_pred             ----------CEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCH
Confidence                      5677777777654322   23357899999999998765 89999999999999999987766 667777


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+.+..+.+..+.++...+........       ...++..              .............+.++++||.+||
T Consensus       209 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------------~~~~~~~~~~~~~~~~~~~li~~~L  267 (292)
T 3o0g_A          209 DDQLKRIFRLLGTPTEEQWPSMTKLPD-------YKPYPMY--------------PATTSLVNVVPKLNATGRDLLQNLL  267 (292)
T ss_dssp             HHHHHHHHHHHCCCCTTTCTTGGGSTT-------CCCCCCC--------------CTTCCCTTTSTTCCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCChhhhhhhccccc-------ccccccc--------------cCCcchhhcccccChHHHHHHHHHh
Confidence            778888888877766543222111000       0000000              0000111223456789999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCC
Q 013941          404 RYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +.||++|||++|+++||||++.
T Consensus       268 ~~dP~~R~t~~e~l~hp~f~~~  289 (292)
T 3o0g_A          268 KCNPVQRISAEEALQHPYFSDF  289 (292)
T ss_dssp             CSSGGGSCCHHHHHTSGGGTTC
T ss_pred             ccChhhCCCHHHHhcCcccccC
Confidence            9999999999999999999974

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=7e-52  Score=396.69  Aligned_cols=249  Identities=27%  Similarity=0.437  Sum_probs=217.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||.||+|++..+++.||||++.+..    ...+.+.+|+.+++.+.|++|     +++++++.+.+.
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~~~~  115 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFL-----VKLEFSFKDNSN  115 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTB-----CCEEEEEECSSE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEEcCCE
Confidence            57999999999999999999999999999999997532    234567889999998887776     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|               
T Consensus       116 ~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g---------------  178 (350)
T 1rdq_E          116 LYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG---------------  178 (350)
T ss_dssp             EEEEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---------------
T ss_pred             EEEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCC---------------
Confidence            99999999 999999998765  699999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  .+||+|||++..........+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+.
T Consensus       179 ------------~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~  246 (350)
T 1rdq_E          179 ------------YIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI  246 (350)
T ss_dssp             ------------CEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             ------------CEEEcccccceeccCCcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHH
Confidence                        57788888777665555567899999999999999999999999999999999999999998877766


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+......+|                                                  ..++.++.+||.+||+.|
T Consensus       247 ~~~i~~~~~~~p--------------------------------------------------~~~~~~~~~li~~lL~~d  276 (350)
T 1rdq_E          247 YEKIVSGKVRFP--------------------------------------------------SHFSSDLKDLLRNLLQVD  276 (350)
T ss_dssp             HHHHHHCCCCCC--------------------------------------------------TTCCHHHHHHHHHHSCSC
T ss_pred             HHHHHcCCCCCC--------------------------------------------------CCCCHHHHHHHHHHhhcC
Confidence            665544322111                                                  234678999999999999


Q ss_pred             CCCCCC-----HHHHhcCCCCCC
Q 013941          407 PAERLK-----AREALRHPFFTR  424 (433)
Q Consensus       407 P~~R~t-----a~ell~hp~f~~  424 (433)
                      |++||+     ++|+++||||+.
T Consensus       277 p~~R~~~~~~~~~ei~~h~~f~~  299 (350)
T 1rdq_E          277 LTKRFGNLKNGVNDIKNHKWFAT  299 (350)
T ss_dssp             TTTCTTSSTTTTHHHHTSGGGTT
T ss_pred             HHhccCCccCCHHHHHhCcCcCC
Confidence            999998     999999999986

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.2e-51  Score=386.89  Aligned_cols=254  Identities=27%  Similarity=0.413  Sum_probs=214.6

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ..++|++.+.||+|+||+||+|.+..+++.||||++.... ...+.+.+|+.+++.+.|+||     +++++++..++.+
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~~~~~   92 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNI-----VNYLDSYLVGDEL   92 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTB-----CCEEEEEEETTEE
T ss_pred             hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCC-----CeEeEEEEECCEE
Confidence            3468999999999999999999999999999999986433 345667889999999988877     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      |+||||+ +++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++                
T Consensus        93 ~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~----------------  153 (297)
T 3fxz_A           93 WVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDG----------------  153 (297)
T ss_dssp             EEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC----------------
T ss_pred             EEEEECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCC----------------
Confidence            9999999 99999999875   599999999999999999999999999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                 .+||+|||++......   .....||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..
T Consensus       154 -----------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~  222 (297)
T 3fxz_A          154 -----------SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL  222 (297)
T ss_dssp             -----------CEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             -----------CEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                       4677777776543322   23358999999999999999999999999999999999999999887776


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+.......                                               ......++..+.+||.+||+
T Consensus       223 ~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~li~~~l~  255 (297)
T 3fxz_A          223 RALYLIATNGTPE-----------------------------------------------LQNPEKLSAIFRDFLNRCLE  255 (297)
T ss_dssp             HHHHHHHHHCSCC-----------------------------------------------CSCGGGSCHHHHHHHHHHSC
T ss_pred             HHHHHHHhCCCCC-----------------------------------------------CCCccccCHHHHHHHHHHcc
Confidence            6555443321110                                               01123456789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .||++|||++|+++||||+..
T Consensus       256 ~dp~~Rps~~ell~h~~~~~~  276 (297)
T 3fxz_A          256 MDVEKRGSAKELLQHQFLKIA  276 (297)
T ss_dssp             SSTTTSCCHHHHTTCGGGGGC
T ss_pred             CChhHCcCHHHHhhChhhccc
Confidence            999999999999999999864

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=6.5e-52  Score=403.37  Aligned_cols=323  Identities=25%  Similarity=0.409  Sum_probs=219.4

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHH-hCCCCCcceeEeccee
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWF  162 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~  162 (433)
                      +..+.++|++++.||+|+||.||+|.+..+++.||||++...   ........+|+.++..+. |+||     +++++++
T Consensus         4 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~ni-----v~l~~~~   78 (388)
T 3oz6_A            4 DRHVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENI-----VNLLNVL   78 (388)
T ss_dssp             CHHHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTB-----CCEEEEE
T ss_pred             cCcccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCC-----CeeeeEE
Confidence            445567899999999999999999999999999999998642   334566778999999997 7776     9999998


Q ss_pred             ccC--CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          163 DYR--NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       163 ~~~--~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      ...  ..+|+|||||+++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+
T Consensus        79 ~~~~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~  155 (388)
T 3oz6_A           79 RADNDRDVYLVFDYMETDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGL  155 (388)
T ss_dssp             ECTTSSCEEEEEECCSEEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ecCCCCEEEEEecccCcCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcc
Confidence            643  479999999988999999874   599999999999999999999999999999999999998888777777776


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCC-ccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGST-TFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a-~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                      +.............    ...+.+.... ..........+||+.|+|||++.+ ..++.++|||||||++|||++|++||
T Consensus       156 a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf  231 (388)
T 3oz6_A          156 SRSFVNIRRVTNNI----PLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIF  231 (388)
T ss_dssp             CEESSSCCCCCCCG----GGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             cccccccccccccc----cccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCC
Confidence            65433211100000    0000000000 000111233589999999999987 57899999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhh-hhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRA-EKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      .+.+..+++..+...++.++...+....... ..+..................... |..   ...........++++.+
T Consensus       232 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~d  307 (388)
T 3oz6_A          232 PGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTK-WKN---LLLKINPKADCNEEALD  307 (388)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHH-HHH---HHHHHCTTCCCCHHHHH
T ss_pred             CCCCHHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcc-hhh---hcccccccccCCHHHHH
Confidence            9999999999999888877765443211100 000000000000000000000000 000   00011122356789999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||.+||++||++|||++|+|+||||+.-
T Consensus       308 ll~~~L~~dP~~R~t~~e~l~Hp~~~~~  335 (388)
T 3oz6_A          308 LLDKLLQFNPNKRISANDALKHPFVSIF  335 (388)
T ss_dssp             HHHHHCCSSGGGSCCHHHHTTSTTTTTT
T ss_pred             HHHHhhccCcccCCCHHHHhCCHHHHHh
Confidence            9999999999999999999999999764

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=3e-51  Score=397.29  Aligned_cols=250  Identities=22%  Similarity=0.400  Sum_probs=205.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++++.||+|+||.||+|++..+++.||+|++++..    .....+.+|..++.++ +|++|     +++++++.+.+
T Consensus        52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~I-----v~l~~~~~~~~  126 (396)
T 4dc2_A           52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFL-----VGLHSCFQTES  126 (396)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTB-----CCEEEEEECSS
T ss_pred             hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCc-----CeeEEEEEECC
Confidence            57999999999999999999999999999999997542    2234577899999887 67666     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ +++|..++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|              
T Consensus       127 ~~~lV~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g--------------  190 (396)
T 4dc2_A          127 RLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEG--------------  190 (396)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS--------------
T ss_pred             EEEEEEEcCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCC--------------
Confidence            999999999 999999998765  799999999999999999999999999999999999997665              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   .+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus       191 -------------~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~  257 (396)
T 4dc2_A          191 -------------HIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVG  257 (396)
T ss_dssp             -------------CEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTT
T ss_pred             -------------CEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccc
Confidence                         46777777665421   22344689999999999999999999999999999999999999996432


Q ss_pred             hHH---------HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          323 NLE---------HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       323 ~~~---------~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      ..+         ....+....                                                  ...+..++.
T Consensus       258 ~~~~~~~~~~~~~~~~i~~~~--------------------------------------------------~~~p~~~s~  287 (396)
T 4dc2_A          258 SSDNPDQNTEDYLFQVILEKQ--------------------------------------------------IRIPRSLSV  287 (396)
T ss_dssp             C------CCHHHHHHHHHHCC--------------------------------------------------CCCCTTSCH
T ss_pred             cccccchhhHHHHHHHHhccc--------------------------------------------------cCCCCcCCH
Confidence            211         111111110                                                  112234577


Q ss_pred             HHHHHHHHhcccCCCCCCCH------HHHhcCCCCCCC
Q 013941          394 DLIDLLQGLLRYDPAERLKA------REALRHPFFTRD  425 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta------~ell~hp~f~~~  425 (433)
                      ++.+||.+||+.||++|+++      +|+++||||++.
T Consensus       288 ~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i  325 (396)
T 4dc2_A          288 KAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  325 (396)
T ss_dssp             HHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTC
T ss_pred             HHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCC
Confidence            99999999999999999985      899999999863

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=3.6e-51  Score=387.15  Aligned_cols=289  Identities=30%  Similarity=0.537  Sum_probs=213.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++++.||+|+||.||+|.+..+++.||+|+++...  ...+.+.+|+.++++++|+||     +++++++.+++.+|
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~~~~~~   79 (317)
T 2pmi_A            5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENI-----VRLYDVIHTENKLT   79 (317)
T ss_dssp             --------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTB-----CCEEEEECCTTEEE
T ss_pred             cceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCc-----ceEEEEEEECCeEE
Confidence            57999999999999999999999999999999987432  234678899999999988877     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          170 IVFEKLGPSLYDFLRKNS----YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      +||||+.++|.+++....    ...+++..++.++.||+.||.|||++||+||||||+|||++.++              
T Consensus        80 lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~--------------  145 (317)
T 2pmi_A           80 LVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRG--------------  145 (317)
T ss_dssp             EEEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC--------------
T ss_pred             EEEEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCC--------------
Confidence            999999889999987542    13589999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                   .+||+|||++......   .....||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.
T Consensus       146 -------------~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  212 (317)
T 2pmi_A          146 -------------QLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT  212 (317)
T ss_dssp             -------------CEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             -------------CEEECcCccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                         4677777776544322   2335789999999999874 6899999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +..+.+..+.+..+.++...+....... .+..     ....  .........        ........++.++.+||.+
T Consensus       213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~--~~~~~~~~~--------~~~~~~~~~~~~l~~li~~  276 (317)
T 2pmi_A          213 NDEEQLKLIFDIMGTPNESLWPSVTKLP-KYNP-----NIQQ--RPPRDLRQV--------LQPHTKEPLDGNLMDFLHG  276 (317)
T ss_dssp             SHHHHHHHHHHHHCSCCTTTCGGGGGCT-TCCT-----TCCC--CCCCCSHHH--------HGGGCSSCCCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHhCCCChhHhhhhhhhh-hccc-----cccc--ccchhHHHh--------hcccccccCCHHHHHHHHH
Confidence            9999999888888876654433221110 0000     0000  000000000        0112234567899999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      ||+.||++|||++|+|+||||++....
T Consensus       277 ~L~~dP~~Rpt~~e~l~hp~f~~~~~~  303 (317)
T 2pmi_A          277 LLQLNPDMRLSAKQALHHPWFAEYYHH  303 (317)
T ss_dssp             HSCSSGGGSCCHHHHTTSGGGGGGCC-
T ss_pred             HCCCCcccCCCHHHHhCChhhhcccch
Confidence            999999999999999999999986543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=9.2e-51  Score=400.39  Aligned_cols=302  Identities=26%  Similarity=0.414  Sum_probs=221.0

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..+.++|++.+.||+|+||.||+|++..+++.||||++...   ......+.+|+.+++.++|+||     +++++++..
T Consensus        22 ~~i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nI-----v~l~~~~~~   96 (432)
T 3n9x_A           22 VHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYI-----IRLYDLIIP   96 (432)
T ss_dssp             CCCCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTB-----CCEEEECCC
T ss_pred             ceecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCc-----ceEEEEEec
Confidence            34567899999999999999999999999999999999753   2344677899999999998877     999998876


Q ss_pred             C-----CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          165 R-----NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       165 ~-----~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      .     +.+|+||||++++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||
T Consensus        97 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~--~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFG  174 (432)
T 3n9x_A           97 DDLLKFDELYIVLEIADSDLKKLFKTPI--FLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFG  174 (432)
T ss_dssp             SCTTTCCCEEEEEECCSEEHHHHHHSSC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             CCCCcCCeEEEEEecCCcCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCC
Confidence            5     6799999999889999998754  69999999999999999999999999999999999999887766666666


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCC-------ccccCCCcccccCCcccchhhhh-CCCCCccchHHHHHHHHHHH
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGST-------TFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a-------~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwSlG~il~el  311 (433)
                      ++.........         ....++...       ..........+||+.|+|||++. +..++.++|||||||++|||
T Consensus       175 la~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~el  245 (432)
T 3n9x_A          175 LARTINSEKDT---------NIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAEL  245 (432)
T ss_dssp             TCEEC----------------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHH
T ss_pred             Ccccccccccc---------cccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHH
Confidence            55443222110         000000000       00001124468999999999874 55699999999999999999


Q ss_pred             Hh-----------CCCCCCCCC-----------------hHHHHHHHHHHhcCCChhhHHhhhh-hhhhhhcCCccccCC
Q 013941          312 CS-----------GEALFQTHE-----------------NLEHLAMMERVLGPLPHHMVIRADR-RAEKYFRRGARLDWP  362 (433)
Q Consensus       312 ~~-----------g~~pf~~~~-----------------~~~~~~~i~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~  362 (433)
                      ++           |.++|.+.+                 ..+++..+...+|.++...+..... ....+.....     
T Consensus       246 l~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~-----  320 (432)
T 3n9x_A          246 LNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFP-----  320 (432)
T ss_dssp             HTTCTTTCSSGGGCCCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSC-----
T ss_pred             HhcccccccccccccccCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCC-----
Confidence            98           455555543                 3677888888899888765443211 1111111000     


Q ss_pred             CCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          363 DGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                                     ...+..........++++.+||.+||++||++|||++|+|+||||++.
T Consensus       321 ---------------~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~  368 (432)
T 3n9x_A          321 ---------------HRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDHPYLKDV  368 (432)
T ss_dssp             ---------------CCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTCGGGTTT
T ss_pred             ---------------CCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcChhhhhc
Confidence                           000011112234568899999999999999999999999999999975

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.3e-51  Score=393.26  Aligned_cols=249  Identities=24%  Similarity=0.378  Sum_probs=210.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++++.||+|+||.||+|++..+++.||||++++..    ...+....|..++..+ .|++     ++++++++.+.+
T Consensus        20 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~-----iv~l~~~~~~~~   94 (353)
T 2i0e_A           20 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPF-----LTQLHSCFQTMD   94 (353)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTT-----BCCEEEEEECSS
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCE-----EeeEEEEEEcCC
Confidence            57999999999999999999999999999999997532    3345677788888776 4554     499999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ |++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|              
T Consensus        95 ~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g--------------  158 (353)
T 2i0e_A           95 RLYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEG--------------  158 (353)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS--------------
T ss_pred             EEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCC--------------
Confidence            999999999 999999998765  699999999999999999999999999999999999997665              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   .+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+
T Consensus       159 -------------~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~  225 (353)
T 2i0e_A          159 -------------HIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED  225 (353)
T ss_dssp             -------------CEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             -------------cEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC
Confidence                         46667777665422   12334689999999999999999999999999999999999999999887


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+....+......+|                                                  ..++.++.+||.+|
T Consensus       226 ~~~~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~~li~~l  255 (353)
T 2i0e_A          226 EDELFQSIMEHNVAYP--------------------------------------------------KSMSKEAVAICKGL  255 (353)
T ss_dssp             HHHHHHHHHHCCCCCC--------------------------------------------------TTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCC--------------------------------------------------CCCCHHHHHHHHHH
Confidence            7766665554322221                                                  23477899999999


Q ss_pred             cccCCCCCC-----CHHHHhcCCCCCC
Q 013941          403 LRYDPAERL-----KAREALRHPFFTR  424 (433)
Q Consensus       403 L~~dP~~R~-----ta~ell~hp~f~~  424 (433)
                      |+.||++||     +++++++||||+.
T Consensus       256 L~~dP~~R~~~~~~~~~~i~~h~~f~~  282 (353)
T 2i0e_A          256 MTKHPGKRLGCGPEGERDIKEHAFFRY  282 (353)
T ss_dssp             TCSCTTSCTTCSTTHHHHHHTSGGGTT
T ss_pred             hhcCHHHcCCCCCCCHHHHhcCccccC
Confidence            999999999     4799999999985

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.9e-51  Score=394.50  Aligned_cols=260  Identities=28%  Similarity=0.415  Sum_probs=214.6

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      +.++|++.+.||+|+||+||+|++..+++.||||++....      ...+.+.+|+.+++.++|+||     +++++++.
T Consensus        22 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-----v~~~~~~~   96 (351)
T 3c0i_A           22 FEDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHI-----VELLETYS   96 (351)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTB-----CCEEEEEE
T ss_pred             cccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCC-----CcEEEEEE
Confidence            4568999999999999999999999999999999986422      135678899999999988877     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      +.+.+|+||||| +++|.+++...  ....+++..++.++.||+.||+|||++||+||||||+|||++.++         
T Consensus        97 ~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~---------  167 (351)
T 3c0i_A           97 SDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKE---------  167 (351)
T ss_dssp             ETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSS---------
T ss_pred             eCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCC---------
Confidence            999999999999 89998887643  223589999999999999999999999999999999999997644         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                     ....+||+|||++......   ....+||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       168 ---------------~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~p  232 (351)
T 3c0i_A          168 ---------------NSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLP  232 (351)
T ss_dssp             ---------------TTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ---------------CCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCC
Confidence                           2345899999988765433   2345899999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.. ......+.......+.                                              .....++.++.+
T Consensus       233 f~~~~-~~~~~~i~~~~~~~~~----------------------------------------------~~~~~~s~~~~~  265 (351)
T 3c0i_A          233 FYGTK-ERLFEGIIKGKYKMNP----------------------------------------------RQWSHISESAKD  265 (351)
T ss_dssp             SCSSH-HHHHHHHHHTCCCCCH----------------------------------------------HHHTTSCHHHHH
T ss_pred             CCCcH-HHHHHHHHcCCCCCCc----------------------------------------------cccccCCHHHHH
Confidence            98743 2333333221111110                                              112345779999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||.+||+.||++|||+.|+++||||++.
T Consensus       266 li~~~L~~dP~~R~s~~e~l~hp~~~~~  293 (351)
T 3c0i_A          266 LVRRMLMLDPAERITVYEALNHPWLKER  293 (351)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHTSHHHHTH
T ss_pred             HHHHHCCCChhHCcCHHHHhcChhhcCC
Confidence            9999999999999999999999999863

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=4.4e-51  Score=381.29  Aligned_cols=279  Identities=29%  Similarity=0.484  Sum_probs=216.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|++++.||+|+||.||+|++ .+++.||+|++....   .....+.+|+.++++++|+||     +++++++.+.+.+
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~   75 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI-----VKLYDVIHTKKRL   75 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTB-----CCEEEEEECSSCE
T ss_pred             ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCE-----eeeeeEEccCCeE
Confidence            5799999999999999999998 678899999986432   234677899999999988777     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++||||+.++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++                 
T Consensus        76 ~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~-----------------  137 (288)
T 1ob3_A           76 VLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREG-----------------  137 (288)
T ss_dssp             EEEEECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS-----------------
T ss_pred             EEEEEecCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC-----------------
Confidence            9999999779999998653 4699999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                .+||+|||++.....   ......||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.+..
T Consensus       138 ----------~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~  207 (288)
T 1ob3_A          138 ----------ELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEA  207 (288)
T ss_dssp             ----------CEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             ----------CEEEeECccccccCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence                      467777776654332   12234789999999999764 5899999999999999999999999999888


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +.+..+.+..+..+...+...... ..+.     .....               ..+.........++.++.+||.+||+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~---------------~~~~~~~~~~~~~~~~~~~li~~~L~  266 (288)
T 1ob3_A          208 DQLMRIFRILGTPNSKNWPNVTEL-PKYD-----PNFTV---------------YEPLPWESFLKGLDESGIDLLSKMLK  266 (288)
T ss_dssp             HHHHHHHHHHCCCCTTTSTTGGGS-TTCC-----TTCCC---------------CCCCCGGGTCCSCCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCChhhchhhhcc-cccc-----ccccc---------------ccCccHHHHhhhcCHHHHHHHHHHcC
Confidence            888888887766543221111100 0000     00000               00000112234567899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .||++|||++|+++||||++.
T Consensus       267 ~dP~~Rpt~~e~l~hp~f~~~  287 (288)
T 1ob3_A          267 LDPNQRITAKQALEHAYFKEN  287 (288)
T ss_dssp             SSTTTSCCHHHHHTSGGGGC-
T ss_pred             CCcccCCCHHHHhcCcchhhc
Confidence            999999999999999999864

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-52  Score=399.26  Aligned_cols=255  Identities=24%  Similarity=0.401  Sum_probs=210.5

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ...++|++.+.||+|+||.||+|++..+++.||||++....    .....+.+|+.+++.++|+||     +++++++.+
T Consensus         6 ~~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-----v~l~~~~~~   80 (336)
T 3h4j_B            6 RHIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHI-----IKLYDVITT   80 (336)
T ss_dssp             SEETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTB-----CCEEEEEEC
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCC-----CeEEEEEEe
Confidence            34468999999999999999999999999999999986432    233568899999999988877     999999999


Q ss_pred             CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          165 RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       165 ~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .+.+++||||++|+|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++             
T Consensus        81 ~~~~~lv~E~~~g~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~-------------  145 (336)
T 3h4j_B           81 PTDIVMVIEYAGGELFDYIVEKK--RMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNL-------------  145 (336)
T ss_dssp             SSEEEEEECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTC-------------
T ss_pred             CCEEEEEEECCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCC-------------
Confidence            99999999999999999998765  799999999999999999999999999999999999996554             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCC-CccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                    .+||+|||++......  ....+||+.|+|||++.+..+ +.++|||||||++|+|++|..||.+.
T Consensus       146 --------------~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  211 (336)
T 3h4j_B          146 --------------NVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDE  211 (336)
T ss_dssp             --------------CEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCS
T ss_pred             --------------CEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCc
Confidence                          5777788877654332  234589999999999988776 78999999999999999999999764


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      .......                          ...                        ..........++++.+||.+
T Consensus       212 ~~~~~~~--------------------------~i~------------------------~~~~~~p~~~s~~~~~li~~  241 (336)
T 3h4j_B          212 FIPNLFK--------------------------KVN------------------------SCVYVMPDFLSPGAQSLIRR  241 (336)
T ss_dssp             SSTTCBC--------------------------CCC------------------------SSCCCCCTTSCHHHHHHHHT
T ss_pred             cHHHHHH--------------------------HHH------------------------cCCCCCcccCCHHHHHHHHH
Confidence            3211000                          000                        00011123457899999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||+.||.+|||++|+++||||+....
T Consensus       242 ~L~~dP~~Rpt~~eil~hp~~~~~~~  267 (336)
T 3h4j_B          242 MIVADPMQRITIQEIRRDPWFNVNLP  267 (336)
T ss_dssp             TSCSSGGGSCCHHHHTTCHHHHTTCC
T ss_pred             HcCCChhHCcCHHHHHhChhhccCCc
Confidence            99999999999999999999987643

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.7e-51  Score=390.63  Aligned_cols=283  Identities=29%  Similarity=0.480  Sum_probs=219.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhh--HHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY--REAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++++.||+|+||+||+|++..+++.||||+++.....  ...+.+|+.+++.++|+||     +++++++.+.+..+
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~   76 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANI-----VTLHDIIHTEKSLT   76 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTB-----CCEEEEEECSSCEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCC-----CeeeeEEeeCCEEE
Confidence            5799999999999999999999999999999998743321  1234469999999988777     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||||++++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++                  
T Consensus        77 lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~------------------  137 (324)
T 3mtl_A           77 LVFEYLDKDLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERG------------------  137 (324)
T ss_dssp             EEEECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTC------------------
T ss_pred             EEecccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCC------------------
Confidence            999999889999998754 4699999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                               .+||+|||++......   .....||+.|+|||++.+ ..++.++|||||||++|+|++|..||.+.+..+
T Consensus       138 ---------~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~  208 (324)
T 3mtl_A          138 ---------ELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE  208 (324)
T ss_dssp             ---------CEEECSSSEEECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             ---------CEEEccCcccccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                     4667777766543322   223478999999999987 568999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+.+..+.++...+..........     ...++.               ............++.++.+||.+||+.
T Consensus       209 ~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---------------~~~~~~~~~~~~~~~~~~~li~~~L~~  268 (324)
T 3mtl_A          209 QLHFIFRILGTPTEETWPGILSNEEFK-----TYNYPK---------------YRAEALLSHAPRLDSDGADLLTKLLQF  268 (324)
T ss_dssp             HHHHHHHHHCCCCTTTSTTGGGCHHHH-----HTCCCC---------------CCCCCHHHHCTTSCHHHHHHHHHHSCS
T ss_pred             HHHHHHHHhCCCChHhchhhhcchhhc-----cccccc---------------ccchhhhhhcCCCCHHHHHHHHHHcCc
Confidence            999999988877654332211110000     000000               000111223346678999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCcc
Q 013941          406 DPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||++|||++|+|+||||++...
T Consensus       269 dP~~R~t~~e~l~hp~f~~~~~  290 (324)
T 3mtl_A          269 EGRNRISAEDAMKHPFFLSLGE  290 (324)
T ss_dssp             SGGGSCCHHHHTTSGGGGGGCS
T ss_pred             CcccCCCHHHHhcChhhhhccc
Confidence            9999999999999999997644

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=6.7e-51  Score=389.26  Aligned_cols=250  Identities=22%  Similarity=0.391  Sum_probs=204.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++++.||+|+||.||+|++..+++.||+|++++..    ...+.+.+|+.++.++ .|++|     +++++++.+.+
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~i-----v~l~~~~~~~~   83 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFL-----VGLHSCFQTES   83 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTB-----CCEEEEEECSS
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCcc-----CeEEEEEEeCC
Confidence            57999999999999999999999999999999997532    3345577899999887 67666     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|.             
T Consensus        84 ~~~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~-------------  148 (345)
T 3a8x_A           84 RLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGH-------------  148 (345)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSC-------------
T ss_pred             EEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCC-------------
Confidence            999999999 899999998764  7999999999999999999999999999999999999977665             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                    +||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|||++|..||....
T Consensus       149 --------------~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  214 (345)
T 3a8x_A          149 --------------IKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVG  214 (345)
T ss_dssp             --------------EEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTT
T ss_pred             --------------EEEEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcc
Confidence                          5555555554321   12334689999999999999999999999999999999999999996532


Q ss_pred             hH---------HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          323 NL---------EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       323 ~~---------~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      ..         .....+....                                                  ......++.
T Consensus       215 ~~~~~~~~~~~~~~~~i~~~~--------------------------------------------------~~~p~~~s~  244 (345)
T 3a8x_A          215 SSDNPDQNTEDYLFQVILEKQ--------------------------------------------------IRIPRSLSV  244 (345)
T ss_dssp             C-------CHHHHHHHHHHCC--------------------------------------------------CCCCTTSCH
T ss_pred             cccccccccHHHHHHHHHcCC--------------------------------------------------CCCCCCCCH
Confidence            11         1111111100                                                  011234577


Q ss_pred             HHHHHHHHhcccCCCCCCCH------HHHhcCCCCCCC
Q 013941          394 DLIDLLQGLLRYDPAERLKA------REALRHPFFTRD  425 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta------~ell~hp~f~~~  425 (433)
                      ++.+||.+||+.||++||++      +|+++||||++.
T Consensus       245 ~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~  282 (345)
T 3a8x_A          245 KAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  282 (345)
T ss_dssp             HHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTC
T ss_pred             HHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCC
Confidence            99999999999999999995      899999999863

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1.8e-51  Score=391.31  Aligned_cols=286  Identities=28%  Similarity=0.489  Sum_probs=219.8

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|+++++||+|+||+||+|++..+++.||||+++...   .....+.+|+.++++++|+||     +++++++.+.+.
T Consensus        33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~  107 (329)
T 3gbz_A           33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNI-----IELKSVIHHNHR  107 (329)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTB-----CCEEEEEEETTE
T ss_pred             hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCc-----ceEEEEEecCCE
Confidence            467999999999999999999999999999999997433   223456789999999988877     999999999999


Q ss_pred             EEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          168 ICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       168 ~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      +|+||||+.++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.               
T Consensus       108 ~~lv~e~~~~~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~---------------  170 (329)
T 3gbz_A          108 LHLIFEYAENDLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDA---------------  170 (329)
T ss_dssp             EEEEEECCSEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC------------------
T ss_pred             EEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCC---------------
Confidence            99999999889999998765  6999999999999999999999999999999999999975441               


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                             +....+||+|||++......   .....||+.|+|||++.+. .++.++|||||||++|+|++|..||.+...
T Consensus       171 -------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  243 (329)
T 3gbz_A          171 -------SETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSE  243 (329)
T ss_dssp             ---------CCEEEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             -------CccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCH
Confidence                   23446899999988654322   2335789999999999875 489999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      .+.+..+....+.++...+.......      .....++....              ..........++.++.+||.+||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~li~~~L  303 (329)
T 3gbz_A          244 IDQLFKIFEVLGLPDDTTWPGVTALP------DWKQSFPKFRG--------------KTLKRVLGALLDDEGLDLLTAML  303 (329)
T ss_dssp             HHHHHHHHHHHCCCCTTTSTTGGGST------TCCTTCCCCCC--------------CCHHHHHGGGSCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCchhhhhhhhhhh------hhhhhhhhhcc--------------ccHhhhcccccCHHHHHHHHHHc
Confidence            88888888877765543222111000      00001111000              00111112235778999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCC
Q 013941          404 RYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +.||++|||++|+|+||||++.
T Consensus       304 ~~dP~~R~t~~e~l~hp~f~~~  325 (329)
T 3gbz_A          304 EMDPVKRISAKNALEHPYFSHN  325 (329)
T ss_dssp             CSSGGGSCCHHHHHTSGGGSSS
T ss_pred             cCChhhCCCHHHHhCCcccCCC
Confidence            9999999999999999999975

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=3.8e-51  Score=393.66  Aligned_cols=258  Identities=28%  Similarity=0.408  Sum_probs=204.2

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .++|++++.||+|+||+||+|++..+++.||||++.......+.+.+|+.+++.++|+||     +++++++.+.+.+|+
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~~~~~~~~~l   93 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNI-----VRFKEVILTPTHLAI   93 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTB-----CCEEEEEECSSEEEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCC-----CcEEEEEeeCCEEEE
Confidence            357999999999999999999999999999999998766666778899999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                  
T Consensus        94 v~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~------------------  153 (361)
T 3uc3_A           94 IMEYASGGELYERICNAG--RFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSP------------------  153 (361)
T ss_dssp             EEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSS------------------
T ss_pred             EEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCC------------------
Confidence            99999 999999998765  699999999999999999999999999999999999996543                  


Q ss_pred             cccCCCCCCCeeeecCCCCcccc--CCCcccccCCcccchhhhhCCCCCcc-chHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEH--QDHSYVVSTRHYRAPEVILGLGWNYP-CDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~-~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                             ...+||+|||++....  .......||+.|+|||++.+..++.+ +|||||||++|+|++|+.||.+......
T Consensus       154 -------~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~  226 (361)
T 3uc3_A          154 -------APRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRD  226 (361)
T ss_dssp             -------SCCEEECCCCCC---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCC
T ss_pred             -------CceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHH
Confidence                   2348899999886432  22344689999999999998887655 8999999999999999999986543222


Q ss_pred             HHHH-HHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          327 LAMM-ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       327 ~~~i-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ...+ .......                     ..+                        .....++.++.+||.+||+.
T Consensus       227 ~~~~~~~~~~~~---------------------~~~------------------------~~~~~~s~~~~~li~~~L~~  261 (361)
T 3uc3_A          227 YRKTIQRILSVK---------------------YSI------------------------PDDIRISPECCHLISRIFVA  261 (361)
T ss_dssp             HHHHHHHHHTTC---------------------CCC------------------------CTTSCCCHHHHHHHHHHSCS
T ss_pred             HHHHHHHHhcCC---------------------CCC------------------------CCcCCCCHHHHHHHHHHccC
Confidence            1111 1111000                     000                        01124577899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCC
Q 013941          406 DPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||++|||+.|+++||||.+.
T Consensus       262 dP~~Rps~~ell~hp~f~~~  281 (361)
T 3uc3_A          262 DPATRISIPEIKTHSWFLKN  281 (361)
T ss_dssp             CTTTSCCHHHHHTSHHHHTT
T ss_pred             ChhHCcCHHHHHhCcchhcC
Confidence            99999999999999999764

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=3.6e-51  Score=394.43  Aligned_cols=283  Identities=27%  Similarity=0.500  Sum_probs=211.6

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.++|++++.||+|+||.||+|.+..+|+.||||++...   ......+.+|+.+++.++|+||     +++++++...
T Consensus        26 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-----v~~~~~~~~~  100 (367)
T 2fst_X           26 EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV-----IGLLDVFTPA  100 (367)
T ss_dssp             EEETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTB-----CCCSEEECSC
T ss_pred             CCCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCC-----CcEEEEEecC
Confidence            3457899999999999999999999999999999998643   2345667789999999988877     8998887643


Q ss_pred             ------CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          166 ------NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       166 ------~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                            +.+|+|||+++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++        
T Consensus       101 ~~~~~~~~~~lv~e~~~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~--------  169 (367)
T 2fst_X          101 RSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDC--------  169 (367)
T ss_dssp             SSGGGCCCCEEEEECCCEECC-----C---CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC--------
T ss_pred             CccccCCeEEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCC--------
Confidence                  678999999999999998763   699999999999999999999999999999999999996554        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                         .+||+|||++..........+||+.|+|||++.+ ..++.++|||||||++|+|++|+.||
T Consensus       170 -------------------~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  230 (367)
T 2fst_X          170 -------------------ELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLF  230 (367)
T ss_dssp             -------------------CEEECC---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred             -------------------CEEEeeccccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                               5778888877765555555689999999999987 57899999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhh-hhhhhcCCccccCCCCCCchhhHHHHHHhcCch-hhhhhccCCchHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRR-AEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP-NLIMQHVDHSAGDLI  396 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~  396 (433)
                      .+.+..+.+..+.+..+.++...+...... ...+...-                     ...+ ..........++.+.
T Consensus       231 ~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~  289 (367)
T 2fst_X          231 PGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSL---------------------TQMPKMNFANVFIGANPLAV  289 (367)
T ss_dssp             CCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTS---------------------CCCCCCCHHHHTTTCCHHHH
T ss_pred             CCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhcc---------------------CCCCCCCHHHHCCCCCHHHH
Confidence            999999999999999998876654432111 11111100                     0000 001112235577899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      +||.+||+.||++|||++|+|+||||++...
T Consensus       290 dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~  320 (367)
T 2fst_X          290 DLLEKMLVLDSDKRITAAQALAHAYFAQYHD  320 (367)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             HHHHHhCCCCcccCcCHHHHhcChhhhhccC
Confidence            9999999999999999999999999997543

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=1.5e-51  Score=401.69  Aligned_cols=258  Identities=25%  Similarity=0.446  Sum_probs=199.6

Q ss_pred             CCCeEEe-ccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceecc----
Q 013941           91 TPRYRIL-SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDY----  164 (433)
Q Consensus        91 ~~~y~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~----  164 (433)
                      .++|.+. +.||+|+||+||+|.+..+++.||||+++..    ....+|+.++.++ .|+||     +++++++..    
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~E~~~~~~~~~hp~i-----v~l~~~~~~~~~~  130 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHI-----VRIVDVYENLYAG  130 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTB-----CCEEEEEEEEETT
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc----hhHHHHHHHHHHhcCCCCc-----ceEeEEEeecccC
Confidence            3457776 7899999999999999999999999998643    3466788887555 45555     999888765    


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      .+.+||||||| +++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++..+            
T Consensus       131 ~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~------------  198 (400)
T 1nxk_A          131 RKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKR------------  198 (400)
T ss_dssp             EEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSS------------
T ss_pred             CcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCC------------
Confidence            67899999999 88999999876555799999999999999999999999999999999999997532            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                  .+..+||+|||++......  ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.
T Consensus       199 ------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  266 (400)
T 1nxk_A          199 ------------PNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN  266 (400)
T ss_dssp             ------------TTCCEEECCCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred             ------------CCccEEEEecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCC
Confidence                        2456888999988754432  24468999999999999989999999999999999999999999765


Q ss_pred             ChHH----HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          322 ENLE----HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       322 ~~~~----~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      ....    ....+......+|                                              ......++.++.+
T Consensus       267 ~~~~~~~~~~~~i~~~~~~~~----------------------------------------------~~~~~~~s~~~~~  300 (400)
T 1nxk_A          267 HGLAISPGMKTRIRMGQYEFP----------------------------------------------NPEWSEVSEEVKM  300 (400)
T ss_dssp             TTCSSCCSHHHHHHHTCCCCC----------------------------------------------TTTTTTSCHHHHH
T ss_pred             ccccccHHHHHHHHcCcccCC----------------------------------------------CcccccCCHHHHH
Confidence            4321    1111111100000                                              0112346789999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||.+||+.||++|||+.|+++||||.+...
T Consensus       301 li~~~L~~dP~~Rpt~~eil~hp~~~~~~~  330 (400)
T 1nxk_A          301 LIRNLLKTEPTQRMTITEFMNHPWIMQSTK  330 (400)
T ss_dssp             HHHTTSCSSGGGSCCHHHHHHSHHHHTTTT
T ss_pred             HHHHHCCCChhHCcCHHHHhcCccccCCCC
Confidence            999999999999999999999999987543

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-50  Score=392.82  Aligned_cols=260  Identities=26%  Similarity=0.467  Sum_probs=219.7

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +.++|++.+.||+|+||.||+|.+..+++.||+|++.... .....+.+|+.+++.++|+||     +++++++.+.+.+
T Consensus        49 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnI-----v~~~~~~~~~~~~  123 (387)
T 1kob_A           49 VYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL-----INLHDAFEDKYEM  123 (387)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTB-----CCEEEEEECSSEE
T ss_pred             cccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCC-----CeEEEEEEeCCEE
Confidence            4468999999999999999999999999999999987543 334567889999999988777     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.+                 
T Consensus       124 ~lv~E~~~gg~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~-----------------  185 (387)
T 1kob_A          124 VLILEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETK-----------------  185 (387)
T ss_dssp             EEEEECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESST-----------------
T ss_pred             EEEEEcCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecC-----------------
Confidence            9999999 999999987543 369999999999999999999999999999999999999642                 


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                              ....+||+|||++.......  ....||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+
T Consensus       186 --------~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~  257 (387)
T 1kob_A          186 --------KASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLE  257 (387)
T ss_dssp             --------TCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH
T ss_pred             --------CCCceEEEecccceecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHH
Confidence                    23468999999887654332  33579999999999999999999999999999999999999999887776


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+......++.                                              .....++.++.+||.+||+.
T Consensus       258 ~~~~i~~~~~~~~~----------------------------------------------~~~~~~s~~~~~li~~~L~~  291 (387)
T 1kob_A          258 TLQNVKRCDWEFDE----------------------------------------------DAFSSVSPEAKDFIKNLLQK  291 (387)
T ss_dssp             HHHHHHHCCCCCCS----------------------------------------------STTTTSCHHHHHHHHTTSCS
T ss_pred             HHHHHHhCCCCCCc----------------------------------------------cccccCCHHHHHHHHHHcCC
Confidence            66655443211110                                              11234577999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCc
Q 013941          406 DPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||++|||+.|+|+||||++..
T Consensus       292 dP~~Rpt~~ell~hp~~~~~~  312 (387)
T 1kob_A          292 EPRKRLTVHDALEHPWLKGDH  312 (387)
T ss_dssp             SGGGSCCHHHHHTSTTTSSCC
T ss_pred             ChhHCcCHHHHhhCccccCCc
Confidence            999999999999999998753

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=3.4e-50  Score=374.37  Aligned_cols=263  Identities=25%  Similarity=0.411  Sum_probs=223.2

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..+.++|++.+.||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+.++++++|+|+     +++++++..
T Consensus         2 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~   76 (284)
T 3kk8_A            2 TKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNI-----VRLHDSIQE   76 (284)
T ss_dssp             CTTTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEEC
T ss_pred             chhhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCc-----CeEEEEEEc
Confidence            356789999999999999999999999999999999986533   334667789999999988877     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      .+..++||||+ +++|.+.+....  .+++..+..++.||+.||.|||++||+||||||+||+++.++            
T Consensus        77 ~~~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~------------  142 (284)
T 3kk8_A           77 ESFHYLVFDLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKA------------  142 (284)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSS------------
T ss_pred             CCEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCC------------
Confidence            99999999999 889999988764  699999999999999999999999999999999999997644            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                  ....+||+|||++.......  ....||+.|+|||++.+..++.++|||||||++|+|++|..||.+.
T Consensus       143 ------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  210 (284)
T 3kk8_A          143 ------------KGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  210 (284)
T ss_dssp             ------------TTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ------------CCCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC
Confidence                        23458999999886654433  3357999999999999999999999999999999999999999988


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +.......+.......|.                                              .....+++++.+||.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~li~~  244 (284)
T 3kk8_A          211 DQHRLYAQIKAGAYDYPS----------------------------------------------PEWDTVTPEAKSLIDS  244 (284)
T ss_dssp             SHHHHHHHHHHTCCCCCT----------------------------------------------TTTTTSCHHHHHHHHH
T ss_pred             chhHHHHHHHhccccCCc----------------------------------------------hhhcccCHHHHHHHHH
Confidence            777666655543322221                                              0113456789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||+.||++|||++|+++||||++..+
T Consensus       245 ~l~~dp~~Rps~~~~l~h~~~~~~~~  270 (284)
T 3kk8_A          245 MLTVNPKKRITADQALKVPWICNRER  270 (284)
T ss_dssp             HSCSSTTTSCCHHHHTTSHHHHSCCC
T ss_pred             HcccChhhCCCHHHHhcCccccCChh
Confidence            99999999999999999999997644

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.5e-51  Score=398.84  Aligned_cols=254  Identities=24%  Similarity=0.416  Sum_probs=213.1

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|++++.||+|+||.||+|++..+++.||+|++++..    .....+.+|+.+++.++|++|     +++++++.+.+
T Consensus        68 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~I-----v~l~~~~~~~~  142 (410)
T 3v8s_A           68 AEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWV-----VQLFYAFQDDR  142 (410)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTB-----CCEEEEEECSS
T ss_pred             ccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEEECC
Confidence            467999999999999999999999999999999997532    223347789999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||| ||+|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.+|              
T Consensus       143 ~~~lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g--------------  205 (410)
T 3v8s_A          143 YLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSG--------------  205 (410)
T ss_dssp             EEEEEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS--------------
T ss_pred             EEEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCC--------------
Confidence            999999999 99999999764   599999999999999999999999999999999999997665              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCC----CCccchHHHHHHHHHHHHhCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLG----WNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~----~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                   .+||+|||++......    ....+||+.|+|||++.+..    ++.++|||||||++|||++|..|
T Consensus       206 -------------~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~P  272 (410)
T 3v8s_A          206 -------------HLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTP  272 (410)
T ss_dssp             -------------CEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCT
T ss_pred             -------------CEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCC
Confidence                         4677777776544332    23468999999999998765    78999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+.......+......+                      .++                        ....++.++++
T Consensus       273 f~~~~~~~~~~~i~~~~~~~----------------------~~p------------------------~~~~~s~~~~~  306 (410)
T 3v8s_A          273 FYADSLVGTYSKIMNHKNSL----------------------TFP------------------------DDNDISKEAKN  306 (410)
T ss_dssp             TCCSSHHHHHHHHHTHHHHC----------------------CCC------------------------TTCCCCHHHHH
T ss_pred             CCCCChhhHHHHHHhccccc----------------------cCC------------------------CcccccHHHHH
Confidence            99888777766665421100                      000                        11245789999


Q ss_pred             HHHHhcccCCCC--CCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAE--RLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~--R~ta~ell~hp~f~~~  425 (433)
                      ||.+||+.+|.+  |++++||++||||++.
T Consensus       307 li~~lL~~~~~rlgR~~~~ei~~Hp~f~~~  336 (410)
T 3v8s_A          307 LICAFLTDREVRLGRNGVEEIKRHLFFKND  336 (410)
T ss_dssp             HHHHHSSCGGGCTTSSCHHHHHTSGGGCCS
T ss_pred             HHHHHccChhhhCCCCCHHHHhcCccccCC
Confidence            999999999988  9999999999999863

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=1.2e-50  Score=407.48  Aligned_cols=271  Identities=26%  Similarity=0.458  Sum_probs=226.8

Q ss_pred             CCCceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--------------hhHHHHHHHHHHHH
Q 013941           78 KDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--------------KYREAAMIEIDVLQ  143 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--------------~~~~~~~~E~~~l~  143 (433)
                      ..+.|....+..+.++|+++++||+|+||+||+|++..+++.||||++....              ...+.+.+|+.+++
T Consensus        22 ~~~~~~~~~~~~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~  101 (504)
T 3q5i_A           22 NPGMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLK  101 (504)
T ss_dssp             CGGGGCCEECSCGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHH
T ss_pred             chhheeeccCCCcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHH
Confidence            3455666667778899999999999999999999999999999999987532              23467889999999


Q ss_pred             HHHhCCCCCcceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCC
Q 013941          144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKP  222 (433)
Q Consensus       144 ~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp  222 (433)
                      ++.|+||     +++++++.+.+.+|+||||| +++|.+++....  .+++..++.++.||+.||+|||++||+||||||
T Consensus       102 ~l~hpni-----v~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp  174 (504)
T 3q5i_A          102 SLDHPNI-----IKLFDVFEDKKYFYLVTEFYEGGELFEQIINRH--KFDECDAANIMKQILSGICYLHKHNIVHRDIKP  174 (504)
T ss_dssp             TCCCTTB-----CCEEEEEECSSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSG
T ss_pred             hCCCCCC-----CeEEEEEEcCCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcH
Confidence            9988877     99999999999999999999 899999998765  799999999999999999999999999999999


Q ss_pred             CcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccch
Q 013941          223 ENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCD  300 (433)
Q Consensus       223 ~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~D  300 (433)
                      +|||++.++                        ....+||+|||++......  ....+||+.|+|||++.+ .++.++|
T Consensus       175 ~Nil~~~~~------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~D  229 (504)
T 3q5i_A          175 ENILLENKN------------------------SLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKK-KYNEKCD  229 (504)
T ss_dssp             GGEEESSTT------------------------CCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTT-CBCTHHH
T ss_pred             HHEEEecCC------------------------CCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhcc-CCCchHH
Confidence            999997644                        2236899999998765433  234689999999999874 6899999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCc
Q 013941          301 LWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL  380 (433)
Q Consensus       301 iwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (433)
                      ||||||++|+|++|..||.+.+..+.+..+......++.                                         
T Consensus       230 iwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~-----------------------------------------  268 (504)
T 3q5i_A          230 VWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDF-----------------------------------------  268 (504)
T ss_dssp             HHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCH-----------------------------------------
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCc-----------------------------------------
Confidence            999999999999999999998887777766553322221                                         


Q ss_pred             hhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       381 ~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                           ..+..++.++++||.+||+.||++|||++|+|+||||++..
T Consensus       269 -----~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~  309 (504)
T 3q5i_A          269 -----NDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKYA  309 (504)
T ss_dssp             -----HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHTC
T ss_pred             -----cccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCHhhhhch
Confidence                 11234577999999999999999999999999999998653

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=9e-51  Score=389.37  Aligned_cols=263  Identities=27%  Similarity=0.445  Sum_probs=204.2

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .+.+.++|++.+.||+|+||.||+|++..+++.||||+++... ..+.+.+|+.+++++.|+||     +++++++.+.+
T Consensus        48 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~  121 (349)
T 2w4o_A           48 RDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV-DKKIVRTEIGVLLRLSHPNI-----IKLKEIFETPT  121 (349)
T ss_dssp             CSCGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------CHHHHHCCCTTB-----CCEEEEEECSS
T ss_pred             cccccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch-hHHHHHHHHHHHHhCCCCCC-----cceeeeEecCC
Confidence            3556788999999999999999999999999999999997543 34567789999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++..               
T Consensus       122 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~---------------  184 (349)
T 2w4o_A          122 EISLVLELVTGGELFDRIVEKG--YYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATP---------------  184 (349)
T ss_dssp             EEEEEECCCCSCBHHHHHTTCS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSS---------------
T ss_pred             eEEEEEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecC---------------
Confidence            999999999 899999997654  69999999999999999999999999999999999999642               


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                               +.+..+||+|||++......  .....||+.|+|||++.+..++.++|||||||++|+|++|..||.....
T Consensus       185 ---------~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  255 (349)
T 2w4o_A          185 ---------APDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERG  255 (349)
T ss_dssp             ---------STTCCEEECCCC----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTC
T ss_pred             ---------CCCCCEEEccCccccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcc
Confidence                     13456889999988754432  2345799999999999999999999999999999999999999977655


Q ss_pred             HH-HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          324 LE-HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       324 ~~-~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      .. ....+.......+                                              ......++.++.+||.+|
T Consensus       256 ~~~~~~~i~~~~~~~~----------------------------------------------~~~~~~~~~~~~~li~~~  289 (349)
T 2w4o_A          256 DQFMFRRILNCEYYFI----------------------------------------------SPWWDEVSLNAKDLVRKL  289 (349)
T ss_dssp             HHHHHHHHHTTCCCCC----------------------------------------------TTTTTTSCHHHHHHHHTT
T ss_pred             cHHHHHHHHhCCCccC----------------------------------------------CchhhhCCHHHHHHHHHH
Confidence            44 2222222111110                                              011234577899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          403 LRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      |+.||++|||+.|+|+||||++...
T Consensus       290 L~~dP~~Rpt~~e~l~hp~~~~~~~  314 (349)
T 2w4o_A          290 IVLDPKKRLTTFQALQHPWVTGKAA  314 (349)
T ss_dssp             SCSSGGGSCCHHHHHHSTTTTSTTC
T ss_pred             ccCChhhCcCHHHHhcCcccCCCcc
Confidence            9999999999999999999997543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=3.5e-51  Score=390.75  Aligned_cols=258  Identities=25%  Similarity=0.428  Sum_probs=210.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCe
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .+.++|++.+.||+|+||.||+|.+..+++.||||++.+...   ...+|++++.++ .|+||     +++++++.+++.
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~E~~~l~~~~~hp~i-----v~~~~~~~~~~~   90 (342)
T 2qr7_A           19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR---DPTEEIEILLRYGQHPNI-----ITLKDVYDDGKY   90 (342)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC---CCHHHHHHHHHHTTSTTB-----CCEEEEEECSSE
T ss_pred             CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC---ChHHHHHHHHHhcCCCCc-----CeEEEEEEcCCE
Confidence            455789999999999999999999999999999999975432   235688888888 57666     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||| +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||+....               
T Consensus        91 ~~lv~E~~~gg~L~~~i~~~~--~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~---------------  153 (342)
T 2qr7_A           91 VYVVTELMKGGELLDKILRQK--FFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDES---------------  153 (342)
T ss_dssp             EEEEECCCCSCBHHHHHHTCT--TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSS---------------
T ss_pred             EEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCC---------------
Confidence            99999999 899999998764  799999999999999999999999999999999999985432               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC-
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE-  322 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~-  322 (433)
                              .....+||+|||++......   ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.. 
T Consensus       154 --------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~  225 (342)
T 2qr7_A          154 --------GNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD  225 (342)
T ss_dssp             --------CSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTT
T ss_pred             --------CCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCc
Confidence                    12235899999988754432   234588999999999998889999999999999999999999997632 


Q ss_pred             --hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          323 --NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       323 --~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                        ..+....+......++                                              ...+..++.++.+||.
T Consensus       226 ~~~~~~~~~i~~~~~~~~----------------------------------------------~~~~~~~s~~~~~li~  259 (342)
T 2qr7_A          226 DTPEEILARIGSGKFSLS----------------------------------------------GGYWNSVSDTAKDLVS  259 (342)
T ss_dssp             SCHHHHHHHHHHCCCCCC----------------------------------------------STTTTTSCHHHHHHHH
T ss_pred             CCHHHHHHHHccCCcccC----------------------------------------------ccccccCCHHHHHHHH
Confidence              2233333322111111                                              0112356789999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||+.||++|||+.|+++||||.+.
T Consensus       260 ~~L~~dP~~R~t~~~il~hp~~~~~  284 (342)
T 2qr7_A          260 KMLHVDPHQRLTAALVLRHPWIVHW  284 (342)
T ss_dssp             HHTCSSTTTSCCHHHHTTSHHHHTG
T ss_pred             HHCCCChhHCcCHHHHhcCCeecCc
Confidence            9999999999999999999999764

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=4.6e-50  Score=386.95  Aligned_cols=290  Identities=29%  Similarity=0.536  Sum_probs=228.3

Q ss_pred             ecCCcc--CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           85 AIGENL--TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        85 ~~~~~~--~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      ..|+.+  .++|++++.||+|+||.||+|++..+++.||||++...  ......+.+|+.++.+++|+||     +++++
T Consensus        18 ~~g~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~~~~   92 (364)
T 3qyz_A           18 VRGQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENI-----IGIND   92 (364)
T ss_dssp             CC-CBCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTB-----CCCCE
T ss_pred             EccEeccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCC-----cccee
Confidence            334444  47899999999999999999999999999999999743  2344677899999999998877     88888


Q ss_pred             eeccC-----CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccc
Q 013941          161 WFDYR-----NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV  235 (433)
Q Consensus       161 ~~~~~-----~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l  235 (433)
                      ++...     ...|+||||++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++    
T Consensus        93 ~~~~~~~~~~~~~~iv~e~~~~~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~----  165 (364)
T 3qyz_A           93 IIRAPTIEQMKDVYIVQDLMETDLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTC----  165 (364)
T ss_dssp             EECCSSTTTCCCEEEEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC----
T ss_pred             EEecCCccccceEEEEEcccCcCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCC----
Confidence            88654     479999999988999999765   599999999999999999999999999999999999997655    


Q ss_pred             cCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCC-CCCccchHHHHHHHH
Q 013941          236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCIL  308 (433)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il  308 (433)
                                             .+||+|||++......      .....||+.|+|||++.+. .++.++|||||||++
T Consensus       166 -----------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il  222 (364)
T 3qyz_A          166 -----------------------DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCIL  222 (364)
T ss_dssp             -----------------------CEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHH
T ss_pred             -----------------------CEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHH
Confidence                                   4677777777544322      1335899999999987654 589999999999999


Q ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhh-hhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhc
Q 013941          309 VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADR-RAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH  387 (433)
Q Consensus       309 ~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (433)
                      |+|++|+.||.+.+..+.+..+...++.++...+..... ....+...     .+.               .........
T Consensus       223 ~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---------------~~~~~~~~~  282 (364)
T 3qyz_A          223 AEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLS-----LPH---------------KNKVPWNRL  282 (364)
T ss_dssp             HHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHT-----SCC---------------CCCCCHHHH
T ss_pred             HHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHh-----cCC---------------ccCCCHHHh
Confidence            999999999999999999999999888877655432211 00001000     000               000001122


Q ss_pred             cCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       388 ~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      ....+.++.+||.+||++||++|||++|+|+||||++...+.
T Consensus       283 ~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~~~~  324 (364)
T 3qyz_A          283 FPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPS  324 (364)
T ss_dssp             CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTCCGG
T ss_pred             CCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhhccCcc
Confidence            345678999999999999999999999999999999865443

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=1.3e-50  Score=384.62  Aligned_cols=262  Identities=29%  Similarity=0.497  Sum_probs=194.8

Q ss_pred             CCeEEe---ccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHH-hCCCCCcceeEecceeccCCe
Q 013941           92 PRYRIL---SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~---~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.   +.||+|+||.||+|.+..+++.||||++...  ......+|+.+++.+. |+||     +++++++.+.+.
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~e~~~l~~l~~h~ni-----v~~~~~~~~~~~   80 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR--MEANTQKEITALKLCEGHPNI-----VKLHEVFHDQLH   80 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG--GHHHHHHHHHHHHHTTTCTTB-----CCEEEEEECSSE
T ss_pred             hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh--hhhhHHHHHHHHHHhcCCCCe-----eEEEEEEEcCCE
Confidence            467776   7899999999999999999999999998653  3456778999999997 6666     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~---------------  143 (325)
T 3kn6_A           81 TFLVMELLNGGELFERIKKKK--HFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDEN---------------  143 (325)
T ss_dssp             EEEEECCCCSCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC-----------------
T ss_pred             EEEEEEccCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCC---------------
Confidence            99999999 889999998764  799999999999999999999999999999999999997644               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                               ....+||+|||++......   ....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+.
T Consensus       144 ---------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  214 (325)
T 3kn6_A          144 ---------DNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDR  214 (325)
T ss_dssp             -----------CEEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC----
T ss_pred             ---------CcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCcc
Confidence                     2336889999988754332   2345789999999999999999999999999999999999999976543


Q ss_pred             H-------HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          324 L-------EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       324 ~-------~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      .       +....+......+                                              .......++.++.
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~----------------------------------------------~~~~~~~~s~~~~  248 (325)
T 3kn6_A          215 SLTCTSAVEIMKKIKKGDFSF----------------------------------------------EGEAWKNVSQEAK  248 (325)
T ss_dssp             ---CCCHHHHHHHHTTTCCCC----------------------------------------------CSHHHHTSCHHHH
T ss_pred             ccccccHHHHHHHHHcCCCCC----------------------------------------------CcccccCCCHHHH
Confidence            2       1111111100000                                              0111234577999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCCccccCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP  432 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~~~~  432 (433)
                      +||.+||+.||++|||++|+++||||++.......|
T Consensus       249 ~li~~~L~~dP~~Rpt~~ell~h~w~~~~~~~~~~~  284 (325)
T 3kn6_A          249 DLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNP  284 (325)
T ss_dssp             HHHHHHHCCCTTTCCCTTTSTTCGGGCTTCCCCCSC
T ss_pred             HHHHHHCCCChhHCCCHHHHhcChhhccCccCCCCC
Confidence            999999999999999999999999999875544444

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=5.9e-51  Score=386.59  Aligned_cols=256  Identities=22%  Similarity=0.388  Sum_probs=207.5

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +.++|++++.||+|+||+||+|++..+++.||||++....  ...+.+.+|+.+++.+.|+||     +++++++.+++.
T Consensus         5 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-----v~~~~~~~~~~~   79 (323)
T 3tki_A            5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENV-----VKFYGHRREGNI   79 (323)
T ss_dssp             TTTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTB-----CCEEEEEECSSE
T ss_pred             HhhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCC-----CeEEEEEecCCe
Confidence            4568999999999999999999999999999999986432  233567889999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~---------------  142 (323)
T 3tki_A           80 QYLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERD---------------  142 (323)
T ss_dssp             EEEEEECCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC---------------
T ss_pred             EEEEEEcCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCC---------------
Confidence            99999999 889999987654  699999999999999999999999999999999999996654               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCC-CccchHHHHHHHHHHHHhCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                  .+||+|||++......     .....||+.|+|||++.+..+ +.++|||||||++|+|++|..||..
T Consensus       143 ------------~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  210 (323)
T 3tki_A          143 ------------NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQ  210 (323)
T ss_dssp             ------------CEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSS
T ss_pred             ------------CEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCC
Confidence                        5777777777543211     234589999999999988775 7899999999999999999999976


Q ss_pred             CChHHHH-HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          321 HENLEHL-AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       321 ~~~~~~~-~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ....... ..+.....                                                .......++..+.+||
T Consensus       211 ~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~li  242 (323)
T 3tki_A          211 PSDSCQEYSDWKEKKT------------------------------------------------YLNPWKKIDSAPLALL  242 (323)
T ss_dssp             SCTTSHHHHHHHTTCT------------------------------------------------TSTTGGGSCHHHHHHH
T ss_pred             CchHHHHHHHHhcccc------------------------------------------------cCCccccCCHHHHHHH
Confidence            5543211 11110000                                                0001134567899999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          400 QGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .+||+.||++|||++|+++||||++...
T Consensus       243 ~~~L~~dP~~R~t~~eil~h~~~~~~~~  270 (323)
T 3tki_A          243 HKILVENPSARITIPDIKKDRWYNKPLK  270 (323)
T ss_dssp             HHHSCSSTTTSCCHHHHTTCTTTTCCCC
T ss_pred             HHHccCChhhCcCHHHHhhChhhccccc
Confidence            9999999999999999999999987543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-50  Score=381.38  Aligned_cols=260  Identities=25%  Similarity=0.330  Sum_probs=206.1

Q ss_pred             CceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHH-HhCCCCCcce
Q 013941           80 GHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRL-ARHDIGGTRC  155 (433)
Q Consensus        80 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l-~~~~i~~~~~  155 (433)
                      ++++...++.+.++|++.++||+|+||+||+|++..+++.||||++....   ........|+..+.++ .|+++     
T Consensus        45 ~~~p~~~~~~~~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~i-----  119 (311)
T 3p1a_A           45 GYDPSRPESFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCC-----  119 (311)
T ss_dssp             TCCTTSSSCHHHHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTB-----
T ss_pred             CCCCCCccchhhhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcE-----
Confidence            44455566777789999999999999999999999999999999986432   2334445566666555 56665     


Q ss_pred             eEecceeccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccc
Q 013941          156 VQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV  235 (433)
Q Consensus       156 v~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l  235 (433)
                      +++++++.+++.+|+||||++++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++    
T Consensus       120 v~l~~~~~~~~~~~lv~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~----  194 (311)
T 3p1a_A          120 VRLEQAWEEGGILYLQTELCGPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRG----  194 (311)
T ss_dssp             CCEEEEEEETTEEEEEEECCCCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGG----
T ss_pred             EEEEEEEEeCCEEEEEEeccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCC----
Confidence            99999999999999999999999999988754 4699999999999999999999999999999999999997655    


Q ss_pred             cCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh
Q 013941          236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  313 (433)
                                             .+||+|||++.......  ....||+.|+|||++.+ .++.++|||||||++|||++
T Consensus       195 -----------------------~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~  250 (311)
T 3p1a_A          195 -----------------------RCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVAC  250 (311)
T ss_dssp             -----------------------CEEECCCTTCEECC------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHH
T ss_pred             -----------------------CEEEccceeeeecccCCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHh
Confidence                                   46777777765543322  23469999999999887 78999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      |..||.+.....   .+..  +..+                                              ......++.
T Consensus       251 g~~~~~~~~~~~---~~~~--~~~~----------------------------------------------~~~~~~~~~  279 (311)
T 3p1a_A          251 NMELPHGGEGWQ---QLRQ--GYLP----------------------------------------------PEFTAGLSS  279 (311)
T ss_dssp             TCCCCSSHHHHH---HHTT--TCCC----------------------------------------------HHHHTTSCH
T ss_pred             CCCCCCCccHHH---HHhc--cCCC----------------------------------------------cccccCCCH
Confidence            977765432211   1100  0011                                              011234577


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      ++.+||.+||+.||++|||++|+++||||++
T Consensus       280 ~l~~li~~~L~~dP~~Rpt~~ell~hp~~~~  310 (311)
T 3p1a_A          280 ELRSVLVMMLEPDPKLRATAEALLALPVLRQ  310 (311)
T ss_dssp             HHHHHHHHHSCSSTTTSCCHHHHHTSGGGSC
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHhCccccC
Confidence            9999999999999999999999999999986

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=3.1e-50  Score=381.48  Aligned_cols=262  Identities=27%  Similarity=0.477  Sum_probs=221.4

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-------hHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      +.+.++|++.+.||+|+||.||+|++..+++.||+|++.....       ..+.+.+|+.+++.+.|+++     +++++
T Consensus         8 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~   82 (321)
T 2a2a_A            8 QKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNV-----ITLHD   82 (321)
T ss_dssp             SCHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTB-----CCEEE
T ss_pred             hhhhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCc-----ceEEE
Confidence            4556789999999999999999999999999999999875321       35678899999999988877     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      ++.+.+..++||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.       
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~-------  153 (321)
T 2a2a_A           83 VYENRTDVVLILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNI-------  153 (321)
T ss_dssp             EEECSSEEEEEECCCCSCBHHHHHHTCS--CEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTS-------
T ss_pred             EEecCCEEEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCC-------
Confidence            999999999999999 899999998754  7999999999999999999999999999999999999976541       


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                      ....++|+|||++......  .....||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       154 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p  217 (321)
T 2a2a_A          154 ----------------PIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP  217 (321)
T ss_dssp             ----------------SSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCS
T ss_pred             ----------------CcCCEEEccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCC
Confidence                            1225888888888654432  2345799999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+....+....+.......+..                                              .....+..+.+
T Consensus       218 f~~~~~~~~~~~i~~~~~~~~~~----------------------------------------------~~~~~~~~~~~  251 (321)
T 2a2a_A          218 FLGDTKQETLANITSVSYDFDEE----------------------------------------------FFSHTSELAKD  251 (321)
T ss_dssp             SCCSSHHHHHHHHHTTCCCCCHH----------------------------------------------HHTTCCHHHHH
T ss_pred             CCCCCHHHHHHHHHhcccccChh----------------------------------------------hhcccCHHHHH
Confidence            99887776666554433222211                                              12345678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||.+||+.||++|||++|+++||||+..
T Consensus       252 li~~~l~~dp~~Rps~~e~l~hp~~~~~  279 (321)
T 2a2a_A          252 FIRKLLVKETRKRLTIQEALRHPWITPV  279 (321)
T ss_dssp             HHHTTSCSSTTTSCCHHHHHHSTTTSCS
T ss_pred             HHHHHcCCChhhCcCHHHHhcCccccCC
Confidence            9999999999999999999999999863

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.4e-50  Score=391.45  Aligned_cols=303  Identities=27%  Similarity=0.460  Sum_probs=224.3

Q ss_pred             CCceeeecCC---ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCC
Q 013941           79 DGHYVFAIGE---NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGG  152 (433)
Q Consensus        79 ~~~~~~~~~~---~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~  152 (433)
                      ..+|.+.+++   .+.++|++++.||+|+||.||+|++..+++.||||++...   ......+.+|+.+++.++|+||  
T Consensus         9 ~~~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni--   86 (371)
T 2xrw_A            9 NNFYSVEIGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI--   86 (371)
T ss_dssp             GGEEEEEETTEEEEEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTB--
T ss_pred             CcceEeecCCcccchhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCc--
Confidence            4566777776   3568999999999999999999999999999999998643   2344667889999999988877  


Q ss_pred             cceeEecceeccCC------eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEE
Q 013941          153 TRCVQIRNWFDYRN------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENIL  226 (433)
Q Consensus       153 ~~~v~~~~~~~~~~------~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIl  226 (433)
                         +++++++...+      .+|+||||+.++|.+++..    .+++..+..++.||+.||+|||++||+||||||+|||
T Consensus        87 ---v~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl  159 (371)
T 2xrw_A           87 ---IGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV  159 (371)
T ss_dssp             ---CCEEEEECSCCSTTTCCEEEEEEECCSEEHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE
T ss_pred             ---cceEEeeccccccccccceEEEEEcCCCCHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEE
Confidence               99999887654      8999999998899998863    5899999999999999999999999999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHH
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSV  304 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  304 (433)
                      ++.++                           .+||+|||++......  .....||+.|+|||++.+..++.++|||||
T Consensus       160 ~~~~~---------------------------~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  212 (371)
T 2xrw_A          160 VKSDC---------------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSV  212 (371)
T ss_dssp             ECTTS---------------------------CEEECCCCC----------------CTTCCHHHHTTCCCCTTHHHHHH
T ss_pred             EcCCC---------------------------CEEEEEeecccccccccccCCceecCCccCHHHhcCCCCCchHhHHHH
Confidence            97655                           5677777777654332  233589999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhh
Q 013941          305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI  384 (433)
Q Consensus       305 G~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (433)
                      ||++|+|++|..||.+.+..+.+..+.+..+..+..+..........+........  ..     ...........+ ..
T Consensus       213 G~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~-~~  284 (371)
T 2xrw_A          213 GCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYA--GY-----SFEKLFPDVLFP-AD  284 (371)
T ss_dssp             HHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCC--CC-----CHHHHSCGGGSC-CS
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCcccc--cc-----chhhhcccccCc-cc
Confidence            99999999999999999998888888888777766655443333222222111000  00     000000000000 00


Q ss_pred             hhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       385 ~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .......+.++++||.+||+.||++|||++|+|+||||+..
T Consensus       285 ~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  325 (371)
T 2xrw_A          285 SEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW  325 (371)
T ss_dssp             SHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             ccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchhhh
Confidence            00011225689999999999999999999999999999864

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=4.3e-50  Score=388.08  Aligned_cols=293  Identities=28%  Similarity=0.486  Sum_probs=232.6

Q ss_pred             CCCCCceeeecCC---ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCC
Q 013941           76 DDKDGHYVFAIGE---NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHD  149 (433)
Q Consensus        76 ~~~~~~~~~~~~~---~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~  149 (433)
                      ....+.|......   .+.++|.+.+.||+|+||.||+|++..+|+.||||++...   ......+.+|+.+++.++|+|
T Consensus        23 ~~~~g~~~~~~~~~~~~l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n  102 (371)
T 4exu_A           23 IRKKGFYKQDVNKTAWELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHEN  102 (371)
T ss_dssp             SSCTTEEEEEETTEEEEEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTT
T ss_pred             eccccceeeeeccceecccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCC
Confidence            3456677666654   3678999999999999999999999999999999999753   234567788999999999887


Q ss_pred             CCCcceeEecceeccCCeE------EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCC
Q 013941          150 IGGTRCVQIRNWFDYRNHI------CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPE  223 (433)
Q Consensus       150 i~~~~~v~~~~~~~~~~~~------~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~  223 (433)
                      +     +++++++...+..      |+||||++++|.+++..    .+++..++.++.||+.||+|||++||+||||||+
T Consensus       103 i-----v~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~  173 (371)
T 4exu_A          103 V-----IGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGM----EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPG  173 (371)
T ss_dssp             B-----CCCSEEECSCSSSTTCCCCEEEEECCCEEHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGG
T ss_pred             c-----hhhhhheeccCCcccceeEEEEEccccccHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHH
Confidence            7     9999999876654      99999998899888743    5999999999999999999999999999999999


Q ss_pred             cEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHH
Q 013941          224 NILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLW  302 (433)
Q Consensus       224 NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Diw  302 (433)
                      |||++.++                           .+||+|||++...........||+.|+|||++.+ ..++.++|||
T Consensus       174 NIll~~~~---------------------------~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Diw  226 (371)
T 4exu_A          174 NLAVNEDC---------------------------ELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIW  226 (371)
T ss_dssp             GEEECTTC---------------------------CEEECSTTCC--------CTTCCCTTSCHHHHSCCSCCCTTHHHH
T ss_pred             HeEECCCC---------------------------CEEEEecCcccccccCcCCcccCccccCHHHhcCCCCCCcHHhHH
Confidence            99996544                           5788888888766666666789999999999987 6789999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhc-C-c
Q 013941          303 SVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL-R-L  380 (433)
Q Consensus       303 SlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~  380 (433)
                      ||||++|+|++|..||.+.+..+.+..+....+.++..+...........                     ..+.. . .
T Consensus       227 slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~  285 (371)
T 4exu_A          227 SVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKS---------------------YIQSLPQTP  285 (371)
T ss_dssp             HHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHH---------------------HHHHSCCCC
T ss_pred             HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhh---------------------hhhccCCCc
Confidence            99999999999999999999999999999988888776544322111100                     00000 0 0


Q ss_pred             hhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       381 ~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ..........+++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       286 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~  330 (371)
T 4exu_A          286 RKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPF  330 (371)
T ss_dssp             CCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTT
T ss_pred             chhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCcccccC
Confidence            011112234568899999999999999999999999999999864

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.3e-50  Score=397.67  Aligned_cols=255  Identities=25%  Similarity=0.396  Sum_probs=212.9

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ..++|+++++||+|+||+||+|++..+++.||+|++++...    ....+.+|+.++..+.|++|     +++++++.+.
T Consensus        72 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~I-----v~l~~~~~~~  146 (437)
T 4aw2_A           72 HREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWI-----TTLHYAFQDD  146 (437)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTB-----CCEEEEEECS
T ss_pred             ChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCE-----EEEEEEEeeC
Confidence            34689999999999999999999999999999999975321    22337789999999988877     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +.+|+||||| +|+|.+++.... ..+++..++.++.||+.||+|||++|||||||||+|||++.+|             
T Consensus       147 ~~~~lV~Ey~~gg~L~~~l~~~~-~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g-------------  212 (437)
T 4aw2_A          147 NNLYLVMDYYVGGDLLTLLSKFE-DRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNG-------------  212 (437)
T ss_dssp             SEEEEEECCCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS-------------
T ss_pred             CEEEEEEecCCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCC-------------
Confidence            9999999999 999999998642 3799999999999999999999999999999999999997665             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhh-----CCCCCccchHHHHHHHHHHHHhCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~-----~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                    .+||+|||++.......    ...+||+.|+|||++.     ...++.++|||||||++|||++|+
T Consensus       213 --------------~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~  278 (437)
T 4aw2_A          213 --------------HIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGE  278 (437)
T ss_dssp             --------------CEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSS
T ss_pred             --------------CEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCC
Confidence                          46777777665433221    2358999999999997     456899999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHh--cCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          316 ALFQTHENLEHLAMMERVL--GPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      .||.+.+..+....+....  ..+|.                                               ....+++
T Consensus       279 ~Pf~~~~~~~~~~~i~~~~~~~~~p~-----------------------------------------------~~~~~s~  311 (437)
T 4aw2_A          279 TPFYAESLVETYGKIMNHKERFQFPT-----------------------------------------------QVTDVSE  311 (437)
T ss_dssp             CTTCCSSHHHHHHHHHTHHHHCCCCS-----------------------------------------------SCCCSCH
T ss_pred             CCCCCCChhHHHHhhhhccccccCCc-----------------------------------------------ccccCCH
Confidence            9999888777766664321  11111                                               1134578


Q ss_pred             HHHHHHHHhcccCCCC--CCCHHHHhcCCCCCC
Q 013941          394 DLIDLLQGLLRYDPAE--RLKAREALRHPFFTR  424 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~--R~ta~ell~hp~f~~  424 (433)
                      ++++||.+||+.+|++  |++++|+++||||++
T Consensus       312 ~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff~~  344 (437)
T 4aw2_A          312 NAKDLIRRLICSREHRLGQNGIEDFKKHPFFSG  344 (437)
T ss_dssp             HHHHHHHTTSSCGGGCTTTTTTHHHHTSGGGTT
T ss_pred             HHHHHHHHHhcccccccCCCCHHHHhCCCccCC
Confidence            9999999999999988  999999999999985

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=9.9e-50  Score=376.22  Aligned_cols=282  Identities=31%  Similarity=0.561  Sum_probs=220.6

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|++++.||+|+||+||+|++..+++.||+|++....   ...+.+.+|+.++++++|+|+     +++++++...+.
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~   76 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNL-----VNLLEVFRRKRR   76 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEEETTE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCc-----cchhheeecCCe
Confidence            368999999999999999999999999999999986433   234567789999999998877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .++||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus        77 ~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~---------------  139 (311)
T 4agu_A           77 LHLVFEYCDHTVLHELDRYQR--GVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHS---------------  139 (311)
T ss_dssp             EEEEEECCSEEHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---------------
T ss_pred             EEEEEEeCCCchHHHHHhhhc--CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCC---------------
Confidence            99999999 778888876554  699999999999999999999999999999999999996554               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                  .+||+|||++......   .....||..|+|||++.+ ..++.++|||||||++|+|++|..||.+..
T Consensus       140 ------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  207 (311)
T 4agu_A          140 ------------VIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKS  207 (311)
T ss_dssp             ------------CEEECCCTTCEECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ------------CEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC
Confidence                        5777888877654322   233578999999999987 568999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+....+....+..+..........  .++. +.  ..+......              ........++.++.+||.+|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~--~~~~~~~~~--------------~~~~~~~~~~~~~~~li~~~  268 (311)
T 4agu_A          208 DVDQLYLIRKTLGDLIPRHQQVFSTN--QYFS-GV--KIPDPEDME--------------PLELKFPNISYPALGLLKGC  268 (311)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHTC--GGGT-TC--CCCCCSSCC--------------CHHHHCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccccccccc--cccc-cC--cCCCccccc--------------hhhhhcccccHHHHHHHHHH
Confidence            99998888888887765443222111  1111 10  111100000              00111245678899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCC
Q 013941          403 LRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |+.||++|||++|+++||||++.
T Consensus       269 L~~dP~~Rpt~~ell~hp~f~~~  291 (311)
T 4agu_A          269 LHMDPTERLTCEQLLHHPYFENI  291 (311)
T ss_dssp             CCSSTTTSCCHHHHHTSGGGTTC
T ss_pred             ccCChhhcCCHHHHhcChHHHhc
Confidence            99999999999999999999975

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=2.3e-50  Score=383.20  Aligned_cols=251  Identities=25%  Similarity=0.413  Sum_probs=205.8

Q ss_pred             CCCeEEeccccccccEEEEEEEec---CCCcEEEEEEeccch-----hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDN---EKKELVAIKIVRSIN-----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      .++|++.+.||+|+||.||+|++.   .+++.||+|++++..     .....+.+|+.+++.++|+||     +++++++
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~   90 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI-----VDLIYAF   90 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTB-----CCEEEEE
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCc-----cceeEEE
Confidence            357999999999999999999985   688999999997532     233456789999999988877     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      .+.+.+|+||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.+|          
T Consensus        91 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~----------  158 (327)
T 3a62_A           91 QTGGKLYLILEYLSGGELFMQLEREG--IFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQG----------  158 (327)
T ss_dssp             ECSSCEEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTS----------
T ss_pred             EcCCEEEEEEeCCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCC----------
Confidence            9999999999999 899999998765  699999999999999999999999999999999999997655          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                       .+||+|||++.....   .....+||+.|+|||++.+..++.++|||||||++|+|++|..||
T Consensus       159 -----------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf  221 (327)
T 3a62_A          159 -----------------HVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPF  221 (327)
T ss_dssp             -----------------CEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             -----------------cEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCC
Confidence                             467777776654221   123457999999999999989999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.+.......+......+|                                                  ..++.++.+|
T Consensus       222 ~~~~~~~~~~~i~~~~~~~p--------------------------------------------------~~~~~~~~~l  251 (327)
T 3a62_A          222 TGENRKKTIDKILKCKLNLP--------------------------------------------------PYLTQEARDL  251 (327)
T ss_dssp             CCSSHHHHHHHHHHTCCCCC--------------------------------------------------TTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhCCCCCC--------------------------------------------------CCCCHHHHHH
Confidence            98877766665544322222                                                  2346789999


Q ss_pred             HHHhcccCCCCCC-----CHHHHhcCCCCCCC
Q 013941          399 LQGLLRYDPAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       399 i~~~L~~dP~~R~-----ta~ell~hp~f~~~  425 (433)
                      |.+||+.||++||     +++|+++||||++.
T Consensus       252 i~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~  283 (327)
T 3a62_A          252 LKKLLKRNAASRLGAGPGDAGEVQAHPFFRHI  283 (327)
T ss_dssp             HHHHSCSCGGGSTTSSTTTHHHHHHSGGGSSC
T ss_pred             HHHHHhcCHhhccCCCCCCHHHHHcCCcccCC
Confidence            9999999999999     89999999999863

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.2e-50  Score=390.72  Aligned_cols=281  Identities=31%  Similarity=0.552  Sum_probs=221.6

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec------
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD------  163 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~------  163 (433)
                      ..++|++.+.||+|+||+||+|++..+++.||||++......   ..+|+.+++.++|+||     +++++++.      
T Consensus         5 ~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~---~~~E~~il~~l~hpnI-----v~l~~~~~~~~~~~   76 (383)
T 3eb0_A            5 SSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY---KNRELDIMKVLDHVNI-----IKLVDYFYTTGDEE   76 (383)
T ss_dssp             -CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS---CCHHHHHHTTCCCTTB-----CCEEEEEEEC----
T ss_pred             ccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch---HHHHHHHHHHcCCCCc-----cchhheeeecCccc
Confidence            356899999999999999999999999999999998654332   3469999999988877     99988873      


Q ss_pred             --------------------------------cCCeEEEEEccCCCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHH
Q 013941          164 --------------------------------YRNHICIVFEKLGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAF  209 (433)
Q Consensus       164 --------------------------------~~~~~~lv~e~~~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~  209 (433)
                                                      ....+++||||+.++|.+.+..  .....+++..++.++.||+.||+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~  156 (383)
T 3eb0_A           77 PKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGF  156 (383)
T ss_dssp             ---------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence                                            3445899999998898888763  223479999999999999999999


Q ss_pred             HHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccch
Q 013941          210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAP  287 (433)
Q Consensus       210 LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aP  287 (433)
                      ||++||+||||||+|||++.                          .+..+||+|||++.....  ......||+.|+||
T Consensus       157 LH~~gi~H~Dikp~Nil~~~--------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aP  210 (383)
T 3eb0_A          157 IHSLGICHRDIKPQNLLVNS--------------------------KDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAP  210 (383)
T ss_dssp             HHTTTEECSCCCGGGEEEET--------------------------TTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCH
T ss_pred             HHHCcCccCccCHHHEEEcC--------------------------CCCcEEEEECCCCcccCCCCCCcCcccCCCccCH
Confidence            99999999999999999963                          223578888888865432  23345789999999


Q ss_pred             hhhhCCC-CCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCC
Q 013941          288 EVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGAT  366 (433)
Q Consensus       288 E~~~~~~-~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (433)
                      |++.+.. ++.++|||||||++|+|++|+.||.+.+..+.+..+.+..+.++...+........       ...++....
T Consensus       211 E~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~-------~~~~~~~~~  283 (383)
T 3eb0_A          211 ELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYT-------EVRFPTLKA  283 (383)
T ss_dssp             HHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC---------CCCCCCCC
T ss_pred             HHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccc-------cccCCccCc
Confidence            9998754 89999999999999999999999999999999999999999887665443322111       111111110


Q ss_pred             chhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          367 SRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                                    ...........+.++.+||.+||+.||++|||+.|+|+||||++.
T Consensus       284 --------------~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  328 (383)
T 3eb0_A          284 --------------KDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHL  328 (383)
T ss_dssp             --------------CCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHH
T ss_pred             --------------ccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHH
Confidence                          011112234567899999999999999999999999999999853

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=2.6e-50  Score=392.18  Aligned_cols=308  Identities=19%  Similarity=0.204  Sum_probs=212.9

Q ss_pred             CCeEEecccccc--ccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEG--TFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G--~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++++.||+|  +||.||+|++..+++.||||++....   ...+.+.+|+.+++.++|+||     +++++++.+.+
T Consensus        25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~   99 (389)
T 3gni_B           25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNI-----VPYRATFIADN   99 (389)
T ss_dssp             GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEEETT
T ss_pred             CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCC-----CcEeEEEEECC
Confidence            479999999999  99999999999999999999997542   344667789999999998877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||| +++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|||.+.   
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~---  176 (389)
T 3gni_B          100 ELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNL---  176 (389)
T ss_dssp             EEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCE---
T ss_pred             EEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccce---
Confidence            999999999 8999999987655579999999999999999999999999999999999999888777666666532   


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccc-cCCCcccccCCcccchhhhhC--CCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFE-HQDHSYVVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~-~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                     .+.+.|..... ........||+.|+|||++.+  ..++.++|||||||++|+|++|+.||.+.+
T Consensus       177 ---------------~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  241 (389)
T 3gni_B          177 ---------------SMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMP  241 (389)
T ss_dssp             ---------------ECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             ---------------eeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCC
Confidence                           22222222111 112233588999999999988  578999999999999999999999998766


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHH-hcCchhhhhhccCCchHHHHHHHHH
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK-LLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      .......+...  ..+... .........+...........  ........... ..............++.++.+||.+
T Consensus       242 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~  316 (389)
T 3gni_B          242 ATQMLLEKLNG--TVPCLL-DTSTIPAEELTMSPSRSVANS--GLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQ  316 (389)
T ss_dssp             STTHHHHC-------------------------------------------------------------CCHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCCccc-ccccccccccccccccccccc--ccccccccCccccccCCCCCCccccccCHHHHHHHHH
Confidence            65544332221  111000 000000000000000000000  00000000000 0000001112334568899999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||+.||++|||++|+|+||||++...
T Consensus       317 ~L~~dP~~Rpta~ell~hp~f~~~~~  342 (389)
T 3gni_B          317 CLQRNPDARPSASTLLNHSFFKQIKR  342 (389)
T ss_dssp             HTCSCTTTSCCHHHHTTSGGGGGC--
T ss_pred             HhhcCcccCCCHHHHhcCHHHHHHhh
Confidence            99999999999999999999997543

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=2.7e-50  Score=389.28  Aligned_cols=251  Identities=23%  Similarity=0.433  Sum_probs=208.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|++++.||+|+||.||+|++..+++.||+|++.+..    .....+.+|+.+++.++|++|     +++++++.+.+
T Consensus        14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~I-----v~l~~~~~~~~   88 (384)
T 4fr4_A           14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFL-----VNLWYSFQDEE   88 (384)
T ss_dssp             GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTB-----CCEEEEEECSS
T ss_pred             hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCC-----CcEEEEEEeCC
Confidence            368999999999999999999999999999999987532    234667889999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ |++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.+|              
T Consensus        89 ~~~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g--------------  152 (384)
T 4fr4_A           89 DMFMVVDLLLGGDLRYHLQQNV--HFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHG--------------  152 (384)
T ss_dssp             EEEEEECCCTTEEHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS--------------
T ss_pred             EEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCC--------------
Confidence            999999999 999999998764  799999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhC---CCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILG---LGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                   .+||+|||++.....  .....+||+.|+|||++.+   ..++.++|||||||++|+|++|..||..
T Consensus       153 -------------~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~  219 (384)
T 4fr4_A          153 -------------HVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHI  219 (384)
T ss_dssp             -------------CEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             -------------CEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCC
Confidence                         567777777765432  2244689999999999974   4589999999999999999999999975


Q ss_pred             CChHH---HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          321 HENLE---HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       321 ~~~~~---~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      .....   ....+......                                                  ....++.++.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------~p~~~s~~~~~  249 (384)
T 4fr4_A          220 RSSTSSKEIVHTFETTVVT--------------------------------------------------YPSAWSQEMVS  249 (384)
T ss_dssp             CTTSCHHHHHHHHHHCCCC--------------------------------------------------CCTTSCHHHHH
T ss_pred             CCCccHHHHHHHHhhcccC--------------------------------------------------CCCcCCHHHHH
Confidence            43322   22222111111                                                  12345778999


Q ss_pred             HHHHhcccCCCCCCC-HHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLK-AREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~t-a~ell~hp~f~~~  425 (433)
                      ||.+||+.||++||+ ++++++||||++.
T Consensus       250 li~~lL~~dP~~R~s~~~~l~~hp~f~~~  278 (384)
T 4fr4_A          250 LLKKLLEPNPDQRFSQLSDVQNFPYMNDI  278 (384)
T ss_dssp             HHHHHSCSSGGGSCCSHHHHHTSGGGTTC
T ss_pred             HHHHHhcCCHhHhcccHHHHHcChhhhcC
Confidence            999999999999998 9999999999863

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=3.3e-50  Score=387.82  Aligned_cols=249  Identities=26%  Similarity=0.402  Sum_probs=201.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh----hHHHHHHHHHH-HHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK----YREAAMIEIDV-LQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~-l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++++.||+|+||.||+|+++.+++.||||++++...    ....+..|..+ ++.+.|     ++++++++++.+.+
T Consensus        38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~h-----p~Iv~l~~~~~~~~  112 (373)
T 2r5t_A           38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKH-----PFLVGLHFSFQTAD  112 (373)
T ss_dssp             GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCC-----TTBCCEEEEEECSS
T ss_pred             hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCC-----CCCCCEEEEEEeCC
Confidence            469999999999999999999999999999999975432    22334445544 233444     55599999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ |++|.+++.+..  .+++..++.++.||+.||+|||++||+||||||+|||++.+|              
T Consensus       113 ~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g--------------  176 (373)
T 2r5t_A          113 KLYFVLDYINGGELFYHLQRER--CFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQG--------------  176 (373)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS--------------
T ss_pred             EEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCC--------------
Confidence            999999999 999999998764  799999999999999999999999999999999999997666              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   .+||+|||++....   ......+||+.|+|||++.+..++.++|||||||++|||++|..||.+.+
T Consensus       177 -------------~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~  243 (373)
T 2r5t_A          177 -------------HIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN  243 (373)
T ss_dssp             -------------CEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB
T ss_pred             -------------CEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence                         45666666665422   12344689999999999999999999999999999999999999999887


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+....+......                                                  ....++.++.+||.+|
T Consensus       244 ~~~~~~~i~~~~~~--------------------------------------------------~~~~~~~~~~~li~~l  273 (373)
T 2r5t_A          244 TAEMYDNILNKPLQ--------------------------------------------------LKPNITNSARHLLEGL  273 (373)
T ss_dssp             HHHHHHHHHHSCCC--------------------------------------------------CCSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccC--------------------------------------------------CCCCCCHHHHHHHHHH
Confidence            77666555432111                                                  1134577899999999


Q ss_pred             cccCCCCCCCH----HHHhcCCCCCC
Q 013941          403 LRYDPAERLKA----REALRHPFFTR  424 (433)
Q Consensus       403 L~~dP~~R~ta----~ell~hp~f~~  424 (433)
                      |+.||++|+++    +++++||||+.
T Consensus       274 L~~dp~~R~~~~~~~~~i~~h~~f~~  299 (373)
T 2r5t_A          274 LQKDRTKRLGAKDDFMEIKSHVFFSL  299 (373)
T ss_dssp             TCSSGGGSTTTTTTHHHHHTSGGGTT
T ss_pred             cccCHHhCCCCCCCHHHHhCCccccC
Confidence            99999999986    69999999986

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=4.7e-50  Score=387.53  Aligned_cols=257  Identities=29%  Similarity=0.445  Sum_probs=210.9

Q ss_pred             CCeEE--eccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRI--LSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~--~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ..|.+  .+.||+|+||.||+|++..+|+.||+|+++... ...+.+.+|+.++++++|+||     +++++++.+.+.+
T Consensus        87 ~~~~~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnI-----v~~~~~~~~~~~~  161 (373)
T 2x4f_A           87 SFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANL-----IQLYDAFESKNDI  161 (373)
T ss_dssp             GTEEEEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEEECSSEE
T ss_pred             cceeeecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCC-----CeEEEEEEECCEE
Confidence            34555  678999999999999999999999999997543 445678899999999988777     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||+..+                 
T Consensus       162 ~lv~E~~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~-----------------  223 (373)
T 2x4f_A          162 VLVMEYVDGGELFDRIIDES-YNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNR-----------------  223 (373)
T ss_dssp             EEEEECCTTCEEHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEET-----------------
T ss_pred             EEEEeCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecC-----------------
Confidence            9999999 899999887543 368999999999999999999999999999999999999542                 


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                              ....+||+|||++......  .....||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+..+
T Consensus       224 --------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~  295 (373)
T 2x4f_A          224 --------DAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAE  295 (373)
T ss_dssp             --------TTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             --------CCCcEEEEeCCCceecCCccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence                    2335788888888765432  233579999999999998889999999999999999999999999888777


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+......++.                                              .....++.++.+||.+||+.
T Consensus       296 ~~~~i~~~~~~~~~----------------------------------------------~~~~~~~~~~~~li~~~L~~  329 (373)
T 2x4f_A          296 TLNNILACRWDLED----------------------------------------------EEFQDISEEAKEFISKLLIK  329 (373)
T ss_dssp             HHHHHHHTCCCSCS----------------------------------------------GGGTTSCHHHHHHHHTTSCS
T ss_pred             HHHHHHhccCCCCh----------------------------------------------hhhccCCHHHHHHHHHHcCC
Confidence            76666543222211                                              11234577999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCC
Q 013941          406 DPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||++|||++|+|+||||++.
T Consensus       330 dp~~Rps~~e~l~hp~~~~~  349 (373)
T 2x4f_A          330 EKSWRISASEALKHPWLSDH  349 (373)
T ss_dssp             SGGGSCCHHHHHHSHHHHCH
T ss_pred             ChhhCCCHHHHhcCcCcCCC
Confidence            99999999999999999864

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=3.8e-50  Score=372.73  Aligned_cols=263  Identities=24%  Similarity=0.424  Sum_probs=221.1

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc-hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .+.++|++.+.||+|+||.||+|.+..+++.||+|++... ....+.+.+|+.++++++|+|+     +++++++.+.+.
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~   80 (277)
T 3f3z_A            6 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNI-----IRLYETFEDNTD   80 (277)
T ss_dssp             CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTB-----CCEEEEEECSSE
T ss_pred             hhhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCE-----eeEEEEEecCCe
Confidence            3456899999999999999999999999999999998753 2345678899999999988777     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .++||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||+..+                
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~----------------  142 (277)
T 3f3z_A           81 IYLVMELCTGGELFERVVHKR--VFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTD----------------  142 (277)
T ss_dssp             EEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSS----------------
T ss_pred             EEEEEeccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecC----------------
Confidence            99999999 889999998765  69999999999999999999999999999999999999432                


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                              +.+..++|+|||++......  .....||+.|+|||++.+. ++.++|||||||++|+|++|..||......
T Consensus       143 --------~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~  213 (277)
T 3f3z_A          143 --------SPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDS  213 (277)
T ss_dssp             --------STTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             --------CCCCcEEEEecccceeccCccchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHH
Confidence                    13446888999988654332  2345799999999998764 899999999999999999999999988877


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+.......|..                                              ....+++.+.+||.+||+
T Consensus       214 ~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~li~~~l~  247 (277)
T 3f3z_A          214 EVMLKIREGTFTFPEK----------------------------------------------DWLNVSPQAESLIRRLLT  247 (277)
T ss_dssp             HHHHHHHHCCCCCCHH----------------------------------------------HHTTSCHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCCCCch----------------------------------------------hhhcCCHHHHHHHHHHcc
Confidence            7666665543333321                                              112456789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          405 YDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      .||++|||+.|+++||||++.....
T Consensus       248 ~dp~~R~s~~~~l~h~~~~~~~~~~  272 (277)
T 3f3z_A          248 KSPKQRITSLQALEHEWFEKQLSSS  272 (277)
T ss_dssp             SSTTTSCCHHHHTTSHHHHHHHCCS
T ss_pred             CChhhCcCHHHHhcCHHHhcccccc
Confidence            9999999999999999999865543

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.7e-50  Score=400.92  Aligned_cols=256  Identities=27%  Similarity=0.386  Sum_probs=215.6

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      ....++|.+.+.||+|+||.||+|++..+|+.||||++....    .....+.+|+.+++.++|+||     +++++++.
T Consensus        12 ~~~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnI-----v~l~~~~~   86 (476)
T 2y94_A           12 RVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHI-----IKLYQVIS   86 (476)
T ss_dssp             CCEETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTB-----CCEEEEEE
T ss_pred             CceecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCC-----CcEEEEEE
Confidence            334468999999999999999999999999999999997532    234578899999999988777     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      +.+.+|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++           
T Consensus        87 ~~~~~~lv~E~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~-----------  153 (476)
T 2y94_A           87 TPSDIFMVMEYVSGGELFDYICKNG--RLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHM-----------  153 (476)
T ss_dssp             CSSEEEEEEECCSSEEHHHHTTSSS--SCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTC-----------
T ss_pred             ECCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCC-----------
Confidence            999999999999 999999997654  799999999999999999999999999999999999997655           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCC-CccchHHHHHHHHHHHHhCCCCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                      .+||+|||++......  ....+||+.|+|||++.+..+ +.++|||||||++|+|++|..||.
T Consensus       154 ----------------~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~  217 (476)
T 2y94_A          154 ----------------NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFD  217 (476)
T ss_dssp             ----------------CEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ----------------CeEEEeccchhhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCC
Confidence                            4677777777654332  234589999999999998775 689999999999999999999998


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      +.+.......+.......                                                  ...+++++.+||
T Consensus       218 ~~~~~~~~~~i~~~~~~~--------------------------------------------------p~~~s~~~~~Li  247 (476)
T 2y94_A          218 DDHVPTLFKKICDGIFYT--------------------------------------------------PQYLNPSVISLL  247 (476)
T ss_dssp             CSSSHHHHHHHHTTCCCC--------------------------------------------------CTTCCHHHHHHH
T ss_pred             CCCHHHHHHHHhcCCcCC--------------------------------------------------CccCCHHHHHHH
Confidence            877666555443322111                                                  123467899999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          400 QGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .+||+.||++|||++|+++||||++...
T Consensus       248 ~~~L~~dP~~Rpt~~eil~hp~~~~~~~  275 (476)
T 2y94_A          248 KHMLQVDPMKRATIKDIREHEWFKQDLP  275 (476)
T ss_dssp             HHHTCSSTTTSCCHHHHHTCHHHHTTCC
T ss_pred             HHHcCCCchhCcCHHHHHhCHHhhhcCc
Confidence            9999999999999999999999987643

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.7e-50  Score=391.89  Aligned_cols=253  Identities=27%  Similarity=0.395  Sum_probs=209.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|++++.||+|+||.||+|+++.+++.||||++++..    ...+.+.+|..++..+.|++|     +++++++.+.+
T Consensus        60 ~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~I-----v~l~~~~~~~~  134 (412)
T 2vd5_A           60 RDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWI-----TQLHFAFQDEN  134 (412)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTB-----CCEEEEEECSS
T ss_pred             hhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCe-----eeEEEEEeeCC
Confidence            468999999999999999999999999999999997532    223446789999999888777     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ +++|.+++.+.+ ..+++..++.++.||+.||+|||++|||||||||+|||++.+|              
T Consensus       135 ~~~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g--------------  199 (412)
T 2vd5_A          135 YLYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCG--------------  199 (412)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS--------------
T ss_pred             EEEEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCC--------------
Confidence            999999999 999999998653 3699999999999999999999999999999999999997666              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhh-------CCCCCccchHHHHHHHHHHHHhC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVIL-------GLGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~-------~~~~~~~~DiwSlG~il~el~~g  314 (433)
                                   .+||+|||++.......    ...+||+.|+|||++.       +..++.++|||||||++|||++|
T Consensus       200 -------------~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG  266 (412)
T 2vd5_A          200 -------------HIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYG  266 (412)
T ss_dssp             -------------CEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHS
T ss_pred             -------------CEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhC
Confidence                         46666666665433221    2358999999999997       35689999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHh--cCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          315 EALFQTHENLEHLAMMERVL--GPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      +.||.+.+..+....+....  ..+|.                                               ....++
T Consensus       267 ~~Pf~~~~~~~~~~~i~~~~~~~~~p~-----------------------------------------------~~~~~s  299 (412)
T 2vd5_A          267 QTPFYADSTAETYGKIVHYKEHLSLPL-----------------------------------------------VDEGVP  299 (412)
T ss_dssp             SCTTCCSSHHHHHHHHHTHHHHCCCC---------------------------------------------------CCC
T ss_pred             CCCCCCCCHHHHHHHHHhcccCcCCCc-----------------------------------------------cccCCC
Confidence            99999888777666654321  11110                                               113457


Q ss_pred             HHHHHHHHHhcccCCCCC---CCHHHHhcCCCCCC
Q 013941          393 GDLIDLLQGLLRYDPAER---LKAREALRHPFFTR  424 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R---~ta~ell~hp~f~~  424 (433)
                      .++++||.+||+ +|++|   ++++|+++||||++
T Consensus       300 ~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~  333 (412)
T 2vd5_A          300 EEARDFIQRLLC-PPETRLGRGGAGDFRTHPFFFG  333 (412)
T ss_dssp             HHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGTT
T ss_pred             HHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcCC
Confidence            899999999999 99998   49999999999986

