Query 013943
Match_columns 433
No_of_seqs 172 out of 1953
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 4.3E-44 9.3E-49 355.2 22.6 367 34-416 2-397 (531)
2 PLN02172 flavin-containing mon 100.0 1.5E-38 3.2E-43 312.0 30.5 313 29-416 6-353 (461)
3 COG0492 TrxB Thioredoxin reduc 100.0 4.8E-35 1E-39 269.9 27.7 287 32-418 2-303 (305)
4 COG2072 TrkA Predicted flavopr 100.0 1.1E-34 2.4E-39 283.6 31.4 353 32-396 7-389 (443)
5 TIGR01292 TRX_reduct thioredox 100.0 8.8E-35 1.9E-39 273.8 27.5 284 34-415 1-300 (300)
6 PRK10262 thioredoxin reductase 100.0 1.1E-33 2.3E-38 268.5 25.9 291 32-417 5-316 (321)
7 TIGR03140 AhpF alkyl hydropero 100.0 3.9E-33 8.5E-38 279.6 27.6 288 31-417 210-514 (515)
8 PRK15317 alkyl hydroperoxide r 100.0 6E-33 1.3E-37 278.7 29.0 288 32-418 210-514 (517)
9 KOG1399 Flavin-containing mono 100.0 4E-33 8.8E-38 268.2 24.8 309 32-415 5-333 (448)
10 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.5E-33 3.3E-38 272.4 21.7 303 32-413 3-334 (454)
11 TIGR03143 AhpF_homolog putativ 100.0 3.3E-32 7.1E-37 274.9 26.4 288 32-418 3-311 (555)
12 TIGR01421 gluta_reduc_1 glutat 100.0 1.6E-32 3.4E-37 271.0 23.0 297 33-413 2-327 (450)
13 PLN02507 glutathione reductase 100.0 1.6E-32 3.5E-37 273.4 23.0 306 31-414 23-363 (499)
14 PRK05249 soluble pyridine nucl 100.0 1.8E-32 3.9E-37 272.8 23.2 303 32-414 4-335 (461)
15 PRK13512 coenzyme A disulfide 100.0 1.2E-32 2.6E-37 271.4 20.0 285 33-413 1-311 (438)
16 TIGR01424 gluta_reduc_2 glutat 100.0 8.3E-32 1.8E-36 266.2 25.1 300 33-414 2-326 (446)
17 PRK06116 glutathione reductase 100.0 3E-32 6.4E-37 270.2 21.8 299 32-414 3-328 (450)
18 COG1252 Ndh NADH dehydrogenase 100.0 2.1E-32 4.6E-37 257.8 17.4 288 32-417 2-333 (405)
19 PRK06370 mercuric reductase; V 100.0 8.5E-32 1.8E-36 267.7 22.6 302 31-414 3-334 (463)
20 PRK08010 pyridine nucleotide-d 100.0 1E-31 2.2E-36 265.7 21.4 298 33-414 3-317 (441)
21 PTZ00318 NADH dehydrogenase-li 100.0 4.7E-32 1E-36 266.0 18.4 300 27-417 4-349 (424)
22 TIGR02053 MerA mercuric reduct 100.0 1.4E-31 2.9E-36 266.4 19.8 301 34-414 1-329 (463)
23 PRK06416 dihydrolipoamide dehy 100.0 5.1E-31 1.1E-35 262.4 22.9 302 32-413 3-333 (462)
24 PRK04965 NADH:flavorubredoxin 100.0 4.1E-31 9E-36 256.1 21.2 280 33-414 2-302 (377)
25 PRK12831 putative oxidoreducta 100.0 4.6E-31 1E-35 260.7 20.0 281 30-417 137-462 (464)
26 PRK06467 dihydrolipoamide dehy 100.0 9.3E-31 2E-35 259.9 22.3 305 31-414 2-337 (471)
27 PRK14989 nitrite reductase sub 100.0 3.2E-31 6.9E-36 276.4 19.8 285 34-414 4-310 (847)
28 TIGR01316 gltA glutamate synth 100.0 6.4E-31 1.4E-35 259.3 20.9 275 30-415 130-449 (449)
29 TIGR01423 trypano_reduc trypan 100.0 1.2E-30 2.6E-35 258.3 22.4 309 32-414 2-351 (486)
30 PLN02546 glutathione reductase 100.0 1.7E-31 3.7E-36 267.1 15.7 299 33-414 79-413 (558)
31 PRK06292 dihydrolipoamide dehy 100.0 2.3E-30 5.1E-35 257.6 23.4 300 32-414 2-331 (460)
32 PRK07818 dihydrolipoamide dehy 100.0 3.3E-30 7.1E-35 256.4 23.9 307 33-414 4-336 (466)
33 PRK09564 coenzyme A disulfide 100.0 1.5E-30 3.2E-35 258.1 21.3 289 35-414 2-317 (444)
34 PRK07845 flavoprotein disulfid 100.0 9E-30 2E-34 252.7 26.8 309 33-414 1-337 (466)
35 PRK07251 pyridine nucleotide-d 100.0 2.6E-30 5.6E-35 255.4 22.3 298 33-414 3-316 (438)
36 PRK14727 putative mercuric red 100.0 2.6E-30 5.6E-35 257.5 22.3 305 32-414 15-346 (479)
37 PTZ00052 thioredoxin reductase 100.0 1.8E-30 3.8E-35 259.1 20.6 305 33-414 5-341 (499)
38 PRK13748 putative mercuric red 100.0 3.2E-30 7E-35 262.8 22.9 302 33-413 98-427 (561)
39 PRK09754 phenylpropionate diox 100.0 1.1E-30 2.3E-35 254.7 17.6 283 33-414 3-309 (396)
40 PRK06115 dihydrolipoamide dehy 100.0 6.5E-30 1.4E-34 253.7 23.3 305 33-414 3-338 (466)
41 PRK07846 mycothione reductase; 100.0 2.3E-30 4.9E-35 255.5 19.3 295 34-414 2-325 (451)
42 PRK06327 dihydrolipoamide dehy 100.0 6.7E-30 1.4E-34 254.4 22.5 309 32-414 3-347 (475)
43 TIGR01350 lipoamide_DH dihydro 100.0 1.4E-29 2.9E-34 252.3 24.8 303 33-414 1-332 (461)
44 PTZ00058 glutathione reductase 100.0 1.7E-29 3.7E-34 252.6 25.0 304 32-414 47-432 (561)
45 PRK14694 putative mercuric red 100.0 1.1E-29 2.4E-34 252.5 23.2 305 31-414 4-335 (468)
46 PRK11749 dihydropyrimidine deh 100.0 5.1E-30 1.1E-34 254.2 20.6 278 30-417 137-453 (457)
47 PRK12779 putative bifunctional 100.0 9.1E-30 2E-34 267.9 23.0 278 32-418 305-629 (944)
48 PRK09853 putative selenate red 100.0 1.8E-29 4E-34 261.4 23.0 290 31-416 537-842 (1019)
49 TIGR02374 nitri_red_nirB nitri 100.0 3.9E-30 8.4E-35 268.7 17.9 280 36-414 1-301 (785)
50 PRK05976 dihydrolipoamide dehy 100.0 2.8E-29 6.1E-34 250.1 22.2 308 32-414 3-343 (472)
51 KOG0404 Thioredoxin reductase 100.0 2.2E-29 4.7E-34 211.1 16.6 285 33-416 8-319 (322)
52 TIGR01438 TGR thioredoxin and 100.0 2.9E-29 6.3E-34 249.2 20.6 304 33-414 2-344 (484)
53 PRK06912 acoL dihydrolipoamide 100.0 4E-29 8.8E-34 247.9 20.3 299 35-413 2-329 (458)
54 TIGR03169 Nterm_to_SelD pyridi 100.0 1.9E-29 4.1E-34 243.8 17.3 283 35-418 1-313 (364)
55 PRK12778 putative bifunctional 100.0 3.7E-29 8.1E-34 261.6 20.5 277 31-417 429-751 (752)
56 PRK12814 putative NADPH-depend 100.0 2.4E-28 5.1E-33 250.7 21.3 278 31-418 191-503 (652)
57 TIGR03315 Se_ygfK putative sel 100.0 3.3E-28 7.2E-33 253.4 22.3 290 31-416 535-840 (1012)
58 PRK12770 putative glutamate sy 100.0 6.2E-28 1.3E-32 231.5 22.0 287 32-416 17-350 (352)
59 TIGR03452 mycothione_red mycot 100.0 3.5E-28 7.5E-33 240.3 20.0 296 33-414 2-328 (452)
60 PF13738 Pyr_redox_3: Pyridine 100.0 7.6E-29 1.7E-33 219.7 13.8 189 37-239 1-202 (203)
61 PRK12810 gltD glutamate syntha 100.0 4.7E-28 1E-32 240.6 20.0 287 32-418 142-467 (471)
62 PTZ00153 lipoamide dehydrogena 100.0 2E-28 4.3E-33 248.0 17.3 307 33-414 116-495 (659)
63 KOG0405 Pyridine nucleotide-di 100.0 1E-27 2.3E-32 213.6 19.3 311 31-419 18-355 (478)
64 PRK12775 putative trifunctiona 100.0 1.1E-27 2.4E-32 254.4 23.2 280 32-419 429-758 (1006)
65 PRK12769 putative oxidoreducta 100.0 2E-27 4.3E-32 245.0 22.1 278 32-417 326-653 (654)
66 TIGR01318 gltD_gamma_fam gluta 100.0 1E-26 2.3E-31 230.1 23.2 275 32-416 140-466 (467)
67 COG3634 AhpF Alkyl hydroperoxi 99.9 1.3E-26 2.8E-31 206.7 17.2 290 32-417 210-516 (520)
68 PRK12809 putative oxidoreducta 99.9 3.2E-26 7E-31 234.9 21.8 278 32-417 309-636 (639)
69 KOG1335 Dihydrolipoamide dehyd 99.9 1.1E-25 2.3E-30 203.3 17.1 312 31-413 37-376 (506)
70 PF13434 K_oxygenase: L-lysine 99.9 5.5E-26 1.2E-30 214.6 15.7 207 33-248 2-235 (341)
71 KOG1336 Monodehydroascorbate/f 99.9 8.7E-26 1.9E-30 211.1 16.3 265 32-396 73-352 (478)
72 TIGR01317 GOGAT_sm_gam glutama 99.9 3.2E-25 6.9E-30 220.4 21.2 309 32-417 142-480 (485)
73 PRK13984 putative oxidoreducta 99.9 9.2E-26 2E-30 231.3 17.9 275 31-417 281-603 (604)
74 TIGR03385 CoA_CoA_reduc CoA-di 99.9 1.6E-25 3.4E-30 220.8 17.3 273 47-414 1-304 (427)
75 PLN02852 ferredoxin-NADP+ redu 99.9 2.2E-24 4.7E-29 211.2 23.6 326 30-417 23-423 (491)
76 PRK12771 putative glutamate sy 99.9 5.6E-25 1.2E-29 223.4 18.8 277 31-418 135-446 (564)
77 KOG2495 NADH-dehydrogenase (ub 99.9 8E-25 1.7E-29 200.9 15.4 300 28-416 50-397 (491)
78 COG3486 IucD Lysine/ornithine 99.9 2.6E-23 5.6E-28 190.8 23.4 351 31-422 3-421 (436)
79 COG1251 NirB NAD(P)H-nitrite r 99.9 1.6E-24 3.4E-29 211.8 14.8 287 34-417 4-309 (793)
80 TIGR01372 soxA sarcosine oxida 99.9 2.1E-23 4.5E-28 223.2 24.9 286 32-417 162-473 (985)
81 KOG4716 Thioredoxin reductase 99.9 3.2E-23 6.9E-28 184.4 17.9 314 32-416 18-367 (503)
82 KOG0399 Glutamate synthase [Am 99.9 2.5E-21 5.4E-26 194.1 14.7 325 19-416 1770-2120(2142)
83 COG0493 GltD NADPH-dependent g 99.8 1.1E-19 2.3E-24 176.5 11.7 295 34-414 124-449 (457)
84 COG0446 HcaD Uncharacterized N 99.8 7E-18 1.5E-22 166.1 16.1 277 36-413 1-309 (415)
85 PRK06567 putative bifunctional 99.8 2.1E-17 4.6E-22 170.0 18.6 170 29-225 379-571 (1028)
86 PTZ00188 adrenodoxin reductase 99.7 2E-16 4.3E-21 152.8 21.3 162 32-237 38-251 (506)
87 KOG1800 Ferredoxin/adrenodoxin 99.7 1.9E-16 4.1E-21 143.8 18.7 148 33-225 20-180 (468)
88 COG4529 Uncharacterized protei 99.7 2.1E-15 4.5E-20 143.0 25.8 194 33-237 1-231 (474)
89 KOG1346 Programmed cell death 99.7 2.2E-17 4.8E-22 151.1 9.8 296 33-414 178-519 (659)
90 PRK09897 hypothetical protein; 99.7 1.8E-14 3.9E-19 143.2 23.8 189 33-238 1-246 (534)
91 PF07992 Pyr_redox_2: Pyridine 99.6 9.8E-17 2.1E-21 141.7 4.6 123 35-183 1-130 (201)
92 COG1148 HdrA Heterodisulfide r 99.6 5.6E-14 1.2E-18 131.6 18.9 40 34-73 125-164 (622)
93 KOG2755 Oxidoreductase [Genera 99.6 2.7E-14 5.9E-19 123.6 11.6 298 36-396 2-322 (334)
94 COG2081 Predicted flavoprotein 99.5 1.1E-13 2.3E-18 128.3 11.2 135 32-176 2-170 (408)
95 PF03486 HI0933_like: HI0933-l 99.4 2.2E-12 4.7E-17 124.7 10.5 134 34-176 1-169 (409)
96 KOG3851 Sulfide:quinone oxidor 99.3 2.8E-11 6E-16 108.1 12.8 82 339-423 281-368 (446)
97 TIGR02032 GG-red-SF geranylger 99.3 4.6E-11 1E-15 111.9 12.6 131 34-173 1-148 (295)
98 TIGR02023 BchP-ChlP geranylger 99.3 1.2E-10 2.6E-15 113.6 15.0 137 34-173 1-155 (388)
99 PRK05329 anaerobic glycerol-3- 99.2 1.4E-10 3E-15 112.6 14.7 34 33-66 2-35 (422)
100 PF13454 NAD_binding_9: FAD-NA 99.2 1.5E-10 3.2E-15 97.5 12.9 125 37-171 1-155 (156)
101 PRK06847 hypothetical protein; 99.2 3.1E-10 6.6E-15 110.3 16.4 134 32-175 3-165 (375)
102 PRK10157 putative oxidoreducta 99.2 2.6E-10 5.7E-15 112.3 15.3 131 32-172 4-163 (428)
103 PRK04176 ribulose-1,5-biphosph 99.2 2.2E-10 4.7E-15 104.4 13.6 141 33-173 25-173 (257)
104 TIGR00292 thiazole biosynthesi 99.2 2.4E-10 5.3E-15 103.7 13.4 140 33-172 21-169 (254)
105 PLN02463 lycopene beta cyclase 99.2 1.9E-10 4.2E-15 112.9 13.1 132 30-173 25-169 (447)
106 PRK08013 oxidoreductase; Provi 99.2 3.1E-10 6.7E-15 111.2 13.8 132 33-174 3-169 (400)
107 COG3380 Predicted NAD/FAD-depe 99.2 1.6E-10 3.5E-15 101.1 9.9 125 33-171 1-158 (331)
108 PRK07333 2-octaprenyl-6-methox 99.2 4.5E-10 9.8E-15 110.2 14.0 131 33-173 1-167 (403)
109 PRK06183 mhpA 3-(3-hydroxyphen 99.2 1.3E-09 2.9E-14 110.7 17.8 137 31-174 8-175 (538)
110 PRK08244 hypothetical protein; 99.1 8E-10 1.7E-14 111.2 15.4 134 33-173 2-159 (493)
111 PRK08773 2-octaprenyl-3-methyl 99.1 6.8E-10 1.5E-14 108.5 14.3 132 32-173 5-169 (392)
112 PRK07364 2-octaprenyl-6-methox 99.1 4.1E-10 9E-15 111.0 12.9 136 32-174 17-182 (415)
113 PRK06834 hypothetical protein; 99.1 9.9E-10 2.1E-14 109.8 15.6 131 33-173 3-156 (488)
114 COG0644 FixC Dehydrogenases (f 99.1 5.6E-10 1.2E-14 109.0 13.1 131 32-171 2-150 (396)
115 COG0654 UbiH 2-polyprenyl-6-me 99.1 7.9E-10 1.7E-14 107.7 14.0 131 33-173 2-162 (387)
116 COG1635 THI4 Ribulose 1,5-bisp 99.1 4.7E-10 1E-14 95.4 10.6 136 33-171 30-176 (262)
117 PRK10015 oxidoreductase; Provi 99.1 1.6E-09 3.4E-14 106.8 15.9 131 32-172 4-163 (429)
118 PF01494 FAD_binding_3: FAD bi 99.1 3.1E-10 6.6E-15 109.2 10.3 134 34-173 2-172 (356)
119 PRK06184 hypothetical protein; 99.1 1.6E-09 3.6E-14 109.2 15.8 135 32-173 2-168 (502)
120 PRK05714 2-octaprenyl-3-methyl 99.1 6.1E-10 1.3E-14 109.4 11.9 132 33-174 2-169 (405)
121 TIGR01790 carotene-cycl lycope 99.1 1.3E-09 2.9E-14 106.4 14.2 129 35-173 1-141 (388)
122 PLN00093 geranylgeranyl diphos 99.1 1.2E-09 2.5E-14 107.9 13.2 142 31-173 37-199 (450)
123 PRK06617 2-octaprenyl-6-methox 99.1 1.4E-09 3E-14 105.6 13.4 131 33-175 1-162 (374)
124 PRK11445 putative oxidoreducta 99.1 2.4E-09 5.1E-14 102.9 14.8 133 33-174 1-158 (351)
125 PRK07190 hypothetical protein; 99.1 2.9E-09 6.2E-14 106.4 15.6 131 33-173 5-165 (487)
126 PLN02697 lycopene epsilon cycl 99.1 2.7E-09 5.8E-14 106.6 15.2 131 31-173 106-248 (529)
127 PF05834 Lycopene_cycl: Lycope 99.1 2.3E-09 4.9E-14 103.8 14.1 121 35-171 1-140 (374)
128 PRK07494 2-octaprenyl-6-methox 99.1 1.6E-09 3.4E-14 105.8 13.2 131 33-173 7-167 (388)
129 PRK07045 putative monooxygenas 99.1 2.6E-09 5.7E-14 104.2 14.7 134 32-173 4-165 (388)
130 PRK08020 ubiF 2-octaprenyl-3-m 99.1 1.6E-09 3.4E-14 106.0 12.6 133 32-174 4-170 (391)
131 PRK08850 2-octaprenyl-6-methox 99.0 3E-09 6.4E-14 104.5 13.7 131 33-173 4-168 (405)
132 PF01946 Thi4: Thi4 family; PD 99.0 7.4E-10 1.6E-14 94.9 8.1 141 32-172 16-164 (230)
133 PRK08849 2-octaprenyl-3-methyl 99.0 3.5E-09 7.6E-14 103.2 14.0 133 33-175 3-169 (384)
134 PRK05868 hypothetical protein; 99.0 4.8E-09 1E-13 101.6 14.8 132 33-175 1-162 (372)
135 TIGR01988 Ubi-OHases Ubiquinon 99.0 1.9E-09 4.2E-14 105.1 12.0 129 35-173 1-163 (385)
