BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013943
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 135/330 (40%), Gaps = 65/330 (19%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGF 96
V++G G SGL+ L+ G+ ++L+ WQ + L L P + +P
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ-HAWHSLHLFSPAGWSSIPGWPM 65
Query: 97 PSEFPTYPSKQQFVDYLEAYAKRFEI---RPRFNETVSQAEYDATIRFWRVKTTVGGQKC 153
P+ YP++ + + YL Y +++ + RP IR RV G++
Sbjct: 66 PASQGPYPARAEVLAYLAQYEQKYALPVLRP--------------IRVQRVSHF--GERL 109
Query: 154 GV---EEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVV 210
V + ++ R ++ ATG EA PE +G + F G H++ Y + F G RV ++
Sbjct: 110 RVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAII 169
Query: 211 GCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLL 270
G GNSG ++ ++ ST + W+ + P L D +
Sbjct: 170 GGGNSGAQILAEV-------------------------STVAETTWITQHEPAFLADDVD 204
Query: 271 LVVSWLMLGDTARFGLDR----PLLGPLQLKNLSGKTPVLDA---GTLAKIKSGHIRVFP 323
V L T R+ + P L P ++ PVLDA G LA + P
Sbjct: 205 GRV--LFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAV--------P 254
Query: 324 GIKRLKRYAVEFVNGRCENFDAIILATGYR 353
R +++ +G FDA+I TG+R
Sbjct: 255 PPARFSPTGMQWADGTERAFDAVIWCTGFR 284
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 98/221 (44%), Gaps = 41/221 (18%)
Query: 23 MNKSSPRCICVPGP-----------VIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71
MN PR + V P V+VGAG +GL + +G+ E ++ + +
Sbjct: 1 MNGQHPRSV-VTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGV 59
Query: 72 WQLKTYDRLRLHLPKQFCELPLMGFPSEFP-----------TYPSKQQFVDYLEAYAKRF 120
W Y P C++ + + F Y ++ + + YLE A RF
Sbjct: 60 WYWNRY-------PGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRF 112
Query: 121 EIRP--RFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178
++R RF+ V+ A D W V+T G E R+LVVA G + A P
Sbjct: 113 DLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGD--------EVSARFLVVAAGPLSNANTP 164
Query: 179 EIEGSDEFGGDIRHTSLY-KSGEDFRGKRVLVVGCGNSGME 218
+G D F GDI HT+ + G DF GKRV V+G G+SG++
Sbjct: 165 AFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQ 205
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 98/221 (44%), Gaps = 41/221 (18%)
Query: 23 MNKSSPRCICVPGP-----------VIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71
MN PR + V P V+VGAG +GL + +G+ E ++ + +
Sbjct: 1 MNGQHPRSV-VTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGV 59
Query: 72 WQLKTYDRLRLHLPKQFCELPLMGFPSEFP-----------TYPSKQQFVDYLEAYAKRF 120
W Y P C++ + + F Y ++ + + YLE A RF
Sbjct: 60 WYWNRY-------PGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRF 112
Query: 121 EIRP--RFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178
++R RF+ V+ A D W V+T G E R+LVVA G + A P
Sbjct: 113 DLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGD--------EVSARFLVVAAGPLSNANTP 164
Query: 179 EIEGSDEFGGDIRHTSLY-KSGEDFRGKRVLVVGCGNSGME 218
+G D F GDI HT+ + G DF GKRV V+G G+SG++
Sbjct: 165 AFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQ 205
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 98/221 (44%), Gaps = 41/221 (18%)
Query: 23 MNKSSPRCICVPGP-----------VIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71
MN PR + V P V+VGAG +GL + +G+ E ++ + +
Sbjct: 1 MNGQHPRSV-VTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGV 59
Query: 72 WQLKTYDRLRLHLPKQFCELPLMGFPSEFP-----------TYPSKQQFVDYLEAYAKRF 120
W Y P C++ + + F Y ++ + + YLE A RF
Sbjct: 60 WYWNRY-------PGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEILAYLEHVADRF 112
Query: 121 EIRP--RFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178
++R RF+ V+ A D W V+T G E R+LVVA G + A P
Sbjct: 113 DLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGD--------EVSARFLVVAAGPLSNANTP 164
Query: 179 EIEGSDEFGGDIRHTSLY-KSGEDFRGKRVLVVGCGNSGME 218
+G D F GDI HT+ + G DF GKRV V+G G+SG++
Sbjct: 165 AFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQ 205
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPK-QFCELPLMG 95
++VGAG SGL L+E G ++E + + +W Y R + ++C
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYC----YS 75
Query: 96 FPSEF-------PTYPSKQQFVDYLEAYAKRFEIRP--RFNETVSQAEYDATIRFWRVKT 146
F E Y S+ + + Y+ A +F++R F+ TV+ A +D W V T
Sbjct: 76 FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT 135
Query: 147 TVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLY-KSGEDFRGK 205
G + R R+L++A+G+ + +P G +F G++ HT + DF G+
Sbjct: 136 NHGDR--------IRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 206 RVLVVGCGNSGMEVCLDLCNHDA 228
RV V+G G+SG++V + A