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.6e-50  Score=379.33  Aligned_cols=250  Identities=24%  Similarity=0.416  Sum_probs=201.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh---------------------------hHHHHHHHHHHHHH
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---------------------------YREAAMIEIDVLQR  144 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------------------------~~~~~~~E~~~l~~  144 (433)
                      ++|++.+.||+|+||.||+|++..+++.||||++.....                           ..+.+.+|+.++++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   92 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK   92 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred             cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence            679999999999999999999999999999999865321                           12457789999999


Q ss_pred             HHhCCCCCcceeEecceecc--CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCC
Q 013941          145 LARHDIGGTRCVQIRNWFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLK  221 (433)
Q Consensus       145 l~~~~i~~~~~v~~~~~~~~--~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDik  221 (433)
                      ++|+||     +++++++.+  .+.+|+||||+ +++|.+++..   ..+++..++.++.||+.||+|||++||+|||||
T Consensus        93 l~h~~i-----v~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk  164 (298)
T 2zv2_A           93 LDHPNV-----VKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIK  164 (298)
T ss_dssp             CCCTTB-----CCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             CCCCCC-----CeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC
Confidence            988877     999999876  67899999999 8898876543   369999999999999999999999999999999


Q ss_pred             CCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCC---C
Q 013941          222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLG---W  295 (433)
Q Consensus       222 p~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~---~  295 (433)
                      |+|||++.++                           .+||+|||++.......   ....||+.|+|||++.+..   +
T Consensus       165 p~Nil~~~~~---------------------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  217 (298)
T 2zv2_A          165 PSNLLVGEDG---------------------------HIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFS  217 (298)
T ss_dssp             GGGEEECTTS---------------------------CEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEE
T ss_pred             HHHEEECCCC---------------------------CEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCC
Confidence            9999997655                           46777777776543322   2357999999999998765   3


Q ss_pred             CccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHH
Q 013941          296 NYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW  375 (433)
Q Consensus       296 ~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (433)
                      +.++|||||||++|+|++|..||.+.........+.......|                                     
T Consensus       218 ~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~-------------------------------------  260 (298)
T 2zv2_A          218 GKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQALEFP-------------------------------------  260 (298)
T ss_dssp             SHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCC-------------------------------------
T ss_pred             CchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHHHhcccCCCC-------------------------------------
Confidence            7889999999999999999999987765544443332111111                                     


Q ss_pred             HhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          376 KLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                                 ....++.++.+||.+||+.||++|||+.|+++||||++
T Consensus       261 -----------~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~hp~~~~  298 (298)
T 2zv2_A          261 -----------DQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVTR  298 (298)
T ss_dssp             -----------SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTCHHHHC
T ss_pred             -----------CccccCHHHHHHHHHHhhcChhhCCCHHHHhcCccccC
Confidence                       11345778999999999999999999999999999964

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1.1e-49  Score=376.89  Aligned_cols=262  Identities=25%  Similarity=0.412  Sum_probs=205.2

Q ss_pred             CccCCCeEEe-ccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHH-HhCCCCCcceeEecceecc
Q 013941           88 ENLTPRYRIL-SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        88 ~~~~~~y~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..+.++|++. +.||+|+||.||+|++..+++.||||++.... .....+.+|+.++.++ .|+||     +++++++.+
T Consensus         8 ~~~~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i-----~~~~~~~~~   82 (316)
T 2ac3_A            8 GRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNV-----LELIEFFEE   82 (316)
T ss_dssp             CCTTTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTB-----CCEEEEEEE
T ss_pred             cccceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCe-----eeEEEEEee
Confidence            3456789996 78999999999999999999999999997543 3456788999999885 56666     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      .+.+|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.           
T Consensus        83 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~-----------  149 (316)
T 2ac3_A           83 EDRFYLVFEKMRGGSILSHIHKRR--HFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQ-----------  149 (316)
T ss_dssp             TTEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSS-----------
T ss_pred             CCEEEEEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCC-----------
Confidence            99999999999 899999998764  7999999999999999999999999999999999999976542           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC----------CcccccCCcccchhhhhC-----CCCCccchHHHHHHHH
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD----------HSYVVSTRHYRAPEVILG-----LGWNYPCDLWSVGCIL  308 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwSlG~il  308 (433)
                                   ...+||+|||++......          ....+||+.|+|||++.+     ..++.++|||||||++
T Consensus       150 -------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il  216 (316)
T 2ac3_A          150 -------------VSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVIL  216 (316)
T ss_dssp             -------------SCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHH
T ss_pred             -------------cCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHH
Confidence                         234788888877543211          123469999999999975     4578999999999999


Q ss_pred             HHHHhCCCCCCCCChHH---------------HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHH
Q 013941          309 VELCSGEALFQTHENLE---------------HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA  373 (433)
Q Consensus       309 ~el~~g~~pf~~~~~~~---------------~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (433)
                      |+|++|..||.+....+               ....+......+|                                   
T Consensus       217 ~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------------------------  261 (316)
T 2ac3_A          217 YILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFP-----------------------------------  261 (316)
T ss_dssp             HHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCC-----------------------------------
T ss_pred             HHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccC-----------------------------------
Confidence            99999999997654211               1111111100010                                   


Q ss_pred             HHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                                 ......++.++.+||.+||+.||++|||++|+++||||++..
T Consensus       262 -----------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~  303 (316)
T 2ac3_A          262 -----------DKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGCA  303 (316)
T ss_dssp             -----------HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTTCC---
T ss_pred             -----------chhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcChhhcCCC
Confidence                       111234577899999999999999999999999999999753

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=3.1e-50  Score=403.44  Aligned_cols=263  Identities=29%  Similarity=0.497  Sum_probs=219.2

Q ss_pred             ecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecce
Q 013941           85 AIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNW  161 (433)
Q Consensus        85 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~  161 (433)
                      .....+.++|++++.||+|+||+||+|++..+++.||+|++.+..   .....+.+|+.+++.+.|+||     ++++++
T Consensus        30 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~  104 (494)
T 3lij_A           30 SKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNI-----MKLYDF  104 (494)
T ss_dssp             CCBCCHHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTB-----CCEEEE
T ss_pred             cCCCchhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCC-----CeEEEE
Confidence            334456678999999999999999999999999999999987532   335678899999999988877     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      +.+.+.+|+||||| +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++..+         
T Consensus       105 ~~~~~~~~lv~e~~~~g~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~---------  173 (494)
T 3lij_A          105 FEDKRNYYLVMECYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKE---------  173 (494)
T ss_dssp             EECSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSS---------
T ss_pred             EEeCCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCC---------
Confidence            99999999999999 999999988765  699999999999999999999999999999999999996543         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                     ....+||+|||++......  ....+||+.|+|||++.+ .++.++|||||||++|+|++|..||
T Consensus       174 ---------------~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~~~~DiwslG~il~~ll~g~~pf  237 (494)
T 3lij_A          174 ---------------KDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFILLAGYPPF  237 (494)
T ss_dssp             ---------------TTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             ---------------CCCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHcc-cCCCchhHHHHHHHHHHHHhCCCCC
Confidence                           3446899999998765433  234689999999999864 6999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.+..+.+..+......++.                                              ..+..++..+.+|
T Consensus       238 ~~~~~~~~~~~i~~~~~~~~~----------------------------------------------~~~~~~s~~~~~l  271 (494)
T 3lij_A          238 GGQTDQEILRKVEKGKYTFDS----------------------------------------------PEWKNVSEGAKDL  271 (494)
T ss_dssp             CCSSHHHHHHHHHHTCCCCCS----------------------------------------------GGGTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhCCCCCCc----------------------------------------------hhcccCCHHHHHH
Confidence            998887777666554332221                                              1123457789999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |.+||+.||++|||+.|+|+||||++.
T Consensus       272 i~~~L~~dp~~R~s~~e~l~hp~~~~~  298 (494)
T 3lij_A          272 IKQMLQFDSQRRISAQQALEHPWIKEM  298 (494)
T ss_dssp             HHHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred             HHHHCCCChhhCccHHHHhcCcccccC
Confidence            999999999999999999999999864

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=4.5e-50  Score=401.65  Aligned_cols=260  Identities=31%  Similarity=0.534  Sum_probs=220.5

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.++|++++.||+|+||+||+|++..+++.||||++...   ......+.+|+.+++++.|+||     +++++++.+.
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~~~~~   93 (486)
T 3mwu_A           19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNI-----MKLFEILEDS   93 (486)
T ss_dssp             HHHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTB-----CCEEEEEECS
T ss_pred             ChhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCc-----CeEEEEEEcC
Confidence            4557899999999999999999999999999999998642   2345678899999999988877     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +.+|+||||| +++|.+.+....  .+++..++.++.||+.||.|||++||+||||||+|||++..+             
T Consensus        94 ~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~-------------  158 (486)
T 3mwu_A           94 SSFYIVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKE-------------  158 (486)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSS-------------
T ss_pred             CEEEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCC-------------
Confidence            9999999999 999999987765  799999999999999999999999999999999999996533             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                 ....+||+|||++......  ....+||+.|+|||++.+ .++.++|||||||++|+|++|..||.+.+
T Consensus       159 -----------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~  226 (486)
T 3mwu_A          159 -----------KDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN  226 (486)
T ss_dssp             -----------TTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             -----------CCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence                       3456899999988755433  234589999999999986 59999999999999999999999999988


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+.+..+......++.                                              ..+..+++++++||.+|
T Consensus       227 ~~~~~~~i~~~~~~~~~----------------------------------------------~~~~~~s~~~~~li~~~  260 (486)
T 3mwu_A          227 EYDILKRVETGKYAFDL----------------------------------------------PQWRTISDDAKDLIRKM  260 (486)
T ss_dssp             HHHHHHHHHHTCCCSCS----------------------------------------------GGGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCC----------------------------------------------cccCCCCHHHHHHHHHH
Confidence            87777666543222211                                              11234577899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCc
Q 013941          403 LRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      |+.||++|||+.|+|+||||++..
T Consensus       261 L~~dp~~R~t~~~~l~hp~~~~~~  284 (486)
T 3mwu_A          261 LTFHPSLRITATQCLEHPWIQKYS  284 (486)
T ss_dssp             TCSSTTTSCCHHHHHHCHHHHHTC
T ss_pred             cCCChhhCcCHHHHhcCHhhccCc
Confidence            999999999999999999998753

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.7e-50  Score=398.95  Aligned_cols=251  Identities=25%  Similarity=0.435  Sum_probs=206.4

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|++++.||+|+||.||+|++..+++.||||++....    .....+.+|+.+++.++|+||     +++++++.+.+
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~l~~~~~~~~  221 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFL-----TALKYSFQTHD  221 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTS-----CCEEEEEEETT
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeE-----eeEEEEEeeCC
Confidence            468999999999999999999999999999999997532    233456678888888888777     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .+|+||||+ +++|.+++....  .+++..++.++.||+.||+|||+ +||+||||||+|||++.++             
T Consensus       222 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~-------------  286 (446)
T 4ejn_A          222 RLCFVMEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDG-------------  286 (446)
T ss_dssp             EEEEEECCCSSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSS-------------
T ss_pred             EEEEEEeeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCC-------------
Confidence            999999999 899999998765  79999999999999999999998 9999999999999997655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                    .+||+|||++.....   .....+||+.|+|||++.+..++.++|||||||++|||++|..||.+.
T Consensus       287 --------------~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  352 (446)
T 4ejn_A          287 --------------HIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  352 (446)
T ss_dssp             --------------CEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             --------------CEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence                          567777777654222   223468999999999999999999999999999999999999999988


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +.......+......+|                                                  ..+++++.+||.+
T Consensus       353 ~~~~~~~~i~~~~~~~p--------------------------------------------------~~~~~~~~~li~~  382 (446)
T 4ejn_A          353 DHEKLFELILMEEIRFP--------------------------------------------------RTLGPEAKSLLSG  382 (446)
T ss_dssp             SHHHHHHHHHHCCCCCC--------------------------------------------------TTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCC--------------------------------------------------ccCCHHHHHHHHH
Confidence            77666655543222221                                                  2346789999999


Q ss_pred             hcccCCCCCC-----CHHHHhcCCCCCCC
Q 013941          402 LLRYDPAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP~~R~-----ta~ell~hp~f~~~  425 (433)
                      ||+.||++||     |++|+++||||++.
T Consensus       383 ~L~~dP~~R~~~~~~t~~ell~hp~f~~~  411 (446)
T 4ejn_A          383 LLKKDPKQRLGGGSEDAKEIMQHRFFAGI  411 (446)
T ss_dssp             HTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             HcccCHHHhCCCCCCCHHHHHhCccccCC
Confidence            9999999999     99999999999974

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=9.7e-50  Score=382.85  Aligned_cols=285  Identities=27%  Similarity=0.485  Sum_probs=221.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc----
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY----  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~----  164 (433)
                      ++|++++.||+|+||.||+|++..+++.||||++....   .....+.+|+.+++.++|+|+     +++++++..    
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~   91 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV-----VNLIEICRTKASP   91 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTB-----CCEEEEEEEC---
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCc-----ccHhheeeccccc
Confidence            57999999999999999999999999999999986432   234567889999999998877     899888876    


Q ss_pred             ----CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          165 ----RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       165 ----~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                          .+.+|+||||++++|.+.+.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++         
T Consensus        92 ~~~~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~---------  161 (351)
T 3mi9_A           92 YNRCKGSIYLVFDFCEHDLAGLLSNVL-VKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDG---------  161 (351)
T ss_dssp             -----CEEEEEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---------
T ss_pred             cccCCceEEEEEeccCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCC---------
Confidence                45799999999889988887653 4699999999999999999999999999999999999997655         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCcccc-------CCCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHH
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH-------QDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~-------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~  312 (433)
                                        .+||+|||++....       .......||+.|+|||++.+. .++.++|||||||++|+|+
T Consensus       162 ------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell  223 (351)
T 3mi9_A          162 ------------------VLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMW  223 (351)
T ss_dssp             ------------------CEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHH
T ss_pred             ------------------CEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHH
Confidence                              46666666664332       112335789999999999874 5899999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      +|..||.+.........+....+.++...+........  +.   ..........  .......           ....+
T Consensus       224 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~--~~~~~~~-----------~~~~~  285 (351)
T 3mi9_A          224 TRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYEL--YE---KLELVKGQKR--KVKDRLK-----------AYVRD  285 (351)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGG--GT---SSCCCSSCCC--CHHHHHH-----------HHHCC
T ss_pred             hCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchh--hc---cccccccccc--CHHHHhh-----------hccCC
Confidence            99999999999999999999888887655433221110  00   0000000000  0000000           00125


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      +.+.+||.+||+.||++|||++|+|+||||++...
T Consensus       286 ~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  320 (351)
T 3mi9_A          286 PYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPM  320 (351)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSSC
T ss_pred             hHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCCC
Confidence            67899999999999999999999999999997644

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=1e-49  Score=371.53  Aligned_cols=259  Identities=27%  Similarity=0.415  Sum_probs=210.6

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .+.++|++.++||+|+||.||+|++..+++.||+|++....  ...+.+.+|+.++++++|++|     +++++++.+.+
T Consensus        19 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~~~   93 (285)
T 3is5_A           19 TIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNI-----IKIFEVFEDYH   93 (285)
T ss_dssp             CHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTB-----CCEEEEEECSS
T ss_pred             ChhhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchH-----HhHHHheecCC
Confidence            45578999999999999999999999999999999987543  335678899999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          167 HICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ..++||||+ +++|.+++...  ....+++..++.++.||+.||+|||++||+||||||+|||++..+            
T Consensus        94 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~------------  161 (285)
T 3is5_A           94 NMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTS------------  161 (285)
T ss_dssp             EEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSS------------
T ss_pred             eEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCC------------
Confidence            999999999 88999988642  124799999999999999999999999999999999999995422            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                  ....+||+|||++......  .....||+.|+|||++. ..++.++|||||||++|+|++|..||.+.
T Consensus       162 ------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~  228 (285)
T 3is5_A          162 ------------PHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGT  228 (285)
T ss_dssp             ------------TTCCEEECCCCCCCC----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ------------CCCCEEEEeeecceecCCcccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCC
Confidence                        3456899999998754332  23467999999999986 46899999999999999999999999887


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      ...+....+.......+                                               ......++++.+||.+
T Consensus       229 ~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~li~~  261 (285)
T 3is5_A          229 SLEEVQQKATYKEPNYA-----------------------------------------------VECRPLTPQAVDLLKQ  261 (285)
T ss_dssp             SHHHHHHHHHHCCCCCC-----------------------------------------------C--CCCCHHHHHHHHH
T ss_pred             CHHHHHhhhccCCcccc-----------------------------------------------cccCcCCHHHHHHHHH
Confidence            66554433322111100                                               0012346789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      ||+.||++|||+.|+|+||||++
T Consensus       262 ~L~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          262 MLTKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             HTCSCTTTSCCHHHHHTSGGGGC
T ss_pred             HccCChhhCcCHHHHhcCHHhhc
Confidence            99999999999999999999986

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.6e-50  Score=404.92  Aligned_cols=266  Identities=29%  Similarity=0.498  Sum_probs=223.2

Q ss_pred             eeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeE
Q 013941           82 YVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQ  157 (433)
Q Consensus        82 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~  157 (433)
                      +....+..+.++|++.+.||+|+||.||+|++..+++.||||++...    ....+.+.+|+.+++++.|+||     ++
T Consensus        16 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~   90 (484)
T 3nyv_A           16 FVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNI-----MK   90 (484)
T ss_dssp             ---CCCCCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTB-----CC
T ss_pred             eeccCCCcccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCC-----Cc
Confidence            33444556778999999999999999999999999999999998643    2345778899999999988877     99


Q ss_pred             ecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          158 IRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       158 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                      +++++.+.+.+|+||||| +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++..+     
T Consensus        91 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~-----  163 (484)
T 3nyv_A           91 LYEFFEDKGYFYLVGEVYTGGELFDEIISRK--RFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKS-----  163 (484)
T ss_dssp             EEEEEECSSEEEEEECCCCSCBHHHHHHTCS--CCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSS-----
T ss_pred             EEEEEEeCCEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCC-----
Confidence            999999999999999999 999999998765  799999999999999999999999999999999999995422     


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhC
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g  314 (433)
                                         ....+||+|||++.......  ...+||+.|+|||++.+ .++.++|||||||++|+|++|
T Consensus       164 -------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g  223 (484)
T 3nyv_A          164 -------------------KDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSG  223 (484)
T ss_dssp             -------------------TTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHS
T ss_pred             -------------------CCCcEEEEeeeeeEEcccccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHC
Confidence                               34568999999886544332  33589999999999987 699999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      ..||.+.+..+.+..+......++.                                              ..+..++.+
T Consensus       224 ~~pf~~~~~~~~~~~i~~~~~~~~~----------------------------------------------~~~~~~s~~  257 (484)
T 3nyv_A          224 CPPFNGANEYDILKKVEKGKYTFEL----------------------------------------------PQWKKVSES  257 (484)
T ss_dssp             SCSSCCSSHHHHHHHHHHCCCCCCS----------------------------------------------GGGGGSCHH
T ss_pred             CCCCCCCCHHHHHHHHHcCCCCCCC----------------------------------------------cccccCCHH
Confidence            9999998887777666553222211                                              112345778


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          395 LIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +++||.+||+.||++|||+.|+|+||||++.
T Consensus       258 ~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~  288 (484)
T 3nyv_A          258 AKDLIRKMLTYVPSMRISARDALDHEWIQTY  288 (484)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHTSHHHHHH
T ss_pred             HHHHHHHHCCCChhHCcCHHHHhhChhhccc
Confidence            9999999999999999999999999999864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=2.7e-50  Score=382.91  Aligned_cols=274  Identities=23%  Similarity=0.356  Sum_probs=223.7

Q ss_pred             CCCCceeeecCCccCCCeEEe-ccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHh-CCCC
Q 013941           77 DKDGHYVFAIGENLTPRYRIL-SKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLAR-HDIG  151 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~y~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~-~~i~  151 (433)
                      ..++...+..++.+.++|.+. +.||+|+||.||+|++..+++.||+|++....   .....+.+|+.+++.+.+ +++ 
T Consensus        13 ~~~~n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i-   91 (327)
T 3lm5_A           13 LGTENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRV-   91 (327)
T ss_dssp             ---CCCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTB-
T ss_pred             ccchhhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCE-
Confidence            334445566778888999998 89999999999999999999999999987532   335678899999999865 555 


Q ss_pred             CcceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeC
Q 013941          152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSA  230 (433)
Q Consensus       152 ~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~  230 (433)
                          +++++++.+.+.+++||||+ +++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++..
T Consensus        92 ----v~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~  167 (327)
T 3lm5_A           92 ----INLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSI  167 (327)
T ss_dssp             ----CCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCB
T ss_pred             ----EEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecC
Confidence                99999999999999999999 8899999876544679999999999999999999999999999999999999652


Q ss_pred             CcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHH
Q 013941          231 EYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL  308 (433)
Q Consensus       231 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il  308 (433)
                      .                        ....+||+|||++.......  ....||+.|+|||++.+..++.++|||||||++
T Consensus       168 ~------------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  223 (327)
T 3lm5_A          168 Y------------------------PLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIA  223 (327)
T ss_dssp             T------------------------TBCCEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred             C------------------------CCCcEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHH
Confidence            1                        23467888888876544322  335799999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          309 VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       309 ~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      |+|++|..||.+.+..+....+.......+.                                              ...
T Consensus       224 ~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~----------------------------------------------~~~  257 (327)
T 3lm5_A          224 YMLLTHTSPFVGEDNQETYLNISQVNVDYSE----------------------------------------------ETF  257 (327)
T ss_dssp             HHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT----------------------------------------------TTT
T ss_pred             HHHHhCCCCCCCCCchHHHHHHHhcccccCc----------------------------------------------hhh
Confidence            9999999999988877776666554333221                                              112


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ..++..+.+||.+||+.||++|||++|+|+||||++.
T Consensus       258 ~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~~~  294 (327)
T 3lm5_A          258 SSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQW  294 (327)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGCCC
T ss_pred             cccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhhccc
Confidence            3456789999999999999999999999999999864

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=5.9e-50  Score=371.90  Aligned_cols=252  Identities=27%  Similarity=0.452  Sum_probs=212.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....    .....+.+|+.+++.+.|+++     +++++++.+.+.
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~   83 (279)
T 3fdn_A            9 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNI-----LRLYGYFHDATR   83 (279)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTB-----CCEEEEEECSSE
T ss_pred             ccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCC-----cchhheEecCCE
Confidence            57999999999999999999999999999999986432    234567889999999988777     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .++||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus        84 ~~lv~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~---------------  146 (279)
T 3fdn_A           84 VYLILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAG---------------  146 (279)
T ss_dssp             EEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTS---------------
T ss_pred             EEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCC---------------
Confidence            99999999 889999998764  699999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                  .++|+|||++...... .....||+.|+|||++.+..++.++||||||+++|+|++|..||...+...
T Consensus       147 ------------~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~  214 (279)
T 3fdn_A          147 ------------ELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE  214 (279)
T ss_dssp             ------------CEEECSCCEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             ------------CEEEEeccccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH
Confidence                        4677777766443322 233578999999999999899999999999999999999999999877766


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.......|                                                  ..++..+.+||.+||+.
T Consensus       215 ~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~li~~~l~~  244 (279)
T 3fdn_A          215 TYKRISRVEFTFP--------------------------------------------------DFVTEGARDLISRLLKH  244 (279)
T ss_dssp             HHHHHHHTCCCCC--------------------------------------------------TTSCHHHHHHHHHHCCS
T ss_pred             HHHHHHhCCCCCC--------------------------------------------------CcCCHHHHHHHHHHhcc
Confidence            6655544332222                                                  23467899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCcc
Q 013941          406 DPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||++|||++|+++||||+....
T Consensus       245 ~p~~Rps~~e~l~h~~~~~~~~  266 (279)
T 3fdn_A          245 NPSQRPMLREVLEHPWITANSS  266 (279)
T ss_dssp             SGGGSCCHHHHHHCHHHHHHCS
T ss_pred             ChhhCCCHHHHhhCccccCCcc
Confidence            9999999999999999997543

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.4e-49  Score=390.46  Aligned_cols=279  Identities=28%  Similarity=0.487  Sum_probs=219.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc------C
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY------R  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~------~  165 (433)
                      .+|++.+.||+|+||.||+|++..+++.||||++.....   ...+|+++++.++|+||     +++++++..      .
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~E~~il~~l~hpni-----v~l~~~~~~~~~~~~~  125 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR---FKNRELQIMRKLDHCNI-----VRLRYFFYSSGEKKDE  125 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT---SCCHHHHHHHTCCCTTB-----CCEEEEEEEEETTTTE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch---hHHHHHHHHHHcCCCCc-----cceeeEEeccCCCCcc
Confidence            469999999999999999999999999999999865432   23469999999988877     888888743      2


Q ss_pred             CeEEEEEccCCCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          166 NHICIVFEKLGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       166 ~~~~lv~e~~~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ..+++||||+.++|.+.+..  .....+++..++.++.||+.||+|||++||+||||||+|||++.++            
T Consensus       126 ~~~~lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~------------  193 (420)
T 1j1b_A          126 VYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDT------------  193 (420)
T ss_dssp             EEEEEEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTT------------
T ss_pred             eeEEeehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCC------------
Confidence            35789999997788877653  2234799999999999999999999999999999999999997432            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                    ..+||+|||++.....  .....+||+.|+|||++.+. .++.++|||||||++|||++|+.||.+
T Consensus       194 --------------~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~  259 (420)
T 1j1b_A          194 --------------AVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPG  259 (420)
T ss_dssp             --------------TEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             --------------CeEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCC
Confidence                          2468888888865432  23345899999999999775 699999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+..+.+..+.+.++.++...+.......       ....++.....              ..........+.++.+||.
T Consensus       260 ~~~~~~l~~i~~~lg~p~~~~~~~~~~~~-------~~~~~p~~~~~--------------~~~~~~~~~~~~~~~~Li~  318 (420)
T 1j1b_A          260 DSGVDQLVEIIKVLGTPTREQIREMNPNY-------TEFKFPQIKAH--------------PWTKVFRPRTPPEAIALCS  318 (420)
T ss_dssp             SSHHHHHHHHHHHHCSCCHHHHHHHCSCC-------CCCCCCCCCCC--------------CHHHHSCTTSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCCHHHHHhhChhh-------hhhccCccCCC--------------CHHHhcCCCCCHHHHHHHH
Confidence            99999999999988887765443322111       01111111000              0011122345789999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||++||++|||+.|+++||||++.
T Consensus       319 ~~L~~dP~~R~t~~e~l~hp~f~~~  343 (420)
T 1j1b_A          319 RLLEYTPTARLTPLEACAHSFFDEL  343 (420)
T ss_dssp             HHSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred             HhccCChhHCCCHHHHhCCHhhccc
Confidence            9999999999999999999999763

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.1e-49  Score=400.38  Aligned_cols=252  Identities=27%  Similarity=0.440  Sum_probs=211.2

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|++.+.||+|+||.||+|++..+|+.||||++.+..    .....+.+|+.+++.++|++|     +++++++.+.+
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~I-----v~l~~~~~~~~  257 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFV-----VSLAYAYETKD  257 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTB-----CCEEEEEECSS
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCE-----eeEEEEEeeCC
Confidence            467999999999999999999999999999999996532    234567889999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||+ |++|.+++.......+++..++.++.||+.||+|||++|||||||||+|||++.+|              
T Consensus       258 ~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g--------------  323 (576)
T 2acx_A          258 ALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHG--------------  323 (576)
T ss_dssp             EEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTS--------------
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCC--------------
Confidence            999999999 99999999876655699999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                   .+||+|||++.......  ...+||+.|+|||++.+..++.++|||||||++|||++|..||.+...
T Consensus       324 -------------~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~  390 (576)
T 2acx_A          324 -------------HIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKK  390 (576)
T ss_dssp             -------------CEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSS
T ss_pred             -------------CeEEEecccceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCccccc
Confidence                         46777777776543322  335899999999999998999999999999999999999999987542


Q ss_pred             H----HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          324 L----EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       324 ~----~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      .    .....+.....                                                  .....++.++.+||
T Consensus       391 ~~~~~~i~~~i~~~~~--------------------------------------------------~~p~~~s~~~~dLI  420 (576)
T 2acx_A          391 KIKREEVERLVKEVPE--------------------------------------------------EYSERFSPQARSLC  420 (576)
T ss_dssp             CCCHHHHHHHHHHCCC--------------------------------------------------CCCTTSCHHHHHHH
T ss_pred             chhHHHHHHHhhcccc--------------------------------------------------cCCccCCHHHHHHH
Confidence            1    11111111100                                                  11234577999999


Q ss_pred             HHhcccCCCCCC-----CHHHHhcCCCCCC
Q 013941          400 QGLLRYDPAERL-----KAREALRHPFFTR  424 (433)
Q Consensus       400 ~~~L~~dP~~R~-----ta~ell~hp~f~~  424 (433)
                      .+||+.||++||     +++||++||||++
T Consensus       421 ~~lL~~dP~~R~g~~~~sa~eil~HpfF~~  450 (576)
T 2acx_A          421 SQLLCKDPAERLGCRGGSAREVKEHPLFKK  450 (576)
T ss_dssp             HHHTCSSGGGSTTCSSSHHHHHHTSGGGTT
T ss_pred             HHhccCCHHHcCCCCCCCHHHHHhChhhcc
Confidence            999999999999     8999999999997

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=2e-49  Score=378.13  Aligned_cols=259  Identities=28%  Similarity=0.411  Sum_probs=217.3

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      .....++|.+.+.||+|+||.||+|++..+++.||+|++....    ...+.+.+|+.+++.+.|+||     +++++++
T Consensus        36 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~  110 (335)
T 2owb_A           36 DPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHV-----VGFHGFF  110 (335)
T ss_dssp             ETTTTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEE
T ss_pred             CcccCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCC-----CeEEEEE
Confidence            3445678999999999999999999999999999999986532    345677889999999988777     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      .+.+.+|+||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++          
T Consensus       111 ~~~~~~~lv~e~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~----------  178 (335)
T 2owb_A          111 EDNDFVFVVLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDL----------  178 (335)
T ss_dssp             ECSSEEEEEECCCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC----------
T ss_pred             ecCCeEEEEEecCCCCCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCC----------
Confidence            9999999999999 899999988764  799999999999999999999999999999999999997655          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                       .+||+|||++.....   ......||..|+|||++.+..++.++|||||||++|+|++|..||
T Consensus       179 -----------------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf  241 (335)
T 2owb_A          179 -----------------EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF  241 (335)
T ss_dssp             -----------------CEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             -----------------CEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCC
Confidence                             467777777654332   223357899999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ......+....+......+                                                  ...++..+.+|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~l  271 (335)
T 2owb_A          242 ETSCLKETYLRIKKNEYSI--------------------------------------------------PKHINPVAASL  271 (335)
T ss_dssp             CCSSHHHHHHHHHHTCCCC--------------------------------------------------CTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHhcCCCCC--------------------------------------------------CccCCHHHHHH
Confidence            8877655544443321111                                                  12346689999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      |.+||+.||++|||++|+++||||++.....
T Consensus       272 i~~~l~~dp~~Rps~~ell~~~~~~~~~~~~  302 (335)
T 2owb_A          272 IQKMLQTDPTARPTINELLNDEFFTSGYIPA  302 (335)
T ss_dssp             HHHHTCSSGGGSCCGGGGGGSHHHHTSCCCS
T ss_pred             HHHHccCChhHCcCHHHHhcCccccCCCccc
Confidence            9999999999999999999999999865443

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.3e-50  Score=382.16  Aligned_cols=281  Identities=28%  Similarity=0.494  Sum_probs=216.0

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh------hHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK------YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      .++|++.+.||+|+||.||+|++..+|+.||||++.....      ....+.+|+.+++.++|+||     +++++++.+
T Consensus         9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~   83 (346)
T 1ua2_A            9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNI-----IGLLDAFGH   83 (346)
T ss_dssp             ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTB-----CCEEEEECC
T ss_pred             hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCC-----CeEEEEEee
Confidence            4689999999999999999999999999999999864321      12457789999999988877     999999999


Q ss_pred             CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          165 RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       165 ~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .+..++||||+.++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++             
T Consensus        84 ~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~-------------  149 (346)
T 1ua2_A           84 KSNISLVFDFMETDLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENG-------------  149 (346)
T ss_dssp             TTCCEEEEECCSEEHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC-------------
T ss_pred             CCceEEEEEcCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCC-------------
Confidence            99999999999779999987653 4689999999999999999999999999999999999997665             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                    .+||+|||++.....   ......||+.|+|||++.+. .++.++|||||||++|+|++|.+||.+
T Consensus       150 --------------~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~  215 (346)
T 1ua2_A          150 --------------VLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPG  215 (346)
T ss_dssp             --------------CEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             --------------CEEEEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence                          456666666554322   12335789999999999765 589999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+..+.+..+....+.++...+........ +....   ..+.                  ..........+.++.+||.
T Consensus       216 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~------------------~~~~~~~~~~~~~~~~li~  273 (346)
T 1ua2_A          216 DSDLDQLTRIFETLGTPTEEQWPDMCSLPD-YVTFK---SFPG------------------IPLHHIFSAAGDDLLDLIQ  273 (346)
T ss_dssp             SSHHHHHHHHHHHHCCCCTTTSSSTTSSTT-CCCCC---CCCC------------------CCHHHHCTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCCChhhhhhhccCcc-ccccc---ccCC------------------CChHHhhccCCHHHHHHHH
Confidence            998888888887776655432211110000 00000   0000                  0011123456789999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      +||+.||++|||++|+|+||||++..
T Consensus       274 ~~L~~dP~~Rpt~~ell~h~~f~~~~  299 (346)
T 1ua2_A          274 GLFLFNPCARITATQALKMKYFSNRP  299 (346)
T ss_dssp             HHHCSSTTTSCCHHHHHTSGGGTSSS
T ss_pred             HHhccChhhCCCHHHHhcChhhhcCC
Confidence            99999999999999999999998754

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=3.6e-49  Score=374.05  Aligned_cols=251  Identities=25%  Similarity=0.429  Sum_probs=210.4

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      .|...+.||+|+||.||+|++..+|+.||||++.... ...+.+.+|+.++++++|+|+     +++++++...+..++|
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~~~~lv  120 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNV-----VEMYKSYLVGEELWVL  120 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTB-----CCEEEEEEETTEEEEE
T ss_pred             hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCc-----ceEEEEEEECCEEEEE
Confidence            4888899999999999999999999999999987533 345668899999999988877     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++...   .+++..+..++.||+.||+|||++||+||||||+|||++.++                   
T Consensus       121 ~e~~~~~~L~~~l~~~---~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~-------------------  178 (321)
T 2c30_A          121 MEFLQGGALTDIVSQV---RLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDG-------------------  178 (321)
T ss_dssp             ECCCCSCBHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC-------------------
T ss_pred             EecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCC-------------------
Confidence            9999 99999998754   599999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL  327 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~  327 (433)
                              .+||+|||++......   .....||+.|+|||++.+..++.++|||||||++|+|++|..||.+....+..
T Consensus       179 --------~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~  250 (321)
T 2c30_A          179 --------RVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAM  250 (321)
T ss_dssp             --------CEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH
T ss_pred             --------cEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence                    4677777776543322   23358999999999999989999999999999999999999999887766555


Q ss_pred             HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCC
Q 013941          328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDP  407 (433)
Q Consensus       328 ~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP  407 (433)
                      ..+.....+.                                               ......++..+.+||.+||+.||
T Consensus       251 ~~~~~~~~~~-----------------------------------------------~~~~~~~~~~l~~li~~~l~~dp  283 (321)
T 2c30_A          251 KRLRDSPPPK-----------------------------------------------LKNSHKVSPVLRDFLERMLVRDP  283 (321)
T ss_dssp             HHHHHSSCCC-----------------------------------------------CTTGGGSCHHHHHHHHHHSCSST
T ss_pred             HHHhcCCCCC-----------------------------------------------cCccccCCHHHHHHHHHHccCCh
Confidence            4443321100                                               00112346789999999999999


Q ss_pred             CCCCCHHHHhcCCCCCCC
Q 013941          408 AERLKAREALRHPFFTRD  425 (433)
Q Consensus       408 ~~R~ta~ell~hp~f~~~  425 (433)
                      ++|||++|+++||||.+.
T Consensus       284 ~~Rps~~ell~hp~~~~~  301 (321)
T 2c30_A          284 QERATAQELLDHPFLLQT  301 (321)
T ss_dssp             TTSCCHHHHHTSGGGGGC
T ss_pred             hhCcCHHHHhcChhhccC
Confidence            999999999999999865

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=3.3e-49  Score=380.34  Aligned_cols=287  Identities=30%  Similarity=0.466  Sum_probs=215.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC----
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN----  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~----  166 (433)
                      .++|++.+.||+|+||.||+|++..+++.||||++...........+|+..+..+.|+||     +++++++...+    
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~ni-----v~~~~~~~~~~~~~~   96 (360)
T 3e3p_A           22 MDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNI-----VQLQSYFYTLGERDR   96 (360)
T ss_dssp             HTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTB-----CCEEEEEEEECSSCT
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCc-----ccHHHhhhccccccc
Confidence            357999999999999999999999999999999987665555667778888888988877     99999885432    


Q ss_pred             ---eEEEEEccCCCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHH--hCCcEecCCCCCcEEEee-CCcccccCc
Q 013941          167 ---HICIVFEKLGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMH--ELRLIHTDLKPENILLVS-AEYVKVPDY  238 (433)
Q Consensus       167 ---~~~lv~e~~~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~LH--~~~ivHrDikp~NIli~~-~~~~~l~d~  238 (433)
                         .+++||||+.++|.+.+..  .....+++..++.++.||+.||.|||  ++||+||||||+|||++. ++       
T Consensus        97 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~-------  169 (360)
T 3e3p_A           97 RDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADG-------  169 (360)
T ss_dssp             TCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTT-------
T ss_pred             cceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCC-------
Confidence               3899999997787766553  23347899999999999999999999  999999999999999975 33       


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCC-CCccchHHHHHHHHHHHHhCC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~el~~g~  315 (433)
                                          .+||+|||++.......  ....||+.|+|||++.+.. ++.++|||||||++|+|++|.
T Consensus       170 --------------------~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~  229 (360)
T 3e3p_A          170 --------------------TLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGE  229 (360)
T ss_dssp             --------------------EEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSS
T ss_pred             --------------------cEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence                                57788888776544322  3357899999999997654 899999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||.+.+....+..+.+..+.++...+.........+       .+.....           ..............+.++
T Consensus       230 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-----------~~~~~~~~~~~~~~~~~~  291 (360)
T 3e3p_A          230 PIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDV-------DLYNSKG-----------IPWSNVFSDHSLKDAKEA  291 (360)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCG-------GGGCCCC-----------CCHHHHTTTCCCTTHHHH
T ss_pred             CCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhc-------ccccccc-----------CCcccccchhhccccHHH
Confidence            9999999999999999999988876655432211110       0000000           001111122233467899


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .+||.+||+.||++|||+.|+|+||||++...
T Consensus       292 ~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~  323 (360)
T 3e3p_A          292 YDLLSALLQYLPEERMKPYEALCHPYFDELHD  323 (360)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGC
T ss_pred             HHHHHHHhccCccccCCHHHHhcCccccccCC
Confidence            99999999999999999999999999997543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1.8e-49  Score=410.32  Aligned_cols=252  Identities=24%  Similarity=0.381  Sum_probs=213.2

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|++++.||+|+||.||+|++..+++.||||++++.    ....+....|..++..+.++    ++++.+++++++.+
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~----~~i~~l~~~~~~~~  415 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKP----PFLTQLHSCFQTMD  415 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCC----TTBCCEEEECBCSS
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCC----CeEEEEEEEEEeCC
Confidence            36799999999999999999999999999999999753    23345677788888776432    44599999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+||||||+ +++|.+++....  .+++..++.++.||+.||+|||++|||||||||+||||+.+|              
T Consensus       416 ~~~lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g--------------  479 (674)
T 3pfq_A          416 RLYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEG--------------  479 (674)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSS--------------
T ss_pred             EEEEEEeCcCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCC--------------
Confidence            999999999 999999998765  799999999999999999999999999999999999997666              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   .+||+|||++....   ......+||+.|+|||++.+..|+.++|||||||++|||++|..||.+.+
T Consensus       480 -------------~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~  546 (674)
T 3pfq_A          480 -------------HIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED  546 (674)
T ss_dssp             -------------CEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             -------------cEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCC
Confidence                         46777777665422   22344689999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+....|......+|                                                  ..++.++.+||.+|
T Consensus       547 ~~~~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~~li~~l  576 (674)
T 3pfq_A          547 EDELFQSIMEHNVAYP--------------------------------------------------KSMSKEAVAICKGL  576 (674)
T ss_dssp             HHHHHHHHHSSCCCCC--------------------------------------------------TTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCC--------------------------------------------------ccCCHHHHHHHHHH
Confidence            7777666654322222                                                  24577999999999


Q ss_pred             cccCCCCCCCH-----HHHhcCCCCCCC
Q 013941          403 LRYDPAERLKA-----REALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~ta-----~ell~hp~f~~~  425 (433)
                      |+.||++|+++     +||++||||+..
T Consensus       577 L~~dP~~R~~~~~~~~~ei~~h~ff~~i  604 (674)
T 3pfq_A          577 MTKHPGKRLGCGPEGERDIKEHAFFRYI  604 (674)
T ss_dssp             SCSSSTTCTTCSTTHHHHHHSSGGGSSC
T ss_pred             ccCCHHHCCCCCCCcHHHHhcCccccCC
Confidence            99999999997     999999999863

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.9e-49  Score=369.43  Aligned_cols=255  Identities=26%  Similarity=0.426  Sum_probs=215.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....    .....+.+|+.+++.++|+++     +++++++.+.+.
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~   88 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNI-----LRMYNYFHDRKR   88 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTB-----CCEEEEEECSSE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCE-----eeEEEEEEcCCE
Confidence            57999999999999999999999999999999986432    234567889999999988777     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .++||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+||+++.++               
T Consensus        89 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~---------------  151 (284)
T 2vgo_A           89 IYLMLEFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKG---------------  151 (284)
T ss_dssp             EEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTC---------------
T ss_pred             EEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCC---------------
Confidence            99999999 889999998765  699999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                  .++|+|||++...... .....||+.|+|||++.+..++.++||||||+++|+|++|..||.......
T Consensus       152 ------------~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~  219 (284)
T 2vgo_A          152 ------------ELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE  219 (284)
T ss_dssp             ------------CEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             ------------CEEEecccccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH
Confidence                        4677777776543322 234578999999999999899999999999999999999999998877665


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+......                                                  ....++.++.+||.+||+.
T Consensus       220 ~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~li~~~l~~  249 (284)
T 2vgo_A          220 THRRIVNVDLK--------------------------------------------------FPPFLSDGSKDLISKLLRY  249 (284)
T ss_dssp             HHHHHHTTCCC--------------------------------------------------CCTTSCHHHHHHHHHHSCS
T ss_pred             HHHHHhccccC--------------------------------------------------CCCcCCHHHHHHHHHHhhc
Confidence            54443321111                                                  1123467899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCccccC
Q 013941          406 DPAERLKAREALRHPFFTRDVRRCG  430 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~~~~  430 (433)
                      ||++|||++|+++||||+...++.-
T Consensus       250 ~p~~Rps~~~ll~h~~~~~~~~~~~  274 (284)
T 2vgo_A          250 HPPQRLPLKGVMEHPWVKANSRRVL  274 (284)
T ss_dssp             SGGGSCCHHHHHTCHHHHHHCCCCC
T ss_pred             CHhhCCCHHHHhhCHHHHhhccccC
Confidence            9999999999999999998655543

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.4e-50  Score=390.65  Aligned_cols=297  Identities=25%  Similarity=0.455  Sum_probs=210.2

Q ss_pred             CccCCCeEEe-ccccccccEEEEEEEec--CCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEeccee--
Q 013941           88 ENLTPRYRIL-SKMGEGTFGQVVECFDN--EKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF--  162 (433)
Q Consensus        88 ~~~~~~y~~~-~~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~--  162 (433)
                      +.+.+.|++. ++||+|+||+||+|++.  .+++.||||++.... ....+.+|+.+++.++|+||     +++++++  
T Consensus        16 ~~~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~-~~~~~~~E~~~l~~l~hpni-----v~~~~~~~~   89 (405)
T 3rgf_A           16 ERVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG-ISMSACREIALLRELKHPNV-----ISLQKVFLS   89 (405)
T ss_dssp             CCHHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS-CCHHHHHHHHHHHHCCCTTB-----CCCCEEEEE
T ss_pred             hhhhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC-CCHHHHHHHHHHHhcCCCCe-----eeEeeEEec
Confidence            3455678874 58999999999999965  578899999997533 33567889999999998877     9999998  


Q ss_pred             ccCCeEEEEEccCCCCHHHHHHhcC-------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccc
Q 013941          163 DYRNHICIVFEKLGPSLYDFLRKNS-------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV  235 (433)
Q Consensus       163 ~~~~~~~lv~e~~~~~L~~~l~~~~-------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l  235 (433)
                      .....+|+||||++++|.+++....       ...+++..++.++.||+.||+|||++||+||||||+|||+...+    
T Consensus        90 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~----  165 (405)
T 3rgf_A           90 HADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEG----  165 (405)
T ss_dssp             TTTTEEEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSS----
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCC----
Confidence            4578999999999889998886321       12499999999999999999999999999999999999995432    


Q ss_pred             cCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCC-CCCccchHHHHHHHH
Q 013941          236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCIL  308 (433)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il  308 (433)
                                         +....+||+|||++......      ....+||+.|+|||++.+. .++.++|||||||++
T Consensus       166 -------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il  226 (405)
T 3rgf_A          166 -------------------PERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIF  226 (405)
T ss_dssp             -------------------TTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred             -------------------CCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHH
Confidence                               24457899999988764432      2335899999999999875 589999999999999


Q ss_pred             HHHHhCCCCCCCCCh---------HHHHHHHHHHhcCCChhhHHhhhhhhhhh--hcCCccccCCCCCCchhhHHHHHHh
Q 013941          309 VELCSGEALFQTHEN---------LEHLAMMERVLGPLPHHMVIRADRRAEKY--FRRGARLDWPDGATSRDSMRAVWKL  377 (433)
Q Consensus       309 ~el~~g~~pf~~~~~---------~~~~~~i~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  377 (433)
                      |+|++|..||.+...         .+.+..+...++.++...+..........  ........+.              .
T Consensus       227 ~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~  292 (405)
T 3rgf_A          227 AELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYT--------------N  292 (405)
T ss_dssp             HHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGT--------------T
T ss_pred             HHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCC--------------c
Confidence            999999999976554         46777788877776654322211100000  0000000000              0


Q ss_pred             cCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       378 ~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ..............+..+.+||.+||++||++|||++|+|+||||++...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~  342 (405)
T 3rgf_A          293 CSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPL  342 (405)
T ss_dssp             CCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSC
T ss_pred             chhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhccCCC
Confidence            00001111122234678999999999999999999999999999998643

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=2.4e-49  Score=372.48  Aligned_cols=261  Identities=25%  Similarity=0.424  Sum_probs=216.9

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ..+.++|++.+.||+|+||.||+|++..+++.||+|+++.... ..+.+.+|+.+++.+.|+++     +++++++.+.+
T Consensus         5 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~   79 (304)
T 2jam_A            5 TNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENI-----VTLEDIYESTT   79 (304)
T ss_dssp             -CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTB-----CCEEEEEECSS
T ss_pred             cchhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCe-----eehhhhcccCC
Confidence            3455789999999999999999999999999999999975432 34567889999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+||++...               
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~---------------  142 (304)
T 2jam_A           80 HYYLVMQLVSGGELFDRILERG--VYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTP---------------  142 (304)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSS---------------
T ss_pred             EEEEEEEcCCCccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecC---------------
Confidence            999999999 899999998765  69999999999999999999999999999999999998431               


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                               +.+..++|+|||++...... .....||+.|+|||++.+..++.++|||||||++|+|++|..||......
T Consensus       143 ---------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  213 (304)
T 2jam_A          143 ---------EENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES  213 (304)
T ss_dssp             ---------STTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             ---------CCCCCEEEccCCcceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH
Confidence                     13446888899888654432 23357999999999999989999999999999999999999999887776


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+......++.                                              .....++.++.+||.+||+
T Consensus       214 ~~~~~i~~~~~~~~~----------------------------------------------~~~~~~~~~~~~li~~~l~  247 (304)
T 2jam_A          214 KLFEKIKEGYYEFES----------------------------------------------PFWDDISESAKDFICHLLE  247 (304)
T ss_dssp             HHHHHHHHCCCCCCT----------------------------------------------TTTTTSCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCCc----------------------------------------------cccccCCHHHHHHHHHHcC
Confidence            665555443221111                                              1123457789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .||++|||++|+++||||++.
T Consensus       248 ~dp~~Rps~~~~l~h~~~~~~  268 (304)
T 2jam_A          248 KDPNERYTCEKALSHPWIDGN  268 (304)
T ss_dssp             SSTTTSCCHHHHHTSHHHHSS
T ss_pred             CChhHCcCHHHHhcCccccCC
Confidence            999999999999999999865

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=3e-49  Score=384.90  Aligned_cols=282  Identities=30%  Similarity=0.524  Sum_probs=218.5

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--  164 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--  164 (433)
                      ++....+|++.+.||+|+||+||+|++..+++ ||+|++......   ..+|+.+++.++|+||     +++++++..  
T Consensus        35 ~~~~~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~~---~~~E~~il~~l~h~ni-----v~l~~~~~~~~  105 (394)
T 4e7w_A           35 GEQREIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKRF---KNRELQIMRIVKHPNV-----VDLKAFFYSNG  105 (394)
T ss_dssp             CCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTTS---CCHHHHHHHTCCCTTB-----CCEEEEEEEES
T ss_pred             CCcccceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcch---HHHHHHHHHhCCCCCc-----ceEEEEEEecC
Confidence            34445689999999999999999999887776 888877543322   2369999999988877     999998844  


Q ss_pred             ----CCeEEEEEccCCCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEe-eCCcccccC
Q 013941          165 ----RNHICIVFEKLGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV-SAEYVKVPD  237 (433)
Q Consensus       165 ----~~~~~lv~e~~~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~-~~~~~~l~d  237 (433)
                          ...+++||||+.+++.+.+..  .....+++..++.++.||+.||+|||++||+||||||+|||++ .++      
T Consensus       106 ~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~------  179 (394)
T 4e7w_A          106 DKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSG------  179 (394)
T ss_dssp             SSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTT------
T ss_pred             CCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCC------
Confidence                334899999997777665542  1224799999999999999999999999999999999999997 344      


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhC
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g  314 (433)
                                           .+||+|||++.....  ......||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus       180 ---------------------~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g  238 (394)
T 4e7w_A          180 ---------------------VLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQG  238 (394)
T ss_dssp             ---------------------EEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHS
T ss_pred             ---------------------cEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                 577888887765432  23345889999999999775 589999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      +.||.+.+..+.+..+.+.++.++...+........   .    ..++....              ...........+++
T Consensus       239 ~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~---~----~~~~~~~~--------------~~~~~~~~~~~~~~  297 (394)
T 4e7w_A          239 QPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYM---E----HKFPQIRP--------------HPFSKVFRPRTPPD  297 (394)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGS---S----SCCCCCCC--------------CCHHHHSCTTCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhh---h----hccccccC--------------CcHHHhccccCCHH
Confidence            999999999999999999999887665443322111   0    01111000              00111122346789


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          395 LIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +.+||.+||++||++|||+.|+++||||++-
T Consensus       298 ~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  328 (394)
T 4e7w_A          298 AIDLISRLLEYTPSARLTAIEALCHPFFDEL  328 (394)
T ss_dssp             HHHHHHHHCCSSGGGSCCHHHHHTSGGGSTT
T ss_pred             HHHHHHHHhCCChhhCCCHHHHhcChhhhhh
Confidence            9999999999999999999999999999864

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=3.2e-49  Score=376.14  Aligned_cols=282  Identities=28%  Similarity=0.474  Sum_probs=221.2

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|++++.||+|+||.||+|++..+++.||||++....   ...+.+.+|+.++++++|+||     +++++++.+.+.
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~   98 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENL-----VNLLEVCKKKKR   98 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEEETTE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCE-----eeEEEEeecCCE
Confidence            467999999999999999999999999999999986432   334567789999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++               
T Consensus        99 ~~lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~---------------  161 (331)
T 4aaa_A           99 WYLVFEFVDHTILDDLELFPN--GLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSG---------------  161 (331)
T ss_dssp             EEEEEECCSEEHHHHHHHSTT--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS---------------
T ss_pred             EEEEEecCCcchHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCC---------------
Confidence            99999999 667777665443  699999999999999999999999999999999999996554               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                  .+||+|||++......   .....||..|+|||++.+. .++.++|||||||++|+|++|..||.+..
T Consensus       162 ------------~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  229 (331)
T 4aaa_A          162 ------------VVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDS  229 (331)
T ss_dssp             ------------CEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ------------cEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence                        5777777777543322   2335789999999999876 68999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+.+..+....+..++...........  +.   ...++.....              .........++..+.+||.+|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~--------------~~~~~~~~~~~~~l~~li~~~  290 (331)
T 4aaa_A          230 DIDQLYHIMMCLGNLIPRHQELFNKNPV--FA---GVRLPEIKER--------------EPLERRYPKLSEVVIDLAKKC  290 (331)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHCGG--GT---TCCCCCCSSC--------------CCHHHHSTTSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCChhhhhHhhhccc--cc---cccCcccccc--------------chhhhcccchhHHHHHHHHHH
Confidence            9988888888888776544322211100  00   0011111000              011122345678999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCC
Q 013941          403 LRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |+.||++|||+.|+|+||||+..
T Consensus       291 L~~dP~~Rpt~~ell~hp~f~~~  313 (331)
T 4aaa_A          291 LHIDPDKRPFCAELLHHDFFQMD  313 (331)
T ss_dssp             TCSSGGGSCCGGGGGGSHHHHGG
T ss_pred             hccCcccCCCHHHHhcCchhccC
Confidence            99999999999999999999865

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=3.9e-49  Score=395.52  Aligned_cols=252  Identities=23%  Similarity=0.361  Sum_probs=209.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .++|++.+.||+|+||.||+|++..+|+.||||++.+..    .....+.+|+.++++++|++|     +++++++.+.+
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~I-----v~l~~~~~~~~  258 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFI-----VSLAYAFETKT  258 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTB-----CCEEEEEECSS
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCE-----eeEEEEEeeCC
Confidence            367999999999999999999999999999999997532    234567889999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          167 HICIVFEKL-GPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      .+|+||||+ |++|.+++....  ...+++..++.++.||+.||+|||++||+||||||+|||++.+|            
T Consensus       259 ~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g------------  326 (543)
T 3c4z_A          259 DLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDG------------  326 (543)
T ss_dssp             EEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTS------------
T ss_pred             EEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCC------------
Confidence            999999999 999999997643  34699999999999999999999999999999999999997665            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                     .+||+|||++......   ....+||+.|+|||++.+..++.++|||||||++|||++|..||.+
T Consensus       327 ---------------~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~  391 (543)
T 3c4z_A          327 ---------------NVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRA  391 (543)
T ss_dssp             ---------------CEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ---------------CEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCC
Confidence                           4677777776544322   2235899999999999999999999999999999999999999987


Q ss_pred             CCh----HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          321 HEN----LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       321 ~~~----~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ...    ......+.....                                                  ..+..++.++.
T Consensus       392 ~~~~~~~~~~~~~i~~~~~--------------------------------------------------~~p~~~s~~~~  421 (543)
T 3c4z_A          392 RGEKVENKELKQRVLEQAV--------------------------------------------------TYPDKFSPASK  421 (543)
T ss_dssp             TTCCCCHHHHHHHHHHCCC--------------------------------------------------CCCTTSCHHHH
T ss_pred             CccchhHHHHHHHHhhccc--------------------------------------------------CCCcccCHHHH
Confidence            532    222222211111                                                  11234577999


Q ss_pred             HHHHHhcccCCCCCCC-----HHHHhcCCCCCC
Q 013941          397 DLLQGLLRYDPAERLK-----AREALRHPFFTR  424 (433)
Q Consensus       397 ~li~~~L~~dP~~R~t-----a~ell~hp~f~~  424 (433)
                      +||.+||+.||++||+     ++++++||||++
T Consensus       422 ~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~  454 (543)
T 3c4z_A          422 DFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRD  454 (543)
T ss_dssp             HHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTT
T ss_pred             HHHHHhccCCHhHCCCCcccCHHHHHcCccccC
Confidence            9999999999999995     589999999997

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=2e-48  Score=373.84  Aligned_cols=285  Identities=30%  Similarity=0.467  Sum_probs=219.9

Q ss_pred             cCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           86 IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        86 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      ++..+.++|++.+.||+|+||.||+|++..+|+.||||++....  .....+.+|+.++++++|+|+     +++++++.
T Consensus         5 ~~~~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~   79 (353)
T 2b9h_A            5 IVYNISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENI-----ITIFNIQR   79 (353)
T ss_dssp             CCCCSCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTB-----CCEEEECC
T ss_pred             cccccccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCc-----CCeeeeec
Confidence            34567789999999999999999999999999999999996432  344567789999999988877     88888765


Q ss_pred             c-----CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          164 Y-----RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       164 ~-----~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                      .     ....|+||||++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++.      
T Consensus        80 ~~~~~~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~------  150 (353)
T 2b9h_A           80 PDSFENFNEVYIIQELMQTDLHRVISTQ---MLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCD------  150 (353)
T ss_dssp             CSCSTTCCCEEEEECCCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCC------
T ss_pred             ccccCccceEEEEEeccCccHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCc------
Confidence            4     3789999999988999999874   5999999999999999999999999999999999999977665      


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccC-------------CCcccccCCcccchhhhhC-CCCCccchHHHH
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-------------DHSYVVSTRHYRAPEVILG-LGWNYPCDLWSV  304 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-------------~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSl  304 (433)
                                           +||+|||++.....             ......||+.|+|||++.+ ..++.++|||||
T Consensus       151 ---------------------~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~sl  209 (353)
T 2b9h_A          151 ---------------------LKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSC  209 (353)
T ss_dssp             ---------------------EEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHH
T ss_pred             ---------------------EEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHH
Confidence                                 45555555443221             1122478999999998875 678999999999


Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhc-Cch-h
Q 013941          305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL-RLP-N  382 (433)
Q Consensus       305 G~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~  382 (433)
                      ||++|+|++|..||.+.+....+..+....+.++.......                   ... .......... ..+ .
T Consensus       210 G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~  269 (353)
T 2b9h_A          210 GCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRC-------------------IES-PRAREYIKSLPMYPAA  269 (353)
T ss_dssp             HHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTT-------------------CCC-HHHHHHHHTSCCCCCC
T ss_pred             HHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccc-------------------ccc-chhhHHhhcccCCCCc
Confidence            99999999999999999988888888877766542110000                   000 0001111100 000 0


Q ss_pred             hhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       383 ~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ........++.++.+||.+||+.||++|||++|+++||||+..
T Consensus       270 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~  312 (353)
T 2b9h_A          270 PLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQTY  312 (353)
T ss_dssp             CHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTT
T ss_pred             chhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCcccccc
Confidence            1112234668899999999999999999999999999999875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=6e-49  Score=372.02  Aligned_cols=292  Identities=26%  Similarity=0.428  Sum_probs=216.9

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee---
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF---  162 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~---  162 (433)
                      |..+.++|++++.||+|+||.||+|.+..+++.||+|++.... ...+.+.+|+.++++++|+|+     +++++++   
T Consensus         6 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~   80 (320)
T 2i6l_A            6 GFDLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNI-----VKVFEILGPS   80 (320)
T ss_dssp             CEEETTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEECTT
T ss_pred             cCccCCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCe-----eEEEEecccc
Confidence            4566789999999999999999999999999999999987543 445677899999999988877     8888776   


Q ss_pred             -----------ccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          163 -----------DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       163 -----------~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                                 ...+..|+||||++++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.+ 
T Consensus        81 ~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~-  156 (320)
T 2i6l_A           81 GSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQG---PLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTE-  156 (320)
T ss_dssp             SCBCCC----CCSCSEEEEEEECCSEEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETT-
T ss_pred             ccccccccccccccCceeEEeeccCCCHHHHhhcC---CccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCC-
Confidence                       345789999999988999998653   69999999999999999999999999999999999999632 


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC------CCcccccCCcccchhhhhC-CCCCccchHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ------DHSYVVSTRHYRAPEVILG-LGWNYPCDLWSV  304 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~------~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSl  304 (433)
                                               +..+||+|||++.....      ......+|..|+|||++.+ ..++.++|||||
T Consensus       157 -------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~sl  211 (320)
T 2i6l_A          157 -------------------------DLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAA  211 (320)
T ss_dssp             -------------------------TTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHH
T ss_pred             -------------------------CCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhH
Confidence                                     23567777777765432      1223467999999999876 678999999999


Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhh
Q 013941          305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI  384 (433)
Q Consensus       305 G~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (433)
                      ||++|+|++|+.||.+.+..+....+....+................+...                  ..  .......
T Consensus       212 G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~--~~~~~~~  271 (320)
T 2i6l_A          212 GCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRN------------------DM--TEPHKPL  271 (320)
T ss_dssp             HHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHH------------------HT--TSCCCCH
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccc------------------cc--cCCCCCh
Confidence            999999999999999988888777777665554433222111110000000                  00  0000011


Q ss_pred             hhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCccccCCC
Q 013941          385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFP  432 (433)
Q Consensus       385 ~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~~~~~  432 (433)
                      ......++.++.+||.+||+.||++|||++|+++||||+...-+...|
T Consensus       272 ~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~p~~~~  319 (320)
T 2i6l_A          272 TQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPMDEP  319 (320)
T ss_dssp             HHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC-----
T ss_pred             hHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcccccccCccCCC
Confidence            122345688999999999999999999999999999999765444433

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.7e-48  Score=375.80  Aligned_cols=257  Identities=30%  Similarity=0.507  Sum_probs=212.6

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---------hhHHHHHHHHHHHHHH-HhCCCCCcceeE
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---------KYREAAMIEIDVLQRL-ARHDIGGTRCVQ  157 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l-~~~~i~~~~~v~  157 (433)
                      ..+.++|++.+.||+|+||.||+|++..+|+.||||+++...         ...+.+.+|+.+++++ .|+++     ++
T Consensus        90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~i-----v~  164 (365)
T 2y7j_A           90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHI-----IT  164 (365)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTB-----CC
T ss_pred             hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCE-----eE
Confidence            344568999999999999999999999999999999986432         2245677899999999 67777     99


Q ss_pred             ecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          158 IRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       158 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                      +++++...+..|+||||+ +++|.+++....  .+++..++.++.||+.||.|||+.||+||||||+|||++.+|     
T Consensus       165 ~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~-----  237 (365)
T 2y7j_A          165 LIDSYESSSFMFLVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNM-----  237 (365)
T ss_dssp             EEEEEEBSSEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC-----
T ss_pred             EEEEEeeCCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCC-----
Confidence            999999999999999999 889999998764  699999999999999999999999999999999999997655     


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhC------CCCCccchHHHHHHHH
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILG------LGWNYPCDLWSVGCIL  308 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlG~il  308 (433)
                                            .++|+|||++......  .....||+.|+|||++.+      ..++.++|||||||++
T Consensus       238 ----------------------~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il  295 (365)
T 2y7j_A          238 ----------------------QIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVIL  295 (365)
T ss_dssp             ----------------------CEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHH
T ss_pred             ----------------------CEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHH
Confidence                                  5677777776544322  234589999999999863      3588999999999999


Q ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          309 VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       309 ~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      |+|++|..||.+.........+......++.                                              ..+
T Consensus       296 ~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~----------------------------------------------~~~  329 (365)
T 2y7j_A          296 FTLLAGSPPFWHRRQILMLRMIMEGQYQFSS----------------------------------------------PEW  329 (365)
T ss_dssp             HHHHHSSCSSCCSSHHHHHHHHHHTCCCCCH----------------------------------------------HHH
T ss_pred             HHHHHCCCCCCCCCHHHHHHHHHhCCCCCCC----------------------------------------------ccc
Confidence            9999999999887766655555432222111                                              112


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      ...+..+.+||.+||+.||++|||++|+++||||++
T Consensus       330 ~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~f~r  365 (365)
T 2y7j_A          330 DDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFER  365 (365)
T ss_dssp             SSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCC
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccCC
Confidence            345678999999999999999999999999999974

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=3e-49  Score=367.81  Aligned_cols=260  Identities=26%  Similarity=0.453  Sum_probs=216.8

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      .++|++.+.||+|+||.||+|++..+++.||+|++....       ...+.+.+|+.+++++.|+++     +++++++.
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~   78 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNI-----ITLHDIFE   78 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTB-----CCEEEEEE
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCe-----eehhheec
Confidence            457999999999999999999999999999999986432       135678899999999988877     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      +.+..++||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+||+++.++           
T Consensus        79 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~-----------  145 (283)
T 3bhy_A           79 NKTDVVLILELVSGGELFDFLAEKE--SLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKN-----------  145 (283)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSS-----------
T ss_pred             CCCeEEEEEeecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCC-----------
Confidence            999999999999 899999998754  699999999999999999999999999999999999997654           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                  .....++|+|||.+......  .....||+.|+|||++.+..++.++||||||+++|+|++|..||.+
T Consensus       146 ------------~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  213 (283)
T 3bhy_A          146 ------------VPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG  213 (283)
T ss_dssp             ------------SSSCCEEECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             ------------CCCCceEEEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCC
Confidence                        12346899999988754432  2335789999999999998999999999999999999999999998


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ....+....+.......+.                                              ......+..+.+||.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~li~  247 (283)
T 3bhy_A          214 ETKQETLTNISAVNYDFDE----------------------------------------------EYFSNTSELAKDFIR  247 (283)
T ss_dssp             SSHHHHHHHHHTTCCCCCH----------------------------------------------HHHTTCCHHHHHHHH
T ss_pred             cchHHHHHHhHhcccCCcc----------------------------------------------hhcccCCHHHHHHHH
Confidence            7776655554432222211                                              112345678999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      +||+.||++|||+.|+++||||+...
T Consensus       248 ~~l~~dp~~Rps~~~~l~h~~~~~~~  273 (283)
T 3bhy_A          248 RLLVKDPKRRMTIAQSLEHSWIKAIR  273 (283)
T ss_dssp             TTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred             HHccCCHhHCcCHHHHHhCHHHHHHH
Confidence            99999999999999999999998743

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.2e-48  Score=376.78  Aligned_cols=287  Identities=25%  Similarity=0.431  Sum_probs=219.1

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch------------hhHHHHHHHHHHHHHHHhCCCCCcc
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN------------KYREAAMIEIDVLQRLARHDIGGTR  154 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------------~~~~~~~~E~~~l~~l~~~~i~~~~  154 (433)
                      ...+.++|++.+.||+|+||.||+|.+.. ++.||||++....            ...+.+.+|+.++++++|+||    
T Consensus        17 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i----   91 (362)
T 3pg1_A           17 LHAMQSPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI----   91 (362)
T ss_dssp             HHHTTCSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB----
T ss_pred             HHHhccceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc----
Confidence            34567899999999999999999999755 8899999985421            123678899999999998877    


Q ss_pred             eeEecceec-----cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          155 CVQIRNWFD-----YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       155 ~v~~~~~~~-----~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                       +++++++.     ....+|+||||++++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.
T Consensus        92 -v~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~  169 (362)
T 3pg1_A           92 -LGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQR-IVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLAD  169 (362)
T ss_dssp             -CCCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECT
T ss_pred             -cceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcC
Confidence             99998883     345799999999889999987543 46999999999999999999999999999999999999965


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhC-CCCCccchHHHHHH
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGC  306 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~  306 (433)
                      ++                           .+||+|||++......  .....||+.|+|||++.+ ..++.++|||||||
T Consensus       170 ~~---------------------------~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~  222 (362)
T 3pg1_A          170 NN---------------------------DITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGC  222 (362)
T ss_dssp             TC---------------------------CEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHH
T ss_pred             CC---------------------------CEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHH
Confidence            54                           5778888877643322  233578999999999987 67899999999999


Q ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhh-hhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          307 ILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADR-RAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       307 il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      ++|+|++|..||.+....+.+..+....+.++......... ....+.... ....+.                  ....
T Consensus       223 il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------------~~~~  283 (362)
T 3pg1_A          223 VMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNS-LSNVPA------------------RAWT  283 (362)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTC-CCCCCC------------------CCHH
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhh-cccCCh------------------hhHH
Confidence            99999999999999999999999988888776544332111 111111111 000000                  0111


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ......++.+.+||.+||+.||++|||++|+++||||++..
T Consensus       284 ~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  324 (362)
T 3pg1_A          284 AVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLF  324 (362)
T ss_dssp             HHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTC
T ss_pred             hhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCchhhhcc
Confidence            22345678899999999999999999999999999999753

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=3.4e-49  Score=378.05  Aligned_cols=256  Identities=25%  Similarity=0.366  Sum_probs=211.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ...++|++++.||+|+||.||+|++..+++.||||++...    ....+.+.+|+.++++++|+|+     +++++++..
T Consensus        51 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~~~~  125 (348)
T 1u5q_A           51 DPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNT-----IQYRGCYLR  125 (348)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEEE
T ss_pred             chhhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEEE
Confidence            3345799999999999999999999999999999998643    2334567899999999988877     999999999


Q ss_pred             CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          165 RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       165 ~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .+..++||||+.|+|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++             
T Consensus       126 ~~~~~lv~e~~~g~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~-------------  191 (348)
T 1u5q_A          126 EHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPG-------------  191 (348)
T ss_dssp             TTEEEEEEECCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTT-------------
T ss_pred             CCeEEEEEecCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCC-------------
Confidence            99999999999889998886543 4799999999999999999999999999999999999997655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhh---CCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                    .+||+|||++...... ....||+.|+|||++.   +..++.++|||||||++|||++|..||.+.
T Consensus       192 --------------~~kL~DfG~a~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~  256 (348)
T 1u5q_A          192 --------------LVKLGDFGSASIMAPA-NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  256 (348)
T ss_dssp             --------------EEEECCCTTCBSSSSB-CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             --------------CEEEeeccCceecCCC-CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                          4677777777654332 3358999999999986   457899999999999999999999999887


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +....+..+.....+.                                                .....++..+.+||.+
T Consensus       257 ~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~li~~  288 (348)
T 1u5q_A          257 NAMSALYHIAQNESPA------------------------------------------------LQSGHWSEYFRNFVDS  288 (348)
T ss_dssp             CHHHHHHHHHHSCCCC------------------------------------------------CCCTTSCHHHHHHHHH
T ss_pred             ChHHHHHHHHhcCCCC------------------------------------------------CCCCCCCHHHHHHHHH
Confidence            7665554433211000                                                0012346789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||+.||++|||++++++||||.+..
T Consensus       289 ~l~~dP~~Rps~~~ll~h~~~~~~~  313 (348)
T 1u5q_A          289 CLQKIPQDRPTSEVLLKHRFVLRER  313 (348)
T ss_dssp             HTCSSGGGSCCHHHHTTCHHHHSCC
T ss_pred             HcccChhhCcCHHHHhhChhhhccC
Confidence            9999999999999999999998753

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=5.4e-49  Score=368.21  Aligned_cols=259  Identities=28%  Similarity=0.407  Sum_probs=216.0

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      .....++|++.+.||+|+||.||+|++..+++.||+|++...    ....+.+.+|+.+++.+.|+||     +++++++
T Consensus        10 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~   84 (294)
T 2rku_A           10 DPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHV-----VGFHGFF   84 (294)
T ss_dssp             ETTTTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEE
T ss_pred             CCCcccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCE-----eeeeeee
Confidence            344557899999999999999999999999999999998653    2345667889999999988777     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      .+.+..++||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++          
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~----------  152 (294)
T 2rku_A           85 EDNDFVFVVLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDL----------  152 (294)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC----------
T ss_pred             ccCCEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCC----------
Confidence            9999999999999 899999988764  799999999999999999999999999999999999997655          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                       .+||+|||++.....   ......||+.|+|||++.+..++.++||||||+++|+|++|..||
T Consensus       153 -----------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~  215 (294)
T 2rku_A          153 -----------------EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF  215 (294)
T ss_dssp             -----------------CEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             -----------------CEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                             467777777654332   223357899999999999988999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ......+....+......                                                  ....++..+.+|
T Consensus       216 ~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~l  245 (294)
T 2rku_A          216 ETSCLKETYLRIKKNEYS--------------------------------------------------IPKHINPVAASL  245 (294)
T ss_dssp             CCSSHHHHHHHHHTTCCC--------------------------------------------------CCTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHhhccCC--------------------------------------------------CccccCHHHHHH
Confidence            887765544433221111                                                  112346789999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCCcccc
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      |.+||+.||++|||++|+++||||++.....
T Consensus       246 i~~~l~~~p~~Rps~~~ll~~~~~~~~~~~~  276 (294)
T 2rku_A          246 IQKMLQTDPTARPTINELLNDEFFTSGYIPA  276 (294)
T ss_dssp             HHHHTCSSGGGSCCGGGGGGSHHHHTSCCCS
T ss_pred             HHHHcccChhhCcCHHHHhhChheecCCcCC
Confidence            9999999999999999999999999865433

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.2e-49  Score=381.19  Aligned_cols=263  Identities=26%  Similarity=0.407  Sum_probs=213.3

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc------hhhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI------NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      .+.++|++.+.||+|+||.||+|++..+++.||+|++...      ....+.+.+|+.++++++|+||     +++++++
T Consensus        23 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~~   97 (345)
T 3hko_A           23 ELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNI-----ARLYEVY   97 (345)
T ss_dssp             HHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTB-----CCEEEEE
T ss_pred             hhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCc-----ceeehhh
Confidence            4457899999999999999999999999999999998643      2344678899999999988777     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcC--------------------------------------CCCCCHHHHHHHHHHH
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNS--------------------------------------YRSFPIDLVRELGRQL  203 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~--------------------------------------~~~l~~~~~~~i~~qi  203 (433)
                      .+.+..|+||||+ +++|.+++....                                      ...+++..++.++.||
T Consensus        98 ~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi  177 (345)
T 3hko_A           98 EDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQI  177 (345)
T ss_dssp             ECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHH
Confidence            9999999999999 999999985210                                      1124678899999999


Q ss_pred             HHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-------CCc
Q 013941          204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-------DHS  276 (433)
Q Consensus       204 ~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-------~~~  276 (433)
                      +.||+|||++||+||||||+|||++.++                         ...+||+|||++.....       ...
T Consensus       178 ~~~l~~LH~~~ivH~Dlkp~NIll~~~~-------------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~  232 (345)
T 3hko_A          178 FSALHYLHNQGICHRDIKPENFLFSTNK-------------------------SFEIKLVDFGLSKEFYKLNNGEYYGMT  232 (345)
T ss_dssp             HHHHHHHHHTTEECCCCCGGGEEESCSS-------------------------SCCEEECCCTTCEEGGGTTCC------
T ss_pred             HHHHHHHHHCCccccCCChhhEEEecCC-------------------------CceEEEeeccccccccccCcccccccc
Confidence            9999999999999999999999996543                         23578888888865322       123


Q ss_pred             ccccCCcccchhhhhC--CCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhc
Q 013941          277 YVVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFR  354 (433)
Q Consensus       277 ~~~gt~~y~aPE~~~~--~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~  354 (433)
                      ...||+.|+|||++.+  ..++.++|||||||++|+|++|..||.+....+....+......++.               
T Consensus       233 ~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~---------------  297 (345)
T 3hko_A          233 TKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFEN---------------  297 (345)
T ss_dssp             --CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTS---------------
T ss_pred             ccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhcccccCC---------------
Confidence            4579999999999976  57899999999999999999999999988877666555443221110               


Q ss_pred             CCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          355 RGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                                                     .....++.++.+||.+||+.||++|||+.|+++||||++...
T Consensus       298 -------------------------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~~  339 (345)
T 3hko_A          298 -------------------------------PNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFSD  339 (345)
T ss_dssp             -------------------------------GGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTSS
T ss_pred             -------------------------------cccccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhhccChH
Confidence                                           011234678999999999999999999999999999997543

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=6.7e-49  Score=377.29  Aligned_cols=281  Identities=28%  Similarity=0.492  Sum_probs=221.6

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.++|.+.+.||+|+||.||+|++..+|+.||||++...   ......+.+|+.+++.++|+|+     +++++++...
T Consensus        21 ~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~   95 (353)
T 3coi_A           21 ELPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENV-----IGLLDVFTPA   95 (353)
T ss_dssp             EEETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTB-----CCCSEEECSC
T ss_pred             ccCceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCc-----ccHhheEecc
Confidence            3457899999999999999999999999999999998643   2334667889999999988877     9999988775


Q ss_pred             Ce------EEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          166 NH------ICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       166 ~~------~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      +.      +|+||||++++|.+++..    .+++..++.++.||+.||+|||++||+||||||+|||++.++        
T Consensus        96 ~~~~~~~~~~lv~e~~~~~l~~~~~~----~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~--------  163 (353)
T 3coi_A           96 SSLRNFYDFYLVMPFMQTDLQKIMGL----KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDC--------  163 (353)
T ss_dssp             SSGGGCCCCEEEEECCSEEGGGTTTS----CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTC--------
T ss_pred             cccccceeEEEEeccccCCHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCC--------
Confidence            43      599999998898877642    599999999999999999999999999999999999996554        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                         .+||+|||++...........||+.|+|||++.+ ..++.++|||||||++|+|++|..||
T Consensus       164 -------------------~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf  224 (353)
T 3coi_A          164 -------------------ELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLF  224 (353)
T ss_dssp             -------------------CEEECSTTCTTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             -------------------cEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                               5788888887765555555689999999999987 57899999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhh-hhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAE-KYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      .+.+..+.+..+.+..+.++..+......... .+......                    .............+.++.+
T Consensus       225 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~  284 (353)
T 3coi_A          225 KGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQ--------------------TPRKDFTQLFPRASPQAAD  284 (353)
T ss_dssp             BSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCB--------------------CSSCCTTTTCTTSCHHHHH
T ss_pred             CCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcC--------------------CCCccHHHhcCCcCHHHHH
Confidence            99998888999988888877665443221111 01000000                    0000011123456789999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||.+||+.||++|||++|+++||||+..
T Consensus       285 li~~~L~~dp~~Rpt~~e~l~hp~f~~~  312 (353)
T 3coi_A          285 LLEKMLELDVDKRLTAAQALTHPFFEPF  312 (353)
T ss_dssp             HHHHHSCSCTTTSCCHHHHHTSGGGTTT
T ss_pred             HHHHHcCCCcccCCCHHHHhcCcchhhc
Confidence            9999999999999999999999999864

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=2.1e-48  Score=369.54  Aligned_cols=280  Identities=31%  Similarity=0.512  Sum_probs=220.1

Q ss_pred             CCCeEEeccccccccEEEEEEEec-CCCcEEEEEEeccch---hhHHHHHHHHHHHHHH---HhCCCCCcceeEecceec
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDN-EKKELVAIKIVRSIN---KYREAAMIEIDVLQRL---ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l---~~~~i~~~~~v~~~~~~~  163 (433)
                      .++|++.+.||+|+||.||+|++. .+++.||+|+++...   .....+.+|+.+++.+   .|+|+     +++++++.
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i-----~~~~~~~~   84 (326)
T 1blx_A           10 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV-----VRLFDVCT   84 (326)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTB-----CCEEEEEE
T ss_pred             hhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCe-----Eeeeeeee
Confidence            468999999999999999999985 678999999986432   1223566788888887   46555     99999886


Q ss_pred             -----cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          164 -----YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       164 -----~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                           .....++||||++++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++       
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~-------  157 (326)
T 1blx_A           85 VSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG-------  157 (326)
T ss_dssp             EEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC-------
T ss_pred             ecccCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCC-------
Confidence                 56789999999988999999887655699999999999999999999999999999999999997655       


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                          .+||+|||++......  .....||..|+|||++.+..++.++|||||||++|+|++|..
T Consensus       158 --------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~  217 (326)
T 1blx_A          158 --------------------QIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKP  217 (326)
T ss_dssp             --------------------CEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             --------------------CEEEecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCC
Confidence                                5677777777654322  233578999999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+......+..+....+..+...+..........+.        .               ............++..+.
T Consensus       218 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~---------------~~~~~~~~~~~~~~~~~~  274 (326)
T 1blx_A          218 LFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFH--------S---------------KSAQPIEKFVTDIDELGK  274 (326)
T ss_dssp             SCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSC--------C---------------CCCCCGGGTCCSCCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhc--------c---------------cCcchhhhccccCCHHHH
Confidence            99999988888888777665543221110000000000        0               000111223356688999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||.+||+.||++|||+.|+++||||++.
T Consensus       275 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  303 (326)
T 1blx_A          275 DLLLKCLTFNPAKRISAYSALSHPYFQDL  303 (326)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHTSGGGTTC
T ss_pred             HHHHHHcCCCcccCCCHHHHhcCcccccc
Confidence            99999999999999999999999999874

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=4.3e-49  Score=365.34  Aligned_cols=261  Identities=26%  Similarity=0.379  Sum_probs=208.8

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      ....++|++.+.||+|+||.||+|++..+++.||||++....    ...+.+.+|+.+++.++|+++     +++++++.
T Consensus         7 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~   81 (276)
T 2h6d_A            7 RVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHI-----IKLYQVIS   81 (276)
T ss_dssp             CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTB-----CCEEEEEE
T ss_pred             cceeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCE-----eEEEEEEe
Confidence            344578999999999999999999999999999999986432    234567889999999988777     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      +.+..++||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+||+++.++           
T Consensus        82 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~-----------  148 (276)
T 2h6d_A           82 TPTDFFMVMEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHM-----------  148 (276)
T ss_dssp             CSSEEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTS-----------
T ss_pred             cCCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCC-----------
Confidence            999999999999 899999998765  699999999999999999999999999999999999997655           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCC-CccchHHHHHHHHHHHHhCCCCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                      .++|+|||++......  .....||+.|+|||++.+..+ +.++||||||+++|+|++|..||.
T Consensus       149 ----------------~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~  212 (276)
T 2h6d_A          149 ----------------NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFD  212 (276)
T ss_dssp             ----------------CEEECCCCGGGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ----------------CEEEeecccccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCC
Confidence                            4667777766543322  123478999999999988765 689999999999999999999998


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ..........+.......                                                  ...++..+.+||
T Consensus       213 ~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~l~~li  242 (276)
T 2h6d_A          213 DEHVPTLFKKIRGGVFYI--------------------------------------------------PEYLNRSVATLL  242 (276)
T ss_dssp             CSSHHHHHHHHHHCCCCC--------------------------------------------------CTTSCHHHHHHH
T ss_pred             CCcHHHHHHHhhcCcccC--------------------------------------------------chhcCHHHHHHH
Confidence            776655544443321111                                                  123466899999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCCCCccccCCC
Q 013941          400 QGLLRYDPAERLKAREALRHPFFTRDVRRCGFP  432 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~hp~f~~~~~~~~~~  432 (433)
                      .+||+.||++|||++|+++||||++...+.-.|
T Consensus       243 ~~~l~~~p~~Rps~~~~l~h~~~~~~~~~~~~p  275 (276)
T 2h6d_A          243 MHMLQVDPLKRATIKDIREHEWFKQDLPSYLFP  275 (276)
T ss_dssp             HHHTCSSGGGSCCHHHHHHSHHHHTTCCGGGCC
T ss_pred             HHHccCChhhCCCHHHHHhChhhccCchhccCC
Confidence            999999999999999999999999876655443

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=8.1e-49  Score=365.43  Aligned_cols=274  Identities=20%  Similarity=0.276  Sum_probs=207.4

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ..+.++|++.+.||+|+||.||+|++..+++.||||++...   ......+.+|+.++..+ .|+||     +++++++.
T Consensus         7 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~i-----v~~~~~~~   81 (289)
T 1x8b_A            7 SRYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHV-----VRYFSAWA   81 (289)
T ss_dssp             CHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTB-----CCEEEEEE
T ss_pred             ccccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCe-----eeeeeeee
Confidence            34556899999999999999999999999999999998743   23456677899999888 77776     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      +.+..++||||+ +++|.+++....  ...+++..++.++.||+.||+|||++||+||||||+|||++.++.....+...
T Consensus        82 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~  161 (289)
T 1x8b_A           82 EDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEG  161 (289)
T ss_dssp             ETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC------------
T ss_pred             cCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCccccccc
Confidence            999999999999 889999997642  13689999999999999999999999999999999999998877554433221


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                      ...        ........++|+|||.+....... ...||+.|+|||++.+. .++.++|||||||++|+|++|.+++.
T Consensus       162 ~~~--------~~~~~~~~~kl~Dfg~~~~~~~~~-~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~  232 (289)
T 1x8b_A          162 DED--------DWASNKVMFKIGDLGHVTRISSPQ-VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPR  232 (289)
T ss_dssp             ----------------CCCEEECCCTTCEETTCSC-CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred             ccc--------cccCCceEEEEcccccccccCCcc-ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCc
Confidence            110        111245579999999988765433 34699999999999876 56789999999999999999998775


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ......   .+..  +..                                               ......++.++.+||
T Consensus       233 ~~~~~~---~~~~--~~~-----------------------------------------------~~~~~~~~~~~~~li  260 (289)
T 1x8b_A          233 NGDQWH---EIRQ--GRL-----------------------------------------------PRIPQVLSQEFTELL  260 (289)
T ss_dssp             SSHHHH---HHHT--TCC-----------------------------------------------CCCSSCCCHHHHHHH
T ss_pred             chhHHH---HHHc--CCC-----------------------------------------------CCCCcccCHHHHHHH
Confidence            432211   1111  000                                               011234577999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          400 QGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .+||+.||++|||+.|+++||||++..+
T Consensus       261 ~~~l~~dp~~Rps~~~ll~h~~~~~~~~  288 (289)
T 1x8b_A          261 KVMIHPDPERRPSAMALVKHSVLLSASR  288 (289)
T ss_dssp             HHHTCSSGGGSCCHHHHHTCTTC-----
T ss_pred             HHHhCCCcccCCCHHHHhhChHhhhhcc
Confidence            9999999999999999999999998654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-49  Score=378.08  Aligned_cols=249  Identities=27%  Similarity=0.473  Sum_probs=207.6

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh---------hHHHHHHHHHHHHHHHhCCCCCcceeEe
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK---------YREAAMIEIDVLQRLARHDIGGTRCVQI  158 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~E~~~l~~l~~~~i~~~~~v~~  158 (433)
                      ..+.++|++.+.||+|+||.||+|++..+++.||||+++....         ....+.+|+.++++++|+||     +++
T Consensus        20 ~~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~I-----v~~   94 (335)
T 3dls_A           20 GEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI-----IKV   94 (335)
T ss_dssp             THHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTB-----CCE
T ss_pred             cccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCE-----eeE
Confidence            3455789999999999999999999999999999999875321         23356679999999988777     999


Q ss_pred             cceeccCCeEEEEEccC-CC-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          159 RNWFDYRNHICIVFEKL-GP-SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       159 ~~~~~~~~~~~lv~e~~-~~-~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                      ++++.+.+.+++||||+ ++ +|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++     
T Consensus        95 ~~~~~~~~~~~lv~e~~~~g~~l~~~~~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~-----  167 (335)
T 3dls_A           95 LDIFENQGFFQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDF-----  167 (335)
T ss_dssp             EEEEECSSEEEEEEECCTTSCBHHHHHHTCC--CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS-----
T ss_pred             EEEEeeCCEEEEEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCC-----
Confidence            99999999999999998 55 9999998765  699999999999999999999999999999999999996554     


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCC-CccchHHHHHHHHHHHHh
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCS  313 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il~el~~  313 (433)
                                            .+||+|||++.......  ....||+.|+|||++.+..+ +.++|||||||++|+|++
T Consensus       168 ----------------------~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~  225 (335)
T 3dls_A          168 ----------------------TIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVF  225 (335)
T ss_dssp             ----------------------CEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------cEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHh
Confidence                                  57788888776544332  34579999999999998876 789999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       314 g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      |..||.......                                                        .........++.
T Consensus       226 g~~pf~~~~~~~--------------------------------------------------------~~~~~~~~~~~~  249 (335)
T 3dls_A          226 EENPFCELEETV--------------------------------------------------------EAAIHPPYLVSK  249 (335)
T ss_dssp             SSCSCSSGGGGT--------------------------------------------------------TTCCCCSSCCCH
T ss_pred             CCCchhhHHHHH--------------------------------------------------------hhccCCCcccCH
Confidence            999996422100                                                        000011223577


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ++.+||.+||+.||++|||++|+++||||++..
T Consensus       250 ~l~~li~~~L~~dP~~Rps~~ell~hp~~~~~~  282 (335)
T 3dls_A          250 ELMSLVSGLLQPVPERRTTLEKLVTDPWVTQPV  282 (335)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHCTTTTCCC
T ss_pred             HHHHHHHHHccCChhhCcCHHHHhcCccccCCc
Confidence            899999999999999999999999999998754

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=6e-48  Score=361.74  Aligned_cols=258  Identities=30%  Similarity=0.500  Sum_probs=213.2

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----------hhHHHHHHHHHHHHHHH-hCCCCCcceeE
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----------KYREAAMIEIDVLQRLA-RHDIGGTRCVQ  157 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----------~~~~~~~~E~~~l~~l~-~~~i~~~~~v~  157 (433)
                      .+.++|++.+.||+|+||.||+|++..+++.||||++....          ...+.+.+|+.+++++. |+++     ++
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i-----~~   88 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNI-----IQ   88 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTB-----CC
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCE-----ee
Confidence            44578999999999999999999999999999999986432          23456778999999996 7776     99


Q ss_pred             ecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          158 IRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       158 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                      +++++...+..++||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+||+++.++     
T Consensus        89 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~-----  161 (298)
T 1phk_A           89 LKDTYETNTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDM-----  161 (298)
T ss_dssp             EEEEEECSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC-----
T ss_pred             eeeeeccCCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCC-----
Confidence            999999999999999999 899999998764  799999999999999999999999999999999999997655     


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhh------CCCCCccchHHHHHHHH
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVIL------GLGWNYPCDLWSVGCIL  308 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~------~~~~~~~~DiwSlG~il  308 (433)
                                            .++|+|||++......  .....||+.|+|||++.      ...++.++|||||||++
T Consensus       162 ----------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l  219 (298)
T 1phk_A          162 ----------------------NIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIM  219 (298)
T ss_dssp             ----------------------CEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHH
T ss_pred             ----------------------cEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHH
Confidence                                  4677777776543322  23357899999999986      44688999999999999


Q ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          309 VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       309 ~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      |+|++|..||...+.......+.......+.                                              ...
T Consensus       220 ~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~  253 (298)
T 1phk_A          220 YTLLAGSPPFWHRKQMLMLRMIMSGNYQFGS----------------------------------------------PEW  253 (298)
T ss_dssp             HHHHHSSCSSCCSSHHHHHHHHHHTCCCCCT----------------------------------------------TTG
T ss_pred             HHHHHCCCCCcCccHHHHHHHHhcCCcccCc----------------------------------------------ccc
Confidence            9999999999887766655554432211110                                              011


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ..++..+.+||.+||+.||++|||+.|+++||||++..
T Consensus       254 ~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (298)
T 1phk_A          254 DDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQYV  291 (298)
T ss_dssp             GGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTTC
T ss_pred             cccCHHHHHHHHHHccCCcccCCCHHHHHhChHhhhcc
Confidence            23467899999999999999999999999999999753

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=2.4e-49  Score=381.41  Aligned_cols=300  Identities=23%  Similarity=0.313  Sum_probs=216.6

Q ss_pred             cCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           86 IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        86 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      .++...++|++.+.||+|+||.||+|++..+++.||+|++...  ....+.+.+|+.+++.++|+||     +++++++.
T Consensus        27 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~  101 (360)
T 3eqc_A           27 VGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI-----VGFYGAFY  101 (360)
T ss_dssp             CCCCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTB-----CCEEEEEE
T ss_pred             ccccccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCE-----EEEeEEEE
Confidence            3455567899999999999999999999999999999998753  3445678899999999988777     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      +++..|+||||+ +++|.+++....  .+++..+..++.||+.||.|||++ ||+||||||+|||++.++          
T Consensus       102 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~----------  169 (360)
T 3eqc_A          102 SDGEISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG----------  169 (360)
T ss_dssp             ETTEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTC----------
T ss_pred             ECCEEEEEEECCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCC----------
Confidence            999999999999 889999998765  699999999999999999999996 999999999999996544          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCcccc-CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH-QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                       .++|+|||++.... .......||+.|+|||++.+..++.++|||||||++|+|++|..||..
T Consensus       170 -----------------~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  232 (360)
T 3eqc_A          170 -----------------EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP  232 (360)
T ss_dssp             -----------------CEEECCCCCCHHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSC
T ss_pred             -----------------CEEEEECCCCcccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                             57888888875432 223345899999999999999999999999999999999999999988


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+..+....+.......+.......... ...+........+ ...............    ........++.++.+||.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~li~  306 (360)
T 3eqc_A          233 PDAKELELMFGCQVEGDAAETPPRPRTP-GRPLNKFGMDSRP-PMAIFELLDYIVNEP----PPKLPSGVFSLEFQDFVN  306 (360)
T ss_dssp             CCHHHHHHHHC--------------------------------CCCHHHHHHHHHHSC----CCCCCTTTSCHHHHHHHH
T ss_pred             CCHHHHHHHhcccccccCCCCCCCcccC-CCcccccccCCCC-cccchhhhhHHhccC----CCCCCcccccHHHHHHHH
Confidence            7765544333221111110000000000 0000000000000 000001111111110    000112346789999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||+.||++|||++|+|+||||++.
T Consensus       307 ~~L~~dP~~Rpt~~ell~hp~~~~~  331 (360)
T 3eqc_A          307 KCLIKNPAERADLKQLMVHAFIKRS  331 (360)
T ss_dssp             HHHCSSTTTSCCHHHHHTSHHHHHH
T ss_pred             HHhhcChhhCCCHHHHhhChHhhcc
Confidence            9999999999999999999999864

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-48  Score=372.16  Aligned_cols=254  Identities=30%  Similarity=0.464  Sum_probs=200.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|++++.||+|+||.||+|.+ .+++.||||++...   ....+.+.+|+.++..+.|+   +++++++++++.+++.
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~---~~~iv~~~~~~~~~~~   83 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQH---SDKIIRLYDYEITDQY   83 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEEC-TTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTT---CTTBCCEEEEEECSSE
T ss_pred             cCEEEEEEEEecCCCeEEEEEEe-CCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhc---CCceEEEeeeEeeCCE
Confidence            46799999999999999999987 46889999998643   23346678899999999872   1345999999999999


Q ss_pred             EEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          168 ICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       168 ~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      +|+|||+.+++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++ ++                
T Consensus        84 ~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~----------------  144 (343)
T 3dbq_A           84 IYMVMECGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DG----------------  144 (343)
T ss_dssp             EEEEECCCSEEHHHHHHHSC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TT----------------
T ss_pred             EEEEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CC----------------
Confidence            99999977999999998765  799999999999999999999999999999999999995 23                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhC-----------CCCCccchHHHHHHHHHHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILG-----------LGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~-----------~~~~~~~DiwSlG~il~el  311 (433)
                                 .+||+|||++.......     ...+||+.|+|||++.+           ..++.++|||||||++|+|
T Consensus       145 -----------~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~el  213 (343)
T 3dbq_A          145 -----------MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYM  213 (343)
T ss_dssp             -----------EEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHH
T ss_pred             -----------cEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHH
Confidence                       47888888776543322     23579999999999965           5688999999999999999


Q ss_pred             HhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       312 ~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      ++|..||.......  ..+......                   .....                          .....
T Consensus       214 l~g~~pf~~~~~~~--~~~~~~~~~-------------------~~~~~--------------------------~~~~~  246 (343)
T 3dbq_A          214 TYGKTPFQQIINQI--SKLHAIIDP-------------------NHEIE--------------------------FPDIP  246 (343)
T ss_dssp             HHSSCTTTTCCSHH--HHHHHHHCT-------------------TSCCC--------------------------CCCCS
T ss_pred             HhCCCcchhhhhHH--HHHHHHhcC-------------------CcccC--------------------------CcccC
Confidence            99999997644321  111111110                   00011                          12233


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +.++.+||.+||+.||++|||+.|+|+||||+..
T Consensus       247 ~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~  280 (343)
T 3dbq_A          247 EKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQ  280 (343)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSC
T ss_pred             CHHHHHHHHHHcCCChhHCCCHHHHHhCcccccc
Confidence            5689999999999999999999999999999854

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=4.2e-49  Score=365.90  Aligned_cols=252  Identities=25%  Similarity=0.425  Sum_probs=186.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|++..+++.||||++....    ...+.+.+|+.++++++|+|+     +++++++.+.+.
T Consensus        11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~   85 (278)
T 3cok_A           11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSI-----LELYNYFEDSNY   85 (278)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTB-----CCEEEEEECSSE
T ss_pred             ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCe-----EeEEEEEccCCe
Confidence            46999999999999999999999999999999986432    223667889999999988777     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .++||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+||+++.++               
T Consensus        86 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~---------------  149 (278)
T 3cok_A           86 VYLVLEMCHNGEMNRYLKNRV-KPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNM---------------  149 (278)
T ss_dssp             EEEEEECCTTEEHHHHHHTCS-SCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTC---------------
T ss_pred             EEEEEecCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCC---------------
Confidence            99999999 889999998653 4699999999999999999999999999999999999997654               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                  .++|+|||++......   .....||+.|+|||++.+..++.++|||||||++|+|++|..||.....
T Consensus       150 ------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  217 (278)
T 3cok_A          150 ------------NIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV  217 (278)
T ss_dssp             ------------CEEECCCTTCEECC----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSC
T ss_pred             ------------CEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhH
Confidence                        4677777777654321   2235789999999999988899999999999999999999999976543


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+..                          .                        .......++.++.+||.+||
T Consensus       218 ~~~~~~~~~--------------------------~------------------------~~~~~~~~~~~~~~li~~~l  247 (278)
T 3cok_A          218 KNTLNKVVL--------------------------A------------------------DYEMPSFLSIEAKDLIHQLL  247 (278)
T ss_dssp             C-----CCS--------------------------S------------------------CCCCCTTSCHHHHHHHHHHS
T ss_pred             HHHHHHHhh--------------------------c------------------------ccCCccccCHHHHHHHHHHc
Confidence            222111000                          0                        00112345678999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCCc
Q 013941          404 RYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      +.||++|||++++++||||++..
T Consensus       248 ~~dp~~Rps~~~~l~h~~~~~~~  270 (278)
T 3cok_A          248 RRNPADRLSLSSVLDHPFMSRNS  270 (278)
T ss_dssp             CSSGGGSCCHHHHTTSTTTC---
T ss_pred             ccCHhhCCCHHHHhcCccccCCC
Confidence            99999999999999999999754

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=2.4e-49  Score=388.62  Aligned_cols=259  Identities=32%  Similarity=0.499  Sum_probs=203.0

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---------hhHHHHHHHHHHHHHHHhCCCCCcceeEec
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---------KYREAAMIEIDVLQRLARHDIGGTRCVQIR  159 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~  159 (433)
                      .+.++|++.+.||+|+||+||+|.+..+++.||||++....         .....+.+|+.++++++|+||     ++++
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~l~  206 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI-----IKIK  206 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTB-----CCCC
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCE-----eeEE
Confidence            34578999999999999999999999999999999987532         111246789999999988887     9999


Q ss_pred             ceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          160 NWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       160 ~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                      +++.. +..|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++       
T Consensus       207 ~~~~~-~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~-------  276 (419)
T 3i6u_A          207 NFFDA-EDYYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQE-------  276 (419)
T ss_dssp             EEEES-SEEEEEEECCTTCBGGGGTSSSC--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSS-------
T ss_pred             EEEec-CceEEEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCC-------
Confidence            98764 5589999999 999999887654  799999999999999999999999999999999999996543       


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhC---CCCCccchHHHHHHHHHHHHh
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILG---LGWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~---~~~~~~~DiwSlG~il~el~~  313 (433)
                                       ....+||+|||++.......  ...+||+.|+|||++.+   ..++.++|||||||++|+|++
T Consensus       277 -----------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~llt  339 (419)
T 3i6u_A          277 -----------------EDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLS  339 (419)
T ss_dssp             -----------------SSCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------CcceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHH
Confidence                             33468999999987654432  34689999999999864   568899999999999999999


Q ss_pred             CCCCCCCCChHHHH-HHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          314 GEALFQTHENLEHL-AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       314 g~~pf~~~~~~~~~-~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      |..||........+ ..+.......                                              .......++
T Consensus       340 g~~pf~~~~~~~~~~~~i~~~~~~~----------------------------------------------~~~~~~~~~  373 (419)
T 3i6u_A          340 GYPPFSEHRTQVSLKDQITSGKYNF----------------------------------------------IPEVWAEVS  373 (419)
T ss_dssp             SSCSSCCCSSSCCHHHHHHTTCCCC----------------------------------------------CHHHHTTSC
T ss_pred             CCCCCCCCcchHHHHHHHhcCCCCC----------------------------------------------CchhhcccC
Confidence            99999765432211 1111111000                                              011223567


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ..+.+||.+||+.||++|||++|+|+||||++.
T Consensus       374 ~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~  406 (419)
T 3i6u_A          374 EKALDLVKKLLVVDPKARFTTEEALRHPWLQDE  406 (419)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCCH
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhCCcccCCh
Confidence            799999999999999999999999999999874