136 PRK06753 hypothetical protein; 99.0 3.2E-09 7E-14 103.1 13.5 126 35-173 2-152 (373)
137 PRK09126 hypothetical protein; 99.0 3.7E-09 8E-14 103.4 13.8 131 33-173 3-167 (392)
138 PRK08163 salicylate hydroxylas 99.0 2E-09 4.4E-14 105.4 11.7 133 33-175 4-168 (396)
139 TIGR01989 COQ6 Ubiquinone bios 99.0 2.8E-09 6.1E-14 105.6 12.7 134 34-175 1-185 (437)
140 PRK07608 ubiquinone biosynthes 99.0 4.4E-09 9.6E-14 102.7 13.9 131 33-174 5-168 (388)
141 TIGR01984 UbiH 2-polyprenyl-6- 99.0 3E-09 6.5E-14 103.7 12.0 129 35-173 1-162 (382)
142 PRK06185 hypothetical protein; 99.0 5.5E-09 1.2E-13 102.7 13.9 134 32-173 5-169 (407)
143 PRK07588 hypothetical protein; 99.0 4.7E-09 1E-13 102.6 13.2 132 34-176 1-161 (391)
144 PRK05732 2-octaprenyl-6-methox 99.0 4.6E-09 1E-13 102.8 13.0 132 32-173 2-169 (395)
145 PRK08132 FAD-dependent oxidore 99.0 9.3E-09 2E-13 104.9 15.6 135 32-173 22-185 (547)
146 TIGR02028 ChlP geranylgeranyl 99.0 8.5E-09 1.9E-13 100.7 14.6 139 34-173 1-160 (398)
147 PRK08243 4-hydroxybenzoate 3-m 99.0 9.2E-09 2E-13 100.5 14.4 133 33-175 2-165 (392)
148 KOG2820 FAD-dependent oxidored 99.0 5.2E-09 1.1E-13 94.6 11.4 143 29-179 3-218 (399)
149 PRK06996 hypothetical protein; 99.0 7.7E-09 1.7E-13 101.2 13.7 133 32-171 10-172 (398)
150 PF01266 DAO: FAD dependent ox 99.0 3.3E-09 7.1E-14 102.1 10.1 60 104-174 144-204 (358)
151 PRK07236 hypothetical protein; 98.9 1.3E-08 2.9E-13 99.2 13.6 132 32-175 5-156 (386)
152 TIGR00275 flavoprotein, HI0933 98.9 1E-08 2.2E-13 100.1 12.8 128 37-175 1-162 (400)
153 PRK06126 hypothetical protein; 98.9 3E-08 6.6E-13 101.2 16.6 136 33-173 7-188 (545)
154 PRK07538 hypothetical protein; 98.9 7.8E-08 1.7E-12 94.7 18.7 134 35-174 2-166 (413)
155 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 2.3E-08 4.9E-13 97.6 13.9 131 33-174 2-164 (390)
156 PF00070 Pyr_redox: Pyridine n 98.9 2.5E-08 5.4E-13 73.7 10.2 80 35-149 1-80 (80)
157 PRK05192 tRNA uridine 5-carbox 98.9 1.6E-08 3.6E-13 101.2 12.1 131 32-172 3-156 (618)
158 PRK11259 solA N-methyltryptoph 98.9 3.4E-08 7.4E-13 96.0 13.9 65 103-178 145-209 (376)
159 TIGR01813 flavo_cyto_c flavocy 98.9 7.3E-08 1.6E-12 95.7 16.1 135 35-174 1-193 (439)
160 PRK06475 salicylate hydroxylas 98.9 3.2E-08 6.9E-13 97.0 13.3 135 34-175 3-169 (400)
161 PF12831 FAD_oxidored: FAD dep 98.8 1.7E-09 3.7E-14 106.5 3.8 131 35-171 1-148 (428)
162 PLN02661 Putative thiazole syn 98.8 2.4E-08 5.3E-13 93.3 10.8 136 34-171 93-242 (357)
163 COG0029 NadB Aspartate oxidase 98.8 3.2E-08 7E-13 94.5 11.6 133 35-173 9-196 (518)
164 TIGR03219 salicylate_mono sali 98.8 3.7E-08 7.9E-13 97.1 12.6 128 35-174 2-160 (414)
165 PRK08294 phenol 2-monooxygenas 98.8 1E-07 2.2E-12 98.3 16.0 143 32-174 31-211 (634)
166 COG0579 Predicted dehydrogenas 98.8 3.9E-08 8.5E-13 94.5 12.1 64 104-175 150-213 (429)
167 TIGR01377 soxA_mon sarcosine o 98.8 7.7E-08 1.7E-12 93.7 14.3 61 104-175 142-202 (380)
168 PRK11728 hydroxyglutarate oxid 98.8 8.1E-08 1.8E-12 93.9 14.2 59 104-173 146-204 (393)
169 TIGR01789 lycopene_cycl lycope 98.8 4.5E-08 9.8E-13 94.4 11.9 121 35-172 1-137 (370)
170 PRK13369 glycerol-3-phosphate 98.8 1.2E-07 2.5E-12 95.6 15.3 65 105-175 153-217 (502)
171 PLN02985 squalene monooxygenas 98.8 1.5E-07 3.3E-12 94.5 15.3 138 31-174 41-209 (514)
172 PRK06481 fumarate reductase fl 98.8 2.3E-07 5E-12 93.4 16.6 138 32-174 60-252 (506)
173 PF13450 NAD_binding_8: NAD(P) 98.8 1.5E-08 3.3E-13 71.9 5.5 50 38-87 1-50 (68)
174 PRK12409 D-amino acid dehydrog 98.8 1.8E-07 3.8E-12 92.1 14.9 65 105-174 195-259 (410)
175 PRK13800 putative oxidoreducta 98.8 4.8E-08 1E-12 104.8 11.5 35 33-67 13-47 (897)
176 COG2509 Uncharacterized FAD-de 98.7 9.4E-07 2E-11 83.7 18.2 60 105-173 171-230 (486)
177 PF01134 GIDA: Glucose inhibit 98.7 4E-08 8.7E-13 93.3 9.1 127 35-171 1-150 (392)
178 PRK08274 tricarballylate dehyd 98.7 2.8E-07 6.1E-12 92.2 15.5 137 32-173 3-192 (466)
179 KOG2415 Electron transfer flav 98.7 3.3E-07 7.1E-12 85.3 13.6 144 30-173 73-256 (621)
180 PRK12266 glpD glycerol-3-phosp 98.7 4E-07 8.8E-12 91.7 15.3 65 106-175 154-218 (508)
181 PF00890 FAD_binding_2: FAD bi 98.7 2.5E-07 5.4E-12 91.3 13.6 136 35-174 1-204 (417)
182 PTZ00383 malate:quinone oxidor 98.7 1.1E-07 2.4E-12 94.6 11.0 61 104-174 208-274 (497)
183 PRK01747 mnmC bifunctional tRN 98.7 2.9E-07 6.2E-12 96.0 14.2 62 103-175 404-465 (662)
184 PRK08401 L-aspartate oxidase; 98.7 2.7E-07 5.8E-12 92.0 12.9 132 33-175 1-177 (466)
185 PRK04965 NADH:flavorubredoxin 98.7 2.6E-07 5.7E-12 89.8 12.4 99 34-176 142-240 (377)
186 TIGR03364 HpnW_proposed FAD de 98.7 3.2E-07 7E-12 88.8 12.9 34 34-67 1-34 (365)
187 TIGR03329 Phn_aa_oxid putative 98.6 3E-07 6.6E-12 91.7 12.8 63 104-178 180-242 (460)
188 TIGR00136 gidA glucose-inhibit 98.6 5E-07 1.1E-11 90.6 13.9 131 34-173 1-154 (617)
189 PRK07121 hypothetical protein; 98.6 9.8E-07 2.1E-11 88.9 16.2 63 106-173 176-239 (492)
190 PLN02927 antheraxanthin epoxid 98.6 6.6E-07 1.4E-11 91.3 14.6 131 31-174 79-249 (668)
191 PRK05976 dihydrolipoamide dehy 98.6 7.5E-07 1.6E-11 89.2 14.7 104 34-178 181-284 (472)
192 COG1249 Lpd Pyruvate/2-oxoglut 98.6 6E-07 1.3E-11 87.9 13.5 104 34-180 174-277 (454)
193 PRK12839 hypothetical protein; 98.6 1.8E-06 3.8E-11 88.1 16.9 43 29-71 4-46 (572)
194 PRK13339 malate:quinone oxidor 98.6 6.6E-07 1.4E-11 88.8 13.4 66 105-174 182-248 (497)
195 TIGR01373 soxB sarcosine oxida 98.6 7.7E-07 1.7E-11 87.5 13.9 61 104-173 180-240 (407)
196 PRK09754 phenylpropionate diox 98.6 4E-07 8.6E-12 89.1 11.8 98 34-176 145-242 (396)
197 PRK07804 L-aspartate oxidase; 98.6 1.1E-06 2.4E-11 89.2 15.1 143 32-174 15-211 (541)
198 PF00070 Pyr_redox: Pyridine n 98.6 6.8E-08 1.5E-12 71.3 4.7 36 206-242 1-36 (80)
199 PRK06416 dihydrolipoamide dehy 98.6 1.1E-06 2.3E-11 88.0 14.3 103 34-178 173-275 (462)
200 PRK07251 pyridine nucleotide-d 98.6 8.7E-07 1.9E-11 87.9 13.5 99 34-178 158-256 (438)
201 PRK11101 glpA sn-glycerol-3-ph 98.6 8.3E-07 1.8E-11 90.2 13.6 66 104-173 146-211 (546)
202 PRK13977 myosin-cross-reactive 98.6 3.2E-06 7E-11 84.2 17.0 43 30-72 19-65 (576)
203 PRK06327 dihydrolipoamide dehy 98.6 1.3E-06 2.8E-11 87.5 14.5 104 34-178 184-287 (475)
204 PTZ00367 squalene epoxidase; P 98.5 8.6E-07 1.9E-11 89.7 12.9 35 32-66 32-66 (567)
205 PTZ00139 Succinate dehydrogena 98.5 1.8E-06 3.9E-11 88.9 15.4 140 33-175 29-231 (617)
206 TIGR01350 lipoamide_DH dihydro 98.5 1.2E-06 2.6E-11 87.6 13.6 102 34-178 171-272 (461)
207 PLN00128 Succinate dehydrogena 98.5 2.1E-06 4.6E-11 88.4 15.5 141 33-176 50-253 (635)
208 PRK07573 sdhA succinate dehydr 98.5 2.2E-06 4.7E-11 88.6 15.6 37 32-68 34-70 (640)
209 PRK06912 acoL dihydrolipoamide 98.5 1.6E-06 3.5E-11 86.5 14.2 101 34-178 171-271 (458)
210 PRK06854 adenylylsulfate reduc 98.5 1.7E-06 3.8E-11 88.9 14.7 138 33-174 11-196 (608)
211 PRK08275 putative oxidoreducta 98.5 1.2E-06 2.5E-11 89.4 13.0 139 33-174 9-201 (554)
212 PRK06116 glutathione reductase 98.5 1.4E-06 3E-11 86.9 13.2 101 34-178 168-268 (450)
213 PRK05249 soluble pyridine nucl 98.5 1.3E-06 2.9E-11 87.2 13.2 100 34-178 176-275 (461)
214 PRK07057 sdhA succinate dehydr 98.5 3.5E-06 7.6E-11 86.4 16.3 140 33-175 12-213 (591)
215 PRK06263 sdhA succinate dehydr 98.5 2.4E-06 5.1E-11 87.0 14.9 137 33-174 7-198 (543)
216 PRK08958 sdhA succinate dehydr 98.5 1.2E-06 2.7E-11 89.6 12.9 139 33-174 7-207 (588)
217 PRK06175 L-aspartate oxidase; 98.5 2E-06 4.3E-11 84.9 13.9 133 33-173 4-189 (433)
218 COG1252 Ndh NADH dehydrogenase 98.5 1.2E-06 2.7E-11 83.7 11.9 102 32-179 154-268 (405)
219 PRK09078 sdhA succinate dehydr 98.5 1.5E-06 3.2E-11 89.3 13.3 140 33-175 12-214 (598)
220 PRK05945 sdhA succinate dehydr 98.5 2.4E-06 5.2E-11 87.5 14.5 135 33-174 3-198 (575)
221 TIGR01320 mal_quin_oxido malat 98.5 1.7E-06 3.7E-11 86.3 13.0 67 104-174 175-241 (483)
222 PRK06370 mercuric reductase; V 98.5 1.8E-06 3.8E-11 86.4 13.2 103 34-178 172-274 (463)
223 TIGR02053 MerA mercuric reduct 98.5 2.4E-06 5.2E-11 85.4 14.1 103 34-178 167-269 (463)
224 TIGR01812 sdhA_frdA_Gneg succi 98.5 3.2E-06 6.9E-11 86.7 15.0 136 35-174 1-192 (566)
225 PF04820 Trp_halogenase: Trypt 98.5 3.8E-07 8.2E-12 90.3 7.8 59 104-171 151-209 (454)
226 PLN02464 glycerol-3-phosphate 98.5 3.7E-06 8E-11 86.6 15.3 67 104-173 229-296 (627)
227 PRK07818 dihydrolipoamide dehy 98.5 3E-06 6.5E-11 84.7 14.2 104 34-178 173-276 (466)
228 TIGR00551 nadB L-aspartate oxi 98.5 2.8E-06 6.1E-11 85.3 13.8 135 33-174 2-190 (488)
229 PRK00711 D-amino acid dehydrog 98.4 2.6E-06 5.7E-11 84.0 13.4 61 105-175 199-259 (416)
230 PRK12835 3-ketosteroid-delta-1 98.4 7.1E-06 1.5E-10 84.0 16.7 40 31-70 9-48 (584)
231 KOG2614 Kynurenine 3-monooxyge 98.4 5.1E-07 1.1E-11 84.6 7.5 38 33-70 2-39 (420)
232 PRK06452 sdhA succinate dehydr 98.4 4.3E-06 9.4E-11 85.3 15.0 137 33-173 5-198 (566)
233 PRK07803 sdhA succinate dehydr 98.4 3.7E-06 7.9E-11 86.8 14.6 37 33-69 8-44 (626)
234 TIGR01424 gluta_reduc_2 glutat 98.4 2.5E-06 5.5E-11 84.8 12.9 100 34-178 167-266 (446)
235 COG1233 Phytoene dehydrogenase 98.4 3.1E-07 6.7E-12 92.0 6.3 54 32-85 2-55 (487)
236 PRK07845 flavoprotein disulfid 98.4 2.9E-06 6.3E-11 84.7 13.2 100 34-178 178-277 (466)
237 PRK07395 L-aspartate oxidase; 98.4 2.9E-06 6.2E-11 86.2 13.1 143 26-174 2-198 (553)
238 PRK12842 putative succinate de 98.4 4.7E-06 1E-10 85.4 14.8 38 33-70 9-46 (574)
239 PRK06134 putative FAD-binding 98.4 1.1E-05 2.4E-10 82.8 17.4 41 30-70 9-49 (581)
240 PRK08205 sdhA succinate dehydr 98.4 6.3E-06 1.4E-10 84.5 15.4 67 105-174 138-207 (583)
241 TIGR01421 gluta_reduc_1 glutat 98.4 4E-06 8.7E-11 83.3 13.6 102 34-178 167-268 (450)
242 PLN02507 glutathione reductase 98.4 3.6E-06 7.8E-11 84.6 13.2 100 34-178 204-303 (499)
243 TIGR03385 CoA_CoA_reduc CoA-di 98.4 2.8E-06 6.1E-11 84.0 12.2 99 34-178 138-236 (427)
244 PRK07846 mycothione reductase; 98.4 3.3E-06 7.1E-11 83.9 12.5 100 34-179 167-266 (451)
245 PRK08071 L-aspartate oxidase; 98.4 2.9E-06 6.3E-11 85.5 12.3 135 33-174 3-191 (510)
246 PRK09564 coenzyme A disulfide 98.4 2.9E-06 6.3E-11 84.4 12.1 100 33-177 149-248 (444)
247 PRK08641 sdhA succinate dehydr 98.4 1.1E-05 2.5E-10 82.6 16.6 37 33-69 3-39 (589)
248 COG2081 Predicted flavoprotein 98.4 1.4E-06 3E-11 81.6 8.9 148 205-353 4-166 (408)
249 PRK06467 dihydrolipoamide dehy 98.4 5E-06 1.1E-10 83.2 13.6 103 34-178 175-277 (471)
250 COG0665 DadA Glycine/D-amino a 98.4 2.4E-06 5.3E-11 83.3 11.0 60 104-174 153-213 (387)
251 PRK14989 nitrite reductase sub 98.4 2.8E-06 6E-11 90.1 12.0 102 34-177 146-247 (847)
252 PRK06115 dihydrolipoamide dehy 98.4 5.5E-06 1.2E-10 82.8 13.5 105 34-178 175-279 (466)
253 PRK14694 putative mercuric red 98.4 4.8E-06 1E-10 83.3 13.1 98 34-178 179-276 (468)
254 COG1232 HemY Protoporphyrinoge 98.4 4.2E-06 9.1E-11 81.3 12.0 40 35-74 2-43 (444)
255 PRK12845 3-ketosteroid-delta-1 98.4 1.5E-05 3.3E-10 81.1 16.6 39 31-70 14-52 (564)
256 COG0578 GlpA Glycerol-3-phosph 98.4 8.9E-06 1.9E-10 80.2 14.2 63 107-174 164-226 (532)
257 PRK06069 sdhA succinate dehydr 98.4 7.3E-06 1.6E-10 84.0 14.3 38 33-70 5-45 (577)
258 PRK08010 pyridine nucleotide-d 98.4 5.3E-06 1.2E-10 82.4 12.9 99 34-178 159-257 (441)
259 PLN02815 L-aspartate oxidase 98.3 8.5E-06 1.8E-10 83.2 14.4 140 31-174 27-223 (594)
260 PRK13512 coenzyme A disulfide 98.3 3.1E-06 6.8E-11 83.9 10.9 96 34-178 149-244 (438)
261 PRK05257 malate:quinone oxidor 98.3 3.7E-06 8E-11 84.0 11.4 65 106-174 182-247 (494)
262 PRK14727 putative mercuric red 98.3 6.6E-06 1.4E-10 82.5 13.2 98 34-178 189-286 (479)
263 PRK07208 hypothetical protein; 98.3 9.5E-07 2.1E-11 88.8 7.0 49 31-79 2-50 (479)
264 PRK08255 salicylyl-CoA 5-hydro 98.3 1.6E-06 3.4E-11 91.7 8.8 118 35-174 2-142 (765)
265 TIGR03452 mycothione_red mycot 98.3 7E-06 1.5E-10 81.6 12.8 99 34-178 170-268 (452)
266 PTZ00058 glutathione reductase 98.3 9.3E-06 2E-10 82.3 13.6 102 34-178 238-339 (561)
267 TIGR01423 trypano_reduc trypan 98.3 7.9E-06 1.7E-10 81.7 13.0 101 34-178 188-291 (486)
268 TIGR02374 nitri_red_nirB nitri 98.3 4E-06 8.7E-11 88.8 11.4 102 33-178 140-241 (785)
269 TIGR01811 sdhA_Bsu succinate d 98.3 9.8E-06 2.1E-10 83.2 13.7 33 36-68 1-33 (603)
270 PRK12844 3-ketosteroid-delta-1 98.3 2.5E-05 5.4E-10 79.6 16.4 39 32-70 5-43 (557)
271 PRK08626 fumarate reductase fl 98.3 1.9E-05 4.1E-10 81.8 15.7 37 33-69 5-41 (657)
272 TIGR01176 fum_red_Fp fumarate 98.3 8.8E-06 1.9E-10 83.2 13.1 137 33-174 3-196 (580)