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPK-QFCELPLMG 95
++VGAG SGL L+E G ++E + + +W Y R + ++C
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYC----YS 75
Query: 96 FPSEF-------PTYPSKQQFVDYLEAYAKRFEIRP--RFNETVSQAEYDATIRFWRVKT 146
F E Y S+ + + Y+ A +F++R F+ TV+ A +D W V T
Sbjct: 76 FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT 135
Query: 147 TVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLY-KSGEDFRGK 205
G + R R+L++A+G+ + +P G +F G++ HT + DF G+
Sbjct: 136 NHGDR--------IRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 206 RVLVVGCGNSGMEVCLDLCNHDA 228
RV V+G G+SG++V + A
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPK-QFCELPLMG 95
++VGAG SGL L+E G ++E + + +W Y R + ++C
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYC----YS 75
Query: 96 FPSEF-------PTYPSKQQFVDYLEAYAKRFEIRP--RFNETVSQAEYDATIRFWRVKT 146
F E Y S+ + + Y+ A +F++R F+ TV+ A +D W V T
Sbjct: 76 FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT 135
Query: 147 TVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLY-KSGEDFRGK 205
G + R R+L++A+G+ + +P G +F G++ HT + DF G+
Sbjct: 136 NHGDR--------IRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 206 RVLVVGCGNSGMEVCLDLCNHDA 228
RV V+G G+SG++V + A
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPK-QFCELPLMG 95
++VGAG SGL L+E G ++E + + +W Y R + ++C
Sbjct: 20 LVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCAIESIEYC----YS 75
Query: 96 FPSEF-------PTYPSKQQFVDYLEAYAKRFEIRP--RFNETVSQAEYDATIRFWRVKT 146
F E Y S+ + + Y+ A +F++R F+ TV+ A +D W V T
Sbjct: 76 FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT 135
Query: 147 TVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLY-KSGEDFRGK 205
G + R R+L++A+G+ + +P G +F G++ HT + DF G+
Sbjct: 136 NHGDR--------IRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQ 187
Query: 206 RVLVVGCGNSGMEVCLDLCNHDA 228
RV V+G G+SG++V + A
Sbjct: 188 RVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPK-QFCELPLMG 95
V++GAG +G+ A + + G+ + +E + W Y RL + L G
Sbjct: 13 VVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKG 72
Query: 96 FPSEFP---TYPSKQQFVDYLEAYAKRFEIRP--RFNETVSQAEYDATIRFWRVKTTVGG 150
E+ + S+ + + Y+ A ++R RFN V+ A Y R W V
Sbjct: 73 IIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLD--- 129
Query: 151 QKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKS-------GEDFR 203
E CR+L+ ATG + + +P+I+G D F G+ H+S + + G DF
Sbjct: 130 -----NEEVVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFT 184
Query: 204 GKRVLVVGCGNSGMEV 219
GKRV V+G G +G+++
Sbjct: 185 GKRVGVIGTGATGVQI 200
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 15/213 (7%)
Query: 37 VIVGAGPSGL-ATAACLKERGIPSILLERSNCIASLWQLKTY----DRLRLHLPKQFCEL 91
V++GAG G+ A E G+ ++ ++++ W Y HL + +
Sbjct: 12 VVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDR 71
Query: 92 PLMGFPSEFPTYPSKQQFVDYLEAYAKRFEIRP--RFNETVSQAEYDATIRFWRVKTTVG 149
L+ + TY ++ + ++YLE RF++R +F V+ A Y W V T G
Sbjct: 72 DLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG 131
Query: 150 GQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLV 209
YR +++V A G + P + G D F G+ HT+ + G+ G+RV V
Sbjct: 132 --------EVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGV 183
Query: 210 VGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLP 242
+G G++G +V L ++ VR + +P
Sbjct: 184 IGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVP 216
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 15/213 (7%)
Query: 37 VIVGAGPSGL-ATAACLKERGIPSILLERSNCIASLWQLKTY----DRLRLHLPKQFCEL 91
V++GAG G+ A E G+ ++ ++++ W Y HL + +
Sbjct: 45 VVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDR 104
Query: 92 PLMGFPSEFPTYPSKQQFVDYLEAYAKRFEIRP--RFNETVSQAEYDATIRFWRVKTTVG 149
L+ + TY ++ + ++YLE RF++R +F V+ A Y W V T G
Sbjct: 105 DLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG 164
Query: 150 GQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLV 209
YR +++V A G + P + G D F G+ HT+ + G+ G+RV V
Sbjct: 165 EV--------YRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGV 216
Query: 210 VGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLP 242
+G G++G +V L ++ VR + +P
Sbjct: 217 IGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVP 249
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 36/213 (16%)
Query: 37 VIVGAGPSGLATAACLK---ERG--IPSIL-LERSNCIASLWQL---------------K 75
I+GAGPSG+A + E+G IP ++ E+ W
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 76 TYDRLRLHLPKQFCELPLMGFPSEF----PTYPSKQQFVDYLEAYAKRFEIRP--RFNET 129
Y L + PK+ E F F +YP ++ DY++ ++ +R RFN