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.1e-48  Score=369.66  Aligned_cols=260  Identities=22%  Similarity=0.407  Sum_probs=209.1

Q ss_pred             cCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceecc
Q 013941           86 IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        86 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~  164 (433)
                      ......++|++.+.||+|+||.||+|++..+++.||||++.......+.+.+|+.+++++ .|+|+     +++++++..
T Consensus        18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i-----~~~~~~~~~   92 (326)
T 2x7f_A           18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNI-----ATYYGAFIK   92 (326)
T ss_dssp             CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTB-----CCEEEEEEE
T ss_pred             hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCe-----eeeeeEEee
Confidence            334556889999999999999999999999999999999986666667888999999999 57766     999998876


Q ss_pred             ------CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          165 ------RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       165 ------~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                            .+.+++||||+ +++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++      
T Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~------  166 (326)
T 2x7f_A           93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENA------  166 (326)
T ss_dssp             CC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTC------
T ss_pred             ccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCC------
Confidence                  56899999999 78999999875445799999999999999999999999999999999999997655      


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhh-----CCCCCccchHHHHHHHHH
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwSlG~il~  309 (433)
                                           .+||+|||++......   .....||+.|+|||++.     +..++.++|||||||++|
T Consensus       167 ---------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~  225 (326)
T 2x7f_A          167 ---------------------EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAI  225 (326)
T ss_dssp             ---------------------CEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHH
T ss_pred             ---------------------CEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHH
Confidence                                 4677777776654322   23357899999999997     456889999999999999


Q ss_pred             HHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccC
Q 013941          310 ELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD  389 (433)
Q Consensus       310 el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (433)
                      +|++|..||.+.........+....  .+.                                              ....
T Consensus       226 ~l~~g~~p~~~~~~~~~~~~~~~~~--~~~----------------------------------------------~~~~  257 (326)
T 2x7f_A          226 EMAEGAPPLCDMHPMRALFLIPRNP--APR----------------------------------------------LKSK  257 (326)
T ss_dssp             HHHHSSCTTTTSCHHHHHHHHHHSC--CCC----------------------------------------------CSCS
T ss_pred             HHHhCCCCCCCCcHHHHHHHhhcCc--ccc----------------------------------------------CCcc
Confidence            9999999998776655443332211  000                                              0113


Q ss_pred             CchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          390 HSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       390 ~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .++..+.+||.+||..||++|||+.|+++||||++.
T Consensus       258 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~~~~  293 (326)
T 2x7f_A          258 KWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQ  293 (326)
T ss_dssp             CSCHHHHHHHHHHCCSSGGGSCCHHHHHTSHHHHCC
T ss_pred             ccCHHHHHHHHHHhccChhhCCCHHHHhhChHHhhC
Confidence            456789999999999999999999999999999875

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1e-48  Score=372.40  Aligned_cols=250  Identities=27%  Similarity=0.363  Sum_probs=194.8

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC--
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN--  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~--  166 (433)
                      .++|++++.||+|+||.||+|++..+++.||||+++..  ....+.+.+|+.++++++|+||     +++++++.+.+  
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~~~~~~~~   79 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGI-----VRYFNAWLETPPE   79 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTB-----CCEEEEEEECCSC
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCE-----eeEEEEEEEeccc
Confidence            45799999999999999999999999999999998743  3345778899999999988877     89888774432  


Q ss_pred             -------------------------------------------------------eEEEEEccC-CCCHHHHHHhcCC-C
Q 013941          167 -------------------------------------------------------HICIVFEKL-GPSLYDFLRKNSY-R  189 (433)
Q Consensus       167 -------------------------------------------------------~~~lv~e~~-~~~L~~~l~~~~~-~  189 (433)
                                                                             .+++||||| +++|.+++..... .
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~  159 (332)
T 3qd2_B           80 KWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLE  159 (332)
T ss_dssp             HHHHHHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGG
T ss_pred             hhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCcc
Confidence                                                                   489999999 9999999986542 2


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCc
Q 013941          190 SFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT  269 (433)
Q Consensus       190 ~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~  269 (433)
                      ..++..++.++.||+.||+|||++||+||||||+|||++.++.                           +||+|||++.
T Consensus       160 ~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~---------------------------~kL~DfG~a~  212 (332)
T 3qd2_B          160 DREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDV---------------------------VKVGDFGLVT  212 (332)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCC---------------------------EEECCCTTCE
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCC---------------------------EEEeecCccc
Confidence            3566678999999999999999999999999999999977665                           4555555554


Q ss_pred             cccCC---------------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH-
Q 013941          270 FEHQD---------------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERV-  333 (433)
Q Consensus       270 ~~~~~---------------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~-  333 (433)
                      .....               .....||+.|+|||++.+..++.++|||||||++|+|++|..|+.     .....+... 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~-----~~~~~~~~~~  287 (332)
T 3qd2_B          213 AMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM-----ERVRIITDVR  287 (332)
T ss_dssp             ECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH-----HHHHHHHHHH
T ss_pred             ccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChh-----HHHHHHHHhh
Confidence            33221               123479999999999999999999999999999999999876642     111111111 


Q ss_pred             hcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCH
Q 013941          334 LGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKA  413 (433)
Q Consensus       334 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta  413 (433)
                      ....|..                                               ....++++.+||.+||+.||++|||+
T Consensus       288 ~~~~~~~-----------------------------------------------~~~~~~~~~~li~~~l~~~p~~Rps~  320 (332)
T 3qd2_B          288 NLKFPLL-----------------------------------------------FTQKYPQEHMMVQDMLSPSPTERPEA  320 (332)
T ss_dssp             TTCCCHH-----------------------------------------------HHHHCHHHHHHHHHHHCSSGGGSCCH
T ss_pred             ccCCCcc-----------------------------------------------cccCChhHHHHHHHHccCCCCcCCCH
Confidence            1111110                                               01124578899999999999999999


Q ss_pred             HHHhcCCCCCC
Q 013941          414 REALRHPFFTR  424 (433)
Q Consensus       414 ~ell~hp~f~~  424 (433)
                      +|+++||||++
T Consensus       321 ~~~l~~~~f~~  331 (332)
T 3qd2_B          321 TDIIENAIFEN  331 (332)
T ss_dssp             HHHHHSTTCCC
T ss_pred             HHHhhchhhhc
Confidence            99999999985

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=6.2e-48  Score=366.99  Aligned_cols=281  Identities=25%  Similarity=0.520  Sum_probs=212.6

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHH-hCCCCCcceeEecceecc--CCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDY--RNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~--~~~  167 (433)
                      .++|++.+.||+|+||.||+|++..+++.||||+++...  .+.+.+|+.+++++. |+++     +++++++.+  ...
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~E~~~l~~l~~~~~i-----~~~~~~~~~~~~~~  107 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--KKKIKREIKILENLRGGPNI-----ITLADIVKDPVSRT  107 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC--HHHHHHHHHHHHHHTTSTTB-----CCEEEEEECTTTCC
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc--hHHHHHHHHHHHHcCCCCCE-----EEeeeeeccCCCCc
Confidence            367999999999999999999999999999999987433  466889999999997 6666     999999887  678


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .++||||+ +++|.+++.     .+++..++.++.||+.||+|||++||+||||||+|||++.++               
T Consensus       108 ~~lv~e~~~~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~---------------  167 (330)
T 3nsz_A          108 PALVFEHVNNTDFKQLYQ-----TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEH---------------  167 (330)
T ss_dssp             EEEEEECCCCCCHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTT---------------
T ss_pred             eEEEEeccCchhHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCC---------------
Confidence            99999999 899998874     388999999999999999999999999999999999997543               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCC-CCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQ-THE  322 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~-~~~  322 (433)
                                 ..+||+|||++.....  ......||..|+|||++.+ ..++.++|||||||++|+|++|..||. +..
T Consensus       168 -----------~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~  236 (330)
T 3nsz_A          168 -----------RKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHD  236 (330)
T ss_dssp             -----------TEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSS
T ss_pred             -----------CEEEEEeCCCceEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCc
Confidence                       2578888888865432  2234578999999999987 568999999999999999999999984 445


Q ss_pred             hHHHHHHHHHHhcCCChhhH-Hhhh----hhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          323 NLEHLAMMERVLGPLPHHMV-IRAD----RRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      ..+.+..+....+..+..-. ....    ..............|..                  .........++.++.+
T Consensus       237 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~  298 (330)
T 3nsz_A          237 NYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWER------------------FVHSENQHLVSPEALD  298 (330)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGG------------------GCCTTTGGGCCHHHHH
T ss_pred             hHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhh------------------hccccccccCCHHHHH
Confidence            55666666555442111000 0000    00000000000000000                  0001112235789999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||.+||+.||++|||++|+|+||||++-.+
T Consensus       299 li~~~L~~dP~~Rpta~e~l~hp~f~~~~~  328 (330)
T 3nsz_A          299 FLDKLLRYDHQSRLTAREAMEHPYFYTVVK  328 (330)
T ss_dssp             HHHTTSCSSGGGSCCHHHHHTSGGGTTCC-
T ss_pred             HHHHHhcCCcccCCCHHHHhcCccHhhhcc
Confidence            999999999999999999999999997543

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-48  Score=366.59  Aligned_cols=257  Identities=24%  Similarity=0.435  Sum_probs=208.1

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-----hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee--
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF--  162 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~--  162 (433)
                      +.++|++.+.||+|+||.||+|.+..+++.||+|++....     .....+.+|+.++++++|+|+     +++++++  
T Consensus         3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~   77 (305)
T 2wtk_C            3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNV-----IQLVDVLYN   77 (305)
T ss_dssp             --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTB-----CCEEEEEEC
T ss_pred             cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCe-----eEEEEEEEc
Confidence            4578999999999999999999999999999999997532     344678899999999988777     9999988  


Q ss_pred             ccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          163 DYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       163 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      .+.+..|+||||+.++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++           
T Consensus        78 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~-----------  146 (305)
T 2wtk_C           78 EEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGG-----------  146 (305)
T ss_dssp             C---CEEEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC-----------
T ss_pred             CCCCeEEEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCC-----------
Confidence            456789999999966688888876666899999999999999999999999999999999999997655           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCC--CCccchHHHHHHHHHHHHhCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLG--WNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~--~~~~~DiwSlG~il~el~~g~  315 (433)
                                      .++|+|||.+......     .....||..|+|||++.+..  ++.++|||||||++|+|++|.
T Consensus       147 ----------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~  210 (305)
T 2wtk_C          147 ----------------TLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGL  210 (305)
T ss_dssp             ----------------CEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSS
T ss_pred             ----------------cEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCC
Confidence                            4666666666543211     12346899999999998754  378999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||.+.+.......+......                                                  ....++..+
T Consensus       211 ~p~~~~~~~~~~~~i~~~~~~--------------------------------------------------~~~~~~~~l  240 (305)
T 2wtk_C          211 YPFEGDNIYKLFENIGKGSYA--------------------------------------------------IPGDCGPPL  240 (305)
T ss_dssp             CSCCCSSHHHHHHHHHHCCCC--------------------------------------------------CCSSSCHHH
T ss_pred             CCCCCchHHHHHHHHhcCCCC--------------------------------------------------CCCccCHHH
Confidence            999987766555444332111                                                  112446789


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      .+||.+||+.||++|||++|+++||||++....
T Consensus       241 ~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~~  273 (305)
T 2wtk_C          241 SDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPP  273 (305)
T ss_dssp             HHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCCC
T ss_pred             HHHHHHHccCChhhCCCHHHHhcCcccccCCCC
Confidence            999999999999999999999999999876443

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=5.3e-48  Score=375.49  Aligned_cols=252  Identities=29%  Similarity=0.458  Sum_probs=201.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+|++.+.||+|+||.||+|.+.. ++.||||++...   ....+.+.+|+.++.++.|+   ++|++++++++...+.+
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~---~~~iv~~~~~~~~~~~~  131 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQH---SDKIIRLYDYEITDQYI  131 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTT---CTTBCCEEEEEECSSEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccC---CCeEEEEEEEEecCCEE
Confidence            469999999999999999999765 889999998643   23456788999999999862   24559999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      |+|||+.+++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++ ++                 
T Consensus       132 ~lv~E~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~-----------------  191 (390)
T 2zmd_A          132 YMVMECGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DG-----------------  191 (390)
T ss_dssp             EEEEECCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SS-----------------
T ss_pred             EEEEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CC-----------------
Confidence            9999966999999998765  789999999999999999999999999999999999994 23                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhC-----------CCCCccchHHHHHHHHHHHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILG-----------LGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~-----------~~~~~~~DiwSlG~il~el~  312 (433)
                                .+||+|||++......     ....+||+.|+|||++.+           ..++.++|||||||++|+|+
T Consensus       192 ----------~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell  261 (390)
T 2zmd_A          192 ----------MLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMT  261 (390)
T ss_dssp             ----------CEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHH
T ss_pred             ----------eEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHH
Confidence                      4788888887654322     123579999999999976           36889999999999999999


Q ss_pred             hCCCCCCCCChH-HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          313 SGEALFQTHENL-EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       313 ~g~~pf~~~~~~-~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      +|..||...... ..+..+.   ..                   .....                          .....
T Consensus       262 ~G~~Pf~~~~~~~~~~~~~~---~~-------------------~~~~~--------------------------~~~~~  293 (390)
T 2zmd_A          262 YGKTPFQQIINQISKLHAII---DP-------------------NHEIE--------------------------FPDIP  293 (390)
T ss_dssp             HSSCTTTTCCCHHHHHHHHH---CT-------------------TSCCC--------------------------CCCCS
T ss_pred             HCCCcchhhhHHHHHHHHHh---Cc-------------------cccCC--------------------------CCccc
Confidence            999999765432 2222111   10                   00001                          11223


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +.++.+||.+||+.||++|||+.|+|+||||+..
T Consensus       294 ~~~~~~li~~~L~~dP~~Rps~~ell~hp~~~~~  327 (390)
T 2zmd_A          294 EKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQ  327 (390)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSC
T ss_pred             hHHHHHHHHHHcccChhhCCCHHHHhhCcCcccc
Confidence            5689999999999999999999999999999864

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.8e-48  Score=363.43  Aligned_cols=258  Identities=24%  Similarity=0.389  Sum_probs=207.0

Q ss_pred             ecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           85 AIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        85 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      .+|+.+.++|++++.||+|+||.||+|++..+++.||+|++...    ....+.+.+|+.++.+++|+|+     +++++
T Consensus         4 ~~g~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i-----v~~~~   78 (294)
T 4eqm_A            4 MIGKIINERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNI-----VSMID   78 (294)
T ss_dssp             CCSSCEETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTB-----CCEEE
T ss_pred             chhhHhhccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCC-----ceEEE
Confidence            45778889999999999999999999999999999999998532    2344677889999999988877     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      ++.+++.+|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++        
T Consensus        79 ~~~~~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~--------  148 (294)
T 4eqm_A           79 VDEEDDCYYLVMEYIEGPTLSEYIESHG--PLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNK--------  148 (294)
T ss_dssp             EEECSSEEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS--------
T ss_pred             eeeeCCeEEEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC--------
Confidence            999999999999999 889999998765  799999999999999999999999999999999999997655        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                         .+||+|||++......    .....||+.|+|||++.+..++.++|||||||++|+|++|+
T Consensus       149 -------------------~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~  209 (294)
T 4eqm_A          149 -------------------TLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGE  209 (294)
T ss_dssp             -------------------CEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------CEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCC
Confidence                               5677777777654322    22357999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||.+.+.........  ....|                                           .........++..+
T Consensus       210 ~pf~~~~~~~~~~~~~--~~~~~-------------------------------------------~~~~~~~~~~~~~l  244 (294)
T 4eqm_A          210 PPFNGETAVSIAIKHI--QDSVP-------------------------------------------NVTTDVRKDIPQSL  244 (294)
T ss_dssp             CSSCSSCHHHHHHHHH--SSCCC-------------------------------------------CHHHHSCTTSCHHH
T ss_pred             CCCCCCChHHHHHHHh--hccCC-------------------------------------------CcchhcccCCCHHH
Confidence            9998877654432221  11111                                           11112234567899


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPF  421 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~  421 (433)
                      .++|.+||+.||++||+..+.+.+.|
T Consensus       245 ~~li~~~l~~dp~~R~~~~~~l~~~l  270 (294)
T 4eqm_A          245 SNVILRATEKDKANRYKTIQEMKDDL  270 (294)
T ss_dssp             HHHHHHHSCSSGGGSCSSHHHHHHHH
T ss_pred             HHHHHHHhcCCHhHccccHHHHHHHH
Confidence            99999999999999995444444444

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.8e-48  Score=369.59  Aligned_cols=260  Identities=31%  Similarity=0.481  Sum_probs=207.6

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---------hhHHHHHHHHHHHHHHHhCCCCCcceeEe
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---------KYREAAMIEIDVLQRLARHDIGGTRCVQI  158 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~  158 (433)
                      ..+.++|++.+.||+|+||.||+|++..+++.||||++....         .....+.+|+.+++++.|+||     +++
T Consensus         6 ~~l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~   80 (322)
T 2ycf_A            6 KALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI-----IKI   80 (322)
T ss_dssp             HHHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTB-----CCE
T ss_pred             hhhhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCC-----ceE
Confidence            345578999999999999999999999999999999986432         122346789999999988877     999


Q ss_pred             cceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       159 ~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      ++++..++ .|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++      
T Consensus        81 ~~~~~~~~-~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~------  151 (322)
T 2ycf_A           81 KNFFDAED-YYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQE------  151 (322)
T ss_dssp             EEEEESSS-EEEEEECCTTEETHHHHSTTC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSS------
T ss_pred             eeEEcCCc-eEEEEecCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCC------
Confidence            99887655 89999999 889999987654  799999999999999999999999999999999999997644      


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhh---CCCCCccchHHHHHHHHHHHH
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~---~~~~~~~~DiwSlG~il~el~  312 (433)
                                        ....+||+|||++.......  ....||+.|+|||++.   ...++.++|||||||++|+|+
T Consensus       152 ------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~  213 (322)
T 2ycf_A          152 ------------------EDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICL  213 (322)
T ss_dssp             ------------------SSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHH
Confidence                              23458999999987654432  2357999999999974   456899999999999999999


Q ss_pred             hCCCCCCCCChHH-HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          313 SGEALFQTHENLE-HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       313 ~g~~pf~~~~~~~-~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      +|..||....... ....+........                                              ......+
T Consensus       214 ~g~~pf~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~  247 (322)
T 2ycf_A          214 SGYPPFSEHRTQVSLKDQITSGKYNFI----------------------------------------------PEVWAEV  247 (322)
T ss_dssp             HSSCSSCSTTCSSCHHHHHHHTCCCCC----------------------------------------------HHHHTTS
T ss_pred             hCCCCCcccchHHHHHHHHHhCccccC----------------------------------------------chhhhhc
Confidence            9999997654321 1111211110000                                              1112345


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +..+.+||.+||+.||++|||++|+++||||++.
T Consensus       248 ~~~~~~li~~~l~~dP~~Rps~~~~l~h~~~~~~  281 (322)
T 2ycf_A          248 SEKALDLVKKLLVVDPKARFTTEEALRHPWLQDE  281 (322)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGCCH
T ss_pred             CHHHHHHHHHHcccCHhhCCCHHHHhhCcCcCCH
Confidence            7789999999999999999999999999999864

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=3.9e-49  Score=372.25  Aligned_cols=258  Identities=23%  Similarity=0.313  Sum_probs=207.1

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      ...+.++|++.+.||+|+||.||+|++..+++.||||+++...    .....+.+|+.++++++|+||     +++++++
T Consensus         7 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~   81 (311)
T 3ork_A            7 PSHLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAI-----VAVYDTG   81 (311)
T ss_dssp             CSEETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTB-----CCEEEEE
T ss_pred             cceecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCc-----ceEEEee
Confidence            4566789999999999999999999999999999999997532    334567789998888888777     9999988


Q ss_pred             ccCC----eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          163 DYRN----HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       163 ~~~~----~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      ....    ..|+||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++      
T Consensus        82 ~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~------  153 (311)
T 3ork_A           82 EAETPAGPLPYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATN------  153 (311)
T ss_dssp             EEEETTEEEEEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTS------
T ss_pred             eccCCCCcccEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCC------
Confidence            7543    459999999 899999998765  799999999999999999999999999999999999997665      


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHH
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  311 (433)
                                           .+||+|||++......      .....||+.|+|||++.+..++.++|||||||++|+|
T Consensus       154 ---------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~l  212 (311)
T 3ork_A          154 ---------------------AVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEV  212 (311)
T ss_dssp             ---------------------CEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred             ---------------------CEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHH
Confidence                                 4667777766543221      1234789999999999999999999999999999999


Q ss_pred             HhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       312 ~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      ++|+.||.+.........+.......+                                              ......+
T Consensus       213 l~g~~pf~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~  246 (311)
T 3ork_A          213 LTGEPPFTGDSPVSVAYQHVREDPIPP----------------------------------------------SARHEGL  246 (311)
T ss_dssp             HHSSCSCCCSSHHHHHHHHHHCCCCCH----------------------------------------------HHHSTTC
T ss_pred             HhCCCCCCCCChHHHHHHHhcCCCCCc----------------------------------------------ccccCCC
Confidence            999999988776665444333211110                                              1112345


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      +.++.+||.+||+.||++||++.+++.|+|++.
T Consensus       247 ~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~  279 (311)
T 3ork_A          247 SADLDAVVLKALAKNPENRYQTAAEMRADLVRV  279 (311)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence            778999999999999999999999999999974

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=8.7e-48  Score=359.30  Aligned_cols=253  Identities=23%  Similarity=0.407  Sum_probs=204.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc----
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY----  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~----  164 (433)
                      ..|++.+.||+|+||.||+|.+..++..||+|++...   ....+.+.+|+.+++.++|+||     +++++++..    
T Consensus        26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~~  100 (290)
T 1t4h_A           26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI-----VRFYDSWESTVKG  100 (290)
T ss_dssp             CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEEEEESSS
T ss_pred             eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCe-----eeeeeeeccccCC
Confidence            4589999999999999999999999999999998643   3345667889999999988877     899888764    


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccCcccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      ...+++||||+ +++|.+++....  .+++..++.++.||+.||.|||++|  |+||||||+|||++.            
T Consensus       101 ~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~------------  166 (290)
T 1t4h_A          101 KKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITG------------  166 (290)
T ss_dssp             CEEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESS------------
T ss_pred             CceEEEEEEecCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEEC------------
Confidence            46799999999 889999998764  6999999999999999999999999  999999999999952            


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                    .+..+||+|||++....... ....||+.|+|||++.+ .++.++|||||||++|+|++|..||..
T Consensus       167 --------------~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~  231 (290)
T 1t4h_A          167 --------------PTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSE  231 (290)
T ss_dssp             --------------TTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             --------------CCCCEEEeeCCCcccccccccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCC
Confidence                          23357888888876544332 33579999999998875 589999999999999999999999987


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ............. +..+                                              .......++++.+||.
T Consensus       232 ~~~~~~~~~~~~~-~~~~----------------------------------------------~~~~~~~~~~l~~li~  264 (290)
T 1t4h_A          232 CQNAAQIYRRVTS-GVKP----------------------------------------------ASFDKVAIPEVKEIIE  264 (290)
T ss_dssp             CSSHHHHHHHHTT-TCCC----------------------------------------------GGGGGCCCHHHHHHHH
T ss_pred             cCcHHHHHHHHhc-cCCc----------------------------------------------cccCCCCCHHHHHHHH
Confidence            5554433221110 0000                                              0112234568999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||+.||++|||++|+++||||+++
T Consensus       265 ~~l~~dp~~Rps~~ell~h~~f~~~  289 (290)
T 1t4h_A          265 GCIRQNKDERYSIKDLLNHAFFQEE  289 (290)
T ss_dssp             HHSCSSGGGSCCHHHHHTSGGGC--
T ss_pred             HHccCChhhCCCHHHHhhCcccccC
Confidence            9999999999999999999999975

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=2.2e-48  Score=360.48  Aligned_cols=255  Identities=22%  Similarity=0.394  Sum_probs=207.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....  ...+.+.+|+.+++.+.|+++     +++++++.+++..|
T Consensus         7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~   81 (276)
T 2yex_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENV-----VKFYGHRREGNIQY   81 (276)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTB-----CCEEEEEEETTEEE
T ss_pred             cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCc-----eeeeeEEEcCCEEE
Confidence            57999999999999999999999999999999986432  345678889999999988777     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+||+++.++                 
T Consensus        82 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~-----------------  142 (276)
T 2yex_A           82 LFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERD-----------------  142 (276)
T ss_dssp             EEEECCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC-----------------
T ss_pred             EEEEecCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCC-----------------
Confidence            999999 889999886543  699999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCC-CccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                .++|+|||.+......     .....||..|+|||++.+..+ +.++|||||||++|+|++|..||....
T Consensus       143 ----------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  212 (276)
T 2yex_A          143 ----------NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  212 (276)
T ss_dssp             ----------CEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSC
T ss_pred             ----------CEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCc
Confidence                      4677777776543211     233578999999999988765 789999999999999999999997654


Q ss_pred             hHHH-HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          323 NLEH-LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       323 ~~~~-~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      .... ...+.....                                                .......++..+.+||.+
T Consensus       213 ~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~li~~  244 (276)
T 2yex_A          213 DSCQEYSDWKEKKT------------------------------------------------YLNPWKKIDSAPLALLHK  244 (276)
T ss_dssp             TTSHHHHHHHTTCT------------------------------------------------TSTTGGGSCHHHHHHHHH
T ss_pred             hHHHHHHHhhhccc------------------------------------------------ccCchhhcCHHHHHHHHH
Confidence            3211 111110000                                                000112356789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      ||+.||++|||++|+++||||++..++
T Consensus       245 ~l~~~p~~Rps~~~il~~~~~~~~~~~  271 (276)
T 2yex_A          245 ILVENPSARITIPDIKKDRWYNKPLKK  271 (276)
T ss_dssp             HSCSSTTTSCCHHHHTTCTTTTCCCC-
T ss_pred             HCCCCchhCCCHHHHhcCccccChhhc
Confidence            999999999999999999999987654

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=1.4e-48  Score=372.45  Aligned_cols=268  Identities=26%  Similarity=0.422  Sum_probs=186.1

Q ss_pred             CccCCCeEEec-cccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHH-HHHHHHhCCCCCcceeEecceecc-
Q 013941           88 ENLTPRYRILS-KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEID-VLQRLARHDIGGTRCVQIRNWFDY-  164 (433)
Q Consensus        88 ~~~~~~y~~~~-~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~-~l~~l~~~~i~~~~~v~~~~~~~~-  164 (433)
                      ..+.++|++.+ .||+|+||.||+|++..+++.||||++......    .+|+. .++.+.|+|+     +++++++.. 
T Consensus        24 ~~~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~e~~~~~~~~~h~~i-----~~~~~~~~~~   94 (336)
T 3fhr_A           24 YAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKA----RQEVDHHWQASGGPHI-----VCILDVYENM   94 (336)
T ss_dssp             SCGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHH----HHHHHHHHHHTTSTTB-----CCEEEEEEEE
T ss_pred             ccccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHH----HHHHHHHHHhcCCCCh-----HHHHHHHhhc
Confidence            34567899966 599999999999999999999999999764332    22333 3455566665     888888875 


Q ss_pred             ---CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          165 ---RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       165 ---~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                         ...+++||||+ +++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.++         
T Consensus        95 ~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~---------  165 (336)
T 3fhr_A           95 HHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKE---------  165 (336)
T ss_dssp             ETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSS---------
T ss_pred             cCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecC---------
Confidence               56699999999 88999999877656799999999999999999999999999999999999997543         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                     ....+||+|||++...... .....||+.|+|||++.+..++.++|||||||++|+|++|..||.
T Consensus       166 ---------------~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  230 (336)
T 3fhr_A          166 ---------------KDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFY  230 (336)
T ss_dssp             ---------------TTCCEEECCCTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred             ---------------CCceEEEeccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                           3446899999998755433 234678999999999988889999999999999999999999997


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      +.........+......                    ...                      .........++.++.+||
T Consensus       231 ~~~~~~~~~~~~~~~~~--------------------~~~----------------------~~~~~~~~~~~~~~~~li  268 (336)
T 3fhr_A          231 SNTGQAISPGMKRRIRL--------------------GQY----------------------GFPNPEWSEVSEDAKQLI  268 (336)
T ss_dssp             --------------------------------------------------------------CCCTTTSTTCCHHHHHHH
T ss_pred             CccchhhhhhHHHhhhc--------------------ccc----------------------ccCchhhccCCHHHHHHH
Confidence            65543321111110000                    000                      000111235678999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCCCCccccC
Q 013941          400 QGLLRYDPAERLKAREALRHPFFTRDVRRCG  430 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~hp~f~~~~~~~~  430 (433)
                      .+||+.||++|||++|+++||||++......
T Consensus       269 ~~~L~~dP~~Rpt~~ell~hp~~~~~~~~~~  299 (336)
T 3fhr_A          269 RLLLKTDPTERLTITQFMNHPWINQSMVVPQ  299 (336)
T ss_dssp             HHHSCSSGGGSCCHHHHHHSHHHHTGGGSCC
T ss_pred             HHHCCCChhHCcCHHHHhcCccccccccCCC
Confidence            9999999999999999999999998654433

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=2.1e-50  Score=391.17  Aligned_cols=249  Identities=18%  Similarity=0.235  Sum_probs=194.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEec-------
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIR-------  159 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~-------  159 (433)
                      .++|++.+.||+|+||.||+|++..+|+.||||++...    ....+.+.+|+.+++.+..  +.|+|+++++       
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~--l~hpniv~~~~~~~~~~  149 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG--IKNQKQAKVHLRFIFPF  149 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTT--CCSHHHHHHHHCBCCCS
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccc--cCCHHHHHHHhhhhhhh
Confidence            46899999999999999999999999999999998632    2345678889966655532  2345558887       


Q ss_pred             ceeccCC-----------------eEEEEEccCCCCHHHHHHhcCCCCCC-------HHHHHHHHHHHHHHHHHHHhCCc
Q 013941          160 NWFDYRN-----------------HICIVFEKLGPSLYDFLRKNSYRSFP-------IDLVRELGRQLLESVAFMHELRL  215 (433)
Q Consensus       160 ~~~~~~~-----------------~~~lv~e~~~~~L~~~l~~~~~~~l~-------~~~~~~i~~qi~~aL~~LH~~~i  215 (433)
                      ++++..+                 ..|+||||++|+|.+++....  .++       +..+..++.||+.||+|||++||
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~--~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  227 (377)
T 3byv_A          150 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLL--SHSSTHKSLVHHARLQLTLQVIRLLASLHHYGL  227 (377)
T ss_dssp             EEEECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHH--HTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             hhhhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhcc--ccccccccccHHHHHHHHHHHHHHHHHHHhCCe
Confidence            5554443                 389999999889999998643  344       47888899999999999999999


Q ss_pred             EecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC--
Q 013941          216 IHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL--  293 (433)
Q Consensus       216 vHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~--  293 (433)
                      +||||||+|||++.++                           .+||+|||++...........| +.|+|||++.+.  
T Consensus       228 vHrDikp~NIll~~~~---------------------------~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~  279 (377)
T 3byv_A          228 VHTYLRPVDIVLDQRG---------------------------GVFLTGFEHLVRDGARVVSSVS-RGFEPPELEARRAT  279 (377)
T ss_dssp             ECSCCCGGGEEECTTC---------------------------CEEECCGGGCEETTCEEECCCC-TTCCCHHHHHHHTS
T ss_pred             ecCCCCHHHEEEcCCC---------------------------CEEEEechhheecCCcccCCCC-cCccChhhhccccc
Confidence            9999999999997655                           5677777777655544455678 999999999887  


Q ss_pred             ---------CCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCC
Q 013941          294 ---------GWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDG  364 (433)
Q Consensus       294 ---------~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (433)
                               .++.++|||||||++|||++|+.||.+.......                                     
T Consensus       280 ~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~-------------------------------------  322 (377)
T 3byv_A          280 ISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGS-------------------------------------  322 (377)
T ss_dssp             THHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCS-------------------------------------
T ss_pred             ccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccch-------------------------------------
Confidence                     7999999999999999999999999654321100                                     


Q ss_pred             CCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          365 ATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                                       .........++.++.+||.+||+.||++|||+.|+++||||++.
T Consensus       323 -----------------~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~  366 (377)
T 3byv_A          323 -----------------EWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQL  366 (377)
T ss_dssp             -----------------GGGGSSCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHH
T ss_pred             -----------------hhhhhhccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHH
Confidence                             00011123557799999999999999999999999999999864

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1e-47  Score=363.78  Aligned_cols=282  Identities=21%  Similarity=0.323  Sum_probs=209.7

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      .+.++|++.+.||+|+||+||+|++..+++.||||++....  ...+.+.+|+.++++++|+|+     +++++++...+
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~   80 (319)
T 4euu_A            6 TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNI-----VKLFAIEEETT   80 (319)
T ss_dssp             CSSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTB-----CCEEEEEECTT
T ss_pred             CCCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCc-----ceEEEEeecCC
Confidence            45578999999999999999999999999999999997533  334667899999999988877     99999887654


Q ss_pred             --eEEEEEccC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          167 --HICIVFEKL-GPSLYDFLRKNSY-RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       167 --~~~lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                        ..|+||||+ +++|.+++..... ..+++..++.++.||+.||+|||++||+||||||+|||+....           
T Consensus        81 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~-----------  149 (319)
T 4euu_A           81 TRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGE-----------  149 (319)
T ss_dssp             TCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECT-----------
T ss_pred             CceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccC-----------
Confidence              889999999 8999999986432 2399999999999999999999999999999999999984321           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhh--------CCCCCccchHHHHHHHHHHHH
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVIL--------GLGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~--------~~~~~~~~DiwSlG~il~el~  312 (433)
                                  +....+||+|||++.......  ....||+.|+|||++.        +..++.++|||||||++|||+
T Consensus       150 ------------~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~  217 (319)
T 4euu_A          150 ------------DGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAA  217 (319)
T ss_dssp             ------------TSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHH
T ss_pred             ------------CCCceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHH
Confidence                        234468899999887654332  3457999999999987        567899999999999999999


Q ss_pred             hCCCCCCCCChH-HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          313 SGEALFQTHENL-EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       313 ~g~~pf~~~~~~-~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      +|..||...... .....+.......|...+......      ......|.....                .........
T Consensus       218 ~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------~~~~~~~~~~~~----------------~~~~~~~~~  275 (319)
T 4euu_A          218 TGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKA------ENGPIDWSGDMP----------------VSCSLSRGL  275 (319)
T ss_dssp             HSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECS------TTCCEEEESSCC----------------TTCSSCHHH
T ss_pred             hCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcc------cCCccccCccCC----------------cccccchhH
Confidence            999999754322 122222333222222111100000      000111111000                000112234


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcCC
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRHP  420 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~hp  420 (433)
                      +..+.+||.+||+.||++|||++|+|+||
T Consensus       276 ~~~l~~ll~~~L~~dP~~R~s~~ell~h~  304 (319)
T 4euu_A          276 QVLLTPVLANILEADQEKCWGFDQFFAET  304 (319)
T ss_dssp             HHHHHHHHHHHSCCCTTTSCCHHHHHHHH
T ss_pred             HHHhHHHHHHhccCChhhhccHHHhhhcc
Confidence            66899999999999999999999999987

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=9.2e-49  Score=378.85  Aligned_cols=259  Identities=15%  Similarity=0.118  Sum_probs=190.6

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHH--hCCCCCcceeEec-------
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLA--RHDIGGTRCVQIR-------  159 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~--~~~i~~~~~v~~~-------  159 (433)
                      .|++.+.||+|+||.||+|++..+++.||||++....    ...+.+.+|+.+++.+.  |+|+     ++++       
T Consensus        63 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~i-----v~~~~~~~~p~  137 (371)
T 3q60_A           63 KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEE-----ARDRRRLLLPS  137 (371)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC---------------CBCCCC
T ss_pred             eeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhh-----hhhceeEEeee
Confidence            5999999999999999999999999999999998633    34556778877777776  6665     5533       


Q ss_pred             ceeccC-----------------CeEEEEEccCCCCHHHHHHhcCCCCCCHHHH------HHHHHHHHHHHHHHHhCCcE
Q 013941          160 NWFDYR-----------------NHICIVFEKLGPSLYDFLRKNSYRSFPIDLV------RELGRQLLESVAFMHELRLI  216 (433)
Q Consensus       160 ~~~~~~-----------------~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~------~~i~~qi~~aL~~LH~~~iv  216 (433)
                      +++...                 ..+|+||||+.++|.+++.... ..+++...      ..++.||+.||+|||++||+
T Consensus       138 d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~iv  216 (371)
T 3q60_A          138 DAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLD-FVYVFRGDEGILALHILTAQLIRLAANLQSKGLV  216 (371)
T ss_dssp             EEEEETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             hheecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhc-cccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCc
Confidence            333221                 4589999999899999998643 13444555      67779999999999999999


Q ss_pred             ecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC--CC
Q 013941          217 HTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG--LG  294 (433)
Q Consensus       217 HrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~--~~  294 (433)
                      ||||||+|||++.+|                           .+||+|||++...........+|+.|+|||++.+  ..
T Consensus       217 HrDikp~NIll~~~~---------------------------~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~  269 (371)
T 3q60_A          217 HGHFTPDNLFIMPDG---------------------------RLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTAT  269 (371)
T ss_dssp             ETTCSGGGEEECTTS---------------------------CEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEE
T ss_pred             cCcCCHHHEEECCCC---------------------------CEEEEecceeeecCCCccCccCCcCCcChhhccCCCCC
Confidence            999999999997655                           4677777777655444434577899999999987  67


Q ss_pred             CCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHH
Q 013941          295 WNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV  374 (433)
Q Consensus       295 ~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (433)
                      ++.++|||||||++|+|++|+.||.+......                        ..+..   .....           
T Consensus       270 ~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~------------------------~~~~~---~~~~~-----------  311 (371)
T 3q60_A          270 FTHALNAWQLGLSIYRVWCLFLPFGLVTPGIK------------------------GSWKR---PSLRV-----------  311 (371)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCT------------------------TCCCB---CCTTS-----------
T ss_pred             cCccccHHHHHHHHHHHHhCCCCCCCcCcccc------------------------cchhh---hhhhh-----------
Confidence            99999999999999999999999976532100                        00000   00000           


Q ss_pred             HHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                         .............++..+.+||.+||+.||++|||+.|+|+||||++.
T Consensus       312 ---~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  359 (371)
T 3q60_A          312 ---PGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQL  359 (371)
T ss_dssp             ---CCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHH
T ss_pred             ---ccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHH
Confidence               000001111224568899999999999999999999999999999864

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=6.2e-48  Score=359.79  Aligned_cols=261  Identities=30%  Similarity=0.534  Sum_probs=217.5

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      ...+.++|++.+.||+|+||.||+|++..+++.||||++....   ...+.+.+|+.+++++.|+++     +++++++.
T Consensus        17 ~~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~   91 (287)
T 2wei_A           17 QGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNI-----MKLFEILE   91 (287)
T ss_dssp             THHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTB-----CCEEEEEE
T ss_pred             HHHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCc-----cEEEEEEe
Confidence            3455678999999999999999999999999999999986432   345678899999999988777     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      +.+..++||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+||+++.++           
T Consensus        92 ~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~-----------  158 (287)
T 2wei_A           92 DSSSFYIVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKE-----------  158 (287)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSS-----------
T ss_pred             CCCeEEEEEEccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCC-----------
Confidence            999999999999 899999987664  699999999999999999999999999999999999996543           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                   ....+||+|||++.......  ....||+.|+|||++.+ .++.++||||||+++|+|++|..||.+
T Consensus       159 -------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~  224 (287)
T 2wei_A          159 -------------KDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYG  224 (287)
T ss_dssp             -------------TTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             -------------CcccEEEeccCcceeecCCCccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCC
Confidence                         23468999999887544322  33468999999999876 489999999999999999999999998


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+..+....+.......+                                              ......++.++.+||.
T Consensus       225 ~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~li~  258 (287)
T 2wei_A          225 KNEYDILKRVETGKYAFD----------------------------------------------LPQWRTISDDAKDLIR  258 (287)
T ss_dssp             SSHHHHHHHHHHCCCCCC----------------------------------------------SGGGTTSCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCC----------------------------------------------chhhhhcCHHHHHHHH
Confidence            877665554443211111                                              0112345778999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||+.||++|||+.|+++||||++.
T Consensus       259 ~~l~~dp~~Rps~~ell~hp~~~~~  283 (287)
T 2wei_A          259 KMLTFHPSLRITATQCLEHPWIQKY  283 (287)
T ss_dssp             HHTCSSGGGSCCHHHHHHSHHHHHH
T ss_pred             HHcccChhhCcCHHHHhcCHHHhcc
Confidence            9999999999999999999999864

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=5.6e-48  Score=362.63  Aligned_cols=264  Identities=25%  Similarity=0.416  Sum_probs=210.5

Q ss_pred             eeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecce
Q 013941           83 VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNW  161 (433)
Q Consensus        83 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~  161 (433)
                      .+..+....++|++++.||+|+||.||+|++..+++.||+|++.... ...+.+.+|+.+++.+.|+++     ++++++
T Consensus        10 ~~~~~~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~   84 (302)
T 2j7t_A           10 HVRRDLDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYI-----VKLLGA   84 (302)
T ss_dssp             CCBSSSCGGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTB-----CCEEEE
T ss_pred             ccccccCCccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCE-----eeeeee
Confidence            34445566789999999999999999999999999999999986533 345678889999999988777     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      +...+..++||||+ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++         
T Consensus        85 ~~~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~---------  154 (302)
T 2j7t_A           85 YYHDGKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEG---------  154 (302)
T ss_dssp             EECC-CEEEEEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTS---------
T ss_pred             eeeCCeEEEEEEeCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCC---------
Confidence            99999999999999 889999987643 3699999999999999999999999999999999999997655         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCcccc---CCCcccccCCcccchhhhh-----CCCCCccchHHHHHHHHHHHH
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH---QDHSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~---~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwSlG~il~el~  312 (433)
                                        .+||+|||++....   .......||..|+|||++.     +..++.++|||||||++|+|+
T Consensus       155 ------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~  216 (302)
T 2j7t_A          155 ------------------DIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA  216 (302)
T ss_dssp             ------------------CEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHH
T ss_pred             ------------------CEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHh
Confidence                              46777777653221   1123357899999999984     567899999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      +|..||...+.......+.....+.                                               ......++
T Consensus       217 ~g~~p~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~  249 (302)
T 2j7t_A          217 QIEPPHHELNPMRVLLKIAKSDPPT-----------------------------------------------LLTPSKWS  249 (302)
T ss_dssp             HSSCTTTTSCHHHHHHHHHHSCCCC-----------------------------------------------CSSGGGSC
T ss_pred             cCCCCCccCCHHHHHHHHhccCCcc-----------------------------------------------cCCccccC
Confidence            9999998877665544333211100                                               00112346


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ..+.+||.+||+.||++|||+.|+++||||++..
T Consensus       250 ~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  283 (302)
T 2j7t_A          250 VEFRDFLKIALDKNPETRPSAAQLLEHPFVSSIT  283 (302)
T ss_dssp             HHHHHHHHHHSCSCTTTSCCHHHHTTSTTTTTCC
T ss_pred             HHHHHHHHHHcccChhhCCCHHHHhcChHHhhhc
Confidence            6899999999999999999999999999999753

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=3.5e-48  Score=361.76  Aligned_cols=257  Identities=21%  Similarity=0.365  Sum_probs=190.6

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhh--HHH-HHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY--REA-AMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~-~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|++++.||+|+||+||+|++..+++.||+|+++.....  ... ...+...++.+.|++     ++++++++.+++.
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----iv~~~~~~~~~~~   80 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPF-----TVTFYGALFREGD   80 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTT-----BCCEEEEEECSSS
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCe-----EEEEeeeeeccCC
Confidence            46899999999999999999999999999999999754221  122 223333344455554     5999999999999


Q ss_pred             EEEEEccCCCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          168 ICIVFEKLGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       168 ~~lv~e~~~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      .++||||++++|.+++..  .....+++..++.++.||+.||+|||++ ||+||||||+|||++.++             
T Consensus        81 ~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~-------------  147 (290)
T 3fme_A           81 VWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALG-------------  147 (290)
T ss_dssp             EEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTC-------------
T ss_pred             EEEEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCC-------------
Confidence            999999997799888764  1234799999999999999999999998 999999999999996554             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhh----hCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVI----LGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~----~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                    .+||+|||++.......  ....||+.|+|||++    .+..++.++|||||||++|+|++|..||
T Consensus       148 --------------~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~  213 (290)
T 3fme_A          148 --------------QVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPY  213 (290)
T ss_dssp             --------------CEEBCCC---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSS
T ss_pred             --------------CEEEeecCCcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence                          56777777775443322  234799999999997    4557899999999999999999999999


Q ss_pred             CCCCh-HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          319 QTHEN-LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       319 ~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      ..... ...+..+....  .+                                              ......++.++.+
T Consensus       214 ~~~~~~~~~~~~~~~~~--~~----------------------------------------------~~~~~~~~~~~~~  245 (290)
T 3fme_A          214 DSWGTPFQQLKQVVEEP--SP----------------------------------------------QLPADKFSAEFVD  245 (290)
T ss_dssp             CCCSCHHHHHHHHHHSC--CC----------------------------------------------CCCTTTSCHHHHH
T ss_pred             cccCchHHHHHHHhccC--CC----------------------------------------------CcccccCCHHHHH
Confidence            86433 22222221110  00                                              0001245678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||.+||+.||++|||+.|+++||||+....
T Consensus       246 li~~~l~~~p~~Rpt~~e~l~hp~f~~~~~  275 (290)
T 3fme_A          246 FTSQCLKKNSKERPTYPELMQHPFFTLHES  275 (290)
T ss_dssp             HHHHHTCSSGGGSCCHHHHTTSHHHHHHHH
T ss_pred             HHHHHhhcChhhCcCHHHHHhCcccccCcc
Confidence            999999999999999999999999987543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.3e-48  Score=372.56  Aligned_cols=253  Identities=26%  Similarity=0.408  Sum_probs=201.8

Q ss_pred             CCeEEeccccccccEEEEEEEec---CCCcEEEEEEeccch-----hhHHHHHHHHHHHHHHH-hCCCCCcceeEeccee
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN---EKKELVAIKIVRSIN-----KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWF  162 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~  162 (433)
                      ++|++.+.||+|+||.||+|++.   .+++.||||+++...     ...+.+.+|+.+++.+. |++|     +++++++
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i-----v~~~~~~  128 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFL-----VTLHYAF  128 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTB-----CCEEEEE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCce-----eEEEEEE
Confidence            68999999999999999999984   588999999986432     23455677999999995 6666     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      ...+.+++||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++          
T Consensus       129 ~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~----------  196 (355)
T 1vzo_A          129 QTETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNG----------  196 (355)
T ss_dssp             EETTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS----------
T ss_pred             eeCceEEEEeecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCC----------
Confidence            9999999999999 899999998765  699999999999999999999999999999999999997655          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccC----CCcccccCCcccchhhhhCC--CCCccchHHHHHHHHHHHHhCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ----DHSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~----~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwSlG~il~el~~g~  315 (433)
                                       .+||+|||++.....    .....+||+.|+|||++.+.  .++.++|||||||++|+|++|.
T Consensus       197 -----------------~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~  259 (355)
T 1vzo_A          197 -----------------HVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGA  259 (355)
T ss_dssp             -----------------CEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------cEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCC
Confidence                             466777776653321    12235799999999999863  4789999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHH-HhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          316 ALFQTHENLEHLAMMER-VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      .||...........+.+ .....                                               ......++..
T Consensus       260 ~pf~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~  292 (355)
T 1vzo_A          260 SPFTVDGEKNSQAEISRRILKSE-----------------------------------------------PPYPQEMSAL  292 (355)
T ss_dssp             CTTSCTTSCCCHHHHHHHHHHCC-----------------------------------------------CCCCTTSCHH
T ss_pred             CCCccCCccchHHHHHHHHhccC-----------------------------------------------CCCCcccCHH
Confidence            99975432211111111 11000                                               0112345678


Q ss_pred             HHHHHHHhcccCCCCCC-----CHHHHhcCCCCCCC
Q 013941          395 LIDLLQGLLRYDPAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~-----ta~ell~hp~f~~~  425 (433)
                      +.+||.+||+.||++||     |++|+++||||++.
T Consensus       293 ~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~  328 (355)
T 1vzo_A          293 AKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKI  328 (355)
T ss_dssp             HHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTC
T ss_pred             HHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcC
Confidence            99999999999999999     99999999999863

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-47  Score=361.49  Aligned_cols=257  Identities=26%  Similarity=0.445  Sum_probs=206.0

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +...++|++.+.||+|+||.||+|.+..+|+.||||++.... ..+.+.+|+.+++.+.|+++     +++++++...+.
T Consensus        25 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~   98 (314)
T 3com_A           25 KQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES-DLQEIIKEISIMQQCDSPHV-----VKYYGSYFKNTD   98 (314)
T ss_dssp             -----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS-CCHHHHHHHHHHHTCCCTTB-----CCEEEEEEETTE
T ss_pred             hcchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH-HHHHHHHHHHHHHhCCCCCC-----ccEEEEEEeCCE
Confidence            344568999999999999999999999999999999987543 34668889999999988777     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+||||+ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+||+++.++               
T Consensus        99 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~---------------  162 (314)
T 3com_A           99 LWIVMEYCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEG---------------  162 (314)
T ss_dssp             EEEEEECCTTEEHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC---------------
T ss_pred             EEEEeecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCC---------------
Confidence            99999999 789999997433 4799999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                  .++|+|||.+......   .....||..|+|||++.+..++.++|||||||++|+|++|..||.....
T Consensus       163 ------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  230 (314)
T 3com_A          163 ------------HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHP  230 (314)
T ss_dssp             ------------CEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             ------------CEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCCh
Confidence                        4677777776543322   2335789999999999998999999999999999999999999987766


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+.......                                               ......++..+.+||.+||
T Consensus       231 ~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~l~~li~~~l  263 (314)
T 3com_A          231 MRAIFMIPTNPPPT-----------------------------------------------FRKPELWSDNFTDFVKQCL  263 (314)
T ss_dssp             HHHHHHHHHSCCCC-----------------------------------------------CSSGGGSCHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCcc-----------------------------------------------cCCcccCCHHHHHHHHHHc
Confidence            54443332211000                                               0011234678999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCC
Q 013941          404 RYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +.||++|||+.++++||||++.
T Consensus       264 ~~dp~~Rpt~~~ll~~~~~~~~  285 (314)
T 3com_A          264 VKSPEQRATATQLLQHPFVRSA  285 (314)
T ss_dssp             CSCTTTSCCHHHHTTSHHHHTC
T ss_pred             cCChhhCcCHHHHHhCHHHhcC
Confidence            9999999999999999999875

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.4e-47  Score=360.14  Aligned_cols=253  Identities=27%  Similarity=0.437  Sum_probs=212.0

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .++|++++.||+|+||.||+|++..+++.||||++...  ....+.+.+|+.+++.+.|+++     +++++++.+.+..
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~   95 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYV-----TKYYGSYLKDTKL   95 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTB-----CCEEEEEEETTEE
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCE-----eEEEEEEecCCeE
Confidence            35799999999999999999999999999999998643  2345778899999999988777     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||+ +++|.+++...   .+++..+..++.||+.||.|||++||+||||||+||+++.++                
T Consensus        96 ~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~----------------  156 (303)
T 3a7i_A           96 WIIMEYLGGGSALDLLEPG---PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHG----------------  156 (303)
T ss_dssp             EEEEECCTTEEHHHHHTTS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS----------------
T ss_pred             EEEEEeCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCC----------------
Confidence            9999999 88999998753   699999999999999999999999999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                 .++|+|||++......   .....||+.|+|||++.+..++.++|||||||++|+|++|..||......
T Consensus       157 -----------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~  225 (303)
T 3a7i_A          157 -----------EVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM  225 (303)
T ss_dssp             -----------CEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH
T ss_pred             -----------CEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH
Confidence                       4677777777543322   23357899999999999989999999999999999999999999877665


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+....  .+                                               .....++..+.+||.+||+
T Consensus       226 ~~~~~~~~~~--~~-----------------------------------------------~~~~~~~~~l~~li~~~l~  256 (303)
T 3a7i_A          226 KVLFLIPKNN--PP-----------------------------------------------TLEGNYSKPLKEFVEACLN  256 (303)
T ss_dssp             HHHHHHHHSC--CC-----------------------------------------------CCCSSCCHHHHHHHHHHCC
T ss_pred             HHHHHhhcCC--CC-----------------------------------------------CCccccCHHHHHHHHHHcC
Confidence            5443332210  00                                               0123456789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCCcc
Q 013941          405 YDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .||++|||+.|+++||||.+...
T Consensus       257 ~dp~~Rps~~~ll~~~~~~~~~~  279 (303)
T 3a7i_A          257 KEPSFRPTAKELLKHKFILRNAK  279 (303)
T ss_dssp             SSGGGSCCHHHHTTCHHHHHHCC
T ss_pred             CChhhCcCHHHHhhChhhhcCCC
Confidence            99999999999999999986544

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=9.7e-47  Score=353.43  Aligned_cols=258  Identities=20%  Similarity=0.256  Sum_probs=208.2

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccC
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ++.+.++|++.+.||+|+||.||+|++..+++.||||++.... ..+.+.+|+.+++.+ .|+++     +++++++...
T Consensus         5 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~~~~l~~~~~i-----~~~~~~~~~~   78 (298)
T 1csn_A            5 NNVVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLAGCTGI-----PNVYYFGQEG   78 (298)
T ss_dssp             -CEETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-TSCCHHHHHHHHHHTTTCTTC-----CCEEEEEEET
T ss_pred             CcccccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC-ccHHHHHHHHHHHHHhcCCCC-----CeEEeecCCC
Confidence            4556788999999999999999999999999999999986533 334577899999999 55555     8888999999


Q ss_pred             CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          166 NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       166 ~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ...++||||++++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++.             
T Consensus        79 ~~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~-------------  144 (298)
T 1csn_A           79 LHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNS-------------  144 (298)
T ss_dssp             TEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSS-------------
T ss_pred             ceeEEEEEecCCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCC-------------
Confidence            9999999999999999998754 36999999999999999999999999999999999999977652             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC----------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD----------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                               .....+||+|||++......          .....||+.|+|||++.+..++.++|||||||++|+|++|+
T Consensus       145 ---------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~  215 (298)
T 1csn_A          145 ---------KNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGS  215 (298)
T ss_dssp             ---------TTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ---------CCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCC
Confidence                     23345888888888654332          23357999999999999999999999999999999999999


Q ss_pred             CCCCCCCh---HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          316 ALFQTHEN---LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       316 ~pf~~~~~---~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      .||.+...   ......+.......+                                             .......++
T Consensus       216 ~pf~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~  250 (298)
T 1csn_A          216 LPWQGLKAATNKQKYERIGEKKQSTP---------------------------------------------LRELCAGFP  250 (298)
T ss_dssp             CTTSSCCSCCHHHHHHHHHHHHHHSC---------------------------------------------HHHHTTTSC
T ss_pred             CCcchhhccccHHHHHHHHhhccCcc---------------------------------------------HHHHHhhCc
Confidence            99987432   222332222111111                                             011123557


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .++.+||.+||+.||++|||+++|++
T Consensus       251 ~~l~~li~~~l~~dp~~RP~~~~l~~  276 (298)
T 1csn_A          251 EEFYKYMHYARNLAFDATPDYDYLQG  276 (298)
T ss_dssp             HHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCcccCCCHHHHHH
Confidence            79999999999999999999999874

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=6.6e-47  Score=360.02  Aligned_cols=254  Identities=22%  Similarity=0.283  Sum_probs=204.4

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeE
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +.++|++.+.||+|+||.||+|++..+++.||||++.... ..+.+.+|+.+++++ .|+++     +++++++..++..
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~~h~~i-----~~~~~~~~~~~~~   80 (330)
T 2izr_A            7 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS-RAPQLHLEYRFYKQLGSGDGI-----PQVYYFGPCGKYN   80 (330)
T ss_dssp             ETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC-SSCCHHHHHHHHHHHCSCTTS-----CCEEEEEEETTEE
T ss_pred             EcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc-chHHHHHHHHHHHHhhCCCCC-----CEEEEEEecCCcc
Confidence            3568999999999999999999999999999999986533 234578899999999 77777     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++||||++++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++.                
T Consensus        81 ~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~----------------  143 (330)
T 2izr_A           81 AMVLELLGPSLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGN----------------  143 (330)
T ss_dssp             EEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGG----------------
T ss_pred             EEEEEeCCCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCC----------------
Confidence            9999999999999998653 47999999999999999999999999999999999999987653                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC----------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD----------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                            .....+||+|||++......          .....||+.|+|||++.+..++.++|||||||++|||++|..||
T Consensus       144 ------~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf  217 (330)
T 2izr_A          144 ------KTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPW  217 (330)
T ss_dssp             ------TCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ------CCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCc
Confidence                  12233788888877643322          13468999999999999999999999999999999999999999


Q ss_pred             CCCChHH---HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          319 QTHENLE---HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       319 ~~~~~~~---~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .+....+   ....+.......|.                                             .......+ ++
T Consensus       218 ~~~~~~~~~~~~~~i~~~~~~~~~---------------------------------------------~~~~~~~p-~~  251 (330)
T 2izr_A          218 QGLKADTLKERYQKIGDTKRATPI---------------------------------------------EVLCENFP-EM  251 (330)
T ss_dssp             TTCCCSSHHHHHHHHHHHHHHSCH---------------------------------------------HHHTTTCH-HH
T ss_pred             cccccccHHHHHHHHHhhhccCCH---------------------------------------------HHHhccCh-HH
Confidence            8754332   22322221111110                                             01112334 89


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q 013941          396 IDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||.+||+.||.+||++++|++
T Consensus       252 ~~li~~~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          252 ATYLRYVRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             HHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCHHHHHH
Confidence            99999999999999999998875

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=8.1e-48  Score=364.67  Aligned_cols=259  Identities=25%  Similarity=0.409  Sum_probs=207.4

Q ss_pred             ceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-------hHHHHHHHHHHHHHHHhCCCCCc
Q 013941           81 HYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        81 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      ..+...++.+.++|++.+.||+|+||.||+|++..+++.||||++.....       ....+.+|+.+++++.|   .++
T Consensus        32 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~---~~~  108 (320)
T 3a99_A           32 LAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSS---GFS  108 (320)
T ss_dssp             --------CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCS---SSC
T ss_pred             cCcccccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhcc---CCC
Confidence            33455677788999999999999999999999999999999999875321       22446679999999976   234


Q ss_pred             ceeEecceeccCCeEEEEEccC-C-CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEe-eC
Q 013941          154 RCVQIRNWFDYRNHICIVFEKL-G-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV-SA  230 (433)
Q Consensus       154 ~~v~~~~~~~~~~~~~lv~e~~-~-~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~-~~  230 (433)
                      +++++++++...+..++|||++ + ++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++ .+
T Consensus       109 ~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~  186 (320)
T 3a99_A          109 GVIRLLDWFERPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNR  186 (320)
T ss_dssp             SBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTT
T ss_pred             CceEEEEEEecCCcEEEEEEcCCCCccHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCC
Confidence            5599999999999999999999 4 89999998764  799999999999999999999999999999999999997 33


Q ss_pred             CcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCC-CccchHHHHHHHH
Q 013941          231 EYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCIL  308 (433)
Q Consensus       231 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il  308 (433)
                      +                           .+||+|||++...... .....||+.|+|||++.+..+ +.++|||||||++
T Consensus       187 ~---------------------------~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il  239 (320)
T 3a99_A          187 G---------------------------ELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILL  239 (320)
T ss_dssp             T---------------------------EEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHH
T ss_pred             C---------------------------CEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHH
Confidence            3                           5778888877654432 233579999999999987765 6889999999999


Q ss_pred             HHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          309 VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       309 ~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      |+|++|..||.....      +...  .                                                ....
T Consensus       240 ~el~~g~~pf~~~~~------~~~~--~------------------------------------------------~~~~  263 (320)
T 3a99_A          240 YDMVCGDIPFEHDEE------IIRG--Q------------------------------------------------VFFR  263 (320)
T ss_dssp             HHHHHSSCSCCSHHH------HHHC--C------------------------------------------------CCCS
T ss_pred             HHHHHCCCCCCChhh------hhcc--c------------------------------------------------cccc
Confidence            999999999965321      0000  0                                                0012


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ..++.++.+||.+||+.||++|||++|+++||||++...
T Consensus       264 ~~~~~~~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~~  302 (320)
T 3a99_A          264 QRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLL  302 (320)
T ss_dssp             SCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCCC
T ss_pred             ccCCHHHHHHHHHHccCChhhCcCHHHHhcCHhhcCccC
Confidence            345778999999999999999999999999999998643

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-47  Score=370.14  Aligned_cols=258  Identities=19%  Similarity=0.270  Sum_probs=210.8

Q ss_pred             ccCCCeEEeccccccccEEEEEEE-----ecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecce
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECF-----DNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNW  161 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~-----~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~  161 (433)
                      ...++|++.+.||+|+||.||+|+     +..+++.||||+++..  ......+.+|+.++++++|+||     ++++++
T Consensus        68 ~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-----v~~~~~  142 (367)
T 3l9p_A           68 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNI-----VRCIGV  142 (367)
T ss_dssp             CCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEE
T ss_pred             cCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCC-----CeEEEE
Confidence            334689999999999999999999     4567889999998643  3444567889999999988877     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccc
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSY-----RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV  235 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l  235 (433)
                      +...+..++||||+ +++|.+++.....     ..+++..++.++.||+.||+|||++||+||||||+|||++.+|    
T Consensus       143 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~----  218 (367)
T 3l9p_A          143 SLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPG----  218 (367)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSS----
T ss_pred             EecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCC----
Confidence            99999999999999 8999999986432     3589999999999999999999999999999999999997654    


Q ss_pred             cCccccccCCCCCCcccCCCCCCCeeeecCCCCcccc-----CCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHH
Q 013941          236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH-----QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE  310 (433)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~e  310 (433)
                                          ....+||+|||++....     .......||+.|+|||++.+..++.++|||||||++||
T Consensus       219 --------------------~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~e  278 (367)
T 3l9p_A          219 --------------------PGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWE  278 (367)
T ss_dssp             --------------------TTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             --------------------CCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHH
Confidence                                23358888888876432     12233578999999999999999999999999999999


Q ss_pred             HHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccC
Q 013941          311 LCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD  389 (433)
Q Consensus       311 l~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (433)
                      |++ |..||.+....+....+......                                                 ....
T Consensus       279 llt~g~~pf~~~~~~~~~~~i~~~~~~-------------------------------------------------~~~~  309 (367)
T 3l9p_A          279 IFSLGYMPYPSKSNQEVLEFVTSGGRM-------------------------------------------------DPPK  309 (367)
T ss_dssp             HHTTSCCSSTTCCHHHHHHHHHTTCCC-------------------------------------------------CCCT
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHcCCCC-------------------------------------------------CCCc
Confidence            998 99999988776655544332110                                                 0113


Q ss_pred             CchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          390 HSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       390 ~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      .++..+.+||.+||+.||++|||+.||++|.++..
T Consensus       310 ~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~  344 (367)
T 3l9p_A          310 NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  344 (367)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence            44678999999999999999999999999877653

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=1.6e-47  Score=359.34  Aligned_cols=271  Identities=24%  Similarity=0.353  Sum_probs=196.1

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc------
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY------  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~------  164 (433)
                      .++|++++.||+|+||.||+|++..+++.||||++.......+.+.+|+.++++++|+++     +++++++.+      
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~~~   79 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYV-----VRYYAAWLERRNFVK   79 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEEEECCCCCC
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHH-----HHHHHHHHhhcchhh
Confidence            457999999999999999999999999999999998766666788899999999988877     888877643      


Q ss_pred             -------CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccccc
Q 013941          165 -------RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       165 -------~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~  236 (433)
                             .+..|+||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+
T Consensus        80 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~  158 (303)
T 1zy4_A           80 PMTAVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIG  158 (303)
T ss_dssp             ------CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEEC
T ss_pred             hhcccccCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEe
Confidence                   56799999999 889999998653 468899999999999999999999999999999999999877655555


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCC
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~  315 (433)
                      |||++..........         .+ +-..............||..|+|||++.+. .++.++|||||||++|+|++  
T Consensus       159 dfg~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~--  226 (303)
T 1zy4_A          159 DFGLAKNVHRSLDIL---------KL-DSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY--  226 (303)
T ss_dssp             CCCCCSCTTC-----------------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS--
T ss_pred             eCcchhhcccccchh---------cc-ccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh--
Confidence            555443222111000         00 000000000112335789999999999865 68999999999999999998  


Q ss_pred             CCCCCCCh-HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          316 ALFQTHEN-LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       316 ~pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                       ||..... ......+......+|.                                              ......+..
T Consensus       227 -p~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~~~  259 (303)
T 1zy4_A          227 -PFSTGMERVNILKKLRSVSIEFPP----------------------------------------------DFDDNKMKV  259 (303)
T ss_dssp             -CCSSHHHHHHHHHHHHSTTCCCCT----------------------------------------------TCCTTTSHH
T ss_pred             -ccCCchhHHHHHHhccccccccCc----------------------------------------------cccccchHH
Confidence             5543221 1222222111111110                                              112344567


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          395 LIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      +.+||.+||+.||++|||+.|+++||||+...
T Consensus       260 ~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (303)
T 1zy4_A          260 EKKIIRLLIDHDPNKRPGARTLLNSGWLPVKH  291 (303)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHSSCSCCCC
T ss_pred             HHHHHHHHHhcCcccCcCHHHHhCCCCcCCCC
Confidence            89999999999999999999999999998653

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=9e-47  Score=355.57  Aligned_cols=252  Identities=21%  Similarity=0.296  Sum_probs=199.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|++.+.||+|+||+||+|++  +++.||||++....   ...+.+.+|+.++++++|+||     +++++++.+.+.
T Consensus        36 ~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~~~~  108 (309)
T 3p86_A           36 WCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNI-----VLFMGAVTQPPN  108 (309)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEECSTTC
T ss_pred             hhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEEECCc
Confidence            46899999999999999999986  57889999987533   334567889999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSY-RSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      +++||||+ +++|.+++..... ..+++..++.++.||+.||+|||++|  |+||||||+|||++.++            
T Consensus       109 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~------------  176 (309)
T 3p86_A          109 LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKY------------  176 (309)
T ss_dssp             CEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTC------------
T ss_pred             eEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCC------------
Confidence            99999999 8999999986431 13899999999999999999999999  99999999999996554            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                     .+||+|||++......   .....||+.|+|||++.+..++.++|||||||++|+|++|..||.+
T Consensus       177 ---------------~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~  241 (309)
T 3p86_A          177 ---------------TVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGN  241 (309)
T ss_dssp             ---------------CEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTT
T ss_pred             ---------------cEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                           5677777777543332   2335799999999999999999999999999999999999999988


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+..+....+......                                                ......+++++.+||.
T Consensus       242 ~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~l~~li~  273 (309)
T 3p86_A          242 LNPAQVVAAVGFKCKR------------------------------------------------LEIPRNLNPQVAAIIE  273 (309)
T ss_dssp             SCHHHHHHHHHHSCCC------------------------------------------------CCCCTTSCHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCC------------------------------------------------CCCCccCCHHHHHHHH
Confidence            7766554443221110                                                0112345778999999


Q ss_pred             HhcccCCCCCCCHHHHhc--CCCCCC
Q 013941          401 GLLRYDPAERLKAREALR--HPFFTR  424 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~--hp~f~~  424 (433)
                      +||+.||++|||++|+++  ++++++
T Consensus       274 ~~l~~dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          274 GCWTNEPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             HHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred             HHccCChhhCcCHHHHHHHHHHHHHh
Confidence            999999999999999987  555554

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=4.3e-47  Score=352.45  Aligned_cols=254  Identities=22%  Similarity=0.371  Sum_probs=208.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEeccee--ccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF--DYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~--~~~~  166 (433)
                      ++|++.+.||+|+||.||+|++..+++.||+|++...   ....+.+.+|+.++++++|+|+     +++++++  ...+
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~   80 (279)
T 2w5a_A            6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI-----VRYYDRIIDRTNT   80 (279)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEEEGGGT
T ss_pred             hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCC-----CeEEEEEecCCCc
Confidence            5799999999999999999999999999999999743   2345678889999999988877     9999977  4467


Q ss_pred             eEEEEEccC-CCCHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHHHHHhCC-----cEecCCCCCcEEEeeCCcccccCc
Q 013941          167 HICIVFEKL-GPSLYDFLRKNS--YRSFPIDLVRELGRQLLESVAFMHELR-----LIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~-----ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                      .+++||||+ +++|.+++....  ...+++..++.++.||+.||+|||++|     |+||||||+|||++.++       
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~-------  153 (279)
T 2w5a_A           81 TLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQ-------  153 (279)
T ss_dssp             EEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSS-------
T ss_pred             eEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCC-------
Confidence            899999999 889999997532  235999999999999999999999999     99999999999997655       


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                          .+||+|||++.......   ....||..|+|||++.+..++.++|||||||++|+|++|.
T Consensus       154 --------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  213 (279)
T 2w5a_A          154 --------------------NVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALM  213 (279)
T ss_dssp             --------------------CEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSS
T ss_pred             --------------------CEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCC
Confidence                                46777777765543322   2347899999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||...+..+....+.....  +                                               .....++.++
T Consensus       214 ~p~~~~~~~~~~~~i~~~~~--~-----------------------------------------------~~~~~~~~~l  244 (279)
T 2w5a_A          214 PPFTAFSQKELAGKIREGKF--R-----------------------------------------------RIPYRYSDEL  244 (279)
T ss_dssp             CSSCCSSHHHHHHHHHHTCC--C-----------------------------------------------CCCTTSCHHH
T ss_pred             CCCcccCHHHHHHHHhhccc--c-----------------------------------------------cCCcccCHHH
Confidence            99988776555444433110  0                                               0112456789


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      .+||.+||+.||++|||++|+++|+|+.+..
T Consensus       245 ~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~  275 (279)
T 2w5a_A          245 NEIITRMLNLKDYHRPSVEEILENPLILEHH  275 (279)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHTSTTCCGGG
T ss_pred             HHHHHHHcCCCcccCCCHHHHHhChhhhhhc
Confidence            9999999999999999999999999999864

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4.4e-47  Score=350.59  Aligned_cols=245  Identities=25%  Similarity=0.376  Sum_probs=205.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.+.||+|+||.||+|++. +++.||+|++.......+.+.+|+.++++++|+++     +++++++.+.+..++|
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~~lv   83 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKL-----VQLYGVCLEQAPICLV   83 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTB-----CCEEEEECSSSSEEEE
T ss_pred             hhceeeheecCCCccEEEEEEec-CCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCE-----eeEEEEEecCCceEEE
Confidence            57999999999999999999986 56779999998766666788999999999988777     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+||+++.++                   
T Consensus        84 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~-------------------  143 (269)
T 4hcu_A           84 FEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQ-------------------  143 (269)
T ss_dssp             EECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGG-------------------
T ss_pred             EEeCCCCcHHHHHHhcC-cccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCC-------------------
Confidence            9999 899999997654 4699999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                              .++|+|||++......    .....+|..|+|||++.+..++.++|||||||++|+|++ |..||......+
T Consensus       144 --------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~  215 (269)
T 4hcu_A          144 --------VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE  215 (269)
T ss_dssp             --------CEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH
T ss_pred             --------CEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH
Confidence                    4677777777543321    222466788999999998899999999999999999999 999998877766


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.......                                                 .....+..+.+||.+||+.
T Consensus       216 ~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~li~~~l~~  246 (269)
T 4hcu_A          216 VVEDISTGFRLY-------------------------------------------------KPRLASTHVYQIMNHCWRE  246 (269)
T ss_dssp             HHHHHHTTCCCC-------------------------------------------------CCTTSCHHHHHHHHHHTCS
T ss_pred             HHHHHhcCccCC-------------------------------------------------CCCcCCHHHHHHHHHHccC
Confidence            555443321110                                                 1123467899999999999


Q ss_pred             CCCCCCCHHHHhcC
Q 013941          406 DPAERLKAREALRH  419 (433)
Q Consensus       406 dP~~R~ta~ell~h  419 (433)
                      ||++|||+.|+++|
T Consensus       247 ~p~~Rps~~~ll~~  260 (269)
T 4hcu_A          247 RPEDRPAFSRLLRQ  260 (269)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             CcccCcCHHHHHHH
Confidence            99999999999875

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=8e-47  Score=364.74  Aligned_cols=248  Identities=18%  Similarity=0.306  Sum_probs=201.3

Q ss_pred             CCCeEEeccccccccEEEEEEEec-------CCCcEEEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDN-------EKKELVAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRN  160 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~-------~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~  160 (433)
                      .++|++.+.||+|+||.||+|++.       .++..||||+++..  ....+.+.+|+.+++++ +|+||     +++++
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnI-----v~~~~  154 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI-----INLLG  154 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTB-----CCEEE
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCE-----eeEEE
Confidence            368999999999999999999864       34568999999753  23456788999999999 78777     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcE
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENI  225 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NI  225 (433)
                      ++.+.+.+|+||||+ +++|.+++....              ...+++..+..++.||+.||+|||++||+||||||+||
T Consensus       155 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NI  234 (370)
T 2psq_A          155 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNV  234 (370)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGE
T ss_pred             EEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhE
Confidence            999999999999999 899999998653              13588999999999999999999999999999999999


Q ss_pred             EEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccch
Q 013941          226 LLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCD  300 (433)
Q Consensus       226 li~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~D  300 (433)
                      |++.++                           .+||+|||++......     .....+|+.|+|||++.+..++.++|
T Consensus       235 ll~~~~---------------------------~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  287 (370)
T 2psq_A          235 LVTENN---------------------------VMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSD  287 (370)
T ss_dssp             EECTTC---------------------------CEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHH
T ss_pred             EECCCC---------------------------CEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHH
Confidence            997655                           4666677766543221     12246788999999999999999999


Q ss_pred             HHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcC
Q 013941          301 LWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR  379 (433)
Q Consensus       301 iwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (433)
                      ||||||++|||++ |..||.+....+....+.....                                            
T Consensus       288 vwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~--------------------------------------------  323 (370)
T 2psq_A          288 VWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHR--------------------------------------------  323 (370)
T ss_dssp             HHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCC--------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCC--------------------------------------------
Confidence            9999999999999 9999987665544433321100                                            


Q ss_pred             chhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                           ......++.++.+||.+||+.||++|||+.|++++
T Consensus       324 -----~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~  358 (370)
T 2psq_A          324 -----MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  358 (370)
T ss_dssp             -----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                 01123456789999999999999999999999864

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.4e-47  Score=359.74  Aligned_cols=247  Identities=22%  Similarity=0.280  Sum_probs=202.1

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCc---EEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKE---LVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~---~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..++|++.+.||+|+||.||+|++..+++   .||||+++..  ....+.+.+|+.++++++|+||     +++++++.+
T Consensus        47 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~  121 (325)
T 3kul_A           47 EASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNI-----IRLEGVVTR  121 (325)
T ss_dssp             CGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEECG
T ss_pred             ChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCC-----CcEEEEEEe
Confidence            34689999999999999999999986554   5999999753  3445678899999999988777     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ++..|+||||+ +++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++            
T Consensus       122 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~------------  188 (325)
T 3kul_A          122 GRLAMIVTEYMENGSLDTFLRTHD-GQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNL------------  188 (325)
T ss_dssp             GGCCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC------------
T ss_pred             CCccEEEeeCCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCC------------
Confidence            99999999999 899999997553 4699999999999999999999999999999999999997655            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEA  316 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~  316 (433)
                                     .+||+|||++.......      ....+|+.|+|||++.+..++.++|||||||++|+|++ |..
T Consensus       189 ---------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~  253 (325)
T 3kul_A          189 ---------------VCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGER  253 (325)
T ss_dssp             ---------------CEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ---------------CEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCC
Confidence                           46677777665443221      11345778999999998899999999999999999999 999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+....+....+......                                                 .....++..+.
T Consensus       254 p~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~l~  284 (325)
T 3kul_A          254 PYWNMTNRDVISSVEEGYRL-------------------------------------------------PAPMGCPHALH  284 (325)
T ss_dssp             TTTTSCHHHHHHHHHTTCCC-------------------------------------------------CCCTTCCHHHH
T ss_pred             CcccCCHHHHHHHHHcCCCC-------------------------------------------------CCCCCcCHHHH
Confidence            99887776655544332110                                                 01234567899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q 013941          397 DLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +||.+||..||++|||+.|+++
T Consensus       285 ~li~~~l~~dp~~Rps~~eil~  306 (325)
T 3kul_A          285 QLMLDCWHKDRAQRPRFSQIVS  306 (325)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHccCChhhCcCHHHHHH
Confidence            9999999999999999999875

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=1e-47  Score=368.25  Aligned_cols=275  Identities=21%  Similarity=0.350  Sum_probs=212.9

Q ss_pred             cCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhh------------------HHHHHHHHHHHHHHHh
Q 013941           86 IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKY------------------REAAMIEIDVLQRLAR  147 (433)
Q Consensus        86 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------------------~~~~~~E~~~l~~l~~  147 (433)
                      .++...++|++.+.||+|+||.||+|++  +++.||||++......                  .+.+.+|+.++++++|
T Consensus        25 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h  102 (348)
T 2pml_X           25 EKDKYINDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKN  102 (348)
T ss_dssp             SSCEEETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCC
T ss_pred             hcccccCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCC
Confidence            3445567899999999999999999998  8999999998743221                  1778899999999988


Q ss_pred             CCCCCcceeEecceeccCCeEEEEEccC-CCCHHHH------HHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecC
Q 013941          148 HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDF------LRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTD  219 (433)
Q Consensus       148 ~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~------l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrD  219 (433)
                      +++     +++++++.+.+..++||||+ +++|.++      +.......+++..++.++.||+.||.|||+ +||+|||
T Consensus       103 ~~i-----~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~d  177 (348)
T 2pml_X          103 EYC-----LTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRD  177 (348)
T ss_dssp             TTB-----CCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCC
T ss_pred             CCc-----ceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecC
Confidence            777     99999999999999999999 8899998      655434579999999999999999999999 9999999


Q ss_pred             CCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCC-CCCc
Q 013941          220 LKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGL-GWNY  297 (433)
Q Consensus       220 ikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~-~~~~  297 (433)
                      |||+|||++.++                           .++|+|||.+...... .....||..|+|||++.+. .++.
T Consensus       178 l~p~Nil~~~~~---------------------------~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  230 (348)
T 2pml_X          178 VKPSNILMDKNG---------------------------RVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNG  230 (348)
T ss_dssp             CCGGGEEECTTS---------------------------CEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEH
T ss_pred             CChHhEEEcCCC---------------------------cEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCc
Confidence            999999996654                           5777778777654322 2335789999999999887 5666


Q ss_pred             -cchHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHH
Q 013941          298 -PCDLWSVGCILVELCSGEALFQTHEN-LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW  375 (433)
Q Consensus       298 -~~DiwSlG~il~el~~g~~pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (433)
                       ++|||||||++|+|++|..||..... .+....+.......|...                 ..+....          
T Consensus       231 ~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~-----------------~~~~~~~----------  283 (348)
T 2pml_X          231 AKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDR-----------------NHFLYPL----------  283 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSS-----------------SSSTTTT----------
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCccch-----------------hhhhccc----------
Confidence             99999999999999999999987766 444444332221221100                 0000000          


Q ss_pred             HhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          376 KLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                          ...........++.++.+||.+||+.||++|||++|+++||||++.
T Consensus       284 ----~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~  329 (348)
T 2pml_X          284 ----TNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADT  329 (348)
T ss_dssp             ----CC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             ----cccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCC
Confidence                0000011124567899999999999999999999999999999975

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=1.1e-46  Score=347.59  Aligned_cols=246  Identities=20%  Similarity=0.303  Sum_probs=204.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .++|++.+.||+|+||.||+|.+. ++..||+|++.......+.+.+|+.++.+++|+++     +++++++.+.+..++
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~~l   80 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKL-----VKFYGVCSKEYPIYI   80 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTB-----CCEEEEECSSSSEEE
T ss_pred             hhheeeeeeeccCCCceEEEEEec-CceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCE-----eeEEEEEccCCceEE
Confidence            367999999999999999999865 56779999998766666778999999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++                  
T Consensus        81 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~------------------  141 (268)
T 3sxs_A           81 VTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDL------------------  141 (268)
T ss_dssp             EEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTC------------------
T ss_pred             EEEccCCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCC------------------
Confidence            99999 899999998653 3599999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                               .++|+|||++.......    ....+|..|+|||++.+..++.++||||||+++|+|++ |..||......
T Consensus       142 ---------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~  212 (268)
T 3sxs_A          142 ---------CVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS  212 (268)
T ss_dssp             ---------CEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH
T ss_pred             ---------CEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChH
Confidence                     46777777665433222    12356778999999998889999999999999999999 99999887766


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .....+.......                                                 .....++.+.+||.+||+
T Consensus       213 ~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~l~~li~~~l~  243 (268)
T 3sxs_A          213 EVVLKVSQGHRLY-------------------------------------------------RPHLASDTIYQIMYSCWH  243 (268)
T ss_dssp             HHHHHHHTTCCCC-------------------------------------------------CCTTSCHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCC-------------------------------------------------CCCcChHHHHHHHHHHcC
Confidence            6554443221110                                                 112346689999999999


Q ss_pred             cCCCCCCCHHHHhcC
Q 013941          405 YDPAERLKAREALRH  419 (433)
Q Consensus       405 ~dP~~R~ta~ell~h  419 (433)
                      .||++|||+.|+++|
T Consensus       244 ~~p~~Rps~~~ll~~  258 (268)
T 3sxs_A          244 ELPEKRPTFQQLLSS  258 (268)
T ss_dssp             SSGGGSCCHHHHHHH
T ss_pred             CChhhCcCHHHHHHH
Confidence            999999999999975

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=3.2e-46  Score=352.57  Aligned_cols=263  Identities=29%  Similarity=0.440  Sum_probs=202.9

Q ss_pred             eecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           84 FAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        84 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      +.......++|++.+.||+|+||.||+|.+. +++.||||++...   ....+.+.+|+.++.++.|+   +++++++++
T Consensus        20 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~---~~~iv~~~~   95 (313)
T 3cek_A           20 FQSMSVKGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQH---SDKIIRLYD   95 (313)
T ss_dssp             CCEEEETTEEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGG---CTTBCCEEE
T ss_pred             eeeeeeccceEEEEEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhcccc---CCceEEEEE
Confidence            3334445568999999999999999999975 5888999998643   33456778999999999862   134599999


Q ss_pred             eeccCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          161 WFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      ++...+..++|||+.+++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||+++ +         
T Consensus        96 ~~~~~~~~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~-~---------  163 (313)
T 3cek_A           96 YEITDQYIYMVMECGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVD-G---------  163 (313)
T ss_dssp             EEECSSEEEEEECCCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEET-T---------
T ss_pred             EeecCCEEEEEEecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEEC-C---------
Confidence            999999999999977999999998765  7999999999999999999999999999999999999953 3         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhC-----------CCCCccchHHHH
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILG-----------LGWNYPCDLWSV  304 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~-----------~~~~~~~DiwSl  304 (433)
                                        .+||+|||++.......     ....||+.|+|||++.+           ..++.++|||||
T Consensus       164 ------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~sl  225 (313)
T 3cek_A          164 ------------------MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSL  225 (313)
T ss_dssp             ------------------EEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHH
T ss_pred             ------------------eEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHH
Confidence                              46777777776543221     23478999999999976           468899999999


Q ss_pred             HHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhh
Q 013941          305 GCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI  384 (433)
Q Consensus       305 G~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (433)
                      ||++|+|++|..||........  .+......                   ....                         
T Consensus       226 G~il~el~~g~~pf~~~~~~~~--~~~~~~~~-------------------~~~~-------------------------  259 (313)
T 3cek_A          226 GCILYYMTYGKTPFQQIINQIS--KLHAIIDP-------------------NHEI-------------------------  259 (313)
T ss_dssp             HHHHHHHHHSSCTTTTCCSHHH--HHHHHHCT-------------------TSCC-------------------------
T ss_pred             HHHHHHHHhCCCchhhHHHHHH--HHHHHHhc-------------------cccc-------------------------
Confidence            9999999999999976543221  11111100                   0000                         


Q ss_pred             hhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       385 ~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                       ......+.++.+||.+||+.||++|||+.|+++||||+....
T Consensus       260 -~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~~~~~~~  301 (313)
T 3cek_A          260 -EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH  301 (313)
T ss_dssp             -CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHCC--
T ss_pred             -CCcccchHHHHHHHHHHccCCcccCcCHHHHhcCccccCCCC
Confidence             111233668999999999999999999999999999997543

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=6.8e-47  Score=352.97  Aligned_cols=252  Identities=24%  Similarity=0.331  Sum_probs=206.4

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCC-------cEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKK-------ELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~-------~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      .++|++.+.||+|+||.||+|++..++       ..||+|++.... ...+.+.+|+.++++++|+||     +++++++
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~   81 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHL-----VLNYGVC   81 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTB-----CCEEEEE
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCE-----eEEEEEE
Confidence            468999999999999999999988877       479999986543 445678899999999988877     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      .+.+..++||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++..++.+++  
T Consensus        82 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~--  158 (289)
T 4fvq_A           82 VCGDENILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPP--  158 (289)
T ss_dssp             CCTTCCEEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCC--
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccc--
Confidence            9999999999999 899999998754 349999999999999999999999999999999999999998876665554  


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCC-CCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGE-ALFQ  319 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~-~pf~  319 (433)
                                       .+||+|||++...... ....||..|+|||++.+ ..++.++|||||||++|+|++|. +||.
T Consensus       159 -----------------~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~  220 (289)
T 4fvq_A          159 -----------------FIKLSDPGISITVLPK-DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLS  220 (289)
T ss_dssp             -----------------EEEECCCCSCTTTSCH-HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             -----------------eeeeccCcccccccCc-cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcc
Confidence                             4899999998654332 33578999999999988 67999999999999999999954 5554


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ........ .+.......                                                  ....+.++.+||
T Consensus       221 ~~~~~~~~-~~~~~~~~~--------------------------------------------------~~~~~~~l~~li  249 (289)
T 4fvq_A          221 ALDSQRKL-QFYEDRHQL--------------------------------------------------PAPKAAELANLI  249 (289)
T ss_dssp             TSCHHHHH-HHHHTTCCC--------------------------------------------------CCCSSCTTHHHH
T ss_pred             ccchHHHH-HHhhccCCC--------------------------------------------------CCCCCHHHHHHH
Confidence            44433222 221111111                                                  122355789999


Q ss_pred             HHhcccCCCCCCCHHHHhcC
Q 013941          400 QGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~h  419 (433)
                      .+||+.||++|||+.|+++|
T Consensus       250 ~~~l~~dp~~Rps~~~ll~~  269 (289)
T 4fvq_A          250 NNCMDYEPDHRPSFRAIIRD  269 (289)
T ss_dssp             HHHSCSSGGGSCCHHHHHHH
T ss_pred             HHHcCCChhHCcCHHHHHHH
Confidence            99999999999999999975

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.3e-47  Score=359.17  Aligned_cols=251  Identities=24%  Similarity=0.456  Sum_probs=194.3

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh-------hHHHHHHHHHHHHHH----HhCCCCCcce
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK-------YREAAMIEIDVLQRL----ARHDIGGTRC  155 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~E~~~l~~l----~~~~i~~~~~  155 (433)
                      ++.+.++|++.+.||+|+||.||+|++..+++.||||++.....       ....+.+|+.++.++    .|+|+     
T Consensus        26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i-----  100 (312)
T 2iwi_A           26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGV-----  100 (312)
T ss_dssp             -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSB-----
T ss_pred             hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCe-----
Confidence            45567789999999999999999999999999999999965432       122345699999999    56655     


Q ss_pred             eEecceeccCCeEEEEEcc-C-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEe-eCCc
Q 013941          156 VQIRNWFDYRNHICIVFEK-L-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV-SAEY  232 (433)
Q Consensus       156 v~~~~~~~~~~~~~lv~e~-~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~-~~~~  232 (433)
                      +++++++...+..++|||+ + +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+||+++ .++ 
T Consensus       101 ~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~-  177 (312)
T 2iwi_A          101 IRLLDWFETQEGFMLVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRG-  177 (312)
T ss_dssp             CCEEEEC-----CEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTT-
T ss_pred             eeEEEEEecCCeEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCC-
Confidence            9999999999999999999 5 889999998765  699999999999999999999999999999999999997 444 


Q ss_pred             ccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCC-ccchHHHHHHHHHH
Q 013941          233 VKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVE  310 (433)
Q Consensus       233 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~-~~~DiwSlG~il~e  310 (433)
                                                .+||+|||++...... .....||..|+|||++.+..+. .++|||||||++|+
T Consensus       178 --------------------------~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~  231 (312)
T 2iwi_A          178 --------------------------CAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYD  231 (312)
T ss_dssp             --------------------------EEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHH
T ss_pred             --------------------------eEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHH
Confidence                                      4677777777654332 2345789999999999877664 58999999999999


Q ss_pred             HHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC
Q 013941          311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH  390 (433)
Q Consensus       311 l~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (433)
                      |++|+.||.....      +....                                                  ......
T Consensus       232 l~~g~~pf~~~~~------~~~~~--------------------------------------------------~~~~~~  255 (312)
T 2iwi_A          232 MVCGDIPFERDQE------ILEAE--------------------------------------------------LHFPAH  255 (312)
T ss_dssp             HHHSSCSCCSHHH------HHHTC--------------------------------------------------CCCCTT
T ss_pred             HHHCCCCCCChHH------Hhhhc--------------------------------------------------cCCccc
Confidence            9999999964211      11100                                                  001134


Q ss_pred             chHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          391 SAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       391 ~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ++..+.+||.+||+.||++|||++|+++||||++...
T Consensus       256 ~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~~~  292 (312)
T 2iwi_A          256 VSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPAE  292 (312)
T ss_dssp             SCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC---
T ss_pred             CCHHHHHHHHHHccCChhhCcCHHHHhcChhhcCchh
Confidence            5678999999999999999999999999999998643

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=1.3e-46  Score=350.10  Aligned_cols=245  Identities=20%  Similarity=0.325  Sum_probs=202.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++++.||+|+||.||+|.+. ++..||+|++.......+.+.+|+.++.+++|+++     +++++++.+.+..++|
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~~lv   97 (283)
T 3gen_A           24 KDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKL-----VQLYGVCTKQRPIFII   97 (283)
T ss_dssp             GGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTB-----CCEEEEECSSSSEEEE
T ss_pred             HHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCE-----eeEEEEEecCCCeEEE
Confidence            57999999999999999999875 67789999998766566778999999999988777     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++                   
T Consensus        98 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~-------------------  157 (283)
T 3gen_A           98 TEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQG-------------------  157 (283)
T ss_dssp             ECCCTTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTS-------------------
T ss_pred             EeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCC-------------------
Confidence            9999 999999997633 3699999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                              .++|+|||++......    .....+|+.|+|||++.+..++.++|||||||++|+|++ |..||...+..+
T Consensus       158 --------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~  229 (283)
T 3gen_A          158 --------VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE  229 (283)
T ss_dssp             --------CEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH
T ss_pred             --------CEEEccccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhH
Confidence                    5677777777543321    122356788999999998899999999999999999998 999998877766


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.......                                                 .....+..+.+||.+||+.
T Consensus       230 ~~~~~~~~~~~~-------------------------------------------------~~~~~~~~l~~li~~~l~~  260 (283)
T 3gen_A          230 TAEHIAQGLRLY-------------------------------------------------RPHLASEKVYTIMYSCWHE  260 (283)
T ss_dssp             HHHHHHTTCCCC-------------------------------------------------CCTTCCHHHHHHHHHTTCS
T ss_pred             HHHHHhcccCCC-------------------------------------------------CCCcCCHHHHHHHHHHccC
Confidence            555544321111                                                 1123466899999999999


Q ss_pred             CCCCCCCHHHHhcC
Q 013941          406 DPAERLKAREALRH  419 (433)
Q Consensus       406 dP~~R~ta~ell~h  419 (433)
                      ||++|||++|+++|
T Consensus       261 ~p~~Rps~~~ll~~  274 (283)
T 3gen_A          261 KADERPTFKILLSN  274 (283)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             ChhHCcCHHHHHHH
Confidence            99999999999975

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.4e-46  Score=350.70  Aligned_cols=248  Identities=19%  Similarity=0.317  Sum_probs=209.3

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ..++|++.+.||+|+||.||+|.+..+++.||+|++.......+.+.+|+.++++++|+++     +++++++.+.+..+
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~~   85 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNL-----VQLLGVCTREPPFY   85 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTB-----CCEEEEECSSSSEE
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEccCCCEE
Confidence            3467999999999999999999999999999999998776677888999999999998877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++.......+++..++.++.||+.||+|||++||+||||||+||+++.++                 
T Consensus        86 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~-----------------  148 (288)
T 3kfa_A           86 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH-----------------  148 (288)
T ss_dssp             EEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGG-----------------
T ss_pred             EEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCC-----------------
Confidence            999999 89999999886656799999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCCh
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHEN  323 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~  323 (433)
                                .++|+|||++.......    ....+|+.|+|||++.+..++.++|||||||++|+|++ |..||.+.+.
T Consensus       149 ----------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~  218 (288)
T 3kfa_A          149 ----------LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL  218 (288)
T ss_dssp             ----------CEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred             ----------CEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence                      46677777665443322    22356889999999998899999999999999999999 9999987665


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+.....                                                 ......++..+.+||.+||
T Consensus       219 ~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~l~~li~~~l  249 (288)
T 3kfa_A          219 SQVYELLEKDYR-------------------------------------------------MERPEGCPEKVYELMRACW  249 (288)
T ss_dssp             GGHHHHHHTTCC-------------------------------------------------CCCCTTCCHHHHHHHHHHT
T ss_pred             HHHHHHHhccCC-------------------------------------------------CCCCCCCCHHHHHHHHHHh
Confidence            544433322110                                                 0112345678999999999


Q ss_pred             ccCCCCCCCHHHHhc
Q 013941          404 RYDPAERLKAREALR  418 (433)
Q Consensus       404 ~~dP~~R~ta~ell~  418 (433)
                      +.||++|||++|+++
T Consensus       250 ~~dp~~Rps~~~~~~  264 (288)
T 3kfa_A          250 QWNPSDRPSFAEIHQ  264 (288)
T ss_dssp             CSSGGGSCCHHHHHH
T ss_pred             CCChhhCcCHHHHHH
Confidence            999999999999975

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-46  Score=354.87  Aligned_cols=264  Identities=17%  Similarity=0.238  Sum_probs=198.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEecc-chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRS-INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ++|++.+.||+|+||+||+|.+..+++.||+|++.. .....+.+.+|+.++++++|+||     +++++++.+++..++
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~~~~~~l   84 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNV-----LKFIGVLYKDKRLNF   84 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEEEETTEEEE
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCc-----ccEEEEEecCCeeEE
Confidence            579999999999999999999999999999998864 34456778899999999988777     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++........
T Consensus        85 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  163 (310)
T 3s95_A           85 ITEYIKGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT  163 (310)
T ss_dssp             EEECCTTCBHHHHHHHCC-TTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC----
T ss_pred             EEEecCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccc
Confidence            99999 899999998743 4699999999999999999999999999999999999998766554444444332221110


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM  329 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~  329 (433)
                      .....          ...............||+.|+|||++.+..++.++|||||||++|+|++|..||.........  
T Consensus       164 ~~~~~----------~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~--  231 (310)
T 3s95_A          164 QPEGL----------RSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMD--  231 (310)
T ss_dssp             --------------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTT--
T ss_pred             ccccc----------ccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHH--
Confidence            00000          000000000111357999999999999999999999999999999999999998653211000  


Q ss_pred             HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCC
Q 013941          330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAE  409 (433)
Q Consensus       330 i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~  409 (433)
                                                           ........        ........+++.+.+||.+||+.||++
T Consensus       232 -------------------------------------~~~~~~~~--------~~~~~~~~~~~~l~~li~~~l~~dP~~  266 (310)
T 3s95_A          232 -------------------------------------FGLNVRGF--------LDRYCPPNCPPSFFPITVRCCDLDPEK  266 (310)
T ss_dssp             -------------------------------------SSBCHHHH--------HHHTCCTTCCTTHHHHHHHHTCSSGGG
T ss_pred             -------------------------------------Hhhhhhcc--------ccccCCCCCCHHHHHHHHHHccCChhh
Confidence                                                 00000000        001112455678999999999999999


Q ss_pred             CCCHHHHhc
Q 013941          410 RLKAREALR  418 (433)
Q Consensus       410 R~ta~ell~  418 (433)
                      |||+.++++
T Consensus       267 Rps~~~l~~  275 (310)
T 3s95_A          267 RPSFVKLEH  275 (310)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999985

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=1.1e-46  Score=357.32  Aligned_cols=255  Identities=16%  Similarity=0.234  Sum_probs=188.6

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCc---EEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKE---LVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~---~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      ..++|++.+.||+|+||.||+|++..++.   .||||+++..   ....+.+.+|+.++++++|+|+     +++++++.
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~   95 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHV-----AKLVGVSL   95 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTB-----CCCCEEEE
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCce-----ehhhceee
Confidence            35689999999999999999999887765   7999998753   3445678899999999988877     99999987


Q ss_pred             cCCeE------EEEEccC-CCCHHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCc
Q 013941          164 YRNHI------CIVFEKL-GPSLYDFLRKNSY----RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEY  232 (433)
Q Consensus       164 ~~~~~------~lv~e~~-~~~L~~~l~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~  232 (433)
                      ..+..      ++||||+ +++|.+++.....    ..+++..++.++.||+.||+|||++||+||||||+|||++.++ 
T Consensus        96 ~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~-  174 (323)
T 3qup_A           96 RSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDM-  174 (323)
T ss_dssp             CC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTS-
T ss_pred             ccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCC-
Confidence            76554      9999999 8899999964321    2589999999999999999999999999999999999997655 


Q ss_pred             ccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHH
Q 013941          233 VKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCI  307 (433)
Q Consensus       233 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~i  307 (433)
                                                .+||+|||++.......     ....+|+.|+|||++.+..++.++|||||||+
T Consensus       175 --------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  228 (323)
T 3qup_A          175 --------------------------TVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVT  228 (323)
T ss_dssp             --------------------------CEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             --------------------------CEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHH
Confidence                                      56777777765433221     22356788999999999999999999999999


Q ss_pred             HHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhh
Q 013941          308 LVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ  386 (433)
Q Consensus       308 l~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (433)
                      +|+|++ |..||.+.+..+....+.....                                                 ..
T Consensus       229 l~ell~~g~~p~~~~~~~~~~~~~~~~~~-------------------------------------------------~~  259 (323)
T 3qup_A          229 MWEIMTRGQTPYAGIENAEIYNYLIGGNR-------------------------------------------------LK  259 (323)
T ss_dssp             HHHHHTTSCCTTTTCCGGGHHHHHHTTCC-------------------------------------------------CC
T ss_pred             HHHHHhCCCCCccccChHHHHHHHhcCCC-------------------------------------------------CC
Confidence            999999 9999988766554443322110                                                 01


Q ss_pred             ccCCchHHHHHHHHHhcccCCCCCCC-------HHHHhcCCCCCCC
Q 013941          387 HVDHSAGDLIDLLQGLLRYDPAERLK-------AREALRHPFFTRD  425 (433)
Q Consensus       387 ~~~~~~~~l~~li~~~L~~dP~~R~t-------a~ell~hp~f~~~  425 (433)
                      ....++.++.+||.+||+.||++|||       ++++++|||+...
T Consensus       260 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~  305 (323)
T 3qup_A          260 QPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLST  305 (323)
T ss_dssp             CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC------
T ss_pred             CCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCC
Confidence            12345678999999999999999999       7889999999875

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=3.1e-46  Score=349.48  Aligned_cols=255  Identities=23%  Similarity=0.350  Sum_probs=201.1

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      |.....||+|+||.||+|++..+++.||||++.... ...+.+.+|+.+++.+.|+|+     +++++++...+..++||
T Consensus        24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~~~lv~   98 (295)
T 2clq_A           24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNI-----VQYLGSFSENGFIKIFM   98 (295)
T ss_dssp             TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTB-----CCEEEEEEETTEEEEEE
T ss_pred             CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCE-----eeEeeEEEeCCcEEEEE
Confidence            334458999999999999999999999999987543 345678889999999988777     99999999999999999


Q ss_pred             ccC-CCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee-CCcccccCccccccCCCCCC
Q 013941          173 EKL-GPSLYDFLRKNS-YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS-AEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~-~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||+ +++|.+++.... ...+++..++.++.||+.||.|||++||+||||||+||+++. ++                  
T Consensus        99 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~------------------  160 (295)
T 2clq_A           99 EQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSG------------------  160 (295)
T ss_dssp             ECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTC------------------
T ss_pred             EeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCC------------------
Confidence            999 899999998653 235679999999999999999999999999999999999975 33                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCC--CCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLG--WNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~--~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                               .++|+|||++......   .....||+.|+|||++.+..  ++.++|||||||++|+|++|..||......
T Consensus       161 ---------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  231 (295)
T 2clq_A          161 ---------VLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEP  231 (295)
T ss_dssp             ---------CEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSH
T ss_pred             ---------CEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCch
Confidence                     5778888877654322   23357899999999997653  889999999999999999999999754433