273 PTZ00052 thioredoxin reductase 98.3 9.5E-06 2E-10 81.7 13.0 99 34-178 183-281 (499)
274 PRK12837 3-ketosteroid-delta-1 98.3 2.3E-05 5E-10 79.2 15.8 38 32-70 6-43 (513)
275 PRK13748 putative mercuric red 98.3 8.5E-06 1.8E-10 83.6 12.8 98 34-178 271-368 (561)
276 COG0446 HcaD Uncharacterized N 98.3 8.6E-06 1.9E-10 80.1 12.2 102 33-176 136-238 (415)
277 TIGR01438 TGR thioredoxin and 98.3 1.3E-05 2.9E-10 80.2 13.5 102 34-178 181-282 (484)
278 PRK09231 fumarate reductase fl 98.3 1.8E-05 3.8E-10 81.2 14.5 38 33-70 4-43 (582)
279 PRK07843 3-ketosteroid-delta-1 98.3 1.9E-05 4.2E-10 80.5 14.6 38 33-70 7-44 (557)
280 PRK06292 dihydrolipoamide dehy 98.2 1.6E-05 3.5E-10 79.5 13.8 102 34-178 170-271 (460)
281 KOG1335 Dihydrolipoamide dehyd 98.2 7.1E-06 1.5E-10 75.9 10.0 150 34-227 212-367 (506)
282 PTZ00306 NADH-dependent fumara 98.2 2.5E-05 5.4E-10 86.2 16.2 38 33-70 409-446 (1167)
283 PRK12843 putative FAD-binding 98.2 3.6E-05 7.8E-10 78.9 16.2 40 32-71 15-54 (578)
284 KOG0029 Amine oxidase [Seconda 98.2 1.7E-06 3.7E-11 85.9 5.6 43 29-71 11-53 (501)
285 PRK12834 putative FAD-binding 98.2 2.3E-05 4.9E-10 80.0 13.9 39 32-70 3-43 (549)
286 PTZ00153 lipoamide dehydrogena 98.2 2.2E-05 4.7E-10 80.9 13.4 111 34-179 313-431 (659)
287 PF06039 Mqo: Malate:quinone o 98.2 4.4E-05 9.6E-10 73.2 14.4 60 110-173 184-244 (488)
288 PTZ00318 NADH dehydrogenase-li 98.2 3.1E-05 6.7E-10 76.5 13.9 91 34-171 174-278 (424)
289 PRK09077 L-aspartate oxidase; 98.2 4.9E-05 1.1E-09 77.3 15.4 38 32-70 7-44 (536)
290 PLN02546 glutathione reductase 98.1 2.7E-05 5.8E-10 79.0 12.8 102 33-178 252-353 (558)
291 KOG1298 Squalene monooxygenase 98.1 1.2E-05 2.6E-10 74.5 9.2 138 31-174 43-209 (509)
292 PRK07512 L-aspartate oxidase; 98.1 2.6E-05 5.7E-10 78.7 12.4 64 105-174 134-198 (513)
293 TIGR02061 aprA adenosine phosp 98.1 5.6E-05 1.2E-09 77.4 14.7 33 35-67 1-37 (614)
294 KOG2404 Fumarate reductase, fl 98.1 3E-05 6.5E-10 70.2 11.0 39 33-71 9-47 (477)
295 TIGR02485 CobZ_N-term precorri 98.1 4E-05 8.6E-10 76.0 12.9 62 105-173 121-183 (432)
296 PRK10262 thioredoxin reductase 98.1 2.3E-05 4.9E-10 74.5 10.7 105 34-178 147-251 (321)
297 COG0445 GidA Flavin-dependent 98.1 9.2E-06 2E-10 78.8 7.9 131 33-172 4-157 (621)
298 PLN02576 protoporphyrinogen ox 98.1 5.9E-06 1.3E-10 83.5 7.0 43 32-74 11-54 (496)
299 COG1053 SdhA Succinate dehydro 98.1 3.4E-05 7.4E-10 77.9 12.1 39 31-69 4-42 (562)
300 PRK11883 protoporphyrinogen ox 98.1 4.1E-06 8.9E-11 83.5 5.4 45 34-78 1-47 (451)
301 TIGR01292 TRX_reduct thioredox 98.1 2.2E-05 4.7E-10 73.7 10.0 32 206-237 2-33 (300)
302 TIGR00562 proto_IX_ox protopor 98.1 5.4E-06 1.2E-10 83.0 6.2 42 33-74 2-47 (462)
303 TIGR02733 desat_CrtD C-3',4' d 98.0 8.1E-06 1.8E-10 82.3 6.8 50 34-83 2-51 (492)
304 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 1.7E-05 3.6E-10 76.9 8.5 35 34-68 1-35 (433)
305 KOG2495 NADH-dehydrogenase (ub 98.0 8.2E-06 1.8E-10 76.7 5.9 131 6-179 185-335 (491)
306 TIGR00031 UDP-GALP_mutase UDP- 98.0 6.3E-06 1.4E-10 79.0 5.3 40 33-72 1-40 (377)
307 PLN02268 probable polyamine ox 98.0 8.1E-06 1.7E-10 81.0 6.3 40 34-73 1-40 (435)
308 PLN02676 polyamine oxidase 98.0 1.2E-05 2.5E-10 80.6 7.2 53 32-84 25-78 (487)
309 KOG1336 Monodehydroascorbate/f 98.0 5.1E-05 1.1E-09 72.6 10.4 107 33-181 213-319 (478)
310 TIGR02730 carot_isom carotene 98.0 9.6E-06 2.1E-10 81.7 6.0 40 34-73 1-40 (493)
311 COG0562 Glf UDP-galactopyranos 98.0 9.8E-06 2.1E-10 73.4 5.0 44 33-76 1-44 (374)
312 PRK12416 protoporphyrinogen ox 98.0 8.5E-06 1.8E-10 81.6 5.3 42 33-74 1-48 (463)
313 PLN02568 polyamine oxidase 97.9 1.4E-05 3E-10 80.8 6.4 48 32-79 4-56 (539)
314 PRK07233 hypothetical protein; 97.9 9.6E-06 2.1E-10 80.4 5.2 40 35-74 1-40 (434)
315 KOG2852 Possible oxidoreductas 97.9 0.00012 2.5E-09 65.5 11.0 42 29-70 6-53 (380)
316 TIGR02734 crtI_fam phytoene de 97.9 1.4E-05 3.1E-10 80.8 6.2 36 36-71 1-36 (502)
317 COG3349 Uncharacterized conser 97.9 1.1E-05 2.3E-10 78.3 4.9 38 34-71 1-38 (485)
318 PRK04176 ribulose-1,5-biphosph 97.9 4.6E-05 1E-09 69.6 8.5 191 202-417 23-256 (257)
319 TIGR03169 Nterm_to_SelD pyridi 97.9 9.4E-05 2E-09 71.6 10.5 90 34-171 146-241 (364)
320 COG3573 Predicted oxidoreducta 97.9 0.00019 4.1E-09 65.5 11.2 38 33-70 5-44 (552)
321 PTZ00363 rab-GDP dissociation 97.8 1.9E-05 4.1E-10 77.6 4.8 44 32-75 3-46 (443)
322 TIGR03140 AhpF alkyl hydropero 97.8 0.0002 4.4E-09 72.5 12.0 100 34-178 353-453 (515)
323 PRK12770 putative glutamate sy 97.8 0.00014 3.1E-09 69.9 10.1 102 34-176 173-287 (352)
324 KOG2665 Predicted FAD-dependen 97.8 0.00019 4E-09 65.0 9.5 43 27-69 42-86 (453)
325 KOG0685 Flavin-containing amin 97.8 3.6E-05 7.7E-10 73.6 5.3 41 34-74 22-63 (498)
326 TIGR02731 phytoene_desat phyto 97.8 3.4E-05 7.4E-10 77.0 5.5 38 35-72 1-38 (453)
327 PLN02529 lysine-specific histo 97.7 4.7E-05 1E-09 79.0 6.1 47 27-73 154-200 (738)
328 KOG2311 NAD/FAD-utilizing prot 97.7 0.00018 4E-09 68.6 9.3 133 31-172 26-185 (679)
329 TIGR00292 thiazole biosynthesi 97.7 0.00015 3.2E-09 66.0 8.5 191 202-416 19-254 (254)
330 PF03486 HI0933_like: HI0933-l 97.7 5.3E-05 1.1E-09 73.7 5.4 138 206-354 2-166 (409)
331 PRK05335 tRNA (uracil-5-)-meth 97.7 5E-05 1.1E-09 73.2 5.1 36 33-68 2-37 (436)
332 TIGR01316 gltA glutamate synth 97.7 0.00029 6.4E-09 70.0 10.5 105 34-177 273-389 (449)
333 PLN02487 zeta-carotene desatur 97.6 8.9E-05 1.9E-09 75.2 5.9 42 32-73 74-115 (569)
334 KOG3855 Monooxygenase involved 97.6 0.00082 1.8E-08 63.3 11.4 134 32-173 35-217 (481)
335 TIGR02732 zeta_caro_desat caro 97.6 9.3E-05 2E-09 74.0 5.2 38 35-72 1-38 (474)
336 PLN02328 lysine-specific histo 97.6 0.00012 2.5E-09 76.6 6.0 45 30-74 235-279 (808)
337 PRK15317 alkyl hydroperoxide r 97.5 0.00058 1.2E-08 69.3 10.9 99 34-177 352-451 (517)
338 PF13434 K_oxygenase: L-lysine 97.5 0.00054 1.2E-08 65.3 10.0 131 32-170 189-338 (341)
339 PLN02661 Putative thiazole syn 97.5 0.0006 1.3E-08 64.2 10.1 38 200-237 88-126 (357)
340 COG1231 Monoamine oxidase [Ami 97.5 0.00011 2.5E-09 70.1 5.3 41 31-71 5-45 (450)
341 TIGR02462 pyranose_ox pyranose 97.5 0.0001 2.2E-09 74.0 5.2 40 34-73 1-40 (544)
342 PRK12779 putative bifunctional 97.5 0.00021 4.6E-09 76.9 7.8 36 202-237 304-339 (944)
343 PF01134 GIDA: Glucose inhibit 97.5 6.2E-05 1.3E-09 71.9 3.3 137 206-352 1-150 (392)
344 PF07992 Pyr_redox_2: Pyridine 97.5 9.2E-05 2E-09 65.0 3.6 32 206-237 1-32 (201)
345 PLN02612 phytoene desaturase 97.5 0.00019 4.2E-09 73.3 6.2 44 28-71 88-131 (567)
346 PRK06847 hypothetical protein; 97.5 0.00034 7.5E-09 67.9 7.7 34 204-237 4-37 (375)
347 PRK12831 putative oxidoreducta 97.5 0.0014 3.1E-08 65.3 12.2 106 33-177 281-398 (464)
348 PF00732 GMC_oxred_N: GMC oxid 97.4 8.2E-05 1.8E-09 69.7 3.1 34 34-67 1-35 (296)
349 PLN02463 lycopene beta cyclase 97.4 0.00034 7.4E-09 69.1 7.5 135 205-355 29-170 (447)
350 KOG2844 Dimethylglycine dehydr 97.4 0.00062 1.3E-08 67.7 8.7 61 103-173 183-243 (856)
351 COG3075 GlpB Anaerobic glycero 97.4 0.00019 4.1E-09 65.4 4.7 34 33-66 2-35 (421)
352 PRK09853 putative selenate red 97.4 0.00037 8.1E-09 74.4 7.5 36 202-237 537-572 (1019)
353 PRK11749 dihydropyrimidine deh 97.4 0.0016 3.4E-08 65.1 11.7 105 33-176 273-388 (457)
354 PRK01438 murD UDP-N-acetylmura 97.4 0.00053 1.1E-08 69.0 8.0 34 33-66 16-49 (480)
355 PF06100 Strep_67kDa_ant: Stre 97.4 0.006 1.3E-07 59.6 14.5 39 34-72 3-45 (500)
356 PLN02976 amine oxidase 97.3 0.00027 5.9E-09 76.9 5.7 44 32-75 692-735 (1713)
357 PLN03000 amine oxidase 97.3 0.00032 7E-09 73.5 6.1 44 32-75 183-226 (881)
358 TIGR03143 AhpF_homolog putativ 97.3 0.0016 3.5E-08 66.6 10.8 101 33-178 143-249 (555)
359 PRK08773 2-octaprenyl-3-methyl 97.3 0.00066 1.4E-08 66.4 7.6 34 204-237 6-39 (392)
360 PRK06834 hypothetical protein; 97.3 0.00092 2E-08 67.2 8.7 33 205-237 4-36 (488)
361 PRK12810 gltD glutamate syntha 97.3 0.0025 5.5E-08 63.8 11.8 114 33-176 281-401 (471)
362 COG1635 THI4 Ribulose 1,5-bisp 97.3 0.00031 6.7E-09 60.5 4.3 37 201-237 27-63 (262)
363 PLN02852 ferredoxin-NADP+ redu 97.3 0.00056 1.2E-08 68.0 6.8 36 202-237 24-61 (491)
364 COG2907 Predicted NAD/FAD-bind 97.3 0.00027 5.9E-09 64.9 4.0 41 32-73 7-47 (447)
365 PRK12778 putative bifunctional 97.2 0.0035 7.5E-08 66.6 12.6 106 33-177 570-688 (752)
366 KOG0042 Glycerol-3-phosphate d 97.2 0.00074 1.6E-08 65.6 6.1 39 32-70 66-104 (680)
367 KOG1276 Protoporphyrinogen oxi 97.1 0.0005 1.1E-08 65.0 4.5 42 33-74 11-54 (491)
368 KOG2853 Possible oxidoreductas 97.1 0.0041 8.9E-08 57.2 10.0 34 33-66 86-123 (509)
369 TIGR03315 Se_ygfK putative sel 97.1 0.00086 1.9E-08 71.9 6.6 35 203-237 536-570 (1012)
370 PF13738 Pyr_redox_3: Pyridine 97.1 0.00029 6.3E-09 61.9 2.5 30 208-237 1-31 (203)
371 TIGR01372 soxA sarcosine oxida 97.1 0.0031 6.7E-08 68.9 10.7 95 34-177 318-413 (985)
372 COG0654 UbiH 2-polyprenyl-6-me 97.1 0.001 2.2E-08 64.9 6.3 145 205-354 3-162 (387)
373 PRK06567 putative bifunctional 97.1 0.0015 3.4E-08 69.1 7.8 36 202-237 381-416 (1028)
374 KOG2960 Protein involved in th 97.1 0.00039 8.5E-09 59.3 2.7 137 33-171 76-232 (328)
375 PRK09126 hypothetical protein; 97.1 0.0021 4.6E-08 62.8 8.3 33 205-237 4-36 (392)
376 PRK02106 choline dehydrogenase 97.0 0.00069 1.5E-08 69.5 5.0 35 32-66 4-39 (560)
377 PRK12814 putative NADPH-depend 97.0 0.016 3.5E-07 60.4 15.0 105 33-176 323-438 (652)
378 PRK12769 putative oxidoreducta 97.0 0.0088 1.9E-07 62.5 13.1 104 34-176 469-585 (654)
379 PRK05868 hypothetical protein; 97.0 0.0025 5.3E-08 61.9 8.3 34 205-238 2-35 (372)
380 PRK12775 putative trifunctiona 97.0 0.0014 3E-08 71.3 6.7 35 203-237 429-463 (1006)
381 TIGR01789 lycopene_cycl lycope 97.0 0.0012 2.7E-08 63.7 5.7 32 206-237 1-34 (370)
382 TIGR01318 gltD_gamma_fam gluta 96.9 0.0097 2.1E-07 59.5 12.0 105 33-176 282-399 (467)
383 COG1206 Gid NAD(FAD)-utilizing 96.9 0.0019 4.1E-08 59.1 6.1 34 34-67 4-37 (439)
384 PRK05192 tRNA uridine 5-carbox 96.9 0.0045 9.7E-08 62.8 9.4 33 205-237 5-37 (618)
385 PRK08163 salicylate hydroxylas 96.9 0.0019 4E-08 63.3 6.4 34 204-237 4-37 (396)
386 TIGR01790 carotene-cycl lycope 96.9 0.0022 4.7E-08 62.6 6.8 32 206-237 1-32 (388)
387 KOG1399 Flavin-containing mono 96.9 0.011 2.4E-07 58.0 11.5 34 204-237 6-39 (448)
388 PLN02785 Protein HOTHEAD 96.9 0.0013 2.9E-08 67.3 5.3 36 31-67 53-88 (587)
389 PRK07236 hypothetical protein; 96.9 0.0018 4E-08 63.1 6.0 34 204-237 6-39 (386)
390 TIGR03378 glycerol3P_GlpB glyc 96.9 0.0014 3E-08 63.5 5.0 33 34-66 1-33 (419)
391 PRK07333 2-octaprenyl-6-methox 96.8 0.0039 8.5E-08 61.1 7.9 32 206-237 3-36 (403)
392 PRK05714 2-octaprenyl-3-methyl 96.8 0.0067 1.5E-07 59.6 9.3 32 206-237 4-35 (405)
393 TIGR01988 Ubi-OHases Ubiquinon 96.8 0.0033 7.1E-08 61.2 6.8 32 206-237 1-32 (385)
394 TIGR00136 gidA glucose-inhibit 96.7 0.0064 1.4E-07 61.6 8.9 32 206-237 2-33 (617)
395 PRK09897 hypothetical protein; 96.7 0.0085 1.8E-07 60.5 9.6 33 205-237 2-36 (534)
396 PRK10157 putative oxidoreducta 96.7 0.003 6.5E-08 62.5 6.3 33 205-237 6-38 (428)
397 PRK01438 murD UDP-N-acetylmura 96.7 0.0033 7.1E-08 63.3 6.7 36 202-237 14-49 (480)
398 PRK07608 ubiquinone biosynthes 96.7 0.0037 8E-08 61.0 6.7 33 206-238 7-39 (388)
399 PRK06184 hypothetical protein; 96.7 0.0051 1.1E-07 62.3 7.8 33 205-237 4-36 (502)
400 PRK08850 2-octaprenyl-6-methox 96.7 0.0055 1.2E-07 60.2 7.8 32 205-236 5-36 (405)
401 PF13454 NAD_binding_9: FAD-NA 96.7 0.023 4.9E-07 47.7 10.4 30 208-237 1-35 (156)
402 TIGR01470 cysG_Nterm siroheme 96.7 0.0027 5.9E-08 55.7 5.0 37 201-237 6-42 (205)
403 PTZ00188 adrenodoxin reductase 96.7 0.0043 9.4E-08 61.1 6.8 35 203-237 38-73 (506)
404 PRK06617 2-octaprenyl-6-methox 96.7 0.0022 4.7E-08 62.3 4.7 32 206-237 3-34 (374)
405 PRK08849 2-octaprenyl-3-methyl 96.6 0.0057 1.2E-07 59.6 7.7 33 205-237 4-36 (384)
406 PRK08244 hypothetical protein; 96.6 0.0056 1.2E-07 61.8 7.8 33 205-237 3-35 (493)
407 COG0492 TrxB Thioredoxin reduc 96.6 0.02 4.4E-07 53.5 10.7 97 33-177 143-240 (305)
408 PRK08020 ubiF 2-octaprenyl-3-m 96.6 0.0058 1.3E-07 59.7 7.5 33 205-237 6-38 (391)
409 PF05834 Lycopene_cycl: Lycope 96.6 0.004 8.6E-08 60.4 6.2 133 207-355 2-143 (374)
410 PLN02172 flavin-containing mon 96.6 0.0022 4.7E-08 63.8 4.2 35 32-66 203-237 (461)
411 PLN00093 geranylgeranyl diphos 96.6 0.017 3.6E-07 57.5 10.3 35 203-237 38-72 (450)
412 TIGR01317 GOGAT_sm_gam glutama 96.5 0.0053 1.1E-07 61.7 6.7 35 203-237 142-176 (485)