Sbjct: 66 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 130 VSQAEYDATIRFWRVKTTVGGQKCGV---EEMEYRCRWLVVATGENAEAVVPEIEGSDEF 186
V E++ + + V TV EE +Y +V TG + VPE EG ++F
Sbjct: 126 VRHVEFNEDSQTFTV--TVQDHTTDTIYSEEFDY----VVCCTGHFSTPYVPEFEGFEKF 179
Query: 187 GGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEV 219
GG I H ++ +F+ K VL+VG +S ++
Sbjct: 180 GGRILHAHDFRDALEFKDKTVLLVGSSSSAEDI 212
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 323 PGIKRLKRYAVEFVNGRCENFDAIILATGYRSNVP 357
P + R+ F +G E DAIIL TGY + P
Sbjct: 245 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFP 279
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 36/213 (16%)
Query: 37 VIVGAGPSGLATAACLK---ERG--IPSIL-LERSNCIASLWQL---------------K 75
I+GAGPSG+A + E+G IP ++ E+ W
Sbjct: 6 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 76 TYDRLRLHLPKQFCELPLMGFPSEF----PTYPSKQQFVDYLEAYAKRFEIRP--RFNET 129
Y L + PK+ E F F +YP ++ DY++ ++ +R RFN
Sbjct: 66 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 130 VSQAEYDATIRFWRVKTTVGGQKCGV---EEMEYRCRWLVVATGENAEAVVPEIEGSDEF 186
V E++ + + V TV EE +Y +V TG + VPE EG ++F
Sbjct: 126 VRHVEFNEDSQTFTV--TVQDHTTDTIYSEEFDY----VVCCTGHFSTPYVPEFEGFEKF 179
Query: 187 GGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEV 219
GG I H ++ +F+ K VL+VG S ++
Sbjct: 180 GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI 212
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 323 PGIKRLKRYAVEFVNGRCENFDAIILATGYRSNVP 357
P + R+ F +G E DAIIL TGY + P
Sbjct: 245 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFP 279
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 36/213 (16%)
Query: 37 VIVGAGPSGLATAACLK---ERG--IPSIL-LERSNCIASLWQL---------------K 75
I+GAGPSG A + E+G IP ++ E+ W
Sbjct: 6 AILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 65
Query: 76 TYDRLRLHLPKQFCELPLMGFPSEF----PTYPSKQQFVDYLEAYAKRFEIRP--RFNET 129
Y L + PK+ E F F +YP ++ DY++ ++ +R RFN
Sbjct: 66 XYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 125
Query: 130 VSQAEYDATIRFWRVKTTVGGQKCGV---EEMEYRCRWLVVATGENAEAVVPEIEGSDEF 186
V E++ + + V TV EE +Y +V TG + VPE EG ++F
Sbjct: 126 VRHVEFNEDSQTFTV--TVQDHTTDTIYSEEFDY----VVCCTGHFSTPYVPEFEGFEKF 179
Query: 187 GGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEV 219
GG I H ++ +F+ K VL+VG S ++
Sbjct: 180 GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI 212
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 323 PGIKRLKRYAVEFVNGRCENFDAIILATGYRSNVP 357
P + R+ F +G E DAIIL TGY + P
Sbjct: 245 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFP 279
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 32/211 (15%)
Query: 37 VIVGAGPSGLATAACLK---ERG--IPSIL-LERSNCIASLWQL---------------K 75
I+GAGPSG+A + E+G IP ++ E+ W
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 76 TYDRLRLHLPKQFCELPLMGFPSEF----PTYPSKQQFVDYLEAYAKRFEIRP--RFNET 129
Y L + PK+ E F F +YP ++ DY++ ++ +R RFN
Sbjct: 71 MYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 130 VSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC-RWLVVATGENAEAVVPEIEGSDEFGG 188
V E++ + TV Q + + ++V TG + VPE EG ++FGG
Sbjct: 131 VRHVEFNEDSQ----TFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGG 186
Query: 189 DIRHTSLYKSGEDFRGKRVLVVGCGNSGMEV 219
I H ++ +F+ K VL+VG S ++
Sbjct: 187 RILHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 323 PGIKRLKRYAVEFVNGRCENFDAIILATGYRSNVP 357
P + R+ F +G E DAIIL TGY + P
Sbjct: 250 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFP 284
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 32/211 (15%)
Query: 37 VIVGAGPSGLATAACLK---ERG--IPSIL-LERSNCIASLWQL---------------K 75
I+GAGPSG+A + E+G IP ++ E+ W
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 76 TYDRLRLHLPKQFCELPLMGFPSEF----PTYPSKQQFVDYLEAYAKRFEIRP--RFNET 129
Y L PK+ E F F +YP ++ DY++ ++ +R RFN
Sbjct: 71 MYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 130 VSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC-RWLVVATGENAEAVVPEIEGSDEFGG 188
V E++ + TV Q + + ++V TG + VPE EG ++FGG
Sbjct: 131 VRHVEFNEDSQ----TFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGG 186
Query: 189 DIRHTSLYKSGEDFRGKRVLVVGCGNSGMEV 219
I H ++ +F+ K VL+VG S ++
Sbjct: 187 RILHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 323 PGIKRLKRYAVEFVNGRCENFDAIILATGYRSNVP 357
P + R+ F +G E DAIIL TGY + P
Sbjct: 250 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFP 284
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 32/211 (15%)
Query: 37 VIVGAGPSGLATAACLK---ERG--IPSIL-LERSNCIASLWQL---------------K 75
I+GAGPSG+A + E+G IP ++ E+ W