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      .............                                               ......++.++.+||.+||+
T Consensus       232 ~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~~~~li~~~l~  264 (295)
T 2clq_A          232 QAAMFKVGMFKVH-----------------------------------------------PEIPESMSAEAKAFILKCFE  264 (295)
T ss_dssp             HHHHHHHHHHCCC-----------------------------------------------CCCCTTSCHHHHHHHHHTTC
T ss_pred             hHHHHhhcccccc-----------------------------------------------ccccccCCHHHHHHHHHHcc
Confidence            2211111110000                                               01123457789999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCCcc
Q 013941          405 YDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .||++|||++|+++||||+....
T Consensus       265 ~dp~~Rps~~~ll~~~~~~~~~~  287 (295)
T 2clq_A          265 PDPDKRACANDLLVDEFLKVSSK  287 (295)
T ss_dssp             SSTTTSCCHHHHHTSGGGCC---
T ss_pred             CChhhCCCHHHHhcChhhhhccc
Confidence            99999999999999999997643

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=3.3e-47  Score=357.40  Aligned_cols=272  Identities=24%  Similarity=0.370  Sum_probs=186.1

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .++|++.+.||+|+||.||+|++..+++.||||++....  ...+.+.+|+.+++++.|+||     +++++++...+..
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~   88 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNI-----VSYYTSFVVKDEL   88 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTB-----CCEEEEEESSSCE
T ss_pred             hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCE-----eeEEEEEeecCCc
Confidence            467999999999999999999999999999999986432  334567788888888877766     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhc------CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          169 CIVFEKL-GPSLYDFLRKN------SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~------~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      ++||||+ +++|.+++...      ....+++..++.++.||+.||.|||++||+||||||+||+++.++.++|+|||++
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~  168 (303)
T 2vwi_A           89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVS  168 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred             EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence            9999999 99999998741      2246999999999999999999999999999999999999987765555555543


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                      .........                   ..........||+.|+|||++.+ ..++.++|||||||++|+|++|..||..
T Consensus       169 ~~~~~~~~~-------------------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  229 (303)
T 2vwi_A          169 AFLATGGDI-------------------TRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHK  229 (303)
T ss_dssp             HHCC----------------------------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             heeccCCCc-------------------cchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence            322111100                   00011123478999999999876 4689999999999999999999999987


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ............  ...+.                     ...                 ..........++.++.+||.
T Consensus       230 ~~~~~~~~~~~~--~~~~~---------------------~~~-----------------~~~~~~~~~~~~~~~~~li~  269 (303)
T 2vwi_A          230 YPPMKVLMLTLQ--NDPPS---------------------LET-----------------GVQDKEMLKKYGKSFRKMIS  269 (303)
T ss_dssp             SCGGGHHHHHHT--SSCCC---------------------TTC----------------------CCCCCCCHHHHHHHH
T ss_pred             CchhhHHHHHhc--cCCCc---------------------ccc-----------------ccccchhhhhhhHHHHHHHH
Confidence            665443322111  00000                     000                 00001122456778999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      +||+.||++|||+.|+++||||++..
T Consensus       270 ~~l~~dp~~Rps~~~ll~h~~~~~~~  295 (303)
T 2vwi_A          270 LCLQKDPEKRPTAAELLRHKFFQKAK  295 (303)
T ss_dssp             HHCCSSGGGSCCHHHHHTSTTC----
T ss_pred             HHccCChhhCcCHHHHhhChhhhcCC
Confidence            99999999999999999999999753

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=5.8e-46  Score=346.36  Aligned_cols=252  Identities=20%  Similarity=0.236  Sum_probs=203.8

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh--------hHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--------YREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      ...++|++.+.||+|+||.||+|++..+++.||+|++.....        ..+.+.+|+.++++++|+|+     +++++
T Consensus        16 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~   90 (287)
T 4f0f_A           16 LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNI-----VKLYG   90 (287)
T ss_dssp             CCSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTB-----CCEEE
T ss_pred             hhhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCc-----hhhhe
Confidence            334689999999999999999999999999999999864321        11567889999999988777     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccC
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      ++.+..  ++||||+ +++|.+++.... ..+++..++.++.||+.||+|||++|  |+||||||+|||++.++.     
T Consensus        91 ~~~~~~--~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~-----  162 (287)
T 4f0f_A           91 LMHNPP--RMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDE-----  162 (287)
T ss_dssp             EETTTT--EEEEECCTTCBHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCT-----
T ss_pred             eecCCC--eEEEEecCCCCHHHHHhccc-CCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCC-----
Confidence            987766  6999999 899999887654 47999999999999999999999999  999999999999976541     


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhh--CCCCCccchHHHHHHHHHHHHhCC
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVIL--GLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                       +....+||+|||++...........||+.|+|||++.  ...++.++|||||||++|+|++|.
T Consensus       163 -----------------~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~  225 (287)
T 4f0f_A          163 -----------------NAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGE  225 (287)
T ss_dssp             -----------------TCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------CCceeEEeCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCC
Confidence                             2334589999999987666556678999999999984  445789999999999999999999


Q ss_pred             CCCCCCChHHH--HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          316 ALFQTHENLEH--LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       316 ~pf~~~~~~~~--~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      .||........  ...+.. .+..                                               ......+++
T Consensus       226 ~pf~~~~~~~~~~~~~~~~-~~~~-----------------------------------------------~~~~~~~~~  257 (287)
T 4f0f_A          226 GPFDEYSYGKIKFINMIRE-EGLR-----------------------------------------------PTIPEDCPP  257 (287)
T ss_dssp             CTTTTCCCCHHHHHHHHHH-SCCC-----------------------------------------------CCCCTTSCH
T ss_pred             CCCccccccHHHHHHHHhc-cCCC-----------------------------------------------CCCCcccCH
Confidence            99976554322  111111 0000                                               011234577


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+.+||.+||+.||++|||++|+++
T Consensus       258 ~l~~li~~~l~~dp~~Rps~~~ll~  282 (287)
T 4f0f_A          258 RLRNVIELCWSGDPKKRPHFSYIVK  282 (287)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHH
Confidence            8999999999999999999999985

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=2.8e-46  Score=359.83  Aligned_cols=249  Identities=21%  Similarity=0.316  Sum_probs=197.9

Q ss_pred             CCCeEEeccccccccEEEEEEE-----ecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEeccee
Q 013941           91 TPRYRILSKMGEGTFGQVVECF-----DNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~-----~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~  162 (433)
                      .++|++.+.||+|+||.||+|+     +..+++.||||+++...  ...+.+.+|+.++.++ .|+||     +++++++
T Consensus        21 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpni-----v~~~~~~   95 (359)
T 3vhe_A           21 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNV-----VNLLGAC   95 (359)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEE
T ss_pred             ccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcce-----eeeeeee
Confidence            4689999999999999999998     56677999999997532  3345688999999999 55666     9999998


Q ss_pred             ccC-CeEEEEEccC-CCCHHHHHHhcCC----------------------------------------------------
Q 013941          163 DYR-NHICIVFEKL-GPSLYDFLRKNSY----------------------------------------------------  188 (433)
Q Consensus       163 ~~~-~~~~lv~e~~-~~~L~~~l~~~~~----------------------------------------------------  188 (433)
                      ... +.+++||||+ +++|.+++.....                                                    
T Consensus        96 ~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (359)
T 3vhe_A           96 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSD  175 (359)
T ss_dssp             CSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------------
T ss_pred             ecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccch
Confidence            775 4599999999 8999999986532                                                    


Q ss_pred             ------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCC
Q 013941          189 ------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK  256 (433)
Q Consensus       189 ------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~  256 (433)
                                  ..+++..++.++.||+.||+|||++||+||||||+|||++.++.                        
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~------------------------  231 (359)
T 3vhe_A          176 VEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV------------------------  231 (359)
T ss_dssp             --------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGC------------------------
T ss_pred             hhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCc------------------------
Confidence                        12899999999999999999999999999999999999977664                        


Q ss_pred             CCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHH
Q 013941          257 SSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMM  330 (433)
Q Consensus       257 ~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i  330 (433)
                         +||+|||++......     .....||+.|+|||++.+..++.++|||||||++|+|++ |..||.+..........
T Consensus       232 ---~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~  308 (359)
T 3vhe_A          232 ---VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRR  308 (359)
T ss_dssp             ---EEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHH
T ss_pred             ---EEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHH
Confidence               555555555432211     123478899999999999999999999999999999998 99999876644333222


Q ss_pred             HHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCC
Q 013941          331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAER  410 (433)
Q Consensus       331 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R  410 (433)
                      .......                                                .....+++++.++|.+||+.||++|
T Consensus       309 ~~~~~~~------------------------------------------------~~~~~~~~~l~~li~~~l~~dP~~R  340 (359)
T 3vhe_A          309 LKEGTRM------------------------------------------------RAPDYTTPEMYQTMLDCWHGEPSQR  340 (359)
T ss_dssp             HHHTCCC------------------------------------------------CCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             HHcCCCC------------------------------------------------CCCCCCCHHHHHHHHHHccCChhhC
Confidence            2211000                                                1123356789999999999999999


Q ss_pred             CCHHHHhcC
Q 013941          411 LKAREALRH  419 (433)
Q Consensus       411 ~ta~ell~h  419 (433)
                      ||+.|+++|
T Consensus       341 ps~~ell~~  349 (359)
T 3vhe_A          341 PTFSELVEH  349 (359)
T ss_dssp             CCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            999999976

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=2.2e-45  Score=343.83  Aligned_cols=255  Identities=24%  Similarity=0.284  Sum_probs=199.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+.++|++.+.||+|+||.||+|++..+++.||||++..... .+.+.+|+.+++.+.|+++    +..+..++..++..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~e~~~l~~l~~~~~----i~~~~~~~~~~~~~   80 (296)
T 3uzp_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVG----IPTIRWCGAEGDYN   80 (296)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS-CCHHHHHHHHHHHHTTSTT----CCCEEEEEEETTEE
T ss_pred             eeccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc-hhHHHHHHHHHHHhhcCCC----CCccccccCCCCce
Confidence            456789999999999999999999999999999999865432 3457889999999998875    23334445667889


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++||||++++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.+                  
T Consensus        81 ~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~------------------  141 (296)
T 3uzp_A           81 VMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG------------------  141 (296)
T ss_dssp             EEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCG------------------
T ss_pred             EEEEEecCCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecC------------------
Confidence            9999999999999998543 469999999999999999999999999999999999999521                  


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC----------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD----------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                            +....+||+|||++......          .....||+.|+|||++.+..++.++|||||||++|+|++|+.||
T Consensus       142 ------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf  215 (296)
T 3uzp_A          142 ------KKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPW  215 (296)
T ss_dssp             ------GGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ------CCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCC
Confidence                  12335777777777543322          23457999999999999999999999999999999999999999


Q ss_pred             CCCChH---HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          319 QTHENL---EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       319 ~~~~~~---~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .+....   .....+.......|                                             .......++.++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~l  250 (296)
T 3uzp_A          216 QGLKAATKRQKYERISEKKMSTP---------------------------------------------IEVLCKGYPSEF  250 (296)
T ss_dssp             SSCCCSSSSSHHHHHHHHHHHSC---------------------------------------------HHHHTTTSCHHH
T ss_pred             CCcCchhhhhhhhhhcccccCCc---------------------------------------------hHHHHhhCCHHH
Confidence            764321   12222211110000                                             011124457799


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q 013941          396 IDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||.+||+.||++|||++++++
T Consensus       251 ~~li~~~l~~dp~~Rps~~~l~~  273 (296)
T 3uzp_A          251 ATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             HHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             HHHHHHHHhcCcCcCCCHHHHHH
Confidence            99999999999999999999875

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.4e-45  Score=355.52  Aligned_cols=259  Identities=15%  Similarity=0.219  Sum_probs=193.9

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCC-----CcEEEEEEeccchhhHHHHHHHHHHHHHHHh----------CCCCCc
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEK-----KELVAIKIVRSINKYREAAMIEIDVLQRLAR----------HDIGGT  153 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~-----~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~----------~~i~~~  153 (433)
                      ...++|++.+.||+|+||.||+|.+..+     ++.||||++....   ....+|+.+++++.+          ..+.|+
T Consensus        32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~  108 (364)
T 3op5_A           32 MAAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDN---GPLFTELKFYQRAAKPEQIQKWIRTRKLKYL  108 (364)
T ss_dssp             TTCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTC---HHHHHHHHHHHHHCCHHHHHHHHHHTTCSCC
T ss_pred             cCCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccc---hhHHHHHHHHHhhhhhHHHHHHHHHhhccCC
Confidence            4456899999999999999999998765     5789999986543   234455555555533          345566


Q ss_pred             ceeEecceeccC----CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          154 RCVQIRNWFDYR----NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       154 ~~v~~~~~~~~~----~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                      |++++++++...    ...||||||++++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.
T Consensus       109 ~iv~~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~  187 (364)
T 3op5_A          109 GVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANA-KRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNY  187 (364)
T ss_dssp             CSCCEEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEES
T ss_pred             CCCeEEeeeeeccCCcceEEEEEeCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEec
Confidence            779999988764    5689999999999999998753 47999999999999999999999999999999999999972


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC----------CcccccCCcccchhhhhCCCCCccc
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD----------HSYVVSTRHYRAPEVILGLGWNYPC  299 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~  299 (433)
                      +                         .+..+||+|||++......          .....||+.|+|||++.+..++.++
T Consensus       188 ~-------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  242 (364)
T 3op5_A          188 K-------------------------NPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRG  242 (364)
T ss_dssp             S-------------------------CTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHH
T ss_pred             C-------------------------CCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchh
Confidence            1                         1235677777776543211          1234699999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhc
Q 013941          300 DLWSVGCILVELCSGEALFQTHENLEH-LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLL  378 (433)
Q Consensus       300 DiwSlG~il~el~~g~~pf~~~~~~~~-~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (433)
                      |||||||++|||++|+.||.+...... ...........                                         
T Consensus       243 Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~-----------------------------------------  281 (364)
T 3op5_A          243 DLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYREN-----------------------------------------  281 (364)
T ss_dssp             HHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHC-----------------------------------------
T ss_pred             hHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhh-----------------------------------------
Confidence            999999999999999999985332222 11111110000                                         


Q ss_pred             Cchhhhhh--ccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          379 RLPNLIMQ--HVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       379 ~~~~~~~~--~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                       .......  ....++.++.+||..||+.||++||++++|++
T Consensus       282 -~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~  322 (364)
T 3op5_A          282 -IASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRD  322 (364)
T ss_dssp             -HHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             -HHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence             0000000  01345779999999999999999999999874

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=358.31  Aligned_cols=248  Identities=19%  Similarity=0.308  Sum_probs=203.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecC-------CCcEEEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNE-------KKELVAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRN  160 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~  160 (433)
                      .++|++.+.||+|+||.||+|++..       .+..||||+++..  ......+.+|+.+++++ +|+||     +++++
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnI-----v~~~~  142 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNI-----INLLG  142 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTB-----CCEEE
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchh-----hhhee
Confidence            4689999999999999999999754       3357999999753  23446788999999999 78777     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcE
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENI  225 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NI  225 (433)
                      ++...+..++||||+ +++|.+++....              ...+++..++.++.||+.||+|||++||+||||||+||
T Consensus       143 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NI  222 (382)
T 3tt0_A          143 ACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNV  222 (382)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGE
T ss_pred             eeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceE
Confidence            999999999999999 889999998754              13599999999999999999999999999999999999


Q ss_pred             EEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccch
Q 013941          226 LLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCD  300 (433)
Q Consensus       226 li~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~D  300 (433)
                      |++.++                           .+||+|||++......     .....||+.|+|||++.+..++.++|
T Consensus       223 ll~~~~---------------------------~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~D  275 (382)
T 3tt0_A          223 LVTEDN---------------------------VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSD  275 (382)
T ss_dssp             EECTTC---------------------------CEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHH
T ss_pred             EEcCCC---------------------------cEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhH
Confidence            997655                           4677777766543321     12246788999999999999999999


Q ss_pred             HHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcC
Q 013941          301 LWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR  379 (433)
Q Consensus       301 iwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (433)
                      ||||||++|+|++ |..||.+....+....+.....                                            
T Consensus       276 iwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~--------------------------------------------  311 (382)
T 3tt0_A          276 VWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHR--------------------------------------------  311 (382)
T ss_dssp             HHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCC--------------------------------------------
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC--------------------------------------------
Confidence            9999999999999 9999988776655444332110                                            


Q ss_pred             chhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                           ......++.++.+||.+||+.||++|||++|++++
T Consensus       312 -----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  346 (382)
T 3tt0_A          312 -----MDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  346 (382)
T ss_dssp             -----CCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                 01123457789999999999999999999999875

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=7.4e-46  Score=365.44  Aligned_cols=272  Identities=24%  Similarity=0.281  Sum_probs=200.5

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccC
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+.+.+.|.+.+.||+|+||+||.+. ..+|+.||||++....  .+...+|+.++.++ .|+||     +++++++.+.
T Consensus        10 ~~~l~~~~~~~~~LG~G~~g~V~~~~-~~~g~~vAvK~~~~~~--~~~~~~E~~~l~~l~~HpnI-----v~~~~~~~~~   81 (434)
T 2rio_A           10 EQSLKNLVVSEKILGYGSSGTVVFQG-SFQGRPVAVKRMLIDF--CDIALMEIKLLTESDDHPNV-----IRYYCSETTD   81 (434)
T ss_dssp             SCSCSSCEEEEEEEEECSTTCEEEEE-ESSSSEEEEEEEEGGG--HHHHHHHHHHHHHHTTSTTB-----CCEEEEEECS
T ss_pred             hhhhhheeeccCeEeeCCCeEEEEEE-EECCeEEEEEEEcHHH--HHHHHHHHHHHHhccCCCCc-----CeEEEEEecC
Confidence            44566778889999999999998754 5679999999986532  35678899999887 67776     9999999999


Q ss_pred             CeEEEEEccCCCCHHHHHHhcCCCC-----CCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          166 NHICIVFEKLGPSLYDFLRKNSYRS-----FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       166 ~~~~lv~e~~~~~L~~~l~~~~~~~-----l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      +.+|+|||||+++|.+++.......     .++..++.++.||+.||+|||++||+||||||+|||++.++.......  
T Consensus        82 ~~~~lv~E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~--  159 (434)
T 2rio_A           82 RFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQ--  159 (434)
T ss_dssp             SEEEEEECCCSEEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCT--
T ss_pred             CeEEEEEecCCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccc--
Confidence            9999999999889999998654211     123345789999999999999999999999999999987653211100  


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-------cccccCCcccchhhhhC-------CCCCccchHHHHHH
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-------SYVVSTRHYRAPEVILG-------LGWNYPCDLWSVGC  306 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~gt~~y~aPE~~~~-------~~~~~~~DiwSlG~  306 (433)
                                  ..+....+||+|||++.......       ....||+.|+|||++.+       ..++.++|||||||
T Consensus       160 ------------~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~  227 (434)
T 2rio_A          160 ------------TGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGC  227 (434)
T ss_dssp             ------------TCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHH
T ss_pred             ------------cCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHH
Confidence                        01345578999999987654322       23579999999999976       56899999999999


Q ss_pred             HHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          307 ILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       307 il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      ++|||++ |..||.......  ..+.......+                        ..                   ..
T Consensus       228 il~ellt~g~~Pf~~~~~~~--~~i~~~~~~~~------------------------~~-------------------~~  262 (434)
T 2rio_A          228 VFYYILSKGKHPFGDKYSRE--SNIIRGIFSLD------------------------EM-------------------KC  262 (434)
T ss_dssp             HHHHHHTTSCCTTCSTTTHH--HHHHHTCCCCC------------------------CC-------------------TT
T ss_pred             HHHHHHhCCCCCCCCchhhH--HHHhcCCCCcc------------------------cc-------------------cc
Confidence            9999999 999997654332  11111111100                        00                   00


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .....++.++.+||.+||+.||++|||+.|+++||||...
T Consensus       263 ~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp~f~~~  302 (434)
T 2rio_A          263 LHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWPK  302 (434)
T ss_dssp             CCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSCH
T ss_pred             cccccchHHHHHHHHHHhhCChhhCCCHHHHHhCCccCCc
Confidence            0011235689999999999999999999999999999754

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=1.8e-45  Score=344.38  Aligned_cols=255  Identities=23%  Similarity=0.275  Sum_probs=194.7

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+.++|++.+.||+|+||.||+|++..+++.||||++.... ....+.+|+.+++.+.|+++    +..+..++...+..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~l~~l~~~~~----i~~~~~~~~~~~~~   80 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-KHPQLHIESKIYKMMQGGVG----IPTIRWCGAEGDYN   80 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC----CCCHHHHHHHHHHHTTSTT----CCCEEEEEEETTEE
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc-cchHHHHHHHHHHHhcCCCC----CCeeeeecCCCCce
Confidence            45578999999999999999999999999999999875433 22457889999999998865    23444455678899


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++||||++++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.+                  
T Consensus        81 ~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~------------------  141 (296)
T 4hgt_A           81 VMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLG------------------  141 (296)
T ss_dssp             EEEEECCCCBHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCG------------------
T ss_pred             EEEEEccCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeecc------------------
Confidence            9999999999999998543 369999999999999999999999999999999999999321                  


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC----------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD----------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                            +....+||+|||++......          .....||+.|+|||++.+..++.++|||||||++|+|++|+.||
T Consensus       142 ------~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf  215 (296)
T 4hgt_A          142 ------KKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPW  215 (296)
T ss_dssp             ------GGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ------CCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCC
Confidence                  12335677777776543322          12357999999999999999999999999999999999999999


Q ss_pred             CCCChHH---HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          319 QTHENLE---HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       319 ~~~~~~~---~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .+.....   ....+.......|                                             .......++.++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~l  250 (296)
T 4hgt_A          216 QGLKAATKRQKYERISEKKMSTP---------------------------------------------IEVLCKGYPSEF  250 (296)
T ss_dssp             SSCCCSSSSSHHHHHHHHHHHSC---------------------------------------------HHHHTTTSCHHH
T ss_pred             cccchhhhhhhhhhhhcccccch---------------------------------------------hhhhhccCCHHH
Confidence            7643321   1111111100000                                             011123457799


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q 013941          396 IDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||.+||+.||++|||++++++
T Consensus       251 ~~li~~~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          251 ATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             HHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCHHHHHH
Confidence            99999999999999999999875

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=2e-46  Score=368.68  Aligned_cols=255  Identities=23%  Similarity=0.288  Sum_probs=194.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .+|++.+.||+|+||+||. ....+++.||||++.....  ....+|+.+++.+ .|+||     +++++++.+.+..|+
T Consensus        24 ~~y~~~~~LG~G~~G~V~~-~~~~~~~~vAvK~~~~~~~--~~~~~E~~~l~~l~~HpnI-----v~l~~~~~~~~~~~l   95 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVY-RGMFDNRDVAVKRILPECF--SFADREVQLLRESDEHPNV-----IRYFCTEKDRQFQYI   95 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEE-EEESSSSEEEEEEECTTTE--EECHHHHHHHHHSCCCTTB-----CCEEEEEEETTEEEE
T ss_pred             EEEecCCeeecCcCEEEEE-EEEeCCeEEEEEEECHHHH--HHHHHHHHHHHhccCCCCc-----CeEEEEEecCCEEEE
Confidence            3699999999999999764 3456789999999865322  2356799999998 57776     999999999999999


Q ss_pred             EEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          171 VFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       171 v~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||||+++|.+++.... ..+.+..+..++.||+.||+|||++||+||||||+|||++.++                   
T Consensus        96 v~E~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~-------------------  155 (432)
T 3p23_A           96 AIELCAATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPN-------------------  155 (432)
T ss_dssp             EEECCSEEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCB-------------------
T ss_pred             EEECCCCCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCC-------------------
Confidence            99999889999998654 2455566789999999999999999999999999999996533                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhC---CCCCccchHHHHHHHHHHHHh-CCCCCCC
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILG---LGWNYPCDLWSVGCILVELCS-GEALFQT  320 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~---~~~~~~~DiwSlG~il~el~~-g~~pf~~  320 (433)
                         .+....+||+|||++......      .....||+.|+|||++.+   ..++.++|||||||++|||++ |..||..
T Consensus       156 ---~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~  232 (432)
T 3p23_A          156 ---AHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGK  232 (432)
T ss_dssp             ---TTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBS
T ss_pred             ---CCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcch
Confidence               123446789999988754422      233579999999999984   467889999999999999999 9999965


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .........    .+...                    ....                       ......+..+.+||.
T Consensus       233 ~~~~~~~~~----~~~~~--------------------~~~~-----------------------~~~~~~~~~~~~li~  265 (432)
T 3p23_A          233 SLQRQANIL----LGACS--------------------LDCL-----------------------HPEKHEDVIARELIE  265 (432)
T ss_dssp             TTTHHHHHH----TTCCC--------------------CTTS-----------------------CTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHH----hccCC--------------------cccc-----------------------CccccccHHHHHHHH
Confidence            443322111    11000                    0000                       000122456889999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      +||+.||++|||++||++||||.+
T Consensus       266 ~~L~~dP~~Rps~~evl~hp~f~~  289 (432)
T 3p23_A          266 KMIAMDPQKRPSAKHVLKHPFFWS  289 (432)
T ss_dssp             HHSCSSGGGSCCHHHHHTSTTTCC
T ss_pred             HHHhCCHhhCCCHHHHHhCccccC
Confidence            999999999999999999999986

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1e-45  Score=353.99  Aligned_cols=258  Identities=17%  Similarity=0.235  Sum_probs=193.8

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecC---CCcEEEEEEeccchh------------hHHHHHHHHHHHHHHHhCCCCC
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNE---KKELVAIKIVRSINK------------YREAAMIEIDVLQRLARHDIGG  152 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~~~------------~~~~~~~E~~~l~~l~~~~i~~  152 (433)
                      +...++|++.+.||+|+||.||+|++..   ++..||+|++.....            ....+.+|+.++..+.|+||  
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni--  110 (345)
T 2v62_A           33 DMEGNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGI--  110 (345)
T ss_dssp             CTTSCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCC--
T ss_pred             cccCceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCc--
Confidence            3445789999999999999999999987   788999999875431            11234456666777777766  


Q ss_pred             cceeEecceecc----CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEe
Q 013941          153 TRCVQIRNWFDY----RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV  228 (433)
Q Consensus       153 ~~~v~~~~~~~~----~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~  228 (433)
                         +++++++..    ....|+||||++++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++
T Consensus       111 ---~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~  185 (345)
T 2v62_A          111 ---PLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLG  185 (345)
T ss_dssp             ---CCEEEEEEEESSSCEEEEEEEECEEEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEE
T ss_pred             ---ceeecccccccCCCcEEEEEEeccCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEc
Confidence               999998877    78999999999999999998765  799999999999999999999999999999999999997


Q ss_pred             eCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC----------CcccccCCcccchhhhhCCCCCcc
Q 013941          229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD----------HSYVVSTRHYRAPEVILGLGWNYP  298 (433)
Q Consensus       229 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~  298 (433)
                      .++                         ...+||+|||++......          .....||..|+|||++.+..++.+
T Consensus       186 ~~~-------------------------~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  240 (345)
T 2v62_A          186 YKN-------------------------PDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRR  240 (345)
T ss_dssp             SSS-------------------------TTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHH
T ss_pred             cCC-------------------------CCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCch
Confidence            654                         125677777777543211          133579999999999999999999


Q ss_pred             chHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHH
Q 013941          299 CDLWSVGCILVELCSGEALFQTH--ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK  376 (433)
Q Consensus       299 ~DiwSlG~il~el~~g~~pf~~~--~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (433)
                      +|||||||++|||++|..||.+.  +..............+|.....                                 
T Consensus       241 ~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------  287 (345)
T 2v62_A          241 SDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLK---------------------------------  287 (345)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHH---------------------------------
T ss_pred             hhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHh---------------------------------
Confidence            99999999999999999999652  2222222222333333321100                                 


Q ss_pred             hcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                              ......++.++.+||.+||+.||++|||+++|++
T Consensus       288 --------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  321 (345)
T 2v62_A          288 --------WAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKK  321 (345)
T ss_dssp             --------HSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             --------hccccccHHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence                    0001256779999999999999999999999875

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=6.6e-46  Score=371.58  Aligned_cols=247  Identities=19%  Similarity=0.326  Sum_probs=206.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ..+|++.++||+|+||.||+|.+..++..||||+++......+.+.+|+.++++++|+||     +++++++...+.+||
T Consensus       219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~l~~~~~~~~~~~l  293 (495)
T 1opk_A          219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNL-----VQLLGVCTREPPFYI  293 (495)
T ss_dssp             GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTB-----CCEEEEECSSSSCEE
T ss_pred             HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCE-----eeEEEEEecCCcEEE
Confidence            357999999999999999999999999999999998766667789999999999988877     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.||+.||+|||++||+||||||+|||++.++                  
T Consensus       294 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~------------------  355 (495)
T 1opk_A          294 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENH------------------  355 (495)
T ss_dssp             EEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG------------------
T ss_pred             EEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCC------------------
Confidence            99999 89999999876656799999999999999999999999999999999999997665                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                               .+||+|||++.......    ....+|..|+|||++.+..++.++|||||||++|||++ |..||.+.+..
T Consensus       356 ---------~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~  426 (495)
T 1opk_A          356 ---------LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS  426 (495)
T ss_dssp             ---------CEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG
T ss_pred             ---------cEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH
Confidence                     45666666665432211    12356778999999998899999999999999999999 99999877655


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+....                       +                          ......++..+.+||.+||+
T Consensus       427 ~~~~~~~~~~-----------------------~--------------------------~~~~~~~~~~l~~li~~cl~  457 (495)
T 1opk_A          427 QVYELLEKDY-----------------------R--------------------------MERPEGCPEKVYELMRACWQ  457 (495)
T ss_dssp             GHHHHHHTTC-----------------------C--------------------------CCCCTTCCHHHHHHHHHHTC
T ss_pred             HHHHHHHcCC-----------------------C--------------------------CCCCCCCCHHHHHHHHHHcC
Confidence            4443332110                       0                          01123456789999999999


Q ss_pred             cCCCCCCCHHHHhc
Q 013941          405 YDPAERLKAREALR  418 (433)
Q Consensus       405 ~dP~~R~ta~ell~  418 (433)
                      .||++|||+.+|++
T Consensus       458 ~dP~~RPs~~el~~  471 (495)
T 1opk_A          458 WNPSDRPSFAEIHQ  471 (495)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             cChhHCcCHHHHHH
Confidence            99999999999975

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=4.8e-46  Score=353.64  Aligned_cols=258  Identities=19%  Similarity=0.270  Sum_probs=206.6

Q ss_pred             ccCCCeEEeccccccccEEEEEEE-----ecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecce
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECF-----DNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNW  161 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~-----~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~  161 (433)
                      ...++|++.+.||+|+||.||+|+     +..+++.||||++...  ......+.+|+.+++++.|+||     ++++++
T Consensus        27 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~  101 (327)
T 2yfx_A           27 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNI-----VRCIGV  101 (327)
T ss_dssp             CCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEE
T ss_pred             CChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCC-----CeEEEE
Confidence            345689999999999999999999     5567889999998642  3445667889999999988877     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccc
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSY-----RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV  235 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l  235 (433)
                      +.+.+..|+||||+ +++|.+++.....     ..+++..++.++.||+.||.|||++||+||||||+|||++.++    
T Consensus       102 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~----  177 (327)
T 2yfx_A          102 SLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPG----  177 (327)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSS----
T ss_pred             EcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCC----
Confidence            99999999999999 9999999987532     3589999999999999999999999999999999999997544    


Q ss_pred             cCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHH
Q 013941          236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE  310 (433)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~e  310 (433)
                                          ....++|+|||++.....     ......||+.|+|||++.+..++.++|||||||++|+
T Consensus       178 --------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e  237 (327)
T 2yfx_A          178 --------------------PGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWE  237 (327)
T ss_dssp             --------------------TTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             --------------------CcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHH
Confidence                                234578888887754322     1233567899999999998899999999999999999


Q ss_pred             HHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccC
Q 013941          311 LCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD  389 (433)
Q Consensus       311 l~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (433)
                      |++ |..||...........+......                                                 ....
T Consensus       238 llt~g~~p~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~  268 (327)
T 2yfx_A          238 IFSLGYMPYPSKSNQEVLEFVTSGGRM-------------------------------------------------DPPK  268 (327)
T ss_dssp             HHTTSCCSSTTCCHHHHHHHHHTTCCC-------------------------------------------------CCCT
T ss_pred             HHcCCCCCCCCcCHHHHHHHHhcCCCC-------------------------------------------------CCCC
Confidence            998 99999887765554433321100                                                 0112


Q ss_pred             CchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          390 HSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       390 ~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      .++..+.+||.+||+.||++|||+.++++|.|+..
T Consensus       269 ~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~  303 (327)
T 2yfx_A          269 NCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  303 (327)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHh
Confidence            45678999999999999999999999999988653

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.8e-45  Score=339.28  Aligned_cols=245  Identities=24%  Similarity=0.361  Sum_probs=204.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.+.||+|+||.||+|.+. +++.||+|++.......+.+.+|+.++++++|+++     +++++++.+.+..++|
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~~~~lv   81 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKL-----VQLYGVCLEQAPICLV   81 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTB-----CCEEEEECSSSSCEEE
T ss_pred             hheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCE-----eeEEEEEccCCCeEEE
Confidence            57999999999999999999986 67789999998766566788999999999988777     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+||+++.++                   
T Consensus        82 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~-------------------  141 (267)
T 3t9t_A           82 TEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQ-------------------  141 (267)
T ss_dssp             ECCCTTCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGG-------------------
T ss_pred             EeCCCCCcHHHHHhhCc-ccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCC-------------------
Confidence            9999 899999998653 3689999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                              .++|+|||++......    .....+|..|+|||++.+..++.++||||||+++|+|++ |..||.......
T Consensus       142 --------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~  213 (267)
T 3t9t_A          142 --------VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE  213 (267)
T ss_dssp             --------CEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH
T ss_pred             --------CEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH
Confidence                    4677777766543221    122467788999999998899999999999999999999 899998877665


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+......                                                 ......+..+.+||.+||+.
T Consensus       214 ~~~~i~~~~~~-------------------------------------------------~~~~~~~~~l~~li~~~l~~  244 (267)
T 3t9t_A          214 VVEDISTGFRL-------------------------------------------------YKPRLASTHVYQIMNHCWRE  244 (267)
T ss_dssp             HHHHHHTTCCC-------------------------------------------------CCCTTSCHHHHHHHHHHTCS
T ss_pred             HHHHHhcCCcC-------------------------------------------------CCCccCcHHHHHHHHHHccC
Confidence            55444321100                                                 01123466899999999999


Q ss_pred             CCCCCCCHHHHhcC
Q 013941          406 DPAERLKAREALRH  419 (433)
Q Consensus       406 dP~~R~ta~ell~h  419 (433)
                      ||++|||+.+++++
T Consensus       245 ~p~~Rps~~~ll~~  258 (267)
T 3t9t_A          245 RPEDRPAFSRLLRQ  258 (267)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             ChhhCcCHHHHHHH
Confidence            99999999999864

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=9.4e-46  Score=353.80  Aligned_cols=249  Identities=20%  Similarity=0.288  Sum_probs=203.4

Q ss_pred             ccCCCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecce
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNW  161 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~  161 (433)
                      ...++|++.+.||+|+||.||+|++.     .+++.||||+++..  ....+.+.+|+.++++++|+||     ++++++
T Consensus        44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~  118 (343)
T 1luf_A           44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNI-----VKLLGV  118 (343)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTB-----CCEEEE
T ss_pred             ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCE-----EEEEEE
Confidence            33468999999999999999999987     45589999999753  2345678899999999988777     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCC----------------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEec
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSY----------------------RSFPIDLVRELGRQLLESVAFMHELRLIHT  218 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~----------------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHr  218 (433)
                      +.+.+..|+||||+ +++|.+++.....                      ..+++..++.++.||+.||.|||++||+||
T Consensus       119 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~  198 (343)
T 1luf_A          119 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHR  198 (343)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             EccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            99999999999999 8899999986421                      468999999999999999999999999999


Q ss_pred             CCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCC
Q 013941          219 DLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGL  293 (433)
Q Consensus       219 Dikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~  293 (433)
                      ||||+|||++.++                           .+||+|||++.....     ......||+.|+|||++.+.
T Consensus       199 Dlkp~NIl~~~~~---------------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  251 (343)
T 1luf_A          199 DLATRNCLVGENM---------------------------VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYN  251 (343)
T ss_dssp             CCSGGGEEECGGG---------------------------CEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHC
T ss_pred             CCCcceEEECCCC---------------------------eEEEeecCCCcccccCccccccCCCcccceecChhhhccC
Confidence            9999999997655                           467777776654321     12234678999999999988


Q ss_pred             CCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHH
Q 013941          294 GWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR  372 (433)
Q Consensus       294 ~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (433)
                      .++.++|||||||++|+|++ |..||.+....+....+.....  +                                  
T Consensus       252 ~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~--~----------------------------------  295 (343)
T 1luf_A          252 RYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNI--L----------------------------------  295 (343)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCC--C----------------------------------
T ss_pred             CcCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHHHHhCCCc--C----------------------------------
Confidence            99999999999999999999 9999988776655444332100  0                                  


Q ss_pred             HHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                                   .....++.++.+||.+||+.||++|||+.++++
T Consensus       296 -------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~  328 (343)
T 1luf_A          296 -------------ACPENCPLELYNLMRLCWSKLPADRPSFCSIHR  328 (343)
T ss_dssp             -------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------------CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence                         011345678999999999999999999999985

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=1.7e-45  Score=348.24  Aligned_cols=254  Identities=26%  Similarity=0.351  Sum_probs=184.6

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchh--hH-HHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK--YR-EAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~-~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|++++.||+|+||.||+|++..+++.||||++.....  .. .....+..+++.+.|++|     +++++++.+.+..
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i-----~~~~~~~~~~~~~   99 (318)
T 2dyl_A           25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYI-----VQCFGTFITNTDV   99 (318)
T ss_dssp             GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTB-----CCEEEEEECSSEE
T ss_pred             ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCce-----eeEEEEEecCCcE
Confidence            579999999999999999999999999999999975432  22 223333445566666665     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||+++.+..+..... ..+++..++.++.||+.||.|||++ ||+||||||+|||++.++                
T Consensus       100 ~lv~e~~~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~----------------  162 (318)
T 2dyl_A          100 FIAMELMGTCAEKLKKRMQ-GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERG----------------  162 (318)
T ss_dssp             EEEECCCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTS----------------
T ss_pred             EEEEeccCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCC----------------
Confidence            9999999777766665432 4799999999999999999999995 999999999999997655                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhh-----CCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                 .+||+|||++......  .....||+.|+|||++.     +..++.++|||||||++|+|++|..||..
T Consensus       163 -----------~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  231 (318)
T 2dyl_A          163 -----------QIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKN  231 (318)
T ss_dssp             -----------CEEECCCTTC--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             -----------CEEEEECCCchhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCC
Confidence                       5677777776543322  22357899999999995     45688999999999999999999999986


Q ss_pred             CC-hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          321 HE-NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       321 ~~-~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      .. ..+....+.......                       +                        .....++.++.+||
T Consensus       232 ~~~~~~~~~~~~~~~~~~-----------------------~------------------------~~~~~~~~~l~~li  264 (318)
T 2dyl_A          232 CKTDFEVLTKVLQEEPPL-----------------------L------------------------PGHMGFSGDFQSFV  264 (318)
T ss_dssp             CCSHHHHHHHHHHSCCCC-----------------------C------------------------CSSSCCCHHHHHHH
T ss_pred             CCccHHHHHHHhccCCCC-----------------------C------------------------CccCCCCHHHHHHH
Confidence            43 333333322211000                       0                        01123567899999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          400 QGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .+||+.||++|||++|+++||||++.
T Consensus       265 ~~~l~~dp~~Rps~~~ll~h~~~~~~  290 (318)
T 2dyl_A          265 KDCLTKDHRKRPKYNKLLEHSFIKRY  290 (318)
T ss_dssp             HHHTCSCTTTSCCHHHHTTSHHHHHH
T ss_pred             HHHccCChhHCcCHHHHhhCHHHHhc
Confidence            99999999999999999999999853

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=1.1e-45  Score=351.11  Aligned_cols=245  Identities=20%  Similarity=0.282  Sum_probs=192.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcE----EEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKEL----VAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~----vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ++|++.+.||+|+||+||+|++..+++.    ||+|.++..  ......+.+|+.++++++|+|+     +++++++..+
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~   89 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV-----CRLLGICLTS   89 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTB-----CCEEEEEESS
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCE-----eEEEEEEecC
Confidence            5799999999999999999998887765    477777532  2345678899999999998887     9999999876


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      + .++|+||+ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.            
T Consensus        90 ~-~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~------------  155 (327)
T 3poz_A           90 T-VQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQH------------  155 (327)
T ss_dssp             S-EEEEEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTE------------
T ss_pred             C-eEEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCC------------
Confidence            5 77888998 999999998754 46999999999999999999999999999999999999987764            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                     +||+|||++.......     ....||..|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       156 ---------------~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~  220 (327)
T 3poz_A          156 ---------------VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPY  220 (327)
T ss_dssp             ---------------EEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             ---------------EEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCc
Confidence                           5556666554332211     12356889999999999999999999999999999999 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.........+.....                                                 .......+.++.+|
T Consensus       221 ~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~l  251 (327)
T 3poz_A          221 DGIPASEISSILEKGER-------------------------------------------------LPQPPICTIDVYMI  251 (327)
T ss_dssp             TTCCGGGHHHHHHTTCC-------------------------------------------------CCCCTTBCHHHHHH
T ss_pred             cCCCHHHHHHHHHcCCC-------------------------------------------------CCCCccCCHHHHHH
Confidence            87665544333322110                                                 00123346789999


Q ss_pred             HHHhcccCCCCCCCHHHHhcC
Q 013941          399 LQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~h  419 (433)
                      |.+||+.||++|||+.|++++
T Consensus       252 i~~~l~~~p~~Rps~~ell~~  272 (327)
T 3poz_A          252 MVKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             HHHHTCSCGGGSCCHHHHHHH
T ss_pred             HHHHcCCChhhCCCHHHHHHH
Confidence            999999999999999999865

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=2.1e-45  Score=363.91  Aligned_cols=243  Identities=22%  Similarity=0.325  Sum_probs=199.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC-CeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR-NHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~-~~~~l  170 (433)
                      ++|++.+.||+|+||.||+|.+.  ++.||||+++... ..+.+.+|+.++++++|+|+     +++++++... +.+|+
T Consensus       193 ~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~~~~~i  264 (450)
T 1k9a_A          193 KELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNL-----VQLLGVIVEEKGGLYI  264 (450)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSCT-TSHHHHHHHHHHHTCCCTTB-----CCEEEEEECTTSCEEE
T ss_pred             HHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCch-HHHHHHHHHHHHHhccCCCE-----EEEEEEEEcCCCceEE
Confidence            67999999999999999999864  7789999997644 45678899999999988877     9999987654 48999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.||+.||+|||++||+||||||+|||++.++                  
T Consensus       265 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~------------------  326 (450)
T 1k9a_A          265 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN------------------  326 (450)
T ss_dssp             EEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTS------------------
T ss_pred             EEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCC------------------
Confidence            99999 89999999877655589999999999999999999999999999999999996654                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLA  328 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~  328 (433)
                               .+||+|||++...........+|..|+|||++.+..++.++|||||||++|||++ |..||.+....+...
T Consensus       327 ---------~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~  397 (450)
T 1k9a_A          327 ---------VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVP  397 (450)
T ss_dssp             ---------CEEECCCTTCEECC------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHH
T ss_pred             ---------CEEEeeCCCcccccccccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence                     5777788877654444344467889999999999999999999999999999998 999998766554443


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+....                       +                          ......+++++.+||.+||+.||+
T Consensus       398 ~i~~~~-----------------------~--------------------------~~~p~~~~~~l~~li~~cl~~dp~  428 (450)
T 1k9a_A          398 RVEKGY-----------------------K--------------------------MDAPDGCPPAVYDVMKNCWHLDAA  428 (450)
T ss_dssp             HHHTTC-----------------------C--------------------------CCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             HHHcCC-----------------------C--------------------------CCCCCcCCHHHHHHHHHHcCCChh
Confidence            332210                       0                          011234577999999999999999


Q ss_pred             CCCCHHHHhc
Q 013941          409 ERLKAREALR  418 (433)
Q Consensus       409 ~R~ta~ell~  418 (433)
                      +|||+.++++
T Consensus       429 ~Rpt~~~l~~  438 (450)
T 1k9a_A          429 TRPTFLQLRE  438 (450)
T ss_dssp             GSCCHHHHHH
T ss_pred             HCcCHHHHHH
Confidence            9999999874

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=2.1e-45  Score=339.55  Aligned_cols=252  Identities=23%  Similarity=0.321  Sum_probs=195.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .++|++.+.||+|+||.||+|.+.  ++.||||+++...     ...+.+.+|+.+++.++|+++     +++++++.+.
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~   78 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNI-----IALRGVCLKE   78 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTB-----CCEEEEECCC
T ss_pred             hhheeeeeeeccCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCE-----eeEEEEEecC
Confidence            367999999999999999999864  7889999986532     234667889999999988877     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC---cEecCCCCCcEEEeeCCcccccCcccc
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR---LIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~---ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      +..++||||+ +++|.+++...   .+++..++.++.||+.||.|||++|   |+||||||+|||++..+..        
T Consensus        79 ~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~--------  147 (271)
T 3dtc_A           79 PNLCLVMEFARGGPLNRVLSGK---RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVEN--------  147 (271)
T ss_dssp             --CEEEEECCTTEEHHHHHTSS---CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSS--------
T ss_pred             CceEEEEEcCCCCCHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEeccccc--------
Confidence            9999999999 89999998643   6999999999999999999999999   9999999999999753210        


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                 .......+||+|||++...... .....||+.|+|||++.+..++.++|||||||++|+|++|+.||.+
T Consensus       148 -----------~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  216 (271)
T 3dtc_A          148 -----------GDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRG  216 (271)
T ss_dssp             -----------SCCSSCCEEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTT
T ss_pred             -----------ccccCcceEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                       0012457899999998754433 2345799999999999998999999999999999999999999988


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+.......+......                                                ......++..+.+||.
T Consensus       217 ~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~li~  248 (271)
T 3dtc_A          217 IDGLAVAYGVAMNKLA------------------------------------------------LPIPSTCPEPFAKLME  248 (271)
T ss_dssp             SCHHHHHHHHHTSCCC------------------------------------------------CCCCTTCCHHHHHHHH
T ss_pred             CCHHHHHHhhhcCCCC------------------------------------------------CCCCcccCHHHHHHHH
Confidence            7665544332211100                                                0112345678999999


Q ss_pred             HhcccCCCCCCCHHHHhcC
Q 013941          401 GLLRYDPAERLKAREALRH  419 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~h  419 (433)
                      +||+.||++|||+.|+++|
T Consensus       249 ~~l~~~p~~Rps~~e~l~~  267 (271)
T 3dtc_A          249 DCWNPDPHSRPSFTNILDQ  267 (271)
T ss_dssp             HHTCSSGGGSCCHHHHHHH
T ss_pred             HHhcCCcccCcCHHHHHHH
Confidence            9999999999999999864

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=9.5e-46  Score=349.32  Aligned_cols=248  Identities=19%  Similarity=0.323  Sum_probs=201.5

Q ss_pred             CCCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      .++|++.+.||+|+||.||+|++.     .+++.||+|++...  ....+.+.+|+.+++.++|+||     +++++++.
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~   96 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHV-----IKLYGACS   96 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEEC
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCce-----eeEEEEEe
Confidence            367999999999999999999873     45689999999753  2344677889999999988777     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCC----------------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCC
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSY----------------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDL  220 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~----------------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDi  220 (433)
                      +.+..++||||+ +++|.+++.....                      ..+++..++.++.||+.||+|||++||+||||
T Consensus        97 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~di  176 (314)
T 2ivs_A           97 QDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDL  176 (314)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             cCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCccccc
Confidence            999999999999 8999999986542                      24899999999999999999999999999999


Q ss_pred             CCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCC
Q 013941          221 KPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGW  295 (433)
Q Consensus       221 kp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~  295 (433)
                      ||+|||++.++.                           +||+|||++.......     ....+|+.|+|||++.+..+
T Consensus       177 kp~NIli~~~~~---------------------------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  229 (314)
T 2ivs_A          177 AARNILVAEGRK---------------------------MKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIY  229 (314)
T ss_dssp             SGGGEEEETTTE---------------------------EEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEE
T ss_pred             chheEEEcCCCC---------------------------EEEccccccccccccccceeccCCCCcccccChhhhcCCCc
Confidence            999999987664                           5666666665432221     22356888999999998889


Q ss_pred             CccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHH
Q 013941          296 NYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV  374 (433)
Q Consensus       296 ~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (433)
                      +.++|||||||++|+|++ |..||.+.........+.....                                       
T Consensus       230 ~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~---------------------------------------  270 (314)
T 2ivs_A          230 TTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHR---------------------------------------  270 (314)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCC---------------------------------------
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHhhcCCc---------------------------------------
Confidence            999999999999999999 9999987665444333221100                                       


Q ss_pred             HHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                                ......++.++.+||.+||+.||++|||+.|++++
T Consensus       271 ----------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~  305 (314)
T 2ivs_A          271 ----------MERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKD  305 (314)
T ss_dssp             ----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                      01123457789999999999999999999999864

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=3.3e-46  Score=361.55  Aligned_cols=245  Identities=21%  Similarity=0.340  Sum_probs=199.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++|++.+.||+|+||.||+|++..+++.||||+++...  ...+.+.+|+.++++++|+||     +++++++...+.+|
T Consensus       114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~~~~~~~~~  188 (377)
T 3cbl_A          114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNI-----VRLIGVCTQKQPIY  188 (377)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTB-----CCEEEEECSSSSCE
T ss_pred             HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCE-----EEEEEEEecCCCcE
Confidence            57999999999999999999999999999999987432  233457789999999988777     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.                
T Consensus       189 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~----------------  251 (377)
T 3cbl_A          189 IVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNV----------------  251 (377)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCC----------------
T ss_pred             EEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCc----------------
Confidence            999999 899999998653 35899999999999999999999999999999999999977664                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHE  322 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~  322 (433)
                                 +||+|||++.......     ....++..|+|||++.+..++.++|||||||++|||++ |..||.+..
T Consensus       252 -----------~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~  320 (377)
T 3cbl_A          252 -----------LKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS  320 (377)
T ss_dssp             -----------EEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC
T ss_pred             -----------EEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence                       4555555554322111     11245678999999998889999999999999999998 999998877


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+....+....                       ..                          .....++.++.+||.+|
T Consensus       321 ~~~~~~~~~~~~-----------------------~~--------------------------~~~~~~~~~l~~li~~c  351 (377)
T 3cbl_A          321 NQQTREFVEKGG-----------------------RL--------------------------PCPELCPDAVFRLMEQC  351 (377)
T ss_dssp             HHHHHHHHHTTC-----------------------CC--------------------------CCCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-----------------------CC--------------------------CCCCCCCHHHHHHHHHH
Confidence            655444332210                       00                          01123467899999999


Q ss_pred             cccCCCCCCCHHHHhc
Q 013941          403 LRYDPAERLKAREALR  418 (433)
Q Consensus       403 L~~dP~~R~ta~ell~  418 (433)
                      |+.||++|||++++++
T Consensus       352 l~~dP~~Rps~~~i~~  367 (377)
T 3cbl_A          352 WAYEPGQRPSFSTIYQ  367 (377)
T ss_dssp             TCSSGGGSCCHHHHHH
T ss_pred             cCCCchhCcCHHHHHH
Confidence            9999999999999975

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-45  Score=350.89  Aligned_cols=250  Identities=20%  Similarity=0.281  Sum_probs=198.6

Q ss_pred             CCCeEEeccccccccEEEEEEEe-----cCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEeccee
Q 013941           91 TPRYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~-----~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~  162 (433)
                      .++|++.+.||+|+||.||+|++     ..+++.||||++...  ....+.+.+|+.++.++ .|+||     +++++++
T Consensus        44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~i-----v~~~~~~  118 (344)
T 1rjb_A           44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENI-----VNLLGAC  118 (344)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTB-----CCEEEEE
T ss_pred             HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCe-----eeEEEEE
Confidence            36899999999999999999997     346678999999743  23456788999999999 78877     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcCC---------------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCC
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNSY---------------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDL  220 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~~---------------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDi  220 (433)
                      ...+..++||||+ +++|.+++.....                     ..+++..++.++.||+.||+|||++||+||||
T Consensus       119 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Di  198 (344)
T 1rjb_A          119 TLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDL  198 (344)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTC
T ss_pred             eeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            9999999999999 8999999986542                     23789999999999999999999999999999


Q ss_pred             CCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCC
Q 013941          221 KPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGW  295 (433)
Q Consensus       221 kp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~  295 (433)
                      ||+|||++.++.                           +||+|||++.......     ....||+.|+|||++.+..+
T Consensus       199 kp~NIll~~~~~---------------------------~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  251 (344)
T 1rjb_A          199 AARNVLVTHGKV---------------------------VKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIY  251 (344)
T ss_dssp             SGGGEEEETTTE---------------------------EEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCC
T ss_pred             ChhhEEEcCCCc---------------------------EEeCCCccCcccccCccceeccCccCccCccCHHHhccCCC
Confidence            999999987664                           5555555554332211     22467889999999998899


Q ss_pred             CccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHH
Q 013941          296 NYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV  374 (433)
Q Consensus       296 ~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (433)
                      +.++|||||||++|+|++ |..||.+.........+......                                      
T Consensus       252 ~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~--------------------------------------  293 (344)
T 1rjb_A          252 TIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFK--------------------------------------  293 (344)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCC--------------------------------------
T ss_pred             ChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHHHHHHhcCCC--------------------------------------
Confidence            999999999999999998 99999876544333222211000                                      


Q ss_pred             HHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCC
Q 013941          375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHP  420 (433)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp  420 (433)
                                .......+.++.+||.+||+.||++|||+.|+++|-
T Consensus       294 ----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  329 (344)
T 1rjb_A          294 ----------MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  329 (344)
T ss_dssp             ----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ----------CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence                      001123467899999999999999999999998753

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=3.2e-45  Score=345.53  Aligned_cols=249  Identities=24%  Similarity=0.358  Sum_probs=200.4

Q ss_pred             CCCeEEeccccccccEEEEEEEe-----cCCCcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEeccee
Q 013941           91 TPRYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~-----~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~  162 (433)
                      .++|++.+.||+|+||.||+|++     ..+++.||+|+++...  ...+.+.+|+.+++++ .|+|+     +++++++
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i-----~~~~~~~   96 (313)
T 1t46_A           22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNI-----VNLLGAC   96 (313)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEE
T ss_pred             hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCe-----eeEEEEE
Confidence            36899999999999999999984     4577899999997543  3456788999999999 78777     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcCC----------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcE
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNSY----------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENI  225 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~~----------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NI  225 (433)
                      .+.+..++||||+ +++|.+++.....                ..+++..++.++.||+.||.|||++||+||||||+||
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Ni  176 (313)
T 1t46_A           97 TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI  176 (313)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             ecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceE
Confidence            9999999999999 8899999987542                2489999999999999999999999999999999999


Q ss_pred             EEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccch
Q 013941          226 LLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCD  300 (433)
Q Consensus       226 li~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~D  300 (433)
                      |++.++.+                           ||+|||++.......     ....||+.|+|||++.+..++.++|
T Consensus       177 l~~~~~~~---------------------------kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  229 (313)
T 1t46_A          177 LLTHGRIT---------------------------KICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESD  229 (313)
T ss_dssp             EEETTTEE---------------------------EECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHH
T ss_pred             EEcCCCCE---------------------------EEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHH
Confidence            99877655                           555555444332221     1236788999999999989999999


Q ss_pred             HHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcC
Q 013941          301 LWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR  379 (433)
Q Consensus       301 iwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (433)
                      ||||||++|+|++ |..||.+.........+.......                                          
T Consensus       230 i~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~------------------------------------------  267 (313)
T 1t46_A          230 VWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRM------------------------------------------  267 (313)
T ss_dssp             HHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCC------------------------------------------
T ss_pred             HHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCC------------------------------------------
Confidence            9999999999999 999998765443333222211000                                          


Q ss_pred             chhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                            ......+..+.+||.+||+.||++|||+.|++++
T Consensus       268 ------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  301 (313)
T 1t46_A          268 ------LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQL  301 (313)
T ss_dssp             ------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------CCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHH
Confidence                  0113456789999999999999999999999864

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.7e-46  Score=366.01  Aligned_cols=281  Identities=21%  Similarity=0.320  Sum_probs=206.0

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ..+.++|++.+.||+|+||+||+|++..+++.||||++....  ...+.+.+|+.++++++|+||     +++++++...
T Consensus         5 ~~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnI-----v~~~~~~~~~   79 (396)
T 4eut_A            5 STSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNI-----VKLFAIEEET   79 (396)
T ss_dssp             ECSSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTB-----CCEEEEEECT
T ss_pred             CCCCCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCC-----CeEEEeeccC
Confidence            345678999999999999999999999999999999997533  334667889999999988877     9999988765


Q ss_pred             C--eEEEEEccC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          166 N--HICIVFEKL-GPSLYDFLRKNSY-RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       166 ~--~~~lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      +  ..|+||||+ +++|.+++..... ..+++..++.++.||+.||+|||++||+||||||+|||+....          
T Consensus        80 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~----------  149 (396)
T 4eut_A           80 TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGE----------  149 (396)
T ss_dssp             TTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECT----------
T ss_pred             CCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecC----------
Confidence            4  889999999 8999999975432 2399999999999999999999999999999999999984321          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhC--------CCCCccchHHHHHHHHHHH
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILG--------LGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~--------~~~~~~~DiwSlG~il~el  311 (433)
                                   +....+||+|||++......  .....||+.|+|||++.+        ..++.++|||||||++|||
T Consensus       150 -------------~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el  216 (396)
T 4eut_A          150 -------------DGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHA  216 (396)
T ss_dssp             -------------TSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CCceeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHH
Confidence                         23345788888888654332  234579999999999875        4578899999999999999


Q ss_pred             HhCCCCCCCCCh-HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC
Q 013941          312 CSGEALFQTHEN-LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH  390 (433)
Q Consensus       312 ~~g~~pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (433)
                      ++|+.||..... ......+.+.....|..........      ......|......                .......
T Consensus       217 ~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------~~~~~~~~~~~~~----------------~~~l~~~  274 (396)
T 4eut_A          217 ATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKA------ENGPIDWSGDMPV----------------SCSLSRG  274 (396)
T ss_dssp             HHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECS------TTCCEEEESSCCT----------------TCSSCHH
T ss_pred             HHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheec------cCCCcccCccCCc----------------ccccchH
Confidence            999999965332 1122223333333332211110000      0001111110000                0011123


Q ss_pred             chHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          391 SAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       391 ~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+..+.+||.+||++||++|+|++|+++
T Consensus       275 ~~~~l~~ll~~~L~~dP~~R~s~~e~l~  302 (396)
T 4eut_A          275 LQVLLTPVLANILEADQEKCWGFDQFFA  302 (396)
T ss_dssp             HHHHHHHHHHHHSCCCTTTSCCHHHHHH
T ss_pred             HHhhchHHHHHhhccChhhhccHHHHHH
Confidence            4668899999999999999999999854

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.4e-45  Score=342.76  Aligned_cols=247  Identities=23%  Similarity=0.320  Sum_probs=192.4

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCC---CcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEK---KELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..++|++.+.||+|+||.||+|.+..+   +..||+|++...  ....+.+.+|+.++++++|+|+     +++++++. 
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~-   86 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI-----VKLIGVIT-   86 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEEC-
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCcc-----ceEEEEEc-
Confidence            346899999999999999999998654   457999998643  3345678889999999988777     99999875 


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ++..|+||||+ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.           
T Consensus        87 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~-----------  154 (281)
T 1mp8_A           87 ENPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDC-----------  154 (281)
T ss_dssp             SSSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTE-----------
T ss_pred             cCccEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCC-----------
Confidence            46789999999 889999998653 36999999999999999999999999999999999999987664           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                      +||+|||++.......    ....+|+.|+|||++.+..++.++|||||||++|+|++ |..||
T Consensus       155 ----------------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf  218 (281)
T 1mp8_A          155 ----------------VKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPF  218 (281)
T ss_dssp             ----------------EEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             ----------------EEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCC
Confidence                            5666666655432211    22356788999999998899999999999999999997 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+....+....+.....                                                 ......++..+.+|
T Consensus       219 ~~~~~~~~~~~i~~~~~-------------------------------------------------~~~~~~~~~~l~~l  249 (281)
T 1mp8_A          219 QGVKNNDVIGRIENGER-------------------------------------------------LPMPPNCPPTLYSL  249 (281)
T ss_dssp             TTCCGGGHHHHHHTTCC-------------------------------------------------CCCCTTCCHHHHHH
T ss_pred             CcCCHHHHHHHHHcCCC-------------------------------------------------CCCCCCCCHHHHHH
Confidence            87766554443322100                                                 00123457789999


Q ss_pred             HHHhcccCCCCCCCHHHHhcC
Q 013941          399 LQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~h  419 (433)
                      |.+||+.||++|||+.|++++
T Consensus       250 i~~~l~~~p~~Rps~~~l~~~  270 (281)
T 1mp8_A          250 MTKCWAYDPSRRPRFTELKAQ  270 (281)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHccCChhhCcCHHHHHHH
Confidence            999999999999999999863

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.7e-45  Score=344.64  Aligned_cols=263  Identities=22%  Similarity=0.314  Sum_probs=196.9

Q ss_pred             cCCCeEEeccccccccEEEEEEE----ecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           90 LTPRYRILSKMGEGTFGQVVECF----DNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~----~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..++|++++.||+|+||+||+|+    +..+++.||||++.... ...+.+.+|+.++++++|+|+     +++++++..
T Consensus         8 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~   82 (295)
T 3ugc_A            8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI-----VKYKGVCYS   82 (295)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEECH
T ss_pred             CHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEec
Confidence            34689999999999999999998    66789999999987543 344678899999999988877     999998754


Q ss_pred             --CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          165 --RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       165 --~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                        ...+++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.         
T Consensus        83 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~---------  152 (295)
T 3ugc_A           83 AGRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENR---------  152 (295)
T ss_dssp             HHHTSCEEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTE---------
T ss_pred             CCCCceEEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCe---------
Confidence              45689999999 999999998754 35999999999999999999999999999999999999987664         


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                        +||+|||++.......      ....+|..|+|||++.+..++.++|||||||++|+|++|.
T Consensus       153 ------------------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~  214 (295)
T 3ugc_A          153 ------------------VKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYI  214 (295)
T ss_dssp             ------------------EEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ------------------EEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcc
Confidence                              5666666665432211      1235677899999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||......     ..+..+..+......  .........+                          ........++.++
T Consensus       215 ~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~--------------------------~~~~~~~~~~~~l  261 (295)
T 3ugc_A          215 EKSKSPPAE-----FMRMIGNDKQGQMIV--FHLIELLKNN--------------------------GRLPRPDGCPDEI  261 (295)
T ss_dssp             CTTCSHHHH-----HHHHHCTTCCTHHHH--HHHHHHHHTT--------------------------CCCCCCTTCCHHH
T ss_pred             cccCCChHH-----HHhhhcCccccchhH--HHHHHHHhcc--------------------------CcCCCCcCcCHHH
Confidence            998643211     111111111000000  0000000000                          0011234567899


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q 013941          396 IDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||.+||+.||++|||+.|+++
T Consensus       262 ~~li~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          262 YMIMTECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHcCCChhhCCCHHHHHH
Confidence            99999999999999999999975

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=3.4e-46  Score=353.85  Aligned_cols=194  Identities=25%  Similarity=0.283  Sum_probs=164.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC----Ce
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR----NH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~----~~  167 (433)
                      ++|++.+.||+|+||+||+|++.  ++.||||++...........+|+.++.+++|+||     +++++++...    ..
T Consensus        24 ~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~~~~~~~~~~~   96 (322)
T 3soc_A           24 MPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENI-----LQFIGAEKRGTSVDVD   96 (322)
T ss_dssp             EEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTB-----CCEEEEEEEECSSSEE
T ss_pred             hhchhhheecccCceEEEEEEEC--CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCc-----hhhcceeccCCCCCce
Confidence            57999999999999999999865  7899999998766666666778888888888777     9999998763    35


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC----------CcEecCCCCCcEEEeeCCccccc
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL----------RLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~----------~ivHrDikp~NIli~~~~~~~l~  236 (433)
                      +++||||+ +++|.+++...   .+++..++.++.||+.||+|||+.          ||+||||||+|||++.++     
T Consensus        97 ~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~-----  168 (322)
T 3soc_A           97 LWLITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNL-----  168 (322)
T ss_dssp             EEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTC-----
T ss_pred             EEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCC-----
Confidence            89999999 88999999875   499999999999999999999999          999999999999996654     


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCC-----CCCccchHHHHHH
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGL-----GWNYPCDLWSVGC  306 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~-----~~~~~~DiwSlG~  306 (433)
                                            .+||+|||++......     .....||+.|+|||++.+.     .++.++|||||||
T Consensus       169 ----------------------~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~  226 (322)
T 3soc_A          169 ----------------------TACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGL  226 (322)
T ss_dssp             ----------------------CEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHH
T ss_pred             ----------------------eEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHH
Confidence                                  5677777777543321     2225799999999999873     4567899999999


Q ss_pred             HHHHHHhCCCCCCCCC
Q 013941          307 ILVELCSGEALFQTHE  322 (433)
Q Consensus       307 il~el~~g~~pf~~~~  322 (433)
                      ++|||++|+.||.+..
T Consensus       227 il~el~tg~~pf~~~~  242 (322)
T 3soc_A          227 VLWELASRCTAADGPV  242 (322)
T ss_dssp             HHHHHHTTBTTSSSCC
T ss_pred             HHHHHHhCCCCCCCCc
Confidence            9999999999997654

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=6.4e-45  Score=361.56  Aligned_cols=255  Identities=21%  Similarity=0.276  Sum_probs=200.3

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+.++|++.++||+|+||.||+|++..+++.||||++..... ...+.+|+.+++.+.|++.    +..+..++...+..
T Consensus         4 ~i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~il~~L~~~~~----i~~i~~~~~~~~~~   78 (483)
T 3sv0_A            4 RVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK-HPQLLYESKIYRILQGGTG----IPNVRWFGVEGDYN   78 (483)
T ss_dssp             EETTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS-SCCHHHHHHHHHHTTTSTT----CCCEEEEEEETTEE
T ss_pred             CcCCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc-cHHHHHHHHHHHHhcCCCC----CCeEEEEEeeCCEE
Confidence            456789999999999999999999999999999998864332 2357889999999988643    24455566678899


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +|||||++++|.+++.... ..+++..++.|+.||+.||+|||++|||||||||+||||+.+                  
T Consensus        79 ~lvme~~g~sL~~ll~~~~-~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~------------------  139 (483)
T 3sv0_A           79 VLVMDLLGPSLEDLFNFCS-RKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLG------------------  139 (483)
T ss_dssp             EEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCG------------------
T ss_pred             EEEEECCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecC------------------
Confidence            9999999999999998543 479999999999999999999999999999999999999421                  


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC----------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH----------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~----------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                            +....+||+|||++.......          ....||..|+|||++.+..++.++|||||||+||||++|+.||
T Consensus       140 ------~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf  213 (483)
T 3sv0_A          140 ------RRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPW  213 (483)
T ss_dssp             ------GGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ------CCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCC
Confidence                  123357777777776443321          2458999999999999999999999999999999999999999


Q ss_pred             CCCChHH---HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          319 QTHENLE---HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       319 ~~~~~~~---~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .+.....   .+..+.....                                             ..........++.++
T Consensus       214 ~~~~~~~~~~~~~~i~~~~~---------------------------------------------~~~~~~l~~~~p~~l  248 (483)
T 3sv0_A          214 QGLKAGTKKQKYEKISEKKV---------------------------------------------ATSIEALCRGYPTEF  248 (483)
T ss_dssp             SSCCCSSHHHHHHHHHHHHH---------------------------------------------HSCHHHHHTTSCHHH
T ss_pred             ccccchhHHHHHHHHhhccc---------------------------------------------cccHHHHhcCCcHHH
Confidence            8754422   2222211100                                             000111223557799


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q 013941          396 IDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||.+||+.||++||++++|++
T Consensus       249 ~~li~~cl~~dP~~RPs~~el~~  271 (483)
T 3sv0_A          249 ASYFHYCRSLRFDDKPDYSYLKR  271 (483)
T ss_dssp             HHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             HHHHHHHhcCChhhCcCHHHHHH
Confidence            99999999999999999988764

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=5.3e-46  Score=352.40  Aligned_cols=270  Identities=21%  Similarity=0.228  Sum_probs=203.0

Q ss_pred             ecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           85 AIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        85 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      .......++|++.+.||+|+||.||+|++ .+++.||||++.... ...+.+.+|+.+++.++|+||     +++++++.
T Consensus        32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~  105 (321)
T 2qkw_B           32 VDLEEATNNFDHKFLIGHGVFGKVYKGVL-RDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHL-----VSLIGFCD  105 (321)
T ss_dssp             SCCCCCCCCCSCCCCSCBCSSSEEEEEEC-TTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTB-----CCEEEECC
T ss_pred             HHHHHHHhccCccceeecCCCeeEEEEEE-CCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEc
Confidence            33455678999999999999999999996 468899999886533 345678899999999988777     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSY--RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      +.+..++||||+ +++|.+++.....  ..+++..+..++.||+.||+|||++||+||||||+|||++.++         
T Consensus       106 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~---------  176 (321)
T 2qkw_B          106 ERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENF---------  176 (321)
T ss_dssp             CTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTC---------
T ss_pred             CCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCC---------
Confidence            999999999999 8999999865432  3589999999999999999999999999999999999997655         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                        .+||+|||++......     .....||+.|+|||++.+..++.++|||||||++|+|++|+
T Consensus       177 ------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~  238 (321)
T 2qkw_B          177 ------------------VPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCAR  238 (321)
T ss_dssp             ------------------CEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCC
T ss_pred             ------------------CEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCC
Confidence                              4677777766543221     12346899999999999889999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||.+....+....+....                .....+......+                 +..........+..+
T Consensus       239 ~p~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l  285 (321)
T 2qkw_B          239 SAIVQSLPREMVNLAEWAV----------------ESHNNGQLEQIVD-----------------PNLADKIRPESLRKF  285 (321)
T ss_dssp             TTCSCSSSSSCCCHHHHTH----------------HHHTTTCCCSSSS-----------------SSCTTCSCHHHHHHH
T ss_pred             CcccccCcHHHHHHHHHhh----------------hccccccHHHhcC-----------------hhhccccCHHHHHHH
Confidence            9997644321110000000                0000000000000                 000001112346689


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHP  420 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp  420 (433)
                      .++|.+||+.||++|||+.|+++|-
T Consensus       286 ~~li~~~l~~dP~~Rps~~ell~~L  310 (321)
T 2qkw_B          286 GDTAVKCLALSSEDRPSMGDVLWKL  310 (321)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccCcCHHHHHHHH
Confidence            9999999999999999999999763

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=2.9e-45  Score=343.90  Aligned_cols=251  Identities=22%  Similarity=0.296  Sum_probs=188.5

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHH--HHhCCCCCcceeEecceecc
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQR--LARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~--l~~~~i~~~~~v~~~~~~~~  164 (433)
                      +..+.++|++.+.||+|+||+||+|++  +++.||||++....  .....+|.+++..  ++|+|+     +++++++..
T Consensus         3 ~~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~--~~~~~~e~~~~~~~~l~h~ni-----v~~~~~~~~   73 (301)
T 3q4u_A            3 QRTVARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSRD--EKSWFRETELYNTVMLRHENI-----LGFIASDMT   73 (301)
T ss_dssp             -CCCGGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGGG--HHHHHHHHHHHHHTCCCCTTB-----CCEEEEEEE
T ss_pred             cccccCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEecccc--chhhHHHHHHHHHhhccCcCe-----eeEEEeecc
Confidence            455678899999999999999999986  68899999987543  3445667777766  566665     888887543


Q ss_pred             ----CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCcEecCCCCCcEEEeeCC
Q 013941          165 ----RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH--------ELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       165 ----~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH--------~~~ivHrDikp~NIli~~~~  231 (433)
                          ...+++||||+ +++|.+++...   .+++..+..++.||+.||+|||        ++||+||||||+|||++.++
T Consensus        74 ~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~  150 (301)
T 3q4u_A           74 SRHSSTQLWLITHYHEMGSLYDYLQLT---TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNG  150 (301)
T ss_dssp             EETTEEEEEEEECCCTTCBHHHHHTTC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTS
T ss_pred             ccCCCceeEEehhhccCCCHHHHHhhc---ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCC
Confidence                46799999999 89999999654   6999999999999999999999        99999999999999997655


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-------cccccCCcccchhhhhCC------CCCcc
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-------SYVVSTRHYRAPEVILGL------GWNYP  298 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~gt~~y~aPE~~~~~------~~~~~  298 (433)
                                                 .+||+|||++.......       ....||+.|+|||++.+.      .++.+
T Consensus       151 ---------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~  203 (301)
T 3q4u_A          151 ---------------------------QCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKR  203 (301)
T ss_dssp             ---------------------------CEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHH
T ss_pred             ---------------------------CEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCch
Confidence                                       56777777765433221       224799999999999876      34579


Q ss_pred             chHHHHHHHHHHHHhC----------CCCCCCCCh----HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCC
Q 013941          299 CDLWSVGCILVELCSG----------EALFQTHEN----LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDG  364 (433)
Q Consensus       299 ~DiwSlG~il~el~~g----------~~pf~~~~~----~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (433)
                      +|||||||++|||++|          ..||.....    ......+.......+                     ..+. 
T Consensus       204 ~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~-  261 (301)
T 3q4u_A          204 VDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRP---------------------NIPN-  261 (301)
T ss_dssp             HHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCC---------------------CCCG-
T ss_pred             hhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCC---------------------CCCh-
Confidence            9999999999999999          788854321    111111111000000                     0000 


Q ss_pred             CCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          365 ATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                                          .......+.++.+||.+||+.||++|||+.|+++
T Consensus       262 --------------------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  295 (301)
T 3q4u_A          262 --------------------RWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK  295 (301)
T ss_dssp             --------------------GGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             --------------------hhccCccHHHHHHHHHHHhhcChhhCCCHHHHHH
Confidence                                0011234678999999999999999999999985

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=1.9e-45  Score=364.67  Aligned_cols=251  Identities=25%  Similarity=0.389  Sum_probs=205.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .++|++.+.||+|+||.||+|.+. ++..||||+++......+.+.+|+.++++++|+|+     +++++++. .+.+|+
T Consensus       187 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~l~~~~~-~~~~~l  259 (454)
T 1qcf_A          187 RESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKL-----VKLHAVVT-KEPIYI  259 (454)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTB-----CCEEEEEC-SSSCEE
T ss_pred             hHHeEEEEEcccCCceEEEEEEEC-CccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCE-----eeEEEEEe-CCccEE
Confidence            468999999999999999999975 46779999998766667889999999999988877     99999886 567899


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.||+.||+|||++||+||||||+|||++.++                  
T Consensus       260 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~------------------  321 (454)
T 1qcf_A          260 ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASL------------------  321 (454)
T ss_dssp             EECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTC------------------
T ss_pred             EEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCC------------------
Confidence            99999 99999999855334689999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                               .+||+|||++......    .....+|..|+|||++.+..++.++|||||||++|||++ |..||.+.+..
T Consensus       322 ---------~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~  392 (454)
T 1qcf_A          322 ---------VCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP  392 (454)
T ss_dssp             ---------CEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH
T ss_pred             ---------cEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH
Confidence                     5677777777653321    122356788999999998899999999999999999999 99999988776


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+.+....                                                 .....++.++.+||.+||+
T Consensus       393 ~~~~~i~~~~~~-------------------------------------------------~~~~~~~~~l~~li~~cl~  423 (454)
T 1qcf_A          393 EVIRALERGYRM-------------------------------------------------PRPENCPEELYNIMMRCWK  423 (454)
T ss_dssp             HHHHHHHHTCCC-------------------------------------------------CCCTTSCHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCC-------------------------------------------------CCCCCCCHHHHHHHHHHcc
Confidence            665554432110                                                 0113456789999999999


Q ss_pred             cCCCCCCCHHHHhc--CCCCCC
Q 013941          405 YDPAERLKAREALR--HPFFTR  424 (433)
Q Consensus       405 ~dP~~R~ta~ell~--hp~f~~  424 (433)
                      .||++|||+++|++  ..+++.
T Consensus       424 ~dp~~RPt~~~i~~~L~~~~~~  445 (454)
T 1qcf_A          424 NRPEERPTFEYIQSVLDDFYTA  445 (454)
T ss_dssp             SSGGGSCCHHHHHHHHHTSSSS
T ss_pred             CChhHCcCHHHHHHHHHHHHhc
Confidence            99999999999875  345543

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=1.6e-45  Score=355.91  Aligned_cols=245  Identities=23%  Similarity=0.310  Sum_probs=192.6

Q ss_pred             CCeEEeccccccccEEEEEEEec---CCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDN---EKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||.||+|++.   .++..||||+++..  ....+.+.+|+.++.+++|+||     +++++++.+.+
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-----v~~~~~~~~~~  119 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNI-----IRLEGVVTKSK  119 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEECSSS
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEeeCC
Confidence            57999999999999999999876   46778999998753  3445678899999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++              
T Consensus       120 ~~~lv~e~~~~~sL~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~--------------  184 (373)
T 2qol_A          120 PVMIVTEYMENGSLDSFLRKHD-AQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNL--------------  184 (373)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC--------------
T ss_pred             ceEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCC--------------
Confidence            999999999 999999998653 4699999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                   .+||+|||++.......      ....+|..|+|||++.+..++.++|||||||++|||++ |..||
T Consensus       185 -------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~  251 (373)
T 2qol_A          185 -------------VCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPY  251 (373)
T ss_dssp             -------------CEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTT
T ss_pred             -------------CEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCC
Confidence                         46666666665433221      11245778999999999899999999999999999998 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ......+....+......                                                 .....++..+.+|
T Consensus       252 ~~~~~~~~~~~i~~~~~~-------------------------------------------------~~~~~~~~~l~~l  282 (373)
T 2qol_A          252 WEMSNQDVIKAVDEGYRL-------------------------------------------------PPPMDCPAALYQL  282 (373)
T ss_dssp             TTCCHHHHHHHHHTTEEC-------------------------------------------------CCCTTCBHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCC-------------------------------------------------CCCccccHHHHHH
Confidence            887766554443321110                                                 0112346789999


Q ss_pred             HHHhcccCCCCCCCHHHHhc
Q 013941          399 LQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~  418 (433)
                      |.+||+.||++|||+.|+++
T Consensus       283 i~~cl~~dp~~RPs~~~i~~  302 (373)
T 2qol_A          283 MLDCWQKDRNNRPKFEQIVS  302 (373)
T ss_dssp             HHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHhCcChhhCcCHHHHHH
Confidence            99999999999999999875

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=9.9e-46  Score=351.13  Aligned_cols=246  Identities=21%  Similarity=0.261  Sum_probs=194.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcE----EEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKEL----VAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~----vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      .++|++++.||+|+||.||+|++..+++.    ||+|++....  .....+.+|+.++..++|+||     +++++++. 
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~-   85 (325)
T 3kex_A           12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHI-----VRLLGLCP-   85 (325)
T ss_dssp             TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTB-----CCEEEEEC-
T ss_pred             HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCc-----CeEEEEEc-
Confidence            36799999999999999999999888875    7777764322  223456679999999988877     99999886 


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ++..++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++            
T Consensus        86 ~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~------------  152 (325)
T 3kex_A           86 GSSLQLVTQYLPLGSLLDHVRQHR-GALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPS------------  152 (325)
T ss_dssp             BSSEEEEEECCTTCBSHHHHHSSG-GGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSS------------
T ss_pred             CCccEEEEEeCCCCCHHHHHHHcc-ccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCC------------
Confidence            46689999999 999999997642 3689999999999999999999999999999999999997665            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEAL  317 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~p  317 (433)
                                     .+||+|||++......     .....||..|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       153 ---------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p  217 (325)
T 3kex_A          153 ---------------QVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEP  217 (325)
T ss_dssp             ---------------CEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             ---------------eEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCC
Confidence                           4566666666543222     123467889999999998899999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.........+......                                                 .....++.++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~  248 (325)
T 3kex_A          218 YAGLRLAEVPDLLEKGERL-------------------------------------------------AQPQICTIDVYM  248 (325)
T ss_dssp             TTTSCTTHHHHHHHTTCBC-------------------------------------------------CCCTTBCTTTTH
T ss_pred             ccccCHHHHHHHHHcCCCC-------------------------------------------------CCCCcCcHHHHH
Confidence            9877655544433221100                                                 011223557889


Q ss_pred             HHHHhcccCCCCCCCHHHHhcC
Q 013941          398 LLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ||.+||+.||++|||+.|+++|
T Consensus       249 li~~~l~~dp~~Rps~~el~~~  270 (325)
T 3kex_A          249 VMVKCWMIDENIRPTFKELANE  270 (325)
T ss_dssp             HHHHHTCSCTTTSCCHHHHHHH
T ss_pred             HHHHHcCCChhhCcCHHHHHHH
Confidence            9999999999999999999876

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=3.2e-45  Score=340.58  Aligned_cols=250  Identities=27%  Similarity=0.346  Sum_probs=202.3

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--  164 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--  164 (433)
                      +..+.++|++.+.||+|+||.||+|++..+++.||+|++....   +.+.+|+.+++++.|+|+     +++++++..  
T Consensus         6 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~l~~l~h~~i-----~~~~~~~~~~~   77 (284)
T 2a19_B            6 DKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKLDHVNI-----VHYNGCWDGFD   77 (284)
T ss_dssp             CHHHHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS---GGGHHHHHHHHHCCCTTB-----CCEEEEEEEEE
T ss_pred             cchhccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc---HHHHHHHHHHHhCCCCCE-----EEEeeeEeccc
Confidence            4556678999999999999999999999999999999987543   346689999999988877     888887753  


Q ss_pred             --------------CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          165 --------------RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       165 --------------~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                                    ...+++||||+ +++|.+++.......+++..++.++.||+.||.|||++||+||||||+|||++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~  157 (284)
T 2a19_B           78 YDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVD  157 (284)
T ss_dssp             EC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEE
T ss_pred             cCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcC
Confidence                          45689999999 889999998664457999999999999999999999999999999999999987


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHH
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCI  307 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~i  307 (433)
                      ++.                           +||+|||++......  .....||+.|+|||++.+..++.++|||||||+
T Consensus       158 ~~~---------------------------~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  210 (284)
T 2a19_B          158 TKQ---------------------------VKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLI  210 (284)
T ss_dssp             TTE---------------------------EEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHH
T ss_pred             CCC---------------------------EEECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHH
Confidence            664                           566666666543322  233578999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhc
Q 013941          308 LVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH  387 (433)
Q Consensus       308 l~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (433)
                      +|+|++|..||....  .....+..  +                                                  ..
T Consensus       211 l~~l~~~~~~~~~~~--~~~~~~~~--~--------------------------------------------------~~  236 (284)
T 2a19_B          211 LAELLHVCDTAFETS--KFFTDLRD--G--------------------------------------------------II  236 (284)
T ss_dssp             HHHHHSCCSSHHHHH--HHHHHHHT--T--------------------------------------------------CC
T ss_pred             HHHHHhcCCcchhHH--HHHHHhhc--c--------------------------------------------------cc
Confidence            999999998874211  11100000  0                                                  01


Q ss_pred             cCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       388 ~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ...++..+.+||.+||+.||++|||+.|+++|.|.-..
T Consensus       237 ~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~  274 (284)
T 2a19_B          237 SDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKK  274 (284)
T ss_dssp             CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC
T ss_pred             cccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhh
Confidence            12346789999999999999999999999999876654

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.9e-45  Score=343.85  Aligned_cols=246  Identities=22%  Similarity=0.327  Sum_probs=193.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....    ...+.+.+|+.+++++.|+++     +++++++..++.
T Consensus        34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i-----v~~~~~~~~~~~  108 (309)
T 2h34_A           34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHV-----VPIHDFGEIDGQ  108 (309)
T ss_dssp             CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEEEETTE
T ss_pred             ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCe-----eEEEEEEeeCCe
Confidence            57999999999999999999999999999999987532    234667889999999988777     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .|+||||+ +++|.+++....  .+++..++.++.||+.||.|||++||+||||||+|||++.++               
T Consensus       109 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~---------------  171 (309)
T 2h34_A          109 LYVDMRLINGVDLAAMLRRQG--PLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADD---------------  171 (309)
T ss_dssp             EEEEEECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS---------------
T ss_pred             EEEEEEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCC---------------
Confidence            99999999 889999998764  699999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                  .+||+|||++......    .....||+.|+|||++.+..++.++|||||||++|+|++|..||.+..
T Consensus       172 ------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  239 (309)
T 2h34_A          172 ------------FAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ  239 (309)
T ss_dssp             ------------CEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH
T ss_pred             ------------CEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch
Confidence                        4677777766543322    123478999999999999899999999999999999999999998765


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      .......+..   ..+.                                            .......++.++.+||.+|
T Consensus       240 ~~~~~~~~~~---~~~~--------------------------------------------~~~~~~~~~~~l~~li~~~  272 (309)
T 2h34_A          240 LSVMGAHINQ---AIPR--------------------------------------------PSTVRPGIPVAFDAVIARG  272 (309)
T ss_dssp             HHHHHHHHHS---CCCC--------------------------------------------GGGTSTTCCTHHHHHHHHH
T ss_pred             HHHHHHHhcc---CCCC--------------------------------------------ccccCCCCCHHHHHHHHHh
Confidence            4322211111   1000                                            0111234577899999999


Q ss_pred             cccCCCCCC-CHHHHhc
Q 013941          403 LRYDPAERL-KAREALR  418 (433)
Q Consensus       403 L~~dP~~R~-ta~ell~  418 (433)
                      |+.||++|| |++++++
T Consensus       273 l~~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          273 MAKNPEDRYVTCGDLSA  289 (309)
T ss_dssp             TCSSGGGSCSSHHHHHH
T ss_pred             ccCCHHHHHHhHHHHHH
Confidence            999999999 8888874

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1e-44  Score=345.52  Aligned_cols=248  Identities=17%  Similarity=0.296  Sum_probs=200.6

Q ss_pred             CCCeEEeccccccccEEEEEEEec-------CCCcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDN-------EKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRN  160 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~-------~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~  160 (433)
                      .++|++.+.||+|+||.||+|++.       .+++.||||+++...  .....+.+|+.+++++ .|+||     +++++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~i-----v~~~~  108 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI-----INLLG  108 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTB-----CCEEE
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCE-----eeEEE
Confidence            368999999999999999999975       456789999997532  3456788999999999 77777     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcCC--------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcE
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNSY--------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENI  225 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~~--------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NI  225 (433)
                      ++...+.+++||||+ +++|.+++.....              ..+++..++.++.||+.||.|||++||+||||||+||
T Consensus       109 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NI  188 (334)
T 2pvf_A          109 ACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNV  188 (334)
T ss_dssp             EECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGE
T ss_pred             EEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceE
Confidence            999999999999999 8899999986531              2489999999999999999999999999999999999


Q ss_pred             EEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccch
Q 013941          226 LLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCD  300 (433)
Q Consensus       226 li~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~D  300 (433)
                      |++.++                           .+||+|||++......     .....+|+.|+|||++.+..++.++|
T Consensus       189 ll~~~~---------------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  241 (334)
T 2pvf_A          189 LVTENN---------------------------VMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSD  241 (334)
T ss_dssp             EECTTC---------------------------CEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHH
T ss_pred             EEcCCC---------------------------CEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHH
Confidence            997655                           4667777766543322     12235678899999999888999999


Q ss_pred             HHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcC
Q 013941          301 LWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR  379 (433)
Q Consensus       301 iwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (433)
                      ||||||++|+|++ |..||.+....+....+......                                           
T Consensus       242 i~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~-------------------------------------------  278 (334)
T 2pvf_A          242 VWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRM-------------------------------------------  278 (334)
T ss_dssp             HHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCC-------------------------------------------
T ss_pred             HHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcCCCC-------------------------------------------
Confidence            9999999999999 99999887765554443321100                                           


Q ss_pred             chhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       380 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                            .....++..+.+||.+||+.||++|||+.|++++
T Consensus       279 ------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  312 (334)
T 2pvf_A          279 ------DKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  312 (334)
T ss_dssp             ------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------CCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                  0113456789999999999999999999999864

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=4.9e-46  Score=353.55  Aligned_cols=260  Identities=25%  Similarity=0.381  Sum_probs=181.1

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHH-HHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEID-VLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~-~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|++.+.||+|+||.||+|.+..+++.||||+++...  ........|+. +++.+.|+||     +++++++...+.
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~ni-----v~~~~~~~~~~~   95 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYI-----VQFYGALFREGD   95 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTB-----CCEEEEEECSSE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcE-----eeeeeEEEeCCc
Confidence            367999999999999999999999999999999997532  23334445555 4444555555     999999999999


Q ss_pred             EEEEEccCCCCHHHHHHh---cCCCCCCHHHHHHHHHHHHHHHHHHHhC-CcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          168 ICIVFEKLGPSLYDFLRK---NSYRSFPIDLVRELGRQLLESVAFMHEL-RLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       168 ~~lv~e~~~~~L~~~l~~---~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      .++||||+.++|.+++..   .....+++..+..++.|++.||.|||++ ||+||||||+|||++.++            
T Consensus        96 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~------------  163 (327)
T 3aln_A           96 CWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSG------------  163 (327)
T ss_dssp             EEEEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTT------------
T ss_pred             eEEEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCC------------
Confidence            999999997798888763   2234799999999999999999999999 999999999999997665            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhh----hCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVI----LGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~----~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                     .+||+|||++.......  ....||+.|+|||++    .+..++.++|||||||++|+|++|..|
T Consensus       164 ---------------~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p  228 (327)
T 3aln_A          164 ---------------NIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFP  228 (327)
T ss_dssp             ---------------EEEECCCSSSCC------------------------------CCSHHHHHHHHHHHHHHHHSCCC
T ss_pred             ---------------CEEEccCCCceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCC
Confidence                           46777777665433221  224789999999998    455689999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.....  ..+.....                    +....                      ........++..+.+
T Consensus       229 f~~~~~~~--~~~~~~~~--------------------~~~~~----------------------~~~~~~~~~~~~l~~  264 (327)
T 3aln_A          229 YPKWNSVF--DQLTQVVK--------------------GDPPQ----------------------LSNSEEREFSPSFIN  264 (327)
T ss_dssp             SSCC---------CCCCC--------------------SCCCC----------------------CCCCSSCCCCHHHHH
T ss_pred             CCCcchHH--HHHHHHhc--------------------CCCCC----------------------CCCcccccCCHHHHH
Confidence            97643211  00000000                    00000                      000112345779999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||.+||+.||++|||+.|+++||||.+..
T Consensus       265 li~~~l~~dp~~Rps~~ell~hp~~~~~~  293 (327)
T 3aln_A          265 FVNLCLTKDESKRPKYKELLKHPFILMYE  293 (327)
T ss_dssp             HHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             HHHHHhhCChhhCcCHHHHHhChHHHHhH
Confidence            99999999999999999999999998643

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.6e-45  Score=345.21  Aligned_cols=245  Identities=20%  Similarity=0.285  Sum_probs=194.2

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEE----EEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELV----AIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~v----avK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      .++|++++.||+|+||.||+|++..+++.|    |+|.+...  ......+.+|+.++++++|+||     +++++++..
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~   88 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV-----CRLLGICLT   88 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTB-----CCCCEEEES
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCe-----eEEEEEEec
Confidence            368999999999999999999998888755    66666432  2345778899999999988877     999999887


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ++ .++|+|++ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.           
T Consensus        89 ~~-~~~v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~-----------  155 (327)
T 3lzb_A           89 ST-VQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQH-----------  155 (327)
T ss_dssp             SS-EEEEECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTE-----------
T ss_pred             CC-ceEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCC-----------
Confidence            65 78889998 999999998754 46999999999999999999999999999999999999987664           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEAL  317 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~p  317 (433)
                                      +||+|||++.......     ....||..|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       156 ----------------~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p  219 (327)
T 3lzb_A          156 ----------------VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP  219 (327)
T ss_dssp             ----------------EEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             ----------------EEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCC
Confidence                            5666666665432211     12356788999999999999999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.........+.....                                                 ......++.++.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~l~~  250 (327)
T 3lzb_A          220 YDGIPASEISSILEKGER-------------------------------------------------LPQPPICTIDVYM  250 (327)
T ss_dssp             TTTCCGGGHHHHHHTTCC-------------------------------------------------CCCCTTBCHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCC-------------------------------------------------CCCCccCCHHHHH
Confidence            987766554433322110                                                 0012335678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q 013941          398 LLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~  418 (433)
                      ||.+||+.||++|||+.|+++
T Consensus       251 li~~~l~~dp~~Rps~~ell~  271 (327)
T 3lzb_A          251 IMRKCWMIDADSRPKFRELII  271 (327)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHcCCChhHCcCHHHHHH
Confidence            999999999999999999986

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=4.6e-45  Score=342.42  Aligned_cols=248  Identities=24%  Similarity=0.451  Sum_probs=190.5

Q ss_pred             cCCCeEEe-ccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHH-HHhCCCCCcceeEecceecc---
Q 013941           90 LTPRYRIL-SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQR-LARHDIGGTRCVQIRNWFDY---  164 (433)
Q Consensus        90 ~~~~y~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~-l~~~~i~~~~~v~~~~~~~~---  164 (433)
                      +.++|.+. +.||+|+||.||+|.+..+++.||+|+++..    ....+|+.++.+ +.|+|+     +++++++..   
T Consensus        15 ~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~e~~~~~~~~~h~~i-----~~~~~~~~~~~~   85 (299)
T 3m2w_A           15 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHI-----VRIVDVYENLYA   85 (299)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTB-----CCEEEEEEEEET
T ss_pred             cccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc----HHHHHHHHHHHHhccCCCc-----hhHHhhhhhhcC
Confidence            34567777 7899999999999999999999999998653    346678888844 456665     999998876   


Q ss_pred             -CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          165 -RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       165 -~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                       .+.+++||||+ +++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++..+           
T Consensus        86 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~-----------  154 (299)
T 3m2w_A           86 GRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKR-----------  154 (299)
T ss_dssp             TEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSS-----------
T ss_pred             CCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCC-----------
Confidence             77899999999 88999999987656799999999999999999999999999999999999997532           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   .+..+||+|||++....                   +..++.++|||||||++|+|++|..||.+..
T Consensus       155 -------------~~~~~kl~Dfg~a~~~~-------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~  202 (299)
T 3m2w_A          155 -------------PNAILKLTDFGFAKETT-------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNH  202 (299)
T ss_dssp             -------------TTCCEEECCCTTCEECT-------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--
T ss_pred             -------------CCCcEEEeccccccccc-------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCc
Confidence                         24568999999886422                   2457889999999999999999999997654


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      .......+..                         ......                 ..........++.++.+||.+|
T Consensus       203 ~~~~~~~~~~-------------------------~~~~~~-----------------~~~~~~~~~~~~~~~~~li~~~  240 (299)
T 3m2w_A          203 GLAISPGMKT-------------------------RIRMGQ-----------------YEFPNPEWSEVSEEVKMLIRNL  240 (299)
T ss_dssp             -----CCSCC-------------------------SSCTTC-----------------CSSCHHHHTTSCHHHHHHHHHH
T ss_pred             chhhhHHHHH-------------------------HHhhcc-----------------ccCCchhcccCCHHHHHHHHHH
Confidence            3221100000                         000000                 0000111245678999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCCccccCC
Q 013941          403 LRYDPAERLKAREALRHPFFTRDVRRCGF  431 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~~~~~~~  431 (433)
                      |+.||++|||+.|+++||||++.......
T Consensus       241 l~~dP~~Rps~~e~l~hp~~~~~~~~~~~  269 (299)
T 3m2w_A          241 LKTEPTQRMTITEFMNHPWIMQSTKVPQT  269 (299)
T ss_dssp             TCSSTTTSCCHHHHHTSHHHHTGGGSCCC
T ss_pred             cccChhhCCCHHHHhcChhhcccccCCCC
Confidence            99999999999999999999987554433

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=4.8e-45  Score=338.72  Aligned_cols=245  Identities=24%  Similarity=0.371  Sum_probs=200.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .++|++.+.||+|+||.||+|.+. +++.||+|++.......+.+.+|+.+++.+.|+++     +++++++.. +..++
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~-~~~~~   84 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRL-----VRLYAVVTQ-EPIYI   84 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTB-----CCEEEEECS-SSCEE
T ss_pred             HHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCc-----ceEEEEEcC-CCcEE
Confidence            468999999999999999999965 56789999998766566788999999999988877     899988764 56899


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.||+.||+|||++||+||||||+|||++.++                  
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~------------------  146 (279)
T 1qpc_A           85 ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL------------------  146 (279)
T ss_dssp             EEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS------------------
T ss_pred             EEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCC------------------
Confidence            99999 99999999754323699999999999999999999999999999999999997554                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                               .+||+|||++.......    ....+|..|+|||++.+..++.++|||||||++|+|++ |..||.+....
T Consensus       147 ---------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~  217 (279)
T 1qpc_A          147 ---------SCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP  217 (279)
T ss_dssp             ---------CEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH
T ss_pred             ---------CEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH
Confidence                     46777777765543322    22356788999999998889999999999999999999 99999887766


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+.+....                                                 .....++.++.+||.+||+
T Consensus       218 ~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~l~~li~~~l~  248 (279)
T 1qpc_A          218 EVIQNLERGYRM-------------------------------------------------VRPDNCPEELYQLMRLCWK  248 (279)
T ss_dssp             HHHHHHHTTCCC-------------------------------------------------CCCTTCCHHHHHHHHHHTC
T ss_pred             HHHHHHhcccCC-------------------------------------------------CCcccccHHHHHHHHHHhc
Confidence            554443221100                                                 0113456789999999999


Q ss_pred             cCCCCCCCHHHHhc
Q 013941          405 YDPAERLKAREALR  418 (433)
Q Consensus       405 ~dP~~R~ta~ell~  418 (433)
                      .||++|||++++++
T Consensus       249 ~~p~~Rps~~~l~~  262 (279)
T 1qpc_A          249 ERPEDRPTFDYLRS  262 (279)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             cChhhCCCHHHHHH
Confidence            99999999999875

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=4.2e-45  Score=346.22  Aligned_cols=251  Identities=21%  Similarity=0.327  Sum_probs=204.2

Q ss_pred             CccCCCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      +...++|++.+.||+|+||.||+|++.     .+++.||||++....  .....+.+|+.+++.+.|+|+     +++++
T Consensus        21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~   95 (322)
T 1p4o_A           21 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV-----VRLLG   95 (322)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTB-----CCEEE
T ss_pred             cchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCE-----eeeEE
Confidence            344578999999999999999999876     467889999987533  334567889999999988877     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcC--------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNS--------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~--------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      ++.+.+..++||||+ +++|.+++....        ...+++..+..++.||+.||+|||++||+||||||+|||++.++
T Consensus        96 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~  175 (322)
T 1p4o_A           96 VVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDF  175 (322)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTC
T ss_pred             EEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCC
Confidence            999999999999999 889999997532        13578999999999999999999999999999999999997554


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGC  306 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~  306 (433)
                                                 .+||+|||++.......     ....||+.|+|||++.+..++.++|||||||
T Consensus       176 ---------------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  228 (322)
T 1p4o_A          176 ---------------------------TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGV  228 (322)
T ss_dssp             ---------------------------CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred             ---------------------------eEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHH
Confidence                                       57777777776433221     2236788999999999889999999999999


Q ss_pred             HHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          307 ILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       307 il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      ++|+|++ |..||.+.+..+....+....  .                                               .
T Consensus       229 il~el~~~g~~p~~~~~~~~~~~~~~~~~--~-----------------------------------------------~  259 (322)
T 1p4o_A          229 VLWEIATLAEQPYQGLSNEQVLRFVMEGG--L-----------------------------------------------L  259 (322)
T ss_dssp             HHHHHHHTSCCTTTTSCHHHHHHHHHTTC--C-----------------------------------------------C
T ss_pred             HHHHHHhcCCCccccCCHHHHHHHHHcCC--c-----------------------------------------------C
Confidence            9999999 899998876655444332210  0                                               0


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      .....++..+.+||.+||+.||++|||+.|+++|
T Consensus       260 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~  293 (322)
T 1p4o_A          260 DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  293 (322)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            0113456789999999999999999999999986

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.6e-45  Score=338.19  Aligned_cols=246  Identities=25%  Similarity=0.335  Sum_probs=198.5

Q ss_pred             CCeEEec-cccccccEEEEEEEec--CCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILS-KMGEGTFGQVVECFDN--EKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~-~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|.+.+ .||+|+||.||+|.+.  .+++.||||+++..  ....+.+.+|+.++++++|+++     +++++++ ..+
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~-~~~   82 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYI-----VRLIGVC-QAE   82 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEE-ESS
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCE-----eEEEEEe-cCC
Confidence            5688887 9999999999999854  46788999999753  3455678899999999988777     9999998 456