413 KOG1346 Programmed cell death 96.5 0.0077 1.7E-07 56.9 7.2 102 32-178 346-452 (659)
414 COG3486 IucD Lysine/ornithine 96.5 0.042 9.2E-07 52.1 12.0 161 4-179 161-344 (436)
415 COG2303 BetA Choline dehydroge 96.5 0.0025 5.5E-08 64.7 4.4 36 31-66 5-40 (542)
416 PRK06753 hypothetical protein; 96.5 0.0056 1.2E-07 59.4 6.6 33 206-238 2-34 (373)
417 TIGR01984 UbiH 2-polyprenyl-6- 96.5 0.0058 1.3E-07 59.5 6.7 32 206-237 1-33 (382)
418 PRK07588 hypothetical protein; 96.5 0.0039 8.4E-08 60.9 5.4 32 206-237 2-33 (391)
419 TIGR01810 betA choline dehydro 96.5 0.0023 4.9E-08 65.3 3.9 32 35-66 1-33 (532)
420 PRK07190 hypothetical protein; 96.5 0.014 3E-07 58.7 9.4 33 205-237 6-38 (487)
421 KOG3923 D-aspartate oxidase [A 96.5 0.0064 1.4E-07 55.0 6.1 35 32-66 2-43 (342)
422 PRK07045 putative monooxygenas 96.5 0.01 2.3E-07 57.9 8.3 34 205-238 6-39 (388)
423 PRK08013 oxidoreductase; Provi 96.5 0.0072 1.5E-07 59.3 7.1 34 205-238 4-37 (400)
424 KOG0405 Pyridine nucleotide-di 96.5 0.011 2.3E-07 54.8 7.3 104 32-179 188-291 (478)
425 TIGR02023 BchP-ChlP geranylger 96.4 0.014 3.1E-07 56.9 9.0 31 206-236 2-32 (388)
426 PF00743 FMO-like: Flavin-bind 96.4 0.0059 1.3E-07 61.8 6.4 34 204-237 1-34 (531)
427 TIGR00275 flavoprotein, HI0933 96.4 0.0087 1.9E-07 58.6 7.4 30 208-237 1-30 (400)
428 PRK12809 putative oxidoreducta 96.4 0.043 9.3E-07 57.2 12.8 101 33-170 451-564 (639)
429 TIGR02032 GG-red-SF geranylger 96.4 0.009 2E-07 55.6 7.0 32 206-237 2-33 (295)
430 PRK07364 2-octaprenyl-6-methox 96.4 0.0074 1.6E-07 59.5 6.6 34 204-237 18-51 (415)
431 COG2072 TrkA Predicted flavopr 96.4 0.035 7.5E-07 55.1 11.1 34 204-237 8-42 (443)
432 TIGR02028 ChlP geranylgeranyl 96.3 0.0076 1.6E-07 59.0 6.1 32 206-237 2-33 (398)
433 COG1251 NirB NAD(P)H-nitrite r 96.3 0.0073 1.6E-07 61.3 5.9 100 34-177 146-245 (793)
434 PRK05562 precorrin-2 dehydroge 96.3 0.0091 2E-07 52.7 5.8 35 202-236 23-57 (223)
435 PF12831 FAD_oxidored: FAD dep 96.3 0.004 8.7E-08 61.6 3.9 32 206-237 1-32 (428)
436 PLN02697 lycopene epsilon cycl 96.2 0.014 3.1E-07 58.8 7.7 32 205-236 109-140 (529)
437 COG4529 Uncharacterized protei 96.2 0.016 3.5E-07 56.3 7.6 33 205-237 2-37 (474)
438 PRK06718 precorrin-2 dehydroge 96.2 0.0085 1.8E-07 52.5 5.3 36 201-236 7-42 (202)
439 PRK05329 anaerobic glycerol-3- 96.2 0.041 8.8E-07 54.0 10.4 93 37-171 219-316 (422)
440 KOG2755 Oxidoreductase [Genera 96.2 0.013 2.8E-07 52.0 6.2 26 331-356 81-106 (334)
441 COG0644 FixC Dehydrogenases (f 96.2 0.01 2.2E-07 58.2 6.1 137 205-354 4-152 (396)
442 PRK10015 oxidoreductase; Provi 96.2 0.007 1.5E-07 59.8 5.1 33 205-237 6-38 (429)
443 KOG4254 Phytoene desaturase [C 96.1 0.0061 1.3E-07 58.2 4.0 40 31-70 12-51 (561)
444 TIGR03862 flavo_PP4765 unchara 96.1 0.029 6.3E-07 53.9 8.7 61 104-175 83-143 (376)
445 PRK13984 putative oxidoreducta 96.1 0.059 1.3E-06 55.9 11.5 30 34-63 419-454 (604)
446 PRK07494 2-octaprenyl-6-methox 96.0 0.026 5.6E-07 55.1 8.3 33 205-237 8-40 (388)
447 TIGR03219 salicylate_mono sali 96.0 0.011 2.3E-07 58.3 5.6 32 206-237 2-34 (414)
448 KOG4716 Thioredoxin reductase 96.0 0.016 3.5E-07 53.3 6.0 103 35-177 200-302 (503)
449 KOG0399 Glutamate synthase [Am 96.0 0.014 3E-07 61.7 6.2 39 199-237 1780-1818(2142)
450 PRK12771 putative glutamate sy 95.8 0.096 2.1E-06 53.9 11.9 101 33-171 267-378 (564)
451 PRK06183 mhpA 3-(3-hydroxyphen 95.8 0.019 4.2E-07 58.6 6.8 34 204-237 10-43 (538)
452 KOG3851 Sulfide:quinone oxidor 95.8 0.027 5.9E-07 51.5 6.7 38 325-363 114-153 (446)
453 PF00996 GDI: GDP dissociation 95.8 0.012 2.5E-07 57.7 4.7 45 32-76 3-47 (438)
454 PRK06475 salicylate hydroxylas 95.8 0.024 5.1E-07 55.6 6.9 33 205-237 3-35 (400)
455 PRK08401 L-aspartate oxidase; 95.8 0.075 1.6E-06 53.2 10.5 33 205-237 2-34 (466)
456 PRK11728 hydroxyglutarate oxid 95.7 0.043 9.2E-07 53.7 8.3 32 206-237 4-37 (393)
457 PRK05732 2-octaprenyl-6-methox 95.7 0.02 4.3E-07 56.0 5.9 32 205-236 4-38 (395)
458 TIGR01989 COQ6 Ubiquinone bios 95.6 0.027 5.9E-07 55.9 6.6 32 206-237 2-37 (437)
459 PRK06996 hypothetical protein; 95.5 0.015 3.2E-07 57.0 4.2 33 205-237 12-48 (398)
460 PRK11445 putative oxidoreducta 95.5 0.024 5.2E-07 54.5 5.5 31 206-237 3-33 (351)
461 PRK06126 hypothetical protein; 95.4 0.08 1.7E-06 54.2 9.4 34 204-237 7-40 (545)
462 PF13241 NAD_binding_7: Putati 95.4 0.011 2.5E-07 45.6 2.5 37 201-237 4-40 (103)
463 PF02558 ApbA: Ketopantoate re 95.3 0.016 3.5E-07 48.2 3.4 72 207-350 1-75 (151)
464 PRK08132 FAD-dependent oxidore 95.3 0.041 8.9E-07 56.4 6.9 34 204-237 23-56 (547)
465 PRK08243 4-hydroxybenzoate 3-m 95.3 0.038 8.2E-07 54.0 6.2 33 205-237 3-35 (392)
466 COG0493 GltD NADPH-dependent g 95.3 0.024 5.1E-07 56.1 4.7 37 201-237 120-156 (457)
467 KOG2311 NAD/FAD-utilizing prot 95.2 0.089 1.9E-06 50.9 8.2 33 205-237 29-61 (679)
468 KOG1238 Glucose dehydrogenase/ 95.2 0.022 4.7E-07 57.3 4.4 39 30-68 54-93 (623)
469 PRK06185 hypothetical protein; 95.2 0.035 7.5E-07 54.6 5.9 34 204-237 6-39 (407)
470 PLN02927 antheraxanthin epoxid 95.2 0.067 1.5E-06 55.3 7.9 36 202-237 79-114 (668)
471 PF04820 Trp_halogenase: Trypt 95.1 0.046 9.9E-07 54.4 6.5 52 305-356 155-213 (454)
472 PF13450 NAD_binding_8: NAD(P) 95.1 0.018 3.9E-07 40.6 2.6 29 209-237 1-29 (68)
473 PF01210 NAD_Gly3P_dh_N: NAD-d 95.1 0.021 4.6E-07 47.9 3.4 32 35-66 1-32 (157)
474 TIGR02360 pbenz_hydroxyl 4-hyd 95.1 0.048 1E-06 53.3 6.3 33 205-237 3-35 (390)
475 PRK06481 fumarate reductase fl 95.0 0.21 4.5E-06 50.6 10.9 33 205-237 62-94 (506)
476 KOG0404 Thioredoxin reductase 95.0 0.077 1.7E-06 46.1 6.4 31 204-234 8-38 (322)
477 COG0445 GidA Flavin-dependent 95.0 0.16 3.4E-06 50.3 9.3 33 205-237 5-37 (621)
478 PRK07538 hypothetical protein; 94.9 0.055 1.2E-06 53.3 6.2 32 206-237 2-33 (413)
479 TIGR03197 MnmC_Cterm tRNA U-34 94.9 0.061 1.3E-06 52.4 6.4 63 103-176 131-193 (381)
480 KOG2614 Kynurenine 3-monooxyge 94.8 0.035 7.7E-07 52.8 4.4 33 205-237 3-35 (420)
481 TIGR02352 thiamin_ThiO glycine 94.8 0.27 5.8E-06 46.7 10.6 65 102-176 132-196 (337)
482 TIGR00551 nadB L-aspartate oxi 94.7 0.2 4.4E-06 50.5 9.9 31 206-237 4-34 (488)
483 KOG4405 GDP dissociation inhib 94.7 0.036 7.7E-07 52.4 4.0 46 33-78 8-53 (547)
484 COG0569 TrkA K+ transport syst 94.7 0.042 9.1E-07 49.1 4.3 32 35-66 2-33 (225)
485 COG1148 HdrA Heterodisulfide r 94.6 0.066 1.4E-06 51.9 5.6 35 203-237 123-157 (622)
486 PRK05335 tRNA (uracil-5-)-meth 94.6 0.033 7.1E-07 54.2 3.6 33 205-237 3-35 (436)
487 PRK05708 2-dehydropantoate 2-r 94.6 0.075 1.6E-06 49.9 6.0 33 205-237 3-35 (305)
488 PRK08255 salicylyl-CoA 5-hydro 94.5 0.062 1.3E-06 57.2 5.7 32 206-237 2-35 (765)
489 COG1648 CysG Siroheme synthase 94.4 0.065 1.4E-06 47.1 4.8 37 201-237 9-45 (210)
490 PRK10637 cysG siroheme synthas 94.4 0.06 1.3E-06 53.6 5.1 36 200-235 8-43 (457)
491 PF02737 3HCDH_N: 3-hydroxyacy 94.3 0.05 1.1E-06 46.8 3.9 32 35-66 1-32 (180)
492 PRK06129 3-hydroxyacyl-CoA deh 94.2 0.056 1.2E-06 50.9 4.3 34 33-66 2-35 (308)
493 COG3380 Predicted NAD/FAD-depe 94.2 0.21 4.5E-06 45.0 7.4 32 206-237 3-34 (331)
494 PRK07066 3-hydroxybutyryl-CoA 94.2 0.069 1.5E-06 50.3 4.8 35 32-66 6-40 (321)
495 PRK06249 2-dehydropantoate 2-r 94.2 0.2 4.3E-06 47.3 8.0 78 200-350 1-80 (313)
496 PRK06719 precorrin-2 dehydroge 94.2 0.04 8.7E-07 46.1 2.8 35 200-234 9-43 (157)
497 TIGR00137 gid_trmFO tRNA:m(5)U 94.1 0.044 9.5E-07 53.5 3.4 32 206-237 2-33 (433)
498 PRK06719 precorrin-2 dehydroge 94.0 0.077 1.7E-06 44.4 4.2 32 34-65 14-45 (157)
499 PRK06175 L-aspartate oxidase; 94.0 0.44 9.5E-06 47.2 10.2 31 206-237 6-36 (433)
500 PF01593 Amino_oxidase: Flavin 94.0 0.075 1.6E-06 52.2 4.9 42 43-84 1-44 (450)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=4.3e-44 Score=355.19 Aligned_cols=367 Identities=32% Similarity=0.512 Sum_probs=224.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc---------cccCceeeecCCceeecCCCCCCCCCCCCC
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL---------KTYDRLRLHLPKQFCELPLMGFPSEFPTYP 104 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (433)
++|+|||||++||++|..|.+.|++++++|+++.+||.|+. ..|+.+.++.++.++.|+++|+|+.++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 67999999999999999999999999999999999999985 358889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCc--ceecceEEEEEEeCC---CCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCC
Q 013943 105 SKQQFVDYLEAYAKRFEIR--PRFNETVSQAEYDAT---IRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPE 179 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~~~l~--~~~~~~v~~v~~~~~---~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~ 179 (433)
+..++.+|++.+++++++. ++++++|++++..++ .+.|+|++++ +++..+..+|.||+|||.++.|++|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----~g~~~~~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----DGKEETEEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----TTEEEEEEECEEEEEE-SSSCESB--
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----CCeEEEEEeCeEEEcCCCcCCCCCCh
Confidence 9999999999999999986 699999999998764 2579998764 33456778999999999999999995
Q ss_pred --ccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceeccccc-CCcch-----
Q 013943 180 --IEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEML-GKSTF----- 251 (433)
Q Consensus 180 --~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~-~~~~~----- 251 (433)
+||.+.|.|.++|+..+.+...+++|+|+|||+|.||+|+|.+|+..+++|++..|++.|++|+... |.+.-
T Consensus 157 ~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~ 236 (531)
T PF00743_consen 157 PSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFST 236 (531)
T ss_dssp ---CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------------
T ss_pred hhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998653 33211
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecCceEEeCC
Q 013943 252 GLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPGIKRLKRY 331 (433)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~ 331 (433)
....++.+.++....+++....-.... +...+++ .|. .......|.+++++...+..|+|++.++|.+++++
T Consensus 237 R~~~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl-~p~------~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~ 308 (531)
T PF00743_consen 237 RFSSFLQKNLPESLSNWLLEKKLNKRF-DHENYGL-KPK------HRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTEN 308 (531)
T ss_dssp ----------------------------------------------------------------------EE-EEEE-SS
T ss_pred ccccccccccccccccccccccccccc-ccccccc-ccc------ccccccccccccccccccccccccccccccccccc
Confidence 112223333444433333221110000 1111222 111 11234467889999999999999999899999999
Q ss_pred eEEEcCCcEe-cccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCC---CCCCceEEeeecccc---cccchhhH
Q 013943 332 AVEFVNGRCE-NFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGW---KGESGLYSVGFTKRG---LLGVAMDA 404 (433)
Q Consensus 332 ~v~~~~g~~~-~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~---~~~~~iya~Gd~~~~---~~~a~~~g 404 (433)
++.+.||+++ ++|.||+||||..+. .|+++.-+.. .++.+. -+...+ ...|++..+|.+... ...+..||
T Consensus 309 ~v~F~DGs~~e~vD~II~~TGY~~~f-pFL~~~~~~~-~~~~~~-LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQA 385 (531)
T PF00743_consen 309 SVIFEDGSTEEDVDVIIFCTGYKFSF-PFLDESLIKV-DDNRVR-LYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQA 385 (531)
T ss_dssp EEEETTSEEEEE-SEEEE---EE----TTB-TTTT-S--SSSSS-EETTTEETETTSTTEEESS-SBSSS-HHHHHHHHH
T ss_pred cccccccccccccccccccccccccc-cccccccccc-cccccc-ccccccccccccccccccccccccccccccccccc
Confidence 9999999985 699999999999998 4666542322 222221 111222 135899999987642 23578999
Q ss_pred HHHHHHHHhhhc
Q 013943 405 KRIAQDIESCWK 416 (433)
Q Consensus 405 ~~~a~~i~~~l~ 416 (433)
+++|.-+.+.++
T Consensus 386 rw~a~v~sG~~~ 397 (531)
T PF00743_consen 386 RWAARVFSGRVK 397 (531)
T ss_dssp HHHHHHHTTSS-
T ss_pred cccccccccccc
Confidence 999998877654
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.5e-38 Score=312.00 Aligned_cols=313 Identities=23% Similarity=0.387 Sum_probs=242.8
Q ss_pred CccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccccc--------------------ccCceeeecCCce
Q 013943 29 RCICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLK--------------------TYDRLRLHLPKQF 88 (433)
Q Consensus 29 ~~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~--------------------~~~~~~~~~~~~~ 88 (433)
.+...++|+|||||++||++|..|++.|++++++|+++.+||.|... +|+.+..+.|+..