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 76 TYDRLRLHLPKQFCELPLMGFPSEF----PTYPSKQQFVDYLEAYAKRFEIRP--RFNET 129
Y L PK+ E F F +YP ++ DY++ ++ +R RFN
Sbjct: 71 MYRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 130 VSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC-RWLVVATGENAEAVVPEIEGSDEFGG 188
V E++ + TV Q + + ++V TG + VPE EG ++FGG
Sbjct: 131 VRHVEFNEDSQ----TFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGG 186
Query: 189 DIRHTSLYKSGEDFRGKRVLVVGCGNSGMEV 219
I H ++ +F+ K VL+VG S ++
Sbjct: 187 RILHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 323 PGIKRLKRYAVEFVNGRCENFDAIILATGYRSNVP 357
P + R+ F +G E DAIIL TGY + P
Sbjct: 250 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFP 284
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 32/211 (15%)
Query: 37 VIVGAGPSGLATAACLK---ERG--IPSIL-LERSNCIASLWQL---------------K 75
I+GAGPSG+A + E+G IP ++ E+ W
Sbjct: 11 AILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSS 70
Query: 76 TYDRLRLHLPKQFCELPLMGFPSEF----PTYPSKQQFVDYLEAYAKRFEIRP--RFNET 129
Y L PK+ E F F +YP ++ DY++ ++ +R RFN
Sbjct: 71 MYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTA 130
Query: 130 VSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC-RWLVVATGENAEAVVPEIEGSDEFGG 188
V E++ + TV Q + + ++V TG + VPE EG ++FGG
Sbjct: 131 VRHVEFNEDSQ----TFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVPEFEGFEKFGG 186
Query: 189 DIRHTSLYKSGEDFRGKRVLVVGCGNSGMEV 219
I H ++ +F+ K VL+VG S ++
Sbjct: 187 RILHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 323 PGIKRLKRYAVEFVNGRCENFDAIILATGYRSNVP 357
P + R+ F +G E DAIIL TGY + P
Sbjct: 250 PNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFP 284
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 85/225 (37%), Gaps = 41/225 (18%)
Query: 38 IVGAGPSGLATA-ACLKERGIPSI-LLERSNCIASLWQLKTYDRLRLHLPKQ---FCELP 92
I+GAGPSGL TA A L E+ + L ER +W + +L +P P
Sbjct: 13 IIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEP 72
Query: 93 LMGFPSEFPTYPS------------------KQQFVDYLEAYAKRFEIR----------- 123
++G P+ P YPS Q F + R I+
Sbjct: 73 IVG-PAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL 131
Query: 124 PRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGS 183
P + + W V T G K G + + + G +P I+G
Sbjct: 132 PFIKLATDVLDIEKKDGSWVV--TYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGL 189
Query: 184 DEFG----GDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLC 224
DE+ G + H+SL++ E F G+ VLVVG +S ++ L
Sbjct: 190 DEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLT 234
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 85/225 (37%), Gaps = 41/225 (18%)
Query: 38 IVGAGPSGLATA-ACLKERGIPSI-LLERSNCIASLWQLKTYDRLRLHLPKQ---FCELP 92
I+GAGPSGL TA A L E+ + L ER +W + +L +P P
Sbjct: 11 IIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEP 70
Query: 93 LMGFPSEFPTYPS------------------KQQFVDYLEAYAKRFEIR----------- 123
++G P+ P YPS Q F + R I+
Sbjct: 71 IVG-PAALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLL 129
Query: 124 PRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGS 183
P + + W V T G K G + + + G +P I+G
Sbjct: 130 PFIKLATDVLDIEKKDGSWVV--TYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGL 187
Query: 184 DEFG----GDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLC 224
DE+ G + H+SL++ E F G+ VLVVG +S ++ L
Sbjct: 188 DEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLT 232
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 36/206 (17%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGF 96
I+G GP+G+ A I ++E S+ QL +L P++ + GF
Sbjct: 18 TIIGGGPTGIFAAFQCGMNNISCRIIE------SMPQLG--GQLAALYPEKHI-YDVAGF 68
Query: 97 PSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEY--DATIRFWRVKTTVGGQKCG 154
P E P V+ L A A+R+ NETV++ D T + +T G
Sbjct: 69 P-EVPAI----DLVESLWAQAERYNPDVVLNETVTKYTKLDDGT---FETRTNTGNV--- 117
Query: 155 VEEMEYRCRWLVVATGENA--EAVVPEIEGSDEFGGDIRHTSLY---KSGEDFRGKRVLV 209
YR R +++A G A +P++ D G +S+Y KS EDF+GKRV++
Sbjct: 118 -----YRSRAVLIAAGLGAFEPRKLPQLGNIDHLTG----SSVYYAVKSVEDFKGKRVVI 168
Query: 210 VGCGNSGMEVCLDLCNHDAMPSLVVR 235
VG G+S ++ + L + A +LV R
Sbjct: 169 VGGGDSALDWTVGLIKNAASVTLVHR 194
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 30/204 (14%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASL-WQLKTYDRLRLHLPKQFCELPLMG 95
VI+G GP+GL A + +++LE+ + W + +
Sbjct: 12 VIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVEN----------------- 54
Query: 96 FPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGV 155
FP FP + + + A++F + +E V ++DAT + TV G