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++||||+ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.             
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~-------------  148 (287)
T 1u59_A           83 ALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHY-------------  148 (287)
T ss_dssp             SEEEEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTE-------------
T ss_pred             CcEEEEEeCCCCCHHHHHHhCC-ccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCC-------------
Confidence            799999999 889999997543 46999999999999999999999999999999999999987764             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                    ++|+|||++......      .....||+.|+|||++.+..++.++|||||||++|+|++ |..||
T Consensus       149 --------------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~  214 (287)
T 1u59_A          149 --------------AKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPY  214 (287)
T ss_dssp             --------------EEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------EEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCc
Confidence                          555666655433221      122356889999999998889999999999999999998 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      ......+....+.....                                                 ......++.++.+|
T Consensus       215 ~~~~~~~~~~~i~~~~~-------------------------------------------------~~~~~~~~~~l~~l  245 (287)
T 1u59_A          215 KKMKGPEVMAFIEQGKR-------------------------------------------------MECPPECPPELYAL  245 (287)
T ss_dssp             TTCCTHHHHHHHHTTCC-------------------------------------------------CCCCTTCCHHHHHH
T ss_pred             ccCCHHHHHHHHhcCCc-------------------------------------------------CCCCCCcCHHHHHH
Confidence            88776655443322100                                                 01123457799999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCC
Q 013941          399 LQGLLRYDPAERLKAREALRHP  420 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp  420 (433)
                      |.+||+.||++|||+.++++|.
T Consensus       246 i~~~l~~~p~~Rps~~~l~~~l  267 (287)
T 1u59_A          246 MSDCWIYKWEDRPDFLTVEQRM  267 (287)
T ss_dssp             HHHTTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHcCCChhhCcCHHHHHHHH
Confidence            9999999999999999999763

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.5e-44  Score=340.60  Aligned_cols=252  Identities=27%  Similarity=0.415  Sum_probs=192.2

Q ss_pred             CCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           87 GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        87 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      +....++|++.+.||+|+||.||+|.+..+++.||||++...    ......+.+|+.++++++|+|+     +++++++
T Consensus        27 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~  101 (310)
T 2wqm_A           27 GYNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNV-----IKYYASF  101 (310)
T ss_dssp             TTSSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEE
T ss_pred             ccccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEE
Confidence            334456899999999999999999999999999999998742    3445677889999999988777     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      ...+..++||||+ +++|.+++..  .....+++..++.++.||+.||.|||++||+||||||+||+++.++        
T Consensus       102 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~--------  173 (310)
T 2wqm_A          102 IEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATG--------  173 (310)
T ss_dssp             EETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS--------
T ss_pred             EcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCC--------
Confidence            9999999999999 8899999874  2234699999999999999999999999999999999999997655        


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                         .++|+|||++......   .....||..|+|||++.+..++.++|||||||++|+|++|..
T Consensus       174 -------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~  234 (310)
T 2wqm_A          174 -------------------VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQS  234 (310)
T ss_dssp             -------------------CEEECCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             -------------------CEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCC
Confidence                               4677777766543322   123478999999999999999999999999999999999999


Q ss_pred             CCCCCCh--HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          317 LFQTHEN--LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       317 pf~~~~~--~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      ||.+...  ......+...  ..+                                              ......++.+
T Consensus       235 p~~~~~~~~~~~~~~~~~~--~~~----------------------------------------------~~~~~~~~~~  266 (310)
T 2wqm_A          235 PFYGDKMNLYSLCKKIEQC--DYP----------------------------------------------PLPSDHYSEE  266 (310)
T ss_dssp             TTC---CCHHHHHHHHHTT--CSC----------------------------------------------CCCTTTSCHH
T ss_pred             CCcccchhHHHHHHHhhcc--cCC----------------------------------------------CCcccccCHH
Confidence            9975432  1111111110  000                                              0001245678


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhc
Q 013941          395 LIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +.+||.+||+.||++|||+.++++
T Consensus       267 l~~li~~~l~~dp~~Rps~~~il~  290 (310)
T 2wqm_A          267 LRQLVNMCINPDPEKRPDVTYVYD  290 (310)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHcCCChhhCCCHHHHHH
Confidence            999999999999999999999985

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=339.99  Aligned_cols=244  Identities=27%  Similarity=0.377  Sum_probs=189.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.+.||+|+||.||+|++.  ++.||||++... ...+.+.+|+.++++++|+||     +++++++.+  ..++|
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~-~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~--~~~lv   77 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQIESE-SERKAFIVELRQLSRVNHPNI-----VKLYGACLN--PVCLV   77 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEET--TEEEEEEECSST-THHHHHHHHHHHHHHCCCTTB-----CCEEEBCTT--TTEEE
T ss_pred             hHeeeeeEeecCCCceEEEEEEC--CeeEEEEEecCh-hHHHHHHHHHHHHhcCCCCCc-----CeEEEEEcC--CcEEE
Confidence            57999999999999999999864  788999998653 345678899999999988877     999998874  47999


Q ss_pred             EccC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHh---CCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          172 FEKL-GPSLYDFLRKNSY-RSFPIDLVRELGRQLLESVAFMHE---LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~---~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      |||+ +++|.+++..... ..+++..+..++.||+.||+|||+   +||+||||||+|||++.++.              
T Consensus        78 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~--------------  143 (307)
T 2eva_A           78 MEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGT--------------  143 (307)
T ss_dssp             EECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTT--------------
T ss_pred             EEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCC--------------
Confidence            9999 8999999986542 247899999999999999999999   89999999999999976542              


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  .+||+|||++...........||+.|+|||++.+..++.++|||||||++|+|++|+.||........
T Consensus       144 ------------~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~  211 (307)
T 2eva_A          144 ------------VLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAF  211 (307)
T ss_dssp             ------------EEEECCCCC------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHH
T ss_pred             ------------EEEEcccccccccccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHH
Confidence                        36888888887655544556799999999999999999999999999999999999999975432211


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ........+..+                                               .....++..+.+||.+||+.|
T Consensus       212 ~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~l~~li~~~l~~d  244 (307)
T 2eva_A          212 RIMWAVHNGTRP-----------------------------------------------PLIKNLPKPIESLMTRCWSKD  244 (307)
T ss_dssp             HHHHHHHTTCCC-----------------------------------------------CCBTTCCHHHHHHHHHHTCSS
T ss_pred             HHHHHHhcCCCC-----------------------------------------------CcccccCHHHHHHHHHHhcCC
Confidence            111000011000                                               112345678999999999999


Q ss_pred             CCCCCCHHHHhc
Q 013941          407 PAERLKAREALR  418 (433)
Q Consensus       407 P~~R~ta~ell~  418 (433)
                      |++|||++|+++
T Consensus       245 p~~Rps~~ell~  256 (307)
T 2eva_A          245 PSQRPSMEEIVK  256 (307)
T ss_dssp             GGGSCCHHHHHH
T ss_pred             hhhCcCHHHHHH
Confidence            999999999987

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=9.3e-45  Score=338.66  Aligned_cols=253  Identities=23%  Similarity=0.331  Sum_probs=191.7

Q ss_pred             ecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecce
Q 013941           85 AIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNW  161 (433)
Q Consensus        85 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~  161 (433)
                      ..++...++|++.++||+|+||+||+|++..   .||+|+++..   ....+.+.+|+.++++++|+|+     +.++++
T Consensus        17 ~~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~---~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~   88 (289)
T 3og7_A           17 DDWEIPDGQITVGQRIGSGSFGTVYKGKWHG---DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI-----LLFMGY   88 (289)
T ss_dssp             -CCBCCTTSCEEEEEEEECSSEEEEEEESSS---EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTB-----CCEEEE
T ss_pred             CCCccCccceeeeeEecCCCCeEEEEEEEcC---ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcE-----EEEEee
Confidence            3456667899999999999999999998543   4999998643   3344678889999999988877     888885


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      . ..+..++||||+ +++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++         
T Consensus        89 ~-~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~---------  157 (289)
T 3og7_A           89 S-TAPQLAIVTQWCEGSSLYHHLHASE-TKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDN---------  157 (289)
T ss_dssp             E-CSSSCEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTT---------
T ss_pred             c-cCCccEEEEEecCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCC---------
Confidence            5 456789999999 899999996543 4699999999999999999999999999999999999998765         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhh---CCCCCccchHHHHHHHHHHHH
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVIL---GLGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwSlG~il~el~  312 (433)
                                        .++|+|||++.....     ......||+.|+|||++.   +..++.++|||||||++|+|+
T Consensus       158 ------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~  219 (289)
T 3og7_A          158 ------------------TVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELM  219 (289)
T ss_dssp             ------------------EEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHH
T ss_pred             ------------------CEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHH
Confidence                              456666666653321     112357899999999997   556889999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      +|..||.+....+.+..+.......+.                                            .......++
T Consensus       220 ~g~~p~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~  255 (289)
T 3og7_A          220 TGQLPYSNINNRDQIIEMVGRGSLSPD--------------------------------------------LSKVRSNCP  255 (289)
T ss_dssp             HSSCTTSSCCCHHHHHHHHHHTSCCCC--------------------------------------------TTSSCTTSC
T ss_pred             HCCCCccccchHHHHHHHhcccccCcc--------------------------------------------hhhccccCC
Confidence            999999887665544433322111000                                            001123457


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      ..+.+||.+||+.||++|||+.|+++
T Consensus       256 ~~l~~li~~~l~~~p~~Rps~~ell~  281 (289)
T 3og7_A          256 KRMKRLMAECLKKKRDERPSFPRILA  281 (289)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHccCChhhCCCHHHHHH
Confidence            78999999999999999999999985

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=1.1e-44  Score=345.19  Aligned_cols=248  Identities=21%  Similarity=0.301  Sum_probs=198.8

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCc-----EEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEeccee
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKE-----LVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~-----~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~  162 (433)
                      .++|++.+.||+|+||.||+|.+..+++     .||+|++....  ...+.+.+|+.+++.+ .|+||     +++++++
T Consensus        45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i-----v~~~~~~  119 (333)
T 2i1m_A           45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENI-----VNLLGAC  119 (333)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEE
T ss_pred             HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCe-----eeEEEEE
Confidence            4679999999999999999999877654     79999987543  3456788999999999 78777     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcC------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNS------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                      .+.+.+++||||+ +++|.+++....            ...+++..+..++.||+.||+|||++||+||||||+|||++.
T Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~  199 (333)
T 2i1m_A          120 THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTN  199 (333)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEG
T ss_pred             ecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECC
Confidence            9999999999999 889999997532            235899999999999999999999999999999999999987


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHH
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSV  304 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  304 (433)
                      ++.++|+|||                           ++......     .....||+.|+|||++.+..++.++|||||
T Consensus       200 ~~~~kl~Dfg---------------------------~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  252 (333)
T 2i1m_A          200 GHVAKIGDFG---------------------------LARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSY  252 (333)
T ss_dssp             GGEEEBCCCG---------------------------GGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHH
T ss_pred             CCeEEECccc---------------------------cccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHH
Confidence            7755555554                           44322211     122467889999999999899999999999


Q ss_pred             HHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhh
Q 013941          305 GCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL  383 (433)
Q Consensus       305 G~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (433)
                      ||++|+|++ |..||.+.........+.......                                              
T Consensus       253 G~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~----------------------------------------------  286 (333)
T 2i1m_A          253 GILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQM----------------------------------------------  286 (333)
T ss_dssp             HHHHHHHTTTSCCSSTTCCSSHHHHHHHHHTCCC----------------------------------------------
T ss_pred             HHHHHHHHcCCCCCCcccchhHHHHHHHhcCCCC----------------------------------------------
Confidence            999999998 999998765444333322211000                                              


Q ss_pred             hhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       384 ~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                        ......+..+.+||.+||+.||++|||+.|+++
T Consensus       287 --~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  319 (333)
T 2i1m_A          287 --AQPAFAPKNIYSIMQACWALEPTHRPTFQQICS  319 (333)
T ss_dssp             --CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --CCCCCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence              011234678999999999999999999999986

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=5.3e-45  Score=361.22  Aligned_cols=252  Identities=27%  Similarity=0.365  Sum_probs=203.0

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      .++|++.++||+|+||.||+|.+.. +..||||+++......+.+.+|+.++++++|+|+     +++++++.. +..|+
T Consensus       183 ~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~~~~~-~~~~i  255 (452)
T 1fmk_A          183 RESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL-----VQLYAVVSE-EPIYI  255 (452)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTB-----CCEEEEECS-SSCEE
T ss_pred             hhHceeeeeecCCCCeEEEEEEECC-CceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCE-----eeEEEEEcC-CceEE
Confidence            4679999999999999999999865 4569999998665556788999999999998877     999998876 67899


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.||+.||+|||++||+||||||+|||++.++                  
T Consensus       256 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~------------------  317 (452)
T 1fmk_A          256 VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENL------------------  317 (452)
T ss_dssp             EECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG------------------
T ss_pred             EehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCC------------------
Confidence            99999 89999999754334699999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                               .+||+|||++.......    ....+|..|+|||++.+..++.++|||||||++|||++ |..||.+....
T Consensus       318 ---------~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~  388 (452)
T 1fmk_A          318 ---------VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR  388 (452)
T ss_dssp             ---------CEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH
T ss_pred             ---------CEEECCCccceecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH
Confidence                     46777777765433211    22356788999999998899999999999999999999 99999987776


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+.+...                                                 ......++..+.+||.+||+
T Consensus       389 ~~~~~i~~~~~-------------------------------------------------~~~~~~~~~~l~~li~~cl~  419 (452)
T 1fmk_A          389 EVLDQVERGYR-------------------------------------------------MPCPPECPESLHDLMCQCWR  419 (452)
T ss_dssp             HHHHHHHTTCC-------------------------------------------------CCCCTTSCHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCC-------------------------------------------------CCCCCCCCHHHHHHHHHHcc
Confidence            65554432110                                                 00113456789999999999


Q ss_pred             cCCCCCCCHHHHhc--CCCCCCC
Q 013941          405 YDPAERLKAREALR--HPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~ta~ell~--hp~f~~~  425 (433)
                      .||++|||++++++  ..+|...
T Consensus       420 ~dP~~Rpt~~~l~~~L~~~~~~~  442 (452)
T 1fmk_A          420 KEPEERPTFEYLQAFLEDYFTST  442 (452)
T ss_dssp             SSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             CChhhCcCHHHHHHHHHHHhccC
Confidence            99999999999986  4666654

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.6e-44  Score=335.62  Aligned_cols=245  Identities=24%  Similarity=0.322  Sum_probs=195.7

Q ss_pred             CCeEEeccccccccEEEEEEEecC---CCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE---KKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||.||+|++..   ++..||+|++...  ....+.+.+|+.+++.++|+|+     +++++++.++ 
T Consensus        12 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~-   85 (281)
T 3cc6_A           12 EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHI-----VKLIGIIEEE-   85 (281)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTB-----CCEEEEECSS-
T ss_pred             cceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCc-----ceEEEEEcCC-
Confidence            579999999999999999998654   3456999998753  2345678899999999988877     9999988754 


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++||||+ +++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.             
T Consensus        86 ~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~-------------  151 (281)
T 3cc6_A           86 PTWIIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPEC-------------  151 (281)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTE-------------
T ss_pred             CCEEEEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCc-------------
Confidence            568999999 899999998654 36999999999999999999999999999999999999987765             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQT  320 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~  320 (433)
                                    +||+|||++......    .....+|..|+|||++.+..++.++|||||||++|+|++ |..||..
T Consensus       152 --------------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~  217 (281)
T 3cc6_A          152 --------------VKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFW  217 (281)
T ss_dssp             --------------EEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred             --------------EEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCccc
Confidence                          555555555433221    122356888999999998899999999999999999998 9999987


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ....+....+......                                                 .....+++.+.+||.
T Consensus       218 ~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~l~~li~  248 (281)
T 3cc6_A          218 LENKDVIGVLEKGDRL-------------------------------------------------PKPDLCPPVLYTLMT  248 (281)
T ss_dssp             SCGGGHHHHHHHTCCC-------------------------------------------------CCCTTCCHHHHHHHH
T ss_pred             CChHHHHHHHhcCCCC-------------------------------------------------CCCCCCCHHHHHHHH
Confidence            6655444333221100                                                 011234678999999


Q ss_pred             HhcccCCCCCCCHHHHhcC
Q 013941          401 GLLRYDPAERLKAREALRH  419 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~h  419 (433)
                      +||+.||++|||+.|++++
T Consensus       249 ~~l~~~p~~Rps~~ell~~  267 (281)
T 3cc6_A          249 RCWDYDPSDRPRFTELVCS  267 (281)
T ss_dssp             HHTCSSGGGSCCHHHHHHH
T ss_pred             HHccCCchhCcCHHHHHHH
Confidence            9999999999999999864

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=5.3e-45  Score=346.40  Aligned_cols=247  Identities=21%  Similarity=0.303  Sum_probs=198.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEE--EEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELV--AIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~v--avK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||.||+|++..++..+  |+|.+...  ....+.+.+|+.+++++ .|+++     +++++++.+.+
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~i-----v~~~~~~~~~~   99 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI-----INLLGACEHRG   99 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTB-----CCEEEEEEETT
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCch-----hhhceeeeeCC
Confidence            57999999999999999999999888865  99988642  23345678899999999 67766     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      ..|+||||+ +++|.+++....              ...+++..++.++.||+.||.|||++||+||||||+|||++.++
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~  179 (327)
T 1fvr_A          100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  179 (327)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG
T ss_pred             ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCC
Confidence            999999999 899999997643              23699999999999999999999999999999999999997655


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCCCCCccchHHHHHHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  309 (433)
                                                 .+||+|||++.....  ......+|+.|+|||++.+..++.++|||||||++|
T Consensus       180 ---------------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  232 (327)
T 1fvr_A          180 ---------------------------VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLW  232 (327)
T ss_dssp             ---------------------------CEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHH
T ss_pred             ---------------------------eEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHH
Confidence                                       467777776653222  122246688999999999888999999999999999


Q ss_pred             HHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          310 ELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       310 el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      +|++ |..||.+.+..+....+....                       .                          ....
T Consensus       233 ellt~g~~pf~~~~~~~~~~~~~~~~-----------------------~--------------------------~~~~  263 (327)
T 1fvr_A          233 EIVSLGGTPYCGMTCAELYEKLPQGY-----------------------R--------------------------LEKP  263 (327)
T ss_dssp             HHHTTSCCTTTTCCHHHHHHHGGGTC-----------------------C--------------------------CCCC
T ss_pred             HHHcCCCCCCCCCcHHHHHHHhhcCC-----------------------C--------------------------CCCC
Confidence            9998 999998876655433321110                       0                          0111


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ..++..+.+||.+||+.||++|||++|+++|
T Consensus       264 ~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  294 (327)
T 1fvr_A          264 LNCDDEVYDLMRQCWREKPYERPSFAQILVS  294 (327)
T ss_dssp             TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            2456789999999999999999999999875

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-44  Score=342.44  Aligned_cols=247  Identities=21%  Similarity=0.313  Sum_probs=196.6

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCC----cEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKK----ELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..+|++.+.||+|+||.||+|.+..++    ..||||+++..  ......+.+|+.+++++.|++|     +++++++.+
T Consensus        43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~  117 (333)
T 1mqb_A           43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNI-----IRLEGVISK  117 (333)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEECS
T ss_pred             hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCC-----CcEEEEEec
Confidence            468999999999999999999876553    46999998753  2344567889999999988877     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      .+..++||||+ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++            
T Consensus       118 ~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~------------  184 (333)
T 1mqb_A          118 YKPMMIITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNL------------  184 (333)
T ss_dssp             SSSEEEEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC------------
T ss_pred             CCCcEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCC------------
Confidence            99999999999 889999998653 4699999999999999999999999999999999999997655            


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEA  316 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~  316 (433)
                                     .+||+|||++.......      ....+|..|+|||++.+..++.++|||||||++|+|++ |..
T Consensus       185 ---------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~  249 (333)
T 1mqb_A          185 ---------------VCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGER  249 (333)
T ss_dssp             ---------------CEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ---------------cEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCC
Confidence                           46677777665433221      11345788999999999999999999999999999999 999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+....+....+..... +                                                .....++..+.
T Consensus       250 pf~~~~~~~~~~~~~~~~~-~------------------------------------------------~~~~~~~~~l~  280 (333)
T 1mqb_A          250 PYWELSNHEVMKAINDGFR-L------------------------------------------------PTPMDCPSAIY  280 (333)
T ss_dssp             TTTTCCHHHHHHHHHTTCC-C------------------------------------------------CCCTTCBHHHH
T ss_pred             CcccCCHHHHHHHHHCCCc-C------------------------------------------------CCcccCCHHHH
Confidence            9988776555444332110 0                                                01124567899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcC
Q 013941          397 DLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      +||.+||+.||++|||+.+++++
T Consensus       281 ~li~~~l~~~p~~Rps~~~l~~~  303 (333)
T 1mqb_A          281 QLMMQCWQQERARRPKFADIVSI  303 (333)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             HHHHHHcCCChhhCcCHHHHHHH
Confidence            99999999999999999998764

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=1.2e-44  Score=342.06  Aligned_cols=249  Identities=22%  Similarity=0.314  Sum_probs=196.7

Q ss_pred             CCCeEEeccccccccEEEEEEEe-----cCCCcEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEeccee
Q 013941           91 TPRYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~-----~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~  162 (433)
                      .++|++.+.||+|+||.||+|++     ..+++.||||+++...  .....+.+|+.++.++ +|+++     +++++++
T Consensus        26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~i-----v~~~~~~  100 (316)
T 2xir_A           26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNV-----VNLLGAC  100 (316)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEE
T ss_pred             hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCe-----eeEEEEE
Confidence            46899999999999999999984     4577899999997533  3345678999999999 45666     9999988


Q ss_pred             ccC-CeEEEEEccC-CCCHHHHHHhcCC--------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEE
Q 013941          163 DYR-NHICIVFEKL-GPSLYDFLRKNSY--------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENIL  226 (433)
Q Consensus       163 ~~~-~~~~lv~e~~-~~~L~~~l~~~~~--------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIl  226 (433)
                      ... +.+++||||+ +++|.+++.....              ..+++..++.++.||+.||.|||++||+||||||+|||
T Consensus       101 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil  180 (316)
T 2xir_A          101 TKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL  180 (316)
T ss_dssp             CCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             ecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEE
Confidence            764 4699999999 8899999987542              12899999999999999999999999999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchH
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDL  301 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di  301 (433)
                      ++.++.                           +||+|||++.......     ....||+.|+|||++.+..++.++||
T Consensus       181 ~~~~~~---------------------------~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di  233 (316)
T 2xir_A          181 LSEKNV---------------------------VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDV  233 (316)
T ss_dssp             ECGGGC---------------------------EEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHH
T ss_pred             ECCCCC---------------------------EEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHH
Confidence            977664                           5555555554332211     22467889999999999899999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCc
Q 013941          302 WSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL  380 (433)
Q Consensus       302 wSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (433)
                      |||||++|+|++ |..||.+................                                            
T Consensus       234 ~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~--------------------------------------------  269 (316)
T 2xir_A          234 WSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTR--------------------------------------------  269 (316)
T ss_dssp             HHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCC--------------------------------------------
T ss_pred             HHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCcc--------------------------------------------
Confidence            999999999998 99999876543322221111000                                            


Q ss_pred             hhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       381 ~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                          .......+..+.++|.+||+.||++|||+.|+++|
T Consensus       270 ----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  304 (316)
T 2xir_A          270 ----MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  304 (316)
T ss_dssp             ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                00112346789999999999999999999999976

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=7.6e-45  Score=335.59  Aligned_cols=243  Identities=15%  Similarity=0.153  Sum_probs=196.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC--C
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR--N  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~--~  166 (433)
                      ++|++.+.||+|+||.||+|++.  ++.||+|++....   ...+.+.+|+.++++++|+||     +++++++.+.  +
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~   82 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNV-----LPVLGACQSPPAP   82 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEET--TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTE-----ECEEEEECTTTSS
T ss_pred             HHhHHHHHhcCCCcceEEEEEEC--CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCch-----hheEEEEccCCCC
Confidence            57999999999999999999974  8889999997532   344568889999988887766     9999999876  7


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      ..++||||+ +++|.+++.......+++..++.++.||+.||+|||++|  |+||||||+|||++.++.           
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~-----------  151 (271)
T 3kmu_A           83 HPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMT-----------  151 (271)
T ss_dssp             SCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSC-----------
T ss_pred             CeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcc-----------
Confidence            899999999 889999998766556999999999999999999999999  999999999999976654           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCC---ccchHHHHHHHHHHHHhCCCCCCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~---~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                      ++|+|||++....  .....||+.|+|||++.+..++   .++|||||||++|+|++|..||.+
T Consensus       152 ----------------~~l~~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  213 (271)
T 3kmu_A          152 ----------------ARISMADVKFSFQ--SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFAD  213 (271)
T ss_dssp             ----------------EEEEGGGSCCTTS--CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTT
T ss_pred             ----------------eeEEeccceeeec--ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence                            4555444433221  1234789999999999886544   489999999999999999999988


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+.......+......                                                ......++.++.+||.
T Consensus       214 ~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~li~  245 (271)
T 3kmu_A          214 LSNMEIGMKVALEGLR------------------------------------------------PTIPPGISPHVSKLMK  245 (271)
T ss_dssp             SCHHHHHHHHHHSCCC------------------------------------------------CCCCTTCCHHHHHHHH
T ss_pred             cChHHHHHHHHhcCCC------------------------------------------------CCCCCCCCHHHHHHHH
Confidence            7766554433221100                                                0112345778999999


Q ss_pred             HhcccCCCCCCCHHHHhc
Q 013941          401 GLLRYDPAERLKAREALR  418 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~  418 (433)
                      +||+.||++|||++|+++
T Consensus       246 ~~l~~~p~~Rps~~~il~  263 (271)
T 3kmu_A          246 ICMNEDPAKRPKFDMIVP  263 (271)
T ss_dssp             HHTCSSGGGSCCHHHHHH
T ss_pred             HHcCCChhhCcCHHHHHH
Confidence            999999999999999985

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-45  Score=349.82  Aligned_cols=266  Identities=17%  Similarity=0.146  Sum_probs=195.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCC--------CcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCC----------C
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEK--------KELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG----------G  152 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~--------~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~----------~  152 (433)
                      .++|++.+.||+|+||.||+|++..+        ++.||||++...    +.+.+|+.+++++.|+|+.          .
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  116 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL  116 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence            46899999999999999999999874        889999998754    3577899999999887662          2


Q ss_pred             cceeEecceecc-CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          153 TRCVQIRNWFDY-RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       153 ~~~v~~~~~~~~-~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      .+++.+++++.. ++..|+||||++++|.+++.......+++..++.++.||+.||+|||++||+||||||+|||++.++
T Consensus       117 ~~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~~  196 (352)
T 2jii_A          117 LAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPED  196 (352)
T ss_dssp             CSCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETTE
T ss_pred             cCccchhhccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCCC
Confidence            334456676665 7889999999999999999876334799999999999999999999999999999999999998766


Q ss_pred             --cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHH
Q 013941          232 --YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       232 --~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  309 (433)
                        .++|+|||++.........                 ............||+.|+|||++.+..++.++|||||||++|
T Consensus       197 ~~~~kl~Dfg~a~~~~~~~~~-----------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~  259 (352)
T 2jii_A          197 QSQVTLAGYGFAFRYCPSGKH-----------------VAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCML  259 (352)
T ss_dssp             EEEEEECCGGGCBCSSGGGCC-----------------CCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CceEEEecCcceeeccCCCcc-----------------ccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHH
Confidence              4444444443322111000                 000001112347999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCC-hHHHHHH-HHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhc
Q 013941          310 ELCSGEALFQTHE-NLEHLAM-MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH  387 (433)
Q Consensus       310 el~~g~~pf~~~~-~~~~~~~-i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (433)
                      +|++|..||.... ....+.. ........+..                                         ......
T Consensus       260 el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~  298 (352)
T 2jii_A          260 KWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPF-----------------------------------------VGPCGH  298 (352)
T ss_dssp             HHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCE-----------------------------------------ECTTSC
T ss_pred             HHHhCCCCcccCCcCHHHHHHHHHhccCChhhh-----------------------------------------hhhccc
Confidence            9999999998653 2222222 22111111100                                         000001


Q ss_pred             cCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          388 VDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       388 ~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      ...++.++.+||.+||+.||++|||++++++
T Consensus       299 ~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          299 WIRPSETLQKYLKVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             EECCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHhCChhhCCCHHHHHH
Confidence            1245779999999999999999999999875

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=2.5e-44  Score=337.71  Aligned_cols=261  Identities=23%  Similarity=0.366  Sum_probs=197.6

Q ss_pred             CCCeEEeccccccccEEEEEEE----ecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECF----DNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~----~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ..+|++++.||+|+||.||+|+    +..+++.||+|++....  ...+.+.+|+.+++.++|+|+     +++++++..
T Consensus        20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~   94 (302)
T 4e5w_A           20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENI-----VKYKGICTE   94 (302)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTB-----CCEEEEEEC
T ss_pred             hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCe-----eeeeeEEec
Confidence            4569999999999999999998    67789999999987433  334678899999999988877     999999877


Q ss_pred             C--CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          165 R--NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       165 ~--~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      .  +.+++||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++.         
T Consensus        95 ~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~---------  164 (302)
T 4e5w_A           95 DGGNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQ---------  164 (302)
T ss_dssp             ---CCEEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTE---------
T ss_pred             CCCceEEEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCC---------
Confidence            6  6799999999 889999996554 36999999999999999999999999999999999999987664         


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                        ++|+|||++......      .....||..|+|||++.+..++.++|||||||++|+|++|.
T Consensus       165 ------------------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  226 (302)
T 4e5w_A          165 ------------------VKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYC  226 (302)
T ss_dssp             ------------------EEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTT
T ss_pred             ------------------EEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHcc
Confidence                              566666666543322      12346788899999999988999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .|+....     ..+....++........   ........+                          ........++.++
T Consensus       227 ~p~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~--------------------------~~~~~~~~~~~~l  272 (302)
T 4e5w_A          227 DSDSSPM-----ALFLKMIGPTHGQMTVT---RLVNTLKEG--------------------------KRLPCPPNCPDEV  272 (302)
T ss_dssp             CGGGSHH-----HHHHHHHCSCCGGGHHH---HHHHHHHTT--------------------------CCCCCCTTCCHHH
T ss_pred             CCCcchh-----hHHhhccCCcccccCHH---HHHHHHhcc--------------------------CCCCCCCCCCHHH
Confidence            9874321     11222222221111000   000000000                          0111234567899


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q 013941          396 IDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||.+||+.||++|||+.|+++
T Consensus       273 ~~li~~~l~~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          273 YQLMRKCWEFQPSNRTSFQNLIE  295 (302)
T ss_dssp             HHHHHHTTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHH
Confidence            99999999999999999999985

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=2.3e-44  Score=336.33  Aligned_cols=243  Identities=24%  Similarity=0.336  Sum_probs=195.8

Q ss_pred             CCeEEec-cccccccEEEEEEE--ecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILS-KMGEGTFGQVVECF--DNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~-~lg~G~~g~V~~~~--~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ++|++.+ .||+|+||.||+|.  +..+++.||||+++...   ...+.+.+|+.+++.+.|+++     +++++++ ..
T Consensus        16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~-~~   89 (291)
T 1xbb_A           16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI-----VRMIGIC-EA   89 (291)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTB-----CCEEEEE-ES
T ss_pred             hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCE-----EEEEEEE-CC
Confidence            5799998 99999999999995  45678899999997532   235678899999999988777     9999988 56


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +..++||||+ +++|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++.            
T Consensus        90 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~------------  155 (291)
T 1xbb_A           90 ESWMLVMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHY------------  155 (291)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTE------------
T ss_pred             CCcEEEEEeCCCCCHHHHHHhCc--CCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCc------------
Confidence            7789999999 899999998764  6999999999999999999999999999999999999987764            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEAL  317 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~p  317 (433)
                                     +||+|||++.......      ....+|..|+|||++.+..++.++|||||||++|+|++ |..|
T Consensus       156 ---------------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p  220 (291)
T 1xbb_A          156 ---------------AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKP  220 (291)
T ss_dssp             ---------------EEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             ---------------EEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCC
Confidence                           5566666554432221      11346788999999998889999999999999999999 9999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+..+....+....  .                                               ......++..+.+
T Consensus       221 ~~~~~~~~~~~~~~~~~--~-----------------------------------------------~~~~~~~~~~l~~  251 (291)
T 1xbb_A          221 YRGMKGSEVTAMLEKGE--R-----------------------------------------------MGCPAGCPREMYD  251 (291)
T ss_dssp             STTCCHHHHHHHHHTTC--C-----------------------------------------------CCCCTTCCHHHHH
T ss_pred             CCCCCHHHHHHHHHcCC--C-----------------------------------------------CCCCCCCCHHHHH
Confidence            98877655444332210  0                                               0012345778999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q 013941          398 LLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~  418 (433)
                      +|.+||+.||++|||+.++++
T Consensus       252 li~~~l~~dp~~Rps~~~l~~  272 (291)
T 1xbb_A          252 LMNLCWTYDVENRPGFAAVEL  272 (291)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHH
T ss_pred             HHHHHcCCChhhCcCHHHHHH
Confidence            999999999999999999875

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.2e-45  Score=346.54  Aligned_cols=260  Identities=25%  Similarity=0.333  Sum_probs=177.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHH-hCCCCCcceeEeccee-------
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWF-------  162 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~-------  162 (433)
                      .+|++.+.||+|+||.||+|++..+++.||||++.... .....+.+|+.++.++. |+||     +++++++       
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~i-----v~~~~~~~~~~~~~  102 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNI-----VQFCSAASIGKEES  102 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTB-----CCEEEEEEECTTTS
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCCh-----hhcccccccccccc
Confidence            47999999999999999999999999999999885433 34566788999999996 7777     8888887       


Q ss_pred             -ccCCeEEEEEccCCCCHHHHHHh-cCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccCc
Q 013941          163 -DYRNHICIVFEKLGPSLYDFLRK-NSYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       163 -~~~~~~~lv~e~~~~~L~~~l~~-~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                       .....+++||||++|+|.+++.. .....+++..++.++.||+.||+|||++|  |+||||||+|||++.++.++|+||
T Consensus       103 ~~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Df  182 (337)
T 3ll6_A          103 DTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDF  182 (337)
T ss_dssp             TTSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred             ccCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecC
Confidence             44567999999998899999875 22246999999999999999999999999  999999999999987665555444


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhh---hCCCCCccchHHHHHHHHHHHHhCC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVI---LGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                      |++.............            .............||+.|+|||++   .+..++.++|||||||++|+|++|.
T Consensus       183 g~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~  250 (337)
T 3ll6_A          183 GSATTISHYPDYSWSA------------QRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQ  250 (337)
T ss_dssp             TTCBCCSSCC-------------------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSS
T ss_pred             ccceeccccCcccccc------------cccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCC
Confidence            4433222111000000            000000011234689999999998   4567899999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||...........   .. .                                                .......+..+
T Consensus       251 ~p~~~~~~~~~~~~---~~-~------------------------------------------------~~~~~~~~~~~  278 (337)
T 3ll6_A          251 HPFEDGAKLRIVNG---KY-S------------------------------------------------IPPHDTQYTVF  278 (337)
T ss_dssp             CCC---------------C-C------------------------------------------------CCTTCCSSGGG
T ss_pred             CCCcchhHHHhhcC---cc-c------------------------------------------------CCcccccchHH
Confidence            99975433221110   00 0                                                00112335578


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHP  420 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp  420 (433)
                      .+||.+||+.||++|||+.|+++|-
T Consensus       279 ~~li~~~l~~~p~~Rps~~e~l~~l  303 (337)
T 3ll6_A          279 HSLIRAMLQVNPEERLSIAEVVHQL  303 (337)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHccCChhhCcCHHHHHHHH
Confidence            8999999999999999999999874

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.9e-45  Score=346.86  Aligned_cols=256  Identities=20%  Similarity=0.274  Sum_probs=189.2

Q ss_pred             eeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH--HhCCCCCcceeEecc
Q 013941           83 VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL--ARHDIGGTRCVQIRN  160 (433)
Q Consensus        83 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l--~~~~i~~~~~v~~~~  160 (433)
                      +...+..+.++|++.+.||+|+||.||+|++.  ++.||||++.....  ....+|.+++..+  .|+||     +++++
T Consensus        28 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~--~~~~~e~~~~~~~~~~h~~i-----~~~~~   98 (337)
T 3mdy_A           28 PLLVQRTIAKQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTTEE--ASWFRETEIYQTVLMRHENI-----LGFIA   98 (337)
T ss_dssp             CHHHHTTHHHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGGGH--HHHHHHHHHHTSTTCCCTTB-----CCEEE
T ss_pred             CcccccccccceEEEeEeecCCCeEEEEEEEC--CceEEEEEEecccc--chhhhHHHHHHHHhhcCCCe-----eeEEE
Confidence            34456667789999999999999999999864  88999999865443  3344455555443  55555     99999


Q ss_pred             eeccC----CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC--------CcEecCCCCCcEEE
Q 013941          161 WFDYR----NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL--------RLIHTDLKPENILL  227 (433)
Q Consensus       161 ~~~~~----~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~--------~ivHrDikp~NIli  227 (433)
                      ++...    +.+++||||+ +++|.+++...   .+++..++.++.||+.||+|||++        ||+||||||+|||+
T Consensus        99 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill  175 (337)
T 3mdy_A           99 ADIKGTGSWTQLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILV  175 (337)
T ss_dssp             EEEESCGGGCEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEE
T ss_pred             EEccCCCCCCceEEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEE
Confidence            88776    7899999999 88999999765   599999999999999999999999        99999999999999


Q ss_pred             eeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-------cccccCCcccchhhhhCCCCCcc--
Q 013941          228 VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-------SYVVSTRHYRAPEVILGLGWNYP--  298 (433)
Q Consensus       228 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-------~~~~gt~~y~aPE~~~~~~~~~~--  298 (433)
                      +.++                           .+||+|||++.......       ....||+.|+|||++.+..++..  
T Consensus       176 ~~~~---------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  228 (337)
T 3mdy_A          176 KKNG---------------------------TCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQ  228 (337)
T ss_dssp             CTTS---------------------------CEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTH
T ss_pred             CCCC---------------------------CEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCcccc
Confidence            7655                           46777777664432211       23579999999999988766654  


Q ss_pred             ----chHHHHHHHHHHHHhC----------CCCCCCCCh----HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCcccc
Q 013941          299 ----CDLWSVGCILVELCSG----------EALFQTHEN----LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLD  360 (433)
Q Consensus       299 ----~DiwSlG~il~el~~g----------~~pf~~~~~----~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  360 (433)
                          +|||||||++|||++|          ..||.....    ............                     ....
T Consensus       229 ~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~  287 (337)
T 3mdy_A          229 SYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKK---------------------LRPS  287 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSC---------------------CCCC
T ss_pred             CccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhc---------------------cCcc
Confidence                9999999999999999          556543211    111111100000                     0000


Q ss_pred             CCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          361 WPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ++                     .......++.++.+||.+||+.||++|||+.|+++|
T Consensus       288 ~~---------------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          288 FP---------------------NRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             CC---------------------GGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             cc---------------------ccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence            00                     000112346789999999999999999999999875

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=4.2e-45  Score=338.97  Aligned_cols=243  Identities=21%  Similarity=0.327  Sum_probs=190.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-CCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-RNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-~~~~~l  170 (433)
                      ++|++.+.||+|+||.||+|.+  +++.||||+++... ..+.+.+|+.++++++|+++     +++++++.. .+..++
T Consensus        21 ~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~~l   92 (278)
T 1byg_A           21 KELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSNL-----VQLLGVIVEEKGGLYI   92 (278)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC---HHHHHTHHHHTTCCCTTB-----CCEEEEECCC--CCEE
T ss_pred             hhceEEeEEecCCCceEEEEEE--cCCEEEEEEecchh-HHHHHHHHHHHHHhCCCCCE-----eeEEEEEEcCCCceEE
Confidence            5799999999999999999986  48899999987543 45678899999999988777     999998654 457999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +++|.+++.......+++..+..++.||+.||+|||++||+||||||+||+++.++                  
T Consensus        93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~------------------  154 (278)
T 1byg_A           93 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN------------------  154 (278)
T ss_dssp             EECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTS------------------
T ss_pred             EEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCC------------------
Confidence            99999 78999999865433489999999999999999999999999999999999996544                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLA  328 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~  328 (433)
                               .++|+|||++...........+|..|+|||++.+..++.++|||||||++|+|++ |..||......+...
T Consensus       155 ---------~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~  225 (278)
T 1byg_A          155 ---------VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVP  225 (278)
T ss_dssp             ---------CEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHH
T ss_pred             ---------cEEEeeccccccccccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence                     5788888877665544445578899999999998899999999999999999998 999998765544333


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+....                       .                          ......+++.+.++|.+||+.||+
T Consensus       226 ~~~~~~-----------------------~--------------------------~~~~~~~~~~l~~li~~~l~~~p~  256 (278)
T 1byg_A          226 RVEKGY-----------------------K--------------------------MDAPDGCPPAVYEVMKNCWHLDAA  256 (278)
T ss_dssp             HHTTTC-----------------------C--------------------------CCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             HHhcCC-----------------------C--------------------------CCCcccCCHHHHHHHHHHhcCChh
Confidence            221100                       0                          011234577899999999999999


Q ss_pred             CCCCHHHHhc
Q 013941          409 ERLKAREALR  418 (433)
Q Consensus       409 ~R~ta~ell~  418 (433)
                      +|||+.|+++
T Consensus       257 ~Rps~~~l~~  266 (278)
T 1byg_A          257 MRPSFLQLRE  266 (278)
T ss_dssp             GSCCHHHHHH
T ss_pred             hCCCHHHHHH
Confidence            9999999875

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=9.2e-46  Score=362.46  Aligned_cols=252  Identities=17%  Similarity=0.186  Sum_probs=191.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCC-----------CCCccee
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHD-----------IGGTRCV  156 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~-----------i~~~~~v  156 (433)
                      ..|.+.+.||+|+||+||+|++..+|+.||||+++...    ...+.+.+|+.+++.+.|..           +....++
T Consensus        78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  157 (413)
T 3dzo_A           78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV  157 (413)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred             eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence            35889999999999999999999999999999987322    23467888999988887621           1111111


Q ss_pred             Ee------cceecc-----CCeEEEEEccCCCCHHHHHH-----hcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCC
Q 013941          157 QI------RNWFDY-----RNHICIVFEKLGPSLYDFLR-----KNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDL  220 (433)
Q Consensus       157 ~~------~~~~~~-----~~~~~lv~e~~~~~L~~~l~-----~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDi  220 (433)
                      .+      ..++..     ...++++|++++++|.+++.     ......+++..+..++.||+.||+|||++|||||||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDi  237 (413)
T 3dzo_A          158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYL  237 (413)
T ss_dssp             ECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCC
T ss_pred             ccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCc
Confidence            11      111111     23578999999999999985     222235788899999999999999999999999999


Q ss_pred             CCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhh----------
Q 013941          221 KPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVI----------  290 (433)
Q Consensus       221 kp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~----------  290 (433)
                      ||+|||++.++                           .+||+|||++..........+| +.|+|||++          
T Consensus       238 Kp~NILl~~~~---------------------------~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~  289 (413)
T 3dzo_A          238 RPVDIVLDQRG---------------------------GVFLTGFEHLVRDGASAVSPIG-RGFAPPETTAERMLPFGQH  289 (413)
T ss_dssp             CGGGEEECTTC---------------------------CEEECCGGGCEETTEEECCCCC-TTTCCHHHHHHHTSTTGGG
T ss_pred             ccceEEEecCC---------------------------eEEEEeccceeecCCccccCCC-CceeCchhhhccccccccc
Confidence            99999997655                           4677777777655544455678 999999999          


Q ss_pred             hCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhh
Q 013941          291 LGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDS  370 (433)
Q Consensus       291 ~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (433)
                      .+..++.++|||||||++|||++|+.||...+.....                                           
T Consensus       290 ~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~~-------------------------------------------  326 (413)
T 3dzo_A          290 HPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGS-------------------------------------------  326 (413)
T ss_dssp             CCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSCS-------------------------------------------
T ss_pred             cCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhhH-------------------------------------------
Confidence            4556889999999999999999999999764421100                                           


Q ss_pred             HHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          371 MRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                                 .........++.++.+||.+||+.||++|||+.|+++||||++-
T Consensus       327 -----------~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~~  370 (413)
T 3dzo_A          327 -----------EWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQL  370 (413)
T ss_dssp             -----------GGGGSSCCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             -----------HHHHhhcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHHHH
Confidence                       00011123457789999999999999999999999999999863

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=2.2e-44  Score=342.14  Aligned_cols=266  Identities=21%  Similarity=0.257  Sum_probs=198.5

Q ss_pred             CCccC-CCeEEeccccccccEEEEEEE----ecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           87 GENLT-PRYRILSKMGEGTFGQVVECF----DNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        87 ~~~~~-~~y~~~~~lg~G~~g~V~~~~----~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      .+.+. ++|++.+.||+|+||.||+|+    +..+++.||||++.... ...+.+.+|+.++++++|+++     +++++
T Consensus        17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~   91 (327)
T 3lxl_A           17 PTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFI-----VKYRG   91 (327)
T ss_dssp             CCBCCGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTB-----CCEEE
T ss_pred             hhhhchhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCce-----eEEEE
Confidence            33443 689999999999999999998    57789999999997543 344668899999999988777     89988


Q ss_pred             eec--cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          161 WFD--YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       161 ~~~--~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      ++.  ..+.+++||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++.++|+|
T Consensus        92 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~D  170 (327)
T 3lxl_A           92 VSYGPGRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIAD  170 (327)
T ss_dssp             EEECSSSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECC
T ss_pred             EEecCCCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcc
Confidence            775  567899999999 999999998643 2599999999999999999999999999999999999998877555555


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHH
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  311 (433)
                      ||                           ++......      .....||..|+|||++.+..++.++|||||||++|+|
T Consensus       171 fg---------------------------~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  223 (327)
T 3lxl_A          171 FG---------------------------LAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYEL  223 (327)
T ss_dssp             GG---------------------------GCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHH
T ss_pred             cc---------------------------cceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHH
Confidence            54                           44332211      1224678889999999998899999999999999999


Q ss_pred             HhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       312 ~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      ++|..||.......... . ......+.                            ..........    .........+
T Consensus       224 l~g~~p~~~~~~~~~~~-~-~~~~~~~~----------------------------~~~~~~~~~~----~~~~~~~~~~  269 (327)
T 3lxl_A          224 FTYCDKSCSPSAEFLRM-M-GCERDVPA----------------------------LSRLLELLEE----GQRLPAPPAC  269 (327)
T ss_dssp             HTTTCGGGSHHHHHHHH-C-C----CCH----------------------------HHHHHHHHHT----TCCCCCCTTC
T ss_pred             HhCCCCCccccchhhhh-c-cccccccc----------------------------HHHHHHHhhc----ccCCCCCCcc
Confidence            99999996533211100 0 00000000                            0000000000    0011123456


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      +..+.+||.+||+.||++|||+.|++++
T Consensus       270 ~~~l~~li~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          270 PAEVHELMKLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             cHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            7899999999999999999999999643

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=1.2e-45  Score=374.88  Aligned_cols=279  Identities=24%  Similarity=0.328  Sum_probs=206.4

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc----
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY----  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~----  164 (433)
                      .++|++.+.||+|+||.||+|.+..+|+.||||+++..  ....+.+.+|+.++++++|+||     +++++++..    
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnI-----V~l~~v~~~~~~~   87 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNV-----VSAREVPDGLQKL   87 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTB-----CCEEECCTTTCCC
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCC-----Cceeeeecccccc
Confidence            36899999999999999999999999999999998743  3445678899999999998887     888887765    


Q ss_pred             --CCeEEEEEccC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          165 --RNHICIVFEKL-GPSLYDFLRKNSY-RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       165 --~~~~~lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                        ++..|+||||+ +++|.+++..... ..+++..++.++.||+.||+|||++||+||||||+|||++.++         
T Consensus        88 ~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g---------  158 (676)
T 3qa8_A           88 APNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGP---------  158 (676)
T ss_dssp             CTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCS---------
T ss_pred             cCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCC---------
Confidence              67889999999 9999999986432 3589999999999999999999999999999999999998654         


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                     ....++|+|||.+.......  ....||+.|+|||++.+..++.++|||||||++|+|++|..||
T Consensus       159 ---------------~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf  223 (676)
T 3qa8_A          159 ---------------QRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF  223 (676)
T ss_dssp             ---------------SSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSC
T ss_pred             ---------------CceeEEEcccccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCC
Confidence                           23357899999887654332  3458999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+........      ......    ................+....                .........++..+.+|
T Consensus       224 ~~~~~~~~~~------~~i~~~----~~~~~~~~~~l~g~~~~~~~l----------------p~p~~l~~~ls~~L~dL  277 (676)
T 3qa8_A          224 LPNWQPVQWH------GKVREK----SNEHIVVYDDLTGAVKFSSVL----------------PTPNHLSGILAGKLERW  277 (676)
T ss_dssp             CSSCHHHHSS------TTCC----------CCSCCCCSSSCCCCSSS----------------CCSCCCCGGGHHHHHHH
T ss_pred             Ccccchhhhh------hhhhcc----cchhhhhhhhhcccccccccc----------------CCchhhchhhhHHHHHH
Confidence            7654322110      000000    000000000000011111100                00011223457899999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      |.+||.+||++|||+.|+++||||+.
T Consensus       278 I~~mL~~DP~kRPTa~elL~hp~F~~  303 (676)
T 3qa8_A          278 LQCMLMWHQRQRGTDPQNPNVGCFQA  303 (676)
T ss_dssp             HHHHSCSSCC---CCTTCCCCTTHHH
T ss_pred             HHHHccCCHhhCcCHHHHhcCHHHHH
Confidence            99999999999999999999999975

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9.2e-44  Score=333.15  Aligned_cols=244  Identities=19%  Similarity=0.271  Sum_probs=192.8

Q ss_pred             CeEEeccccccccEEEEEEEecCCCc---EEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKE---LVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~---~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .|.+.+.||+|+||+||+|++..+++   .||+|++....  ...+.+.+|+.+++.++|+|+     +++++++.+.+.
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~   96 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNV-----LALIGIMLPPEG   96 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTB-----CCCCEEECCSSS
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCe-----eeEEEEEecCCC
Confidence            47788999999999999999765544   79999987533  345677899999999988877     999999976655


Q ss_pred             E-EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          168 I-CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       168 ~-~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      . ++||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++              
T Consensus        97 ~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~--------------  161 (298)
T 3pls_A           97 LPHVLLPYMCHGDLLQFIRSPQ-RNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESF--------------  161 (298)
T ss_dssp             CCEEEECCCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTC--------------
T ss_pred             CcEEEEecccCCCHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCC--------------
Confidence            4 9999999 999999997643 4789999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccC-------CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhC-CCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQ-------DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG-EAL  317 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g-~~p  317 (433)
                                   .+||+|||++.....       ......+|..|+|||.+.+..++.++|||||||++|+|++| .+|
T Consensus       162 -------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~  228 (298)
T 3pls_A          162 -------------TVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPP  228 (298)
T ss_dssp             -------------CEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCT
T ss_pred             -------------cEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCC
Confidence                         466777776653221       12234678899999999999999999999999999999995 555


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...+..+....+.....                                                 ......++..+.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~~l~~  259 (298)
T 3pls_A          229 YRHIDPFDLTHFLAQGRR-------------------------------------------------LPQPEYCPDSLYQ  259 (298)
T ss_dssp             TTTSCGGGHHHHHHTTCC-------------------------------------------------CCCCTTCCHHHHH
T ss_pred             CccCCHHHHHHHhhcCCC-------------------------------------------------CCCCccchHHHHH
Confidence            555444433332222110                                                 0012334678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q 013941          398 LLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~  418 (433)
                      ||.+||+.||++|||++++++
T Consensus       260 li~~~l~~~p~~Rps~~~ll~  280 (298)
T 3pls_A          260 VMQQCWEADPAVRPTFRVLVG  280 (298)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHccCChhhCcCHHHHHH
Confidence            999999999999999999875

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=4.6e-44  Score=335.32  Aligned_cols=245  Identities=16%  Similarity=0.211  Sum_probs=191.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCC---CcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee-ccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEK---KELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF-DYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~-~~~  165 (433)
                      .+|++.+.||+|+||.||+|++..+   ...||+|.+....  ...+.+.+|+.++++++|+|+     +++++++ ..+
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~   99 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV-----LSLLGICLRSE   99 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTB-----CCCCEEECCSS
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCE-----eeeeeEEEcCC
Confidence            4699999999999999999996543   3468999987532  345678899999999988877     9999984 566


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +..++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.            
T Consensus       100 ~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~------------  166 (298)
T 3f66_A          100 GSPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFT------------  166 (298)
T ss_dssp             SCCEEEEECCTTCBHHHHHHCTT-CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCC------------
T ss_pred             CceEEEEeCCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCC------------
Confidence            7899999999 889999997643 46899999999999999999999999999999999999976664            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccC-------CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-------DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEA  316 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~  316 (433)
                                     +||+|||++.....       ......||+.|+|||++.+..++.++|||||||++|+|++ |.+
T Consensus       167 ---------------~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~  231 (298)
T 3f66_A          167 ---------------VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAP  231 (298)
T ss_dssp             ---------------EEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ---------------EEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCC
Confidence                           55555555543221       1122467889999999999999999999999999999999 677


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+.+..+....+......                                                 .....++..+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~~~l~  262 (298)
T 3f66_A          232 PYPDVNTFDITVYLLQGRRL-------------------------------------------------LQPEYCPDPLY  262 (298)
T ss_dssp             SSTTSCTTTHHHHHHTTCCC-------------------------------------------------CCCTTCCHHHH
T ss_pred             CCccCCHHHHHHHHhcCCCC-------------------------------------------------CCCccCCHHHH
Confidence            77765554443333221110                                                 01123467899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q 013941          397 DLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~  418 (433)
                      ++|.+||+.||++|||+.|+++
T Consensus       263 ~li~~~l~~~p~~Rps~~ell~  284 (298)
T 3f66_A          263 EVMLKCWHPKAEMRPSFSELVS  284 (298)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHcCCChhhCcCHHHHHH
Confidence            9999999999999999999885

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=1.9e-44  Score=364.20  Aligned_cols=250  Identities=27%  Similarity=0.368  Sum_probs=205.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.++||+|+||.||+|.+.. +..||||+++......+.+.+|+.++++++|+||     +++++++.+ +.+|||
T Consensus       267 ~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpni-----v~~~~~~~~-~~~~lv  339 (535)
T 2h8h_A          267 ESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL-----VQLYAVVSE-EPIYIV  339 (535)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETT-TEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTB-----CCEEEEECS-SSCEEE
T ss_pred             hhhhhheecccCCCeEEEEEEECC-CceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCE-----eeEEEEEee-ccceEe
Confidence            469999999999999999999865 4569999998665556788999999999998877     999998876 678999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +++|.+++.......+++..+..++.||+.||+|||++|||||||||+|||++.++                   
T Consensus       340 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~-------------------  400 (535)
T 2h8h_A          340 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENL-------------------  400 (535)
T ss_dssp             ECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG-------------------
T ss_pred             eehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCC-------------------
Confidence            9999 88999999754334699999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                              .+||+|||++......    .....+|..|+|||++.+..++.++|||||||+||||++ |..||.+....+
T Consensus       401 --------~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~  472 (535)
T 2h8h_A          401 --------VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE  472 (535)
T ss_dssp             --------CEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH
T ss_pred             --------cEEEcccccceecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence                    4677777777654321    122356788999999998899999999999999999999 999998877766


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+.+...                                                 ......++..+.+||.+||+.
T Consensus       473 ~~~~i~~~~~-------------------------------------------------~~~~~~~~~~l~~li~~cl~~  503 (535)
T 2h8h_A          473 VLDQVERGYR-------------------------------------------------MPCPPECPESLHDLMCQCWRK  503 (535)
T ss_dssp             HHHHHHTTCC-------------------------------------------------CCCCTTCCHHHHHHHHHHTCS
T ss_pred             HHHHHHcCCC-------------------------------------------------CCCCCCCCHHHHHHHHHHcCC
Confidence            5554432110                                                 001234567899999999999


Q ss_pred             CCCCCCCHHHHhcC--CCCCC
Q 013941          406 DPAERLKAREALRH--PFFTR  424 (433)
Q Consensus       406 dP~~R~ta~ell~h--p~f~~  424 (433)
                      ||++|||+++|++.  .+|..
T Consensus       504 dP~~RPt~~~l~~~L~~~~~~  524 (535)
T 2h8h_A          504 EPEERPTFEYLQAFLEDYFTS  524 (535)
T ss_dssp             SGGGSCCHHHHHHHHHTSSCC
T ss_pred             ChhHCcCHHHHHHHHHHHhhc
Confidence            99999999999863  56654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=2.3e-45  Score=348.69  Aligned_cols=270  Identities=19%  Similarity=0.232  Sum_probs=201.8

Q ss_pred             eeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           83 VFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        83 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      .+...+...++|++.+.||+|+||.||+|++ .+++.||||++....  .....+.+|+.+++.+.|+||     +++++
T Consensus        21 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~   94 (326)
T 3uim_A           21 SLRELQVASDNFSNKNILGRGGFGKVYKGRL-ADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL-----LRLRG   94 (326)
T ss_dssp             CTHHHHTTTTSSCSTTEEECCSSSEEEEECC-SSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTB-----CCCCE
T ss_pred             cHHHHHHHhhccccceeEecCCCcEEEEEEe-cCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCc-----cceEE
Confidence            3344456678999999999999999999985 468899999987533  222357889999999888777     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CcEecCCCCCcEEEeeCCccc
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNSY--RSFPIDLVRELGRQLLESVAFMHEL---RLIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDikp~NIli~~~~~~~  234 (433)
                      ++.+.+..++||||+ +++|.+++.....  ..+++..+..++.||+.||+|||++   ||+||||||+|||++.++   
T Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~---  171 (326)
T 3uim_A           95 FCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEF---  171 (326)
T ss_dssp             EECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTC---
T ss_pred             EEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCC---
Confidence            999999999999999 8899999986532  3499999999999999999999999   999999999999996554   


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHH
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE  310 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~e  310 (433)
                                              .+||+|||++.......    ....||+.|+|||++.+..++.++|||||||++|+
T Consensus       172 ------------------------~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~  227 (326)
T 3uim_A          172 ------------------------EAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLE  227 (326)
T ss_dssp             ------------------------CEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHH
T ss_pred             ------------------------CEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHH
Confidence                                    56777777776543221    22469999999999998889999999999999999


Q ss_pred             HHhCCCCCCCCC-----hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          311 LCSGEALFQTHE-----NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       311 l~~g~~pf~~~~-----~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      |++|..||....     .......+..                   ...........+                 .....
T Consensus       228 l~~g~~pf~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~-----------------~~~~~  271 (326)
T 3uim_A          228 LITGQRAFDLARLANDDDVMLLDWVKG-------------------LLKEKKLEALVD-----------------VDLQG  271 (326)
T ss_dssp             HHHCCCSBCHHHHTTTSCSBHHHHHTT-------------------TTSSCCSTTSSC-----------------TTCTT
T ss_pred             HHhCCCcccccccccccchhHHHHHHH-------------------HhhchhhhhhcC-----------------hhhcc
Confidence            999999995211     0000000000                   000000000000                 00001


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCC
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF  421 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~  421 (433)
                      ......+..+.++|.+||+.||++|||+.||++|-.
T Consensus       272 ~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~  307 (326)
T 3uim_A          272 NYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLE  307 (326)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhc
Confidence            112233568999999999999999999999998743

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.8e-43  Score=362.22  Aligned_cols=244  Identities=25%  Similarity=0.341  Sum_probs=195.0

Q ss_pred             CCCeEEec-cccccccEEEEEEEec--CCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           91 TPRYRILS-KMGEGTFGQVVECFDN--EKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        91 ~~~y~~~~-~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .+++.+.+ +||+|+||.||+|.+.  .++..||||+++..  ....+.+.+|+.++++++|+||     +++++++.. 
T Consensus       334 ~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpni-----v~l~~~~~~-  407 (613)
T 2ozo_A          334 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYI-----VRLIGVCQA-  407 (613)
T ss_dssp             TTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTB-----CCEEEEEES-
T ss_pred             ccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCE-----eeEEEEecc-
Confidence            34566666 8999999999999875  35667999999753  2355778999999999988877     999999876 


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +.+++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++.            
T Consensus       408 ~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~------------  474 (613)
T 2ozo_A          408 EALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHY------------  474 (613)
T ss_dssp             SSEEEEEECCTTCBHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTE------------
T ss_pred             CCeEEEEEeCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCc------------
Confidence            5699999999 999999997543 46999999999999999999999999999999999999987764            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEAL  317 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~p  317 (433)
                                     +||+|||++.......      ....+|+.|+|||++.+..++.++|||||||++|||++ |..|
T Consensus       475 ---------------vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~P  539 (613)
T 2ozo_A          475 ---------------AKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKP  539 (613)
T ss_dssp             ---------------EEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             ---------------EEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence                           5566666655432211      11245688999999998899999999999999999998 9999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+..+....+....                       +.                          .....++.++.+
T Consensus       540 f~~~~~~~~~~~i~~~~-----------------------~~--------------------------~~p~~~~~~l~~  570 (613)
T 2ozo_A          540 YKKMKGPEVMAFIEQGK-----------------------RM--------------------------ECPPECPPELYA  570 (613)
T ss_dssp             TTTCCSHHHHHHHHTTC-----------------------CC--------------------------CCCTTCCHHHHH
T ss_pred             CCCCCHHHHHHHHHcCC-----------------------CC--------------------------CCCCcCCHHHHH
Confidence            99887766555443211                       00                          112345779999


Q ss_pred             HHHHhcccCCCCCCCHHHHh
Q 013941          398 LLQGLLRYDPAERLKAREAL  417 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell  417 (433)
                      ||.+||+.||++|||+.+|+
T Consensus       571 li~~cl~~dP~~RPs~~~l~  590 (613)
T 2ozo_A          571 LMSDCWIYKWEDRPDFLTVE  590 (613)
T ss_dssp             HHHHTTCSSTTTSCCHHHHH
T ss_pred             HHHHHcCCChhHCcCHHHHH
Confidence            99999999999999999975

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=7.4e-44  Score=336.39  Aligned_cols=248  Identities=15%  Similarity=0.224  Sum_probs=191.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecC---CCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNE---KKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      .++|.+.+.||+|+||.||+|.+..   +++.||+|+++..   ....+.+.+|+.++++++|+|+     +++++++.+
T Consensus        33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~  107 (313)
T 3brb_A           33 RNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNV-----IRLLGVCIE  107 (313)
T ss_dssp             GGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTB-----CCCCEEEEC
T ss_pred             HHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCe-----eeeeEEEee
Confidence            3689999999999999999998765   5568999998743   2334667889999999988877     999998876


Q ss_pred             CC-----eEEEEEccC-CCCHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccc
Q 013941          165 RN-----HICIVFEKL-GPSLYDFLRKN----SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       165 ~~-----~~~lv~e~~-~~~L~~~l~~~----~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~  234 (433)
                      .+     ..++||||+ +++|.+++...    ....+++..++.++.||+.||.|||++||+||||||+|||++.++   
T Consensus       108 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~---  184 (313)
T 3brb_A          108 MSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDM---  184 (313)
T ss_dssp             -------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTS---
T ss_pred             ccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCC---
Confidence            54     459999999 89999998532    234699999999999999999999999999999999999997655   


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHH
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  309 (433)
                                              .+||+|||++......     .....+++.|+|||++.+..++.++|||||||++|
T Consensus       185 ------------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  240 (313)
T 3brb_A          185 ------------------------TVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMW  240 (313)
T ss_dssp             ------------------------CEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred             ------------------------cEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHH
Confidence                                    4667777766543221     12246788999999999999999999999999999


Q ss_pred             HHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          310 ELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       310 el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      +|++ |..||.+.........+.....                                                 ....
T Consensus       241 el~~~g~~p~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~~  271 (313)
T 3brb_A          241 EIATRGMTPYPGVQNHEMYDYLLHGHR-------------------------------------------------LKQP  271 (313)
T ss_dssp             HHHTTSCCSSTTCCGGGHHHHHHTTCC-------------------------------------------------CCCB
T ss_pred             HHHhcCCCCCccCCHHHHHHHHHcCCC-------------------------------------------------CCCC
Confidence            9999 9999987665544433322100                                                 0112


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ..++..+.+||.+||+.||++|||+.+++++
T Consensus       272 ~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  302 (313)
T 3brb_A          272 EDCLDELYEIMYSCWRTDPLDRPTFSVLRLQ  302 (313)
T ss_dssp             TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             ccccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            3456789999999999999999999999864

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=8.6e-45  Score=346.18  Aligned_cols=274  Identities=20%  Similarity=0.219  Sum_probs=184.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEeccee-----ccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF-----DYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~-----~~~~  166 (433)
                      ++|++.+.||+|+||.||+|++  +++.||||++............|+..+..+.|+|+     +++++.+     ....
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i-----~~~~~~~~~~~~~~~~   85 (336)
T 3g2f_A           13 DNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNI-----ARFIVGDERVTADGRM   85 (336)
T ss_dssp             TSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTB-----CCEEEEEEEECTTSCE
T ss_pred             HHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccchhhHHHHHHHHHHHhccCcch-----hhheecccccccCCCc
Confidence            5799999999999999999975  68899999997544332222333333444666655     8887633     3345


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---------CcEecCCCCCcEEEeeCCccccc
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL---------RLIHTDLKPENILLVSAEYVKVP  236 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---------~ivHrDikp~NIli~~~~~~~l~  236 (433)
                      .+++||||+ +++|.+++....   .++..+..++.||+.||+|||++         ||+||||||+|||++.++     
T Consensus        86 ~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~-----  157 (336)
T 3g2f_A           86 EYLLVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDG-----  157 (336)
T ss_dssp             EEEEEECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTS-----
T ss_pred             eEEEEEecCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCC-----
Confidence            789999999 999999998764   68999999999999999999999         999999999999997655     


Q ss_pred             CccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-----------CCcccccCCcccchhhhhC-------CCCCcc
Q 013941          237 DYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----------DHSYVVSTRHYRAPEVILG-------LGWNYP  298 (433)
Q Consensus       237 d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----------~~~~~~gt~~y~aPE~~~~-------~~~~~~  298 (433)
                                            .+||+|||++.....           ......||+.|+|||++.+       ..++.+
T Consensus       158 ----------------------~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~  215 (336)
T 3g2f_A          158 ----------------------TCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQ  215 (336)
T ss_dssp             ----------------------CEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHH
T ss_pred             ----------------------cEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccc
Confidence                                  456666666643321           1123479999999999987       346678


Q ss_pred             chHHHHHHHHHHHHhCCCCCCCCCh-HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHh
Q 013941          299 CDLWSVGCILVELCSGEALFQTHEN-LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL  377 (433)
Q Consensus       299 ~DiwSlG~il~el~~g~~pf~~~~~-~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (433)
                      +|||||||++|||++|..||..... ......+....+..|.....     .........+..++...            
T Consensus       216 ~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------------  278 (336)
T 3g2f_A          216 VDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDM-----QVLVSREKQRPKFPEAW------------  278 (336)
T ss_dssp             HHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHH-----HHHHTTSCCCCCCCTTC------------
T ss_pred             cchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHH-----HhhhcccccCCCCCccc------------
Confidence            9999999999999999766643221 11111111111111110000     00000000011111100            


Q ss_pred             cCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHH------hcCCCCCCCcc
Q 013941          378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREA------LRHPFFTRDVR  427 (433)
Q Consensus       378 ~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~el------l~hp~f~~~~~  427 (433)
                              ......+.++.+||.+||+.||++|||++|+      +-++|-+++.+
T Consensus       279 --------~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~~~  326 (336)
T 3g2f_A          279 --------KENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNKSV  326 (336)
T ss_dssp             --------CCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC----
T ss_pred             --------ccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcccC
Confidence                    0011245689999999999999999999999      55788887543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=3.7e-44  Score=339.23  Aligned_cols=262  Identities=23%  Similarity=0.345  Sum_probs=195.1

Q ss_pred             CccCCCe-EEeccccccccEEEEEEE----ecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           88 ENLTPRY-RILSKMGEGTFGQVVECF----DNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        88 ~~~~~~y-~~~~~lg~G~~g~V~~~~----~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      ..+.++| +++++||+|+||+||++.    +..+++.||||+++...  ...+.+.+|+.++++++|+++     +++++
T Consensus        26 ~~~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~  100 (318)
T 3lxp_A           26 TVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHI-----IKYKG  100 (318)
T ss_dssp             CBCCGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTB-----CCEEE
T ss_pred             ceecHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcch-----hhEEE
Confidence            3455566 999999999999998775    44578999999997543  445678899999999998877     99999


Q ss_pred             eecc--CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          161 WFDY--RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       161 ~~~~--~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      ++.+  ...+++||||+ +++|.+++...   .+++..++.++.||+.||+|||++||+||||||+|||++.++.     
T Consensus       101 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~-----  172 (318)
T 3lxp_A          101 CCEDAGAASLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRL-----  172 (318)
T ss_dssp             EEEETTTTEEEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCC-----
T ss_pred             EEecCCCceEEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCC-----
Confidence            9877  47899999999 88999999775   4999999999999999999999999999999999999976654     


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHH
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVEL  311 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  311 (433)
                                            +||+|||++......      .....||..|+|||++.+..++.++|||||||++|+|
T Consensus       173 ----------------------~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  230 (318)
T 3lxp_A          173 ----------------------VKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYEL  230 (318)
T ss_dssp             ----------------------EEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHH
T ss_pred             ----------------------EEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHH
Confidence                                  566666655443322      1224678889999999998899999999999999999


Q ss_pred             HhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCc
Q 013941          312 CSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS  391 (433)
Q Consensus       312 ~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (433)
                      ++|..||........     ..........                         ...........    .........+
T Consensus       231 l~g~~p~~~~~~~~~-----~~~~~~~~~~-------------------------~~~~~~~~~~~----~~~~~~~~~~  276 (318)
T 3lxp_A          231 LTHCDSSQSPPTKFL-----ELIGIAQGQM-------------------------TVLRLTELLER----GERLPRPDKC  276 (318)
T ss_dssp             HTTTCGGGSHHHHHH-----HHHCSCCHHH-------------------------HHHHHHHHHHT----TCCCCCCTTC
T ss_pred             HhCCCcccccchhhh-----hhhcccccch-------------------------hHHHHHHHHhc----ccCCCCCccc
Confidence            999999965322110     0000000000                         00000000000    0001123456


Q ss_pred             hHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          392 AGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       392 ~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +.++.+||.+||+.||++|||++|+++
T Consensus       277 ~~~l~~li~~~l~~dP~~Rps~~ell~  303 (318)
T 3lxp_A          277 PAEVYHLMKNCWETEASFRPTFENLIP  303 (318)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            789999999999999999999999984

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=6.6e-44  Score=344.06  Aligned_cols=210  Identities=21%  Similarity=0.290  Sum_probs=168.8

Q ss_pred             CCCeEEeccccccccEEEEEE-----EecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           91 TPRYRILSKMGEGTFGQVVEC-----FDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~-----~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .++|++.+.||+|+||+||+|     .+..+++.||||+++...  ...+.+|+.++..+.+.  .|++++.+++++...
T Consensus        64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~e~~~~~~l~~~--~~~~iv~~~~~~~~~  139 (365)
T 3e7e_A           64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN--PWEFYIGTQLMERLKPS--MQHMFMKFYSAHLFQ  139 (365)
T ss_dssp             SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC--HHHHHHHHHHHHHSCGG--GGGGBCCEEEEEECS
T ss_pred             CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC--hhHHHHHHHHHHHhhhh--hhhhhhhhheeeecC
Confidence            467999999999999999999     467789999999987543  35677888888888632  245569999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhc---CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          166 NHICIVFEKL-GPSLYDFLRKN---SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      +..|+||||| +++|.+++...   ....+++..++.++.||+.||+|||++|||||||||+|||++.+....       
T Consensus       140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~-------  212 (365)
T 3e7e_A          140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQ-------  212 (365)
T ss_dssp             SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC-------
T ss_pred             CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCc-------
Confidence            9999999999 99999999742   234799999999999999999999999999999999999997621000       


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                           +    ...+....+||+|||+|.....     .....+||+.|+|||++.+..++.++|||||||++|||++|+.
T Consensus       213 -----~----~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~  283 (365)
T 3e7e_A          213 -----D----DEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTY  283 (365)
T ss_dssp             ---------------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSC
T ss_pred             -----c----ccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCC
Confidence                 0    0011245789999999864321     1233579999999999999999999999999999999999999


Q ss_pred             CCCC
Q 013941          317 LFQT  320 (433)
Q Consensus       317 pf~~  320 (433)
                      ||..
T Consensus       284 pf~~  287 (365)
T 3e7e_A          284 MKVK  287 (365)
T ss_dssp             CCEE
T ss_pred             cccc
Confidence            9954

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3e-44  Score=346.77  Aligned_cols=245  Identities=16%  Similarity=0.218  Sum_probs=188.3

Q ss_pred             CeEEeccccccccEEEEEEEecCCC---cEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEeccee-ccCC
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKK---ELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF-DYRN  166 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~---~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~-~~~~  166 (433)
                      .|++.+.||+|+||.||+|++..++   ..||+|.++..  ....+.+.+|+.++++++|+||     +++++++ ..++
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnI-----v~~~~~~~~~~~  164 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV-----LSLLGICLRSEG  164 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTB-----CCCCEEECCCSS
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCc-----ceEEEEEEcCCC
Confidence            5899999999999999999875433   46899998643  2345678899999999988777     9999975 4567


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      ..++||||+ +++|.+++.... ..+++..+..++.||+.||+|||++||+||||||+|||++.++              
T Consensus       165 ~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~--------------  229 (373)
T 3c1x_A          165 SPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKF--------------  229 (373)
T ss_dssp             CCEEEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC--------------
T ss_pred             CeEEEEECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCC--------------
Confidence            889999999 889999997644 4689999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC-------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD-------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEAL  317 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~p  317 (433)
                                   .+||+|||++......       .....+|+.|+|||++.+..++.++|||||||++|||++ |.+|
T Consensus       230 -------------~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p  296 (373)
T 3c1x_A          230 -------------TVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPP  296 (373)
T ss_dssp             -------------CEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred             -------------CEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCC
Confidence                         4566666666533211       122467789999999999999999999999999999999 7888


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+..+....+.....                                                 ......++..+.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~p~~~~~~l~~  327 (373)
T 3c1x_A          297 YPDVNTFDITVYLLQGRR-------------------------------------------------LLQPEYCPDPLYE  327 (373)
T ss_dssp             CTTSCSSCHHHHHHTTCC-------------------------------------------------CCCCTTCCHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCC-------------------------------------------------CCCCCCCCHHHHH
Confidence            876554433332221100                                                 0011235678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcC
Q 013941          398 LLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~h  419 (433)
                      +|.+||+.||++|||+.|++++
T Consensus       328 li~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          328 VMLKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHcCCChhhCcCHHHHHHH
Confidence            9999999999999999998864

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=6.1e-44  Score=337.52  Aligned_cols=249  Identities=22%  Similarity=0.299  Sum_probs=193.2

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc-hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec----cC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD----YR  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~----~~  165 (433)
                      .++|++.+.||+|+||.||+|++..+++.||||++... ....+.+.+|+.+++.+.|+|+     +++++++.    ..
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~~~~~  102 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNI-----LRLVAYCLRERGAK  102 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTB-----CCCCEEEEEEETTE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCe-----eeEEEEEEeccCCC
Confidence            35799999999999999999999999999999988643 3455678899999999988877     99999886    34


Q ss_pred             CeEEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          166 NHICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      +..++||||+ +++|.+++...  ....+++..++.++.||+.||.|||++||+||||||+|||++.++           
T Consensus       103 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~-----------  171 (317)
T 2buj_A          103 HEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEG-----------  171 (317)
T ss_dssp             EEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTS-----------
T ss_pred             ceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCC-----------
Confidence            5899999999 88999999752  234799999999999999999999999999999999999997655           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCC------------CcccccCCcccchhhhhCCC---CCccchHHHHHHH
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------------HSYVVSTRHYRAPEVILGLG---WNYPCDLWSVGCI  307 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------------~~~~~gt~~y~aPE~~~~~~---~~~~~DiwSlG~i  307 (433)
                                      .++|+|||++......            .....||+.|+|||++.+..   ++.++|||||||+
T Consensus       172 ----------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~i  235 (317)
T 2buj_A          172 ----------------QPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCV  235 (317)
T ss_dssp             ----------------CEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHH
T ss_pred             ----------------CEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHH
Confidence                            4677777766543211            01236799999999997654   6899999999999


Q ss_pred             HHHHHhCCCCCCCCChHH-HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhh
Q 013941          308 LVELCSGEALFQTHENLE-HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ  386 (433)
Q Consensus       308 l~el~~g~~pf~~~~~~~-~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (433)
                      +|+|++|..||....... .........                                                ....
T Consensus       236 l~el~~g~~p~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~  267 (317)
T 2buj_A          236 LYAMMFGEGPYDMVFQKGDSVALAVQNQ------------------------------------------------LSIP  267 (317)
T ss_dssp             HHHHHHSSCTTHHHHHTTSCHHHHHHCC--------------------------------------------------CC
T ss_pred             HHHHHhCCCChhhhhcccchhhHHhhcc------------------------------------------------CCCC
Confidence            999999999994210000 000000000                                                0001


Q ss_pred             ccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       387 ~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ....++.++.+||.+||+.||++|||+.+++++
T Consensus       268 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  300 (317)
T 2buj_A          268 QSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQ  300 (317)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHhhcChhhCCCHHHHHHH
Confidence            123457789999999999999999999999975

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=7.4e-44  Score=332.65  Aligned_cols=245  Identities=21%  Similarity=0.311  Sum_probs=189.7

Q ss_pred             CCeEEeccccccccEEEEEEEecC-CC--cEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE-KK--ELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~-~~--~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ++|++.+.||+|+||+||+|++.. ++  ..||||+++..    ....+.+.+|+.+++++.|+++     +++++++..
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----~~~~~~~~~   92 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL-----IRLYGVVLT   92 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTB-----CCEEEEECS
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCc-----ccEEEEEcc
Confidence            579999999999999999998643 33  36899998643    2345678899999999988777     999999887


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                      .+ .++||||+ +++|.+++.... ..+++..+..++.||+.||.|||++||+||||||+|||++.++.           
T Consensus        93 ~~-~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~-----------  159 (291)
T 1u46_A           93 PP-MKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDL-----------  159 (291)
T ss_dssp             SS-CEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTE-----------
T ss_pred             CC-ceeeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCC-----------
Confidence            65 88999999 899999998643 36999999999999999999999999999999999999987664           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEA  316 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~  316 (433)
                                      +||+|||++.......      ....+|..|+|||++.+..++.++|||||||++|+|++ |..
T Consensus       160 ----------------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~  223 (291)
T 1u46_A          160 ----------------VKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQE  223 (291)
T ss_dssp             ----------------EEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ----------------EEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence                            5666666554432211      22467888999999998889999999999999999999 999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+.+..+....+.......+                                                ....++.++.
T Consensus       224 p~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~l~  255 (291)
T 1u46_A          224 PWIGLNGSQILHKIDKEGERLP------------------------------------------------RPEDCPQDIY  255 (291)
T ss_dssp             TTTTCCHHHHHHHHHTSCCCCC------------------------------------------------CCTTCCHHHH
T ss_pred             CcccCCHHHHHHHHHccCCCCC------------------------------------------------CCcCcCHHHH
Confidence            9988776655544432111110                                                1134567899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q 013941          397 DLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~  418 (433)
                      ++|.+||+.||++|||+.++++
T Consensus       256 ~li~~~l~~~p~~Rps~~~l~~  277 (291)
T 1u46_A          256 NVMVQCWAHKPEDRPTFVALRD  277 (291)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHccCCcccCcCHHHHHH
Confidence            9999999999999999999986

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=2.8e-43  Score=361.63  Aligned_cols=241  Identities=24%  Similarity=0.350  Sum_probs=192.8

Q ss_pred             eEEe-ccccccccEEEEEEEe--cCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           94 YRIL-SKMGEGTFGQVVECFD--NEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        94 y~~~-~~lg~G~~g~V~~~~~--~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      +.+. ++||+|+||.||+|.+  ..+++.||||+++...   ...+.+.+|+.++++++|+||     +++++++.. +.
T Consensus       370 ~~l~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnI-----v~l~~~~~~-~~  443 (635)
T 4fl3_A          370 LTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI-----VRMIGICEA-ES  443 (635)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTB-----CCEEEEEES-SS
T ss_pred             ccccCCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEec-CC
Confidence            4443 4899999999999954  4667899999997533   335778899999999998877     999999865 55


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      .++||||+ +++|.+++....  .+++..++.++.||+.||+|||++|||||||||+|||++.++.+             
T Consensus       444 ~~lv~E~~~~g~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~-------------  508 (635)
T 4fl3_A          444 WMLVMEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYA-------------  508 (635)
T ss_dssp             EEEEEECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEE-------------
T ss_pred             EEEEEEccCCCCHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCE-------------
Confidence            88999999 999999998764  79999999999999999999999999999999999999887755             


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQ  319 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~  319 (433)
                                    ||+|||++......      .....+|..|+|||++.+..++.++|||||||++|||++ |..||.
T Consensus       509 --------------kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~  574 (635)
T 4fl3_A          509 --------------KISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYR  574 (635)
T ss_dssp             --------------EECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             --------------EEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence                          55555554432211      112356788999999999999999999999999999998 999999


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      +.+..+....+.....                       .                          .....++.++.+||
T Consensus       575 ~~~~~~~~~~i~~~~~-----------------------~--------------------------~~p~~~~~~l~~li  605 (635)
T 4fl3_A          575 GMKGSEVTAMLEKGER-----------------------M--------------------------GCPAGCPREMYDLM  605 (635)
T ss_dssp             TCCHHHHHHHHHTTCC-----------------------C--------------------------CCCTTCCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC-----------------------C--------------------------CCCCCCCHHHHHHH
Confidence            8877665554433210                       0                          11234577899999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q 013941          400 QGLLRYDPAERLKAREALR  418 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||+.||++|||+++|++
T Consensus       606 ~~cl~~dP~~RPs~~~l~~  624 (635)
T 4fl3_A          606 NLCWTYDVENRPGFAAVEL  624 (635)
T ss_dssp             HHHTCSSTTTSCCHHHHHH
T ss_pred             HHHcCCCHhHCcCHHHHHH
Confidence            9999999999999999874

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=5.1e-45  Score=347.85  Aligned_cols=269  Identities=20%  Similarity=0.261  Sum_probs=197.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---------hhHHHHHHHHHHHHHHH---------hCCCC--
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---------KYREAAMIEIDVLQRLA---------RHDIG--  151 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~---------~~~i~--  151 (433)
                      ++|++.+.||+|+||+||+|++  +|+.||||++....         ...+.+.+|+.+++.++         |+|+.  
T Consensus        20 ~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           20 EKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             ccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            5799999999999999999997  68999999997532         22367889999999997         66663  


Q ss_pred             ----------CcceeEecceecc-------------CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Q 013941          152 ----------GTRCVQIRNWFDY-------------RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV  207 (433)
Q Consensus       152 ----------~~~~v~~~~~~~~-------------~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL  207 (433)
                                |+|++++++++.+             .+.+||||||| +|++.+.+.+   ..+++..++.++.||+.||
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~aL  174 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTASL  174 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHHH
Confidence                      6777888888876             78999999999 8866666544   3689999999999999999


Q ss_pred             HHHH-hCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccc
Q 013941          208 AFMH-ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRA  286 (433)
Q Consensus       208 ~~LH-~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~a  286 (433)
                      +||| ++||+||||||+|||++.++... .++++....      .........+||+|||+|+.....  ..+||+.|+|
T Consensus       175 ~~lH~~~~ivHrDlKp~NILl~~~~~~~-~~~~~~~~~------~~~~~~~~~vkL~DFG~a~~~~~~--~~~gt~~y~a  245 (336)
T 2vuw_A          175 AVAEASLRFEHRDLHWGNVLLKKTSLKK-LHYTLNGKS------STIPSCGLQVSIIDYTLSRLERDG--IVVFCDVSMD  245 (336)
T ss_dssp             HHHHHHHCCBCSCCCGGGEEEEECSCSE-EEEEETTEE------EEEECTTEEEEECCCTTCBEEETT--EEECCCCTTC
T ss_pred             HHHHHhCCEeECCCCHHHEEEeccCCcc-eeeeccCcc------ccccCCCceEEEeeccccEecCCC--cEEEeecccC
Confidence            9999 99999999999999998875211 111110000      000012236899999999865533  4589999999


Q ss_pred             hhhhhCCCCCccchHHHHHHH-HHHHHhCCCCCCCCChHH-HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCC
Q 013941          287 PEVILGLGWNYPCDLWSVGCI-LVELCSGEALFQTHENLE-HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDG  364 (433)
Q Consensus       287 PE~~~~~~~~~~~DiwSlG~i-l~el~~g~~pf~~~~~~~-~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (433)
                      ||++.+.. +.++||||||++ .+++++|..||....... ....+.....                         +...
T Consensus       246 PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~-------------------------~~~~  299 (336)
T 2vuw_A          246 EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMT-------------------------FKTK  299 (336)
T ss_dssp             SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCC-------------------------CSSC
T ss_pred             hhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhc-------------------------cCcc
Confidence            99998876 899999998777 778889999984321101 1111110000                         0000


Q ss_pred             CCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHh-cCCCCC
Q 013941          365 ATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREAL-RHPFFT  423 (433)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell-~hp~f~  423 (433)
                      .                  .......+++++.+||.+||++|     ||+|+| +||||+
T Consensus       300 ~------------------~~~~~~~~s~~~~dli~~~L~~d-----sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          300 C------------------NTPAMKQIKRKIQEFHRTMLNFS-----SATDLLCQHSLFK  336 (336)
T ss_dssp             C------------------CSHHHHHHHHHHHHHHHHGGGSS-----SHHHHHHHCGGGC
T ss_pred             c------------------chhhhhhcCHHHHHHHHHHhccC-----CHHHHHhcCCCcC
Confidence            0                  00011234778999999999987     999999 999996

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.1e-43  Score=332.58  Aligned_cols=261  Identities=22%  Similarity=0.334  Sum_probs=195.8

Q ss_pred             CCCeEEeccccccccEEEEEEE----ecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           91 TPRYRILSKMGEGTFGQVVECF----DNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~----~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .++|++++.||+|+||.||+|+    +..+++.||||++.... ...+.+.+|+.++++++|+++     +++++++...
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----v~~~~~~~~~  114 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNI-----VKYKGVCYSA  114 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTB-----CCEEEEECC-
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCe-----eeEEEEEEec
Confidence            3579999999999999999998    46789999999987543 345678899999999988777     9999987654


Q ss_pred             --CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          166 --NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       166 --~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                        ..+++||||+ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.          
T Consensus       115 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~----------  183 (326)
T 2w1i_A          115 GRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENR----------  183 (326)
T ss_dssp             ---CCEEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTE----------
T ss_pred             CCCceEEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCc----------
Confidence              3789999999 889999998764 36999999999999999999999999999999999999987664          


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                       +||+|||++.......      ....+|..|+|||++.+..++.++|||||||++|+|++|..
T Consensus       184 -----------------~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~  246 (326)
T 2w1i_A          184 -----------------VKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIE  246 (326)
T ss_dssp             -----------------EEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred             -----------------EEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCC
Confidence                             5666666655433221      12356778999999998889999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCCh-hhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPH-HMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      ||.....     .+.+..+..+. ....   .........+.                          .......++.++
T Consensus       247 ~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------------------------~~~~~~~~~~~l  292 (326)
T 2w1i_A          247 KSKSPPA-----EFMRMIGNDKQGQMIV---FHLIELLKNNG--------------------------RLPRPDGCPDEI  292 (326)
T ss_dssp             GGGSHHH-----HHHHHHCTTCCTHHHH---HHHHHHHHTTC--------------------------CCCCCTTCCHHH
T ss_pred             CCCCCHH-----HHHHhhccccchhhhH---HHHHHHhhcCC--------------------------CCCCCCcccHHH
Confidence            9864211     11111111110 0000   00000000000                          011124567899


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q 013941          396 IDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||.+||+.||++|||+.|+++
T Consensus       293 ~~li~~cl~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          293 YMIMTECWNNNVNQRPSFRDLAL  315 (326)
T ss_dssp             HHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHcCCChhhCcCHHHHHH
Confidence            99999999999999999999975

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=9.7e-44  Score=339.69  Aligned_cols=261  Identities=20%  Similarity=0.263  Sum_probs=196.1

Q ss_pred             ceeeecCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHH--HHhCCCCCcceeEe
Q 013941           81 HYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQR--LARHDIGGTRCVQI  158 (433)
Q Consensus        81 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~--l~~~~i~~~~~v~~  158 (433)
                      ..++..++.+.++|++.+.||+|+||.||+|++  +++.||||++....  ...+.+|++++..  +.|+|+     +++
T Consensus        31 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~--~~~~~~e~~~~~~~~l~h~ni-----~~~  101 (342)
T 1b6c_B           31 GLPLLVQRTIARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSRE--ERSWFREAEIYQTVMLRHENI-----LGF  101 (342)
T ss_dssp             SSCHHHHHHHHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGGG--HHHHHHHHHHHHHSCCCCTTB-----CCE
T ss_pred             CCceeecccccccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCchh--HHHHHHHHHHHHHhhcCCCcE-----EEE
Confidence            445566677788999999999999999999987  58899999986533  3567788888887  566665     999


Q ss_pred             cceeccCC----eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCcEecCCCCCcE
Q 013941          159 RNWFDYRN----HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH--------ELRLIHTDLKPENI  225 (433)
Q Consensus       159 ~~~~~~~~----~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH--------~~~ivHrDikp~NI  225 (433)
                      ++++...+    .+++||||+ +++|.+++...   .+++..++.++.||+.||.|||        ++||+||||||+||
T Consensus       102 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NI  178 (342)
T 1b6c_B          102 IAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNI  178 (342)
T ss_dssp             EEEEECCCSSCCCEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGE
T ss_pred             EeeecccCCccceeEEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHE
Confidence            99988765    899999999 88999999875   5999999999999999999999        89999999999999


Q ss_pred             EEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-------CcccccCCcccchhhhhCCC----
Q 013941          226 LLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-------HSYVVSTRHYRAPEVILGLG----  294 (433)
Q Consensus       226 li~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~~~~~~----  294 (433)
                      |++.++                           .+||+|||++......       .....||+.|+|||++.+..    
T Consensus       179 ll~~~~---------------------------~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  231 (342)
T 1b6c_B          179 LVKKNG---------------------------TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKH  231 (342)
T ss_dssp             EECTTS---------------------------CEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTC
T ss_pred             EECCCC---------------------------CEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccc
Confidence            997655                           4677777776543332       23347999999999998763    


Q ss_pred             --CCccchHHHHHHHHHHHHhC----------CCCCCCCChHH-HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccC
Q 013941          295 --WNYPCDLWSVGCILVELCSG----------EALFQTHENLE-HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDW  361 (433)
Q Consensus       295 --~~~~~DiwSlG~il~el~~g----------~~pf~~~~~~~-~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  361 (433)
                        ++.++|||||||++|+|++|          ..||....... ....+.....                  ........
T Consensus       232 ~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~  293 (342)
T 1b6c_B          232 FESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVC------------------EQKLRPNI  293 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHT------------------TSCCCCCC
T ss_pred             cccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHH------------------HHHhCCCC
Confidence              33789999999999999999          77886532110 0011111000                  00000000


Q ss_pred             CCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          362 PDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      +.                     .......+..+.+||.+||+.||++|||++|+++|
T Consensus       294 ~~---------------------~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          294 PN---------------------RWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             CG---------------------GGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             cc---------------------cccchhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence            00                     00012235689999999999999999999999875

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=1.9e-43  Score=332.52  Aligned_cols=256  Identities=23%  Similarity=0.344  Sum_probs=194.2

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccc-----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      |...+.||+|+||.||+|.+  +++.||+|++...     ....+.+.+|+.++++++|+++     +++++++.+.+..
T Consensus        33 ~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i-----~~~~~~~~~~~~~  105 (307)
T 2nru_A           33 SVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENL-----VELLGFSSDGDDL  105 (307)
T ss_dssp             TTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTB-----CCEEEEECSSSSC
T ss_pred             cccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCe-----EEEEEEEecCCce
Confidence            44458999999999999985  5788999998642     2345678899999999988877     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNS-YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ++||||+ +++|.+++.... ...+++..++.++.||+.||.|||++||+||||||+|||++.++               
T Consensus       106 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~---------------  170 (307)
T 2nru_A          106 CLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAF---------------  170 (307)
T ss_dssp             EEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC---------------
T ss_pred             EEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCC---------------
Confidence            9999999 999999997432 24699999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                  .+||+|||++......     .....||+.|+|||++.+ .++.++|||||||++|+|++|..||...
T Consensus       171 ------------~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~  237 (307)
T 2nru_A          171 ------------TAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEH  237 (307)
T ss_dssp             ------------CEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTT
T ss_pred             ------------cEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccC
Confidence                        4677777766543321     123478999999999876 5889999999999999999999999875


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      ........+..........+        ..+....                           ........+..+.++|.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---------------------------~~~~~~~~~~~l~~li~~  282 (307)
T 2nru_A          238 REPQLLLDIKEEIEDEEKTI--------EDYIDKK---------------------------MNDADSTSVEAMYSVASQ  282 (307)
T ss_dssp             BSSSBTTHHHHHHHTTSCCH--------HHHSCSS---------------------------CSCCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHhhhhhhhh--------hhhcccc---------------------------ccccchHHHHHHHHHHHH
Confidence            54332222222111100000        0000000                           000112235689999999


Q ss_pred             hcccCCCCCCCHHHHhcC
Q 013941          402 LLRYDPAERLKAREALRH  419 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~h  419 (433)
                      ||+.||++|||+.+++++
T Consensus       283 cl~~~p~~Rps~~~l~~~  300 (307)
T 2nru_A          283 CLHEKKNKRPDIKKVQQL  300 (307)
T ss_dssp             HTCSSTTTSCCHHHHHHH
T ss_pred             HcCCCcccCcCHHHHHHH
Confidence            999999999999999864

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=4e-42  Score=354.34  Aligned_cols=245  Identities=24%  Similarity=0.315  Sum_probs=198.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCC---CcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEK---KELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      .++|++.+.||+|+||.||+|.+..+   +..||+|+++..  ....+.+.+|+.++++++|+||     +++++++. +
T Consensus       389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnI-----v~l~~~~~-~  462 (656)
T 2j0j_A          389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI-----VKLIGVIT-E  462 (656)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEC-S
T ss_pred             cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEe-c
Confidence            46899999999999999999998653   467999998643  3344678899999999988877     99999885 4


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +..|+||||+ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||++.++.            
T Consensus       463 ~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~------------  529 (656)
T 2j0j_A          463 NPVWIIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDC------------  529 (656)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTE------------
T ss_pred             CceEEEEEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCC------------
Confidence            6689999999 899999998653 36899999999999999999999999999999999999987764            


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQ  319 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~  319 (433)
                                     +||+|||++.......    ....+|+.|+|||++.+..++.++|||||||++|||++ |..||.
T Consensus       530 ---------------vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~  594 (656)
T 2j0j_A          530 ---------------VKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQ  594 (656)
T ss_dssp             ---------------EEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             ---------------EEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCC
Confidence                           5666666665433221    12356789999999998899999999999999999997 999999


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      +....+....+......                                                 .....++..+.+||
T Consensus       595 ~~~~~~~~~~i~~~~~~-------------------------------------------------~~~~~~~~~l~~li  625 (656)
T 2j0j_A          595 GVKNNDVIGRIENGERL-------------------------------------------------PMPPNCPPTLYSLM  625 (656)
T ss_dssp             TCCHHHHHHHHHHTCCC-------------------------------------------------CCCTTCCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCC-------------------------------------------------CCCccccHHHHHHH
Confidence            88776665554432100                                                 01134567899999


Q ss_pred             HHhcccCCCCCCCHHHHhc
Q 013941          400 QGLLRYDPAERLKAREALR  418 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~  418 (433)
                      .+||+.||++|||+.|+++
T Consensus       626 ~~~l~~dP~~RPs~~el~~  644 (656)
T 2j0j_A          626 TKCWAYDPSRRPRFTELKA  644 (656)
T ss_dssp             HHHTCSSGGGSCCHHHHHH
T ss_pred             HHHcCCChhHCcCHHHHHH
Confidence            9999999999999999975

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=2.7e-43  Score=327.94  Aligned_cols=231  Identities=16%  Similarity=0.054  Sum_probs=181.8

Q ss_pred             eecCC-ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEe
Q 013941           84 FAIGE-NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQI  158 (433)
Q Consensus        84 ~~~~~-~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~  158 (433)
                      +..|+ .+.++|++.+.||+|+||.||+|++..+++.||||++....    ...+.+.+|+.++.++.|+||     +++
T Consensus        22 ~~~g~~~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i-----v~~   96 (286)
T 3uqc_A           22 LVPGARIANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGV-----ARV   96 (286)
T ss_dssp             CCTTCEETTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTB-----CCE
T ss_pred             CCCCCEEecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCc-----cee
Confidence            34456 66788999999999999999999999999999999997542    334678889999999888777     999


Q ss_pred             cceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccC
Q 013941          159 RNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       159 ~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      ++++.+.+..|+||||+ |++|.+++...    .....+..++.||+.||+|||++||+||||||+|||++.+|.     
T Consensus        97 ~~~~~~~~~~~lv~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~-----  167 (286)
T 3uqc_A           97 LDVVHTRAGGLVVAEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGD-----  167 (286)
T ss_dssp             EEEEEETTEEEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSC-----
T ss_pred             eEEEEECCcEEEEEEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCC-----
Confidence            99999999999999999 89999998542    456678899999999999999999999999999999987664     


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                            +||+++|                 |++       .++.++|||||||++|+|++|+.|
T Consensus       168 ----------------------~kl~~~~-----------------~~~-------~~~~~~Di~slG~il~elltg~~P  201 (286)
T 3uqc_A          168 ----------------------VVLAYPA-----------------TMP-------DANPQDDIRGIGASLYALLVNRWP  201 (286)
T ss_dssp             ----------------------EEECSCC-----------------CCT-------TCCHHHHHHHHHHHHHHHHHSEEC
T ss_pred             ----------------------EEEEecc-----------------ccC-------CCCchhHHHHHHHHHHHHHHCCCC
Confidence                                  4555332                 444       378999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+....+....                            ....               ............++.++.+
T Consensus       202 f~~~~~~~~~~~~~----------------------------~~~~---------------~~~~~~~~~~~~~~~~l~~  238 (286)
T 3uqc_A          202 LPEAGVRSGLAPAE----------------------------RDTA---------------GQPIEPADIDRDIPFQISA  238 (286)
T ss_dssp             SCCCSBCCCSEECC----------------------------BCTT---------------SCBCCHHHHCTTSCHHHHH
T ss_pred             CCcCCcchhhHHHH----------------------------HHhc---------------cCCCChhhcccCCCHHHHH
Confidence            98754321000000                            0000               0000011223456789999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q 013941          398 LLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~  418 (433)
                      ||.+||+.||++| |+.|+++
T Consensus       239 li~~~l~~dP~~R-s~~el~~  258 (286)
T 3uqc_A          239 VAARSVQGDGGIR-SASTLLN  258 (286)
T ss_dssp             HHHHHHCTTSSCC-CHHHHHH
T ss_pred             HHHHHcccCCccC-CHHHHHH
Confidence            9999999999999 9999885

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=8e-43  Score=330.07  Aligned_cols=243  Identities=20%  Similarity=0.274  Sum_probs=192.5

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|++.+.||+|+||.||+|.+..   .||+|+++...   ...+.+.+|+.++++++|+|+     +++++++.+.+.
T Consensus        32 ~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i-----v~~~~~~~~~~~  103 (319)
T 2y4i_B           32 FEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENV-----VLFMGACMSPPH  103 (319)
T ss_dssp             CSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTB-----CCCCEEEECSSC
T ss_pred             HHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCE-----eEEEEEEecCCc
Confidence            4689999999999999999998754   39999986432   223456679999998888777     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +++||||+ +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++ ++               
T Consensus       104 ~~iv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~---------------  166 (319)
T 2y4i_B          104 LAIITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NG---------------  166 (319)
T ss_dssp             EEEECBCCCSEEHHHHTTSSC-CCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC------------------
T ss_pred             eEEEeecccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CC---------------
Confidence            99999999 899999997643 4689999999999999999999999999999999999996 33               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCcccc--------CCCcccccCCcccchhhhhC---------CCCCccchHHHHHHHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEH--------QDHSYVVSTRHYRAPEVILG---------LGWNYPCDLWSVGCILV  309 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~--------~~~~~~~gt~~y~aPE~~~~---------~~~~~~~DiwSlG~il~  309 (433)
                                  .++|+|||++....        .......||+.|+|||++.+         ..++.++|||||||++|
T Consensus       167 ------------~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~  234 (319)
T 2y4i_B          167 ------------KVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWY  234 (319)
T ss_dssp             ------------CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHH
T ss_pred             ------------CEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHH
Confidence                        46677777654322        11223468999999999975         35789999999999999