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 34456999999999999999999999999999999999999999752 3667778888888
Q ss_pred eecCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHcCCc--ceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEE
Q 013943 89 CELPLMGFPSE-------FPTYPSKQQFVDYLEAYAKRFEIR--PRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEME 159 (433)
Q Consensus 89 ~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~l~--~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~ 159 (433)
+.|.+++++.. .+.|++..++.+|++++++++++. ++++++|++++..+ +.|+|++.++ ++...+
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~----~~~~~~ 159 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNS----GGFSKD 159 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcC----CCceEE
Confidence 88888887542 256889999999999999999998 89999999999865 6899988653 222346
Q ss_pred EEeCEEEEccCCCCCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcc
Q 013943 160 YRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVH 239 (433)
Q Consensus 160 ~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~ 239 (433)
..||+||+|||.++.|++|.+||.+.+.|..+|+..+.....+++|+|+|||+|.+|+|+|..|+..+++|+++.|++..
T Consensus 160 ~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~ 239 (461)
T PLN02172 160 EIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASES 239 (461)
T ss_pred EEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccc
Confidence 78999999999999999999999999999999999999888899999999999999999999999999999999987620
Q ss_pred eecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCe
Q 013943 240 VLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHI 319 (433)
Q Consensus 240 ~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 319 (433)
. ... . . .+...++
T Consensus 240 ~-~~~--------------------------------------~--~--------------------------~~~~~~v 252 (461)
T PLN02172 240 D-TYE--------------------------------------K--L--------------------------PVPQNNL 252 (461)
T ss_pred c-ccc--------------------------------------c--C--------------------------cCCCCce
Confidence 0 000 0 0 0011223
Q ss_pred EEecCceEEe-CCeEEEcCCcEecccEEEEccCCCCCCCCcccccc-ccccCCCCcCCCCCC-CCCC-CCceEEeeeccc
Q 013943 320 RVFPGIKRLK-RYAVEFVNGRCENFDAIILATGYRSNVPSWLKESE-MFSRKDGLPRRPFPN-GWKG-ESGLYSVGFTKR 395 (433)
Q Consensus 320 ~~~~~v~~~~-~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~-l~~~~~g~~~~~~~~-~~~~-~~~iya~Gd~~~ 395 (433)
.+...|..+. +++|.+.||+.+++|.||+||||.++. .|+...+ +.. +++.+..-+.. .... .|+++.+|-...
T Consensus 253 ~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~-pfL~~~~~i~v-~~~~v~~Ly~~~f~~~~~p~LafiG~~~~ 330 (461)
T PLN02172 253 WMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHF-PFLETNGYMRI-DENRVEPLYKHVFPPALAPGLSFIGLPAM 330 (461)
T ss_pred EECCcccceecCCeEEECCCCCccCCEEEECCcCCccc-cccCcccceee-CCCcchhhHHhhcCCCCCCcEEEEecccc
Confidence 3323344443 345889999999999999999999999 5776543 333 22222111112 1223 489999998754
Q ss_pred c--cccchhhHHHHHHHHHhhhc
Q 013943 396 G--LLGVAMDAKRIAQDIESCWK 416 (433)
Q Consensus 396 ~--~~~a~~~g~~~a~~i~~~l~ 416 (433)
. ......||+++|.-+.+++.
T Consensus 331 ~~~f~~~E~Qa~~~a~v~sG~~~ 353 (461)
T PLN02172 331 GIQFVMFEIQSKWVAAVLSGRVT 353 (461)
T ss_pred ccCchhHHHHHHHHHHHHcCCCC
Confidence 3 34678899999998877654
No 3
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-35 Score=269.95 Aligned_cols=287 Identities=22% Similarity=0.295 Sum_probs=225.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIP-SILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
.+|||+||||||+|+++|..+.+.+++ ++|+|+. .+||..... .....+| .++.-....++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~~~~-------------~~venyp---g~~~~~~g~~L~ 64 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQLTKT-------------TDVENYP---GFPGGILGPELM 64 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCccccc-------------eeecCCC---CCccCCchHHHH
Confidence 579999999999999999999999998 5555554 455432110 0111111 112224678888
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
+.+.+.+...++++.. ..|..++..++ .|.|.+.++ ++++++||+||| ..++.|.+|+...|.|..
T Consensus 65 ~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~~---------~~~ak~vIiAtG--~~~~~~~~~~e~e~~g~g 130 (305)
T COG0492 65 EQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDKG---------TYEAKAVIIATG--AGARKLGVPGEEEFEGKG 130 (305)
T ss_pred HHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECCC---------eEEEeEEEECcC--CcccCCCCCcchhhcCCc
Confidence 9999998888888766 67777777653 788998885 399999999999 777778888877888899
Q ss_pred eeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHH
Q 013943 191 RHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLL 270 (433)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (433)
++.|..++. .+.+|+|+|||+|.+|+|.|..|++.+++|++++|++... +
T Consensus 131 v~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-a---------------------------- 180 (305)
T COG0492 131 VSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-A---------------------------- 180 (305)
T ss_pred eEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-c----------------------------
Confidence 999999998 8899999999999999999999999999999999998322 1
Q ss_pred HHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhc-CCeEEecC--ceEEeC---CeEEEcCCc----E
Q 013943 271 LVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKS-GHIRVFPG--IKRLKR---YAVEFVNGR----C 340 (433)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~~~~---~~v~~~~g~----~ 340 (433)
.....+.+++ .+|.++.+ +.++.+ .++.+++.+ .
T Consensus 181 ------------------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~ 224 (305)
T COG0492 181 ------------------------------------EEILVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKE 224 (305)
T ss_pred ------------------------------------CHHHHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEE
Confidence 0111222332 27887776 788877 467777632 5
Q ss_pred ecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc----cccchhhHHHHHHHHHhhhc
Q 013943 341 ENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG----LLGVAMDAKRIAQDIESCWK 416 (433)
Q Consensus 341 ~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~----~~~a~~~g~~~a~~i~~~l~ 416 (433)
+++|-++.++|+.|++ .++++.+. .+++|+++++ +.++|++|||||+||++.. +..|..+|..+|..+.+++.
T Consensus 225 ~~~~gvf~~iG~~p~~-~~~~~~~~-~~~~g~I~v~-~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 225 LPVDGVFIAIGHLPNT-ELLKGLGV-LDENGYIVVD-EEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred EEeceEEEecCCCCch-HHHhhccc-cCCCCcEEcC-CCcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhh
Confidence 8999999999999999 78888866 5689999999 5699999999999999953 66899999999999998876
Q ss_pred cC
Q 013943 417 AK 418 (433)
Q Consensus 417 ~~ 418 (433)
..
T Consensus 302 ~~ 303 (305)
T COG0492 302 SL 303 (305)
T ss_pred hc
Confidence 53
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=283.60 Aligned_cols=353 Identities=29% Similarity=0.435 Sum_probs=254.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIP-SILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
.++||+|||||++|+++|.+|.+.|.+ ++|+||++..||.|+.++|+++.+++++..+.|+..+++ +...++....+.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~~ 85 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEIK 85 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccHH
Confidence 578999999999999999999999998 999999999999999999999999999999999999986 233445555577
Q ss_pred HHHHHHHHHcCCc--ceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCC
Q 013943 111 DYLEAYAKRFEIR--PRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGG 188 (433)
Q Consensus 111 ~~l~~~~~~~~l~--~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~ 188 (433)
+|+..+++++++. +.+++.|..++.+.+.+.|+|+++++ . ..+ +++|.||+|||.++.|++|.++|.+.|.|
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~----~-~~~-~~a~~vV~ATG~~~~P~iP~~~G~~~f~g 159 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDG----G-TGE-LTADFVVVATGHLSEPYIPDFAGLDEFKG 159 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCC----C-eee-EecCEEEEeecCCCCCCCCCCCCccCCCc
Confidence 7888888887766 57778888899988878999999875 1 112 78999999999999999999999999999
Q ss_pred ceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHH
Q 013943 189 DIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDK 268 (433)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (433)
..+|+.++.+...+++|+|+|||+|+||++++..|++.|++||+++|++.+++|....+............ ++......
T Consensus 160 ~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 238 (443)
T COG2072 160 RILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRA-LPAGWALR 238 (443)
T ss_pred eEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhhh-Cccceehh
Confidence 99999999999999999999999999999999999999999999999999999987765433221111111 11111111
Q ss_pred HHHHHH------------------------HHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC
Q 013943 269 LLLVVS------------------------WLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG 324 (433)
Q Consensus 269 ~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 324 (433)
...... ..+.......++. ....+. . ....++...+..+.......++.+++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~-~-~~~~~r~~~~~~~~~~~~~~~~~~~~~ 315 (443)
T COG2072 239 RGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVR-EDLGPD-Y-APGDGRLVPDGDLFEAGASGDVEVVTE 315 (443)
T ss_pred hhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChH-hhcCCC-C-Cccccccccccchhhhhhhcccceeec
Confidence 000000 0000000000100 000000 0 011122445556667777788888877
Q ss_pred -ceEEeCCeEEEcCCcEecccEEEEccCCCCCCCCccccc-c-ccccCCCCcCCCCCCCCCCCCceEEeeecccc
Q 013943 325 -IKRLKRYAVEFVNGRCENFDAIILATGYRSNVPSWLKES-E-MFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG 396 (433)
Q Consensus 325 -v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~-~-l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~ 396 (433)
+..+....+....+.+++.|.++.+||+..+.-...... + ... ................|++|.++.....
T Consensus 316 ~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~pn~~~~~~~~~~ 389 (443)
T COG2072 316 IIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPW-DKDAPLAYKGLALSGGPNLFLIGGPTKA 389 (443)
T ss_pred cccccCCcceecCCCccccceEEEecCCCchhheeeeccccccccc-cccccceeccccccCCCceEEecCccCC
Confidence 677777777777777799999999999988531122111 1 111 1122333334566788999999876654
No 5
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=8.8e-35 Score=273.79 Aligned_cols=284 Identities=24% Similarity=0.310 Sum_probs=212.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
|||+|||||++|+++|..|++.|++|+++|++. .||.|.... .+..++. ++......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~------~~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPG------FPEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCC------CCCCCChHHHHHHH
Confidence 699999999999999999999999999999886 666553310 0001111 11123557889999
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCceeec
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHT 193 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~~~ 193 (433)
.+.++++++++++ ++|++++..+ ..|.+.+.++ ..+.||+||+||| +.|..|.+||...+.+...+.
T Consensus 64 ~~~~~~~gv~~~~-~~v~~v~~~~--~~~~v~~~~~--------~~~~~d~liiAtG--~~~~~~~i~g~~~~~~~~~~~ 130 (300)
T TIGR01292 64 KEQAVKFGAEIIY-EEVIKVDLSD--RPFKVKTGDG--------KEYTAKAVIIATG--ASARKLGIPGEDEFLGRGVSY 130 (300)
T ss_pred HHHHHHcCCeEEE-EEEEEEEecC--CeeEEEeCCC--------CEEEeCEEEECCC--CCcccCCCCChhhcCCccEEE
Confidence 9999999999888 7899998865 5677877664 6899999999999 678878888876655544554
Q ss_pred cCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHH
Q 013943 194 SLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVV 273 (433)
Q Consensus 194 ~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (433)
+...+.....+++++|||+|.+|+|+|..|++.+.+|+++.|.+... .
T Consensus 131 ~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-~------------------------------- 178 (300)
T TIGR01292 131 CATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-A------------------------------- 178 (300)
T ss_pred eeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-c-------------------------------
Confidence 44444445578899999999999999999999999999999987211 0
Q ss_pred HHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcC-CeEEecC--ceEEeCCe----EEEc---CC--cEe
Q 013943 274 SWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSG-HIRVFPG--IKRLKRYA----VEFV---NG--RCE 341 (433)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--v~~~~~~~----v~~~---~g--~~~ 341 (433)
...+.+.+++. +|+++.+ +.++..++ +.+. ++ +++
T Consensus 179 ---------------------------------~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i 225 (300)
T TIGR01292 179 ---------------------------------EKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEEL 225 (300)
T ss_pred ---------------------------------CHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEE
Confidence 00011223333 7777765 66665442 4432 23 569
Q ss_pred cccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeeccc----ccccchhhHHHHHHHHHhhh
Q 013943 342 NFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKR----GLLGVAMDAKRIAQDIESCW 415 (433)
Q Consensus 342 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~----~~~~a~~~g~~~a~~i~~~l 415 (433)
++|.||+|+|+.|+. .++.+. +..+.+|++.+| ++++++.|+||++|||+. .+..|+.+|+.+|.+|.++|
T Consensus 226 ~~D~vi~a~G~~~~~-~~l~~~-~~~~~~g~i~v~-~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 226 KVDGVFIAIGHEPNT-ELLKGL-LELDEGGYIVTD-EGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred EccEEEEeeCCCCCh-HHHHHh-heecCCCcEEEC-CCCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 999999999999998 577666 444678889888 567889999999999996 25579999999999998754
No 6
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.1e-33 Score=268.45 Aligned_cols=291 Identities=19% Similarity=0.261 Sum_probs=216.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
..+||+||||||+|+++|..|.+.|++++++|+. ..||.+... ...+.++. .+...+..++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~----------~~~~~~~~------~~~~~~~~~~~~ 67 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTT----------TEVENWPG------DPNDLTGPLLME 67 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecC----------ceECCCCC------CCCCCCHHHHHH
Confidence 5689999999999999999999999999999965 567654321 01111111 112346678888
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCcee
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIR 191 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~ 191 (433)
++.+....++.+++.+ +|+.++... +.|+++... ..+.||+||+||| +.|+.|++||.+.+.+..+
T Consensus 68 ~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~v~~~~---------~~~~~d~vilAtG--~~~~~~~i~g~~~~~~~~v 133 (321)
T PRK10262 68 RMHEHATKFETEIIFD-HINKVDLQN--RPFRLTGDS---------GEYTCDALIIATG--ASARYLGLPSEEAFKGRGV 133 (321)
T ss_pred HHHHHHHHCCCEEEee-EEEEEEecC--CeEEEEecC---------CEEEECEEEECCC--CCCCCCCCCCHHHcCCCcE
Confidence 9999888888776665 577787755 567776543 3689999999999 7788889999776666667
Q ss_pred eccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHH
Q 013943 192 HTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLL 271 (433)
Q Consensus 192 ~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (433)
+.+...+.....+++++|||+|.+|+|+|..|++.+++|+++.|++. + +.. . .
T Consensus 134 ~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~-~-~~~-~-----------------~------- 186 (321)
T PRK10262 134 SACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-F-RAE-K-----------------I------- 186 (321)
T ss_pred EEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc-c-CCC-H-----------------H-------
Confidence 77776666667899999999999999999999999999999999872 1 100 0 0
Q ss_pred HHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC-----eEEEcCC------
Q 013943 272 VVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY-----AVEFVNG------ 338 (433)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-----~v~~~~g------ 338 (433)
....+.+.+++.+|+++.+ +.++.++ ++++.++
T Consensus 187 ----------------------------------~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~ 232 (321)
T PRK10262 187 ----------------------------------LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNI 232 (321)
T ss_pred ----------------------------------HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeE
Confidence 0011124466678898876 7777665 3555432
Q ss_pred cEecccEEEEccCCCCCCCCccccccccccCCCCcCCCC----CCCCCCCCceEEeeecccc----cccchhhHHHHHHH
Q 013943 339 RCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPF----PNGWKGESGLYSVGFTKRG----LLGVAMDAKRIAQD 410 (433)
Q Consensus 339 ~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~----~~~~~~~~~iya~Gd~~~~----~~~a~~~g~~~a~~ 410 (433)
+++++|.||+++|+.|+. .++.. ++.. ++|++.+|. +.++|+.|+|||+|||+.. +..|+.+|..+|..
T Consensus 233 ~~i~~D~vv~a~G~~p~~-~l~~~-~l~~-~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~ 309 (321)
T PRK10262 233 ESLDVAGLFVAIGHSPNT-AIFEG-QLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALD 309 (321)
T ss_pred EEEECCEEEEEeCCccCh-hHhhc-cccc-cCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHH
Confidence 369999999999999998 45543 3443 567787773 2578999999999999953 45799999999999
Q ss_pred HHhhhcc
Q 013943 411 IESCWKA 417 (433)
Q Consensus 411 i~~~l~~ 417 (433)
|++++..