Sbjct: 55 FPG-FPEPIAGMELAQRMHQQAEKFGAKVEMDE-VQGVQHDATSHPYPF--TVRGYNG-- 108
Query: 156 EEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNS 215
EYR + +++ATG + + I G D F G T G ++GK+V+V+G G++
Sbjct: 109 ---EYRAKAVILATGADPRKL--GIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDA 163
Query: 216 GMEVCLDLCNH-DAMPSLVVRDTV 238
+E + L D + + RDT+
Sbjct: 164 AVEEGMFLTKFADEVTVIHRRDTL 187
>pdb|3S5W|A Chain A, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S5W|B Chain B, Ornithine Hydroxylase (Pvda) From Pseudomonas Aeruginosa
pdb|3S61|A Chain A, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
pdb|3S61|B Chain B, Reduced Form Of Ornithine Hydroxylase (Pvda) From
Pseudomonas Aeruginosa
Length = 463
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 46/229 (20%)
Query: 39 VGAGPSGLATAACLKERGIPSILLE------------RSNCIASLWQLKTY---DRLRLH 83
VG GPS +A A L+ER LE N + S +L+ D + L
Sbjct: 36 VGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLR 95
Query: 84 LPK---QFCEL-----PLMGFPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAE- 134
P F L+ F + YP + +F DYL A F+ + R+ E V + E
Sbjct: 96 NPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEP 155
Query: 135 --YDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRH 192
+ RV + + EE+ R LVV+ G +P++ + + G + H
Sbjct: 156 MLSAGQVEALRVIS----RNADGEELVRTTRALVVSPGGTPR--IPQVFRALKGDGRVFH 209
Query: 193 TSLY---------KSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSL 232
S Y SG+ ++ ++G G S E +DL +D+ PS+
Sbjct: 210 HSQYLEHMAKQPCSSGKPM---KIAIIGGGQSAAEAFIDL--NDSYPSV 253
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 44/209 (21%)
Query: 37 VIVGAGPSGLATAACLKERGIP----SILLERSNCIASLWQLK-TYDRLRLHLPKQFCEL 91
+IVGAGP+GL + RG+ L E + +L+ K YD
Sbjct: 9 LIVGAGPTGLFAGFYVGXRGLSFRFVDPLPEPGGQLTALYPEKYIYD------------- 55
Query: 92 PLMGFPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIR----FWRVKTT 147
+ GFP + +K +E A FN S E T+ ++V T+
Sbjct: 56 -VAGFPKVY----AKDLVKGLVEQVAP-------FNPVYSLGERAETLEREGDLFKVTTS 103
Query: 148 VGGQKCGVEEMEYRCRWLVVATGENA-EAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKR 206
G Y + +++A G A E G EF G + ++ KS +F+GKR
Sbjct: 104 QGNA--------YTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAV-KSKAEFQGKR 154
Query: 207 VLVVGCGNSGMEVCLDLCNHDAMPSLVVR 235
VL+VG G+S ++ L+L + +L+ R
Sbjct: 155 VLIVGGGDSAVDWALNLLDTARRITLIHR 183
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 161 RCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVC 220
+ R +++ATG + + G D++ + G F+GKRV V+G GNSG+E
Sbjct: 314 KARSIIIATGAKWRNM--NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAA 371
Query: 221 LDLC 224
+DL
Sbjct: 372 IDLA 375
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 139 IRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKS 198
+ +K T GG + Y +++++ TG + + ++G E+ G
Sbjct: 92 VEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKHL--GVKGESEYFGKGTSYCSTCD 149
Query: 199 GEDFRGKRVLVVGCGNSGMEVCLDLCNH 226
G F+GKRV+ +G GNSG + + +
Sbjct: 150 GYLFKGKRVVTIGGGNSGAIAAISMSEY 177
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 161 RCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVC 220
+ R ++VATG + + G D++ + G F+GKRV V+G GNSG+E
Sbjct: 103 KARSIIVATGAKWRNM--NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAA 160
Query: 221 LDLC 224
+DL
Sbjct: 161 IDLA 164
>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|B Chain B, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|E Chain E, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|F Chain F, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 320
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 159 EYRCRWLVVATGENAEAV-VPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGM 217
EY C L++ATG +A + +P E F G S G +R ++V V+G GN+ +
Sbjct: 102 EYTCDALIIATGASARYLGLPSEEA---FKGRGVSASATCDGFFYRNQKVAVIGGGNTAV 158
Query: 218 EVCLDLCNHDAMPSLVVR 235
E L L N + L+ R
Sbjct: 159 EEALYLSNIASEVHLIHR 176
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFC 89
VIVGAGPSGL A LK+ G+ +LE + + T D L + Q+
Sbjct: 11 VIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWV 63
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFC 89
IVGAGPSGLA A L++ G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFC 89
IVGAGPSGLA A L++ G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFC 89
IVGAGPSGLA A L++ G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two
Structurally Divergent Enzymes
Length = 320
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 159 EYRCRWLVVATGENAEAV-VPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGM 217