Q ss_pred             HHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccC
Q 013941          310 ELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD  389 (433)
Q Consensus       310 el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (433)
                      +|++|..||...........+.....+.                                                ....
T Consensus       235 el~~g~~p~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~  266 (319)
T 2y4i_B          235 ELHAREWPFKTQPAEAIIWQMGTGMKPN------------------------------------------------LSQI  266 (319)
T ss_dssp             HHHHSSCSSSSCCHHHHHHHHHTTCCCC------------------------------------------------CCCS
T ss_pred             HHHhCCCCCCCCCHHHHHHHhccCCCCC------------------------------------------------CCcC
Confidence            9999999998877665544433211100                                                0011


Q ss_pred             CchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          390 HSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       390 ~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .++.++.+||.+||..||++|||+.++++
T Consensus       267 ~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  295 (319)
T 2y4i_B          267 GMGKEISDILLFCWAFEQEERPTFTKLMD  295 (319)
T ss_dssp             SCCTTHHHHHHHHHCSSTTTSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            34568999999999999999999999985

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2e-42  Score=359.53  Aligned_cols=245  Identities=24%  Similarity=0.346  Sum_probs=197.0

Q ss_pred             eecCCccCCCeEEeccccccccEEEEEEEecC-CCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           84 FAIGENLTPRYRILSKMGEGTFGQVVECFDNE-KKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        84 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      +..|+.+.++|++.+.||+|+||.||+|.+.. +++.||||++...  ......+.+|+.++.+++|+||     +++++
T Consensus        72 ~~~g~~~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~i-----v~~~~  146 (681)
T 2pzi_A           72 LNPGDIVAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSI-----VQIFN  146 (681)
T ss_dssp             SCTTCEETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTB-----CCEEE
T ss_pred             CCCCCEeCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCc-----CeEee
Confidence            34567788999999999999999999999976 7899999998643  2344567889999999988777     99999


Q ss_pred             eeccCCe-----EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCccc
Q 013941          161 WFDYRNH-----ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVK  234 (433)
Q Consensus       161 ~~~~~~~-----~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~  234 (433)
                      ++...+.     .||||||+ |++|.+++..    .+++..++.++.||+.||.|||++|||||||||+|||++.+    
T Consensus       147 ~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~----  218 (681)
T 2pzi_A          147 FVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE----  218 (681)
T ss_dssp             EEEEECTTSCEEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS----
T ss_pred             eEeecCCCCCceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC----
Confidence            9887554     79999999 8999887754    59999999999999999999999999999999999999542    


Q ss_pred             ccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhC
Q 013941          235 VPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       235 l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g  314 (433)
                                              .+||+|||++...... ....||+.|+|||++.+. ++.++|||||||++|+|++|
T Consensus       219 ------------------------~~kl~DFG~a~~~~~~-~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g  272 (681)
T 2pzi_A          219 ------------------------QLKLIDLGAVSRINSF-GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLD  272 (681)
T ss_dssp             ------------------------CEEECCCTTCEETTCC-SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSC
T ss_pred             ------------------------cEEEEecccchhcccC-CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhC
Confidence                                    5789999988765443 446899999999999775 48999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHH
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGD  394 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (433)
                      ..||.+....           ..+                        ..               .+      ....++.
T Consensus       273 ~~~~~~~~~~-----------~~~------------------------~~---------------~~------~~~~~~~  296 (681)
T 2pzi_A          273 LPTRNGRYVD-----------GLP------------------------ED---------------DP------VLKTYDS  296 (681)
T ss_dssp             CCEETTEECS-----------SCC------------------------TT---------------CH------HHHHCHH
T ss_pred             CCCCcccccc-----------ccc------------------------cc---------------cc------ccccCHH
Confidence            9888642100           000                        00               00      0012457


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          395 LIDLLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       395 l~~li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      +.+||.+||+.||++||+..+++.|+|+.
T Consensus       297 l~~li~~~l~~dP~~R~~~~~~l~~~l~~  325 (681)
T 2pzi_A          297 YGRLLRRAIDPDPRQRFTTAEEMSAQLTG  325 (681)
T ss_dssp             HHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             HHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence            89999999999999999988888888874

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=100.00  E-value=2.5e-35  Score=298.36  Aligned_cols=183  Identities=20%  Similarity=0.125  Sum_probs=127.7

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEeccc-----------hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-----------NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-----------~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ....++.|++|.+..++....|+.||+|++.+.           ....+.+.+|+++|+++ .|+|+     ++++++++
T Consensus       238 w~~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i-----~~~~~~~e  312 (569)
T 4azs_A          238 WQNQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDA-----PAVLAHGE  312 (569)
T ss_dssp             EECC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCC-----CCEEEEEE
T ss_pred             hhhccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCe-----eEEEEEEE
Confidence            345678899999998888889999999999642           23446688999999999 45555     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      +++.+||||||+ |++|.++|...+  .+++.   .|+.||+.||+|||++|||||||||+|||++.+|           
T Consensus       313 d~~~~yLVMEyv~G~~L~d~i~~~~--~l~~~---~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg-----------  376 (569)
T 4azs_A          313 NAQSGWLVMEKLPGRLLSDMLAAGE--EIDRE---KILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQ-----------  376 (569)
T ss_dssp             CSSEEEEEEECCCSEEHHHHHHTTC--CCCHH---HHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTS-----------
T ss_pred             ECCEEEEEEecCCCCcHHHHHHhCC--CCCHH---HHHHHHHHHHHHHHHCCceeccCchHhEEECCCC-----------
Confidence            999999999999 999999998765  67654   5889999999999999999999999999997665           


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                      .+||+|||+|+.....   ..+.+||+.|||||++.+ .+..++|+||+|++++++.++..
T Consensus       377 ----------------~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~  436 (569)
T 4azs_A          377 ----------------HARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWS  436 (569)
T ss_dssp             ----------------CEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC------------------CCCCTTHH
T ss_pred             ----------------CEEEeecccCeeCCCCCccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccc
Confidence                            4677777776544322   344689999999999976 46788999999999888766543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.95  E-value=1.3e-28  Score=247.94  Aligned_cols=178  Identities=19%  Similarity=0.177  Sum_probs=137.5

Q ss_pred             EEeccccccccEEEEEEEecCCCcEEEEEEeccch---------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ...+.||+|+||.||+|.  ..++.+++|+.....         ...+.+.+|+.++++++|+|+     +++..++...
T Consensus       339 ~~~~~LG~G~fg~Vy~~~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nI-----v~~~~~~~~~  411 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDS--YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGI-----PAPYIFDVDL  411 (540)
T ss_dssp             ---------CCEEEEEEE--CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTC-----CCCCEEEEET
T ss_pred             CCCCEEeeCCCEEEEEEE--ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCc-----CceEEEEEeC
Confidence            456799999999999994  557789999864311         123457899999999999988     6444444456


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +..||||||+ +++|.+++..          +..++.||+.||+|||++||+||||||+|||++.               
T Consensus       412 ~~~~lVmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~---------------  466 (540)
T 3en9_A          412 DNKRIMMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK---------------  466 (540)
T ss_dssp             TTTEEEEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS---------------
T ss_pred             CccEEEEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC---------------
Confidence            6679999999 8999999864          5689999999999999999999999999999842               


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC----------cccccCCcccchhhhhC--CCCCccchHHHHHHHHHHHH
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH----------SYVVSTRHYRAPEVILG--LGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~----------~~~~gt~~y~aPE~~~~--~~~~~~~DiwSlG~il~el~  312 (433)
                                    .+||+|||+++......          ....||+.|||||++.+  ..|+..+|+||..+-..+.+
T Consensus       467 --------------~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v  532 (540)
T 3en9_A          467 --------------DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDV  532 (540)
T ss_dssp             --------------SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             --------------eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                          58999999988765422          24689999999999987  56888899999999988888


Q ss_pred             hCCCCC
Q 013941          313 SGEALF  318 (433)
Q Consensus       313 ~g~~pf  318 (433)
                      .++.+|
T Consensus       533 ~~r~rY  538 (540)
T 3en9_A          533 ERRARY  538 (540)
T ss_dssp             HTCSCC
T ss_pred             Hhcccc
Confidence            777665

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.93  E-value=7.6e-26  Score=209.24  Aligned_cols=155  Identities=24%  Similarity=0.303  Sum_probs=118.7

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-------------------hhHHHHHHHHHHHHHHHhCCCCCc
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-------------------KYREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------------------~~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      .|.+.+.||+|+||.||+|++ .+|+.||||+++...                   .....+.+|+.+++++.|  +   
T Consensus        91 ~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~--~---  164 (282)
T 1zar_A           91 VDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG--L---  164 (282)
T ss_dssp             CSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT--S---
T ss_pred             EEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC--C---
Confidence            466779999999999999999 889999999986422                   134567899999999972  2   


Q ss_pred             ceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCc
Q 013941          154 RCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEY  232 (433)
Q Consensus       154 ~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~  232 (433)
                         ++.+++.. +..|+||||+ |++|.+ +.      .  .....++.||+.||.|||++||+||||||+|||++ +| 
T Consensus       165 ---~v~~~~~~-~~~~lvmE~~~g~~L~~-l~------~--~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~-  229 (282)
T 1zar_A          165 ---AVPKVYAW-EGNAVLMELIDAKELYR-VR------V--ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EE-  229 (282)
T ss_dssp             ---SSCCEEEE-ETTEEEEECCCCEEGGG-CC------C--SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TT-
T ss_pred             ---CcCeEEec-cceEEEEEecCCCcHHH-cc------h--hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CC-
Confidence               33333333 4569999999 889987 32      1  23557999999999999999999999999999997 55 


Q ss_pred             ccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC----------CCCCccchHH
Q 013941          233 VKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG----------LGWNYPCDLW  302 (433)
Q Consensus       233 ~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~----------~~~~~~~Diw  302 (433)
                                                .+||+|||+|.          .+..|+|||++..          ..|+..+|+|
T Consensus       230 --------------------------~vkl~DFG~a~----------~~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~  273 (282)
T 1zar_A          230 --------------------------GIWIIDFPQSV----------EVGEEGWREILERDVRNIITYFSRTYRTEKDIN  273 (282)
T ss_dssp             --------------------------EEEECCCTTCE----------ETTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_pred             --------------------------cEEEEECCCCe----------ECCCCCHHHHHHHHHHHHHHHHHHhcCCCCChH
Confidence                                      47888888874          3556899999864          2345556665


Q ss_pred             HH
Q 013941          303 SV  304 (433)
Q Consensus       303 Sl  304 (433)
                      .+
T Consensus       274 ~~  275 (282)
T 1zar_A          274 SA  275 (282)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.89  E-value=8.2e-23  Score=186.60  Aligned_cols=137  Identities=19%  Similarity=0.177  Sum_probs=109.3

Q ss_pred             eEEeccccccccEEEEEEEecCCCcE--EEEEEeccchh-------------------------hHHHHHHHHHHHHHHH
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKEL--VAIKIVRSINK-------------------------YREAAMIEIDVLQRLA  146 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~--vavK~~~~~~~-------------------------~~~~~~~E~~~l~~l~  146 (433)
                      |++.+.||+|+||.||+|.+..+|+.  ||||+++....                         ....+.+|+.++.++.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999998788999  99998753211                         1135778999999999


Q ss_pred             hCCCCCcceeEecceeccCCeEEEEEccCC--C----CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH-hCCcEecC
Q 013941          147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLG--P----SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH-ELRLIHTD  219 (433)
Q Consensus       147 ~~~i~~~~~v~~~~~~~~~~~~~lv~e~~~--~----~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH-~~~ivHrD  219 (433)
                      |+++..+.++..       +..+|||||++  |    +|.++...     .++..+..++.||+.||.||| ++||+|||
T Consensus       129 ~~~i~~p~~~~~-------~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~givHrD  196 (258)
T 1zth_A          129 EAGVSVPQPYTY-------MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEAELVHAD  196 (258)
T ss_dssp             HTTCCCCCEEEE-------ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTSCEECSS
T ss_pred             hCCCCCCeEEEc-------CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHCCEEeCC
Confidence            998755555432       34689999994  3    77776432     235567899999999999999 99999999


Q ss_pred             CCCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccc
Q 013941          220 LKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE  271 (433)
Q Consensus       220 ikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~  271 (433)
                      |||+|||++.                             .++|+|||+|...
T Consensus       197 lkp~NILl~~-----------------------------~~~liDFG~a~~~  219 (258)
T 1zth_A          197 LSEYNIMYID-----------------------------KVYFIDMGQAVTL  219 (258)
T ss_dssp             CSTTSEEESS-----------------------------SEEECCCTTCEET
T ss_pred             CCHHHEEEcC-----------------------------cEEEEECcccccC
Confidence            9999999842                             5899999998653

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.79  E-value=6.8e-19  Score=167.06  Aligned_cols=144  Identities=20%  Similarity=0.206  Sum_probs=103.5

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch-----------------------hhHHHHHHHHHHHHHHHhCCC
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-----------------------KYREAAMIEIDVLQRLARHDI  150 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----------------------~~~~~~~~E~~~l~~l~~~~i  150 (433)
                      |++.+.||+|+||.||+|.+ .+|+.||||+++...                       ..+-...+|...|.++.+.++
T Consensus        97 Y~I~~~IG~Gk~a~VY~a~d-~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv  175 (397)
T 4gyi_A           97 YSVGSRIGVGKESDIMIVAD-EKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF  175 (397)
T ss_dssp             SEEEEEEEECSSEEEEEEEC-TTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEecCEeeeCCceEEEEEEC-CCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999997 468999999875210                       001123468889999988776


Q ss_pred             CCcceeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEee
Q 013941          151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVS  229 (433)
Q Consensus       151 ~~~~~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~  229 (433)
                      ..+..+   +.    ...+|||||+ |++|.++.        ....+..++.||+.+|.+||++|||||||||.|||++.
T Consensus       176 ~vp~p~---~~----~~~~LVME~i~G~~L~~l~--------~~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~  240 (397)
T 4gyi_A          176 PVPEPI---AQ----SRHTIVMSLVDALPMRQVS--------SVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIRE  240 (397)
T ss_dssp             SCCCEE---EE----ETTEEEEECCSCEEGGGCC--------CCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEE
T ss_pred             CCCeee---ec----cCceEEEEecCCccHhhhc--------ccHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeC
Confidence            333322   21    1237999999 77775432        12345678899999999999999999999999999998


Q ss_pred             CCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCcc
Q 013941          230 AEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF  270 (433)
Q Consensus       230 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~  270 (433)
                      +|...-.+                 .....+.|+||+.+..
T Consensus       241 dgd~~d~~-----------------~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          241 EKDAEDPS-----------------SITLTPIIIXFPQMVS  264 (397)
T ss_dssp             EECSSCTT-----------------SEEEEEEECCCTTCEE
T ss_pred             CCCccccc-----------------ccccceEEEEeCCccc
Confidence            77321110                 1112478999997754

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.37  E-value=1.6e-12  Score=118.50  Aligned_cols=108  Identities=11%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +.|++...++.|+.+.||++...  ++.+++|+..... .....+.+|+.+++.+.. .+   .+.++++++.+.+..|+
T Consensus        14 ~~~~~~~~~~g~s~~~v~~~~~~--~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~-~~---~vP~v~~~~~~~~~~~l   87 (263)
T 3tm0_A           14 EKYRCVKDTEGMSPAKVYKLVGE--NENLYLKMTDSRYKGTTYDVEREKDMMLWLEG-KL---PVPKVLHFERHDGWSNL   87 (263)
T ss_dssp             TTSEEEECCSCCSSSEEEEEECS--SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTT-TS---CCCCEEEEEEETTEEEE
T ss_pred             ccceeEeeccCCCCCeEEEEECC--CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhc-CC---CCCeEEEEEecCCceEE
Confidence            35899999999999999999743  6789999986422 223457889999999965 22   34667777778889999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE  212 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  212 (433)
                      |||++ |.+|.+.+.       +......++.+++.+|..||+
T Consensus        88 v~e~i~G~~l~~~~~-------~~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           88 LMSEADGVLCSEEYE-------DEQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             EEECCSSEEHHHHCC-------TTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCeehhhccC-------CcccHHHHHHHHHHHHHHHhC
Confidence            99999 888876531       122345788899999999998

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.24  E-value=2.6e-11  Score=110.10  Aligned_cols=107  Identities=13%  Similarity=0.087  Sum_probs=73.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ..|.+....+.|..+.||++.. .+|+.+++|+....  ....+.+|+.+++.+.+.++.   +.+++.+...++..++|
T Consensus        20 ~~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~--~~~~~~~E~~~l~~l~~~~~~---vP~~~~~~~~~~~~~~v   93 (264)
T 1nd4_A           20 FGYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG--ALNELQDEAARLSWLATTGVP---CAAVLDVVTEAGRDWLL   93 (264)
T ss_dssp             TTCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC--TTSCHHHHHHHHHHHHTTTCC---BCCEEEEEECSSCEEEE
T ss_pred             CCCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc--cchhhhHHHHHHHHHHhCCCC---CCeEEEeccCCCCCEEE
Confidence            3466655555677799999964 55677999997653  224577899999999876542   34566666777789999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR  214 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~  214 (433)
                      ||++ |.+|.  ..     ...   ...++.+++..|..||+..
T Consensus        94 ~e~i~G~~l~--~~-----~~~---~~~~~~~l~~~l~~lh~~~  127 (264)
T 1nd4_A           94 LGEVPGQDLL--SS-----HLA---PAEKVSIMADAMRRLHTLD  127 (264)
T ss_dssp             EECCSSEETT--TS-----CCC---HHHHHHHHHHHHHHHTTSC
T ss_pred             EEecCCcccC--cC-----cCC---HhHHHHHHHHHHHHHhCCC
Confidence            9999 77773  11     122   2356677778888888643

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=99.17  E-value=5.8e-11  Score=110.61  Aligned_cols=102  Identities=17%  Similarity=0.132  Sum_probs=71.7

Q ss_pred             ccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHh-CCCCCcceeEecceeccCC---eEEEEEc
Q 013941           98 SKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR-HDIGGTRCVQIRNWFDYRN---HICIVFE  173 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~-~~i~~~~~v~~~~~~~~~~---~~~lv~e  173 (433)
                      +.++.|....||++.     ..+++|+.... .....+.+|+.+++.+.. ..+..|.++   ......+   ..|+||+
T Consensus        26 ~~~~~G~~n~v~~v~-----~~~vlR~~~~~-~~~~~~~~E~~~l~~l~~~~~v~vP~~~---~~~~~~~~~~~~~~vm~   96 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN-----RDFIFKFPKHS-RGSTNLFNEVNILKRIHNKLPLPIPEVV---FTGMPSETYQMSFAGFT   96 (304)
T ss_dssp             CEEEECSSEEEEEST-----TSEEEEEESSH-HHHHHHHHHHHHHHHHTTSSSSCCCCEE---EECCCCSSCSCSCEEEE
T ss_pred             EecCCCCcceEEEEC-----CEEEEEecCCc-chHHHHHHHHHHHHHHHhcCCCCCCceE---eecCCCCCCCcceEEEc
Confidence            468999999999873     45899986543 345678889999999854 444334333   3322222   4589999


Q ss_pred             cC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 013941          174 KL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE  212 (433)
Q Consensus       174 ~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  212 (433)
                      ++ |.+|.+....    .++.++...++.|++..|..||+
T Consensus        97 ~i~G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~LH~  132 (304)
T 3sg8_A           97 KIKGVPLTPLLLN----NLPKQSQNQAAKDLARFLSELHS  132 (304)
T ss_dssp             CCCCEECCHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeECCccccc----cCCHHHHHHHHHHHHHHHHHHHc
Confidence            99 7777654332    47788888899999999999986

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.15  E-value=1.6e-10  Score=110.32  Aligned_cols=108  Identities=14%  Similarity=0.151  Sum_probs=76.1

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEec--cch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC---CeE
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR---NHI  168 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~--~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~---~~~  168 (433)
                      .++.|+.|.++.||++...  +..+++|+..  ...  .....+.+|+.+++.+...++.   +.+++.++.+.   +..
T Consensus        42 ~~~~l~~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vp---vP~~~~~~~~~~~~g~~  116 (359)
T 3dxp_A           42 SVEQFKGGQSNPTFKLVTP--GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVP---VAKMYALCEDESVIGRA  116 (359)
T ss_dssp             EEEECCC-CCSCEEEEECS--SCEEEEECCCC----------CHHHHHHHHHHHTTSSSC---CCCEEEEECCTTTTSSC
T ss_pred             eEEEcCCcccceEEEEEEC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCC---CCcEEEECCCCCccCCe
Confidence            4678899999999999753  4578899876  322  2234677899999999876553   35555555554   558


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE  212 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  212 (433)
                      |+|||++ |..+.+.    ....++......++.+++.+|..||+
T Consensus       117 ~~vme~v~G~~l~~~----~~~~l~~~~~~~~~~~l~~~La~LH~  157 (359)
T 3dxp_A          117 FYIMEFVSGRVLWDQ----SLPGMSPAERTAIYDEMNRVIAAMHT  157 (359)
T ss_dssp             EEEEECCCCBCCCCT----TCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCeecCCC----ccccCCHHHHHHHHHHHHHHHHHHhC
Confidence            9999999 6666431    11247788889999999999999997

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.73  E-value=1.8e-07  Score=86.96  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=67.3

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhC-CCCCcceeEeccee-ccCCeEEEEEcc
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARH-DIGGTRCVQIRNWF-DYRNHICIVFEK  174 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~-~i~~~~~v~~~~~~-~~~~~~~lv~e~  174 (433)
                      ++.++.|....||+.     +..+++|+... ......+.+|..+|+.+.+. .+..|   +.+.+. ...+..++|||+
T Consensus        24 v~~l~~G~~n~v~~v-----g~~~VlR~~~~-~~~~~~~~~E~~~L~~L~~~~~v~VP---~~~~~~~~~~g~~~~v~e~   94 (306)
T 3tdw_A           24 VESLGEGFRNYAILV-----NGDWVFRFPKS-QQGADELNKEIQLLPLLVGCVKVNIP---QYVYIGKRSDGNPFVGYRK   94 (306)
T ss_dssp             EEEEEECSSEEEEEE-----TTTEEEEEESS-HHHHHHHHHHHHHHHHHTTTCSSBCC---CEEEEEECTTSCEEEEEEC
T ss_pred             eeecCCCcceeEEEE-----CCEEEEEecCC-chHHHHHHHHHHHHHHHHhcCCCCCC---CeEeecccCCCceEEEEec
Confidence            345788998999988     45688998533 33456788999999999864 33223   333333 245667899999


Q ss_pred             C-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 013941          175 L-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE  212 (433)
Q Consensus       175 ~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  212 (433)
                      + |.+|.+....    .++......++.++...|..||+
T Consensus        95 i~G~~l~~~~~~----~l~~~~~~~~~~~lg~~La~LH~  129 (306)
T 3tdw_A           95 VQGQILGEDGMA----VLPDDAKDRLALQLAEFMNELSA  129 (306)
T ss_dssp             CCSEECHHHHHT----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeECchhhhh----hCCHHHHHHHHHHHHHHHHHHhc
Confidence            9 7777663221    34555555666666666666664

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.43  E-value=2e-06  Score=78.15  Aligned_cols=101  Identities=12%  Similarity=0.135  Sum_probs=69.3

Q ss_pred             ccccccE-EEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-CC
Q 013941          100 MGEGTFG-QVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GP  177 (433)
Q Consensus       100 lg~G~~g-~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~  177 (433)
                      +..|..+ .||+......+..+++|+-...  ....+.+|..+|+.+.. .+.   +.+++.++.+.+..++|||++ |.
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~--~~~~~~~E~~~l~~l~~-~vP---VP~v~~~~~~~~~~~lvme~l~G~  105 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGKGS--VANDVTDEMVRLNWLTA-FMP---LPTIKHFIRTPDDAWLLTTAIPGK  105 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEETH--HHHHHHHHHHHHHHHTT-TSC---CCCEEEEEEETTEEEEEEECCCSE
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECCCC--CHhHHHHHHHHHHHhcc-CCC---cCeEEEEEEECCeEEEEEEeeCCc
Confidence            3344444 6999887777788999986543  33567789999999864 443   456667777888999999999 77


Q ss_pred             CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 013941          178 SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE  212 (433)
Q Consensus       178 ~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  212 (433)
                      ++.+.....      ......+..++...|..||.
T Consensus       106 ~~~~~~~~~------~~~~~~~~~~l~~~L~~Lh~  134 (272)
T 4gkh_A          106 TAFQVLEEY------PDSGENIVDALAVFLRRLHS  134 (272)
T ss_dssp             EHHHHHHHC------GGGHHHHHHHHHHHHHHHHT
T ss_pred             cccccccCC------HHHHHHHHHHHHHHHHHhcC
Confidence            777765432      12234456666677777764

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=98.33  E-value=3e-06  Score=81.64  Aligned_cols=76  Identities=21%  Similarity=0.230  Sum_probs=47.9

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccch--------hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+.||.|..+.||++....+++.|+||......        ...+....|.++++.+....  ...+.+++.+  +.+..
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~--~~~vP~~~~~--d~~~~  110 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHV--PHLVPRVFYS--DTEMA  110 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTC--GGGSCCEEEE--ETTTT
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhC--CCCcCeEEEE--cCCcc
Confidence            568999999999999866667889999864321        12245677999999886531  1122344432  23445


Q ss_pred             EEEEccCC
Q 013941          169 CIVFEKLG  176 (433)
Q Consensus       169 ~lv~e~~~  176 (433)
                      ++|||++.
T Consensus       111 ~lvmE~l~  118 (397)
T 2olc_A          111 VTVMEDLS  118 (397)
T ss_dssp             EEEECCCT
T ss_pred             EEEEEeCC
Confidence            89999993

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=98.23  E-value=1.4e-05  Score=75.11  Aligned_cols=77  Identities=12%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEec-c--eeccCCeEEEEEc
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR-N--WFDYRNHICIVFE  173 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~-~--~~~~~~~~~lv~e  173 (433)
                      ++.|+.|..+.||++... + ..+++|+.....   .....|+.+++.|...++..+.++... +  +....+..++||+
T Consensus        37 ~~~l~gG~~n~~~~v~~~-~-~~~vlk~~~~~~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~  111 (346)
T 2q83_A           37 IDVIQGNQMALVWKVHTD-S-GAVCLKRIHRPE---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD  111 (346)
T ss_dssp             EEECC----CEEEEEEET-T-EEEEEEEECSCH---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred             eeeccccccCcEEEEEeC-C-CCEEEEecCCCH---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence            345677788999999753 3 358999987532   344567888888876665334433321 1  1234677899999


Q ss_pred             cC-CCC
Q 013941          174 KL-GPS  178 (433)
Q Consensus       174 ~~-~~~  178 (433)
                      |+ |.+
T Consensus       112 ~i~G~~  117 (346)
T 2q83_A          112 WIEGRP  117 (346)
T ss_dssp             CCCCBC
T ss_pred             eecCcc
Confidence            99 543

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.17  E-value=3.9e-06  Score=79.54  Aligned_cols=82  Identities=7%  Similarity=0.064  Sum_probs=54.2

Q ss_pred             EEeccc-cccccEEEEEEEec--C----CCcEEEEEEeccch---h-hHHHHHHHHHHHHHHHhC-CCCCcceeEeccee
Q 013941           95 RILSKM-GEGTFGQVVECFDN--E----KKELVAIKIVRSIN---K-YREAAMIEIDVLQRLARH-DIGGTRCVQIRNWF  162 (433)
Q Consensus        95 ~~~~~l-g~G~~g~V~~~~~~--~----~~~~vavK~~~~~~---~-~~~~~~~E~~~l~~l~~~-~i~~~~~v~~~~~~  162 (433)
                      ...+.| +.|..+.+|++...  .    +++.+++|+.....   . ....+.+|+.+++.+... ++..|   +++.+.
T Consensus        23 ~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP---~v~~~~   99 (357)
T 3ats_A           23 TVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVP---RVRWIE   99 (357)
T ss_dssp             EEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCC---CEEEEE
T ss_pred             EEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCC---cEEEEc
Confidence            345778 88999999988643  1    25678999865432   1 124577899999999865 54333   444444


Q ss_pred             ccC---CeEEEEEccC-CCCH
Q 013941          163 DYR---NHICIVFEKL-GPSL  179 (433)
Q Consensus       163 ~~~---~~~~lv~e~~-~~~L  179 (433)
                      .+.   +..++|||++ |.++
T Consensus       100 ~~~~~~g~~~~v~e~l~G~~l  120 (357)
T 3ats_A          100 TTGDVLGTPFFLMDYVEGVVP  120 (357)
T ss_dssp             CSSTTTSSCEEEEECCCCBCC
T ss_pred             cCCCccCCceEEEEecCCCCh
Confidence            443   4568999999 5443

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.83  E-value=6.3e-05  Score=69.37  Aligned_cols=69  Identities=10%  Similarity=-0.019  Sum_probs=46.2

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-  175 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-  175 (433)
                      ++.|+.|....+|++      +.+++|+............+|+.+++.+...++. |.++   ...  .+.-++|+||+ 
T Consensus        23 i~~l~gG~tN~~~~~------~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~-P~~~---~~~--~~~~~~v~e~i~   90 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA------GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVS-PEVL---HVD--PATGVMVTRYIA   90 (301)
T ss_dssp             CEEEESCSSEEEEEE------TTEEEEEECC----CCCHHHHHHHHHHHHHTTSS-CCEE---EEC--TTTCCEEEECCT
T ss_pred             eeEcCCcccccccee------eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCC-CceE---EEE--CCCCEEEEeecC
Confidence            578889999999998      4489998764322222235699999999888774 4443   332  22346899999 


Q ss_pred             CC
Q 013941          176 GP  177 (433)
Q Consensus       176 ~~  177 (433)
                      +|
T Consensus        91 ~g   92 (301)
T 3dxq_A           91 GA   92 (301)
T ss_dssp             TC
T ss_pred             CC
Confidence            65

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.81  E-value=0.00016  Score=66.94  Aligned_cols=77  Identities=21%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      -++.|+.|....+|+...  ++..+++|+....  ....+..|...|+.|....  ...+.+++.+....+..++|||++
T Consensus        40 ~~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~--~~~~~~~E~~~L~~L~~~~--~v~VP~vl~~~~~~g~~~lvme~l  113 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLIND--EVQTVFVKINERS--YRSMFRAEADQLALLAKTN--SINVPLVYGIGNSQGHSFLLLEAL  113 (312)
T ss_dssp             EEEEECCSSSSEEEEEES--SSCEEEEEEEEGG--GHHHHHHHHHHHHHHHHTT--SSBCCCEEEEEECSSEEEEEEECC
T ss_pred             eeEEeCCccceeeeEEEE--CCCeEEEEeCCcc--cHHHHHHHHHHHHHHHhhC--CCCcceEEEEeecCCceEEEEEec
Confidence            357789999999999974  4667899987543  3466788999999997652  123456666666678899999999


Q ss_pred             -CCC
Q 013941          176 -GPS  178 (433)
Q Consensus       176 -~~~  178 (433)
                       |..
T Consensus       114 ~G~~  117 (312)
T 3jr1_A          114 NKSK  117 (312)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence             654

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.64  E-value=0.0002  Score=69.39  Aligned_cols=76  Identities=17%  Similarity=0.236  Sum_probs=43.1

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEecc-----chh---hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVRS-----INK---YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-----~~~---~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      -++.||.|..+.||++..  +++.++||....     ...   .......|.+++..+....  ...+.+++.+.  .+.
T Consensus        38 ~i~~l~~G~~n~vyrv~~--~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~--~~~vP~v~~~~--~~~  111 (420)
T 2pyw_A           38 VIKEVGDGNLNFVFIVVG--SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLS--PDHVPEVYHFD--RTM  111 (420)
T ss_dssp             EEEECCCSSSCEEEEEEC--SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHS--GGGSCCEEEEE--TTT
T ss_pred             EEEEccCCCcEEEEEEEc--CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhC--CCCCCeEEEEC--CCc
Confidence            356789999999999963  467799994221     111   0122333444444443211  11224444443  456


Q ss_pred             EEEEEccC-CC
Q 013941          168 ICIVFEKL-GP  177 (433)
Q Consensus       168 ~~lv~e~~-~~  177 (433)
                      .++|||++ .+
T Consensus       112 ~~lv~e~l~~g  122 (420)
T 2pyw_A          112 ALIGMRYLEPP  122 (420)
T ss_dssp             TEEEECCCCTT
T ss_pred             cEEEEeecCCc
Confidence            78999999 76

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.60  E-value=0.00064  Score=58.35  Aligned_cols=97  Identities=13%  Similarity=0.003  Sum_probs=61.0

Q ss_pred             CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcccCCCC
Q 013941          178 SLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK  256 (433)
Q Consensus       178 ~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~  256 (433)
                      +|.++|...+ ..+++++++.++.|.+.+|.-+-. +.-..+=+.|..|++..+|.+...                    
T Consensus        34 SL~eIL~~~~-~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~--------------------   92 (229)
T 2yle_A           34 SLEEILRLYN-QPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLA--------------------   92 (229)
T ss_dssp             EHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEEC--------------------
T ss_pred             cHHHHHHHcC-CCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceecc--------------------
Confidence            7999998765 589999999999999999887621 121123344688888777754321                    


Q ss_pred             CCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh
Q 013941          257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS  313 (433)
Q Consensus       257 ~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  313 (433)
                             + +.+.         .....+.|||... ...+.+.=|||||++||..+-
T Consensus        93 -------~-~~s~---------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A           93 -------P-AADD---------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             -------C-C---------------------CCSS-SSSCHHHHHHHHHHHHHHHHT
T ss_pred             -------c-cccc---------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhh
Confidence                   1 0000         1122466787753 345678899999999998874

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.56  E-value=0.00063  Score=63.10  Aligned_cols=81  Identities=10%  Similarity=0.064  Sum_probs=49.9

Q ss_pred             EEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecc---eeccCCeEEEE
Q 013941           95 RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRN---WFDYRNHICIV  171 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~---~~~~~~~~~lv  171 (433)
                      .-++.|+.|....+|++... ++ .+++|+.... ...+.+..|+.++..+...++..|.++...+   +....+..+++
T Consensus        25 ~~~~~i~~G~~n~~~~v~~~-~g-~~vlk~~~~~-~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l  101 (322)
T 2ppq_A           25 TSYKGIAEGVENSNFLLHTT-KD-PLILTLYEKR-VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAAL  101 (322)
T ss_dssp             EEEEEECC---EEEEEEEES-SC-CEEEEEECC----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEE
T ss_pred             eEeeccCCCcccceEEEEeC-Cc-cEEEEEeCCC-CCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEE
Confidence            34567888988999999753 33 5889988652 1224566799999999887764444443211   11234667999


Q ss_pred             EccC-CCC
Q 013941          172 FEKL-GPS  178 (433)
Q Consensus       172 ~e~~-~~~  178 (433)
                      |+++ |..
T Consensus       102 ~~~l~G~~  109 (322)
T 2ppq_A          102 ISFLEGMW  109 (322)
T ss_dssp             EECCCCBC
T ss_pred             EEeCCCcC
Confidence            9999 543

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=97.56  E-value=0.00068  Score=63.06  Aligned_cols=77  Identities=14%  Similarity=0.177  Sum_probs=50.0

Q ss_pred             cccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecc--eeccCCeEEEEEccCC
Q 013941           99 KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRN--WFDYRNHICIVFEKLG  176 (433)
Q Consensus        99 ~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~--~~~~~~~~~lv~e~~~  176 (433)
                      .|+ |....||++.. .+|+.+++|+.+........+..|..+++.+...++..+.++..-+  +...++..++||+++.
T Consensus        33 ~l~-g~~n~~y~v~~-~~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~  110 (328)
T 1zyl_A           33 PLN-SYENRVYQFQD-EDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVG  110 (328)
T ss_dssp             EEC-CSSSEEEEECC-TTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCC
T ss_pred             eec-CcccceEEEEc-CCCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecC
Confidence            455 77788998864 3466799999864333345677899999999877653333332211  1223567789999994


Q ss_pred             C
Q 013941          177 P  177 (433)
Q Consensus       177 ~  177 (433)
                      |
T Consensus       111 G  111 (328)
T 1zyl_A          111 G  111 (328)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.43  E-value=0.00065  Score=62.00  Aligned_cols=77  Identities=10%  Similarity=0.006  Sum_probs=53.5

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhC-CCCCcceeEecceeccCCeEEE
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARH-DIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~-~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      ...-++.+|.|..+.||+++. .+|+.|++|+..... .....+..|+..|+.|... .+..|.+   +.+.    .-++
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l-~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v---~~~~----~~~l   87 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVEL-ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQV---AGWD----DRTL   87 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEE-TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCE---EEEE----TTEE
T ss_pred             CeEEEEecCCCCCeEEEEEEE-CCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceE---Eecc----CceE
Confidence            456678999999999999974 578889999865432 2234577899999999654 3433333   3322    2378


Q ss_pred             EEccC-CC
Q 013941          171 VFEKL-GP  177 (433)
Q Consensus       171 v~e~~-~~  177 (433)
                      |||++ ++
T Consensus        88 v~e~l~~~   95 (288)
T 3f7w_A           88 AMEWVDER   95 (288)
T ss_dssp             EEECCCCC
T ss_pred             EEEeeccc
Confidence            99998 44

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=97.40  E-value=0.00033  Score=66.54  Aligned_cols=74  Identities=14%  Similarity=0.174  Sum_probs=46.2

Q ss_pred             eccccccccEEEEEEEecC-------CCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           97 LSKMGEGTFGQVVECFDNE-------KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++.|..|-...+|++....       +++.|++|+............+|..+++.+...++.    .+++..+.+    .
T Consensus        55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~----P~ll~~~~~----g  126 (379)
T 3feg_A           55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLG----PQLYGVFPE----G  126 (379)
T ss_dssp             CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSS----CCEEEEETT----E
T ss_pred             EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCC----CeEEEEcCC----c
Confidence            3567778888899988642       357899998644323345567899999999988773    344455543    2


Q ss_pred             EEEccC-CCC
Q 013941          170 IVFEKL-GPS  178 (433)
Q Consensus       170 lv~e~~-~~~  178 (433)
                      +||||+ |.+
T Consensus       127 ~v~e~i~G~~  136 (379)
T 3feg_A          127 RLEQYIPSRP  136 (379)
T ss_dssp             EEEECCSEEE
T ss_pred             cEEEEecCcc
Confidence            999999 544

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=97.39  E-value=0.0009  Score=62.44  Aligned_cols=79  Identities=10%  Similarity=0.027  Sum_probs=41.9

Q ss_pred             eccccccccEE-EEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941           97 LSKMGEGTFGQ-VVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus        97 ~~~lg~G~~g~-V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      ++.|+.|.... +|+... .+++.+++|......  ......|+.+++.+...++..|.++.   +....+  ++|||++
T Consensus        23 ~~~l~gg~s~~~~~r~~~-~~~~~~vlk~~~~~~--~~~~~~e~~~l~~L~~~g~~vP~v~~---~d~~~g--~ll~e~l   94 (333)
T 3csv_A           23 RTPLAGDASSRRYQRLRS-PTGAKAVLMDWSPEE--GGDTQPFVDLAQYLRNLDISAPEIYA---EEHARG--LLLIEDL   94 (333)
T ss_dssp             ECC--------CCEEEEC-TTCCEEEEEECCTTT--TCCSHHHHHHHHHHHHTTCBCCCEEE---EETTTT--EEEECCC
T ss_pred             eeECCCCCCCceEEEEEc-CCCCeEEEEECCCCC--CccccHHHHHHHHHHhCCCCCCceee---ecCCCC--EEEEeeC
Confidence            34565555444 667653 235667788654321  13355688999999877664444443   322333  6899999


Q ss_pred             -CCCHHHHH
Q 013941          176 -GPSLYDFL  183 (433)
Q Consensus       176 -~~~L~~~l  183 (433)
                       +.++.+.+
T Consensus        95 ~~~~l~~~l  103 (333)
T 3csv_A           95 GDALFTEVI  103 (333)
T ss_dssp             CSCBHHHHH
T ss_pred             CCcchHHHh
Confidence             55665444

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=97.26  E-value=0.00067  Score=64.36  Aligned_cols=73  Identities=19%  Similarity=0.196  Sum_probs=44.7

Q ss_pred             eccccccccEEEEEEEecC--------CCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           97 LSKMGEGTFGQVVECFDNE--------KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~--------~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++.|+.|....+|++....        .++.+++|+.............|..+++.+...++ .|.   ++..+.  +  
T Consensus        38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~-~P~---~~~~~~--~--  109 (369)
T 3c5i_A           38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKI-APQ---LLNTFN--G--  109 (369)
T ss_dssp             EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTS-SCC---EEEEET--T--
T ss_pred             EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCC-CCc---eEEecC--C--
Confidence            4577888888999997543        13678999876433222224679999999987775 333   333332  2  


Q ss_pred             EEEEccC-CC
Q 013941          169 CIVFEKL-GP  177 (433)
Q Consensus       169 ~lv~e~~-~~  177 (433)
                      ++||||+ |.
T Consensus       110 ~~v~e~i~G~  119 (369)
T 3c5i_A          110 GRIEEWLYGD  119 (369)
T ss_dssp             EEEEECCCSE
T ss_pred             cEEEEEecCC
Confidence            6899999 53

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=97.06  E-value=0.0049  Score=57.60  Aligned_cols=72  Identities=15%  Similarity=0.150  Sum_probs=46.5

Q ss_pred             cccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCC-CcceeEec-c--eeccCCeEEEEEccC-
Q 013941          101 GEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG-GTRCVQIR-N--WFDYRNHICIVFEKL-  175 (433)
Q Consensus       101 g~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~-~~~~v~~~-~--~~~~~~~~~lv~e~~-  175 (433)
                      |.|....||++.. .+| .+++|+.....     ...|+.+++.|...++. .+..+... +  +....+..++||+|+ 
T Consensus        32 G~g~~N~vy~v~~-~~g-~~vLK~~~~~~-----~~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~  104 (339)
T 3i1a_A           32 GADTNAFAYQADS-ESK-SYFIKLKYGYH-----DEINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIH  104 (339)
T ss_dssp             TSCSSCEEEEEEC-SSC-EEEEEEEECSS-----CCHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCC
T ss_pred             cCccccceEEEEe-CCC-CEEEEEecCcc-----chHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccC
Confidence            4444789999974 344 79999876533     24688889888877664 23333221 1  123357889999999 


Q ss_pred             CCCH
Q 013941          176 GPSL  179 (433)
Q Consensus       176 ~~~L  179 (433)
                      |..+
T Consensus       105 G~~~  108 (339)
T 3i1a_A          105 APNG  108 (339)
T ss_dssp             CCBT
T ss_pred             CCcC
Confidence            6544

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.05  E-value=0.0065  Score=58.75  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             EeccccccccEEEEEEEecC-------CCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           96 ILSKMGEGTFGQVVECFDNE-------KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      -++.|+.|....||++....       +++.+++|+.... ...+.+..|..+++.+...++. |   ++++.+.+    
T Consensus        77 ~v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~-~~~~~li~E~~~l~~L~~~g~~-P---~l~~~~~~----  147 (429)
T 1nw1_A           77 RISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP-ETESHLVAESVIFTLLSERHLG-P---KLYGIFSG----  147 (429)
T ss_dssp             EEEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC-CCHHHHHHHHHHHHHHHHTTSS-S---CEEEEETT----
T ss_pred             EEEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC-CcHHHHHHHHHHHHHHHhCCCC-C---cEEEEeCC----
Confidence            35678889999999998643       2578999998432 1114556899999999887763 3   34444443    


Q ss_pred             EEEEccC
Q 013941          169 CIVFEKL  175 (433)
Q Consensus       169 ~lv~e~~  175 (433)
                      .+|+||+
T Consensus       148 g~v~e~l  154 (429)
T 1nw1_A          148 GRLEEYI  154 (429)
T ss_dssp             EEEECCC
T ss_pred             CEEEEEe
Confidence            2899998

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.80  E-value=0.01  Score=57.79  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=48.0

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      -++.|+.|-...+|++.....+..+++|+........-...+|..++..|...++.    .++++.+..    .+||||+
T Consensus       112 ~i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~----P~ll~~~~~----G~v~e~I  183 (458)
T 2qg7_A          112 EFQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIA----KKIYVFFTN----GRIEEFM  183 (458)
T ss_dssp             EEEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSB----CCEEEEETT----EEEEECC
T ss_pred             EEEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCC----CCEEEEeCC----eEEEEee
Confidence            35678889999999998654457899998754221111125799999999877662    344555532    2599998


Q ss_pred             -CCC
Q 013941          176 -GPS  178 (433)
Q Consensus       176 -~~~  178 (433)
                       |.+
T Consensus       184 ~G~~  187 (458)
T 2qg7_A          184 DGYA  187 (458)
T ss_dssp             CSEE
T ss_pred             CCcc
Confidence             533

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=96.02  E-value=0.014  Score=56.09  Aligned_cols=75  Identities=16%  Similarity=0.119  Sum_probs=49.2

Q ss_pred             EeccccccccEEEEEEEecCC-------CcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           96 ILSKMGEGTFGQVVECFDNEK-------KELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      -++.|..|-...+|++.....       ++.|++|+........-...+|..+++.+...++ .|.   +++.+.  +  
T Consensus        74 ~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~~gi-~P~---l~~~~~--~--  145 (424)
T 3mes_A           74 EVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNINI-APN---IIADFP--E--  145 (424)
T ss_dssp             EEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHHTTS-SCC---EEEEET--T--
T ss_pred             EEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHhcCC-CCC---EEEEcC--C--
Confidence            346677788889999986421       5779999875432222234679999999988776 233   333332  2  


Q ss_pred             EEEEccC-CCC
Q 013941          169 CIVFEKL-GPS  178 (433)
Q Consensus       169 ~lv~e~~-~~~  178 (433)
                      ++||||+ |.+
T Consensus       146 ~~I~efI~G~~  156 (424)
T 3mes_A          146 GRIEEFIDGEP  156 (424)
T ss_dssp             EEEEECCCSEE
T ss_pred             CEEEEEeCCcc
Confidence            6899999 544

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=95.31  E-value=0.088  Score=50.25  Aligned_cols=71  Identities=17%  Similarity=0.226  Sum_probs=41.0

Q ss_pred             eccccccccEEEEEEEecC-------CCcEEEEEEeccchh-------------------hHHHHHHHHHHHHHHHhCCC
Q 013941           97 LSKMGEGTFGQVVECFDNE-------KKELVAIKIVRSINK-------------------YREAAMIEIDVLQRLARHDI  150 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~-------------------~~~~~~~E~~~l~~l~~~~i  150 (433)
                      ++.|+-|-.-.+|++....       ..+.|++++......                   .......|..+...+...++
T Consensus        57 v~~lsGG~SN~~y~v~~~~~~~~~~~~~~~~llRi~g~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~ls~~g~  136 (401)
T 3g15_A           57 ISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSL  136 (401)
T ss_dssp             EEEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTS
T ss_pred             EEEeCCccccceEEEEECCCCcccccCCCeEEEEeCCCCccchhhhhHHHHHHHHHHhccCCCCCcchhHHHHHHHhCCC
Confidence            4677778888999998543       235688887642110                   00112246667777776665


Q ss_pred             CCcceeEecceeccCCeEEEEEccC
Q 013941          151 GGTRCVQIRNWFDYRNHICIVFEKL  175 (433)
Q Consensus       151 ~~~~~v~~~~~~~~~~~~~lv~e~~  175 (433)
                      +    .++++.+..    .+|++|+
T Consensus       137 ~----p~l~~~f~~----g~i~e~i  153 (401)
T 3g15_A          137 G----PKLYGIFPQ----GRLEQFI  153 (401)
T ss_dssp             S----CCEEEEETT----EEEEECC
T ss_pred             C----CEEEEEECC----cEEEEec
Confidence            3    345555543    3566776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	433
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-55
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-51
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-50
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	5e-50
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-49
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-49
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	4e-49
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-48
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-48
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-48
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-47
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-47
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-46
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	7e-46
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-45
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	5e-45
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-44
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-44
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-44
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	6e-44
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	6e-44
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-43
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-42
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	5e-42
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-41
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-41
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-40
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-39
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	3e-38
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-38
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	4e-38
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-37
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	9e-37
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-35
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-35
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	1e-34
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	5e-34
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-33
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-32
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-31
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	4e-31
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-30
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-29
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-28
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-28
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	4e-28
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	6e-28
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	8e-28
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-27
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-27
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	5e-27
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-26
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-26
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	3e-26
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-25
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-25
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-25
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-24
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-24
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-24
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-23
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-23
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-13

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  183 bits (466), Expect = 4e-55
 Identities = 68/337 (20%), Positives = 117/337 (34%), Gaps = 45/337 (13%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHDI 150
            +  +S++G G  G V +        ++A K++        R   + E+ VL        
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC-NSP- 64

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
                V     F     I I  E + G SL   L+K      P  ++ ++   +++ + +
Sbjct: 65  ---YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTY 119

Query: 210 MHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           + E  +++H D+KP NIL+                 +  G           IKL DFG +
Sbjct: 120 LREKHKIMHRDVKPSNILV-----------------NSRGE----------IKLCDFGVS 152

Query: 269 TFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                  +   V TR Y +PE + G  ++   D+WS+G  LVE+  G       +  E  
Sbjct: 153 GQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELE 212

Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
            M    +         R           G     P                +LP+ +   
Sbjct: 213 LMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSL 272

Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                 +  D +   L  +PAER   ++ + H F  R
Sbjct: 273 ------EFQDFVNKCLIKNPAERADLKQLMVHAFIKR 303

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  174 bits (441), Expect = 1e-51
 Identities = 86/344 (25%), Positives = 142/344 (41%), Gaps = 56/344 (16%)

Query: 93  RYRILSKMGEGTFGQVVECFDNE-KKELVAIKIVRSIN---KYREAAMIEIDVLQRLARH 148
           +Y  ++++GEG +G+V +  D +     VA+K VR          + + E+ VL+ L   
Sbjct: 8   QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETF 67

Query: 149 D---IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           +   +     V   +  D    + +VFE +   L  +L K      P + ++++  QLL 
Sbjct: 68  EHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLR 127

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            + F+H  R++H DLKP+NIL+ S+  +K+ D                            
Sbjct: 128 GLDFLHSHRVVHRDLKPQNILVTSSGQIKLAD-------------------------FGL 162

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                     + VV T  YRAPEV+L   +  P DLWSVGCI  E+   + LF+   +++
Sbjct: 163 ARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD 222

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            L  +  V+G        R      + F   +                            
Sbjct: 223 QLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIE----------------------- 259

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC 429
           + V        DLL   L ++PA+R+ A  AL HP+F +D+ RC
Sbjct: 260 KFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF-QDLERC 302

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  171 bits (435), Expect = 2e-50
 Identities = 81/348 (23%), Positives = 140/348 (40%), Gaps = 46/348 (13%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLA 146
           ++ PRY  LS +GEG +G V   +DN  K  VAIK +       Y +  + EI +L R  
Sbjct: 5   DVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFR 64

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
             +I G   +      +    + +V   +G  LY  L+    +    D +     Q+L  
Sbjct: 65  HENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKT---QHLSNDHICYFLYQILRG 121

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H   ++H DLKP N+LL +   +K+ D+     +  D  +                
Sbjct: 122 LKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH---------------- 165

Query: 267 STTFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                    +  V+TR YRAPE++L   G+    D+WSVGCIL E+ S   +F     L+
Sbjct: 166 -----TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD 220

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            L  +  +LG                        D       +     +    +      
Sbjct: 221 QLNHILGILGSPSQE-------------------DLNCIINLKARNYLLSLPHKNKVPWN 261

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRCGFPL 433
           +   ++    +DLL  +L ++P +R++  +AL HP+  +       P+
Sbjct: 262 RLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPI 309

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (432), Expect = 5e-50
 Identities = 70/343 (20%), Positives = 134/343 (39%), Gaps = 82/343 (23%)

Query: 93  RYRILSKM-GEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIG 151
            Y++ S++ G G  G+V++ F+   +E  A+K+++   K R     E+++  R ++    
Sbjct: 12  DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRASQCP-- 65

Query: 152 GTRCVQIRNWFDY----RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
               V+I + ++     R  + IV E L G  L+  ++    ++F      E+ + + E+
Sbjct: 66  --HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEA 123

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H + + H D+KPEN+L  S     +                        +KL DFG
Sbjct: 124 IQYLHSINIAHRDVKPENLLYTSKRPNAI------------------------LKLTDFG 159

Query: 267 STTF--EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
                  H   +    T +Y APEV+    ++  CD+WS+G I+  L  G   F ++  L
Sbjct: 160 FAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL 219

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
                M+                                        R        PN  
Sbjct: 220 AISPGMKT---------------------------------------RIRMGQYEFPNPE 240

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR 427
              V     ++  L++ LL+ +P +R+   E + HP+  +  +
Sbjct: 241 WSEVSE---EVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTK 280

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  169 bits (429), Expect = 2e-49
 Identities = 95/356 (26%), Positives = 155/356 (43%), Gaps = 47/356 (13%)

Query: 86  IGENLTP-RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQR 144
            GE     RY ++ K+G G F  V    D      VA+KIVR    Y EAA  EI +LQR
Sbjct: 6   KGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQR 65

Query: 145 LARHDIGGTRCVQIRN----------WFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPID 194
           +   D      +   +                H+ +VFE LG +L   ++K  +R  P+ 
Sbjct: 66  VNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLI 125

Query: 195 LVRELGRQLLESVAFMHELR-LIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
            V+++ +QLL  + +MH    +IHTD+KPEN+L+   +                      
Sbjct: 126 YVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSP-------------------- 165

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                 IK+ D G+  +  + ++  + TR YR+PEV+LG  W    D+WS  C++ EL +
Sbjct: 166 -ENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT 224

Query: 314 GEALFQTHE------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATS 367
           G+ LF+  E      + +H+A +  +LG LP +++         +  RG   +       
Sbjct: 225 GDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISK---- 280

Query: 368 RDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                  W L  +     +     A ++ D L  +L+ DP +R  A   + HP+  
Sbjct: 281 ----LKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLK 332

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (426), Expect = 2e-49
 Identities = 74/340 (21%), Positives = 141/340 (41%), Gaps = 46/340 (13%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD 149
           +Y  L+K+G+GTFG+V +    +  + VA+K V   N    +   A+ EI +LQ L   +
Sbjct: 11  KYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN 70

Query: 150 IG---GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
           +         +   +   +  I +VF+     L   L  N    F +  ++ + + LL  
Sbjct: 71  VVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAG-LLSNVLVKFTLSEIKRVMQMLLNG 129

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++H  +++H D+K  N+L+     +K+ D+                      +     
Sbjct: 130 LYYIHRNKILHRDMKAANVLITRDGVLKLADFGL-------------------ARAFSLA 170

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
             +  ++  + VV T  YR PE++LG   +  P DLW  GCI+ E+ +   + Q +    
Sbjct: 171 KNSQPNRYTNRVV-TLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH 229

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            LA++ ++ G +   +    D           +                    ++ + + 
Sbjct: 230 QLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKR----------------KVKDRLK 273

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
            +V       +DL+  LL  DPA+R+ + +AL H FF  D
Sbjct: 274 AYVRDP--YALDLIDKLLVLDPAQRIDSDDALNHDFFWSD 311

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  168 bits (427), Expect = 4e-49
 Identities = 70/337 (20%), Positives = 124/337 (36%), Gaps = 81/337 (24%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIG 151
            Y IL ++G G FG V  C +     +   K + +     +     EI ++ +L  H   
Sbjct: 30  YYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQL-HHP-- 86

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
             + + + + F+ +  + ++ E L G  L+D +    Y+      V    RQ  E +  M
Sbjct: 87  --KLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYK-MSEAEVINYMRQACEGLKHM 143

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           HE  ++H D+KPENI+                             K+S++K+IDFG  T 
Sbjct: 144 HEHSIVHLDIKPENIMC-------------------------ETKKASSVKIIDFGLATK 178

Query: 271 EHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
            + D       +T  + APE++      +  D+W++G +   L SG + F   ++LE L 
Sbjct: 179 LNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQ 238

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            ++R                                                        
Sbjct: 239 NVKRCDWEFDEDAFSSVSP----------------------------------------- 257

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                +  D ++ LL+ +P +RL   +AL HP+   D
Sbjct: 258 -----EAKDFIKNLLQKEPRKRLTVHDALEHPWLKGD 289

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (416), Expect = 2e-48
 Identities = 68/339 (20%), Positives = 120/339 (35%), Gaps = 90/339 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARH 148
            + I   +G+G FG V    + + K ++A+K++                E+++   L   
Sbjct: 7   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 66

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           +I     +++  +F     + ++ E     ++Y  L+K     F          +L  ++
Sbjct: 67  NI-----LRLYGYFHDATRVYLILEYAPLGTVYRELQK--LSKFDEQRTATYITELANAL 119

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
           ++ H  R+IH D+KPEN+LL SA  +K                           + DFG 
Sbjct: 120 SYCHSKRVIHRDIKPENLLLGSAGELK---------------------------IADFGW 152

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
           S        + +  T  Y  PE+I G   +   DLWS+G +  E   G+  F+ +   E 
Sbjct: 153 SVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQET 212

Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
              + RV    P                                                
Sbjct: 213 YKRISRVEFTFP------------------------------------------------ 224

Query: 387 HVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
             D       DL+  LL+++P++R   RE L HP+ T +
Sbjct: 225 --DFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITAN 261

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  166 bits (420), Expect = 4e-48
 Identities = 76/337 (22%), Positives = 117/337 (34%), Gaps = 81/337 (24%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIG 151
            Y I  ++G G FG V    +       A K V + +   +E    EI  +  L RH   
Sbjct: 27  HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL-RHP-- 83

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               V + + F+  N + +++E + G  L++ +    +     D   E  RQ+ + +  M
Sbjct: 84  --TLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHM 140

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           HE   +H DLKPENI+  +                          +S+ +KLIDFG T  
Sbjct: 141 HENNYVHLDLKPENIMFTT-------------------------KRSNELKLIDFGLTAH 175

Query: 271 --EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
               Q       T  + APEV  G    Y  D+WSVG +   L SG + F    + E L 
Sbjct: 176 LDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLR 235

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            ++     +                                                   
Sbjct: 236 NVKSCDWNMDDSAFSGISE----------------------------------------- 254

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                D  D ++ LL  DP  R+   +AL HP+ T  
Sbjct: 255 -----DGKDFIRKLLLADPNTRMTIHQALEHPWLTPG 286

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (413), Expect = 8e-48
 Identities = 71/346 (20%), Positives = 131/346 (37%), Gaps = 88/346 (25%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLAR 147
           N    + I+ ++G+G FG+V +  + E   L A K++ + + +  E  M+EID+L     
Sbjct: 9   NPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDH 68

Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
            +I     V++ + F Y N++ I+ E       D +     R      ++ + +Q L+++
Sbjct: 69  PNI-----VKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDAL 123

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++H+ ++IH DLK  NIL                  + DG           IKL DFG 
Sbjct: 124 NYLHDNKIIHRDLKAGNILF-----------------TLDGD----------IKLADFGV 156

Query: 268 TTFEHQDHSY---VVSTRHYRAPEVILGL-----GWNYPCDLWSVGCILVELCSGEALFQ 319
           +    +        + T ++ APEV++        ++Y  D+WS+G  L+E+   E    
Sbjct: 157 SAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHH 216

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
                                                            + MR + K+ +
Sbjct: 217 -----------------------------------------------ELNPMRVLLKIAK 229

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                +      + +  D L+  L  +   R    + L+HPF T D
Sbjct: 230 SEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVD 275

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (415), Expect = 1e-47
 Identities = 59/345 (17%), Positives = 116/345 (33%), Gaps = 80/345 (23%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLAR 147
           + L  +Y I   +G G FG V  C +   K+    K V+     +     EI +L     
Sbjct: 1   KELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARH 60

Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
            +I     + +   F+    + ++FE + G  +++ +  +++       +     Q+ E+
Sbjct: 61  RNI-----LHLHESFESMEELVMIFEFISGLDIFERINTSAFE-LNEREIVSYVHQVCEA 114

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + F+H   + H D++PENI+  +     +                         K+I+FG
Sbjct: 115 LQFLHSHNIGHFDIRPENIIYQTRRSSTI-------------------------KIIEFG 149

Query: 267 STTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
                    ++  + +   Y APEV      +   D+WS+G ++  L SG   F    N 
Sbjct: 150 QARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ 209

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           + +  +                                                      
Sbjct: 210 QIIENIMNAEYTFDEEAFKEISI------------------------------------- 232

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRRC 429
                    + +D +  LL  +   R+ A EAL+HP+  + + R 
Sbjct: 233 ---------EAMDFVDRLLVKERKSRMTASEALQHPWLKQKIERV 268

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (412), Expect = 1e-47
 Identities = 88/334 (26%), Positives = 146/334 (43%), Gaps = 54/334 (16%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD 149
            ++ + K+GEGT+G V +  +    E+VA+K +R           A+ EI +L+ L   +
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     V++ +     N + +VFE L   L  F+  ++    P+ L++    QLL+ +AF
Sbjct: 63  I-----VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 117

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H  R++H DLKP+N+L+ +   +K+ D+                               
Sbjct: 118 CHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT------------------- 158

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                +++ V T  YRAPE++LG   ++   D+WS+GCI  E+ +  ALF     ++ L 
Sbjct: 159 -----YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLF 213

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            + R LG                       + WP   +  D   +  K  R      + V
Sbjct: 214 RIFRTLGTPD-------------------EVVWPGVTSMPDYKPSFPKWARQD--FSKVV 252

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                D   LL  +L YDP +R+ A+ AL HPFF
Sbjct: 253 PPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFF 286

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  159 bits (403), Expect = 2e-46
 Identities = 79/351 (22%), Positives = 127/351 (36%), Gaps = 98/351 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----------SINKYREAAMIEIDVL 142
            Y     +G G    V  C      +  A+KI+            + + REA + E+D+L
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGR 201
           ++++ H       +Q+++ ++      +VF+ +    L+D+L +    +      R++ R
Sbjct: 64  RKVSGHP----NIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK--VTLSEKETRKIMR 117

Query: 202 QLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIK 261
            LLE +  +H+L ++H DLKPENILL                   D +          IK
Sbjct: 118 ALLEVICALHKLNIVHRDLKPENILL-----------------DDDMN----------IK 150

Query: 262 LIDFGSTTFEHQDHSY--VVSTRHYRAPEVILG------LGWNYPCDLWSVGCILVELCS 313
           L DFG +           V  T  Y APE+I         G+    D+WS G I+  L +
Sbjct: 151 LTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLA 210

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
           G   F   + +  L M+                      F      D+ D          
Sbjct: 211 GSPPFWHRKQMLMLRMI----------------MSGNYQFGSPEWDDYSD---------- 244

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                                + DL+   L   P +R  A EAL HPFF +
Sbjct: 245 --------------------TVKDLVSRFLVVQPQKRYTAEEALAHPFFQQ 275

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (404), Expect = 7e-46
 Identities = 85/365 (23%), Positives = 140/365 (38%), Gaps = 72/365 (19%)

Query: 65  IPRTGSPPWRPDDKDGHYVFAIGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKI 124
           +   G  P RP +                Y     +G G+FG V +    +  ELVAIK 
Sbjct: 7   VATPGQGPDRPQEVS--------------YTDTKVIGNGSFGVVYQAKLCDSGELVAIKK 52

Query: 125 VRSINKYREAAMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFL 183
           V    +++     E+ ++++L   +I   R             ++ +V + +  ++Y   
Sbjct: 53  VLQDKRFKNR---ELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVA 109

Query: 184 RK--NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL 241
           R    + ++ P+  V+    QL  S+A++H   + H D+KP+N+LL              
Sbjct: 110 RHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLD------------- 156

Query: 242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTF--EHQDHSYVVSTRHYRAPEVILG-LGWNYP 298
                        P ++ +KL DFGS       + +   + +R+YRAPE+I G   +   
Sbjct: 157 -------------PDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSS 203

Query: 299 CDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLG-PLPHHMVIRADRRAEKYFRRGA 357
            D+WS GC+L EL  G+ +F     ++ L  + +VLG P    +        E  F +  
Sbjct: 204 IDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIK 263

Query: 358 RLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREAL 417
              W      R                         + I L   LL Y P  RL   EA 
Sbjct: 264 AHPWTKVFRPRTPP----------------------EAIALCSRLLEYTPTARLTPLEAC 301

Query: 418 RHPFF 422
            H FF
Sbjct: 302 AHSFF 306

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  156 bits (396), Expect = 5e-45
 Identities = 75/344 (21%), Positives = 132/344 (38%), Gaps = 82/344 (23%)

Query: 87  GENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQR 144
            E++   Y     +G G F +V+   D   ++LVAIK +   ++     +   EI VL +
Sbjct: 4   AEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHK 63

Query: 145 LARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQL 203
           + +H       V + + ++   H+ ++ + + G  L+D + +  +  +       L  Q+
Sbjct: 64  I-KHP----NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGF--YTERDASRLIFQV 116

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L++V ++H+L ++H DLKPEN+L  S                        L + S I + 
Sbjct: 117 LDAVKYLHDLGIVHRDLKPENLLYYS------------------------LDEDSKIMIS 152

Query: 264 DFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH 321
           DFG +  E           T  Y APEV+    ++   D WS+G I   L  G   F   
Sbjct: 153 DFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE 212

Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
            + +   + E++L             +AE  F      D  D                  
Sbjct: 213 NDAK---LFEQIL-------------KAEYEFDSPYWDDISD------------------ 238

Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                          D ++ L+  DP +R    +AL+HP+   D
Sbjct: 239 ------------SAKDFIRHLMEKDPEKRFTCEQALQHPWIAGD 270

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (394), Expect = 5e-45
 Identities = 85/341 (24%), Positives = 149/341 (43%), Gaps = 67/341 (19%)

Query: 96  ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK------YREAAMIEIDVLQRLARHD 149
            L  +GEG F  V +  D    ++VAIK ++  ++          A+ EI +LQ L+  +
Sbjct: 2   KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN 61

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     + + + F ++++I +VF+ +   L   ++ NS    P   ++      L+ + +
Sbjct: 62  I-----IGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTP-SHIKAYMLMTLQGLEY 115

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H+  ++H DLKP N+LL                  ++G           +KL DFG   
Sbjct: 116 LHQHWILHRDLKPNNLLL-----------------DENGV----------LKLADFGLAK 148

Query: 270 F---EHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                ++ +++ V TR YRAPE++ G   +    D+W+VGCIL EL           +L+
Sbjct: 149 SFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD 208

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            L  +   LG                         WPD      S+         P + +
Sbjct: 209 QLTRIFETLGTPTEE-------------------QWPDMC----SLPDYVTFKSFPGIPL 245

Query: 386 QHVDHSAG-DLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
            H+  +AG DL+DL+QGL  ++P  R+ A +AL+  +F+  
Sbjct: 246 HHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNR 286

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (391), Expect = 2e-44
 Identities = 68/334 (20%), Positives = 123/334 (36%), Gaps = 81/334 (24%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIG 151
           +Y    K+G+G  G V    D    + VAI+ +       +E  + EI V++   ++   
Sbjct: 21  KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN-KNP-- 77

Query: 152 GTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
               V   + +   + + +V E L G SL D + +          +  + R+ L+++ F+
Sbjct: 78  --NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCM---DEGQIAAVCRECLQALEFL 132

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
           H  ++IH D+K +NILL     VK+ D+ F ++ + + S                     
Sbjct: 133 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK-------------------- 172

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
                S +V T ++ APEV+    +    D+WS+G + +E+  GE  +     L  L ++
Sbjct: 173 ----RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLI 228

Query: 331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH 390
                P                      L  P+  ++                       
Sbjct: 229 ATNGTP---------------------ELQNPEKLSA----------------------- 244

Query: 391 SAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
                 D L   L  D  +R  A+E L+H F   
Sbjct: 245 ---IFRDFLNRCLDMDVEKRGSAKELLQHQFLKI 275

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (395), Expect = 2e-44
 Identities = 75/335 (22%), Positives = 127/335 (37%), Gaps = 41/335 (12%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD 149
           RY+ L  +G G  G V   +D      VAIK +        + + A  E+ +++ +   +
Sbjct: 18  RYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN 77

Query: 150 IGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I         +   +    + +V E +  +L   ++         + +  L  Q+L  + 
Sbjct: 78  IISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQME----LDHERMSYLLYQMLCGIK 133

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
            +H   +IH DLKP NI++ S   +K+ D                              T
Sbjct: 134 HLHSAGIIHRDLKPSNIVVKSDCTLKILD-------------------------FGLART 168

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                  +  V TR+YRAPEVILG+G+    D+WSVGCI+ E+   + LF   + ++   
Sbjct: 169 AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWN 228

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            +   LG      + +       Y     +                     L     +H 
Sbjct: 229 KVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPK--------LFPDSLFPADSEHN 280

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
              A    DLL  +L  DPA+R+   +AL+HP+  
Sbjct: 281 KLKASQARDLLSKMLVIDPAKRISVDDALQHPYIN 315

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (388), Expect = 3e-44
 Identities = 59/340 (17%), Positives = 119/340 (35%), Gaps = 80/340 (23%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLARHDI 150
            + ++  +GEG +G+V    +   +E VA+KIV         E    EI + + L  H+ 
Sbjct: 6   DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML-NHE- 63

Query: 151 GGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
                V+        N   +  E   G  L+D +  +     P    +    QL+  V +
Sbjct: 64  ---NVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVY 118

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H + + H D+KPEN+LL   + +K+ D+   +    +                      
Sbjct: 119 LHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNN--------------------- 157

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWN-YPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
              +  + +  T  Y APE++    ++  P D+WS G +L  + +GE             
Sbjct: 158 -RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGEL------------ 204

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
                                             D  +      + WK  +      + +
Sbjct: 205 --------------------------------PWDQPSDSCQEYSDWKEKKTYLNPWKKI 232

Query: 389 DHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR 428
           D      + LL  +L  +P+ R+   +  +  ++ + +++
Sbjct: 233 DS---APLALLHKILVENPSARITIPDIKKDRWYNKPLKK 269

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  153 bits (388), Expect = 6e-44
 Identities = 70/345 (20%), Positives = 122/345 (35%), Gaps = 89/345 (25%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQ 143
           ++    +  L ++G G+FG V    D    E+VAIK +       N+  +  + E+  LQ
Sbjct: 11  DDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQ 70

Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
           +L RH       +Q R  +   +   +V E    S  D L  +  +      +  +    
Sbjct: 71  KL-RHP----NTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGA 124

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           L+ +A++H   +IH D+K  NILL                 S+ G           +KL 
Sbjct: 125 LQGLAYLHSHNMIHRDVKAGNILL-----------------SEPGL----------VKLG 157

Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGLG---WNYPCDLWSVGCILVELCSGEALFQT 320
           DFGS +     +S+ V T ++ APEVIL +    ++   D+WS+G   +EL   +     
Sbjct: 158 DFGSASIMAPANSF-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN 216

Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
              +  L  + +   P                        W +                 
Sbjct: 217 MNAMSALYHIAQNESPALQSG------------------HWSE----------------- 241

Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD 425
                           + +   L+  P +R  +   L+H F  R+
Sbjct: 242 -------------YFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRE 273

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score =  154 bits (389), Expect = 6e-44
 Identities = 69/338 (20%), Positives = 142/338 (42%), Gaps = 57/338 (16%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
            Y+++ K+G G + +V E  +    E V +KI++ + K +     EI +L+ L       
Sbjct: 36  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKK--IKREIKILENLRGGP--- 90

Query: 153 TRCVQIRNWF--DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
              + + +           +VFE +         +           +R    ++L+++ +
Sbjct: 91  -NIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDY 144

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H + ++H D+KP N+++                            +   ++LID+G   
Sbjct: 145 CHSMGIMHRDVKPHNVMIDH--------------------------EHRKLRLIDWGLAE 178

Query: 270 FEH--QDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGE-ALFQTHENLE 325
           F H  Q+++  V++R+++ PE+++    ++Y  D+WS+GC+L  +   +   F  H+N +
Sbjct: 179 FYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD 238

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            L  + +VLG    +  I              + +        D +    +      +  
Sbjct: 239 QLVRIAKVLGTEDLYDYID-------------KYNIELDPRFNDILGRHSRKRWERFVHS 285

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
           ++    + + +D L  LLRYD   RL AREA+ HP+F 
Sbjct: 286 ENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFY 323

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (388), Expect = 1e-43
 Identities = 82/354 (23%), Positives = 144/354 (40%), Gaps = 57/354 (16%)

Query: 78  KDGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KY 131
           + G Y   + +    +   YR L  +G G +G V    D      VAIK +        +
Sbjct: 1   RSGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELF 60

Query: 132 REAAMIEIDVLQRLARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRS 190
            + A  E+ +L+ +   ++ G           D      +V   +G  L   ++      
Sbjct: 61  AKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKH---EK 117

Query: 191 FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY 250
              D ++ L  Q+L+ + ++H   +IH DLKP N+                         
Sbjct: 118 LGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLA------------------------ 153

Query: 251 FKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILV 309
              + +   +K++DFG       + +  V TR YRAPEVIL  + +    D+WSVGCI+ 
Sbjct: 154 ---VNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMA 210

Query: 310 ELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD 369
           E+ +G+ LF+  ++L+ L  + +V G  P   V R      K + +G     P+      
Sbjct: 211 EMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKG----LPE------ 260

Query: 370 SMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
                             + +++   ++LL+ +L  D  +R+ A EAL HP+F 
Sbjct: 261 ---------LEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFE 305

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (380), Expect = 2e-42
 Identities = 78/342 (22%), Positives = 146/342 (42%), Gaps = 56/342 (16%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRL 145
            +  RY+ LS +G G +G V   FD +    VA+K +        + +    E+ +L+ +
Sbjct: 15  EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM 74

Query: 146 ARHDIGGTR-CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLL 204
              ++ G           +  N + +V   +G  L + ++    +    D V+ L  Q+L
Sbjct: 75  KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQIL 131

Query: 205 ESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLID 264
             + ++H   +IH DLKP N+                            + +   +K++D
Sbjct: 132 RGLKYIHSADIIHRDLKPSNLA---------------------------VNEDCELKILD 164

Query: 265 FGSTTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHEN 323
           FG       + +  V+TR YRAPE++L    +N   D+WSVGCI+ EL +G  LF   ++
Sbjct: 165 FGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH 224

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
           ++ L ++ R++G     +                        +S  +   +  L ++P +
Sbjct: 225 IDQLKLILRLVGTPGAEL--------------------LKKISSESARNYIQSLTQMPKM 264

Query: 384 IMQHVDHSAG-DLIDLLQGLLRYDPAERLKAREALRHPFFTR 424
              +V   A    +DLL+ +L  D  +R+ A +AL H +F +
Sbjct: 265 NFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ 306

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (373), Expect = 5e-42
 Identities = 69/345 (20%), Positives = 126/345 (36%), Gaps = 86/345 (24%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-------KYREAAMIEID 140
           EN+   Y    ++G G F  V +C +       A K ++            RE    E+ 
Sbjct: 6   ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVS 65

Query: 141 VLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           +L+ + +H       + +   ++ +  + ++ E + G  L+DFL +    S   +   E 
Sbjct: 66  ILKEI-QHP----NVITLHEVYENKTDVILILELVAGGELFDFLAEK--ESLTEEEATEF 118

Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
            +Q+L  V ++H L++ H DLKPENI+L+                               
Sbjct: 119 LKQILNGVYYLHSLQIAHFDLKPENIMLLD-----------------------RNVPKPR 155

Query: 260 IKLIDFGSTTFEHQDHSY--VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
           IK+IDFG        + +  +  T  + APE++         D+WS+G I   L SG + 
Sbjct: 156 IKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 215

Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
           F      E LA +  V                                            
Sbjct: 216 FLGDTKQETLANVSAVNYEFED-------------------------------------- 237

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
                   ++  +++    D ++ LL  DP +R+  +++L+HP+ 
Sbjct: 238 --------EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 274

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  146 bits (370), Expect = 1e-41
 Identities = 81/337 (24%), Positives = 136/337 (40%), Gaps = 62/337 (18%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD 149
           +Y  L K+GEGT+G V +  +N  +   A+K +R            + EI +L+ L   +
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNNYGET-FALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     V++ +    +  + +VFE L   L   L             +    QLL  +A+
Sbjct: 62  I-----VKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAY 115

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H+ R++H DLKP+N+L+                            +   +K+ DFG   
Sbjct: 116 CHDRRVLHRDLKPQNLLI---------------------------NREGELKIADFGLAR 148

Query: 270 FEHQD---HSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                   +++ + T  YRAP+V++G   ++   D+WSVGCI  E+ +G  LF      +
Sbjct: 149 AFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD 208

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
            L  + R+LG                        +WP+                LP    
Sbjct: 209 QLMRIFRILGTPNSK-------------------NWPNVTELPKYDPNFTVYEPLP--WE 247

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             +       IDLL  +L+ DP +R+ A++AL H +F
Sbjct: 248 SFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYF 284

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (368), Expect = 2e-41
 Identities = 62/350 (17%), Positives = 131/350 (37%), Gaps = 93/350 (26%)

Query: 85  AIGENLTPRY-RILSKMGEGTFGQVVECFDNEKKELVAIKIVRS---INKYREAAMIEID 140
           A+G +   R+ +   ++G G+F  V +  D E    VA   ++        R+    E +
Sbjct: 1   AVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAE 60

Query: 141 VLQRLARHDIGGTRCVQIRNWF----DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDL 195
           +L+ L +H       V+  + +      +  I +V E +   +L  +L++   +   I +
Sbjct: 61  MLKGL-QHP----NIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKV 113

Query: 196 VRELGRQLLESVAFMHEL--RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
           +R   RQ+L+ + F+H     +IH DLK +NI +                +   GS    
Sbjct: 114 LRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFI----------------TGPTGS---- 153

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSY-VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC 312
                 +K+ D G  T +    +  V+ T  + APE+     ++   D+++ G  ++E+ 
Sbjct: 154 ------VKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMA 206

Query: 313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMR 372
           + E  +   +N   +                                            R
Sbjct: 207 TSEYPYSECQNAAQI-------------------------------------------YR 223

Query: 373 AVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
            V   ++  +        +  ++ ++++G +R +  ER   ++ L H FF
Sbjct: 224 RVTSGVKPASF----DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 269

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (363), Expect = 2e-40
 Identities = 81/336 (24%), Positives = 137/336 (40%), Gaps = 56/336 (16%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHD 149
           +Y  L K+GEGT+G V +  + E  E+VA+K VR  +       +A+ EI +L+ L   +
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 62

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     V++ +       + +VFE            +       ++V+    QLL+ + F
Sbjct: 63  I-----VRLHDVLHSDKKLTLVFEFCDQD-LKKYFDSCNGDLDPEIVKSFLFQLLKGLGF 116

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
            H   ++H DLKP+N+L+     +K+ ++                               
Sbjct: 117 CHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV--------------------- 155

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEA-LFQTHENLEHL 327
              + +S  V T  YR P+V+ G    +   D+WS GCI  EL +    LF  ++  + L
Sbjct: 156 ---RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQL 212

Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
             + R+LG                         WP      D     + +      ++  
Sbjct: 213 KRIFRLLGTPTEE-------------------QWPSMTKLPDYKP--YPMYPATTSLVNV 251

Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFT 423
           V        DLLQ LL+ +P +R+ A EAL+HP+F+
Sbjct: 252 VPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFS 287

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 2e-39
 Identities = 63/344 (18%), Positives = 114/344 (33%), Gaps = 97/344 (28%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHDI 150
           Y +L  +G G++G+  +       +++  K +         ++  + E+++L+ L   +I
Sbjct: 6   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI 65

Query: 151 GGTRCVQIRNWFDYR--NHICIVFEKL-GPSLYDFLRKNS--YRSFPIDLVRELGRQLLE 205
                V+  +    R    + IV E   G  L   + K +   +    + V  +  QL  
Sbjct: 66  -----VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTL 120

Query: 206 SVAFMHEL-----RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAI 260
           ++   H        ++H DLKP N+ L   + V                           
Sbjct: 121 ALKECHRRSDGGHTVLHRDLKPANVFLDGKQNV--------------------------- 153

Query: 261 KLIDFGSTTFEHQDHSY---VVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL 317
           KL DFG     + D S+    V T +Y +PE +  + +N   D+WS+GC+L ELC+    
Sbjct: 154 KLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPP 213

Query: 318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKL 377
           F      E    +                       R G     P   +           
Sbjct: 214 FTAFSQKELAGKI-----------------------REGKFRRIPYRYSD---------- 240

Query: 378 LRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                           +L +++  +L      R    E L +P 
Sbjct: 241 ----------------ELNEIITRMLNLKDYHRPSVEEILENPL 268

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  138 bits (347), Expect = 3e-38
 Identities = 60/335 (17%), Positives = 105/335 (31%), Gaps = 65/335 (19%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
           RYR+  K+G G+FG +    D    E VAIK+   +        IE  + + +       
Sbjct: 8   RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLEC-VKTKHPQLHIESKIYKMMQGGVG-- 64

Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
                IR      ++  +V E LGPSL D     S R F +  V  L  Q++  + ++H 
Sbjct: 65  --IPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHS 121

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
              IH D+KP+N L+   +   +           D    K    +              +
Sbjct: 122 KNFIHRDVKPDNFLMGLGKKGNLVYII-------DFGLAKKYRDAR-------THQHIPY 167

Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER 332
           +++  +  T  Y +    LG+  +   DL S+G +L+    G   +Q  +        ER
Sbjct: 168 RENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYER 227

Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
                                                         ++   I        
Sbjct: 228 ------------------------------------------ISEKKMSTPIEVLCKGYP 245

Query: 393 GDLIDLLQGLLRYDPAERLKA---REALRHPFFTR 424
            +    L         ++      R+  R+ F  +
Sbjct: 246 SEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ 280

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 4e-38
 Identities = 66/339 (19%), Positives = 113/339 (33%), Gaps = 92/339 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARH 148
            + +   +G+G+FG+V      +  +  AIK ++     ++   E  M+E  VL     H
Sbjct: 3   DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH 62

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
                    +   F  + ++  V E L G  L   ++      F +        +++  +
Sbjct: 63  PF----LTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSC--HKFDLSRATFYAAEIILGL 116

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            F+H   +++ DLK +NIL                   KDG            K+ DFG 
Sbjct: 117 QFLHSKGIVYRDLKLDNIL-----------------LDKDGHI----------KIADFGM 149

Query: 268 TTF---EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL 324
                      +    T  Y APE++LG  +N+  D WS G +L E+  G++ F   +  
Sbjct: 150 CKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE 209

Query: 325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLI 384
           E    +                        R     +P                      
Sbjct: 210 ELFHSI------------------------RMDNPFYPRWLEK----------------- 228

Query: 385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAR-EALRHPFF 422
                    +  DLL  L   +P +RL  R +  +HP F
Sbjct: 229 ---------EAKDLLVKLFVREPEKRLGVRGDIRQHPLF 258

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 4e-38
 Identities = 66/341 (19%), Positives = 110/341 (32%), Gaps = 90/341 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARH 148
            ++    +GEG+F  VV   +       AIKI+                E DV+ RL  H
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-DH 67

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
                  V++   F     +           L  ++RK    SF     R    +++ ++
Sbjct: 68  P----FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK--IGSFDETCTRFYTAEIVSAL 121

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++H   +IH DLKPENILL    ++++ D+      S +                    
Sbjct: 122 EYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPES------------------- 162

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
              +    +  V T  Y +PE++         DLW++GCI+ +L +G   F+        
Sbjct: 163 ---KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIF 219

Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
             + ++    P                      +P                         
Sbjct: 220 QKIIKLEYDFPEKF-------------------FP------------------------- 235

Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREA------LRHPFF 422
                    DL++ LL  D  +RL   E         HPFF
Sbjct: 236 ------KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 270

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (342), Expect = 1e-37
 Identities = 63/339 (18%), Positives = 108/339 (31%), Gaps = 94/339 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-------KYREAAMIEIDVLQRL 145
           +Y++   +G G FG V           VAIK V                  +E+ +L+++
Sbjct: 5   QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKV 64

Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
           +    G    +++ +WF+  +   ++ E+  P    F       +   +L R    Q+LE
Sbjct: 65  SSGFSG---VIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLE 121

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
           +V   H   ++H D+K ENIL+                                +KLIDF
Sbjct: 122 AVRHCHNCGVLHRDIKDENILIDL--------------------------NRGELKLIDF 155

Query: 266 G-STTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHEN 323
           G     +   ++    TR Y  PE I           +WS+G +L ++  G+  F+  E 
Sbjct: 156 GSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE 215

Query: 324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNL 383
                                                                ++R    
Sbjct: 216 -----------------------------------------------------IIRGQVF 222

Query: 384 IMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFF 422
             Q V      LI   +  L   P++R    E   HP+ 
Sbjct: 223 FRQRVSSECQHLI---RWCLALRPSDRPTFEEIQNHPWM 258

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  134 bits (337), Expect = 9e-37
 Identities = 52/252 (20%), Positives = 92/252 (36%), Gaps = 38/252 (15%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
            Y++  ++GEG+FG + E  +    + VAIK              E    + LA      
Sbjct: 6   HYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPR-RSDAPQLRDEYRTYKLLAGCTG-- 62

Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
                +  +     H  +V + LGPSL D L     R F +  V    +Q+L  V  +HE
Sbjct: 63  --IPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHE 119

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG------ 266
             L++ D+KP+N L+                             ++ I ++DFG      
Sbjct: 120 KSLVYRDIKPDNFLIGRPNS----------------------KNANMIYVVDFGMVKFYR 157

Query: 267 ----STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE 322
                    +++   +  T  Y +    LG   +   DL ++G + +    G   +Q  +
Sbjct: 158 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLK 217

Query: 323 NLEHLAMMERVL 334
              +    ER+ 
Sbjct: 218 AATNKQKYERIG 229

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  132 bits (334), Expect = 1e-35
 Identities = 67/342 (19%), Positives = 124/342 (36%), Gaps = 90/342 (26%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARH 148
            + +   +G G FG+V  C   +  ++ A+K +      + +    A+ E  +L  ++  
Sbjct: 5   DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           D      V +   F   + +  + + + G  L+  L ++    F    +R    +++  +
Sbjct: 65  DC--PFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGL 120

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG- 266
             MH   +++ DLKP NILL    +V                           ++ D G 
Sbjct: 121 EHMHNRFVVYRDLKPANILLDEHGHV---------------------------RISDLGL 153

Query: 267 STTFEHQDHSYVVSTRHYRAPEVIL-GLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
           +  F  +     V T  Y APEV+  G+ ++   D +S+GC+L +L  G + F+ H+  +
Sbjct: 154 ACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD 213

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
              +    L                        ++ PD  +                   
Sbjct: 214 KHEIDRMTLTM---------------------AVELPDSFSP------------------ 234

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLK-----AREALRHPFF 422
                   +L  LL+GLL+ D   RL      A+E    PFF
Sbjct: 235 --------ELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFF 268

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (324), Expect = 4e-35
 Identities = 56/329 (17%), Positives = 110/329 (33%), Gaps = 85/329 (25%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
             ++L  +G+G FG V+      +   VA+K +++ +   +A + E  V+ +L   ++  
Sbjct: 8   ELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKN-DATAQAFLAEASVMTQLRHSNL-- 62

Query: 153 TRCVQIRNWF-DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFM 210
              VQ+     + +  + IV E +   SL D+LR         D + +    + E++ ++
Sbjct: 63  ---VQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL 119

Query: 211 HELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTF 270
                +H DL   N+L+                 S+D             K+ DFG T  
Sbjct: 120 EGNNFVHRDLAARNVLV-----------------SEDNV----------AKVSDFGLTKE 152

Query: 271 EHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMM 330
                        + APE +    ++   D+WS G +L E+ S   +      L+ +   
Sbjct: 153 ASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV-- 210

Query: 331 ERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH 390
                                   +G ++D PDG                          
Sbjct: 211 --------------------PRVEKGYKMDAPDGCPP----------------------- 227

Query: 391 SAGDLIDLLQGLLRYDPAERLKAREALRH 419
               + ++++     D A R    +    
Sbjct: 228 ---AVYEVMKNCWHLDAAMRPSFLQLREQ 253

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  128 bits (323), Expect = 1e-34
 Identities = 69/338 (20%), Positives = 119/338 (35%), Gaps = 92/338 (27%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARHD 149
           ++IL  +G G+FG+V            A+K+++       K  E    E  +L  +    
Sbjct: 6   FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPF 65

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAF 209
           I     +++   F     I ++ + +       L + S R FP  + +    ++  ++ +
Sbjct: 66  I-----IRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQR-FPNPVAKFYAAEVCLALEY 119

Query: 210 MHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTT 269
           +H   +I+ DLKPENILL                  K+G           IK+ DFG   
Sbjct: 120 LHSKDIIYRDLKPENILL-----------------DKNGH----------IKITDFGFAK 152

Query: 270 FEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAM 329
           +       +  T  Y APEV+    +N   D WS G ++ E+ +G   F     ++    
Sbjct: 153 YVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK---T 209

Query: 330 MERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD 389
            E++L                      A L +P                           
Sbjct: 210 YEKIL---------------------NAELRFPPFFNE---------------------- 226

Query: 390 HSAGDLIDLLQGLLRYDPAERLK-----AREALRHPFF 422
               D+ DLL  L+  D ++RL        +   HP+F
Sbjct: 227 ----DVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWF 260

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (321), Expect = 5e-34
 Identities = 68/342 (19%), Positives = 118/342 (34%), Gaps = 97/342 (28%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARHD 149
           +  L  +G+GTFG+V+   +       A+KI+R             + E  VLQ      
Sbjct: 7   FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF 66

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEK-LGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           +       ++  F   + +C V E   G  L+  L +   R F  +  R  G +++ ++ 
Sbjct: 67  L-----TALKYAFQTHDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALE 119

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H   +++ D+K EN++L                  KDG           IK+ DFG  
Sbjct: 120 YLHSRDVVYRDIKLENLML-----------------DKDGH----------IKITDFGLC 152

Query: 269 TFEHQDHS---YVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE 325
                D +       T  Y APEV+    +    D W +G ++ E+  G   F   ++  
Sbjct: 153 KEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER 212

Query: 326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM 385
              ++                            + +P   +                   
Sbjct: 213 LFELILM------------------------EEIRFPRTLSP------------------ 230

Query: 386 QHVDHSAGDLIDLLQGLLRYDPAERLK-----AREALRHPFF 422
                   +   LL GLL+ DP +RL      A+E + H FF
Sbjct: 231 --------EAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFF 264

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (316), Expect = 3e-33
 Identities = 65/339 (19%), Positives = 114/339 (33%), Gaps = 92/339 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQRLARH 148
           ++  +  +G G+FG+V+     E     A+KI+        K  E  + E  +LQ +   
Sbjct: 42  QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
            +         ++ D  N   ++    G  ++  LR+     F     R    Q++ +  
Sbjct: 102 FL----VKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI--GRFSEPHARFYAAQIVLTFE 155

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H L LI+ DLKPEN+L+                  + G           I++ DFG  
Sbjct: 156 YLHSLDLIYRDLKPENLLI-----------------DQQGY----------IQVTDFGFA 188

Query: 269 TFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLA 328
                    +  T    APE+IL  G+N   D W++G ++ E+ +G   F   + ++   
Sbjct: 189 KRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYE 248

Query: 329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV 388
            +       P H                      D                         
Sbjct: 249 KIVSGKVRFPSHF-------------------SSD------------------------- 264

Query: 389 DHSAGDLIDLLQGLLRYDPAERLK-----AREALRHPFF 422
                 L DLL+ LL+ D  +R         +   H +F
Sbjct: 265 ------LKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWF 297

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (303), Expect = 4e-32
 Identities = 65/334 (19%), Positives = 119/334 (35%), Gaps = 81/334 (24%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
             +++ ++G G FG+V   + N   + VA+K ++  +   +A + E +++++L +H    
Sbjct: 14  TLKLVERLGAGQFGEVWMGYYNGHTK-VAVKSLKQGSMSPDAFLAEANLMKQL-QHQ--- 68

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
            R V++      +  I I+ E +   SL DFL+  S     I+ + ++  Q+ E +AF+ 
Sbjct: 69  -RLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE 126

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
           E   IH DL+  NIL+      K+ D+  L+R  +D  Y                     
Sbjct: 127 ERNYIHRDLRAANILVSDTLSCKIADFG-LARLIEDNEYTA------------------- 166

Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMME 331
                       + APE I    +    D+WS G +L E+ +   +         +    
Sbjct: 167 ---REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVI--- 220

Query: 332 RVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHS 391
                              +   RG R+  PD                            
Sbjct: 221 -------------------QNLERGYRMVRPDNCPE------------------------ 237

Query: 392 AGDLIDLLQGLLRYDPAERLKAREALR--HPFFT 423
             +L  L++   +  P +R            FFT
Sbjct: 238 --ELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT 269

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  119 bits (300), Expect = 1e-31
 Identities = 59/342 (17%), Positives = 104/342 (30%), Gaps = 83/342 (24%)

Query: 89  NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR----SINKYREAAMIEIDVLQR 144
           +L+ RY +   +G G   +V    D      VA+K++R        +      E      
Sbjct: 4   HLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAA 63

Query: 145 LARHDIGGTRCVQIRNWFDYRNH----ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVREL 199
           L    I     V + +  +          IV E + G +L D +              E+
Sbjct: 64  LNHPAI-----VAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHT--EGPMTPKRAIEV 116

Query: 200 GRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSA 259
                +++ F H+  +IH D+KP NI++ +   VKV D+      +  G+          
Sbjct: 117 IADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNS--------- 167

Query: 260 IKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ 319
                           + V+ T  Y +PE   G   +   D++S+GC+L E+ +GE  F 
Sbjct: 168 ------------VTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFT 215

Query: 320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLR 379
               +                 V     R +                             
Sbjct: 216 GDSPVS----------------VAYQHVREDPIPPSARHEGLSA---------------- 243

Query: 380 LPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPF 421
                         DL  ++   L  +P  R +    +R   
Sbjct: 244 --------------DLDAVVLKALAKNPENRYQTAAEMRADL 271

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 4e-31
 Identities = 58/339 (17%), Positives = 115/339 (33%), Gaps = 93/339 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVR---SINKYREAAMIEIDVLQRLARHD 149
           +  +  ++G G+FG V +   +     VA+K++       +  +A   E+ VL++    +
Sbjct: 9   QITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65

Query: 150 IGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVA 208
           I     +    +      + IV +   G SLY  L     + F +  + ++ RQ  + + 
Sbjct: 66  I-----LLFMGYST-APQLAIVTQWCEGSSLYHHLHIIETK-FEMIKLIDIARQTAQGMD 118

Query: 209 FMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGST 268
           ++H   +IH DLK  NI L                  +D +          +K+ DFG  
Sbjct: 119 YLHAKSIIHRDLKSNNIFL-----------------HEDLT----------VKIGDFGLA 151

Query: 269 TFEHQDHSY-----VVSTRHYRAPEVILGLGWN---YPCDLWSVGCILVELCSGEALFQT 320
           T + +         +  +  + APEVI     N   +  D+++ G +L EL +G+  +  
Sbjct: 152 TVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPY-- 209

Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
                                                         +RD +  +     L
Sbjct: 210 ------------------------------------------SNINNRDQIIFMVGRGYL 227

Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH 419
              + +   +    +  L+   L+    ER    + L  
Sbjct: 228 SPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS 266

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 2e-30
 Identities = 64/333 (19%), Positives = 109/333 (32%), Gaps = 79/333 (23%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
             R+  K+G+G FG+V     N     VAIK ++      EA + E  V+++L    +  
Sbjct: 18  SLRLEVKLGQGCFGEVWMGTWNGTTR-VAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL-- 74

Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
              VQ+           +       SL DFL+  + +   +  + ++  Q+   +A++  
Sbjct: 75  ---VQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER 131

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
           +  +H DL+  NIL+      KV D+  L+R  +D  Y                      
Sbjct: 132 MNYVHRDLRAANILVGENLVCKVADFG-LARLIEDNEYTA-------------------- 170

Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER 332
                      + APE  L   +    D+WS G +L EL +   +         +  +++
Sbjct: 171 --RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV--LDQ 226

Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
           V                     RG R+  P                              
Sbjct: 227 V--------------------ERGYRMPCPPECPE------------------------- 241

Query: 393 GDLIDLLQGLLRYDPAERLKAREALR--HPFFT 423
             L DL+    R +P ER            +FT
Sbjct: 242 -SLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT 273

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 4e-29
 Identities = 54/357 (15%), Positives = 105/357 (29%), Gaps = 104/357 (29%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKEL-----VAIKIVR--SINKYREAAMIEIDVLQRL 145
                  +G G FG+V+        +      VA+K+++  + +  REA M E+ ++ +L
Sbjct: 38  NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQL 97

Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYR--------------- 189
             H+      V +         I ++FE      L ++LR    +               
Sbjct: 98  GSHE----NIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLE 153

Query: 190 ------SFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR 243
                     + +     Q+ + + F+     +H DL   N+L+   + VK+ D+     
Sbjct: 154 EEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARD 213

Query: 244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWS 303
              D +Y                                 + APE +    +    D+WS
Sbjct: 214 IMSDSNYVV----------------------RGNARLPVKWMAPESLFEGIYTIKSDVWS 251

Query: 304 VGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP 362
            G +L E+ S G   +       +                        K  + G ++D P
Sbjct: 252 YGILLWEIFSLGVNPYPGIPVDANF----------------------YKLIQNGFKMDQP 289

Query: 363 DGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH 419
             AT                           ++  ++Q    +D  +R         
Sbjct: 290 FYATE--------------------------EIYIIMQSCWAFDSRKRPSFPNLTSF 320

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 1e-28
 Identities = 55/327 (16%), Positives = 105/327 (32%), Gaps = 77/327 (23%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
               + ++G G FG V   +    K+ VAIK +R      E  + E +V+ +L  H    
Sbjct: 6   ELTFVQEIGSGQFGLVHLGYW-LNKDKVAIKTIREGAMSEEDFIEEAEVMMKL-SHP--- 60

Query: 153 TRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE 212
            + VQ+      +  IC+VFE +         +     F  + +  +   + E +A++ E
Sbjct: 61  -KLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEE 119

Query: 213 LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEH 272
             +IH DL   N L+   + +KV D+        D                       ++
Sbjct: 120 ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD-----------------------QY 156

Query: 273 QDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMER 332
              +       + +PEV     ++   D+WS G ++ E+ S   +   + +   +     
Sbjct: 157 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVED-- 214

Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
                                  G RL  P  A++                         
Sbjct: 215 --------------------ISTGFRLYKPRLAST------------------------- 229

Query: 393 GDLIDLLQGLLRYDPAERLKAREALRH 419
             +  ++    +  P +R      LR 
Sbjct: 230 -HVYQIMNHCWKERPEDRPAFSRLLRQ 255

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 3e-28
 Identities = 62/350 (17%), Positives = 110/350 (31%), Gaps = 97/350 (27%)

Query: 93  RYRILSKMGEGTFGQVVEC-----FDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRL 145
           R      +G G FG+VVE        ++    VA+K+++  +    REA M E+ VL  L
Sbjct: 24  RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYL 83

Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRK----------------NSY 188
             H       V +           ++ E      L +FLR+                +  
Sbjct: 84  GNHM----NIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDE 139

Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
            +  ++ +     Q+ + +AF+     IH DL   NILL      K+ D+        D 
Sbjct: 140 LALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDS 199

Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL 308
           +Y                                 + APE I    + +  D+WS G  L
Sbjct: 200 NYVV----------------------KGNARLPVKWMAPESIFNCVYTFESDVWSYGIFL 237

Query: 309 VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR 368
            EL S  +       ++                         K  + G R+  P+ A + 
Sbjct: 238 WELFSLGSSPYPGMPVDSKFY---------------------KMIKEGFRMLSPEHAPA- 275

Query: 369 DSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
                                    ++ D+++     DP +R   ++ ++
Sbjct: 276 -------------------------EMYDIMKTCWDADPLKRPTFKQIVQ 300

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (276), Expect = 4e-28
 Identities = 49/331 (14%), Positives = 113/331 (34%), Gaps = 85/331 (25%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
              +  K+G G +G+V E    +    VA+K ++      E  + E  V++ +   ++  
Sbjct: 18  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNL-- 75

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
              VQ+           I+ E +   +L D+LR+ + +     ++  +  Q+  ++ ++ 
Sbjct: 76  ---VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 132

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
           +   IH DL   N L+                  ++            +K+ DFG +   
Sbjct: 133 KKNFIHRDLAARNCLV-----------------GENHL----------VKVADFGLSRLM 165

Query: 272 HQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
             D    H+       + APE +    ++   D+W+ G +L E+ +         +L  +
Sbjct: 166 TGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV 225

Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
             +                        +  R++ P+G                       
Sbjct: 226 YEL----------------------LEKDYRMERPEGCPE-------------------- 243

Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
                  + +L++   +++P++R    E  +
Sbjct: 244 ------KVYELMRACWQWNPSDRPSFAEIHQ 268

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 6e-28
 Identities = 56/338 (16%), Positives = 106/338 (31%), Gaps = 63/338 (18%)

Query: 93  RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGG 152
              +   +G+G FG+V       + E VA+KI  S  +       EI     L   +I G
Sbjct: 4   TIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILG 61