T Consensus 310 ~~~~l~~ 316 (321)
T PRK10262 310 AERYLDG 316 (321)
T ss_pred HHHHHHh
Confidence 9998854
No 7
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=3.9e-33 Score=279.65 Aligned_cols=288 Identities=20% Similarity=0.273 Sum_probs=216.3
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
...|||+||||||||+++|..|++.|++++++++ .+||.+... .. +..+... ......++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~--~~--------~~~~~~~-------~~~~~~~l~ 270 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT--VG--------IENLISV-------PYTTGSQLA 270 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC--cC--------ccccccc-------CCCCHHHHH
Confidence 4579999999999999999999999999999975 478876431 00 0000000 113567888
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
+.+.+.+++++++++.+++|++++.+. ..+.+++.++ ..+.||+||+||| +.++.|++||...+.+..
T Consensus 271 ~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~~~~g--------~~i~~d~lIlAtG--a~~~~~~ipG~~~~~~~~ 338 (515)
T TIGR03140 271 ANLEEHIKQYPIDLMENQRAKKIETED--GLIVVTLESG--------EVLKAKSVIVATG--ARWRKLGVPGEKEYIGKG 338 (515)
T ss_pred HHHHHHHHHhCCeEEcCCEEEEEEecC--CeEEEEECCC--------CEEEeCEEEECCC--CCcCCCCCCCHHHcCCCe
Confidence 899999999999999999999998765 5677777665 5799999999999 667778888865554444
Q ss_pred eeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHH
Q 013943 191 RHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLL 270 (433)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (433)
.+.+...+.....+++|+|||+|++|+|+|..|+..+.+||++.+.+. +.. ..
T Consensus 339 v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~-l~~-----------~~--------------- 391 (515)
T TIGR03140 339 VAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE-LKA-----------DK--------------- 391 (515)
T ss_pred EEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc-CCh-----------hH---------------
Confidence 454444444445689999999999999999999999999999987762 110 00
Q ss_pred HHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhc-CCeEEecC--ceEEeCC-----eEEEcC---C-
Q 013943 271 LVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKS-GHIRVFPG--IKRLKRY-----AVEFVN---G- 338 (433)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~--v~~~~~~-----~v~~~~---g- 338 (433)
.+.+.+++ .+|+++.+ +.++.++ ++.+.+ +
T Consensus 392 --------------------------------------~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~ 433 (515)
T TIGR03140 392 --------------------------------------VLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGE 433 (515)
T ss_pred --------------------------------------HHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCc
Confidence 00122332 47887766 6666544 355543 2
Q ss_pred -cEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc----cccchhhHHHHHHHHHh
Q 013943 339 -RCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG----LLGVAMDAKRIAQDIES 413 (433)
Q Consensus 339 -~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~----~~~a~~~g~~~a~~i~~ 413 (433)
+++++|.||+|+|+.|++ .+++.. +..+++|++.+| +.++|+.|+|||+|||+.. +..|+.+|..+|..|.+
T Consensus 434 ~~~i~~D~vi~a~G~~Pn~-~~l~~~-~~~~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 434 EKQLDLDGVFVQIGLVPNT-EWLKDA-VELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred EEEEEcCEEEEEeCCcCCc-hHHhhh-cccCCCCeEEEC-CCCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 458999999999999998 576655 555678999999 6788999999999999863 45899999999999998
Q ss_pred hhcc
Q 013943 414 CWKA 417 (433)
Q Consensus 414 ~l~~ 417 (433)
++.+
T Consensus 511 ~~~~ 514 (515)
T TIGR03140 511 YLIR 514 (515)
T ss_pred HHhh
Confidence 8753
No 8
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=6e-33 Score=278.70 Aligned_cols=288 Identities=18% Similarity=0.231 Sum_probs=221.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
..|||+||||||+|+++|..|++.|++++++++. +||.|.... .+..++ . ..+....++.+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-------------~~~~~~---~-~~~~~~~~l~~ 270 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-------------GIENFI---S-VPETEGPKLAA 270 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-------------cccccC---C-CCCCCHHHHHH
Confidence 4699999999999999999999999999999763 888774310 011111 0 01246788999
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCcee
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIR 191 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~ 191 (433)
++.+.+++++++++++++|++++..+ ..|.+.+.++ ..+.||.||+||| .+++.|++||...+.+..+
T Consensus 271 ~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~~~~g--------~~i~a~~vViAtG--~~~r~~~ipG~~~~~~~~v 338 (517)
T PRK15317 271 ALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVELANG--------AVLKAKTVILATG--ARWRNMNVPGEDEYRNKGV 338 (517)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEECCC--------CEEEcCEEEECCC--CCcCCCCCCCHHHhcCceE
Confidence 99999999999999999999998865 5677877665 5799999999999 6777788888777766666
Q ss_pred eccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHH
Q 013943 192 HTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLL 271 (433)
Q Consensus 192 ~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (433)
+.+...+.....+++|+|||+|++|+|+|..|+..+.+|+++.+.+. ..+. ..
T Consensus 339 ~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~-l~~~-----------~~--------------- 391 (517)
T PRK15317 339 AYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE-LKAD-----------QV--------------- 391 (517)
T ss_pred EEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc-cccc-----------HH---------------
Confidence 66655555556889999999999999999999999999999988872 1110 00
Q ss_pred HHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhh-cCCeEEecC--ceEEeCC-----eEEEc---CC--
Q 013943 272 VVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIK-SGHIRVFPG--IKRLKRY-----AVEFV---NG-- 338 (433)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--v~~~~~~-----~v~~~---~g-- 338 (433)
..+.+. ..+|+++.+ +.++.++ ++.+. ++
T Consensus 392 --------------------------------------l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~ 433 (517)
T PRK15317 392 --------------------------------------LQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEE 433 (517)
T ss_pred --------------------------------------HHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcE
Confidence 011122 247888776 6666554 24443 23
Q ss_pred cEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc----cccchhhHHHHHHHHHhh
Q 013943 339 RCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG----LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 339 ~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~----~~~a~~~g~~~a~~i~~~ 414 (433)
+++++|.|++|+|+.|++ .|++.. +..+++|++.+| +.++|+.|+|||+||++.. +..|+.+|..+|.++..+
T Consensus 434 ~~i~~D~v~~~~G~~p~~-~~l~~~-v~~~~~g~i~vd-~~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~ 510 (517)
T PRK15317 434 HHLELEGVFVQIGLVPNT-EWLKGT-VELNRRGEIIVD-ARGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDY 510 (517)
T ss_pred EEEEcCEEEEeECCccCc-hHHhhh-eeeCCCCcEEEC-cCCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHH
Confidence 358999999999999998 677665 555678999998 6778999999999999863 568999999999999888
Q ss_pred hccC
Q 013943 415 WKAK 418 (433)
Q Consensus 415 l~~~ 418 (433)
|...
T Consensus 511 l~~~ 514 (517)
T PRK15317 511 LIRN 514 (517)
T ss_pred Hhhc
Confidence 7654
No 9
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-33 Score=268.22 Aligned_cols=309 Identities=33% Similarity=0.497 Sum_probs=235.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccccc--------c-cCceeeecCCceeecCCCCCCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLK--------T-YDRLRLHLPKQFCELPLMGFPSEFPT 102 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (433)
..++|+|||||+|||++|+.|.+.|++++++||...+||.|... + |..+.++.|+..+.++++|+++..+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 46899999999999999999999999999999999999999997 5 99999999999999999999998666
Q ss_pred C-CCHHHHHHHHHHHHHHcCCc--ceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCC
Q 013943 103 Y-PSKQQFVDYLEAYAKRFEIR--PRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPE 179 (433)
Q Consensus 103 ~-~~~~~~~~~l~~~~~~~~l~--~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~ 179 (433)
+ ++..++.+||+++++++++. ++++++|..++...+ +.|.|.+.+. .+......||.|++|||++..|++|.
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~----~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDN----GTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecC----CcceeEEEeeEEEEcccCcCCCCCCc
Confidence 5 89999999999999999986 688888888887664 5899998764 11146889999999999987799999
Q ss_pred ccC--CCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC-cceecccccCCcchhhhHH
Q 013943 180 IEG--SDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT-VHVLPQEMLGKSTFGLSMW 256 (433)
Q Consensus 180 ~~g--~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~-~~~lp~~~~~~~~~~~~~~ 256 (433)
++| .+.|.|..+|+.++.....+.+|+|+|||.|+||+|++..++..+.+|++..+.+ ....+.
T Consensus 160 ~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~------------- 226 (448)
T KOG1399|consen 160 IPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPP------------- 226 (448)
T ss_pred CCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccccc-------------
Confidence 988 6689999999999999999999999999999999999999999998898886610 011110
Q ss_pred HHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecCceEEeCCeEEE-
Q 013943 257 LLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPGIKRLKRYAVEF- 335 (433)
Q Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~- 335 (433)
. ....++..++.|+.+++++..+
T Consensus 227 -------------------------------------------------------~-~~~~~~~~~~~i~~~~e~~~~~~ 250 (448)
T KOG1399|consen 227 -------------------------------------------------------E-ILGENLWQVPSIKSFTEDGSVFE 250 (448)
T ss_pred -------------------------------------------------------c-eeecceEEccccccccCcceEEE
Confidence 0 1112344444477788888555
Q ss_pred cCCcEecccEEEEccCCCCCCCCcccccc--ccccCCCCcCCCCCCCCCCCCceEEeeecc--cccccchhhHHHHHHHH
Q 013943 336 VNGRCENFDAIILATGYRSNVPSWLKESE--MFSRKDGLPRRPFPNGWKGESGLYSVGFTK--RGLLGVAMDAKRIAQDI 411 (433)
Q Consensus 336 ~~g~~~~~D~vi~atG~~~~~~~~~~~~~--l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~--~~~~~a~~~g~~~a~~i 411 (433)
+++....+|.||+||||.-.. .++...+ ...++...++...-.-....++...+|.-- .....-..|+++++.-+
T Consensus 251 ~~~~~~~~D~ii~ctgy~y~f-Pfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~ 329 (448)
T KOG1399|consen 251 KGGPVERVDRIIFCTGYKYKF-PFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVL 329 (448)
T ss_pred cCceeEEeeeEEEeeeeEeec-ceeccCCceeeccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhh
Confidence 556678899999999999988 4555553 222223233322100001123333333222 22335677778887777
Q ss_pred Hhhh
Q 013943 412 ESCW 415 (433)
Q Consensus 412 ~~~l 415 (433)
.++.
T Consensus 330 ~G~~ 333 (448)
T KOG1399|consen 330 EGRL 333 (448)
T ss_pred cCCC
Confidence 6653
No 10
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.5e-33 Score=272.40 Aligned_cols=303 Identities=18% Similarity=0.239 Sum_probs=211.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-cccccccCceeeecCCcee-ecCC----CCCCCCCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS-LWQLKTYDRLRLHLPKQFC-ELPL----MGFPSEFPTYPS 105 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~ 105 (433)
..||++|||+||+|..+|.++++.|.++.++|+...+|| +.+..+.|.-.+....... .+.. +......+ -.+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~-~id 81 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP-KID 81 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC-CcC
Confidence 579999999999999999999999999999999977777 4555555554333222211 0110 10000000 012
Q ss_pred HHHHH-----------HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 106 KQQFV-----------DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 106 ~~~~~-----------~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
..++. .....+.+..++++..++- ...++ ..+.|... + .++++++++||||| ++
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a----~f~~~-~~v~V~~~-~-------~~~~~a~~iiIATG--S~ 146 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA----RFVDP-HTVEVTGE-D-------KETITADNIIIATG--SR 146 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE----EECCC-CEEEEcCC-C-------ceEEEeCEEEEcCC--CC
Confidence 22222 2233344455666544421 11111 34334332 1 37999999999999 99
Q ss_pred CccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhh
Q 013943 175 AVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLS 254 (433)
Q Consensus 175 p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~ 254 (433)
|..|++++.+.. ....+....... .-+++++|||+|.+|+|+|..++++|.+||++.|++ ++||.++.
T Consensus 147 p~~~~~~~~~~~--~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~-------- 214 (454)
T COG1249 147 PRIPPGPGIDGA--RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDP-------- 214 (454)
T ss_pred CcCCCCCCCCCC--eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCH--------
Confidence 999988887642 123333323333 678899999999999999999999999999999999 88886654
Q ss_pred HHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC-
Q 013943 255 MWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY- 331 (433)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~- 331 (433)
.+...+.+.+++++++++.+ +..+..+
T Consensus 215 --------------------------------------------------ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~ 244 (454)
T COG1249 215 --------------------------------------------------EISKELTKQLEKGGVKILLNTKVTAVEKKD 244 (454)
T ss_pred --------------------------------------------------HHHHHHHHHHHhCCeEEEccceEEEEEecC
Confidence 12223335566677888877 5555433
Q ss_pred ---eEEEcCCc--EecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchh
Q 013943 332 ---AVEFVNGR--CENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAM 402 (433)
Q Consensus 332 ---~v~~~~g~--~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~ 402 (433)
.+.+++++ ++++|.|++|+|.+||++.+ ++..++..|++|++.+| .+++|+.|+|||+||+..+ +..|.+
T Consensus 245 ~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah~A~~ 323 (454)
T COG1249 245 DGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMA 323 (454)
T ss_pred CeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHhHHHH
Confidence 26667776 68999999999999999766 44558988888999999 7888889999999999765 457999
Q ss_pred hHHHHHHHHHh
Q 013943 403 DAKRIAQDIES 413 (433)
Q Consensus 403 ~g~~~a~~i~~ 413 (433)
+|+.+|++|.+
T Consensus 324 eg~iaa~~i~g 334 (454)
T COG1249 324 EGRIAAENIAG 334 (454)
T ss_pred HHHHHHHHHhC
Confidence 99999999997
No 11
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=3.3e-32 Score=274.93 Aligned_cols=288 Identities=19% Similarity=0.241 Sum_probs=210.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.+|||+||||||||+++|..|++.|++|+|+|++ .+||.+.... .+..++. .......++.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~-------------~i~~~pg----~~~~~~~~l~~ 64 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS-------------EVVNYPG----ILNTTGPELMQ 64 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc-------------ccccCCC----CcCCCHHHHHH
Confidence 5799999999999999999999999999999996 5777643210 0001110 01235678889
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCcee
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIR 191 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~ 191 (433)
++.+.++++++++. +++|+.++..+ ..+.+.+.+ ..+.++.||+||| ++|+.|+++|.+.+.+..+
T Consensus 65 ~l~~~~~~~gv~~~-~~~V~~i~~~~--~~~~V~~~~---------g~~~a~~lVlATG--a~p~~~~ipG~~~~~~~~v 130 (555)
T TIGR03143 65 EMRQQAQDFGVKFL-QAEVLDVDFDG--DIKTIKTAR---------GDYKTLAVLIATG--ASPRKLGFPGEEEFTGRGV 130 (555)
T ss_pred HHHHHHHHcCCEEe-ccEEEEEEecC--CEEEEEecC---------CEEEEeEEEECCC--CccCCCCCCCHHHhCCceE
Confidence 99998988898864 67888888755 456666654 3578999999999 7788888998765555555
Q ss_pred eccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHH
Q 013943 192 HTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLL 271 (433)
Q Consensus 192 ~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 271 (433)
+.+...+...+.+++++|||+|++|+|+|..|.+.|.+|+++.|.+. .... ....
T Consensus 131 ~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~-~~~~-------------------~~~~----- 185 (555)
T TIGR03143 131 AYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD-FTCA-------------------KLIA----- 185 (555)
T ss_pred EEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc-cccC-------------------HHHH-----
Confidence 55555554556789999999999999999999999999999999872 1100 0000
Q ss_pred HHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCe----EEE---cCCcE--
Q 013943 272 VVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYA----VEF---VNGRC-- 340 (433)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~----v~~---~~g~~-- 340 (433)
.+.+...+|+++.+ +.++.+++ +.+ .+|++
T Consensus 186 ---------------------------------------~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~ 226 (555)
T TIGR03143 186 ---------------------------------------EKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITE 226 (555)
T ss_pred ---------------------------------------HHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEE
Confidence 01122346777765 66776542 222 34654
Q ss_pred --ecccE----EEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeeccc----ccccchhhHHHHHHH
Q 013943 341 --ENFDA----IILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKR----GLLGVAMDAKRIAQD 410 (433)
Q Consensus 341 --~~~D~----vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~----~~~~a~~~g~~~a~~ 410 (433)
+++|. ||+|+|+.|+. .+++. ++..+++|++.+| +.++|+.|+|||+|||+. .+..|..+|+.+|.+
T Consensus 227 ~~~~~D~~~~~Vi~a~G~~Pn~-~l~~~-~l~l~~~G~I~vd-~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~ 303 (555)
T TIGR03143 227 YKAPKDAGTFGVFVFVGYAPSS-ELFKG-VVELDKRGYIPTN-EDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATS 303 (555)
T ss_pred EeccccccceEEEEEeCCCCCh-hHHhh-hcccCCCCeEEeC-CccccCCCCEEEceeccCCCcchheeHHhhHHHHHHH
Confidence 24676 99999999998 56654 4555678999998 678889999999999974 255799999999999
Q ss_pred HHhhhccC
Q 013943 411 IESCWKAK 418 (433)
Q Consensus 411 i~~~l~~~ 418 (433)
|.+++...
T Consensus 304 i~~~l~~~ 311 (555)
T TIGR03143 304 AERYVKEL 311 (555)
T ss_pred HHHHHHhh
Confidence 99888753
No 12
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.6e-32 Score=270.98 Aligned_cols=297 Identities=16% Similarity=0.252 Sum_probs=198.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccccCceeeecCCce----eecCCCCCC------CCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW-QLKTYDRLRLHLPKQF----CELPLMGFP------SEFP 101 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~ 101 (433)
.|||+||||||+|+++|..+++.|.+|+|+|+. .+||.+ ...+.|.-.+...... .....+..+ .+++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 589999999999999999999999999999996 578854 3344443211111000 000111110 0111
Q ss_pred CCC-CHHHH----HHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 102 TYP-SKQQF----VDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 102 ~~~-~~~~~----~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
... ..+++ .+.+...+.+.+++++.++.+. ..+ .. |... + ..+.||+||+||| ++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~----~~~-~~--v~v~-~--------~~~~~d~vIiAtG--s~p~ 142 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF----TKD-GT--VEVN-G--------RDYTAPHILIATG--GKPS 142 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE----ccC-CE--EEEC-C--------EEEEeCEEEEecC--CCCC
Confidence 101 11222 2234445556677777765431 111 33 4332 2 5799999999999 8888
Q ss_pred cC-CccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhH
Q 013943 177 VP-EIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSM 255 (433)
Q Consensus 177 ~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~ 255 (433)
.| ++||.+. ...+.... .....+++++|||+|.+|+|+|..|++.|.+||++.|.+ .+++..+.