EY C L++ATG +A + +P E F G G +R ++V V+G GN+ +
Sbjct: 102 EYTCDALIIATGASARYLGLPSEEA---FKGRGVSACATSDGFFYRNQKVAVIGGGNTAV 158
Query: 218 EVCLDLCNHDAMPSLVVR 235
E L L N + L+ R
Sbjct: 159 EEALYLSNIASEVHLIHR 176
>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 159 EYRCRWLVVATGENAEAV-VPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGM 217
EY C L++ATG +A + +P E F G G +R ++V V+G GN+ +
Sbjct: 102 EYTCDALIIATGASARYLGLPSEEA---FKGRGVSACATSDGFFYRNQKVAVIGGGNTAV 158
Query: 218 EVCLDLCNHDAMPSLVVR 235
E L L N + L+ R
Sbjct: 159 EEALYLSNIASEVHLIHR 176
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER+
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERTT 35
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKT 76
I+GAGPSGL L + GI +++LER L ++K
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIKA 45
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 38 IVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 7 IIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLE-------RSNCIASLWQLKTYDRLRLHLPKQFC 89
++VGAGPSGL A L RG +L E R ++L L + R++ +
Sbjct: 395 LVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLA 454
Query: 90 ELPLMGFPSEFP 101
ELP + E P
Sbjct: 455 ELPNVEIYRESP 466
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILERQT 35
>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin
Reductase Refined At 2 Angstrom Resolution: Implications
For A Large Conformational Change During Catalysis
Length = 316
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 159 EYRCRWLVVATGENAEAV-VPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGM 217
EY C L++ATG +A + +P E F G G +R ++V V+G GN+ +
Sbjct: 102 EYTCDALIIATGASARYLGLPSEEA---FKGRGVSACATCDGFFYRNQKVAVIGGGNTAV 158
Query: 218 EVCLDLCNHDAMPSLVVR 235
E L L N + L+ R
Sbjct: 159 EEALYLSNIASEVHLIHR 176
>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From
Escherichia Coli
Length = 320
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 159 EYRCRWLVVATGENAEAV-VPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGM 217
EY C L++ATG +A + +P E F G G +R ++V V+G GN+ +
Sbjct: 102 EYTCDALIIATGASARYLGLPSEEA---FKGRGVSACATCDGFFYRNQKVAVIGGGNTAV 158
Query: 218 EVCLDLCNHDAMPSLVVR 235
E L L N + L+ R
Sbjct: 159 EEALYLSNIASEVHLIHR 176
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLER 64
I+GAGPSGL L + GI +++LER
Sbjct: 6 AIIGAGPSGLLLGQLLHKAGIDNVILER 33
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 128 ETVSQAEYDATIRFWRVKTTVGGQ-KCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEF 186
+ V++A + + T V G+ K E+M+Y + + T E +AVV E+ E
Sbjct: 60 QKVAEAAKQKQVSPYDFTTAVAGEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQ 119
Query: 187 GGDI---RHTSLYK-SGEDFRGKRVLVVGCGNSG 216
GDI R+ Y S E F + + G G
Sbjct: 120 KGDIYLGRYEGWYSISDESFLTPQNITDGVDKDG 153
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 128 ETVSQAEYDATIRFWRVKTTVGGQ--KCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDE 185
+ V++A + + T V G+ KC E+M+Y + + T E +AVV E+ E
Sbjct: 60 QKVAEAAKQKQVSPYDFTTAVAGEFKKC-FEQMDYSIDYFIRTTNEQHKAVVKELWTKLE 118
Query: 186 FGGDI---RHTSLYK-SGEDFRGKRVLVVGCGNSG 216
GDI R+ Y S E F + + G G
Sbjct: 119 QKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDG 153
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 21/90 (23%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGF 96
++VG GPSGL+ A L G+ ++L+ ++K R+ + P E
Sbjct: 5 IVVGGGPSGLSAALFLARAGLKVLVLDGGRS-----KVKGVSRVP-NYPGLLDE------ 52
Query: 97 PSEFPTYPSKQQFVDYLEAYAKRF--EIRP 124
PS ++ + LEA+A+R+ E+RP
Sbjct: 53 -------PSGEELLRRLEAHARRYGAEVRP 75
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 128 ETVSQAEYDATIRFWRVKTTVGGQ--KCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDE 185
+ V++A + + T V G+ KC E+M+Y + + T E +AVV E+ E
Sbjct: 60 QKVAEAAKQKQVSPYDFTTAVAGEFKKC-FEQMDYSIDYFIRTTNEQHKAVVKELWTKLE 118
Query: 186 FGGDI---RHTSLYK-SGEDFRGKRVLVVGCGNSG 216
GDI R+ Y S E F + + G G
Sbjct: 119 QKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDG 153
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 34 PGPVIVGAGPSGLATAACLKERGIPSIL-LERSNCIASLWQLKTYDRLRLHLPKQFCE 90
P ++VGAG SG++ A L E GI +L LE ++ I + + + L + E
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVE 62
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 34 PGPVIVGAGPSGLATAACLKERGIPSIL-LERSNCIASLWQLKTYDRLRLHLPKQFCE 90
P ++VGAG SG++ A L E GI +L LE ++ I + + + L + E
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVE 62
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 24/186 (12%)