Query: 153 TRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSY-----RSFPIDLVRELGRQLLES 206
                 ++   +   + +V +     SL+D+L + +          +     L    +E 
Sbjct: 62  FIAADNKDNGTW-TQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEI 120

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           V    +  + H DLK +NIL+       + D     R           P           
Sbjct: 121 VGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNH--------- 171

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYP------CDLWSVGCILVELCSGEALFQT 320
                       V T+ Y APEV+               D++++G +  E+    ++   
Sbjct: 172 -----------RVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGI 220

Query: 321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL 380
           HE+ +          P    M        +    +  R + P+   S +++R        
Sbjct: 221 HEDYQLPYYDLVPSDPSVEEM-------RKVVCEQKLRPNIPNRWQSCEALR-------- 265

Query: 381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
                         +  +++     + A RL A    +
Sbjct: 266 -------------VMAKIMRECWYANGAARLTALRIKK 290

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-28
 Identities = 61/333 (18%), Positives = 122/333 (36%), Gaps = 86/333 (25%)

Query: 99  KMGEGTFGQVVECFDNEKK--ELVAIKIVR---SINKYREAAMIEIDVLQRLARHDIGGT 153
           ++G G FG V + +   KK  + VA+KI++   +    ++  + E +V+Q+L  +     
Sbjct: 14  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQL-DNP---- 68

Query: 154 RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
             V++    +  + + ++       L  +L++N  R      + EL  Q+   + ++ E 
Sbjct: 69  YIVRMIGICEAESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYLEES 126

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   N+LLV+  Y K+ D+  LS+                       +    ++
Sbjct: 127 NFVHRDLAARNVLLVTQHYAKISDF-GLSK--------------------ALRADENYYK 165

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE-LCSGEALFQTHENLEHLAMMER 332
             ++      + APE I    ++   D+WS G ++ E    G+  ++  +  E  AM+E 
Sbjct: 166 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLE- 224

Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
                                 +G R+  P G                            
Sbjct: 225 ----------------------KGERMGCPAGCPR------------------------- 237

Query: 393 GDLIDLLQGLLRYDPAERLKARE---ALRHPFF 422
            ++ DL+     YD   R         LR+ ++
Sbjct: 238 -EMYDLMNLCWTYDVENRPGFAAVELRLRNYYY 269

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 1e-27
 Identities = 56/346 (16%), Positives = 104/346 (30%), Gaps = 96/346 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFDNE--KKELVAIKIVRSIN--KYREAAMIEIDVLQRLARH 148
             +    +GEG FGQV++    +   +   AIK ++             E++VL +L  H
Sbjct: 11  DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH 70

Query: 149 DIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSY--------------RSFPI 193
                  + +    ++R ++ +  E     +L DFLRK+                 +   
Sbjct: 71  P----NIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSS 126

Query: 194 DLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKN 253
             +      +   + ++ + + IH DL   NIL+      K+ D+  LSR  +       
Sbjct: 127 QQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADF-GLSRGQEV------ 179

Query: 254 LPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS 313
                             +   +       + A E +    +    D+WS G +L E+ S
Sbjct: 180 ------------------YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 221

Query: 314 GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRA 373
                        L                       +   +G RL+ P           
Sbjct: 222 LGGTPYCGMTCAELY----------------------EKLPQGYRLEKPLNCDD------ 253

Query: 374 VWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH 419
                               ++ DL++   R  P ER    + L  
Sbjct: 254 --------------------EVYDLMRQCWREKPYERPSFAQILVS 279

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 3e-27
 Identities = 63/346 (18%), Positives = 121/346 (34%), Gaps = 91/346 (26%)

Query: 93  RYRILSKMGEGTFGQV---VECFDNEKKELVAIKIVRSIN-----KYREAAMIEIDVLQR 144
            + +L  +G G +G+V    +   ++  +L A+K+++        K  E    E  VL+ 
Sbjct: 25  NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 84

Query: 145 LARHDIGGTRCVQIRNWFDYRNHICIVFE-KLGPSLYDFLRKNSYRSFPIDLVRELGRQL 203
           + +        V +   F     + ++ +   G  L+  L +     F    V+    ++
Sbjct: 85  IRQSPF----LVTLHYAFQTETKLHLILDYINGGELFTHLSQR--ERFTEHEVQIYVGEI 138

Query: 204 LESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLI 263
           + ++  +H+L +I+ D+K ENILL S  +V + D+                    + + +
Sbjct: 139 VLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGL------------------SKEFV 180

Query: 264 DFGSTTFEHQDHSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGEALFQTH 321
              +        +       Y AP+++ G   G +   D WS+G ++ EL +G + F   
Sbjct: 181 ADETERAYDFCGTI-----EYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVD 235

Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
                 A + R +                          +P   ++              
Sbjct: 236 GEKNSQAEISRRILKSE--------------------PPYPQEMSA-------------- 261

Query: 382 NLIMQHVDHSAGDLIDLLQGLLRYDPAERLK-----AREALRHPFF 422
                          DL+Q LL  DP +RL      A E   H FF
Sbjct: 262 ------------LAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFF 295

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (268), Expect = 5e-27
 Identities = 53/301 (17%), Positives = 108/301 (35%), Gaps = 33/301 (10%)

Query: 88  ENLTPRYRILSKMGEGTFGQVVECFD---NEKKELVAIKIVRS--INKYREAAMIEIDVL 142
           E      +I   +G G FG+V         +++  VAIK ++S    K R   + E  ++
Sbjct: 22  EIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIM 81

Query: 143 QRLARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQ 202
            +    ++     + +         + I+ E +     D   + +   F +  +  + R 
Sbjct: 82  GQFDHPNV-----IHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRG 136

Query: 203 LLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKL 262
           +   + ++ ++  +H DL   NIL+ S    KV D+  LSR  +D +       +   K+
Sbjct: 137 IAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFG-LSRFLEDDTSDPTYTSALGGKI 195

Query: 263 IDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTH 321
                                + APE I    +    D+WS G ++ E+ S GE  +   
Sbjct: 196 ------------------PIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDM 237

Query: 322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLP 381
            N +   ++  +         +       +      + D          +  + K++R P
Sbjct: 238 TNQD---VINAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNP 294

Query: 382 N 382
           N
Sbjct: 295 N 295

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-26
 Identities = 64/334 (19%), Positives = 113/334 (33%), Gaps = 86/334 (25%)

Query: 99  KMGEGTFGQVVECFDNEKKE--LVAIKIVR--SINKYREAAMIEIDVLQRLARHDIGGTR 154
           ++G G FG V +     +K+   VAIK+++  +     E  M E  ++ +L    I    
Sbjct: 16  ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYI---- 71

Query: 155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
            V++         + +V E   G  L+ FL        P+  V EL  Q+   + ++ E 
Sbjct: 72  -VRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEK 128

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
             +H DL   N+LLV+  Y K+ D+        D SY                     + 
Sbjct: 129 NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSY---------------------YT 167

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE-LCSGEALFQTHENLEHLAMMER 332
             S       + APE I    ++   D+WS G  + E L  G+  ++  +  E +A +E 
Sbjct: 168 ARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIE- 226

Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
                                 +G R++ P                              
Sbjct: 227 ----------------------QGKRMECPPECPP------------------------- 239

Query: 393 GDLIDLLQGLLRYDPAERLKARE---ALRHPFFT 423
            +L  L+     Y   +R         +R  +++
Sbjct: 240 -ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS 272

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 2e-26
 Identities = 54/327 (16%), Positives = 106/327 (32%), Gaps = 79/327 (24%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGT 153
              L ++G G FG V       + + VAIK+++  +   +  + E  V+  L+   +   
Sbjct: 6   LTFLKELGTGQFGVVKYGKWRGQYD-VAIKMIKEGSMSEDEFIEEAKVMMNLSHEKL--- 61

Query: 154 RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
             VQ+      +  I I+ E +         +     F    + E+ + + E++ ++   
Sbjct: 62  --VQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK 119

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
           + +H DL   N L+     VKV D+  LSR   D  Y  +                    
Sbjct: 120 QFLHRDLAARNCLVNDQGVVKVSDFG-LSRYVLDDEYTSS-------------------- 158

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMER 332
                     +  PEV++   ++   D+W+ G ++ E+ S G+  ++   N E    +  
Sbjct: 159 --VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHI-- 214

Query: 333 VLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA 392
                                 +G RL  P  A+                          
Sbjct: 215 ---------------------AQGLRLYRPHLASE------------------------- 228

Query: 393 GDLIDLLQGLLRYDPAERLKAREALRH 419
             +  ++         ER   +  L +
Sbjct: 229 -KVYTIMYSCWHEKADERPTFKILLSN 254

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 3e-26
 Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 82/332 (24%)

Query: 93  RYRILSKMGEGTFGQVVECFD---NEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLAR 147
           R  +   +GEG FG V +            VAIK  ++   +  RE  + E   +++   
Sbjct: 8   RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQF-D 66

Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
           H       V++       N + I+ E           +    S  +  +     QL  ++
Sbjct: 67  HP----HIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTAL 121

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
           A++   R +H D+   N+L+ S + VK+ D+  LSR  +D +Y+K               
Sbjct: 122 AYLESKRFVHRDIAARNVLVSSNDCVKLGDF-GLSRYMEDSTYYK--------------- 165

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                   S       + APE I    +    D+W  G  + E+               +
Sbjct: 166 -------ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV 218

Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
                                       G RL  P                         
Sbjct: 219 IGR----------------------IENGERLPMPPNCPP-------------------- 236

Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRH 419
                  L  L+     YDP+ R +  E    
Sbjct: 237 ------TLYSLMTKCWAYDPSRRPRFTELKAQ 262

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-25
 Identities = 48/303 (15%), Positives = 100/303 (33%), Gaps = 34/303 (11%)

Query: 93  RYRILSKMGEGTFGQVVECF----DNEKKELVAIKIVR--SINKYREAAMIEIDVLQRLA 146
                  +G G FG+V +        +K+  VAIK ++     K R   + E  ++ + +
Sbjct: 8   CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFS 67

Query: 147 RHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLES 206
            H+I     +++         + I+ E +     D   +     F +  +  + R +   
Sbjct: 68  HHNI-----IRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAG 122

Query: 207 VAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFG 266
           + ++  +  +H DL   NIL+ S    KV D+        D                   
Sbjct: 123 MKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTT------------ 170

Query: 267 STTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH 326
                    S       + APE I    +    D+WS G ++ E+ +         +   
Sbjct: 171 ---------SGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE 221

Query: 327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQ 386
           +  M+ +         +       +   +  + +        D +  + KL+R P+ +  
Sbjct: 222 V--MKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSLKT 279

Query: 387 HVD 389
             D
Sbjct: 280 LAD 282

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  103 bits (256), Expect = 2e-25
 Identities = 57/356 (16%), Positives = 103/356 (28%), Gaps = 105/356 (29%)

Query: 93  RYRILSKMGEGTFGQVVEC-----FDNEKKELVAIKIVR--SINKYREAAMIEIDVLQRL 145
               +  +GEG FG+V +         E   +VA+K+++  +    +     E  ++   
Sbjct: 14  NIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEF 73

Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRS-------------- 190
                     V++         +C++FE +    L +FLR  S  +              
Sbjct: 74  DNP-----NIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRAR 128

Query: 191 --------FPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS 242
                           + RQ+   +A++ E + +H DL   N L+     VK+ D+  LS
Sbjct: 129 VSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADF-GLS 187

Query: 243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLW 302
           R+     Y+K                               +  PE I    +    D+W
Sbjct: 188 RNIYSADYYKA---------------------DGNDAIPIRWMPPESIFYNRYTTESDVW 226

Query: 303 SVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWP 362
           + G +L E+ S           E +                          R G  L  P
Sbjct: 227 AYGVVLWEIFSYGLQPYYGMAHEEVIYY----------------------VRDGNILACP 264

Query: 363 DGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR 418
           +                              +L +L++      PA+R       R
Sbjct: 265 ENCPL--------------------------ELYNLMRLCWSKLPADRPSFCSIHR 294

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 6e-25
 Identities = 50/351 (14%), Positives = 108/351 (30%), Gaps = 98/351 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFD-------NEKKELVAIKIVR--SINKYREAAMIEIDVLQ 143
           R  +   +GEG FGQVV             +   VA+K+++  +  K     + E+++++
Sbjct: 14  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 73

Query: 144 RLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLR--------------KNSY 188
            + +H       + +         + ++ E     +L ++L+               N  
Sbjct: 74  MIGKHKN----IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 129

Query: 189 RSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG 248
                  +     Q+   + ++   + IH DL   N+L+     +K+ D+          
Sbjct: 130 EQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 189

Query: 249 SYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL 308
            Y K                       +       + APE +    + +  D+WS G +L
Sbjct: 190 YYKK----------------------TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 227

Query: 309 VELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSR 368
            E+ +          +E L                       K  + G R+D P   T+ 
Sbjct: 228 WEIFTLGGSPYPGVPVEELF----------------------KLLKEGHRMDKPSNCTN- 264

Query: 369 DSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH 419
                                    +L  +++      P++R   ++ +  
Sbjct: 265 -------------------------ELYMMMRDCWHAVPSQRPTFKQLVED 290

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-24
 Identities = 48/326 (14%), Positives = 91/326 (27%), Gaps = 77/326 (23%)

Query: 99  KMGEGTFGQVVECFD---NEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGT 153
            +G G FG V        + KK   A+K +  I         + E  +++  +  ++   
Sbjct: 34  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV--- 90

Query: 154 RCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHEL 213
               +           +V   +         +N   +  +  +   G Q+ + + F+   
Sbjct: 91  -LSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK 149

Query: 214 RLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ 273
           + +H DL   N +L     VKV D+  L+R   D  +     K+                
Sbjct: 150 KFVHRDLAARNCMLDEKFTVKVADF-GLARDMYDKEFDSVHNKTG--------------- 193

Query: 274 DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERV 333
                     + A E +    +    D+WS G +L EL +  A      N   +      
Sbjct: 194 ----AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDIT----- 244

Query: 334 LGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG 393
                             Y  +G RL  P                          ++   
Sbjct: 245 -----------------VYLLQGRRLLQP--------------------------EYCPD 261

Query: 394 DLIDLLQGLLRYDPAERLKAREALRH 419
            L +++          R    E +  
Sbjct: 262 PLYEVMLKCWHPKAEMRPSFSELVSR 287

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.4 bits (247), Expect = 3e-24
 Identities = 43/254 (16%), Positives = 95/254 (37%), Gaps = 35/254 (13%)

Query: 93  RYRILSKMGEGTFGQVVECF---DNEKKELVAIKIVR----SINKYREAAMIEIDVLQRL 145
             R+L K+G+G+FG V        + K   VA+K ++    S  +  +  + E++ +  L
Sbjct: 9   DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL 68

Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 205
              ++     +++         + +V E           +     F +  +     Q+ E
Sbjct: 69  DHRNL-----IRLYGVV-LTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAE 122

Query: 206 SVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDF 265
            + ++   R IH DL   N+LL + + VK+ D+  +    ++  +               
Sbjct: 123 GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH--------------- 167

Query: 266 GSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL 324
                 +    +      + APE +    +++  D W  G  L E+ + G+  +      
Sbjct: 168 ------YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS 221

Query: 325 EHLAMMERVLGPLP 338
           + L  +++    LP
Sbjct: 222 QILHKIDKEGERLP 235

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 3e-24
 Identities = 53/352 (15%), Positives = 110/352 (31%), Gaps = 97/352 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVR--SINKYREAAMIEIDVLQRL 145
           +  +  ++G+G+FG V E        +E +  VAIK V   +  + R   + E  V++  
Sbjct: 21  KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF 80

Query: 146 ARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKN--------SYRSFPIDLV 196
             H +     V++           ++ E +    L  +LR                +  +
Sbjct: 81  NCHHV-----VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKM 135

Query: 197 RELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPK 256
            ++  ++ + +A+++  + +H DL   N ++     VK+ D+       +   Y K    
Sbjct: 136 IQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRK---- 191

Query: 257 SSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA 316
                                 +    + +PE +    +    D+WS G +L E+ +   
Sbjct: 192 ------------------GGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAE 233

Query: 317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWK 376
                 + E +                       ++   G  LD PD             
Sbjct: 234 QPYQGLSNEQVL----------------------RFVMEGGLLDKPDNCPD--------- 262

Query: 377 LLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR------HPFF 422
                             L +L++   +Y+P  R    E +        P F
Sbjct: 263 -----------------MLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGF 297

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (244), Expect = 1e-23
 Identities = 51/332 (15%), Positives = 101/332 (30%), Gaps = 82/332 (24%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKEL----VAIKIVRSIN--KYREAAMIEIDVLQRLAR 147
           ++ +  +G G FG V +     + E     VAIK +R     K  +  + E  V+  +  
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 148 HDIGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESV 207
             +      ++           I        L D++R++   +     +     Q+ + +
Sbjct: 71  PHV-----CRLLGICLTSTVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGM 124

Query: 208 AFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGS 267
            ++ + RL+H DL   N+L+ + ++VK+ D+  L++                        
Sbjct: 125 NYLEDRRLVHRDLAARNVLVKTPQHVKITDFG-LAKLLGAEEK----------------- 166

Query: 268 TTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHL 327
                           + A E IL   + +  D+WS G  + EL +  +          +
Sbjct: 167 ----EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI 222

Query: 328 AMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQH 387
           +                          +G RL  P   T                     
Sbjct: 223 S----------------------SILEKGERLPQPPICTI-------------------- 240

Query: 388 VDHSAGDLIDLLQGLLRYDPAERLKAREALRH 419
                 D+  ++      D   R K RE +  
Sbjct: 241 ------DVYMIMVKCWMIDADSRPKFRELIIE 266

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 2e-23
 Identities = 58/350 (16%), Positives = 105/350 (30%), Gaps = 96/350 (27%)

Query: 93  RYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVR--SINKYREAAMIEIDVLQRL 145
           R ++   +G G FGQV+E              VA+K+++  + +    A M E+ +L  +
Sbjct: 14  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 73

Query: 146 ARHDIGGTRCVQIRN-WFDYRNHICIVFEKL-GPSLYDFLRKN--------------SYR 189
             H       V +          + ++ E     +L  +LR                   
Sbjct: 74  GHHLN----VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 129

Query: 190 SFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS 249
              ++ +     Q+ + + F+   + IH DL   NILL     VK+ D+       KD  
Sbjct: 130 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 189

Query: 250 YFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV 309
           Y +                               + APE I    +    D+WS G +L 
Sbjct: 190 YVR----------------------KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLW 227

Query: 310 ELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRD 369
           E+ S  A       ++                         +  + G R+  PD  T   
Sbjct: 228 EIFSLGASPYPGVKIDEEFC---------------------RRLKEGTRMRAPDYTTP-- 264

Query: 370 SMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH 419
                                   ++   +      +P++R    E + H
Sbjct: 265 ------------------------EMYQTMLDCWHGEPSQRPTFSELVEH 290

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 66.0 bits (160), Expect = 3e-13
 Identities = 28/219 (12%), Positives = 60/219 (27%), Gaps = 31/219 (14%)

Query: 94  YRILSKMGEGTFGQVVECFDNEKKELVAIKIVR-SINKYREAAMIEIDVLQRLARHD-IG 151
             I   MGEG    V  C+  +  E   +K  +     +++            +      
Sbjct: 2   DAIGKLMGEGKESAVFNCYSEKFGE-CVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRS 60

Query: 152 GTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMH 211
                +            +   +    L + +         ++   E+   +LE VA  +
Sbjct: 61  ARNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY 120

Query: 212 ELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFE 271
              ++H DL   N+L+                                I +IDF  +   
Sbjct: 121 HRGIVHGDLSQYNVLVSEEG----------------------------IWIIDFPQSVEV 152

Query: 272 HQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE 310
            ++    +  R  R         +    D+ S    +++
Sbjct: 153 GEEGWREILERDVRNIITYFSRTYRTEKDINSAIDRILQ 191

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	433
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.93
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.42
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	98.05
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.88
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	97.79
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	97.39
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	97.13

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-63  Score=450.08  Aligned_cols=250  Identities=27%  Similarity=0.457  Sum_probs=217.1

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++.+.||+|+||+||+|+++.+++.||+|++.+.    ....+.+.+|+.++++++|+||     +++++++.+++.
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnI-----v~~~~~~~~~~~   80 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNI-----LRLYGYFHDATR   80 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTB-----CCEEEEEECSSE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCC-----CeEEEEEEECCE
Confidence            4699999999999999999999999999999998643    2345678899999999988887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||| +|+|.+++....  .+++..++.++.||+.||+|||++|||||||||+|||++.+|               
T Consensus        81 ~~ivmEy~~~g~L~~~l~~~~--~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~---------------  143 (263)
T d2j4za1          81 VYLILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAG---------------  143 (263)
T ss_dssp             EEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS---------------
T ss_pred             EEEEEeecCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCC---------------
Confidence            99999999 899999998765  799999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                  .+||+|||+|...... .....||+.|||||++.+..++.++|||||||++|||++|+.||.+.+..+
T Consensus       144 ------------~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~  211 (263)
T d2j4za1         144 ------------ELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE  211 (263)
T ss_dssp             ------------CEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             ------------CEeecccceeeecCCCcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHH
Confidence                        5677788877654433 344689999999999999999999999999999999999999999887776


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+....+|                                                  +.+++++++||.+||+.
T Consensus       212 ~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~~li~~~L~~  241 (263)
T d2j4za1         212 TYKRISRVEFTFP--------------------------------------------------DFVTEGARDLISRLLKH  241 (263)
T ss_dssp             HHHHHHTTCCCCC--------------------------------------------------TTSCHHHHHHHHHHTCS
T ss_pred             HHHHHHcCCCCCC--------------------------------------------------ccCCHHHHHHHHHHccC
Confidence            6665544322221                                                  23577899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCC
Q 013941          406 DPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||++|||++|+|+||||+++
T Consensus       242 dp~~R~t~~eil~hp~~~~~  261 (263)
T d2j4za1         242 NPSQRPMLREVLEHPWITAN  261 (263)
T ss_dssp             SGGGSCCHHHHHTCHHHHHH
T ss_pred             CHhHCcCHHHHHcCcCcCCc
Confidence            99999999999999999864

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-62  Score=451.03  Aligned_cols=257  Identities=22%  Similarity=0.379  Sum_probs=210.7

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .++|++++.||+|+||+||+|+++.+|+.||||+++...  ...+.+.+|+.++++++|+||     +++++++.+++.+
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnI-----v~~~~~~~~~~~~   78 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENV-----VKFYGHRREGNIQ   78 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTB-----CCEEEEEEETTEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCE-----eeEeeeeccCcee
Confidence            457999999999999999999999999999999987532  334567899999999998887     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ||||||| +|+|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.++                
T Consensus        79 ~ivmEy~~gg~L~~~l~~~~--~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~----------------  140 (271)
T d1nvra_          79 YLFLEYCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERD----------------  140 (271)
T ss_dssp             EEEEECCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC----------------
T ss_pred             EEEEeccCCCcHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCC----------------
Confidence            9999999 899999997654  799999999999999999999999999999999999997654                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCC-CccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                 .+||+|||+|......     ....+||+.|||||++.+..+ +.++|||||||++|||++|+.||...
T Consensus       141 -----------~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~  209 (271)
T d1nvra_         141 -----------NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP  209 (271)
T ss_dssp             -----------CEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSS
T ss_pred             -----------CEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCC
Confidence                       5778888877654321     234689999999999998876 57899999999999999999999765


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      ................                                               ......+++++.+||.+
T Consensus       210 ~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~s~~~~~li~~  242 (271)
T d1nvra_         210 SDSCQEYSDWKEKKTY-----------------------------------------------LNPWKKIDSAPLALLHK  242 (271)
T ss_dssp             STTSHHHHHHHTTCTT-----------------------------------------------STTGGGSCHHHHHHHHH
T ss_pred             ChHHHHHHHHhcCCCC-----------------------------------------------CCccccCCHHHHHHHHH
Confidence            5432222111110000                                               01123457789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          402 LLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      ||+.||++|||++|+|+||||++..++
T Consensus       243 ~L~~dP~~R~t~~eil~hpwf~~~l~k  269 (271)
T d1nvra_         243 ILVENPSARITIPDIKKDRWYNKPLKK  269 (271)
T ss_dssp             HSCSSTTTSCCHHHHTTCTTTTCCCCC
T ss_pred             HcCCChhHCcCHHHHhcCHhhCcCCCC
Confidence            999999999999999999999987654

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-61  Score=447.36  Aligned_cols=253  Identities=27%  Similarity=0.417  Sum_probs=216.4

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .++|+++++||+|+||+||+|++..+|+.||||+++... ...+.+.+|+.++++++|+||     +++++++.+.+.+|
T Consensus        19 ~~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~~~~~~~~~~~~~   93 (293)
T d1yhwa1          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNI-----VNYLDSYLVGDELW   93 (293)
T ss_dssp             TTTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTB-----CCEEEEEEETTEEE
T ss_pred             ccccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCE-----eeEeEEEEECCEEE
Confidence            457999999999999999999999999999999987543 345678899999999998887     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      |||||| ||+|.+++.+.   .+++..++.++.||+.||+|||++|||||||||+|||++.+|                 
T Consensus        94 ivmEy~~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~-----------------  153 (293)
T d1yhwa1          94 VVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDG-----------------  153 (293)
T ss_dssp             EEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC-----------------
T ss_pred             EEEEecCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCC-----------------
Confidence            999999 99999988765   599999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                                .+||+|||+|......   ....+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+..+
T Consensus       154 ----------~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~  223 (293)
T d1yhwa1         154 ----------SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR  223 (293)
T ss_dssp             ----------CEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH
T ss_pred             ----------cEeeccchhheeeccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHH
Confidence                      5777777777654322   234589999999999999999999999999999999999999999887776


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+.......                                               ...+..++.++++||.+||+.
T Consensus       224 ~~~~~~~~~~~~-----------------------------------------------~~~~~~~s~~~~~li~~~L~~  256 (293)
T d1yhwa1         224 ALYLIATNGTPE-----------------------------------------------LQNPEKLSAIFRDFLNRCLDM  256 (293)
T ss_dssp             HHHHHHHHCSCC-----------------------------------------------CSSGGGSCHHHHHHHHHHTCS
T ss_pred             HHHHHHhCCCCC-----------------------------------------------CCCcccCCHHHHHHHHHHccC
Confidence            665554321110                                               011234577999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCC
Q 013941          406 DPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||++|||++|+|+||||+..
T Consensus       257 dP~~R~s~~eil~Hp~~~~~  276 (293)
T d1yhwa1         257 DVEKRGSAKELLQHQFLKIA  276 (293)
T ss_dssp             STTTSCCHHHHTTCGGGGGC
T ss_pred             ChhHCcCHHHHhcCHhhCCC
Confidence            99999999999999999753

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-61  Score=451.63  Aligned_cols=263  Identities=26%  Similarity=0.447  Sum_probs=210.9

Q ss_pred             cCCccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           86 IGENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        86 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      ..+++.++|++.+.||+|+||+||+|+++.+++.||||++.+..  .....+.+|+.++++++|+||     +++++++.
T Consensus         3 ~~edi~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnI-----v~l~~~~~   77 (307)
T d1a06a_           3 QAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNI-----VALDDIYE   77 (307)
T ss_dssp             ECSCGGGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTB-----CCEEEEEE
T ss_pred             CCCCCccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCC-----CcEEEEEE
Confidence            34667788999999999999999999999999999999997532  334556789999999988877     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccc
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLS  242 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~  242 (433)
                      +++.+||||||| ||+|.+++....  .+++..++.++.||+.||+|||++|||||||||+|||+...            
T Consensus        78 ~~~~~~lvmE~~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~------------  143 (307)
T d1a06a_          78 SGGHLYLIMQLVSGGELFDRIVEKG--FYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSL------------  143 (307)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHTCS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSS------------
T ss_pred             ECCEEEEEEeccCCCcHHHhhhccc--CCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeeccc------------
Confidence            999999999999 899999998764  79999999999999999999999999999999999999642            


Q ss_pred             cCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC
Q 013941          243 RSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT  320 (433)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~  320 (433)
                                  +.++.+||+|||+|......  ....+||+.|||||++.+..|+.++|||||||++|||++|..||.+
T Consensus       144 ------------~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~  211 (307)
T d1a06a_         144 ------------DEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYD  211 (307)
T ss_dssp             ------------STTCCEEECCC------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             ------------CCCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCC
Confidence                        24457899999998765433  2446899999999999999999999999999999999999999998


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      ....+....+.+....++.                                              .....+++++.+||.
T Consensus       212 ~~~~~~~~~i~~~~~~~~~----------------------------------------------~~~~~~s~~~~~li~  245 (307)
T d1a06a_         212 ENDAKLFEQILKAEYEFDS----------------------------------------------PYWDDISDSAKDFIR  245 (307)
T ss_dssp             SSHHHHHHHHHTTCCCCCT----------------------------------------------TTTTTSCHHHHHHHH
T ss_pred             CCHHHHHHHHhccCCCCCC----------------------------------------------ccccCCCHHHHHHHH
Confidence            8877766655543222211                                              112356789999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          401 GLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||+.||++|||++|+++||||++.
T Consensus       246 ~~L~~dP~~R~s~~eil~hp~~~~~  270 (307)
T d1a06a_         246 HLMEKDPEKRFTCEQALQHPWIAGD  270 (307)
T ss_dssp             HHSCSSGGGSCCHHHHHHSTTTTSS
T ss_pred             HHccCCHhHCcCHHHHhcCHhhCCC
Confidence            9999999999999999999999864

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-60  Score=441.99  Aligned_cols=262  Identities=26%  Similarity=0.465  Sum_probs=226.0

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-------hhHHHHHHHHHHHHHHHhCCCCCcceeEecc
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-------KYREAAMIEIDVLQRLARHDIGGTRCVQIRN  160 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~  160 (433)
                      +++.++|++.+.||+|+||+||+|+++.+|+.||||++++..       ...+.+.+|+.++++++|+||     |++++
T Consensus         6 ~~i~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~~~~   80 (293)
T d1jksa_           6 ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNV-----ITLHE   80 (293)
T ss_dssp             SCGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTB-----CCEEE
T ss_pred             CCcccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCC-----CcEEE
Confidence            456778999999999999999999999999999999986422       235678899999999998887     99999


Q ss_pred             eeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcc
Q 013941          161 WFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYK  239 (433)
Q Consensus       161 ~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~  239 (433)
                      ++.+.+.+||||||| +|+|.+++....  .+++..++.++.||+.||+|||++|||||||||+|||++.++.       
T Consensus        81 ~~~~~~~~~iv~E~~~gg~L~~~i~~~~--~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~-------  151 (293)
T d1jksa_          81 VYENKTDVILILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNV-------  151 (293)
T ss_dssp             EEECSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSS-------
T ss_pred             EEEECCEEEEEEEcCCCccccchhcccc--ccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCC-------
Confidence            999999999999999 999999998765  7999999999999999999999999999999999999977652       


Q ss_pred             ccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          240 FLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                      ....+||+|||+|......  .....||+.|+|||++.+..++.++|||||||++|||++|+.|
T Consensus       152 ----------------~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~P  215 (293)
T d1jksa_         152 ----------------PKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP  215 (293)
T ss_dssp             ----------------SSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------cccceEecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCC
Confidence                            2346899999998765433  3446899999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+.+..+.+..+.+....++.                                              .....++.++++
T Consensus       216 f~~~~~~~~~~~i~~~~~~~~~----------------------------------------------~~~~~~s~~~~~  249 (293)
T d1jksa_         216 FLGDTKQETLANVSAVNYEFED----------------------------------------------EYFSNTSALAKD  249 (293)
T ss_dssp             SCCSSHHHHHHHHHTTCCCCCH----------------------------------------------HHHTTSCHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCCCc----------------------------------------------hhcCCCCHHHHH
Confidence            9998887777666554333221                                              112345778999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||.+||+.||++|||++|+|+||||+..
T Consensus       250 li~~~L~~dP~~R~s~~eil~hp~~~~~  277 (293)
T d1jksa_         250 FIRRLLVKDPKKRMTIQDSLQHPWIKPK  277 (293)
T ss_dssp             HHHTTSCSSGGGSCCHHHHHHSTTTCC-
T ss_pred             HHHHHccCChhHCcCHHHHhcCcccCCC
Confidence            9999999999999999999999999863

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-61  Score=442.42  Aligned_cols=250  Identities=26%  Similarity=0.408  Sum_probs=214.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||+||+|++..+++.||||++++..    ...+.+.+|+.++++++|+||     +++++++.+++.
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~l~~~~~~~~~   82 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFF-----VKLYFTFQDDEK   82 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTB-----CCEEEEEECSSE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCe-----eEEEEEEEECCE
Confidence            46999999999999999999999999999999997432    344678899999999998887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||| ||+|.+++...+  .+++..++.++.||+.||+|||++|||||||||+|||++.+|               
T Consensus        83 ~~ivmEy~~gg~L~~~~~~~~--~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~---------------  145 (288)
T d1uu3a_          83 LYFGLSYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM---------------  145 (288)
T ss_dssp             EEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS---------------
T ss_pred             EEEEEEccCCCCHHHhhhccC--CCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCc---------------
Confidence            99999999 899999998765  799999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                  .+||+|||+|+.....     ....+||+.|+|||++.+..|+.++|||||||++|||++|..||.+.
T Consensus       146 ------------~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (288)
T d1uu3a_         146 ------------HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  213 (288)
T ss_dssp             ------------CEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ------------eEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc
Confidence                        5677777777654321     23358999999999999999999999999999999999999999988


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +.......+.+....+|                                                  ..+++++++||.+
T Consensus       214 ~~~~~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~~li~~  243 (288)
T d1uu3a_         214 NEYLIFQKIIKLEYDFP--------------------------------------------------EKFFPKARDLVEK  243 (288)
T ss_dssp             SHHHHHHHHHTTCCCCC--------------------------------------------------TTCCHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCCC--------------------------------------------------ccCCHHHHHHHHH
Confidence            87776665543322221                                                  2457789999999


Q ss_pred             hcccCCCCCCCHHH------HhcCCCCCCC
Q 013941          402 LLRYDPAERLKARE------ALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP~~R~ta~e------ll~hp~f~~~  425 (433)
                      ||+.||++|||++|      +++||||++-
T Consensus       244 ~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i  273 (288)
T d1uu3a_         244 LLVLDATKRLGCEEMEGYGPLKAHPFFESV  273 (288)
T ss_dssp             TSCSSGGGSTTSGGGTCHHHHHTSGGGTTC
T ss_pred             HccCCHhHCcCHHHHcCCHHHHcCCccCCC
Confidence            99999999999988      5899999863

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=4e-60  Score=449.43  Aligned_cols=260  Identities=28%  Similarity=0.437  Sum_probs=224.0

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      +-++|++++.||+|+||.||+|+++.+|+.||||++.... ...+.+.+|+.++++++|+||     |++++++.+++.+
T Consensus        24 il~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnI-----v~~~~~~~~~~~~   98 (350)
T d1koaa2          24 VLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL-----VNLHDAFEDDNEM   98 (350)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTB-----CCEEEEEEETTEE
T ss_pred             CccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCC-----CcEEEEEEECCEE
Confidence            3468999999999999999999999999999999997543 345677899999999998887     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ||||||| ||+|.+++.... ..+++..++.++.||+.||+|||++|||||||||+|||++.+                 
T Consensus        99 ~ivmE~~~gg~L~~~l~~~~-~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~-----------------  160 (350)
T d1koaa2          99 VMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTK-----------------  160 (350)
T ss_dssp             EEEECCCCSCBHHHHHTCTT-SCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESST-----------------
T ss_pred             EEEEEcCCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccC-----------------
Confidence            9999999 999999996543 369999999999999999999999999999999999999642                 


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                              .++.+||+|||+|.......  ....||+.|||||++.+..++.++|||||||++|+|++|+.||.+.+..+
T Consensus       161 --------~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~  232 (350)
T d1koaa2         161 --------RSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE  232 (350)
T ss_dssp             --------TSCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             --------CCCeEEEeecchheecccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHH
Confidence                    23468999999987655433  34689999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+......++..                                              ....+++++++||.+||+.
T Consensus       233 ~~~~i~~~~~~~~~~----------------------------------------------~~~~~s~~~~~li~~~L~~  266 (350)
T d1koaa2         233 TLRNVKSCDWNMDDS----------------------------------------------AFSGISEDGKDFIRKLLLA  266 (350)
T ss_dssp             HHHHHHHTCCCSCCG----------------------------------------------GGGGCCHHHHHHHHHHCCS
T ss_pred             HHHHHHhCCCCCCcc----------------------------------------------cccCCCHHHHHHHHHHccC
Confidence            777776543333211                                              1234577899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCc
Q 013941          406 DPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ||++|||++|+|+||||++..
T Consensus       267 dP~~R~t~~eil~hp~~~~~~  287 (350)
T d1koaa2         267 DPNTRMTIHQALEHPWLTPGN  287 (350)
T ss_dssp             SGGGSCCHHHHHHSTTTSCTT
T ss_pred             ChhHCcCHHHHhcCcccCCCC
Confidence            999999999999999998753

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-60  Score=441.47  Aligned_cols=254  Identities=26%  Similarity=0.476  Sum_probs=214.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc-hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI-NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +.|++++.||+|+||+||+|++..+++.||||+++.. ....+.+.+|++++++++|+||     |++++++.+.+.+||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnI-----v~l~~~~~~~~~~~l   86 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNI-----VKLLDAFYYENNLWI   86 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTB-----CCEEEEEEETTEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCC-----CeEEEEEeeCCeEEE
Confidence            4699999999999999999999999999999999753 3445678899999999998887     999999999999999


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||| +|+|.+++.+.. ..+++..++.++.||+.||+|||++|||||||||+|||++.+|                  
T Consensus        87 vmEy~~~g~L~~~~~~~~-~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~------------------  147 (288)
T d2jfla1          87 LIEFCAGGAVDAVMLELE-RPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDG------------------  147 (288)
T ss_dssp             EEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS------------------
T ss_pred             EEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCC------------------
Confidence            99999 999999987643 3699999999999999999999999999999999999997654                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhh-----CCCCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVIL-----GLGWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                               .+||+|||+|......   ....+||+.|+|||++.     +..|+.++|||||||++|||++|+.||.+.
T Consensus       148 ---------~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~  218 (288)
T d2jfla1         148 ---------DIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL  218 (288)
T ss_dssp             ---------CEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ---------CEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCC
Confidence                     5788888887654322   23468999999999985     446899999999999999999999999988


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +..+.+..+.....+.                                               ......+++++++||.+
T Consensus       219 ~~~~~~~~i~~~~~~~-----------------------------------------------~~~~~~~s~~~~~li~~  251 (288)
T d2jfla1         219 NPMRVLLKIAKSEPPT-----------------------------------------------LAQPSRWSSNFKDFLKK  251 (288)
T ss_dssp             CGGGHHHHHHHSCCCC-----------------------------------------------CSSGGGSCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCC-----------------------------------------------CCccccCCHHHHHHHHH
Confidence            7766655554321110                                               01123457799999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||+.||++|||++|+|+||||+.+
T Consensus       252 ~L~~dp~~R~t~~ell~hp~~~~~  275 (288)
T d2jfla1         252 CLEKNVDARWTTSQLLQHPFVTVD  275 (288)
T ss_dssp             HSCSSTTTSCCHHHHTTSGGGCCC
T ss_pred             HccCChhHCcCHHHHhcCcccCCC
Confidence            999999999999999999999865

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-60  Score=443.58  Aligned_cols=264  Identities=23%  Similarity=0.411  Sum_probs=229.8

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+-++|++.+.||+|+||+||+|+++.+++.||||+++........+.+|+.+|+.++|+||     ++++++|++++.+
T Consensus         2 ~~~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnI-----v~~~~~~~~~~~~   76 (321)
T d1tkia_           2 ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNI-----LHLHESFESMEEL   76 (321)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTB-----CCEEEEEEETTEE
T ss_pred             CCccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCC-----CeEEEEEEECCEE
Confidence            45678999999999999999999999999999999998766666778899999999998887     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ||||||| |++|.+++.... ..+++.+++.++.||+.||+|||++||+||||||+|||++.++                
T Consensus        77 ~lvmE~~~gg~L~~~i~~~~-~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~----------------  139 (321)
T d1tkia_          77 VMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRR----------------  139 (321)
T ss_dssp             EEEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSS----------------
T ss_pred             EEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCC----------------
Confidence            9999999 899999997653 3699999999999999999999999999999999999996533                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                               ...+||+|||++.......  ....||+.|+|||.+.+..|+.++|||||||++|+|++|..||.+.+..+
T Consensus       140 ---------~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~  210 (321)
T d1tkia_         140 ---------SSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ  210 (321)
T ss_dssp             ---------CCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             ---------ceEEEEcccchhhccccCCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHH
Confidence                     3468999999987654433  34689999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+.+....+|..                                              ....+++++++||.+||+.
T Consensus       211 ~~~~i~~~~~~~~~~----------------------------------------------~~~~~s~~~~~li~~~L~~  244 (321)
T d1tkia_         211 IIENIMNAEYTFDEE----------------------------------------------AFKEISIEAMDFVDRLLVK  244 (321)
T ss_dssp             HHHHHHHTCCCCCHH----------------------------------------------HHTTSCHHHHHHHHTTSCS
T ss_pred             HHHHHHhCCCCCChh----------------------------------------------hccCCCHHHHHHHHHHccC
Confidence            877776654443321                                              1234577899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCcccc
Q 013941          406 DPAERLKAREALRHPFFTRDVRRC  429 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~~~  429 (433)
                      ||++|||++|+++||||++...+.
T Consensus       245 dp~~R~s~~eil~hp~~~~~~~~~  268 (321)
T d1tkia_         245 ERKSRMTASEALQHPWLKQKIERV  268 (321)
T ss_dssp             SGGGSCCHHHHHHSHHHHSCGGGS
T ss_pred             ChhHCcCHHHHhcCHhhccCcccc
Confidence            999999999999999998765443

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=6e-60  Score=448.58  Aligned_cols=259  Identities=26%  Similarity=0.467  Sum_probs=223.6

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .++|++++.||+|+||+||+|++..+|+.||||+++... .....+.+|+.+|++++|+||     |+++++|.+++.+|
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnI-----v~~~~~~~~~~~~~  102 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL-----INLHDAFEDKYEMV  102 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTB-----CCEEEEEECSSEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCC-----CcEEEEEEECCEEE
Confidence            357999999999999999999999999999999987543 344567789999999988877     99999999999999


Q ss_pred             EEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          170 IVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       170 lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      |||||| ||+|.+++.... ..+++..++.++.||+.||+|||++|||||||||+|||++..                  
T Consensus       103 ivmE~~~gg~L~~~~~~~~-~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~------------------  163 (352)
T d1koba_         103 LILEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETK------------------  163 (352)
T ss_dssp             EEEECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESST------------------
T ss_pred             EEEEcCCCChHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccccccccccccc------------------
Confidence            999999 999999876543 469999999999999999999999999999999999999632                  


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                             ..+.+||+|||+|.......  ....||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+..+.
T Consensus       164 -------~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~  236 (352)
T d1koba_         164 -------KASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLET  236 (352)
T ss_dssp             -------TCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHH
T ss_pred             -------CCCeEEEeecccceecCCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence                   23468999999998765433  346899999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      +..+.+....+|.                                              .....+++++.+||.+||+.|
T Consensus       237 ~~~i~~~~~~~~~----------------------------------------------~~~~~~s~~~~~li~~~L~~d  270 (352)
T d1koba_         237 LQNVKRCDWEFDE----------------------------------------------DAFSSVSPEAKDFIKNLLQKE  270 (352)
T ss_dssp             HHHHHHCCCCCCS----------------------------------------------STTTTSCHHHHHHHHTTSCSS
T ss_pred             HHHHHhCCCCCCc----------------------------------------------ccccCCCHHHHHHHHHHccCC
Confidence            7777664433332                                              112345789999999999999


Q ss_pred             CCCCCCHHHHhcCCCCCCCc
Q 013941          407 PAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       407 P~~R~ta~ell~hp~f~~~~  426 (433)
                      |++|||++|+|+||||++..
T Consensus       271 p~~R~s~~eil~Hp~~~~~~  290 (352)
T d1koba_         271 PRKRLTVHDALEHPWLKGDH  290 (352)
T ss_dssp             GGGSCCHHHHHTSTTTSSCC
T ss_pred             hhHCcCHHHHhcCHhhCCCc
Confidence            99999999999999998753

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-61  Score=451.56  Aligned_cols=295  Identities=23%  Similarity=0.323  Sum_probs=213.6

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ..++|+++++||+|+||+||+|++..+|+.||+|+++..  ....+.+.+|+.+|++++|+||     |+++++|.+.++
T Consensus         4 ~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnI-----v~l~~~~~~~~~   78 (322)
T d1s9ja_           4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI-----VGFYGAFYSDGE   78 (322)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTB-----CCEEEEEECSSE
T ss_pred             CccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCC-----CcEEEEEEECCE
Confidence            346899999999999999999999999999999998743  3445678899999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      +||||||| +|+|.+++.+.+  .+++..++.++.||+.||+|||+ +||+||||||+|||++.+|              
T Consensus        79 ~~iVmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~--------------  142 (322)
T d1s9ja_          79 ISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRG--------------  142 (322)
T ss_dssp             EEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTC--------------
T ss_pred             EEEEEEcCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCC--------------
Confidence            99999999 899999998765  69999999999999999999997 5999999999999996554              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccC-CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQ-DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                   .+||+|||+|..... .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+..
T Consensus       143 -------------~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~  209 (322)
T d1s9ja_         143 -------------EIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAK  209 (322)
T ss_dssp             -------------CEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTT
T ss_pred             -------------CEEEeeCCCccccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence                         578888888875433 334569999999999999999999999999999999999999999876544


Q ss_pred             HHHH-HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          325 EHLA-MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       325 ~~~~-~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      +... .+....+...... .......... ........+ ............... .+   .......+.++++||.+||
T Consensus       210 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~---~~~~~~~s~~~~dli~~~L  282 (322)
T d1s9ja_         210 ELELMFGCQVEGDAAETP-PRPRTPGRPL-SSYGMDSRP-PMAIFELLDYIVNEP-PP---KLPSGVFSLEFQDFVNKCL  282 (322)
T ss_dssp             HHHHHC--------------------------------C-CCCHHHHHHHHHTSC-CC---CCCBTTBCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCcccCC-cccccccccc-ccccccccc-chhHHHHHhhhhccC-Cc---cCccccCCHHHHHHHHHHc
Confidence            3222 1222222111100 0000000000 000000000 000000011110000 00   0011235789999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCCCC
Q 013941          404 RYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       404 ~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ++||++||||+|+|+||||++.
T Consensus       283 ~~dP~~R~ta~e~L~Hpf~~~~  304 (322)
T d1s9ja_         283 IKNPAERADLKQLMVHAFIKRS  304 (322)
T ss_dssp             CSSTTTSCCHHHHHTSHHHHHH
T ss_pred             CCChhHCcCHHHHhhCHhhCcC
Confidence            9999999999999999999863

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-59  Score=430.31  Aligned_cols=253  Identities=23%  Similarity=0.415  Sum_probs=207.2

Q ss_pred             cCCCe-EEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-
Q 013941           90 LTPRY-RILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-  164 (433)
Q Consensus        90 ~~~~y-~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-  164 (433)
                      ..++| ++.++||+|+||+||+|++..+++.||+|++...   ....+.+.+|++++++++|+||     |++++++++ 
T Consensus         6 ~~gry~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~~~~~~~~~   80 (270)
T d1t4ha_           6 NDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI-----VRFYDSWEST   80 (270)
T ss_dssp             TTSCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEEEEE
T ss_pred             CCCCEEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCe-----eeEEEEEeec
Confidence            34455 7788999999999999999999999999998643   2345668899999999998887     999998864 


Q ss_pred             ---CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCC--cEecCCCCCcEEEeeCCcccccCc
Q 013941          165 ---RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELR--LIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       165 ---~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~--ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                         .+.+|+||||| +|+|.+++.+..  .+++..++.++.||+.||+|||++|  |+||||||+|||++.         
T Consensus        81 ~~~~~~~~ivmE~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~---------  149 (270)
T d1t4ha_          81 VKGKKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITG---------  149 (270)
T ss_dssp             SSSCEEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESS---------
T ss_pred             cccCCEEEEEEeCCCCCcHHHHHhccc--cccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeC---------
Confidence               46789999999 999999998765  7999999999999999999999999  999999999999953         


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEAL  317 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~p  317 (433)
                                       .+..+||+|||+|...... ....+||+.|||||++.+ .++.++|||||||++|||++|+.|
T Consensus       150 -----------------~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~P  211 (270)
T d1t4ha_         150 -----------------PTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYP  211 (270)
T ss_dssp             -----------------TTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             -----------------CCCCEEEeecCcceeccCCccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCC
Confidence                             2335788888888754433 345689999999999876 599999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |.+......+...... +..|.                                              ......++++.+
T Consensus       212 f~~~~~~~~~~~~i~~-~~~~~----------------------------------------------~~~~~~~~~~~~  244 (270)
T d1t4ha_         212 YSECQNAAQIYRRVTS-GVKPA----------------------------------------------SFDKVAIPEVKE  244 (270)
T ss_dssp             TTTCSSHHHHHHHHTT-TCCCG----------------------------------------------GGGGCCCHHHHH
T ss_pred             CCCcccHHHHHHHHHc-CCCCc----------------------------------------------ccCccCCHHHHH
Confidence            9876554433221110 11110                                              112345678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCC
Q 013941          398 LLQGLLRYDPAERLKAREALRHPFFT  423 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~hp~f~  423 (433)
                      ||.+||+.||++|||++|+|+||||+
T Consensus       245 li~~~l~~dp~~R~s~~ell~Hp~fk  270 (270)
T d1t4ha_         245 IIEGCIRQNKDERYSIKDLLNHAFFQ  270 (270)
T ss_dssp             HHHHHSCSSGGGSCCHHHHHTSGGGC
T ss_pred             HHHHHccCCHhHCcCHHHHhCCcccC
Confidence            99999999999999999999999996

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-59  Score=440.29  Aligned_cols=250  Identities=26%  Similarity=0.425  Sum_probs=220.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||+||+|+++.+|+.||||++++..    ...+.+.+|+.++++++|+||     +++++++.+.+.
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~~~~~~~~~~~   78 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFI-----IRMWGTFQDAQQ   78 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTB-----CCEEEEEECSSE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcCh-----hheeeeEeeCCe
Confidence            35999999999999999999999999999999997432    334678899999999999887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||| |++|..++....  .+++..++.++.||+.||+|||++|||||||||+|||++.+|               
T Consensus        79 ~~ivmE~~~gg~l~~~~~~~~--~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g---------------  141 (316)
T d1fota_          79 IFMIMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNG---------------  141 (316)
T ss_dssp             EEEEECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTS---------------
T ss_pred             eeeEeeecCCccccccccccc--cccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCC---------------
Confidence            99999999 999999998775  789999999999999999999999999999999999996554               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  .+||+|||+|..........+||+.|||||++.+..|+.++|||||||++|+|++|+.||.+.+..+.
T Consensus       142 ------------~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~  209 (316)
T d1fota_         142 ------------HIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKT  209 (316)
T ss_dssp             ------------CEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH
T ss_pred             ------------CEEEecCccceEeccccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHH
Confidence                        57888888888777666778999999999999999999999999999999999999999998887776


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+.+....+|                                                  ..+++++.++|.+||+.|
T Consensus       210 ~~~i~~~~~~~p--------------------------------------------------~~~s~~~~~li~~~L~~d  239 (316)
T d1fota_         210 YEKILNAELRFP--------------------------------------------------PFFNEDVKDLLSRLITRD  239 (316)
T ss_dssp             HHHHHHCCCCCC--------------------------------------------------TTSCHHHHHHHHHHTCSC
T ss_pred             HHHHHcCCCCCC--------------------------------------------------CCCCHHHHHHHHHHhhhC
Confidence            666554322222                                                  234678999999999999


Q ss_pred             CCCCC-----CHHHHhcCCCCCCC
Q 013941          407 PAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       407 P~~R~-----ta~ell~hp~f~~~  425 (433)
                      |++|+     |++|+++||||++.
T Consensus       240 p~~R~~~~r~t~~~il~Hp~f~~i  263 (316)
T d1fota_         240 LSQRLGNLQNGTEDVKNHPWFKEV  263 (316)
T ss_dssp             TTTCTTSSTTTTHHHHTSGGGSSC
T ss_pred             HHhccccchhhHHHHHcCcccccC
Confidence            99996     99999999999873

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-59  Score=442.45  Aligned_cols=249  Identities=25%  Similarity=0.436  Sum_probs=216.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||.||+|+++.+|+.||||++++..    ...+.+.+|+.+|++++|++|     +++++++++.+.
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~I-----v~l~~~~~~~~~   79 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFL-----TALKYAFQTHDR   79 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTB-----CCEEEEEECSSE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCE-----EEEEeeeccccc
Confidence            46999999999999999999999999999999997532    344667899999999988887     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||| ||+|.+++.+..  .+++..++.++.||+.||+|||++|||||||||+|||++.+|               
T Consensus        80 ~~iv~ey~~gg~L~~~~~~~~--~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g---------------  142 (337)
T d1o6la_          80 LCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDG---------------  142 (337)
T ss_dssp             EEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS---------------
T ss_pred             cccceeccCCCchhhhhhccc--CCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCC---------------
Confidence            99999999 999999998875  799999999999999999999999999999999999997665               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCCh
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHEN  323 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~  323 (433)
                                  .+||+|||+|+....   .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+.
T Consensus       143 ------------~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~  210 (337)
T d1o6la_         143 ------------HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH  210 (337)
T ss_dssp             ------------CEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             ------------CEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCH
Confidence                        567777777764332   22346899999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhc
Q 013941          324 LEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLL  403 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L  403 (433)
                      ......+......+|                                                  ..+++++++||.+||
T Consensus       211 ~~~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~dli~~~L  240 (337)
T d1o6la_         211 ERLFELILMEEIRFP--------------------------------------------------RTLSPEAKSLLAGLL  240 (337)
T ss_dssp             HHHHHHHHHCCCCCC--------------------------------------------------TTSCHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCC--------------------------------------------------ccCCHHHHHHHHhhc
Confidence            776665544322222                                                  345778999999999


Q ss_pred             ccCCCCCC-----CHHHHhcCCCCCC
Q 013941          404 RYDPAERL-----KAREALRHPFFTR  424 (433)
Q Consensus       404 ~~dP~~R~-----ta~ell~hp~f~~  424 (433)
                      ++||++|+     +++|+++||||++
T Consensus       241 ~~dP~~R~~~~~~~~~eil~Hp~f~~  266 (337)
T d1o6la_         241 KKDPKQRLGGGPSDAKEVMEHRFFLS  266 (337)
T ss_dssp             CSSTTTSTTCSTTTHHHHHTSGGGTT
T ss_pred             cCCchhhcccccccHHHHHcCccccc
Confidence            99999999     4999999999986

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.8e-60  Score=440.08  Aligned_cols=252  Identities=25%  Similarity=0.360  Sum_probs=211.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ..+|+++++||+|+||+||+|++..+++.||||+++...    ...+.+.+|+.++++++|+||     |++++++.+.+
T Consensus        14 ~~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnI-----v~~~~~~~~~~   88 (309)
T d1u5ra_          14 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNT-----IQYRGCYLREH   88 (309)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEEEETT
T ss_pred             HHhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCE-----eeEEEEEEECC
Confidence            346999999999999999999999999999999987532    334567899999999988877     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||| +++|..++....  .+++..++.++.||+.||.|||++|||||||||+|||++.++              
T Consensus        89 ~~~iv~E~~~~g~l~~~~~~~~--~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~--------------  152 (309)
T d1u5ra_          89 TAWLVMEYCLGSASDLLEVHKK--PLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPG--------------  152 (309)
T ss_dssp             EEEEEEECCSEEHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTT--------------
T ss_pred             EEEEEEEecCCCchHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCC--------------
Confidence            999999999 778876666554  799999999999999999999999999999999999997665              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhC---CCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILG---LGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   .+||+|||+|...... ....||+.|||||++.+   ..|+.++|||||||++|||++|..||.+.+
T Consensus       153 -------------~~Kl~DFG~a~~~~~~-~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~  218 (309)
T d1u5ra_         153 -------------LVKLGDFGSASIMAPA-NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN  218 (309)
T ss_dssp             -------------EEEECCCTTCBSSSSB-CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             -------------CEEEeecccccccCCC-CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCC
Confidence                         4677777777654433 34589999999999965   358999999999999999999999998887


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+.+..+.....+.+                                                ....+++++.+||.+|
T Consensus       219 ~~~~~~~i~~~~~~~~------------------------------------------------~~~~~s~~~~~li~~~  250 (309)
T d1u5ra_         219 AMSALYHIAQNESPAL------------------------------------------------QSGHWSEYFRNFVDSC  250 (309)
T ss_dssp             HHHHHHHHHHSCCCCC------------------------------------------------SCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCC------------------------------------------------CCCCCCHHHHHHHHHH
Confidence            7666555443211100                                                0124577999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCC
Q 013941          403 LRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |+.||++|||++|+|+||||+++
T Consensus       251 L~~dP~~Rpt~~ell~Hp~~~~~  273 (309)
T d1u5ra_         251 LQKIPQDRPTSEVLLKHRFVLRE  273 (309)
T ss_dssp             TCSSGGGSCCHHHHTTCHHHHSC
T ss_pred             CcCChhHCcCHHHHHhCHHhcCC
Confidence            99999999999999999999865

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-59  Score=443.79  Aligned_cols=250  Identities=26%  Similarity=0.435  Sum_probs=220.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||.||+|+++.+|+.||||++.+..    ...+.+.+|+.+|+.++|+||     +++++++.+.+.
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnI-----v~~~~~~~~~~~  115 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFL-----VKLEFSFKDNSN  115 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTB-----CCEEEEEECSSE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcE-----eecccccccccc
Confidence            57999999999999999999999999999999986432    334668899999999988877     999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +++||||+ +|+|.+++.+..  .+++..++.++.||+.||.|||++|||||||||+|||++.+|               
T Consensus       116 ~~~v~e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g---------------  178 (350)
T d1rdqe_         116 LYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQG---------------  178 (350)
T ss_dssp             EEEEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTS---------------
T ss_pred             cccccccccccchhhhHhhcC--CCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCC---------------
Confidence            99999999 999999998775  799999999999999999999999999999999999996554               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChHHH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEH  326 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~~  326 (433)
                                  .+||+|||+|+..........||+.|||||++.+..++.++|||||||++|||++|+.||.+.+....
T Consensus       179 ------------~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~  246 (350)
T d1rdqe_         179 ------------YIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQI  246 (350)
T ss_dssp             ------------CEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             ------------CEEeeeceeeeecccccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHH
Confidence                        57888888888776666677999999999999999999999999999999999999999998887776


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+......+|                                                  ..+++++.+||.+||+.|
T Consensus       247 ~~~i~~~~~~~p--------------------------------------------------~~~s~~~~~li~~~L~~d  276 (350)
T d1rdqe_         247 YEKIVSGKVRFP--------------------------------------------------SHFSSDLKDLLRNLLQVD  276 (350)
T ss_dssp             HHHHHHCCCCCC--------------------------------------------------TTCCHHHHHHHHHHSCSC
T ss_pred             HHHHhcCCCCCC--------------------------------------------------ccCCHHHHHHHHHHhhhC
Confidence            666654322222                                                  345779999999999999


Q ss_pred             CCCCC-----CHHHHhcCCCCCCC
Q 013941          407 PAERL-----KAREALRHPFFTRD  425 (433)
Q Consensus       407 P~~R~-----ta~ell~hp~f~~~  425 (433)
                      |++|+     |++|+++||||++.
T Consensus       277 P~kR~~~~r~t~~ell~Hp~f~~~  300 (350)
T d1rdqe_         277 LTKRFGNLKNGVNDIKNHKWFATT  300 (350)
T ss_dssp             TTTCTTSSTTTTHHHHTSGGGTTC
T ss_pred             HHhccccccccHHHHHcCccccCC
Confidence            99995     99999999999863

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-59  Score=430.44  Aligned_cols=250  Identities=23%  Similarity=0.370  Sum_probs=198.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc--CC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY--RN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~--~~  166 (433)
                      ++|++++.||+|+||+||+|+++.+|+.||||++....   ...+.+.+|++++++++|+||     +++++++.+  ++
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~~~~~~~~~~~~   78 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI-----VRYYDRIIDRTNT   78 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTB-----CCEEEEEEC----
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCE-----eeEEEEEEeCCCC
Confidence            46999999999999999999999999999999986532   344667889999999988877     999998854  56


Q ss_pred             eEEEEEccC-CCCHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHhCC-----cEecCCCCCcEEEeeCCcccccCc
Q 013941          167 HICIVFEKL-GPSLYDFLRKN--SYRSFPIDLVRELGRQLLESVAFMHELR-----LIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~~-----ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                      .+||||||| +|+|.+++.+.  ....+++..++.++.||+.||+|||++|     ||||||||+|||++.++.      
T Consensus        79 ~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~------  152 (269)
T d2java1          79 TLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQN------  152 (269)
T ss_dssp             CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSC------
T ss_pred             EEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCc------
Confidence            799999999 99999998642  2347999999999999999999999976     999999999999977664      


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~  315 (433)
                                           +||+|||+|......   ....+||+.|||||++.+..|+.++|||||||++|||++|+
T Consensus       153 ---------------------vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~  211 (269)
T d2java1         153 ---------------------VKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALM  211 (269)
T ss_dssp             ---------------------EEECCHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ---------------------EEEeeccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCC
Confidence                                 555555555443221   23358999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||.+.+..+....+.....  +                                               ..+..+++++
T Consensus       212 ~Pf~~~~~~~~~~~i~~~~~--~-----------------------------------------------~~~~~~s~~l  242 (269)
T d2java1         212 PPFTAFSQKELAGKIREGKF--R-----------------------------------------------RIPYRYSDEL  242 (269)
T ss_dssp             CSCCCSSHHHHHHHHHHTCC--C-----------------------------------------------CCCTTSCHHH
T ss_pred             CCCCCCCHHHHHHHHHcCCC--C-----------------------------------------------CCCcccCHHH
Confidence            99998877766655543211  0                                               0123457799


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCC
Q 013941          396 IDLLQGLLRYDPAERLKAREALRHPFF  422 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~hp~f  422 (433)
                      .+||.+||+.||++|||++|+++|||+
T Consensus       243 ~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         243 NEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             HHHHHHHcCCChhHCcCHHHHHhCCcC
Confidence            999999999999999999999999996

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=5.3e-58  Score=421.27  Aligned_cols=254  Identities=30%  Similarity=0.503  Sum_probs=215.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----------hhHHHHHHHHHHHHHHH-hCCCCCcceeEec
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----------KYREAAMIEIDVLQRLA-RHDIGGTRCVQIR  159 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----------~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~  159 (433)
                      .++|++.+.||+|+||+||+|++..+++.||||++++..          ...+.+.+|+.+++++. |+||     ++++
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnI-----v~~~   76 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNI-----IQLK   76 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTB-----CCEE
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCe-----EEEE
Confidence            468999999999999999999999999999999986432          23356788999999997 7777     9999


Q ss_pred             ceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          160 NWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       160 ~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                      +++.+++.+||||||| +|+|.+++...+  .+++..++.++.||+.||+|||++||+||||||+|||++.++       
T Consensus        77 ~~~~~~~~~~ivmE~~~~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~-------  147 (277)
T d1phka_          77 DTYETNTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDM-------  147 (277)
T ss_dssp             EEEECSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC-------
T ss_pred             eecccCcceEEEEEcCCCchHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCC-------
Confidence            9999999999999999 899999998765  799999999999999999999999999999999999997655       


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhC------CCCCccchHHHHHHHHHH
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILG------LGWNYPCDLWSVGCILVE  310 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlG~il~e  310 (433)
                                          .+||+|||++......  ....+||+.|+|||++.+      ..++.++||||+||++|+
T Consensus       148 --------------------~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilye  207 (277)
T d1phka_         148 --------------------NIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYT  207 (277)
T ss_dssp             --------------------CEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHH
T ss_pred             --------------------CeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhh
Confidence                                5677777777654432  234689999999999863      347889999999999999


Q ss_pred             HHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCC
Q 013941          311 LCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDH  390 (433)
Q Consensus       311 l~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (433)
                      |++|+.||.+.+.......+.+....++.                                              .....
T Consensus       208 ml~g~~Pf~~~~~~~~~~~i~~~~~~~~~----------------------------------------------~~~~~  241 (277)
T d1phka_         208 LLAGSPPFWHRKQMLMLRMIMSGNYQFGS----------------------------------------------PEWDD  241 (277)
T ss_dssp             HHHSSCSSCCSSHHHHHHHHHHTCCCCCT----------------------------------------------TTGGG
T ss_pred             hccCCCCCCCCCHHHHHHHHHhCCCCCCC----------------------------------------------ccccc
Confidence            99999999998877766666543222111                                              11234


Q ss_pred             chHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCC
Q 013941          391 SAGDLIDLLQGLLRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       391 ~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      +|+++++||.+||+.||++|||++|||+||||++
T Consensus       242 ~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~~  275 (277)
T d1phka_         242 YSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQ  275 (277)
T ss_dssp             SCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCT
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHHcCHHHHH
Confidence            5789999999999999999999999999999986

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-58  Score=428.20  Aligned_cols=283  Identities=32%  Similarity=0.517  Sum_probs=225.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|++++.||+|+||+||+|++..+|+.||||+++...   ...+.+.+|+.++++++|+||     +++++++.+++.+
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~I-----v~~~~~~~~~~~~   76 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI-----VKLLDVIHTENKL   76 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTB-----CCEEEEEEETTEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcE-----EEeccccccccce
Confidence            47999999999999999999999999999999996433   235678899999999988877     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      |+||||+++++.+++.......+++..++.++.||+.||+|||++|||||||||+|||++.++                 
T Consensus        77 ~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~-----------------  139 (298)
T d1gz8a_          77 YLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEG-----------------  139 (298)
T ss_dssp             EEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS-----------------
T ss_pred             eEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccC-----------------
Confidence            999999977888777766556799999999999999999999999999999999999996554                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCCC-CCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                .+||+|||.|......   .....||+.|+|||++.... ++.++|||||||++|+|++|+.||.+.+..
T Consensus       140 ----------~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~  209 (298)
T d1gz8a_         140 ----------AIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI  209 (298)
T ss_dssp             ----------CEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             ----------cceeccCCcceeccCCcccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHH
Confidence                      5677777777544322   23358999999999988766 578999999999999999999999999998


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +.+..+.+..+.+++.......... .     ....++...               ...........+.++.+||.+||+
T Consensus       210 ~~~~~i~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~---------------~~~~~~~~~~~s~~~~dll~~mL~  268 (298)
T d1gz8a_         210 DQLFRIFRTLGTPDEVVWPGVTSMP-D-----YKPSFPKWA---------------RQDFSKVVPPLDEDGRSLLSQMLH  268 (298)
T ss_dssp             HHHHHHHHHHCCCCTTTSTTGGGST-T-----CCTTSCCCC---------------CCCHHHHSTTCCHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCchhhcccccccc-c-----ccccccccc---------------ccchhhhccCCCHHHHHHHHHHcc
Confidence            9888888887776544322211100 0     000111000               001112234567899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCCCcc
Q 013941          405 YDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      .||++|||++|+|+||||++-.+
T Consensus       269 ~dP~~R~t~~ell~H~ff~~~~~  291 (298)
T d1gz8a_         269 YDPNKRISAKAALAHPFFQDVTK  291 (298)
T ss_dssp             SSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             CChhHCcCHHHHhCCHhhccCCC
Confidence            99999999999999999987644

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-58  Score=431.96  Aligned_cols=277  Identities=27%  Similarity=0.458  Sum_probs=214.0

Q ss_pred             EeccccccccEEEEEEEecCCCcEEEEEEeccchh------hHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           96 ILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINK------YREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        96 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~------~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      .+++||+|+||+||+|++..+|+.||||+++....      ..+.+.+|+.++++++|+||     |++++++.+++.+|
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnI-----v~~~~~~~~~~~~~   76 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNI-----IGLLDAFGHKSNIS   76 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTB-----CCEEEEECCTTCCE
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCE-----eEEEeeeccCCcee
Confidence            46899999999999999999999999999864322      23457899999999998887     99999999999999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||||.+++...+.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++                  
T Consensus        77 ivmE~~~~~~~~~~~~~~-~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~------------------  137 (299)
T d1ua2a_          77 LVFDFMETDLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENG------------------  137 (299)
T ss_dssp             EEEECCSEEHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC------------------
T ss_pred             ehhhhhcchHHhhhhhcc-cCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCC------------------
Confidence            999999444444443322 4799999999999999999999999999999999999997665                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENLE  325 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~~  325 (433)
                               .+||+|||+|......   ....+||+.|+|||++.+. .|+.++|||||||++|||++|.+||.+.+..+
T Consensus       138 ---------~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~  208 (299)
T d1ua2a_         138 ---------VLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD  208 (299)
T ss_dssp             ---------CEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             ---------ccccccCccccccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHH
Confidence                     4566666666543322   2335899999999998755 58999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..|.+..+.++...+.......       ....+....               ...........++++.+||.+||+.
T Consensus       209 ~l~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------------~~~~~~~~~~~s~~~~dll~~~L~~  266 (299)
T d1ua2a_         209 QLTRIFETLGTPTEEQWPDMCSLP-------DYVTFKSFP---------------GIPLHHIFSAAGDDLLDLIQGLFLF  266 (299)
T ss_dssp             HHHHHHHHHCCCCTTTSSSTTSST-------TCCCCCCCC---------------CCCHHHHCTTCCHHHHHHHHHHHCS
T ss_pred             HHHHHHHhcCCCChhhccchhccc-------hhhhhccCC---------------CCChHHhcccCCHHHHHHHHHHccC
Confidence            999999988876643221111000       000000000               0001122345678999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCCCCcc
Q 013941          406 DPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       406 dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ||++||||+|+|+||||++...
T Consensus       267 dP~~R~sa~e~L~Hp~f~~~p~  288 (299)
T d1ua2a_         267 NPCARITATQALKMKYFSNRPG  288 (299)
T ss_dssp             STTTSCCHHHHHTSGGGTSSSC
T ss_pred             ChhhCcCHHHHhCCHhhCCCCC
Confidence            9999999999999999998654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-57  Score=433.52  Aligned_cols=292  Identities=28%  Similarity=0.496  Sum_probs=233.9

Q ss_pred             CCceeeecCCc---cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCC
Q 013941           79 DGHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGG  152 (433)
Q Consensus        79 ~~~~~~~~~~~---~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~  152 (433)
                      .|+|...+++.   +.++|+++++||+|+||+||+|++..+|+.||||++++.   ....+.+.+|+.+|+.++|+|+  
T Consensus         2 ~~~~~~~~~~~~~~~~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpni--   79 (346)
T d1cm8a_           2 SGFYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENV--   79 (346)
T ss_dssp             CSBCCEECSSSEECCBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTB--
T ss_pred             CCcEEEeccCceeecCCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCe--
Confidence            46777777775   789999999999999999999999999999999999743   2345677899999999999887  


Q ss_pred             cceeEecceeccCC------eEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEE
Q 013941          153 TRCVQIRNWFDYRN------HICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENIL  226 (433)
Q Consensus       153 ~~~v~~~~~~~~~~------~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIl  226 (433)
                         |+++++|...+      ++|+|||||+.+|..++...   .+++..++.++.||+.||+|||++|||||||||+|||
T Consensus        80 ---v~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL  153 (346)
T d1cm8a_          80 ---IGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLA  153 (346)
T ss_dssp             ---CCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             ---eEEEEEeccCccccccceEEEEEecccccHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhh
Confidence               99999987644      67999999988898887654   5999999999999999999999999999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCC-CCCccchHHHHH
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVG  305 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG  305 (433)
                      ++.++                           .+||+|||+|.......+...||+.|+|||++.+. .++.++||||||
T Consensus       154 ~~~~~---------------------------~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG  206 (346)
T d1cm8a_         154 VNEDC---------------------------ELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVG  206 (346)
T ss_dssp             ECTTC---------------------------CEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHH
T ss_pred             ccccc---------------------------ccccccccceeccCCccccccccccccCHHHHcCCCCCCccchhhcch
Confidence            96554                           57888888888777777778999999999999875 568999999999


Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCc-hhhh
Q 013941          306 CILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL-PNLI  384 (433)
Q Consensus       306 ~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  384 (433)
                      |++|+|++|+.||.+.+....+..+....+.+|..+.............                    ...... ....
T Consensus       207 vil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~  266 (346)
T d1cm8a_         207 CIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYM--------------------KGLPELEKKDF  266 (346)
T ss_dssp             HHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHH--------------------HHSCCCCCCCG
T ss_pred             HHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhh--------------------ccCCcccccch
Confidence            9999999999999999999999999999998887665432211110000                    000000 0011


Q ss_pred             hhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          385 MQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       385 ~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      .......++++.+||.+||++||++||||+|+|+||||++-
T Consensus       267 ~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~  307 (346)
T d1cm8a_         267 ASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESL  307 (346)
T ss_dssp             GGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTT
T ss_pred             HHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcC
Confidence            12234567899999999999999999999999999999863

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-58  Score=429.27  Aligned_cols=249  Identities=25%  Similarity=0.409  Sum_probs=211.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHH-HHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQ-RLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~-~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++++.||+|+||+||+|+++.+++.||||++++.    ....+...+|..++. .++|+||     +++++++.+++
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~I-----v~~~~~~~~~~   76 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFL-----THMFCTFQTKE   76 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTB-----CCEEEEEECSS
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcE-----EEEEEEEccCC
Confidence            4699999999999999999999999999999999753    233455667777765 5777777     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+||||||| +|+|.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+|              
T Consensus        77 ~~yivmEy~~~g~L~~~i~~~~--~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~--------------  140 (320)
T d1xjda_          77 NLFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDG--------------  140 (320)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTS--------------
T ss_pred             ceeEEEeecCCCcHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCC--------------
Confidence            999999999 999999998765  799999999999999999999999999999999999997655              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccC---CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQ---DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHE  322 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~  322 (433)
                                   .+||+|||++.....   ......||+.|+|||++.+..|+.++|||||||++|||++|+.||.+.+
T Consensus       141 -------------~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~  207 (320)
T d1xjda_         141 -------------HIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD  207 (320)
T ss_dssp             -------------CEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             -------------ceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCC
Confidence                         467777777654322   2233589999999999999999999999999999999999999999988


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+....+......+|                                                  ..+++++.+||.+|
T Consensus       208 ~~~~~~~i~~~~~~~p--------------------------------------------------~~~s~~~~dli~~~  237 (320)
T d1xjda_         208 EEELFHSIRMDNPFYP--------------------------------------------------RWLEKEAKDLLVKL  237 (320)
T ss_dssp             HHHHHHHHHHCCCCCC--------------------------------------------------TTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCC--------------------------------------------------ccCCHHHHHHHHHh
Confidence            7776666644222211                                                  23577899999999


Q ss_pred             cccCCCCCCCHH-HHhcCCCCCC
Q 013941          403 LRYDPAERLKAR-EALRHPFFTR  424 (433)
Q Consensus       403 L~~dP~~R~ta~-ell~hp~f~~  424 (433)
                      |+.||++|||++ |+++||||++
T Consensus       238 L~~dP~~R~s~~~~l~~hpff~~  260 (320)
T d1xjda_         238 FVREPEKRLGVRGDIRQHPLFRE  260 (320)
T ss_dssp             SCSSGGGSBTTBSCGGGSGGGTT
T ss_pred             cccCCCCCcCHHHHHHhCchhcc
Confidence            999999999996 8999999986

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-57  Score=424.13  Aligned_cols=280  Identities=31%  Similarity=0.512  Sum_probs=218.3

Q ss_pred             CCCeEEeccccccccEEEEEEEecCC-CcEEEEEEeccch---hhHHHHHHHHHHHHHHH---hCCCCCcceeEecceec
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEK-KELVAIKIVRSIN---KYREAAMIEIDVLQRLA---RHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~-~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~---~~~i~~~~~v~~~~~~~  163 (433)
                      .++|+++++||+|+||+||+|++..+ ++.||||+++...   .......+|+.+++.+.   |+||     ++++++|.
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnI-----v~~~~~~~   80 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNV-----VRLFDVCT   80 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTB-----CCEEEEEE
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCc-----ceeeeeec
Confidence            36899999999999999999999765 6789999986432   22345668888888875   5555     99999874


Q ss_pred             -----cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          164 -----YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       164 -----~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                           ....++++|||+.+.+..+........+++..++.++.||+.||+|||++|||||||||+|||++.++       
T Consensus        81 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~-------  153 (305)
T d1blxa_          81 VSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSG-------  153 (305)
T ss_dssp             EEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTC-------
T ss_pred             ccccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCC-------
Confidence                 34689999999965555555555556799999999999999999999999999999999999997655       


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA  316 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~  316 (433)
                                          .+||+|||++.....  ......||+.|+|||++.+..|+.++|||||||++|||++|+.
T Consensus       154 --------------------~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~  213 (305)
T d1blxa_         154 --------------------QIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKP  213 (305)
T ss_dssp             --------------------CEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             --------------------CeeecchhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCC
Confidence                                467777777654332  2344689999999999999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+.+..+.+..+....+.++...+..........+..                       .............++.+.
T Consensus       214 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~s~~~~  270 (305)
T d1blxa_         214 LFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHS-----------------------KSAQPIEKFVTDIDELGK  270 (305)
T ss_dssp             SCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCC-----------------------CCCCCGGGTCCSCCHHHH
T ss_pred             CCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhcc-----------------------ccccchhhccccCCHHHH
Confidence            999999999999998888876543321111100000000                       001111223456688999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          397 DLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      +||.+||++||++||||+|+|+||||++-
T Consensus       271 dli~~mL~~dP~~R~sa~e~L~Hpff~~i  299 (305)
T d1blxa_         271 DLLLKCLTFNPAKRISAYSALSHPYFQDL  299 (305)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHTSGGGTTC
T ss_pred             HHHHHHCcCChhHCcCHHHHhcChhhcCc
Confidence            99999999999999999999999999863

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-59  Score=438.29  Aligned_cols=265  Identities=25%  Similarity=0.461  Sum_probs=210.8

Q ss_pred             ccCCCeEEec-cccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceecc--
Q 013941           89 NLTPRYRILS-KMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDY--  164 (433)
Q Consensus        89 ~~~~~y~~~~-~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~--  164 (433)
                      .+.++|++++ .||+|+||+||+|++..+++.||||+++..    ....+|+.++.++ +|+||     ++++++|++  
T Consensus         8 ~i~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~----~~~~~E~~~~~~~~~hpnI-----v~l~~~~~~~~   78 (335)
T d2ozaa1           8 AIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC----PKARREVELHWRASQCPHI-----VRIVDVYENLY   78 (335)
T ss_dssp             CGGGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS----HHHHHHHHHHHHHTTSTTB-----CCEEEEEEEEE
T ss_pred             CcccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc----HHHHHHHHHHHHhcCCCCC-----CeEEEEEeecc
Confidence            3446799886 599999999999999999999999998653    3467899987766 57666     999998865  


Q ss_pred             --CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          165 --RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       165 --~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                        ++.+||||||| ||+|.+++.+.+...+++..++.++.||+.||+|||++||+||||||+|||++..+          
T Consensus        79 ~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~----------  148 (335)
T d2ozaa1          79 AGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKR----------  148 (335)
T ss_dssp             TTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSS----------
T ss_pred             cCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccc----------
Confidence              57899999999 89999999876656799999999999999999999999999999999999997533          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                                    ....+||+|||+|......  ....+||+.|||||++.+..|+.++|||||||++|+|++|+.||.
T Consensus       149 --------------~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~  214 (335)
T d2ozaa1         149 --------------PNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFY  214 (335)
T ss_dssp             --------------TTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCE
T ss_pred             --------------ccccccccccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCC
Confidence                          3456899999998765432  344689999999999999899999999999999999999999998


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      +.+.......+......                    ....++.                      .....+++++.+||
T Consensus       215 ~~~~~~~~~~~~~~i~~--------------------~~~~~~~----------------------~~~~~~s~~~~~li  252 (335)
T d2ozaa1         215 SNHGLAISPGMKTRIRM--------------------GQYEFPN----------------------PEWSEVSEEVKMLI  252 (335)
T ss_dssp             ETTCC--------CCCS--------------------CSSSCCT----------------------THHHHSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhc--------------------CCCCCCC----------------------cccccCCHHHHHHH
Confidence            76554433322211100                    0000110                      01123577899999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          400 QGLLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      .+||+.||++|||+.|+++||||++....
T Consensus       253 ~~~L~~dP~~R~s~~eil~hp~~~~~~~~  281 (335)
T d2ozaa1         253 RNLLKTEPTQRMTITEFMNHPWIMQSTKV  281 (335)
T ss_dssp             HHHSCSSTTTSCCHHHHHHSHHHHTTTSS
T ss_pred             HHHccCChhHCcCHHHHHcCHHhhCCCCC
Confidence            99999999999999999999999876543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.3e-57  Score=431.90  Aligned_cols=256  Identities=24%  Similarity=0.380  Sum_probs=205.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch----hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN----KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      ++|++++.||+|+||.||+|++..+|+.||||++.+..    .....+.+|..+++.+++.  .|+|+|++++++.+.+.
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~--~hpnIv~l~~~~~~~~~   81 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG--DCPFIVCMSYAFHTPDK   81 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSS--CCTTBCCEEEEEECSSE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcC--CCCcEEEEEEEEEECCE
Confidence            46999999999999999999999999999999986422    2233455565555554422  23455999999999999


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      +|+||||| ||+|.+++.+..  .+++..++.++.||+.||+|||++|||||||||+|||++.+|               
T Consensus        82 ~~ivmE~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g---------------  144 (364)
T d1omwa3          82 LSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHG---------------  144 (364)
T ss_dssp             EEEEECCCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSS---------------
T ss_pred             EEEEEEecCCCcHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCC---------------
Confidence            99999999 999999998765  789999999999999999999999999999999999997655               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                  .+||+|||+|...... ....+||+.|+|||++.+ ..|+.++|||||||++|||++|+.||.+.+..
T Consensus       145 ------------~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~  212 (364)
T d1omwa3         145 ------------HVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK  212 (364)
T ss_dssp             ------------CEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSS
T ss_pred             ------------cEEEeeeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHH
Confidence                        5677777777654432 344689999999999975 56899999999999999999999999875543


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +............                                               ...+..+++++++||.+||+
T Consensus       213 ~~~~~~~~~~~~~-----------------------------------------------~~~~~~~s~~~~~li~~~L~  245 (364)
T d1omwa3         213 DKHEIDRMTLTMA-----------------------------------------------VELPDSFSPELRSLLEGLLQ  245 (364)
T ss_dssp             CHHHHHHHSSSCC-----------------------------------------------CCCCSSSCHHHHHHHHHHTC
T ss_pred             HHHHHHHhcccCC-----------------------------------------------CCCCCCCCHHHHHHHHHHcc
Confidence            3222222111110                                               01123567899999999999


Q ss_pred             cCCCCCCC-----HHHHhcCCCCCCC
Q 013941          405 YDPAERLK-----AREALRHPFFTRD  425 (433)
Q Consensus       405 ~dP~~R~t-----a~ell~hp~f~~~  425 (433)
                      .||++|||     |+|+++||||++.
T Consensus       246 ~dP~~R~t~~~~~a~eil~Hp~f~~i  271 (364)
T d1omwa3         246 RDVNRRLGCLGRGAQEVKESPFFRSL  271 (364)
T ss_dssp             SSTTTSTTTSSSTHHHHHTSGGGTTC
T ss_pred             cCHHHhCCCcccCHHHHHcCccccCC
Confidence            99999999     8999999999863

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-57  Score=416.95  Aligned_cols=250  Identities=25%  Similarity=0.430  Sum_probs=205.8

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-------hhHHHHHHHHHHHHHHHhCCCCCcceeEeccee
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-------KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWF  162 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~  162 (433)
                      +.++|++.+.||+|+||+||+|++..+|+.||||++++..       .....+.+|+.+++++++.   |+|++++++++
T Consensus         2 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~---h~nIv~~~~~~   78 (273)
T d1xwsa_           2 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSG---FSGVIRLLDWF   78 (273)
T ss_dssp             CTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSS---SCSBCCEEEEE
T ss_pred             CCCeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccC---CCCccEEEEEE
Confidence            4578999999999999999999999999999999986432       1123356899999999731   34459999999


Q ss_pred             ccCCeEEEEEccC-C-CCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          163 DYRNHICIVFEKL-G-PSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~-~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                      .+.+.+|+||||+ + +++.+++....  .+++..++.++.||+.||+|||++||+||||||+|||++.+          
T Consensus        79 ~~~~~~~lv~e~~~~~~~l~~~~~~~~--~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~----------  146 (273)
T d1xwsa_          79 ERPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLN----------  146 (273)
T ss_dssp             ECSSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETT----------
T ss_pred             eeCCeEEEEEEeccCcchHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecC----------
Confidence            9999999999999 4 58888887765  79999999999999999999999999999999999999643          


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccCC-CcccccCCcccchhhhhCCCC-CccchHHHHHHHHHHHHhCCCCC
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-HSYVVSTRHYRAPEVILGLGW-NYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~gt~~y~aPE~~~~~~~-~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                      ...+||+|||+|...... .+...||+.|+|||++.+..+ +.++|||||||++|||++|+.||
T Consensus       147 ----------------~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf  210 (273)
T d1xwsa_         147 ----------------RGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPF  210 (273)
T ss_dssp             ----------------TTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ----------------CCeEEECccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCC
Confidence                            235788888888754433 345689999999999987765 57899999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.+.      +.+..                                                  ......+++++++|
T Consensus       211 ~~~~~------i~~~~--------------------------------------------------~~~~~~~s~~~~~l  234 (273)
T d1xwsa_         211 EHDEE------IIRGQ--------------------------------------------------VFFRQRVSSECQHL  234 (273)
T ss_dssp             CSHHH------HHHCC--------------------------------------------------CCCSSCCCHHHHHH
T ss_pred             CCchH------Hhhcc--------------------------------------------------cCCCCCCCHHHHHH
Confidence            75321      11100                                                  01123457899999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          399 LQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      |.+||+.||++|||++|+++||||++..
T Consensus       235 i~~~L~~dp~~R~s~~eil~hp~~~~~~  262 (273)
T d1xwsa_         235 IRWCLALRPSDRPTFEEIQNHPWMQDVL  262 (273)
T ss_dssp             HHHHTCSSGGGSCCHHHHHTSGGGSSCC
T ss_pred             HHHHccCCHhHCcCHHHHhcCHhhCCCC
Confidence            9999999999999999999999999754

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.8e-56  Score=414.83  Aligned_cols=278  Identities=28%  Similarity=0.472  Sum_probs=217.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|+++++||+|+||+||+|+++ +|+.||||+++...   ...+.+.+|+.++++++|+||     +++++++.+.+..
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnI-----v~~~~~~~~~~~~   75 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI-----VKLYDVIHTKKRL   75 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTB-----CCEEEEEECSSCE
T ss_pred             CCceeccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcE-----EeeeeecccCCce
Confidence            58999999999999999999985 78999999996532   335678899999999988877     9999999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      +++||++++.+...+.... ..+++..++.++.||+.||+|||++|||||||||+|||++.++                 
T Consensus        76 ~i~~e~~~~~~~~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~-----------------  137 (286)
T d1ob3a_          76 VLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREG-----------------  137 (286)
T ss_dssp             EEEEECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTS-----------------
T ss_pred             eEEEEeehhhhHHHHHhhc-CCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCC-----------------
Confidence            9999999555555554433 4799999999999999999999999999999999999997655                 


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC---CcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCChH
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD---HSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHENL  324 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~~~  324 (433)
                                .+||+|||.|......   .....||+.|+|||.+.+. .++.++|||||||++|||++|+.||.+.+..
T Consensus       138 ----------~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~  207 (286)
T d1ob3a_         138 ----------ELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEA  207 (286)
T ss_dssp             ----------CEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             ----------CEEecccccceecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHH
Confidence                      5677777776553322   2334789999999999765 4689999999999999999999999999998


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +.+..+.+..+.++...............      .+..               .............++++.+||.+||+
T Consensus       208 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~---------------~~~~~~~~~~~~~s~~~~dli~~~L~  266 (286)
T d1ob3a_         208 DQLMRIFRILGTPNSKNWPNVTELPKYDP------NFTV---------------YEPLPWESFLKGLDESGIDLLSKMLK  266 (286)
T ss_dssp             HHHHHHHHHHCCCCTTTSTTGGGSTTCCT------TCCC---------------CCCCCGGGTCCSCCHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhCCCChhhccchhhhhhccc------cccc---------------ccCcchhhhcccCCHHHHHHHHHHcc
Confidence            88888888887765433222111100000      0000               00011122345567899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCCC
Q 013941          405 YDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       405 ~dP~~R~ta~ell~hp~f~~  424 (433)
                      +||++||||+|+|+||||++
T Consensus       267 ~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         267 LDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             SSTTTSCCHHHHHTSGGGGC
T ss_pred             CChhHCcCHHHHhcCcccCc
Confidence            99999999999999999985

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-55  Score=421.87  Aligned_cols=302  Identities=27%  Similarity=0.433  Sum_probs=226.2

Q ss_pred             CceeeecCCc---cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCc
Q 013941           80 GHYVFAIGEN---LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        80 ~~~~~~~~~~---~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      .+|++.+|+.   +.++|+++++||+|+||+||+|++..+|+.||||++++.   ......+.+|+.++++++|++|   
T Consensus         2 ~~~~~~~~~~~f~i~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnI---   78 (355)
T d2b1pa1           2 QFYSVEVGDSTFTVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI---   78 (355)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTB---
T ss_pred             CCEEEEeCCcceeecCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCe---
Confidence            5788999993   448999999999999999999999999999999999753   2344567899999999988877   


Q ss_pred             ceeEecceec------cCCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEE
Q 013941          154 RCVQIRNWFD------YRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILL  227 (433)
Q Consensus       154 ~~v~~~~~~~------~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli  227 (433)
                        ++++++|.      ...++|+|||||.+++.+.+.    ..+++..++.++.||+.||+|||++||+||||||+|||+
T Consensus        79 --v~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~----~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~  152 (355)
T d2b1pa1          79 --ISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV  152 (355)
T ss_dssp             --CCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEE
T ss_pred             --eEEEEEEecccccccCceeEEEEeccchHHHHhhh----cCCCHHHHHHHHHHHHHHHHHhhhcccccccCCcccccc
Confidence              99999885      457899999999777766664    258999999999999999999999999999999999999


Q ss_pred             eeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC--CcccccCCcccchhhhhCCCCCccchHHHHH
Q 013941          228 VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD--HSYVVSTRHYRAPEVILGLGWNYPCDLWSVG  305 (433)
Q Consensus       228 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  305 (433)
                      +.++                           .++++|||.+......  ....+||+.|+|||++.+..++.++||||+|
T Consensus       153 ~~~~---------------------------~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG  205 (355)
T d2b1pa1         153 KSDC---------------------------TLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVG  205 (355)
T ss_dssp             CTTC---------------------------CEEECCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHH
T ss_pred             cccc---------------------------ceeeechhhhhccccccccccccccccccChhhhcCCCCCCCccccccc
Confidence            7655                           4566667665543322  2345899999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          306 CILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       306 ~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      |++|+|++|+.||.+.+.......+....+..+..++.........+..........   ..    ...... .......
T Consensus       206 ~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~-~~~~~~~  277 (355)
T d2b1pa1         206 CIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL---TF----PKLFPD-SLFPADS  277 (355)
T ss_dssp             HHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCC---CH----HHHSCG-GGSCCSS
T ss_pred             chHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCcccccc---cc----cccccc-ccccccc
Confidence            999999999999999999999999988888777766555444433333322111000   00    000000 0000001


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ......++++.+||.+||++||++||||+|||+||||+..
T Consensus       278 ~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~  317 (355)
T d2b1pa1         278 EHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVW  317 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGG
T ss_pred             cccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCC
Confidence            1112346789999999999999999999999999999874

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-55  Score=408.43  Aligned_cols=246  Identities=19%  Similarity=0.304  Sum_probs=206.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.++||+|+||+||+|++..+++.||||+++......+.+.+|+.++++++|+||     |++++++.+++.+++|
T Consensus        17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnI-----v~~~~~~~~~~~~~iv   91 (287)
T d1opja_          17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNL-----VQLLGVCTREPPFYII   91 (287)
T ss_dssp             GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTB-----CCEEEEECSSSSCEEE
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCE-----ecCCccEeeCCeeEEE
Confidence            57999999999999999999999999999999998776667789999999999998887     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||| +|+|.+++.......+++..++.++.||+.||+|||++|||||||||+|||++.++                   
T Consensus        92 ~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~-------------------  152 (287)
T d1opja_          92 TEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENH-------------------  152 (287)
T ss_dssp             EECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG-------------------
T ss_pred             eecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCC-------------------
Confidence            9999 99999999877667899999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCC-CChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQT-HENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~-~~~~~  325 (433)
                              .+||+|||+|+......    ....||+.|+|||++.+..|+.++|||||||++|||++|..||.. .+...
T Consensus       153 --------~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~  224 (287)
T d1opja_         153 --------LVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ  224 (287)
T ss_dssp             --------CEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH
T ss_pred             --------cEEEccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHH
Confidence                    56777777776543322    224688999999999999999999999999999999997666544 33333


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+....                       .                          ...+..+++++.+||.+||+.
T Consensus       225 ~~~~i~~~~-----------------------~--------------------------~~~~~~~~~~l~~li~~cl~~  255 (287)
T d1opja_         225 VYELLEKDY-----------------------R--------------------------MERPEGCPEKVYELMRACWQW  255 (287)
T ss_dssp             HHHHHHTTC-----------------------C--------------------------CCCCTTCCHHHHHHHHHHTCS
T ss_pred             HHHHHhcCC-----------------------C--------------------------CCCCccchHHHHHHHHHHcCC
Confidence            322221110                       0                          011234577999999999999


Q ss_pred             CCCCCCCHHHHhc
Q 013941          406 DPAERLKAREALR  418 (433)
Q Consensus       406 dP~~R~ta~ell~  418 (433)
                      ||++|||++||++
T Consensus       256 dP~~Rps~~ei~~  268 (287)
T d1opja_         256 NPSDRPSFAEIHQ  268 (287)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             CHhHCcCHHHHHH
Confidence            9999999999976

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-55  Score=418.54  Aligned_cols=278  Identities=28%  Similarity=0.498  Sum_probs=219.9

Q ss_pred             CeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc------CC
Q 013941           93 RYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY------RN  166 (433)
Q Consensus        93 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~------~~  166 (433)
                      +|+.+++||+|+||+||+|++..+|+.||||++......   ..+|+.+|++++|+|+     ++++++|..      ..
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~---~~~Ei~il~~l~h~ni-----v~~~~~~~~~~~~~~~~   92 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF---KNRELQIMRKLDHCNI-----VRLRYFFYSSGEKKDEV   92 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS---CCHHHHHHHHCCCTTB-----CCEEEEEEEC--CCSCC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchH---HHHHHHHHHhcCCCCC-----CcEEEEEEecCccCCce
Confidence            599999999999999999999999999999999765432   3479999999988877     898888743      44


Q ss_pred             eEEEEEccCCCCHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          167 HICIVFEKLGPSLYDFLRK--NSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       167 ~~~lv~e~~~~~L~~~l~~--~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      ++|||||||++++.+.+..  .....+++..++.++.||+.||+|||++||+||||||+|||++.++             
T Consensus        93 ~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~-------------  159 (350)
T d1q5ka_          93 YLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDT-------------  159 (350)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTT-------------
T ss_pred             EEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCC-------------
Confidence            6899999996666555532  2334799999999999999999999999999999999999996543             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTH  321 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~  321 (433)
                                   ..+||+|||++.....  .....+||..|+|||.+.+. .++.++|||||||++|||++|..||...
T Consensus       160 -------------~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~  226 (350)
T d1q5ka_         160 -------------AVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD  226 (350)
T ss_dssp             -------------CCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred             -------------CceeEecccchhhccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCC
Confidence                         3578888888865433  33446899999999998764 6899999999999999999999999999


Q ss_pred             ChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHH
Q 013941          322 ENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQG  401 (433)
Q Consensus       322 ~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  401 (433)
                      +..+.+..+.+.+|..+...+........       ...++....              ...........++++.+||.+
T Consensus       227 ~~~~~l~~i~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~--------------~~~~~~~~~~~s~~~~dLl~~  285 (350)
T d1q5ka_         227 SGVDQLVEIIKVLGTPTREQIREMNPNYT-------EFKFPQIKA--------------HPWTKVFRPRTPPEAIALCSR  285 (350)
T ss_dssp             SHHHHHHHHHHHHCCCCHHHHHHHCC----------CCCCCCCCC--------------CCGGGTSCTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCChHHhhhhhccchh-------hcccccccc--------------CchhhhcccCCCHHHHHHHHH
Confidence            99999999999999887765544322111       011111000              000111223467899999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCCCC
Q 013941          402 LLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       402 ~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      ||++||++||||+|+|+||||++-
T Consensus       286 mL~~dP~~R~ta~e~L~Hp~f~~~  309 (350)
T d1q5ka_         286 LLEYTPTARLTPLEACAHSFFDEL  309 (350)
T ss_dssp             HSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred             HccCChhHCcCHHHHhcCHhhccc
Confidence            999999999999999999999864

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-54  Score=413.33  Aligned_cols=285  Identities=29%  Similarity=0.551  Sum_probs=217.4

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC-
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR-  165 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~-  165 (433)
                      .+.++|+++++||+|+||+||+|++..+|+.||||++++..  ...+.+.+|+.+|++++|+++     +++++++... 
T Consensus         5 ~i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~i-----v~~~~~~~~~~   79 (345)
T d1pmea_           5 DVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENI-----IGINDIIRAPT   79 (345)
T ss_dssp             CCCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTB-----CCCCEEECCSS
T ss_pred             CcCCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCC-----CcEEEEEeecc
Confidence            34578999999999999999999999999999999997533  345678899999999999888     7888777543 


Q ss_pred             ----CeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          166 ----NHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       166 ----~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                          ..+|++|++++++|.+++...   .+++..++.++.||+.||+|||++|||||||||+|||++.++          
T Consensus        80 ~~~~~~~~l~~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~----------  146 (345)
T d1pmea_          80 IEQMKDVYLVTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTC----------  146 (345)
T ss_dssp             TTTCCCEEEEEECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTC----------
T ss_pred             ccccceEEEEEeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCC----------
Confidence                457777776699999999765   599999999999999999999999999999999999997655          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhC-CCCCccchHHHHHHHHHHHHhC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILG-LGWNYPCDLWSVGCILVELCSG  314 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~-~~~~~~~DiwSlG~il~el~~g  314 (433)
                                       .+||+|||+|......      ....+||+.|+|||++.. ..++.++||||+||++|+|++|
T Consensus       147 -----------------~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g  209 (345)
T d1pmea_         147 -----------------DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSN  209 (345)
T ss_dssp             -----------------CEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHS
T ss_pred             -----------------CEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhC
Confidence                             4667777766543221      233579999999999855 4678999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhh-hhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchH
Q 013941          315 EALFQTHENLEHLAMMERVLGPLPHHMVIRADR-RAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAG  393 (433)
Q Consensus       315 ~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (433)
                      +.||.+.+..+....+......+.......... ....+..     .++.               .............+.
T Consensus       210 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------------~~~~~~~~~~~~~s~  269 (345)
T d1pmea_         210 RPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLL-----SLPH---------------KNKVPWNRLFPNADS  269 (345)
T ss_dssp             SCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHH-----TSCC---------------CCCCCHHHHCTTSCH
T ss_pred             CCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccc-----cCCc---------------cCCCCHHHhCCCCCH
Confidence            999999988888888877776665443221100 0000000     0000               000011122345677


Q ss_pred             HHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCccc
Q 013941          394 DLIDLLQGLLRYDPAERLKAREALRHPFFTRDVRR  428 (433)
Q Consensus       394 ~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~~  428 (433)
                      ++++||.+||+.||++||||+|+|+||||++....
T Consensus       270 ~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~~~  304 (345)
T d1pmea_         270 KALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDP  304 (345)
T ss_dssp             HHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             HHHHHHHHHccCChhHCcCHHHHhcCHhhccCCCC
Confidence            89999999999999999999999999999965443

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-55  Score=412.40  Aligned_cols=284  Identities=26%  Similarity=0.447  Sum_probs=212.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc----
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY----  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~----  164 (433)
                      ++|+++++||+|+||+||+|++..+|+.||||++...   ......+.+|+.+|++++|+|+     +++++++..    
T Consensus        10 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~ni-----i~~~~~~~~~~~~   84 (318)
T d3blha1          10 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV-----VNLIEICRTKASP   84 (318)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTB-----CCEEEEEEC----
T ss_pred             CCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCc-----cceEeeeeccccc
Confidence            6899999999999999999999999999999998643   2344678899999999999888     777776643    