T Consensus 143 ~p~~i~g~~~----~~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~--------- 207 (450)
T TIGR01421 143 FPENIPGAEL----GTDSDGFF-ALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDS--------- 207 (450)
T ss_pred CCCCCCCCce----eEcHHHhh-CccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCH---------
Confidence 88 7887642 11111111 122346899999999999999999999999999999987 55553221
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC--
Q 013943 256 WLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY-- 331 (433)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-- 331 (433)
. ....+.+.+++.+|+++.+ +.++..+
T Consensus 208 --------~-----------------------------------------~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~ 238 (450)
T TIGR01421 208 --------M-----------------------------------------ISETITEEYEKEGINVHKLSKPVKVEKTVE 238 (450)
T ss_pred --------H-----------------------------------------HHHHHHHHHHHcCCEEEcCCEEEEEEEeCC
Confidence 0 1111224455678888876 6666532
Q ss_pred ---eEEEcCC-cEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhh
Q 013943 332 ---AVEFVNG-RCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMD 403 (433)
Q Consensus 332 ---~v~~~~g-~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~ 403 (433)
.+.++++ +++++|.||+|+|+.||...+ ++..++..+++|++.+| ++++|+.|+|||+|||+.. +..|..+
T Consensus 239 ~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~T~~p~IyAiGD~~~~~~~~~~A~~~ 317 (450)
T TIGR01421 239 GKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVD-EYQNTNVPGIYALGDVVGKVELTPVAIAA 317 (450)
T ss_pred ceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeC-CCCcCCCCCEEEEEecCCCcccHHHHHHH
Confidence 2556677 569999999999999998433 45567777788999999 6788999999999999864 4478999
Q ss_pred HHHHHHHHHh
Q 013943 404 AKRIAQDIES 413 (433)
Q Consensus 404 g~~~a~~i~~ 413 (433)
|+.+|++|.+
T Consensus 318 g~~aa~~i~~ 327 (450)
T TIGR01421 318 GRKLSERLFN 327 (450)
T ss_pred HHHHHHHHhc
Confidence 9999999974
No 13
>PLN02507 glutathione reductase
Probab=100.00 E-value=1.6e-32 Score=273.45 Aligned_cols=306 Identities=16% Similarity=0.115 Sum_probs=203.0
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEec---------CCCCCCccc-ccccCceeeecCCcee----ecCCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLER---------SNCIASLWQ-LKTYDRLRLHLPKQFC----ELPLMGF 96 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~---------~~~~gg~w~-~~~~~~~~~~~~~~~~----~~~~~~~ 96 (433)
.-.|||+||||||+|+.+|..+.+.|.+|+|+|+ ...+||.+. ..++|.-.+.....+. ....+.+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 3469999999999999999999999999999996 346888653 3455543321111110 0000000
Q ss_pred CCCCCCCCCHHHHH-----------HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEE
Q 013943 97 PSEFPTYPSKQQFV-----------DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWL 165 (433)
Q Consensus 97 ~~~~~~~~~~~~~~-----------~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~v 165 (433)
......-.....+. ..+.+++...++++..+ +++.++. ..++|+..+| +...+.||+|
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~g------~~~~~~~d~L 171 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLDG------TKLRYTAKHI 171 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCCC------cEEEEEcCEE
Confidence 00000011222222 22333444456665444 3444432 4566766543 1246899999
Q ss_pred EEccCCCCCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccc
Q 013943 166 VVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEM 245 (433)
Q Consensus 166 iiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~ 245 (433)
|+||| ++|..|++||.+.. .+..........+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++..+
T Consensus 172 IIATG--s~p~~p~ipG~~~~-----~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~~l~~~d 243 (499)
T PLN02507 172 LIATG--SRAQRPNIPGKELA-----ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-LPLRGFD 243 (499)
T ss_pred EEecC--CCCCCCCCCCccce-----echHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-CcCcccC
Confidence 99999 88888888885421 1111111122347899999999999999999999999999999887 4444321
Q ss_pred cCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC-
Q 013943 246 LGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG- 324 (433)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 324 (433)
. .. ...+.+.+++.+|+++.+
T Consensus 244 ~-----------------~~-----------------------------------------~~~l~~~l~~~GI~i~~~~ 265 (499)
T PLN02507 244 D-----------------EM-----------------------------------------RAVVARNLEGRGINLHPRT 265 (499)
T ss_pred H-----------------HH-----------------------------------------HHHHHHHHHhCCCEEEeCC
Confidence 1 00 111123455567888876
Q ss_pred -ceEEeC--Ce--EEEcCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc--
Q 013943 325 -IKRLKR--YA--VEFVNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-- 396 (433)
Q Consensus 325 -v~~~~~--~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-- 396 (433)
+.++.. ++ +.+.+|+++++|.||+|+|+.|+...+ +++.++..+++|++.+| ++++|+.|+|||+|||+..
T Consensus 266 ~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd-~~~~Ts~p~IyAiGDv~~~~~ 344 (499)
T PLN02507 266 NLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVD-EYSRTNIPSIWAIGDVTNRIN 344 (499)
T ss_pred EEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecC-CCCcCCCCCEEEeeEcCCCCc
Confidence 666653 33 455678889999999999999998433 45667776778999999 6788999999999999964
Q ss_pred -cccchhhHHHHHHHHHhh
Q 013943 397 -LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 397 -~~~a~~~g~~~a~~i~~~ 414 (433)
...|..+|+.+|++|.+.
T Consensus 345 l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 345 LTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred cHHHHHHHHHHHHHHHcCC
Confidence 447899999999999753
No 14
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.8e-32 Score=272.84 Aligned_cols=303 Identities=14% Similarity=0.100 Sum_probs=205.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc-cccCceeeecCCc-ee------ecCCCCCCCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL-KTYDRLRLHLPKQ-FC------ELPLMGFPSEFPTY 103 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~ 103 (433)
..|||+||||||+|+++|..|++.|.+|++||+.+.+||.|.. .+.+...+..... +. .+..+..+ ..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~----~~ 79 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK----LR 79 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc----Cc
Confidence 4699999999999999999999999999999998889997643 3333221111000 00 00001111 11
Q ss_pred CCHHHHH-----------HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCC
Q 013943 104 PSKQQFV-----------DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGEN 172 (433)
Q Consensus 104 ~~~~~~~-----------~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~ 172 (433)
.+..++. +++.+.+.+.+++++.+. +..++ . ..+++...++ +...+.||+||+|||
T Consensus 80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~--~~~~v~~~~g------~~~~~~~d~lviATG-- 146 (461)
T PRK05249 80 ITFADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD--P--HTVEVECPDG------EVETLTADKIVIATG-- 146 (461)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec--C--CEEEEEeCCC------ceEEEEcCEEEEcCC--
Confidence 2333333 334445566677766553 33332 2 4566665543 124799999999999
Q ss_pred CCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchh
Q 013943 173 AEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFG 252 (433)
Q Consensus 173 ~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~ 252 (433)
++|..|++++... ..++.+.........+++++|||+|.+|+|+|..|++.|.+|+++.+++ +++|..+.
T Consensus 147 s~p~~p~~~~~~~---~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~------ 216 (461)
T PRK05249 147 SRPYRPPDVDFDH---PRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDD------ 216 (461)
T ss_pred CCCCCCCCCCCCC---CeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCH------
Confidence 8888887655432 2223322222223457899999999999999999999999999999988 55553221
Q ss_pred hhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe-
Q 013943 253 LSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK- 329 (433)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~- 329 (433)
... ..+.+.+++.+|+++.+ +.++.
T Consensus 217 -----------~~~-----------------------------------------~~l~~~l~~~gI~v~~~~~v~~i~~ 244 (461)
T PRK05249 217 -----------EIS-----------------------------------------DALSYHLRDSGVTIRHNEEVEKVEG 244 (461)
T ss_pred -----------HHH-----------------------------------------HHHHHHHHHcCCEEEECCEEEEEEE
Confidence 111 11123355567888766 66665
Q ss_pred -CCe--EEEcCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchh
Q 013943 330 -RYA--VEFVNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAM 402 (433)
Q Consensus 330 -~~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~ 402 (433)
+++ +.+.+|+++++|.||+|+|+.||...+ +...++..+++|++.+| +.++|+.|+|||+|||+.. ...|..
T Consensus 245 ~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~t~~~~IyAiGD~~~~~~~~~~A~~ 323 (461)
T PRK05249 245 GDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVN-ENYQTAVPHIYAVGDVIGFPSLASASMD 323 (461)
T ss_pred eCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeC-CCcccCCCCEEEeeecCCCcccHhHHHH
Confidence 333 445678889999999999999998433 45557776788999999 6788999999999999854 447899
Q ss_pred hHHHHHHHHHhh
Q 013943 403 DAKRIAQDIESC 414 (433)
Q Consensus 403 ~g~~~a~~i~~~ 414 (433)
+|+.+|++|.+.
T Consensus 324 ~g~~aa~~i~g~ 335 (461)
T PRK05249 324 QGRIAAQHAVGE 335 (461)
T ss_pred HHHHHHHHHcCC
Confidence 999999999853
No 15
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.2e-32 Score=271.40 Aligned_cols=285 Identities=19% Similarity=0.245 Sum_probs=199.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCC-CCHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKER--GIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTY-PSKQQF 109 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 109 (433)
|.+|+|||||++|+.+|..|++. +.+|+|+|+++.++ |.... ++.+ ..+. ....+.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~~~~--------------lp~~-----~~~~~~~~~~~ 59 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FANCA--------------LPYY-----IGEVVEDRKYA 59 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cccCC--------------cchh-----hcCccCCHHHc
Confidence 45899999999999999999987 57999999998543 11100 0000 0011 112222
Q ss_pred HHHH-HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCC
Q 013943 110 VDYL-EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGG 188 (433)
Q Consensus 110 ~~~l-~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~ 188 (433)
..+. ..+.++.+++++.+++|++++.++ +.+.+...+ .++...+.||+||+||| ++|+.|++++..
T Consensus 60 ~~~~~~~~~~~~~i~v~~~~~V~~Id~~~--~~v~~~~~~-----~~~~~~~~yd~lviAtG--s~~~~~~~~~~~---- 126 (438)
T PRK13512 60 LAYTPEKFYDRKQITVKTYHEVIAINDER--QTVTVLNRK-----TNEQFEESYDKLILSPG--ASANSLGFESDI---- 126 (438)
T ss_pred ccCCHHHHHHhCCCEEEeCCEEEEEECCC--CEEEEEECC-----CCcEEeeecCEEEECCC--CCCCCCCCCCCC----
Confidence 2222 234456789999999999999876 554444321 11234679999999999 888877654321
Q ss_pred ceeeccCCCCC-------CCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhc
Q 013943 189 DIRHTSLYKSG-------EDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWL 261 (433)
Q Consensus 189 ~~~~~~~~~~~-------~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l 261 (433)
.+......+. ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ ++++..+.
T Consensus 127 -~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~--------------- 189 (438)
T PRK13512 127 -TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDA--------------- 189 (438)
T ss_pred -eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCH---------------
Confidence 1111111110 12246899999999999999999999999999999987 44442211
Q ss_pred chHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCeEEEcCCc
Q 013943 262 PMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYAVEFVNGR 339 (433)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~v~~~~g~ 339 (433)
. ....+.+.+++.+|+++.+ +.+++...+.+.+|+
T Consensus 190 --~-----------------------------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~~v~~~~g~ 226 (438)
T PRK13512 190 --D-----------------------------------------MNQPILDELDKREIPYRLNEEIDAINGNEVTFKSGK 226 (438)
T ss_pred --H-----------------------------------------HHHHHHHHHHhcCCEEEECCeEEEEeCCEEEECCCC
Confidence 0 1111224466678888876 888887788888898
Q ss_pred EecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc-------------cccchhhHHH
Q 013943 340 CENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-------------LLGVAMDAKR 406 (433)
Q Consensus 340 ~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-------------~~~a~~~g~~ 406 (433)
++++|.|++|+|+.||. .++++.++..+++|++.+| ++++++.|+|||+|||+.. ...|..+|+.
T Consensus 227 ~~~~D~vl~a~G~~pn~-~~l~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~ 304 (438)
T PRK13512 227 VEHYDMIIEGVGTHPNS-KFIESSNIKLDDKGFIPVN-DKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASI 304 (438)
T ss_pred EEEeCEEEECcCCCcCh-HHHHhcCcccCCCCcEEEC-CCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHH
Confidence 99999999999999998 5777778777678999898 6778999999999999841 2246778888
Q ss_pred HHHHHHh
Q 013943 407 IAQDIES 413 (433)
Q Consensus 407 ~a~~i~~ 413 (433)
+|++|.+
T Consensus 305 ~a~ni~g 311 (438)
T PRK13512 305 VAEQIAG 311 (438)
T ss_pred HHHHhcC
Confidence 9999875
No 16
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=8.3e-32 Score=266.17 Aligned_cols=300 Identities=14% Similarity=0.130 Sum_probs=202.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc-ccccCceeeecCCcee----ecCCCCCC-----CCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ-LKTYDRLRLHLPKQFC----ELPLMGFP-----SEFPT 102 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~ 102 (433)
.|||+||||||+|+++|..+++.|++|+|+|+. .+||... ..+.|.-.+..+.... ....+... -++..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 489999999999999999999999999999995 6888543 3344432211111000 00001000 01100
Q ss_pred CC-----CHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 103 YP-----SKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 103 ~~-----~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
.. ...++.++++..+++.++++..+ ++..++. ..+.+. .++ ..+.||+||+||| ++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~----~~v~v~-~~g--------~~~~~d~lIiATG--s~p~~ 144 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP----NTVEVL-QDG--------TTYTAKKILIAVG--GRPQK 144 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEe-cCC--------eEEEcCEEEEecC--CcCCC
Confidence 00 11234455556666778887655 5655543 233343 233 5799999999999 88988
Q ss_pred CCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHH
Q 013943 178 PEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWL 257 (433)
Q Consensus 178 p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~ 257 (433)
|++||.+. ...+.... .....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ .+++..+.
T Consensus 145 p~i~G~~~----~~~~~~~~-~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~----------- 207 (446)
T TIGR01424 145 PNLPGHEL----GITSNEAF-HLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDD----------- 207 (446)
T ss_pred CCCCCccc----eechHHhh-cccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCH-----------
Confidence 88888642 11111111 112347899999999999999999999999999999887 44442211
Q ss_pred HhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC--Ce-
Q 013943 258 LKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR--YA- 332 (433)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~- 332 (433)
... ..+.+.+.+.+|+++.+ +.+++. ++
T Consensus 208 ------~~~-----------------------------------------~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~ 240 (446)
T TIGR01424 208 ------DMR-----------------------------------------ALLARNMEGRGIRIHPQTSLTSITKTDDGL 240 (446)
T ss_pred ------HHH-----------------------------------------HHHHHHHHHCCCEEEeCCEEEEEEEcCCeE
Confidence 000 11123355567888876 666653 23
Q ss_pred -EEEcCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhHHHH
Q 013943 333 -VEFVNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDAKRI 407 (433)
Q Consensus 333 -v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g~~~ 407 (433)
+.+.+++++++|.||+|+|+.|+...+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...|..+|+.+
T Consensus 241 ~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~ 319 (446)
T TIGR01424 241 KVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVD-EYSRTSIPSIYAVGDVTDRINLTPVAIMEATCF 319 (446)
T ss_pred EEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeC-CCCccCCCCEEEeeccCCCccchhHHHHHHHHH
Confidence 555678889999999999999998433 45567766678999999 6788999999999999964 45789999999
Q ss_pred HHHHHhh
Q 013943 408 AQDIESC 414 (433)
Q Consensus 408 a~~i~~~ 414 (433)
|++|.+.
T Consensus 320 a~~i~~~ 326 (446)
T TIGR01424 320 ANTEFGN 326 (446)
T ss_pred HHHHhcC
Confidence 9999863
No 17
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=3e-32 Score=270.18 Aligned_cols=299 Identities=17% Similarity=0.197 Sum_probs=200.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc-ccccCceeeecCCcee----e-cCCCCCC-----CCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ-LKTYDRLRLHLPKQFC----E-LPLMGFP-----SEF 100 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~~----~-~~~~~~~-----~~~ 100 (433)
..|||+||||||+|+++|..|++.|++|+|+|+. .+||.+. ..++|.-.+.....+. . ...+.+. .++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW 81 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence 3699999999999999999999999999999996 6888643 3333332111110000 0 0000000 011
Q ss_pred CCCC-----CHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 101 PTYP-----SKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 101 ~~~~-----~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
.... ....+.+.+.+.+.+.++++..+ +++.++ . .. |++ ++ ..+.||+||+||| ++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~--~~--v~~-~g--------~~~~~d~lViATG--s~p 143 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--A--HT--VEV-NG--------ERYTADHILIATG--GRP 143 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--C--CE--EEE-CC--------EEEEeCEEEEecC--CCC
Confidence 1000 01122233344455667777665 344442 1 23 444 44 6799999999999 889
Q ss_pred ccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhH
Q 013943 176 VVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSM 255 (433)
Q Consensus 176 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~ 255 (433)
..|+++|.+. ..+...... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ ++++..+.
T Consensus 144 ~~p~i~g~~~----~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~--------- 208 (450)
T PRK06116 144 SIPDIPGAEY----GITSDGFFA-LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDP--------- 208 (450)
T ss_pred CCCCCCCcce----eEchhHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCH---------
Confidence 9998888642 222222221 22346899999999999999999999999999999887 34332111
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC--C
Q 013943 256 WLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR--Y 331 (433)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~ 331 (433)
. ....+.+.+++.+|+++.+ +.++.. +
T Consensus 209 --------~-----------------------------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~ 239 (450)
T PRK06116 209 --------D-----------------------------------------IRETLVEEMEKKGIRLHTNAVPKAVEKNAD 239 (450)
T ss_pred --------H-----------------------------------------HHHHHHHHHHHCCcEEECCCEEEEEEEcCC
Confidence 0 1111123455678888876 677753 2
Q ss_pred ---eEEEcCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhH
Q 013943 332 ---AVEFVNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDA 404 (433)
Q Consensus 332 ---~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g 404 (433)
.+.+.+|+++++|.||+|+|+.|+...+ ++..++..+++|++.+| ++++|+.|+|||+|||+.. ...|..+|
T Consensus 240 g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g 318 (450)
T PRK06116 240 GSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGRVELTPVAIAAG 318 (450)
T ss_pred ceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecC-CCCCcCCCCEEEEeecCCCcCcHHHHHHHH
Confidence 2566788889999999999999998533 45557777788999999 6788999999999999854 44789999
Q ss_pred HHHHHHHHhh
Q 013943 405 KRIAQDIESC 414 (433)
Q Consensus 405 ~~~a~~i~~~ 414 (433)
+.+|++|.+.