Query: 38 IVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFP 97
I+G GP GL TA R ++E SL QL +L P+++ + GFP
Sbjct: 12 IIGGGPVGLFTAFYGGMRQASVKIIE------SLPQLGG--QLSALYPEKYI-YDVAGFP 62
Query: 98 SEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEE 157
Q+ ++ L+ +F+ + V E A F V EE
Sbjct: 63 K-----IRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTN---------EE 108
Query: 158 MEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGM 217
Y ++ A + E+E ++++ G H + F G+RV ++G G+S +
Sbjct: 109 THYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILGGGDSAV 167
Query: 218 EVCLDL 223
+ L L
Sbjct: 168 DWALML 173
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+G GP GL A L++ GI + ER N
Sbjct: 10 AIIGGGPVGLTXAKLLQQNGIDVSVYERDN 39
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+G GP GL A L++ GI + ER N
Sbjct: 10 AIIGGGPVGLTMAKLLQQNGIDVSVYERDN 39
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 12 KQAHDPIFIEKMNKSSPRCICVPGPVIVGAGPSGLATAACLKERGIPSILLER-----SN 66
K+A P++ + ++ +C+ +VGAGP GL A L G +L+E+ +
Sbjct: 77 KRASQPVYQQGQACTNTKCL------VVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH 130
Query: 67 CIASLWQLKTYDRLRLHLPKQF 88
+ LW +D LR K+F
Sbjct: 131 NVLHLWPFTIHD-LRALGAKKF 151
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
Length = 398
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+G GP GL A L++ GI + ER N
Sbjct: 30 AIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+G GP GL A L++ GI + ER N
Sbjct: 31 AIIGGGPVGLTXAKLLQQNGIDVSVYERDN 60
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
Length = 398
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+G GP GL A L++ GI + ER N
Sbjct: 30 AIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERS 65
+VG G SGLA A L+ RG ++LLE S
Sbjct: 20 AVVGGGISGLAVAHHLRSRGTDAVLLESS 48
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
I+G GP GL A L++ GI + ER N
Sbjct: 30 AIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 12 KQAHDPIFIEKMNKSSPRCICVPGPVIVGAGPSGLATAACLKERGIPSILLER-----SN 66
K+A P++ + ++ +C+ +VGAGP GL A L G +L+E+ +
Sbjct: 69 KRASQPVYQQGQACTNTKCL------VVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH 122
Query: 67 CIASLWQLKTYD 78
+ LW +D
Sbjct: 123 NVLHLWPFTIHD 134
>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase
R229w Mutant
Length = 261
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 272 VVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVF-----PGIK 326
+ WL G TA FG RP P L +L G++ +D G + K G F +
Sbjct: 1 MTCWLR-GVTATFG--RPAEWPGYLSHLCGRSAAMDLGPMRKSYRGDREAFEETHLTSLD 57
Query: 327 RLKRYAVEFVNG-RCENF---DAIILATGYRSNVPS 358
+K++A F +C + +A+ LAT R PS
Sbjct: 58 PVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPS 93
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSN 66
++GAG GLA A L+ GIP +LLE+ +
Sbjct: 5 TVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLER 64
+IVGAGP G+ A L E G +LLER
Sbjct: 6 IIVGAGPGGIIAADRLSEAGKKVLLLER 33
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLER 64
+IVGAGP G+ A L E G +LLER
Sbjct: 11 IIVGAGPGGIIAADRLSEAGKKVLLLER 38
>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human
Pyridoxine-5'-Phosphate Oxidase
Length = 261
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 272 VVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVF-----PGIK 326
+ WL G TA FG RP P L +L G++ +D G + K G F +
Sbjct: 1 MTCWLR-GVTATFG--RPAEWPGYLSHLCGRSAAMDLGPMRKSYRGDREAFEETHLTSLD 57
Query: 327 RLKRYAVEFVNG-RCENF---DAIILATGYRSNVPS 358
+K++A F +C + +A+ LAT R PS
Sbjct: 58 PVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPS 93
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFC 89
IVGAG SGLA A L++ G+ ++E + + T D L + Q+
Sbjct: 9 AIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWV 61
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 360 LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRGLLGVAMDAKRIAQDIE---SCWK 416
L S + R D RR FP GW G+ + F+ GL +R AQD+ + W+
Sbjct: 456 LXTSTVKGRDDASYRRDFPGGWAGDK---ANAFSGAGL----TSQQRAAQDLVRKLANWR 508
Query: 417 AKAPFARSLLLPH 429
P + L H
Sbjct: 509 KNQPVIHNGRLXH 521
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSN 66
+ P VI+GAGP+GL A L E G + L N
Sbjct: 7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECN 42
>pdb|3EG4|A Chain A, Crystal Structure Of 2,3,4,5-Tetrahydropyridine-2-
Carboxylate N-Succinyltransferase From Brucella
Melitensis Biovar Abortus 2308
Length = 304
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 228 AMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLD 287
A+P+ +VR + ++ P +L S L + VDK ++ +W +G A+ G +