Q ss_pred             ----CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccc
Q 013941          165 ----RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKF  240 (433)
Q Consensus       165 ----~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~  240 (433)
                          .+++|+||||+++.+....... ...+++..++.++.||+.||+|||++||+||||||+|||++.++.        
T Consensus        85 ~~~~~~~~~iv~e~~~~~~~~~~~~~-~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~--------  155 (318)
T d3blha1          85 YNRCKGSIYLVFDFCEHDLAGLLSNV-LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGV--------  155 (318)
T ss_dssp             ------CEEEEEECCCEEHHHHHTCT-TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSC--------
T ss_pred             ccccCceEEEEEeccCCCccchhhhc-ccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCc--------
Confidence                4578999999965555544433 247999999999999999999999999999999999999977664        


Q ss_pred             cccCCCCCCcccCCCCCCCeeeecCCCCccccC-------CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHH
Q 013941          241 LSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-------DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-------~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~  312 (433)
                                         +||+|||++.....       .....+||+.|+|||++.+. .++.++|||||||++|||+
T Consensus       156 -------------------~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~  216 (318)
T d3blha1         156 -------------------LKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMW  216 (318)
T ss_dssp             -------------------EEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHH
T ss_pred             -------------------EEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHh
Confidence                               55555555533221       12235799999999999875 6899999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      +|+.||.+.++......+.+..+.++..............       .+...............           ....+
T Consensus       217 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-----------~~~~~  278 (318)
T d3blha1         217 TRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYE-------KLELVKGQKRKVKDRLK-----------AYVRD  278 (318)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC--------------CCSSCCBCHHHHHH-----------HHHCC
T ss_pred             hCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhh-------hhcccccccccchhhhc-----------cccCC
Confidence            9999999999999999999988887754322211100000       00000000000000000           01125


Q ss_pred             HHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCc
Q 013941          393 GDLIDLLQGLLRYDPAERLKAREALRHPFFTRDV  426 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~  426 (433)
                      ++++|||.+||++||++||||+|+|+||||+.+.
T Consensus       279 ~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~p  312 (318)
T d3blha1         279 PYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP  312 (318)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSSS
T ss_pred             HHHHHHHHHHCcCChhHCcCHHHHHcChhhccCC
Confidence            6788999999999999999999999999999753

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-55  Score=416.91  Aligned_cols=293  Identities=26%  Similarity=0.487  Sum_probs=226.0

Q ss_pred             CceeeecCC---ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCc
Q 013941           80 GHYVFAIGE---NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGT  153 (433)
Q Consensus        80 ~~~~~~~~~---~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~  153 (433)
                      ++|...++.   .+.++|+++++||+|+||+||+|++..+|+.||||++++..   ...+.+.+|+.+|++++|+|+   
T Consensus         3 ~~~~~~~~~~~~~~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~i---   79 (348)
T d2gfsa1           3 TFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENV---   79 (348)
T ss_dssp             CEEEEECSSSEEEEETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTB---
T ss_pred             CcEEEecCCccccCCCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCe---
Confidence            344444433   23578999999999999999999999999999999997532   334567899999999998887   


Q ss_pred             ceeEecceecc------CCeEEEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEE
Q 013941          154 RCVQIRNWFDY------RNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILL  227 (433)
Q Consensus       154 ~~v~~~~~~~~------~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli  227 (433)
                        +++++++..      .+.+++++++++++|.+++..+   .+++..++.++.||+.||+|||++||+||||||+|||+
T Consensus        80 --v~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~~---~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi  154 (348)
T d2gfsa1          80 --IGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAV  154 (348)
T ss_dssp             --CCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEE
T ss_pred             --eeEEEEEeeccccccCceEEEEEeecCCchhhhcccc---cccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccc
Confidence              888888753      3345555555599999998654   59999999999999999999999999999999999999


Q ss_pred             eeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCC-CCccchHHHHHH
Q 013941          228 VSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLG-WNYPCDLWSVGC  306 (433)
Q Consensus       228 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~  306 (433)
                      +.+|                           .+|++|||.+...........||+.|+|||++.+.. ++.++|||||||
T Consensus       155 ~~~~---------------------------~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv  207 (348)
T d2gfsa1         155 NEDC---------------------------ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC  207 (348)
T ss_dssp             CTTC---------------------------CEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHH
T ss_pred             cccc---------------------------cccccccchhcccCcccccccccccccCchhhcCCccCCcccchhhhhH
Confidence            7655                           578888888877666666678999999999987764 689999999999


Q ss_pred             HHHHHHhCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchh-hhh
Q 013941          307 ILVELCSGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN-LIM  385 (433)
Q Consensus       307 il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  385 (433)
                      ++|+|++|+.||.+.+.......+.+..+..+..............+...                    ....+. ...
T Consensus       208 ~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~  267 (348)
T d2gfsa1         208 IMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQS--------------------LTQMPKMNFA  267 (348)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTT--------------------SCCCCCCCHH
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhh--------------------cccCCCcchh
Confidence            99999999999999999999999988888777655433221111110000                    000000 001


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCCcc
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDVR  427 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~~~  427 (433)
                      ......++++++||.+||+.||++||||+|+|+||||++...
T Consensus       268 ~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~  309 (348)
T d2gfsa1         268 NVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  309 (348)
T ss_dssp             HHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             hhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCC
Confidence            122456789999999999999999999999999999997543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-55  Score=398.57  Aligned_cols=245  Identities=24%  Similarity=0.373  Sum_probs=199.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.+.||+|+||+||+|++. +++.||||+++......+.+.+|+.++++++|+||     +++++++...+.+++|
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnI-----v~~~g~~~~~~~~~lv   78 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKL-----VQLYGVCLEQAPICLV   78 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEET-TTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTB-----CCEEEEECSSSSCEEE
T ss_pred             HHcEEEEEEeeCCCeEEEEEEEC-CCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCc-----ccccceeccCCceEEE
Confidence            46999999999999999999975 56789999998777677889999999999999888     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||| +|+|.+++.... ..+++..+..++.||+.||+|||+++|+||||||+|||++.++                   
T Consensus        79 ~E~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~-------------------  138 (263)
T d1sm2a_          79 FEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQ-------------------  138 (263)
T ss_dssp             EECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGG-------------------
T ss_pred             EEecCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCC-------------------
Confidence            9999 999999987654 4689999999999999999999999999999999999997665                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                              .+||+|||+++......    ....||+.|+|||++.+..|+.++|||||||++|||+| |.+||...+..+
T Consensus       139 --------~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~  210 (263)
T d1sm2a_         139 --------VIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE  210 (263)
T ss_dssp             --------CEEECSCC------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHH
T ss_pred             --------CeEecccchheeccCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHH
Confidence                    46677777665433221    22578999999999999999999999999999999999 577777666665


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+......                                                 ..+...++++.+||.+||+.
T Consensus       211 ~~~~i~~~~~~-------------------------------------------------~~p~~~~~~l~~li~~cl~~  241 (263)
T d1sm2a_         211 VVEDISTGFRL-------------------------------------------------YKPRLASTHVYQIMNHCWKE  241 (263)
T ss_dssp             HHHHHHHTCCC-------------------------------------------------CCCTTSCHHHHHHHHHHTCS
T ss_pred             HHHHHHhcCCC-------------------------------------------------CCccccCHHHHHHHHHHccC
Confidence            55554432110                                                 01123467899999999999


Q ss_pred             CCCCCCCHHHHhcC
Q 013941          406 DPAERLKAREALRH  419 (433)
Q Consensus       406 dP~~R~ta~ell~h  419 (433)
                      ||++|||++||++|
T Consensus       242 ~p~~Rps~~~il~~  255 (263)
T d1sm2a_         242 RPEDRPAFSRLLRQ  255 (263)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             CHhHCcCHHHHHHH
Confidence            99999999999986

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.8e-55  Score=403.71  Aligned_cols=255  Identities=23%  Similarity=0.305  Sum_probs=201.9

Q ss_pred             CccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           88 ENLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        88 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      ..+.++|++.+.||+|+||+||+|++..+|+.||||+++..    ......+.+|+.+++.++|+||     +++++++.
T Consensus         3 ~~l~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpni-----v~~~~~~~   77 (277)
T d1o6ya_           3 SHLSDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAI-----VAVYDTGE   77 (277)
T ss_dssp             SEETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEEE
T ss_pred             cCccceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCC-----Ccccceee
Confidence            34678899999999999999999999999999999999743    2334568899999999998887     99999887


Q ss_pred             cC----CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCc
Q 013941          164 YR----NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDY  238 (433)
Q Consensus       164 ~~----~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~  238 (433)
                      ..    ..+||||||| |++|.+++...+  .+++..++.++.||+.||+|||++|||||||||+|||++.++.      
T Consensus        78 ~~~~~~~~~~lvmE~~~g~~L~~~~~~~~--~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~------  149 (277)
T d1o6ya_          78 AETPAGPLPYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNA------  149 (277)
T ss_dssp             EECSSSEEEEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSC------
T ss_pred             eccCCCceEEEEEECCCCCEehhhhcccC--CCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCcccc------
Confidence            54    3589999999 899999998765  7999999999999999999999999999999999999987765      


Q ss_pred             cccccCCCCCCcccCCCCCCCeeeecCCCCccccC------CCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHH
Q 013941          239 KFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ------DHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELC  312 (433)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~  312 (433)
                                           .+|+|||.+.....      .....+||+.|+|||++.+..++.++|||||||++|||+
T Consensus       150 ---------------------~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyell  208 (277)
T d1o6ya_         150 ---------------------VKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVL  208 (277)
T ss_dssp             ---------------------EEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             ---------------------ceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHH
Confidence                                 45555555432211      223358999999999999999999999999999999999


Q ss_pred             hCCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCch
Q 013941          313 SGEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSA  392 (433)
Q Consensus       313 ~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (433)
                      +|+.||.+.+..+.+..+.+....+|                                              ......++
T Consensus       209 tG~~Pf~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~s  242 (277)
T d1o6ya_         209 TGEPPFTGDSPVSVAYQHVREDPIPP----------------------------------------------SARHEGLS  242 (277)
T ss_dssp             HSSCSCCCSSHHHHHHHHHHCCCCCG----------------------------------------------GGTSSSCC
T ss_pred             hCCCCCCCcCHHHHHHHHHhcCCCCC----------------------------------------------chhccCCC
Confidence            99999998877766555443211111                                              11224567


Q ss_pred             HHHHHHHHHhcccCCCCCC-CHHHHhcCCCCC
Q 013941          393 GDLIDLLQGLLRYDPAERL-KAREALRHPFFT  423 (433)
Q Consensus       393 ~~l~~li~~~L~~dP~~R~-ta~ell~hp~f~  423 (433)
                      +++.+||.+||+.||++|| |+++++ |+|.+
T Consensus       243 ~~l~~li~~~L~~dp~~R~~sa~~l~-~~l~r  273 (277)
T d1o6ya_         243 ADLDAVVLKALAKNPENRYQTAAEMR-ADLVR  273 (277)
T ss_dssp             HHHHHHHHHHTCSSGGGSCSSHHHHH-HHHHH
T ss_pred             HHHHHHHHHHccCCHhHCHhHHHHHH-HHHHH
Confidence            8999999999999999999 566654 56643

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-55  Score=404.19  Aligned_cols=250  Identities=24%  Similarity=0.374  Sum_probs=205.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.++||+|+||+||+|++. +++.||||+++......+.+.+|+.++.+++|+||     |++++++.+ +.+++|
T Consensus        13 ~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnI-----v~~~g~~~~-~~~~iv   85 (272)
T d1qpca_          13 ETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRL-----VRLYAVVTQ-EPIYII   85 (272)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTB-----CCEEEEECS-SSCEEE
T ss_pred             HHeEEeEEEecCCCcEEEEEEEC-CCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCE-----eEEEeeecc-CCeEEE
Confidence            57999999999999999999975 57789999998766667789999999999999887     999998765 567999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||| +|+|.+++.......+++..+..++.||+.||+|||++||+||||||+|||++.++                   
T Consensus        86 ~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~-------------------  146 (272)
T d1qpca_          86 TEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTL-------------------  146 (272)
T ss_dssp             EECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS-------------------
T ss_pred             EEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeeccc-------------------
Confidence            9999 99999987654434699999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhC-CCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG-EALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g-~~pf~~~~~~~  325 (433)
                              .+||+|||+|+.....    .....||+.|+|||++.+..++.++|||||||++|||+|| .+||...+..+
T Consensus       147 --------~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~  218 (272)
T d1qpca_         147 --------SCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE  218 (272)
T ss_dssp             --------CEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH
T ss_pred             --------ceeeccccceEEccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHH
Confidence                    5677777777654332    2235789999999999988999999999999999999995 55566655555


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+......                                                 ..+..++.++.+||.+||+.
T Consensus       219 ~~~~i~~~~~~-------------------------------------------------~~p~~~~~~l~~li~~cl~~  249 (272)
T d1qpca_         219 VIQNLERGYRM-------------------------------------------------VRPDNCPEELYQLMRLCWKE  249 (272)
T ss_dssp             HHHHHHTTCCC-------------------------------------------------CCCTTCCHHHHHHHHHHTCS
T ss_pred             HHHHHHhcCCC-------------------------------------------------CCcccChHHHHHHHHHHcCC
Confidence            44443321100                                                 01234577899999999999


Q ss_pred             CCCCCCCHHHHhc--CCCCCC
Q 013941          406 DPAERLKAREALR--HPFFTR  424 (433)
Q Consensus       406 dP~~R~ta~ell~--hp~f~~  424 (433)
                      ||++|||++||++  |+||+.
T Consensus       250 ~P~~Rpt~~ei~~~L~~~fts  270 (272)
T d1qpca_         250 RPEDRPTFDYLRSVLEDFFTA  270 (272)
T ss_dssp             SGGGSCCHHHHHHHHHHHHHH
T ss_pred             CHhHCcCHHHHHHHhhhhhhc
Confidence            9999999999998  888864

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-54  Score=401.26  Aligned_cols=278  Identities=29%  Similarity=0.457  Sum_probs=219.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch---hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN---KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      ++|+++++||+|+||+||+|++..+++.||||+++...   .....+.+|+.+++.++|+|+     +++++++.+.+..
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~ni-----v~~~~~~~~~~~~   76 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI-----VRLHDVLHSDKKL   76 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTB-----CCEEEEEECSSEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCE-----Eeeccccccccce
Confidence            58999999999999999999999999999999986432   345678899999999988877     9999999999999


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++|++++ +++|..++....  .+++..++.++.|++.||+|||++|||||||||+|||++.++                
T Consensus        77 ~iv~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~----------------  138 (292)
T d1unla_          77 TLVFEFCDQDLKKYFDSCNG--DLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNG----------------  138 (292)
T ss_dssp             EEEEECCSEEHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC----------------
T ss_pred             eEEeeecccccccccccccc--ccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCC----------------
Confidence            9999999 777777776554  789999999999999999999999999999999999996544                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCC---cccccCCcccchhhhhCCC-CCccchHHHHHHHHHHHHhCCCCC-CCCC
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDH---SYVVSTRHYRAPEVILGLG-WNYPCDLWSVGCILVELCSGEALF-QTHE  322 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~---~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~el~~g~~pf-~~~~  322 (433)
                                 .+||+|||.+.......   ....++..|+|||++.+.. ++.++|||||||++|||++|+.|| .+.+
T Consensus       139 -----------~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~  207 (292)
T d1unla_         139 -----------ELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND  207 (292)
T ss_dssp             -----------CEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSS
T ss_pred             -----------ceeeeecchhhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCC
Confidence                       57888888876544332   2346788999999998765 689999999999999999999885 5666


Q ss_pred             hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          323 NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       323 ~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      ..+.+..+....+.++..............     .....                .............++.+.+||.+|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----------------~~~~~~~~~~~~~s~~~~dll~~m  266 (292)
T d1unla_         208 VDDQLKRIFRLLGTPTEEQWPSMTKLPDYK-----PYPMY----------------PATTSLVNVVPKLNATGRDLLQNL  266 (292)
T ss_dssp             HHHHHHHHHHHHCCCCTTTCTTGGGSTTCC-----CCCCC----------------CTTCCCTTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCChhhhhhhhhccccc-----ccccc----------------cccchhhhccccCCHHHHHHHHHH
Confidence            677777777777766543322211110000     00000                000111122345677899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCC
Q 013941          403 LRYDPAERLKAREALRHPFFTR  424 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~  424 (433)
                      |+.||++||||+|+|+||||++
T Consensus       267 L~~dP~~R~sa~e~L~Hp~f~~  288 (292)
T d1unla_         267 LKCNPVQRISAEEALQHPYFSD  288 (292)
T ss_dssp             SCSSGGGSCCHHHHTTSGGGSS
T ss_pred             ccCChhHCcCHHHHhcChhhcC
Confidence            9999999999999999999986

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-54  Score=393.98  Aligned_cols=245  Identities=20%  Similarity=0.325  Sum_probs=207.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.++||+|+||+||+|+++ +++.||||++++.....+.+.+|+.++.+++|+||     +++++++.+.+.+++|
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnI-----v~~~g~~~~~~~~~iv   77 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKL-----VQLYGVCTKQRPIFII   77 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEET-TTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTB-----CCEEEEECCSSSEEEE
T ss_pred             HHCEEeEEEecCCCeEEEEEEEC-CCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCce-----eeEEEEEeeCCceEEE
Confidence            46899999999999999999974 77889999998777777889999999999998887     9999999999999999


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||+ +|+|.+++.... ..+++..+..++.||++||+|||++||+||||||+|||++.++                   
T Consensus        78 ~Ey~~~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~-------------------  137 (258)
T d1k2pa_          78 TEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQG-------------------  137 (258)
T ss_dssp             EECCTTEEHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTC-------------------
T ss_pred             EEccCCCcHHHhhhccc-cCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCC-------------------
Confidence            9999 899999976543 3689999999999999999999999999999999999997655                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCCC----cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQDH----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~  325 (433)
                              .+||+|||++.......    ....||..|+|||++.+..++.++|||||||++|||+| |+.||.+.+..+
T Consensus       138 --------~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~  209 (258)
T d1k2pa_         138 --------VVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE  209 (258)
T ss_dssp             --------CEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH
T ss_pred             --------cEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHH
Confidence                    46777777765433221    22468999999999999999999999999999999998 899999888777


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      ....+.+.....                                                 .+...+.++.+||.+||+.
T Consensus       210 ~~~~i~~~~~~~-------------------------------------------------~p~~~~~~l~~li~~cl~~  240 (258)
T d1k2pa_         210 TAEHIAQGLRLY-------------------------------------------------RPHLASEKVYTIMYSCWHE  240 (258)
T ss_dssp             HHHHHHTTCCCC-------------------------------------------------CCTTCCHHHHHHHHHTTCS
T ss_pred             HHHHHHhCCCCC-------------------------------------------------CcccccHHHHHHHHHHccC
Confidence            665554321110                                                 1123467899999999999


Q ss_pred             CCCCCCCHHHHhcC
Q 013941          406 DPAERLKAREALRH  419 (433)
Q Consensus       406 dP~~R~ta~ell~h  419 (433)
                      ||++|||++|+++|
T Consensus       241 dP~~RPt~~eil~~  254 (258)
T d1k2pa_         241 KADERPTFKILLSN  254 (258)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             CHhHCcCHHHHHHH
Confidence            99999999999987

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-54  Score=397.87  Aligned_cols=248  Identities=23%  Similarity=0.328  Sum_probs=197.4

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCe
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNH  167 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~  167 (433)
                      .++|++.+.||+|+||+||+|+..   ..||||+++..   ....+.+.+|+.++++++|+||     |++++++. ++.
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnI-----v~~~~~~~-~~~   77 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI-----LLFMGYST-APQ   77 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESS---SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTB-----CCEEEEEC-SSS
T ss_pred             cccEEEEEEEeeCCCcEEEEEEEC---CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCE-----eeeeEEEe-ccE
Confidence            357999999999999999999753   35999998642   3445778899999999998887     99999765 456


Q ss_pred             EEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCC
Q 013941          168 ICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSK  246 (433)
Q Consensus       168 ~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~  246 (433)
                      ++|||||| +|+|.+++.... ..+++..+..++.||+.||+|||++|||||||||+|||++.++               
T Consensus        78 ~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~---------------  141 (276)
T d1uwha_          78 LAIVTQWCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDL---------------  141 (276)
T ss_dssp             CEEEEECCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTS---------------
T ss_pred             EEEEEecCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCC---------------
Confidence            89999999 899999997654 3699999999999999999999999999999999999997665               


Q ss_pred             CCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCC---CCCccchHHHHHHHHHHHHhCCCCC
Q 013941          247 DGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGL---GWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       247 ~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~---~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                                  .+||+|||+|......     .....||+.|||||++.+.   .|+.++|||||||++|||+||+.||
T Consensus       142 ------------~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf  209 (276)
T d1uwha_         142 ------------TVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPY  209 (276)
T ss_dssp             ------------SEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ------------CEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCC
Confidence                        4677777776543321     2335799999999999753   4899999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.+....+..+.......|.                                            .......+++++.+|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~p~--------------------------------------------~~~~~~~~~~~l~~l  245 (276)
T d1uwha_         210 SNINNRDQIIFMVGRGYLSPD--------------------------------------------LSKVRSNCPKAMKRL  245 (276)
T ss_dssp             TTCCCHHHHHHHHHHTSCCCC--------------------------------------------GGGSCTTCCHHHHHH
T ss_pred             CCCChHHHHHHHHhcCCCCCc--------------------------------------------chhccccchHHHHHH
Confidence            887766554433322111110                                            011234567899999


Q ss_pred             HHHhcccCCCCCCCHHHHhcC
Q 013941          399 LQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~h  419 (433)
                      |.+||+.||++|||++||++|
T Consensus       246 i~~cl~~dp~~RPt~~~il~~  266 (276)
T d1uwha_         246 MAECLKKKRDERPLFPQILAS  266 (276)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHcCCCHhHCcCHHHHHHH
Confidence            999999999999999999986

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-54  Score=400.35  Aligned_cols=246  Identities=23%  Similarity=0.329  Sum_probs=195.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc---EEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE---LVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~---~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||+||+|+++.+++   .||||.+...  ....+.+.+|+.+|++++|+||     |++++++.+++
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnI-----v~l~g~~~~~~  100 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNV-----IHLEGVVTKST  100 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTB-----CCEEEEECSSS
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCC-----ccEEEEEeeCC
Confidence            579999999999999999999877664   5899988643  3445678899999999998887     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+++||||| +|+|.+++.... ..+++.++..++.||+.||+|||++|||||||||+|||++.++              
T Consensus       101 ~~~iv~Ey~~~g~L~~~~~~~~-~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~--------------  165 (299)
T d1jpaa_         101 PVMIITEFMENGSLDSFLRQND-GQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNL--------------  165 (299)
T ss_dssp             SCEEEEECCTTEEHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC--------------
T ss_pred             EEEEEEEecCCCcceeeecccc-CCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCC--------------
Confidence            999999999 999999887654 4699999999999999999999999999999999999997665              


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCCC--------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEA  316 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~  316 (433)
                                   .+||+|||+|+......        ....||+.|||||++.+..++.++|||||||++|||+| |..
T Consensus       166 -------------~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~  232 (299)
T d1jpaa_         166 -------------VCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGER  232 (299)
T ss_dssp             -------------CEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred             -------------cEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCC
Confidence                         45666666665432211        11357899999999999999999999999999999998 899


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+.+..+....+.+....                                                 .....++.++.
T Consensus       233 Pf~~~~~~~~~~~i~~~~~~-------------------------------------------------~~~~~~~~~l~  263 (299)
T d1jpaa_         233 PYWDMTNQDVINAIEQDYRL-------------------------------------------------PPPMDCPSALH  263 (299)
T ss_dssp             TTTTCCHHHHHHHHHTTCCC-------------------------------------------------CCCTTCCHHHH
T ss_pred             CCCCCCHHHHHHHHHcCCCC-------------------------------------------------CCCccchHHHH
Confidence            99988777665554332110                                                 01134567899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcC
Q 013941          397 DLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      +||.+||+.||++|||+.||+++
T Consensus       264 ~li~~cl~~~P~~RPs~~ei~~~  286 (299)
T d1jpaa_         264 QLMLDCWQKDRNHRPKFGQIVNT  286 (299)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             HHHHHHcCCCHhHCcCHHHHHHH
Confidence            99999999999999999998764

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=5.9e-54  Score=405.69  Aligned_cols=282  Identities=25%  Similarity=0.505  Sum_probs=210.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHH-hCCCCCcceeEecceecc--CCeE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLA-RHDIGGTRCVQIRNWFDY--RNHI  168 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~-~~~i~~~~~v~~~~~~~~--~~~~  168 (433)
                      ++|+++++||+|+||+||+|++..+|+.||||+++...  .+.+.+|+.+|+.+. |+||     ++++++|..  ...+
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~Ei~il~~l~~hpnI-----v~~~~~~~~~~~~~~  107 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK--KKKIKREIKILENLRGGPNI-----ITLADIVKDPVSRTP  107 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC--HHHHHHHHHHHHHHTTSTTB-----CCEEEEEECTTTCSE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH--HHHHHHHHHHHHhccCCCCC-----cEEEEEEEecCCCce
Confidence            57999999999999999999999999999999987543  456889999999996 6666     999999874  4679


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||| +++|..+.     +.+++..++.++.||+.||+|||++|||||||||+||||+.++                
T Consensus       108 ~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~----------------  166 (328)
T d3bqca1         108 ALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEH----------------  166 (328)
T ss_dssp             EEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTT----------------
T ss_pred             eEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCC----------------
Confidence            9999999 88886653     3699999999999999999999999999999999999997543                


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccC--CCcccccCCcccchhhhhCC-CCCccchHHHHHHHHHHHHhCCCCCCCCC-h
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQ--DHSYVVSTRHYRAPEVILGL-GWNYPCDLWSVGCILVELCSGEALFQTHE-N  323 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwSlG~il~el~~g~~pf~~~~-~  323 (433)
                                ..+||+|||+|.....  .....+||+.|+|||.+.+. .++.++|||||||++|+|++|..||.... .
T Consensus       167 ----------~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~  236 (328)
T d3bqca1         167 ----------RKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDN  236 (328)
T ss_dssp             ----------TEEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSH
T ss_pred             ----------CeeeecccccceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchh
Confidence                      2467788887765443  23446899999999998876 47999999999999999999999997544 4


Q ss_pred             HHHHHHHHHHhcCCChhhHHh-hhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHh
Q 013941          324 LEHLAMMERVLGPLPHHMVIR-ADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGL  402 (433)
Q Consensus       324 ~~~~~~i~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~  402 (433)
                      .++...+...++......... ........+..      .........    +    ...........+++++++||.+|
T Consensus       237 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~----~----~~~~~~~~~~~~s~~~~dli~~m  302 (328)
T d3bqca1         237 YDQLVRIAKVLGTEDLYDYIDKYNIELDPRFND------ILGRHSRKR----W----ERFVHSENQHLVSPEALDFLDKL  302 (328)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGG------TCCCCCCCC----G----GGGCCTTTGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCchhhhhhhhcccccCcccch------hcccccccc----h----hhcccccccccCCHHHHHHHHHH
Confidence            555666666555322111100 00000000000      000000000    0    00001112234578899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCCCC
Q 013941          403 LRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       403 L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                      |++||++||||+|+|+||||++-
T Consensus       303 L~~dP~~R~ta~e~L~Hp~F~~v  325 (328)
T d3bqca1         303 LRYDHQSRLTAREAMEHPYFYTV  325 (328)
T ss_dssp             SCSSGGGSCCHHHHHTSGGGTTS
T ss_pred             ccCChhHCcCHHHHhcCcccCCC
Confidence            99999999999999999999974

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-54  Score=405.15  Aligned_cols=248  Identities=19%  Similarity=0.286  Sum_probs=200.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc-----EEEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE-----LVAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~-----~vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ++|++.+.||+|+||+||+|++..+++     .||+|++...  ......+.+|+.++.++ +|+||     |++++++.
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnI-----v~l~~~~~  111 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENI-----VNLLGACT  111 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTB-----CCEEEEEC
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcE-----eEEEEEEe
Confidence            579999999999999999999876543     6999998643  33456788999999999 67777     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcCC---------------------CCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCC
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNSY---------------------RSFPIDLVRELGRQLLESVAFMHELRLIHTDLK  221 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~~---------------------~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDik  221 (433)
                      +.+.+|+||||| +|+|.+++.....                     ..+++..++.++.||+.||+|||++||||||||
T Consensus       112 ~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlK  191 (325)
T d1rjba_         112 LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLA  191 (325)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCS
T ss_pred             eCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCc
Confidence            999999999999 9999999976431                     258899999999999999999999999999999


Q ss_pred             CCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCC
Q 013941          222 PENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWN  296 (433)
Q Consensus       222 p~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~  296 (433)
                      |+|||++.++.                           +||+|||+|+......     ....||+.|||||++.+..++
T Consensus       192 p~Nill~~~~~---------------------------~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~  244 (325)
T d1rjba_         192 ARNVLVTHGKV---------------------------VKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYT  244 (325)
T ss_dssp             GGGEEEETTTE---------------------------EEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCC
T ss_pred             hhccccccCCe---------------------------EEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCC
Confidence            99999987664                           5666666655433222     234689999999999999999


Q ss_pred             ccchHHHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHH
Q 013941          297 YPCDLWSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVW  375 (433)
Q Consensus       297 ~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (433)
                      .++|||||||++|||+| |..||.+.+....+..+...-..                      .                
T Consensus       245 ~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~----------------------~----------------  286 (325)
T d1rjba_         245 IKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFK----------------------M----------------  286 (325)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCC----------------------C----------------
T ss_pred             cceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCC----------------------C----------------
Confidence            99999999999999998 89999886655444433321110                      0                


Q ss_pred             HhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          376 KLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                                ..+..+++++.+||.+||+.||++|||++||++|
T Consensus       287 ----------~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  320 (325)
T d1rjba_         287 ----------DQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF  320 (325)
T ss_dssp             ----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                      1123457789999999999999999999999976

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-52  Score=401.72  Aligned_cols=316  Identities=29%  Similarity=0.482  Sum_probs=242.0

Q ss_pred             ceeeecCCccC-CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCC------CCc
Q 013941           81 HYVFAIGENLT-PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDI------GGT  153 (433)
Q Consensus        81 ~~~~~~~~~~~-~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i------~~~  153 (433)
                      +|++.+|+.+. +||+++++||+|+||+||+|++..+|+.||||++++.....+...+|+.+++.+.|+++      .++
T Consensus         1 ~~p~~~g~~~~~~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~   80 (362)
T d1q8ya_           1 YHPAFKGEPYKDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGAN   80 (362)
T ss_dssp             CCCCCTTCEETTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHT
T ss_pred             CCCCCCCCCccCCcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcC
Confidence            35677899886 57999999999999999999999999999999998877667788899999999999875      357


Q ss_pred             ceeEecceecc--CCeEEEEEccC--CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh-CCcEecCCCCCcEEEe
Q 013941          154 RCVQIRNWFDY--RNHICIVFEKL--GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE-LRLIHTDLKPENILLV  228 (433)
Q Consensus       154 ~~v~~~~~~~~--~~~~~lv~e~~--~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~-~~ivHrDikp~NIli~  228 (433)
                      |++++++++..  ....+++|+++  +++............+++..++.++.||+.||+|||+ +||+||||||+|||++
T Consensus        81 ~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~  160 (362)
T d1q8ya_          81 HILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLME  160 (362)
T ss_dssp             TBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEE
T ss_pred             ceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeee
Confidence            88999988865  34566666665  5555555555555689999999999999999999998 8999999999999998


Q ss_pred             eCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHH
Q 013941          229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCIL  308 (433)
Q Consensus       229 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il  308 (433)
                      .++..                     .....++++|||.+..........+||+.|+|||++.+..++.++||||+||++
T Consensus       161 ~~~~~---------------------~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il  219 (362)
T d1q8ya_         161 IVDSP---------------------ENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLI  219 (362)
T ss_dssp             EEETT---------------------TTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHH
T ss_pred             ccCcc---------------------cccceeeEeecccccccccccccccccccccChhhccccCCCccccccchHHHH
Confidence            76521                     122358999999998777777778999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCC------hHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchh
Q 013941          309 VELCSGEALFQTHE------NLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN  382 (433)
Q Consensus       309 ~el~~g~~pf~~~~------~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (433)
                      ++|++|+.||....      ..+.+..+...+|.+|..+..........+........+....... .......      
T Consensus       220 ~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------  292 (362)
T d1q8ya_         220 FELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWP-LEDVLTE------  292 (362)
T ss_dssp             HHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCC-HHHHHHH------
T ss_pred             HHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCc-hhhhccc------
Confidence            99999999997543      3455677778889988877655443333322222222222211111 1111110      


Q ss_pred             hhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcCCCCCCC
Q 013941          383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRD  425 (433)
Q Consensus       383 ~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~hp~f~~~  425 (433)
                       ........++++.+||.+||++||++||||+|+|+||||++.
T Consensus       293 -~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~  334 (362)
T d1q8ya_         293 -KYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDT  334 (362)
T ss_dssp             -TTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTC
T ss_pred             -ccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCC
Confidence             111223447789999999999999999999999999999954

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-54  Score=395.26  Aligned_cols=249  Identities=25%  Similarity=0.358  Sum_probs=201.3

Q ss_pred             CCeEEec-cccccccEEEEEEEecC--CCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILS-KMGEGTFGQVVECFDNE--KKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~-~lg~G~~g~V~~~~~~~--~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|.+.+ +||+|+||+||+|.++.  ++..||||+++..  ....+.+.+|+.++++++|+||     |++++++.+ +
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~l~g~~~~-~   81 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYI-----VRLIGVCQA-E   81 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEES-S
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCE-----eeEeeeecc-C
Confidence            4688888 49999999999998754  4557999999743  3445678899999999998887     999999875 4


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+||||||| +|+|.+++.... ..+++..+..++.||+.||+|||++|||||||||+|||++.++.             
T Consensus        82 ~~~lvmE~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~-------------  147 (285)
T d1u59a_          82 ALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHY-------------  147 (285)
T ss_dssp             SEEEEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTE-------------
T ss_pred             eEEEEEEeCCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCc-------------
Confidence            689999999 899999986543 46999999999999999999999999999999999999988775             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                    +||+|||+|+.....      .....||+.|+|||++.+..++.++|||||||++|||+| |..||
T Consensus       148 --------------~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf  213 (285)
T d1u59a_         148 --------------AKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPY  213 (285)
T ss_dssp             --------------EEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             --------------eeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCC
Confidence                          455555555433221      123468999999999999899999999999999999998 99999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.+..+....+.+..                       +.                          ..+..+++++.+|
T Consensus       214 ~~~~~~~~~~~i~~~~-----------------------~~--------------------------~~p~~~~~~l~~l  244 (285)
T d1u59a_         214 KKMKGPEVMAFIEQGK-----------------------RM--------------------------ECPPECPPELYAL  244 (285)
T ss_dssp             TTCCTHHHHHHHHTTC-----------------------CC--------------------------CCCTTCCHHHHHH
T ss_pred             CCCCHHHHHHHHHcCC-----------------------CC--------------------------CCCCcCCHHHHHH
Confidence            9877766555443211                       00                          1123457799999


Q ss_pred             HHHhcccCCCCCCCHHHH---hcCCCCC
Q 013941          399 LQGLLRYDPAERLKAREA---LRHPFFT  423 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~el---l~hp~f~  423 (433)
                      |.+||+.||++|||+.+|   |+|+|++
T Consensus       245 i~~cl~~~p~~RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         245 MSDCWIYKWEDRPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             HHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence            999999999999999887   6788874

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-54  Score=395.22  Aligned_cols=242  Identities=25%  Similarity=0.387  Sum_probs=194.1

Q ss_pred             ccccccccEEEEEEEec--CCCcEEEEEEeccc---hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEE
Q 013941           98 SKMGEGTFGQVVECFDN--EKKELVAIKIVRSI---NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVF  172 (433)
Q Consensus        98 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~---~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~  172 (433)
                      ++||+|+||+||+|.+.  .+++.||||+++..   ....+.+.+|+.++++++|+||     |+++++++. +..+|||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnI-----v~~~g~~~~-~~~~lvm   86 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI-----VRMIGICEA-ESWMLVM   86 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTB-----CCEEEEEES-SSEEEEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCC-----ceEEEEecc-CCEEEEE
Confidence            47999999999999854  45678999998643   2345678899999999998887     999999865 4578999


Q ss_pred             ccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCcc
Q 013941          173 EKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSYF  251 (433)
Q Consensus       173 e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~~  251 (433)
                      ||| +|+|.+++....  .+++..+..++.||+.||+|||++|||||||||+|||++.++.+                  
T Consensus        87 E~~~~g~L~~~l~~~~--~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~------------------  146 (277)
T d1xbba_          87 EMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYA------------------  146 (277)
T ss_dssp             ECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEE------------------
T ss_pred             EcCCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcc------------------
Confidence            999 999999998765  79999999999999999999999999999999999999887754                  


Q ss_pred             cCCCCCCCeeeecCCCCccccCC------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChH
Q 013941          252 KNLPKSSAIKLIDFGSTTFEHQD------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENL  324 (433)
Q Consensus       252 ~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~  324 (433)
                               ||+|||+|+.....      .....||+.|||||++.+..++.++|||||||++|||++ |+.||.+.+..
T Consensus       147 ---------kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~  217 (277)
T d1xbba_         147 ---------KISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS  217 (277)
T ss_dssp             ---------EECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH
T ss_pred             ---------cccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHH
Confidence                     55555555432221      122478999999999999999999999999999999998 89999987776


Q ss_pred             HHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcc
Q 013941          325 EHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLR  404 (433)
Q Consensus       325 ~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~  404 (433)
                      +....+.+..                       +..                          .+..++.++.+||.+||+
T Consensus       218 ~~~~~i~~~~-----------------------~~~--------------------------~p~~~~~~~~~li~~cl~  248 (277)
T d1xbba_         218 EVTAMLEKGE-----------------------RMG--------------------------CPAGCPREMYDLMNLCWT  248 (277)
T ss_dssp             HHHHHHHTTC-----------------------CCC--------------------------CCTTCCHHHHHHHHHHTC
T ss_pred             HHHHHHHcCC-----------------------CCC--------------------------CCcccCHHHHHHHHHHcC
Confidence            6555443211                       011                          123457789999999999


Q ss_pred             cCCCCCCCHHHH---hcCCCCC
Q 013941          405 YDPAERLKAREA---LRHPFFT  423 (433)
Q Consensus       405 ~dP~~R~ta~el---l~hp~f~  423 (433)
                      .||++|||+++|   |+|+|+.
T Consensus       249 ~dp~~RPs~~~i~~~L~~~~~~  270 (277)
T d1xbba_         249 YDVENRPGFAAVELRLRNYYYD  270 (277)
T ss_dssp             SSTTTSCCHHHHHHHHHHHHHH
T ss_pred             CCHhHCcCHHHHHHHhhCHHhh
Confidence            999999999998   4666653

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-53  Score=393.64  Aligned_cols=251  Identities=26%  Similarity=0.357  Sum_probs=203.4

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIV  171 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv  171 (433)
                      ++|++.+.||+|+||+||+|++..+ +.||||+++......+.+.+|+.++++++|+||     |++++++.+ +.+++|
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~-~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nI-----v~~~g~~~~-~~~~lv   89 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKL-----VQLYAVVSE-EPIYIV   89 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTT-EEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTB-----CCEEEEECS-SSCEEE
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCC-CEEEEEEECcccCCHHHHHHHHHHHHhcccCCE-----eEEEEEEec-CCeEEE
Confidence            5799999999999999999998655 569999998776667889999999999999888     999999865 557899


Q ss_pred             EccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCCc
Q 013941          172 FEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGSY  250 (433)
Q Consensus       172 ~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~~  250 (433)
                      |||| +|+|..++.......+++..+..++.||+.||+|||++||+||||||+||||+.++                   
T Consensus        90 ~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~-------------------  150 (285)
T d1fmka3          90 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENL-------------------  150 (285)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGG-------------------
T ss_pred             EEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCC-------------------
Confidence            9999 99999998754444699999999999999999999999999999999999997665                   


Q ss_pred             ccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhC-CCCCCCCChHH
Q 013941          251 FKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSG-EALFQTHENLE  325 (433)
Q Consensus       251 ~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g-~~pf~~~~~~~  325 (433)
                              .+||+|||+|+.....    .....||+.|+|||++.+..++.++|||||||++|||++| .+|+.+....+
T Consensus       151 --------~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~  222 (285)
T d1fmka3         151 --------VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE  222 (285)
T ss_dssp             --------CEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH
T ss_pred             --------cEEEcccchhhhccCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHH
Confidence                    4677777776543222    1235789999999999999999999999999999999995 55556555555


Q ss_pred             HHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhccc
Q 013941          326 HLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRY  405 (433)
Q Consensus       326 ~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~  405 (433)
                      .+..+.+...                                                 ......++.++.+||.+||+.
T Consensus       223 ~~~~i~~~~~-------------------------------------------------~~~~~~~~~~l~~li~~cl~~  253 (285)
T d1fmka3         223 VLDQVERGYR-------------------------------------------------MPCPPECPESLHDLMCQCWRK  253 (285)
T ss_dssp             HHHHHHTTCC-------------------------------------------------CCCCTTSCHHHHHHHHHHTCS
T ss_pred             HHHHHHhcCC-------------------------------------------------CCCCcccCHHHHHHHHHHccc
Confidence            5554432210                                                 011234577899999999999


Q ss_pred             CCCCCCCHHHHhc--CCCCCCC
Q 013941          406 DPAERLKAREALR--HPFFTRD  425 (433)
Q Consensus       406 dP~~R~ta~ell~--hp~f~~~  425 (433)
                      ||++|||+++|++  |+||++.
T Consensus       254 dP~~Rps~~~i~~~L~~~~~~~  275 (285)
T d1fmka3         254 EPEERPTFEYLQAFLEDYFTST  275 (285)
T ss_dssp             SGGGSCCHHHHHHHHHTTTSCS
T ss_pred             CHhHCcCHHHHHHHHhhhhcCC
Confidence            9999999999998  8999864

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-53  Score=399.37  Aligned_cols=253  Identities=26%  Similarity=0.411  Sum_probs=206.2

Q ss_pred             CCeEEeccccccccEEEEEEEe---cCCCcEEEEEEeccc-----hhhHHHHHHHHHHHHHHHhC-CCCCcceeEeccee
Q 013941           92 PRYRILSKMGEGTFGQVVECFD---NEKKELVAIKIVRSI-----NKYREAAMIEIDVLQRLARH-DIGGTRCVQIRNWF  162 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~---~~~~~~vavK~~~~~-----~~~~~~~~~E~~~l~~l~~~-~i~~~~~v~~~~~~  162 (433)
                      ++|++++.||+|+||+||+|++   ..+|+.||||++++.     ....+.+.+|+.++++++|+ ||     +++++++
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnI-----v~~~~~~   98 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFL-----VTLHYAF   98 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTB-----CCEEEEE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeE-----EEeeeee
Confidence            5699999999999999999987   447899999998642     23345677899999999984 55     9999999


Q ss_pred             ccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccc
Q 013941          163 DYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFL  241 (433)
Q Consensus       163 ~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~  241 (433)
                      ++.+.+++||||+ +++|.+++....  .+++..++.++.||+.||+|||++|||||||||+|||++.+|          
T Consensus        99 ~~~~~~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~----------  166 (322)
T d1vzoa_          99 QTETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNG----------  166 (322)
T ss_dssp             EETTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTS----------
T ss_pred             ccCCceeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCC----------
Confidence            9999999999999 999999998775  689999999999999999999999999999999999997655          


Q ss_pred             ccCCCCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCC--CCCccchHHHHHHHHHHHHhCC
Q 013941          242 SRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGL--GWNYPCDLWSVGCILVELCSGE  315 (433)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~--~~~~~~DiwSlG~il~el~~g~  315 (433)
                                       .+||+|||++......    .....||+.|+|||.+.+.  .++.++|||||||+||+|++|.
T Consensus       167 -----------------~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~  229 (322)
T d1vzoa_         167 -----------------HVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGA  229 (322)
T ss_dssp             -----------------CEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------CEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCC
Confidence                             4677777776543222    2335799999999999865  4678999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          316 ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       316 ~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .||.+.+..+....+.+.....                                              .......+++++
T Consensus       230 ~PF~~~~~~~~~~~i~~~~~~~----------------------------------------------~~~~~~~~s~~~  263 (322)
T d1vzoa_         230 SPFTVDGEKNSQAEISRRILKS----------------------------------------------EPPYPQEMSALA  263 (322)
T ss_dssp             CTTSCTTSCCCHHHHHHHHHHC----------------------------------------------CCCCCTTSCHHH
T ss_pred             CCCCCCCHHHHHHHHHHhcccC----------------------------------------------CCCCcccCCHHH
Confidence            9998766544444333221000                                              001123467899


Q ss_pred             HHHHHHhcccCCCCCC-----CHHHHhcCCCCCC
Q 013941          396 IDLLQGLLRYDPAERL-----KAREALRHPFFTR  424 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~-----ta~ell~hp~f~~  424 (433)
                      .+||.+||+.||++|+     ||+|+++||||++
T Consensus       264 ~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~  297 (322)
T d1vzoa_         264 KDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQK  297 (322)
T ss_dssp             HHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTT
T ss_pred             HHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcC
Confidence            9999999999999999     5999999999987

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-51  Score=381.17  Aligned_cols=245  Identities=21%  Similarity=0.307  Sum_probs=192.5

Q ss_pred             CCeEEeccccccccEEEEEEEecCCC----cEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKK----ELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ..|++.+.||+|+||+||+|.++.++    ..||||+++..  ......+.+|+.++.+++|+||     |++++++.+.
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nI-----v~~~g~~~~~   81 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNI-----IRLEGVISKY   81 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEECSS
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCE-----eeeeEEEecC
Confidence            46999999999999999999977654    47999998643  3344568899999999998887     9999999999


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      +..++||||| +++|.+++.... ..+++..+..++.||+.||+|||+++|+||||||+|||++.++             
T Consensus        82 ~~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~-------------  147 (283)
T d1mqba_          82 KPMMIITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNL-------------  147 (283)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTC-------------
T ss_pred             CceEEEEEecccCcchhhhhccc-ccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCC-------------
Confidence            9999999999 888988877654 4799999999999999999999999999999999999997655             


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCC-C
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEA-L  317 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~-p  317 (433)
                                    .+||+|||+|+......      ....||+.|||||++.+..++.++|||||||++|||++|.. |
T Consensus       148 --------------~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~  213 (283)
T d1mqba_         148 --------------VCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERP  213 (283)
T ss_dssp             --------------CEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             --------------eEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCc
Confidence                          46777777765433211      12468999999999999999999999999999999999654 4


Q ss_pred             CCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHH
Q 013941          318 FQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLID  397 (433)
Q Consensus       318 f~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  397 (433)
                      |...+..+.+..+....                       +.                          .....++..+.+
T Consensus       214 ~~~~~~~~~~~~i~~~~-----------------------~~--------------------------~~~~~~~~~l~~  244 (283)
T d1mqba_         214 YWELSNHEVMKAINDGF-----------------------RL--------------------------PTPMDCPSAIYQ  244 (283)
T ss_dssp             TTTCCHHHHHHHHHTTC-----------------------CC--------------------------CCCTTCBHHHHH
T ss_pred             cccCCHHHHHHHHhccC-----------------------CC--------------------------CCchhhHHHHHH
Confidence            55544444433332211                       00                          112345678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhc
Q 013941          398 LLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       398 li~~~L~~dP~~R~ta~ell~  418 (433)
                      ||.+||+.||++|||+.||++
T Consensus       245 li~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         245 LMMQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHH
T ss_pred             HHHHHCcCCHhHCcCHHHHHH
Confidence            999999999999999999976

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-52  Score=384.28  Aligned_cols=245  Identities=24%  Similarity=0.326  Sum_probs=194.9

Q ss_pred             CCeEEeccccccccEEEEEEEecCC---CcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEK---KELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||.||+|++..+   +..||||+++..  ....+.+.+|+.++++++|+||     +++++++. .+
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnI-----v~l~~~~~-~~   80 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHI-----VKLIGVIT-EN   80 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEEC-SS
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEe-cC
Confidence            5799999999999999999998654   356899988643  3445678899999999988887     99999986 46


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSS  245 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~  245 (433)
                      .+|+||||| +|+|.+++.... ..+++..++.++.||+.||+|||++|||||||||+||+++.++.             
T Consensus        81 ~~~iv~E~~~~g~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~-------------  146 (273)
T d1mp8a_          81 PVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDC-------------  146 (273)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTE-------------
T ss_pred             eEEEEEEeccCCcHHhhhhccC-CCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCc-------------
Confidence            789999999 899999877654 47999999999999999999999999999999999999987764             


Q ss_pred             CCCCcccCCCCCCCeeeecCCCCccccCC----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCC
Q 013941          246 KDGSYFKNLPKSSAIKLIDFGSTTFEHQD----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQT  320 (433)
Q Consensus       246 ~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~  320 (433)
                                    +||+|||+|+.....    .....||+.|+|||++.+..++.++|||||||++|||++ |.+||.+
T Consensus       147 --------------~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~  212 (273)
T d1mp8a_         147 --------------VKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQG  212 (273)
T ss_dssp             --------------EEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             --------------EEEccchhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCC
Confidence                          566666666543221    223478999999999999999999999999999999998 8999988


Q ss_pred             CChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHH
Q 013941          321 HENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQ  400 (433)
Q Consensus       321 ~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~  400 (433)
                      .+..+....+.+...                       .                          ..+..+++++.+||.
T Consensus       213 ~~~~~~~~~i~~~~~-----------------------~--------------------------~~~~~~~~~~~~li~  243 (273)
T d1mp8a_         213 VKNNDVIGRIENGER-----------------------L--------------------------PMPPNCPPTLYSLMT  243 (273)
T ss_dssp             CCGGGHHHHHHTTCC-----------------------C--------------------------CCCTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-----------------------C--------------------------CCCCCCCHHHHHHHH
Confidence            777665554432110                       0                          112345779999999


Q ss_pred             HhcccCCCCCCCHHHHhcC
Q 013941          401 GLLRYDPAERLKAREALRH  419 (433)
Q Consensus       401 ~~L~~dP~~R~ta~ell~h  419 (433)
                      +||+.||++|||++||++|
T Consensus       244 ~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         244 KCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             HHTCSSGGGSCCHHHHHHH
T ss_pred             HHcCCCHhHCcCHHHHHHH
Confidence            9999999999999999976

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-52  Score=382.68  Aligned_cols=244  Identities=21%  Similarity=0.322  Sum_probs=194.2

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec-cCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD-YRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~-~~~~~~l  170 (433)
                      ++|++++.||+|+||.||+|++  +|..||||+++.. ...+.+.+|++++++++|+||     +++++++. ..+.+|+
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~~-~~~~~~~~E~~~l~~l~HpnI-----v~~~g~~~~~~~~~~l   78 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKND-ATAQAFLAEASVMTQLRHSNL-----VQLLGVIVEEKGGLYI   78 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCC-C--HHHHHTHHHHTTCCCTTB-----CCEEEEECCC--CCEE
T ss_pred             HHeEEeEEEecCCCeEEEEEEE--CCeEEEEEEECcH-HHHHHHHHHHHHHHhCCCCCE-----eeEEEEEEecCCcEEE
Confidence            4699999999999999999987  4778999999754 345678899999999988877     99999875 4567899


Q ss_pred             EEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          171 VFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       171 v~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      ||||+ +|+|.+++.......+++..++.++.||+.||+|||+++|+||||||+|||++.++                  
T Consensus        79 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~------------------  140 (262)
T d1byga_          79 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDN------------------  140 (262)
T ss_dssp             EECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTS------------------
T ss_pred             EEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCC------------------
Confidence            99999 99999999765434589999999999999999999999999999999999997655                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCCCCCChHHHHH
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALFQTHENLEHLA  328 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf~~~~~~~~~~  328 (433)
                               .+||+|||+++..........+|..|+|||++.+..++.++|||||||++|||+| |++||...+..+...
T Consensus       141 ---------~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~  211 (262)
T d1byga_         141 ---------VAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVP  211 (262)
T ss_dssp             ---------CEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHH
T ss_pred             ---------CEeecccccceecCCCCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHH
Confidence                     5788888888776666666688999999999999999999999999999999998 788898776655544


Q ss_pred             HHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccCCC
Q 013941          329 MMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPA  408 (433)
Q Consensus       329 ~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~  408 (433)
                      .+.+.                       .+.                          ..+...++++.+||.+||+.||+
T Consensus       212 ~i~~~-----------------------~~~--------------------------~~~~~~~~~~~~li~~cl~~dP~  242 (262)
T d1byga_         212 RVEKG-----------------------YKM--------------------------DAPDGCPPAVYEVMKNCWHLDAA  242 (262)
T ss_dssp             HHTTT-----------------------CCC--------------------------CCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             HHHcC-----------------------CCC--------------------------CCCccCCHHHHHHHHHHcccCHh
Confidence            43221                       000                          11234567999999999999999


Q ss_pred             CCCCHHHHhcC
Q 013941          409 ERLKAREALRH  419 (433)
Q Consensus       409 ~R~ta~ell~h  419 (433)
                      +|||+.|++++
T Consensus       243 ~Rps~~~l~~~  253 (262)
T d1byga_         243 MRPSFLQLREQ  253 (262)
T ss_dssp             GSCCHHHHHHH
T ss_pred             HCcCHHHHHHH
Confidence            99999999864

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.3e-51  Score=384.42  Aligned_cols=263  Identities=24%  Similarity=0.308  Sum_probs=205.2

Q ss_pred             cCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           90 LTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        90 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      +.++|++.+.||+|+||+||+|++..+|+.||||++..... ...+.+|+++++.+.|+++    ++.+..++.+++..+
T Consensus         5 vg~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~-~~~~~~E~~i~~~l~~~~~----i~~~~~~~~~~~~~~   79 (299)
T d1ckia_           5 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-HPQLHIESKIYKMMQGGVG----IPTIRWCGAEGDYNV   79 (299)
T ss_dssp             ETTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT-SCCHHHHHHHHHHSTTSTT----CCCEEEEEEETTEEE
T ss_pred             ECCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc-CHHHHHHHHHHHHccCCCc----ccEEEEEEecCCEEE
Confidence            34689999999999999999999999999999999875432 3457789999999988764    355666777889999


Q ss_pred             EEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCCC
Q 013941          170 IVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDGS  249 (433)
Q Consensus       170 lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~~  249 (433)
                      +||||++++|.+.+.... ..+++..+..++.||+.||+|||++|||||||||+|||++..+                  
T Consensus        80 ivme~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~------------------  140 (299)
T d1ckia_          80 MVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGK------------------  140 (299)
T ss_dssp             EEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGG------------------
T ss_pred             EEEEEcCCchhhhhhhcc-CCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccC------------------
Confidence            999999889888876544 4799999999999999999999999999999999999986533                  


Q ss_pred             cccCCCCCCCeeeecCCCCccccCC----------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCC
Q 013941          250 YFKNLPKSSAIKLIDFGSTTFEHQD----------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQ  319 (433)
Q Consensus       250 ~~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~  319 (433)
                            .+..++|+|||+|......          .....||+.|||||++.+..++.++|||||||++|||++|..||.
T Consensus       141 ------~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~  214 (299)
T d1ckia_         141 ------KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQ  214 (299)
T ss_dssp             ------GTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ------CCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCccc
Confidence                  3446888888888754322          233589999999999999999999999999999999999999998


Q ss_pred             CCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHH
Q 013941          320 THENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLL  399 (433)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  399 (433)
                      ..........+......                                          ............+++++.+||
T Consensus       215 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~p~~~~~li  252 (299)
T d1ckia_         215 GLKAATKRQKYERISEK------------------------------------------KMSTPIEVLCKGYPSEFATYL  252 (299)
T ss_dssp             CCC-------HHHHHHH------------------------------------------HHHSCHHHHTTTSCHHHHHHH
T ss_pred             ccchHHHHHHHHHhhcc------------------------------------------cCCCChhHhccCCCHHHHHHH
Confidence            76654443332221100                                          000001112345678999999


Q ss_pred             HHhcccCCCCCCCHH---HHhcCCCCCC
Q 013941          400 QGLLRYDPAERLKAR---EALRHPFFTR  424 (433)
Q Consensus       400 ~~~L~~dP~~R~ta~---ell~hp~f~~  424 (433)
                      .+||+.||++||+++   ++|+|+|.++
T Consensus       253 ~~cl~~~p~~RP~~~~i~~~l~~~~~~~  280 (299)
T d1ckia_         253 NFCRSLRFDDKPDYSYLRQLFRNLFHRQ  280 (299)
T ss_dssp             HHHHHSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHccCChhHCcCHHHHHHHHHHHHHHc
Confidence            999999999999986   5577877654

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-51  Score=386.12  Aligned_cols=245  Identities=20%  Similarity=0.282  Sum_probs=193.8

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCc----EEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKE----LVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYR  165 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~----~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~  165 (433)
                      ..|++++.||+|+||+||+|++..+|+    .||+|.++..  ....+.+.+|+.++++++|+||     |++++++.++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnI-----v~l~g~~~~~   83 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV-----CRLLGICLTS   83 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTB-----CCEEEEEESS
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCE-----eeEEEEEecC
Confidence            359999999999999999999988876    5888887643  3445678999999999998887     9999999875


Q ss_pred             CeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccC
Q 013941          166 NHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRS  244 (433)
Q Consensus       166 ~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~  244 (433)
                      + .+++||++ +++|.+++.... ..+++..++.++.||+.||+|||++|||||||||+|||++.++.+           
T Consensus        84 ~-~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~-----------  150 (317)
T d1xkka_          84 T-VQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHV-----------  150 (317)
T ss_dssp             S-EEEEEECCTTCBHHHHHHHTS-SSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEE-----------
T ss_pred             C-eeEEEEeccCCcccccccccc-cCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCe-----------
Confidence            5 56667777 999999887654 479999999999999999999999999999999999999887755           


Q ss_pred             CCCCCcccCCCCCCCeeeecCCCCccccCC-----CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCCCC
Q 013941          245 SKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-----HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEALF  318 (433)
Q Consensus       245 ~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~pf  318 (433)
                                      ||+|||+|......     .....||+.|+|||++.+..++.++|||||||++|||+| |..||
T Consensus       151 ----------------kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~  214 (317)
T d1xkka_         151 ----------------KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPY  214 (317)
T ss_dssp             ----------------EECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             ----------------EeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCC
Confidence                            55555554432211     122468999999999999999999999999999999998 89999


Q ss_pred             CCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHH
Q 013941          319 QTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDL  398 (433)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  398 (433)
                      .+.+..+....+.+...                       .                          ..+..++.++.+|
T Consensus       215 ~~~~~~~~~~~i~~~~~-----------------------~--------------------------~~p~~~~~~~~~l  245 (317)
T d1xkka_         215 DGIPASEISSILEKGER-----------------------L--------------------------PQPPICTIDVYMI  245 (317)
T ss_dssp             TTSCGGGHHHHHHHTCC-----------------------C--------------------------CCCTTBCHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCC-----------------------C--------------------------CCCcccCHHHHHH
Confidence            88766555444433110                       0                          0123456789999


Q ss_pred             HHHhcccCCCCCCCHHHHhcC
Q 013941          399 LQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       399 i~~~L~~dP~~R~ta~ell~h  419 (433)
                      |.+||+.||++|||+.||++|
T Consensus       246 i~~cl~~dP~~RPs~~eil~~  266 (317)
T d1xkka_         246 MVKCWMIDADSRPKFRELIIE  266 (317)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHhCCCChhhCcCHHHHHHH
Confidence            999999999999999999987

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-51  Score=382.02  Aligned_cols=249  Identities=21%  Similarity=0.295  Sum_probs=189.2

Q ss_pred             CCeEEeccccccccEEEEEEEecC-----CCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE-----KKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ++|++.++||+|+||.||+|++..     +++.||||+++..  ....+.+.+|..++.++.|+    ++++.+++++..
T Consensus        13 ~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h----~~iv~~~~~~~~   88 (299)
T d1ywna1          13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH----LNVVNLLGACTK   88 (299)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCC----TTBCCEEEEECS
T ss_pred             HHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCC----CeEEEeeeeecc
Confidence            579999999999999999999754     4578999998743  23445677888888888654    334888887654


Q ss_pred             -CCeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEe
Q 013941          165 -RNHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLV  228 (433)
Q Consensus       165 -~~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~  228 (433)
                       ++.+++||||| +|+|.+++....              ...+++..+..++.||+.||+|||++|||||||||+|||++
T Consensus        89 ~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~  168 (299)
T d1ywna1          89 PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLS  168 (299)
T ss_dssp             TTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC
T ss_pred             CCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeEC
Confidence             56799999999 999999997542              13589999999999999999999999999999999999997


Q ss_pred             eCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCCCCCccchHHH
Q 013941          229 SAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGWNYPCDLWS  303 (433)
Q Consensus       229 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS  303 (433)
                      .++.                           +||+|||+|+....     ......||+.|+|||++.+..++.++||||
T Consensus       169 ~~~~---------------------------~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS  221 (299)
T d1ywna1         169 EKNV---------------------------VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWS  221 (299)
T ss_dssp             GGGC---------------------------EEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHH
T ss_pred             CCCc---------------------------EEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceee
Confidence            7664                           56666666543221     122357999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchh
Q 013941          304 VGCILVELCSG-EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPN  382 (433)
Q Consensus       304 lG~il~el~~g-~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (433)
                      |||++|||++| .+||.+......+..+......                                              
T Consensus       222 ~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~----------------------------------------------  255 (299)
T d1ywna1         222 FGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTR----------------------------------------------  255 (299)
T ss_dssp             HHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCC----------------------------------------------
T ss_pred             hHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCC----------------------------------------------
Confidence            99999999986 5688776544433322221000                                              


Q ss_pred             hhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          383 LIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       383 ~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                        ....+.+++++.+||.+||+.||++|||++||++|
T Consensus       256 --~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         256 --MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             --CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence              01123457789999999999999999999999987

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-51  Score=375.03  Aligned_cols=245  Identities=21%  Similarity=0.299  Sum_probs=191.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCC-C--cEEEEEEeccc----hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEK-K--ELVAIKIVRSI----NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~-~--~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ++|++++.||+|+||.||+|+...+ +  ..||||++++.    ....+.+.+|+.++++++|+||     +++++++.+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nI-----v~~~g~~~~   82 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNL-----IRLYGVVLT   82 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTB-----CCEEEEECS
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCE-----EEEEEEEee
Confidence            4699999999999999999986433 3  46899998643    2344678899999999998888     999999976


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCcccccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSR  243 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~  243 (433)
                       +..++||||| +++|.+++.... ..+++..++.++.||+.||+|||++||+||||||+|||++.++.           
T Consensus        83 -~~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~-----------  149 (273)
T d1u46a_          83 -PPMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDL-----------  149 (273)
T ss_dssp             -SSCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTE-----------
T ss_pred             -cchheeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccc-----------
Confidence             4678999999 999998887543 36999999999999999999999999999999999999987664           


Q ss_pred             CCCCCCcccCCCCCCCeeeecCCCCccccCCC------cccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHh-CCC
Q 013941          244 SSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH------SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCS-GEA  316 (433)
Q Consensus       244 ~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~-g~~  316 (433)
                                      +||+|||++.......      ....||..|+|||++.+..++.++|||||||++|||+| |..
T Consensus       150 ----------------vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~  213 (273)
T d1u46a_         150 ----------------VKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQE  213 (273)
T ss_dssp             ----------------EEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ----------------eeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCC
Confidence                            5666666665432221      22467889999999999999999999999999999998 899


Q ss_pred             CCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHH
Q 013941          317 LFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLI  396 (433)
Q Consensus       317 pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  396 (433)
                      ||.+.+..+....+.+....+                                                .....++.++.
T Consensus       214 Pf~~~~~~~~~~~i~~~~~~~------------------------------------------------~~~~~~~~~l~  245 (273)
T d1u46a_         214 PWIGLNGSQILHKIDKEGERL------------------------------------------------PRPEDCPQDIY  245 (273)
T ss_dssp             TTTTCCHHHHHHHHHTSCCCC------------------------------------------------CCCTTCCHHHH
T ss_pred             CCCCcCHHHHHHHHHhCCCCC------------------------------------------------CCcccccHHHH
Confidence            999888777666554321110                                                11234577899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhc
Q 013941          397 DLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       397 ~li~~~L~~dP~~R~ta~ell~  418 (433)
                      +||.+||+.||++|||+.||++
T Consensus       246 ~li~~cl~~dp~~RPt~~ei~~  267 (273)
T d1u46a_         246 NVMVQCWAHKPEDRPTFVALRD  267 (273)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHcCCChhHCcCHHHHHH
Confidence            9999999999999999999863

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-50  Score=375.94  Aligned_cols=246  Identities=19%  Similarity=0.312  Sum_probs=196.3

Q ss_pred             CCeEEeccccccccEEEEEEEecCCC-------cEEEEEEeccch--hhHHHHHHHHHHHHHH-HhCCCCCcceeEecce
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKK-------ELVAIKIVRSIN--KYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNW  161 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~-------~~vavK~~~~~~--~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~  161 (433)
                      ++|++.+.||+|+||.||+|++..++       ..||||+++...  .....+.+|+..+.++ +|+||     |+++++
T Consensus        13 ~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnI-----v~~~~~   87 (299)
T d1fgka_          13 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNI-----INLLGA   87 (299)
T ss_dssp             GGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTB-----CCEEEE
T ss_pred             HHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeE-----Eecccc
Confidence            57999999999999999999876554       479999996533  3456778899999888 57766     999999


Q ss_pred             eccCCeEEEEEccC-CCCHHHHHHhcC--------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEE
Q 013941          162 FDYRNHICIVFEKL-GPSLYDFLRKNS--------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENIL  226 (433)
Q Consensus       162 ~~~~~~~~lv~e~~-~~~L~~~l~~~~--------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIl  226 (433)
                      +.+++.+++||||| +|+|.+++....              ...+++.++..++.||+.||+|||++|||||||||+|||
T Consensus        88 ~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiL  167 (299)
T d1fgka_          88 CTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL  167 (299)
T ss_dssp             ECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             cccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeeccccee
Confidence            99999999999999 999999997553              235899999999999999999999999999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchH
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDL  301 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di  301 (433)
                      ++.++                           .+||+|||++.......     ....||+.|+|||++.+..|+.++||
T Consensus       168 l~~~~---------------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~Di  220 (299)
T d1fgka_         168 VTEDN---------------------------VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDV  220 (299)
T ss_dssp             ECTTC---------------------------CEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHH
T ss_pred             ecCCC---------------------------CeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhh
Confidence            97665                           46667777665433221     22578999999999999999999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCc
Q 013941          302 WSVGCILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRL  380 (433)
Q Consensus       302 wSlG~il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (433)
                      |||||++|||++ |.+||.+.+.......+....                       ..                     
T Consensus       221 wS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~-----------------------~~---------------------  256 (299)
T d1fgka_         221 WSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGH-----------------------RM---------------------  256 (299)
T ss_dssp             HHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC-----------------------CC---------------------
T ss_pred             HHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcCC-----------------------CC---------------------
Confidence            999999999998 799998877665544433211                       00                     


Q ss_pred             hhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          381 PNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       381 ~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                           ..+..+++++.+||.+||+.||++|||+.||++
T Consensus       257 -----~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~  289 (299)
T d1fgka_         257 -----DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE  289 (299)
T ss_dssp             -----CCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----CCCccchHHHHHHHHHHccCCHhHCcCHHHHHH
Confidence                 112345778999999999999999999999986

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-50  Score=378.15  Aligned_cols=247  Identities=20%  Similarity=0.293  Sum_probs=201.7

Q ss_pred             CCCeEEeccccccccEEEEEEEec-----CCCcEEEEEEeccc--hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceec
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDN-----EKKELVAIKIVRSI--NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~  163 (433)
                      .++|++++.||+|+||+||+|+.+     .+++.||||+++..  ....+.+.+|+.++++++|+|+     +++++++.
T Consensus        12 ~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~ni-----v~~~~~~~   86 (301)
T d1lufa_          12 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNI-----VKLLGVCA   86 (301)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTB-----CCEEEEEC
T ss_pred             HHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCc-----ccceeeec
Confidence            357999999999999999999865     35678999998743  2345678899999999998887     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcC----------------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCC
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNS----------------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDL  220 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~----------------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDi  220 (433)
                      ..+..++||||+ +|+|.+++....                      ...+++..+..++.||+.||+|||++|||||||
T Consensus        87 ~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDl  166 (301)
T d1lufa_          87 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDL  166 (301)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEE
Confidence            999999999999 999999997532                      124889999999999999999999999999999


Q ss_pred             CCCcEEEeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccC-----CCcccccCCcccchhhhhCCCC
Q 013941          221 KPENILLVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQ-----DHSYVVSTRHYRAPEVILGLGW  295 (433)
Q Consensus       221 kp~NIli~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~  295 (433)
                      ||+|||++.++                           .+||+|||+|.....     ......||+.|+|||++.+..|
T Consensus       167 Kp~NILld~~~---------------------------~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  219 (301)
T d1lufa_         167 ATRNCLVGENM---------------------------VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRY  219 (301)
T ss_dssp             SGGGEEECGGG---------------------------CEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCC
T ss_pred             cccceEECCCC---------------------------cEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCC
Confidence            99999997655                           467777777653322     1223578899999999999999


Q ss_pred             CccchHHHHHHHHHHHHhCC-CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHH
Q 013941          296 NYPCDLWSVGCILVELCSGE-ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAV  374 (433)
Q Consensus       296 ~~~~DiwSlG~il~el~~g~-~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (433)
                      +.++|||||||++|||++|. +||.+.+..+....+.+..  .+                                    
T Consensus       220 t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~--~~------------------------------------  261 (301)
T d1lufa_         220 TTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGN--IL------------------------------------  261 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTC--CC------------------------------------
T ss_pred             ChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCC--CC------------------------------------
Confidence            99999999999999999985 6888877776655443211  11                                    


Q ss_pred             HHhcCchhhhhhccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          375 WKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                                 ..+..+++++.+||.+||+.||++|||+.||++
T Consensus       262 -----------~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~  294 (301)
T d1lufa_         262 -----------ACPENCPLELYNLMRLCWSKLPADRPSFCSIHR  294 (301)
T ss_dssp             -----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----------CCCccchHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                       112345678999999999999999999999964

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=4.9e-50  Score=372.03  Aligned_cols=257  Identities=21%  Similarity=0.253  Sum_probs=204.8

Q ss_pred             ccCCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           89 NLTPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        89 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+.++|++.++||+|+||+||+|++..+|+.||||++.... ....+.+|+++++.+.|+    ++++.+++++..+...
T Consensus         2 vig~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~-~~~~~~~e~~~~~~l~~~----~~i~~~~~~~~~~~~~   76 (293)
T d1csna_           2 VVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS-DAPQLRDEYRTYKLLAGC----TGIPNVYYFGQEGLHN   76 (293)
T ss_dssp             EETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT-TSCCHHHHHHHHHHTTTC----TTCCCEEEEEEETTEE
T ss_pred             CCCCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc-CcHHHHHHHHHHHHhcCC----CCCCEEEEEeecCCcc
Confidence            35678999999999999999999999999999999986533 234567899999999874    3348888999999999


Q ss_pred             EEEEccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCCC
Q 013941          169 CIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKDG  248 (433)
Q Consensus       169 ~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~~  248 (433)
                      ++||||++++|.+++.... ..+++..+..++.|++.||+|||++|||||||||+|||++....                
T Consensus        77 ~~vme~~~~~l~~~~~~~~-~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~----------------  139 (293)
T d1csna_          77 VLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNS----------------  139 (293)
T ss_dssp             EEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSS----------------
T ss_pred             EEEEEecCCCHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCccc----------------
Confidence            9999999999999987654 47999999999999999999999999999999999999975321                


Q ss_pred             CcccCCCCCCCeeeecCCCCccccCC----------CcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCC
Q 013941          249 SYFKNLPKSSAIKLIDFGSTTFEHQD----------HSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALF  318 (433)
Q Consensus       249 ~~~~~~~~~~~~kl~Dfg~a~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf  318 (433)
                            .....+||+|||+|+.....          ....+||+.|||||++.+..++.++|||||||++|||++|..||
T Consensus       140 ------~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf  213 (293)
T d1csna_         140 ------KNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPW  213 (293)
T ss_dssp             ------TTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ------ccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcC
Confidence                  23456889999988754321          23358999999999999999999999999999999999999999


Q ss_pred             CCCChHHH---HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHH
Q 013941          319 QTHENLEH---LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDL  395 (433)
Q Consensus       319 ~~~~~~~~---~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  395 (433)
                      .+......   ...+.......+                                             ..+....+++++
T Consensus       214 ~~~~~~~~~~~~~~i~~~~~~~~---------------------------------------------~~~l~~~~p~~l  248 (293)
T d1csna_         214 QGLKAATNKQKYERIGEKKQSTP---------------------------------------------LRELCAGFPEEF  248 (293)
T ss_dssp             SSCCSCCHHHHHHHHHHHHHHSC---------------------------------------------HHHHTTTSCHHH
T ss_pred             CCccchhHHHHHHHHHhccCCCC---------------------------------------------hHHhcCCCCHHH
Confidence            76543222   222221110000                                             011223457789


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q 013941          396 IDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       396 ~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      .+++..|+..+|++||+.+.+.+
T Consensus       249 ~~ii~~~~~~~~~~rP~y~~l~~  271 (293)
T d1csna_         249 YKYMHYARNLAFDATPDYDYLQG  271 (293)
T ss_dssp             HHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             HHHHHHHhcCCcccCcCHHHHHH
Confidence            99999999999999999776643

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-51  Score=379.65  Aligned_cols=247  Identities=21%  Similarity=0.282  Sum_probs=198.7

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcE--EEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceeccCC
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKEL--VAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFDYRN  166 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~--vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~~~~  166 (433)
                      ++|++.+.||+|+||+||+|+++.++..  ||||.++..  ....+.+.+|+.+|.++ +|+||     +++++++.+.+
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnI-----v~~~~~~~~~~   84 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI-----INLLGACEHRG   84 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTB-----CCEEEEEEETT
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCE-----eeEEEEEecCC
Confidence            4799999999999999999999888874  677777532  23445788999999998 57777     99999999999


Q ss_pred             eEEEEEccC-CCCHHHHHHhc--------------CCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCC
Q 013941          167 HICIVFEKL-GPSLYDFLRKN--------------SYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAE  231 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~--------------~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~  231 (433)
                      .+++||||+ +|+|.+++...              ....+++..+..++.||+.||.|||++||+||||||+|||++.++
T Consensus        85 ~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~  164 (309)
T d1fvra_          85 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENY  164 (309)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGG
T ss_pred             eeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCC
Confidence            999999999 99999999754              224799999999999999999999999999999999999997655


Q ss_pred             cccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC--cccccCCcccchhhhhCCCCCccchHHHHHHHHH
Q 013941          232 YVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH--SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILV  309 (433)
Q Consensus       232 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~  309 (433)
                                                 .+||+|||++.......  ....||..|+|||.+.+..++.++|||||||++|
T Consensus       165 ---------------------------~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~  217 (309)
T d1fvra_         165 ---------------------------VAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLW  217 (309)
T ss_dssp             ---------------------------CEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHH
T ss_pred             ---------------------------ceEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHH
Confidence                                       56777777775443322  2347899999999999999999999999999999


Q ss_pred             HHHhCC-CCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhcc
Q 013941          310 ELCSGE-ALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHV  388 (433)
Q Consensus       310 el~~g~-~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (433)
                      ||++|. +||.+.+..+....+.+..                       +.                          ..+
T Consensus       218 ell~~~~~p~~~~~~~~~~~~i~~~~-----------------------~~--------------------------~~~  248 (309)
T d1fvra_         218 EIVSLGGTPYCGMTCAELYEKLPQGY-----------------------RL--------------------------EKP  248 (309)
T ss_dssp             HHHTTSCCTTTTCCHHHHHHHGGGTC-----------------------CC--------------------------CCC
T ss_pred             HHHhcCCCCCCCCCHHHHHHHHHhcC-----------------------CC--------------------------CCC
Confidence            999965 6787776655444332210                       00                          112


Q ss_pred             CCchHHHHHHHHHhcccCCCCCCCHHHHhcC
Q 013941          389 DHSAGDLIDLLQGLLRYDPAERLKAREALRH  419 (433)
Q Consensus       389 ~~~~~~l~~li~~~L~~dP~~R~ta~ell~h  419 (433)
                      ..+++++.+||.+||+.||++|||++||++|
T Consensus       249 ~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         249 LNCDDEVYDLMRQCWREKPYERPSFAQILVS  279 (309)
T ss_dssp             TTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            3457799999999999999999999999986

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-49  Score=371.36  Aligned_cols=252  Identities=23%  Similarity=0.342  Sum_probs=198.4

Q ss_pred             CCeEEeccccccccEEEEEEEe-----cCCCcEEEEEEeccc--hhhHHHHHHHHHHHHHH-HhCCCCCcceeEecceec
Q 013941           92 PRYRILSKMGEGTFGQVVECFD-----NEKKELVAIKIVRSI--NKYREAAMIEIDVLQRL-ARHDIGGTRCVQIRNWFD  163 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~-----~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l-~~~~i~~~~~v~~~~~~~  163 (433)
                      ++|++.++||+|+||.||+|++     ..+++.||||+++..  ......+.+|+.++.++ +|+||     |++++++.
T Consensus        23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnI-----v~~~g~~~   97 (311)
T d1t46a_          23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNI-----VNLLGACT   97 (311)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTB-----CCEEEEEC
T ss_pred             HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCE-----EEEEEEEe
Confidence            5799999999999999999985     346779999999753  33455688999999999 47766     99999999


Q ss_pred             cCCeEEEEEccC-CCCHHHHHHhcC----------------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEE
Q 013941          164 YRNHICIVFEKL-GPSLYDFLRKNS----------------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENIL  226 (433)
Q Consensus       164 ~~~~~~lv~e~~-~~~L~~~l~~~~----------------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIl  226 (433)
                      +.+.+++||||| +|+|.+++....                ...+++..+..++.||+.||+|||++|||||||||+|||
T Consensus        98 ~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl  177 (311)
T d1t46a_          98 IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNIL  177 (311)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             eCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccccc
Confidence            999999999999 999999997643                135899999999999999999999999999999999999


Q ss_pred             EeeCCcccccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHH
Q 013941          227 LVSAEYVKVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGC  306 (433)
Q Consensus       227 i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~  306 (433)
                      ++.++.++++|||+++.......                      ........||+.|+|||++.+..++.++|||||||
T Consensus       178 ~~~~~~~ki~DfG~~~~~~~~~~----------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~  235 (311)
T d1t46a_         178 LTHGRITKICDFGLARDIKNDSN----------------------YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGI  235 (311)
T ss_dssp             EETTTEEEECCCGGGSCTTSCTT----------------------SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHH
T ss_pred             ccccCcccccccchheeccCCCc----------------------ceEeeecccChHHcCHHHhcCCCCCCcccccchHH
Confidence            98777655555554432211110                      00112247899999999999999999999999999


Q ss_pred             HHHHHHh-CCCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhh
Q 013941          307 ILVELCS-GEALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIM  385 (433)
Q Consensus       307 il~el~~-g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (433)
                      ++|||+| |.+||.+.+....+..+.+.-..+                                                
T Consensus       236 ~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~------------------------------------------------  267 (311)
T d1t46a_         236 FLWELFSLGSSPYPGMPVDSKFYKMIKEGFRM------------------------------------------------  267 (311)
T ss_dssp             HHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCC------------------------------------------------
T ss_pred             HHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCC------------------------------------------------
Confidence            9999998 677776665544444333211100                                                


Q ss_pred             hccCCchHHHHHHHHHhcccCCCCCCCHHHHhc
Q 013941          386 QHVDHSAGDLIDLLQGLLRYDPAERLKAREALR  418 (433)
Q Consensus       386 ~~~~~~~~~l~~li~~~L~~dP~~R~ta~ell~  418 (433)
                      ......+.++.+||.+||+.||++|||++||++
T Consensus       268 ~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         268 LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            111345678999999999999999999999985

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-50  Score=374.22  Aligned_cols=252  Identities=21%  Similarity=0.320  Sum_probs=207.0

Q ss_pred             CCeEEeccccccccEEEEEEEecC-----CCcEEEEEEeccch--hhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNE-----KKELVAIKIVRSIN--KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY  164 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~-----~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~  164 (433)
                      ++|++.++||+|+||+||+|.+..     ++..||||+++...  .....+.+|+.++++++|+||     +++++++..
T Consensus        20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nI-----v~~~~~~~~   94 (308)
T d1p4oa_          20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV-----VRLLGVVSQ   94 (308)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTB-----CCEEEEECS
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCE-----eeeeeEEec
Confidence            689999999999999999998753     45789999997532  334567899999999988877     999999999


Q ss_pred             CCeEEEEEccC-CCCHHHHHHhcC--------CCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccc
Q 013941          165 RNHICIVFEKL-GPSLYDFLRKNS--------YRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKV  235 (433)
Q Consensus       165 ~~~~~lv~e~~-~~~L~~~l~~~~--------~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l  235 (433)
                      .+..++||||| +|+|.+++....        ...+++..+..++.||+.||.|||+++|+||||||+|||++.++    
T Consensus        95 ~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~----  170 (308)
T d1p4oa_          95 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDF----  170 (308)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTC----
T ss_pred             CCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCc----
Confidence            99999999999 999999986431        13478999999999999999999999999999999999996554    


Q ss_pred             cCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCC-----cccccCCcccchhhhhCCCCCccchHHHHHHHHHH
Q 013941          236 PDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDH-----SYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVE  310 (433)
Q Consensus       236 ~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~e  310 (433)
                                             .+||+|||+|.......     ....||+.|+|||.+.+..++.++|||||||++||
T Consensus       171 -----------------------~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~E  227 (308)
T d1p4oa_         171 -----------------------TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE  227 (308)
T ss_dssp             -----------------------CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             -----------------------eEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHH
Confidence                                   57788888776543322     22478999999999999999999999999999999


Q ss_pred             HHhC-CCCCCCCChHHHHHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccC
Q 013941          311 LCSG-EALFQTHENLEHLAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVD  389 (433)
Q Consensus       311 l~~g-~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (433)
                      |+|| ..||.+.+..+.+..+.+..  .+                                               ....
T Consensus       228 l~t~~~~p~~~~~~~~~~~~i~~~~--~~-----------------------------------------------~~p~  258 (308)
T d1p4oa_         228 IATLAEQPYQGLSNEQVLRFVMEGG--LL-----------------------------------------------DKPD  258 (308)
T ss_dssp             HHHTSCCTTTTSCHHHHHHHHHTTC--CC-----------------------------------------------CCCT
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHhCC--CC-----------------------------------------------CCcc
Confidence            9998 58888877766665543311  00                                               1123


Q ss_pred             CchHHHHHHHHHhcccCCCCCCCHHHHhc------CCCCCC
Q 013941          390 HSAGDLIDLLQGLLRYDPAERLKAREALR------HPFFTR  424 (433)
Q Consensus       390 ~~~~~l~~li~~~L~~dP~~R~ta~ell~------hp~f~~  424 (433)
                      .++..+.+||.+||+.||++|||++||++      +|+|++
T Consensus       259 ~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         259 NCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHH
T ss_pred             cchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCcC
Confidence            45678999999999999999999999997      777764

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-48  Score=361.06  Aligned_cols=256  Identities=16%  Similarity=0.198  Sum_probs=192.2

Q ss_pred             EEeccccccccEEEEEEEecCCC---cEEEEEEecc--chhhHHHHHHHHHHHHHHHhCCCCCcceeEecceecc-CCeE
Q 013941           95 RILSKMGEGTFGQVVECFDNEKK---ELVAIKIVRS--INKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDY-RNHI  168 (433)
Q Consensus        95 ~~~~~lg~G~~g~V~~~~~~~~~---~~vavK~~~~--~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~-~~~~  168 (433)
                      .+.++||+|+||+||+|++..++   ..||||+++.  .....+.+.+|++++.+++|+||     +++++++.. ++..
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnI-----v~~~g~~~~~~~~~  104 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNV-----LSLLGICLRSEGSP  104 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTB-----CCCCEEEEETTTEE
T ss_pred             ccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCE-----eEEeEEEEecCCce
Confidence            34678999999999999986643   3689999864  33445778999999999998887     999998754 6789


Q ss_pred             EEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcccccCccccccCCCC
Q 013941          169 CIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYVKVPDYKFLSRSSKD  247 (433)
Q Consensus       169 ~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~~l~d~~~~~~~~~~  247 (433)
                      ++||||| +++|.+++.... ..+++..+..++.||+.||.|||+.+|+||||||+|||+++++.+||+|||++......
T Consensus       105 ~lv~E~~~~g~l~~~~~~~~-~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~  183 (311)
T d1r0pa_         105 LVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK  183 (311)
T ss_dssp             EEEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTT
T ss_pred             EEEEEEeecCchhhhhcccc-ccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhcccc
Confidence            9999999 999999987554 46788899999999999999999999999999999999977665555444444322211


Q ss_pred             CCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccchhhhhCCCCCccchHHHHHHHHHHHHhCCCCCCCCChH-HH
Q 013941          248 GSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENL-EH  326 (433)
Q Consensus       248 ~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pf~~~~~~-~~  326 (433)
                      ..                    ..........||..|+|||.+.+..++.++|||||||++|||++|..||...... +.
T Consensus       184 ~~--------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~  243 (311)
T d1r0pa_         184 EF--------------------DSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDI  243 (311)
T ss_dssp             TC--------------------CCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------C
T ss_pred             cc--------------------ccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHH
Confidence            10                    0001112247899999999999999999999999999999999987777543322 21


Q ss_pred             HHHHHHHhcCCChhhHHhhhhhhhhhhcCCccccCCCCCCchhhHHHHHHhcCchhhhhhccCCchHHHHHHHHHhcccC
Q 013941          327 LAMMERVLGPLPHHMVIRADRRAEKYFRRGARLDWPDGATSRDSMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYD  406 (433)
Q Consensus       327 ~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  406 (433)
                      ...+..  +.                     +.                          ..+..+++++.+||.+||+.|
T Consensus       244 ~~~i~~--g~---------------------~~--------------------------~~p~~~~~~l~~li~~cl~~d  274 (311)
T d1r0pa_         244 TVYLLQ--GR---------------------RL--------------------------LQPEYCPDPLYEVMLKCWHPK  274 (311)
T ss_dssp             HHHHHT--TC---------------------CC--------------------------CCCTTCCHHHHHHHHHHTCSS
T ss_pred             HHHHHc--CC---------------------CC--------------------------CCcccCcHHHHHHHHHHcCCC
Confidence            111111  00                     00                          112345678999999999999


Q ss_pred             CCCCCCHHHHhcC------CCCCCC
Q 013941          407 PAERLKAREALRH------PFFTRD  425 (433)
Q Consensus       407 P~~R~ta~ell~h------p~f~~~  425 (433)
                      |++|||+.||++|      .|..++
T Consensus       275 P~~RPs~~ei~~~L~~i~~~~~~~~  299 (311)
T d1r0pa_         275 AEMRPSFSELVSRISAIFSTFIGEH  299 (311)
T ss_dssp             GGGSCCHHHHHHHHHHHHHTCCSCC
T ss_pred             HhHCcCHHHHHHHHHHHHHhhhhhh
Confidence            9999999999988      666654

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-48  Score=364.14  Aligned_cols=193  Identities=22%  Similarity=0.257  Sum_probs=153.9

Q ss_pred             CCCeEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCC----
Q 013941           91 TPRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRN----  166 (433)
Q Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~----  166 (433)
                      ...|.+.+.||+|+||.||+|+.  +|+.||||+++...........|+..+..++|+||     +++++++.+.+    
T Consensus         2 ~~~~~l~~~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnI-----v~~~~~~~~~~~~~~   74 (303)
T d1vjya_           2 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENI-----LGFIAADNKDNGTWT   74 (303)
T ss_dssp             GGGEEEEEEEECCSSSEEEEEEE--TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTB-----CCEEEEEEEECSSSE
T ss_pred             CcEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcC-----cceEEEEEeCCCcce
Confidence            35689999999999999999985  68899999997554433333344444455666666     99999987543    


Q ss_pred             eEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHh--------CCcEecCCCCCcEEEeeCCcccccC
Q 013941          167 HICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHE--------LRLIHTDLKPENILLVSAEYVKVPD  237 (433)
Q Consensus       167 ~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~--------~~ivHrDikp~NIli~~~~~~~l~d  237 (433)
                      .+|+||||| +|+|.+++.+.   .+++..+..++.|++.||+|||+        +|||||||||+||||+.++      
T Consensus        75 ~~~lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~------  145 (303)
T d1vjya_          75 QLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG------  145 (303)
T ss_dssp             EEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTS------
T ss_pred             EEEEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCC------
Confidence            789999999 99999999875   59999999999999999999996        5999999999999997665      


Q ss_pred             ccccccCCCCCCcccCCCCCCCeeeecCCCCccccCC-------CcccccCCcccchhhhhCCC------CCccchHHHH
Q 013941          238 YKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQD-------HSYVVSTRHYRAPEVILGLG------WNYPCDLWSV  304 (433)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~gt~~y~aPE~~~~~~------~~~~~DiwSl  304 (433)
                                           .+||+|||++......       .....||+.|+|||++.+..      ++.++|||||
T Consensus       146 ---------------------~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~  204 (303)
T d1vjya_         146 ---------------------TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAM  204 (303)
T ss_dssp             ---------------------CEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHH
T ss_pred             ---------------------CeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhh
Confidence                                 4666666666543221       12357999999999997653      5678999999


Q ss_pred             HHHHHHHHhCCCCCCC
Q 013941          305 GCILVELCSGEALFQT  320 (433)
Q Consensus       305 G~il~el~~g~~pf~~  320 (433)
                      ||+||||+||..||..
T Consensus       205 Gvvl~el~tg~~~~~~  220 (303)
T d1vjya_         205 GLVFWEIARRCSIGGI  220 (303)
T ss_dssp             HHHHHHHHHTBCBTTB
T ss_pred             HHHHHHHhhCCCCCCc
Confidence            9999999999988754

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=1.9e-26  Score=198.90  Aligned_cols=162  Identities=21%  Similarity=0.239  Sum_probs=115.2

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccch-------------------hhHHHHHHHHHHHHHHHhCCCCCcc
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-------------------KYREAAMIEIDVLQRLARHDIGGTR  154 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------------------~~~~~~~~E~~~l~~l~~~~i~~~~  154 (433)
                      |.+.++||+|+||+||+|++. +|+.||||+++...                   .......+|...+.++.+.++    
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~-~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v----   76 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAV----   76 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET-TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSS----
T ss_pred             chhCCEeeeCcceEEEEEECC-CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCc----
Confidence            468899999999999999974 68899999875211                   112334567888888877665    


Q ss_pred             eeEecceeccCCeEEEEEccC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcEecCCCCCcEEEeeCCcc
Q 013941          155 CVQIRNWFDYRNHICIVFEKL-GPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHELRLIHTDLKPENILLVSAEYV  233 (433)
Q Consensus       155 ~v~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIli~~~~~~  233 (433)
                       +..+++..    .+++|||+ +..+.         .++...+..++.||+.||+|||++||+||||||+|||++.++  
T Consensus        77 -~~~~~~~~----~~lvme~~~~~~~~---------~l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~~--  140 (191)
T d1zara2          77 -PKVYAWEG----NAVLMELIDAKELY---------RVRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEG--  140 (191)
T ss_dssp             -CCEEEEET----TEEEEECCCCEEGG---------GCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETTE--
T ss_pred             -ceEEEecC----CEEEEEeecccccc---------chhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCCC--
Confidence             55444322    27999999 43332         255566788999999999999999999999999999997533  


Q ss_pred             cccCccccccCCCCCCcccCCCCCCCeeeecCCCCccccCCCcccccCCcccch------hhhhCCCCCccchHHHHHHH
Q 013941          234 KVPDYKFLSRSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAP------EVILGLGWNYPCDLWSVGCI  307 (433)
Q Consensus       234 ~l~d~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~gt~~y~aP------E~~~~~~~~~~~DiwSlG~i  307 (433)
                                                ++|+|||.|.........     .|...      +. ....|+.++|+||+.--
T Consensus       141 --------------------------~~liDFG~a~~~~~~~~~-----~~l~rd~~~~~~~-f~r~y~~~~d~~s~~~~  188 (191)
T d1zara2         141 --------------------------IWIIDFPQSVEVGEEGWR-----EILERDVRNIITY-FSRTYRTEKDINSAIDR  188 (191)
T ss_dssp             --------------------------EEECCCTTCEETTSTTHH-----HHHHHHHHHHHHH-HHHHHCCCCCHHHHHHH
T ss_pred             --------------------------EEEEECCCcccCCCCCcH-----HHHHHHHHHHHHH-HcCCCCCcccHHHHHHH
Confidence                                      788999988654432211     12111      11 13468899999998644


Q ss_pred             H
Q 013941          308 L  308 (433)
Q Consensus       308 l  308 (433)
                      +
T Consensus       189 ~  189 (191)
T d1zara2         189 I  189 (191)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.42  E-value=4.8e-07  Score=79.69  Aligned_cols=85  Identities=12%  Similarity=0.084  Sum_probs=59.0

Q ss_pred             CCeEEeccccccccEEEEEEEecCCCcEEEEEEeccch-hhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEE
Q 013941           92 PRYRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSIN-KYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICI  170 (433)
Q Consensus        92 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~l  170 (433)
                      +.|++++..+.++.+.||+..  .+++.+++|+..... .......+|...+..+.. .+.   +.+++.+..+++..++
T Consensus        14 ~~~~~~~~~~G~s~~~v~rv~--~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~-~vp---vP~vl~~~~~~~~~~l   87 (263)
T d1j7la_          14 EKYRCVKDTEGMSPAKVYKLV--GENENLYLKMTDSRYKGTTYDVEREKDMMLWLEG-KLP---VPKVLHFERHDGWSNL   87 (263)
T ss_dssp             TTSEEEECSCCCSSSEEEEEE--CSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTT-TSC---CCCEEEEEEETTEEEE
T ss_pred             hceEEEEcCCCCCCCcEEEEE--eCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhc-cCC---CCcEEEEEecCCceEE
Confidence            467888876666678999886  455667888875432 233456789999888853 232   3455666677889999


Q ss_pred             EEccC-CCCHHHH
Q 013941          171 VFEKL-GPSLYDF  182 (433)
Q Consensus       171 v~e~~-~~~L~~~  182 (433)
                      ||+++ |.++.+.
T Consensus        88 v~~~l~G~~~~~~  100 (263)
T d1j7la_          88 LMSEADGVLCSEE  100 (263)
T ss_dssp             EEECCSSEEHHHH
T ss_pred             EEEeccccccccc
Confidence            99999 7676544

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=98.05  E-value=1.2e-05  Score=74.97  Aligned_cols=77  Identities=21%  Similarity=0.207  Sum_probs=47.6

Q ss_pred             eccccccccEEEEEEEecCCCcEEEEEEeccc--------hhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeE
Q 013941           97 LSKMGEGTFGQVVECFDNEKKELVAIKIVRSI--------NKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHI  168 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--------~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~  168 (433)
                      .+.||.|....||++.+..+++.|+||.-...        .........|...|+.+....  ...+.+++.+  +....
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~--p~~vP~v~~~--d~~~~  106 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHV--PHLVPRVFYS--DTEMA  106 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTC--GGGSCCEEEE--ETTTT
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhC--CCCcceEEEE--cCCCC
Confidence            45789999999999998888888999964321        112234567888888776431  1223444443  33445


Q ss_pred             EEEEccC-CC
Q 013941          169 CIVFEKL-GP  177 (433)
Q Consensus       169 ~lv~e~~-~~  177 (433)
                      ++|||++ +.
T Consensus       107 ~lvmE~L~~~  116 (392)
T d2pula1         107 VTVMEDLSHL  116 (392)
T ss_dssp             EEEECCCTTS
T ss_pred             EEEEeccCCc
Confidence            7899999 43

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.88  E-value=1.3e-05  Score=69.71  Aligned_cols=74  Identities=15%  Similarity=0.121  Sum_probs=51.8

Q ss_pred             ccccc-cEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEEEEEccC-CC
Q 013941          100 MGEGT-FGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHICIVFEKL-GP  177 (433)
Q Consensus       100 lg~G~-~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~lv~e~~-~~  177 (433)
                      +..|. .+.||+... .++..+++|......  ...+..|...++.+...++.   +.+++.+..+++..++||+++ |.
T Consensus        18 ~~~G~s~~~v~r~~~-~~~~~~vlK~~~~~~--~~~l~~E~~~l~~L~~~gvp---vP~v~~~~~~~~~~~~v~~~i~G~   91 (255)
T d1nd4a_          18 QTIGCSDAAVFRLSA-QGRPVLFVKTDLSGA--LNELQDEAARLSWLATTGVP---CAAVLDVVTEAGRDWLLLGEVPGQ   91 (255)
T ss_dssp             CSCTTSSCEEEEEEC-TTSCCEEEEEECSCT--TSCHHHHHHHHHHHHTTTCC---BCCEEEEEECSSCEEEEEECCSSE
T ss_pred             cCCcccCCeEEEEEe-CCCCEEEEEeCCccC--HhHHHHHHHHHHHHHhcCCC---CCceeeecccccceEEEEEeeecc
Confidence            34444 467999874 456668899876443  23467899999999887764   345555666778899999999 65


Q ss_pred             CH
Q 013941          178 SL  179 (433)
Q Consensus       178 ~L  179 (433)
                      ++
T Consensus        92 ~~   93 (255)
T d1nd4a_          92 DL   93 (255)
T ss_dssp             ET
T ss_pred             cc
Confidence            54

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=5.5e-05  Score=68.39  Aligned_cols=70  Identities=16%  Similarity=0.216  Sum_probs=50.8

Q ss_pred             EEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEec--ceeccCCeEEEEEccCC
Q 013941          106 GQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIR--NWFDYRNHICIVFEKLG  176 (433)
Q Consensus       106 g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~--~~~~~~~~~~lv~e~~~  176 (433)
                      ..||+++. .+|+.|++|+.+......+.+..|...+..|...++..+..+..-  ..+..++..+.++++++
T Consensus        36 N~vy~v~~-~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~  107 (325)
T d1zyla1          36 NRVYQFQD-EDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVG  107 (325)
T ss_dssp             SEEEEECC-TTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCC
T ss_pred             ceeEEEEc-CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecC
Confidence            58999975 567889999987665556778889999999998877443333322  12344677899999984

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.39  E-value=0.00043  Score=64.11  Aligned_cols=72  Identities=14%  Similarity=0.183  Sum_probs=50.9

Q ss_pred             eccccccccEEEEEEEecC-------CCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecceeccCCeEE
Q 013941           97 LSKMGEGTFGQVVECFDNE-------KKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRNWFDYRNHIC  169 (433)
Q Consensus        97 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~~~~~~~~~~  169 (433)
                      ++.|+.|-.-.+|++....       ..+.|.+++.-... ......+|..+++.+...++.    .+++.++.+    .
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~-~~idr~~E~~i~~~ls~~gl~----Pkll~~~~~----g  117 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE-TESHLVAESVIFTLLSERHLG----PKLYGIFSG----G  117 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC-CHHHHHHHHHHHHHHHHTTSS----SCEEEEETT----E
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcc-hhhHHHHHHHHHHHHHhCCCC----CeEEEEcCC----c
Confidence            4678889999999998643       34568888875322 234466899999999887762    455665553    5


Q ss_pred             EEEccC-CC
Q 013941          170 IVFEKL-GP  177 (433)
Q Consensus       170 lv~e~~-~~  177 (433)
                      +||||+ |.
T Consensus       118 ~I~efi~g~  126 (395)
T d1nw1a_         118 RLEEYIPSR  126 (395)
T ss_dssp             EEECCCCEE
T ss_pred             eEEEEeccc
Confidence            889998 53

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.13  E-value=0.00087  Score=59.79  Aligned_cols=79  Identities=9%  Similarity=0.062  Sum_probs=46.3

Q ss_pred             eEEeccccccccEEEEEEEecCCCcEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCCCcceeEecc---eeccCCeEEE
Q 013941           94 YRILSKMGEGTFGQVVECFDNEKKELVAIKIVRSINKYREAAMIEIDVLQRLARHDIGGTRCVQIRN---WFDYRNHICI  170 (433)
Q Consensus        94 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~v~~~~---~~~~~~~~~l  170 (433)
                      ..-.+.|..|---+.|+.... +| .+++|++... ...+.+..|+.++..|...++..+..+...+   +....+..+.
T Consensus        20 ~~~~~~i~~G~~N~ny~v~t~-~g-~yVLri~~~~-~~~~~l~~~~~~l~~L~~~g~pvp~pi~~~~g~~~~~~~~~~~~   96 (316)
T d2ppqa1          20 LTSYKGIAEGVENSNFLLHTT-KD-PLILTLYEKR-VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAA   96 (316)
T ss_dssp             EEEEEEECC---EEEEEEEES-SC-CEEEEEECC----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEE
T ss_pred             ceEeecCCCCcccCeEEEEEC-CC-cEEEEEcCCC-CCHHHHHHHHHHHHhhhhccccccccceecCCCcceeeecccce
Confidence            344566778887889998743 34 4899998653 2334566789999999988875554443322   1112345556


Q ss_pred             EEccC
Q 013941          171 VFEKL  175 (433)
Q Consensus       171 v~e~~  175 (433)
                      ++.+.
T Consensus        97 ~~~~~  101 (316)
T d2ppqa1          97 LISFL  101 (316)
T ss_dssp             EEECC
T ss_pred             eeeec
Confidence            66655