Sbjct: 132 AVPNCIVRHSAYIAPNAILMPSFVNLGAY---------VDKGAMIDTWATVGSCAQIGKN 182
Query: 288 RPLLG 292
L G
Sbjct: 183 VHLSG 187
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTY 77
VIVGAG SGL+ A L G +LE S Q+KTY
Sbjct: 50 VIVGAGMSGLSAAYVLANAGHQVTVLEASERAGG--QVKTY 88
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 360 LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRGLLGVAMDAKRIAQDIE---SCWK 416
L S + R D RR FP GW G+ + F+ GL +R AQD+ + W+
Sbjct: 456 LMTSTVKGRDDASYRRDFPGGWAGDK---ANAFSGAGL----TSQQRAAQDLVRKLANWR 508
Query: 417 AKAPFARSLLLPH 429
P + L H
Sbjct: 509 KNQPVIHNGRLMH 521
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 360 LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRGLLGVAMDAKRIAQDIE---SCWK 416
L S + R D RR FP GW G+ + F+ GL +R AQD+ + W+
Sbjct: 456 LMTSTVKGRDDASYRRDFPGGWAGDK---ANAFSGAGL----TSQQRAAQDLVRKLANWR 508
Query: 417 AKAPFARSLLLPH 429
P + L H
Sbjct: 509 KNQPVIHNGRLMH 521
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 360 LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRGLLGVAMDAKRIAQDIE---SCWK 416
L S + R D RR FP GW G+ + F+ GL +R AQD+ + W+
Sbjct: 456 LMTSTVKGRDDASYRRDFPGGWAGDK---ANAFSGAGL----TSQQRAAQDLVRKLANWR 508
Query: 417 AKAPFARSLLLPH 429
P + L H
Sbjct: 509 KNQPVIHNGRLMH 521
>pdb|1HIZ|A Chain A, Xylanase T6 (Xt6) From Bacillus Stearothermophilus
pdb|1R85|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6): The Wt Enzyme
(Monoclinic Form) At 1.45a Resolution
pdb|1R87|A Chain A, Crystal Structure Of The Extracellular Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic
Form): The Complex Of The Wt Enzyme With Xylopentaose At
1.67a Resolution
Length = 379
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 17/104 (16%)
Query: 52 LKERGIPSILLERSNCIASLWQL-----KTYDRLR-LHLPKQFCELPLMGF---PSEFPT 102
LKE G+P + + I W KT + L L Q EL + + P +PT
Sbjct: 221 LKEEGVPIDGIGHQSHIQIGWPSEAEIEKTINMFAALGLDNQITELDVSMYGWPPRAYPT 280
Query: 103 YPS--KQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRV 144
Y + KQ+F+D Y + F++ + ++ +S + FW +
Sbjct: 281 YDAIPKQKFLDQAARYDRLFKLYEKLSDKIS------NVTFWGI 318
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 127 NETVSQAEYDATIRFWRVKT-----TVGGQKCGVEEMEYRCRWLVVATGENA 173
++ + A D TI+ W T T+ G K G+ ++YR R +V + +N
Sbjct: 266 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 317
>pdb|3MMD|A Chain A, Crystal Structure Of The W241a Mutant Of Xylanase From
Geobacillus Stearothermophilus T-6 (Xt6) Complexed With
Hydrolyzed Xylopentaose
Length = 379
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 82 LHLPKQFCELPLMGF---PSEFPTYPS--KQQFVDYLEAYAKRFEIRPRFNETVSQAEYD 136
L L Q EL + + P +PTY + KQ+F+D Y + F++ + ++ +S
Sbjct: 257 LGLDNQITELDVSMYGWPPRAYPTYDAIPKQKFLDQAARYDRLFKLYEKLSDKIS----- 311
Query: 137 ATIRFWRV 144
+ FW +
Sbjct: 312 -NVTFWGI 318
>pdb|3IP1|A Chain A, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|B Chain B, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|C Chain C, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
pdb|3IP1|D Chain D, Structure Of Putative Alcohol Dehydrogenase (Tm_042) From
Thermotoga Maritima
Length = 404
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 6 LREIEGKQAHDPIF-----IEKMNKSSPRCICVPGP-------VIVGAGPSGLATAACLK 53
LRE+EG D +F +E + + I G VI+G GP GLA A LK
Sbjct: 175 LRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILK 234
Query: 54 ERGIPSILL 62
G ++L
Sbjct: 235 HAGASKVIL 243
>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2
pdb|2WHD|B Chain B, Barley Nadph-Dependent Thioredoxin Reductase 2
Length = 351
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 32/185 (17%)
Query: 38 IVGAGPSGLATAACLKERGIPSILLE--RSNCIASLWQLKTYDRLRLHLPKQFCELPLMG 95
I+G+GP+ A + +L E +N IA+ QL T +
Sbjct: 35 IIGSGPAAHTAAIYAARAELKPVLFEGWMANDIAAGGQLTTTTDVE-------------N 81
Query: 96 FPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGV 155
FP FPT +D A + RF +ETV++ ++ A R +RV +
Sbjct: 82 FPG-FPTGIMGIDLMDNCRAQSVRFGTNI-LSETVTEVDFSA--RPFRVTS--------- 128
Query: 156 EEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGED--FRGKRVLVVGCG 213
+ +VVATG A + GSD + G FR K + V+G G
Sbjct: 129 DSTTVLADTVVVATGAVARRLY--FSGSDTYWNRGISACAVCDGAAPIFRNKPIAVIGGG 186
Query: 214 NSGME 218
+S ME
Sbjct: 187 DSAME 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,890,349
Number of Sequences: 62578
Number of extensions: 609575
Number of successful extensions: 1898
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1747
Number of HSP's gapped (non-prelim): 145
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)