T Consensus 319 ~~aa~~i~g~ 328 (450)
T PRK06116 319 RRLSERLFNN 328 (450)
T ss_pred HHHHHHHhCC
Confidence 9999999863
No 18
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.1e-32 Score=257.80 Aligned_cols=288 Identities=20% Similarity=0.206 Sum_probs=214.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERG--IPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQF 109 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
++++|||||||++|+.+|..|.++. .+|++||+++.+- | ..+. .+...+..+..++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl--~-----~plL---------------~eva~g~l~~~~i 59 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL--F-----TPLL---------------YEVATGTLSESEI 59 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc--c-----chhh---------------hhhhcCCCChhhe
Confidence 4688999999999999999999975 8999999998331 1 1000 0011233445556
Q ss_pred HHHHHHHHHHcC-CcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCC
Q 013943 110 VDYLEAYAKRFE-IRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGG 188 (433)
Q Consensus 110 ~~~l~~~~~~~~-l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~ 188 (433)
.-.++..++..+ +++..+ +|++|+.++ +. |++.++ ..+.||+||+|+| +.+..+.+||..++..
T Consensus 60 ~~p~~~~~~~~~~v~~~~~-~V~~ID~~~--k~--V~~~~~--------~~i~YD~LVvalG--s~~~~fgi~G~~E~a~ 124 (405)
T COG1252 60 AIPLRALLRKSGNVQFVQG-EVTDIDRDA--KK--VTLADL--------GEISYDYLVVALG--SETNYFGIPGAAEYAF 124 (405)
T ss_pred eccHHHHhcccCceEEEEE-EEEEEcccC--CE--EEeCCC--------ccccccEEEEecC--CcCCcCCCCCHHHhCC
Confidence 666666666444 555444 799999987 44 666664 6899999999999 8899888998765432
Q ss_pred ceeec--c-C----------CCC-CCC-CCCCeEEEECCCCcHHHHHHHHhccC-------------CCcEEEEecCcce
Q 013943 189 DIRHT--S-L----------YKS-GED-FRGKRVLVVGCGNSGMEVCLDLCNHD-------------AMPSLVVRDTVHV 240 (433)
Q Consensus 189 ~~~~~--~-~----------~~~-~~~-~~~~~v~VvG~G~~a~e~a~~l~~~g-------------~~Vtl~~r~~~~~ 240 (433)
..-.. . . ..+ ... ..-.+++|+|||++|+|+|.+|.+.. .+|+|+.+.| ++
T Consensus 125 ~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~I 203 (405)
T COG1252 125 GLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-RI 203 (405)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-hh
Confidence 11100 0 0 000 000 01237999999999999999998642 1789999999 78
Q ss_pred ecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeE
Q 013943 241 LPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIR 320 (433)
Q Consensus 241 lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 320 (433)
||.... . ++....+.+++.+|+
T Consensus 204 Lp~~~~-----------------~-----------------------------------------l~~~a~~~L~~~GV~ 225 (405)
T COG1252 204 LPMFPP-----------------K-----------------------------------------LSKYAERALEKLGVE 225 (405)
T ss_pred ccCCCH-----------------H-----------------------------------------HHHHHHHHHHHCCCE
Confidence 875432 1 122223557778999
Q ss_pred EecC--ceEEeCCeEEEcCCcE-ecccEEEEccCCCCCCCCccccc-cccccCCCCcCCCCCCCCCCCCceEEeeecccc
Q 013943 321 VFPG--IKRLKRYAVEFVNGRC-ENFDAIILATGYRSNVPSWLKES-EMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG 396 (433)
Q Consensus 321 ~~~~--v~~~~~~~v~~~~g~~-~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~ 396 (433)
+..+ |+++++++|++++|++ +++|.+|||+|.+++. +.+++ ++..|..|++++++.++..+.|+||++|||+..
T Consensus 226 v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~--~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~ 303 (405)
T COG1252 226 VLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASP--LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAV 303 (405)
T ss_pred EEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCCh--hhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccC
Confidence 9987 9999999999999985 9999999999999995 78884 777778899999977888899999999999943
Q ss_pred ---------cccchhhHHHHHHHHHhhhcc
Q 013943 397 ---------LLGVAMDAKRIAQDIESCWKA 417 (433)
Q Consensus 397 ---------~~~a~~~g~~~a~~i~~~l~~ 417 (433)
+..|..+|..+|++|.++++.
T Consensus 304 ~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 304 IDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 236899999999999999987
No 19
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=8.5e-32 Score=267.70 Aligned_cols=302 Identities=18% Similarity=0.191 Sum_probs=197.9
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccccCceeeecCCcee----ecCCCCCCCCCCCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW-QLKTYDRLRLHLPKQFC----ELPLMGFPSEFPTYPS 105 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 105 (433)
+..|||+||||||+|+++|..|++.|++|+|+|+. .+||.+ ...+.|.-.+....... ....+.++........
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD 81 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence 35699999999999999999999999999999997 466643 33333331111000000 0000000000000112
Q ss_pred HHHHH-----------HHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 106 KQQFV-----------DYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 106 ~~~~~-----------~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
...+. ..+..++++. +++++.++.+. .+. .. +... + ..+.||+||+||| +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~--~~--v~v~-~--------~~~~~d~lViATG--s 143 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESP--NT--VRVG-G--------ETLRAKRIFINTG--A 143 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccC--CE--EEEC-c--------EEEEeCEEEEcCC--C
Confidence 22222 2233344444 67766665431 111 33 4332 2 5789999999999 8
Q ss_pred CCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhh
Q 013943 174 EAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGL 253 (433)
Q Consensus 174 ~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~ 253 (433)
+|..|++||.+.. ..+......+ ....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ ++++..+. .
T Consensus 144 ~p~~p~i~G~~~~--~~~~~~~~~~-~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~-----~- 213 (463)
T PRK06370 144 RAAIPPIPGLDEV--GYLTNETIFS-LDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDE-----D- 213 (463)
T ss_pred CCCCCCCCCCCcC--ceEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCH-----H-
Confidence 8999999987542 1222222222 22457899999999999999999999999999999988 55553221 0
Q ss_pred hHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC
Q 013943 254 SMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY 331 (433)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~ 331 (433)
....+.+.+++.+|+++.+ +.++..+
T Consensus 214 ----------------------------------------------------~~~~l~~~l~~~GV~i~~~~~V~~i~~~ 241 (463)
T PRK06370 214 ----------------------------------------------------VAAAVREILEREGIDVRLNAECIRVERD 241 (463)
T ss_pred ----------------------------------------------------HHHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence 0011123455567888876 6677542
Q ss_pred --e--EEEc---CCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccc
Q 013943 332 --A--VEFV---NGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGV 400 (433)
Q Consensus 332 --~--v~~~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a 400 (433)
+ +.+. +++++++|.||+|+|+.|+...+ ++..++..+++|++.+| ++++|+.|+|||+|||+.. ...|
T Consensus 242 ~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd-~~l~t~~~~IyAiGD~~~~~~~~~~A 320 (463)
T PRK06370 242 GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD-DQLRTTNPGIYAAGDCNGRGAFTHTA 320 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC-cCCcCCCCCEEEeeecCCCcccHHHH
Confidence 2 3332 34579999999999999998435 55567777788999998 6788999999999999964 3478
Q ss_pred hhhHHHHHHHHHhh
Q 013943 401 AMDAKRIAQDIESC 414 (433)
Q Consensus 401 ~~~g~~~a~~i~~~ 414 (433)
..+|+.+|++|.+.
T Consensus 321 ~~~g~~aa~ni~~~ 334 (463)
T PRK06370 321 YNDARIVAANLLDG 334 (463)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999864
No 20
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1e-31 Score=265.73 Aligned_cols=298 Identities=17% Similarity=0.204 Sum_probs=198.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC-CCCCcccc-cccCceeeecCCceeecCCCCCCCCCCC-CCCHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSN-CIASLWQL-KTYDRLRLHLPKQFCELPLMGFPSEFPT-YPSKQQF 109 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~-~~gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 109 (433)
.|||+||||||+|+++|..|++.|++|+|+|+.+ .+||.|.. .+.+...+..+.. . ...+.. ....+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~----~----~~~~~~~~~~~~~~ 74 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ----Q----HTDFVRAIQRKNEV 74 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc----c----CCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999976 47887643 2222211100000 0 001100 0112223
Q ss_pred HHHHHH-----HHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCC
Q 013943 110 VDYLEA-----YAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSD 184 (433)
Q Consensus 110 ~~~l~~-----~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~ 184 (433)
.+++.. +.+..++++..+ ++..++. +.+.|...++ ...+.||+||+||| ++|..|++||.+
T Consensus 75 ~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~----~~~~v~~~~g-------~~~~~~d~lviATG--s~p~~p~i~G~~ 140 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNIDVIDG-QAEFINN----HSLRVHRPEG-------NLEIHGEKIFINTG--AQTVVPPIPGIT 140 (441)
T ss_pred HHHHHHhHHHHHhhcCCcEEEEE-EEEEecC----CEEEEEeCCC-------eEEEEeCEEEEcCC--CcCCCCCCCCcc
Confidence 333321 112225555443 3444432 4566666554 24699999999999 888889999875
Q ss_pred CCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchH
Q 013943 185 EFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMR 264 (433)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~ 264 (433)
...+ +..+.... .....+++++|||+|.+|+|+|..|.+.|.+|+++.+++ +++|..+. ..
T Consensus 141 ~~~~-v~~~~~~~-~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~----------- 201 (441)
T PRK08010 141 TTPG-VYDSTGLL-NLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDR-----DI----------- 201 (441)
T ss_pred CCCC-EEChhHhh-cccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCH-----HH-----------
Confidence 4433 22222222 233457899999999999999999999999999999987 56554321 00
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC--CeEEEc-CCc
Q 013943 265 LVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR--YAVEFV-NGR 339 (433)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~v~~~-~g~ 339 (433)
...+.+.+++.+|+++.+ +.+++. +.+.+. ++.
T Consensus 202 ------------------------------------------~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g 239 (441)
T PRK08010 202 ------------------------------------------ADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA 239 (441)
T ss_pred ------------------------------------------HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC
Confidence 011124456678888866 667653 234332 234
Q ss_pred EecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhHHHHHHHHHhh
Q 013943 340 CENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 340 ~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g~~~a~~i~~~ 414 (433)
++++|.|++|+|..||...+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...|..+|+.++++|.+.
T Consensus 240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVD-KYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 58999999999999998432 34557766678999999 6788999999999999974 446888999999998753
No 21
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=4.7e-32 Score=266.00 Aligned_cols=300 Identities=15% Similarity=0.154 Sum_probs=207.0
Q ss_pred CCCccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCH
Q 013943 27 SPRCICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSK 106 (433)
Q Consensus 27 ~~~~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
.++...+++|||||||++|+.+|..|.+.+.+|++||+++.+- |..+ + +....+....
T Consensus 4 ~~~~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~----------l-----~~~~~g~~~~ 61 (424)
T PTZ00318 4 RTARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL----------L-----PQTTTGTLEF 61 (424)
T ss_pred cccCCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh----------H-----HHhcccCCCh
Confidence 3555677899999999999999999987778999999987431 1000 0 0011112233
Q ss_pred HHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCC
Q 013943 107 QQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEF 186 (433)
Q Consensus 107 ~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~ 186 (433)
+++...+...+...++++ ...+|++|+.++ +.+.+...+.+.........+.||+||+||| +.+..|.+||...+
T Consensus 62 ~~~~~~~~~~~~~~~~~~-i~~~V~~Id~~~--~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG--s~~~~~~ipG~~e~ 136 (424)
T PTZ00318 62 RSICEPVRPALAKLPNRY-LRAVVYDVDFEE--KRVKCGVVSKSNNANVNTFSVPYDKLVVAHG--ARPNTFNIPGVEER 136 (424)
T ss_pred HHhHHHHHHHhccCCeEE-EEEEEEEEEcCC--CEEEEecccccccccCCceEecCCEEEECCC--cccCCCCCCCHHHc
Confidence 444545566666666654 456899999876 5554532110000001125799999999999 78888888886532
Q ss_pred CCceeeccCCCC---------------------C-CCCCCCeEEEECCCCcHHHHHHHHhc--------------cCCCc
Q 013943 187 GGDIRHTSLYKS---------------------G-EDFRGKRVLVVGCGNSGMEVCLDLCN--------------HDAMP 230 (433)
Q Consensus 187 ~~~~~~~~~~~~---------------------~-~~~~~~~v~VvG~G~~a~e~a~~l~~--------------~g~~V 230 (433)
. ...+.+.+ . .....++++|||+|++|+|+|..|++ .+.+|
T Consensus 137 ~---~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~V 213 (424)
T PTZ00318 137 A---FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKV 213 (424)
T ss_pred C---CCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEE
Confidence 1 11100000 0 01123599999999999999999986 25789
Q ss_pred EEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchh
Q 013943 231 SLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGT 310 (433)
Q Consensus 231 tl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (433)
+++.+.+ .++|..+. . .....
T Consensus 214 tlv~~~~-~ll~~~~~-----------------~-----------------------------------------~~~~~ 234 (424)
T PTZ00318 214 TVLEAGS-EVLGSFDQ-----------------A-----------------------------------------LRKYG 234 (424)
T ss_pred EEEcCCC-cccccCCH-----------------H-----------------------------------------HHHHH
Confidence 9999887 45442211 1 11122
Q ss_pred hhhhhcCCeEEecC--ceEEeCCeEEEcCCcEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceE
Q 013943 311 LAKIKSGHIRVFPG--IKRLKRYAVEFVNGRCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLY 388 (433)
Q Consensus 311 ~~~~~~~~v~~~~~--v~~~~~~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iy 388 (433)
.+.+++.+|+++.+ |.+++.+.+.+++|+++++|.+|+|+|..|+. +..+.++..+++|++.+|..++.++.|+||
T Consensus 235 ~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~--~~~~~~l~~~~~G~I~Vd~~l~~~~~~~If 312 (424)
T PTZ00318 235 QRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGP--LTKQLKVDKTSRGRISVDDHLRVKPIPNVF 312 (424)
T ss_pred HHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcc--hhhhcCCcccCCCcEEeCCCcccCCCCCEE
Confidence 35566788999976 88999899999999999999999999999984 777777776678999999433347899999
Q ss_pred Eeeecccc--------cccchhhHHHHHHHHHhhhcc
Q 013943 389 SVGFTKRG--------LLGVAMDAKRIAQDIESCWKA 417 (433)
Q Consensus 389 a~Gd~~~~--------~~~a~~~g~~~a~~i~~~l~~ 417 (433)
|+|||+.. ...|..+|..+|++|.+.+..
T Consensus 313 AiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 313 ALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred EEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999952 235899999999999998865
No 22
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.98 E-value=1.4e-31 Score=266.42 Aligned_cols=301 Identities=19% Similarity=0.235 Sum_probs=197.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc-cccCceeeecCCceeec---CCCCC-----CCCCCCC-
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL-KTYDRLRLHLPKQFCEL---PLMGF-----PSEFPTY- 103 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~- 103 (433)
|||+||||||+|+++|..+++.|.+|+|+|+.. +||.|.. .++|.-.+......... ..+.. .-++...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 799999999999999999999999999999975 7887543 33332221111100000 00000 0011110
Q ss_pred CCHHHHHHH-----HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 104 PSKQQFVDY-----LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 104 ~~~~~~~~~-----l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
...+++... +..++++.++++..+. +..++ . .. |...++ ...+.+|+||+||| ++|..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~~~--~--~~--v~v~~g-------~~~~~~~~lIiATG--s~p~~p 143 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARFKD--P--KT--VKVDLG-------REVRGAKRFLIATG--ARPAIP 143 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEEcc--C--CE--EEEcCC-------eEEEEeCEEEEcCC--CCCCCC
Confidence 112233222 2234556677765553 32221 1 23 554432 24689999999999 889999
Q ss_pred CccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHH
Q 013943 179 EIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLL 258 (433)
Q Consensus 179 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~ 258 (433)
++||.+... ..+..... .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|..+. .
T Consensus 144 ~i~G~~~~~--~~~~~~~~-~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~------ 208 (463)
T TIGR02053 144 PIPGLKEAG--YLTSEEAL-ALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEP-----E------ 208 (463)
T ss_pred CCCCcccCc--eECchhhh-CcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCH-----H------
Confidence 999876431 22222222 122346899999999999999999999999999999987 55554321 0
Q ss_pred hhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC--e--
Q 013943 259 KWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY--A-- 332 (433)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~-- 332 (433)
....+.+.+++.+|+++.+ +.++..+ .
T Consensus 209 -----------------------------------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~ 241 (463)
T TIGR02053 209 -----------------------------------------------ISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKI 241 (463)
T ss_pred -----------------------------------------------HHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEE
Confidence 0011123355567888776 6666532 2
Q ss_pred EEEc---CCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhHH
Q 013943 333 VEFV---NGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDAK 405 (433)
Q Consensus 333 v~~~---~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g~ 405 (433)
+.+. +++++++|.||+|+|+.|+...+ +...++..+++|++.+| +.++|+.|+|||+|||+.. ...|..+|+
T Consensus 242 v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd-~~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~ 320 (463)
T TIGR02053 242 ITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVD-ETLRTSNPGIYAAGDVTGGLQLEYVAAKEGV 320 (463)
T ss_pred EEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeEC-CCccCCCCCEEEeeecCCCcccHhHHHHHHH
Confidence 3333 23579999999999999998545 55567766788999999 6788999999999999974 447899999
Q ss_pred HHHHHHHhh
Q 013943 406 RIAQDIESC 414 (433)
Q Consensus 406 ~~a~~i~~~ 414 (433)
.+|.+|.+.
T Consensus 321 ~aa~ni~~~ 329 (463)
T TIGR02053 321 VAAENALGG 329 (463)
T ss_pred HHHHHhcCC
Confidence 999999854
No 23
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.98 E-value=5.1e-31 Score=262.39 Aligned_cols=302 Identities=19% Similarity=0.236 Sum_probs=199.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccccCceeeecCCceee----cCCCCCCCCCCCCCCH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW-QLKTYDRLRLHLPKQFCE----LPLMGFPSEFPTYPSK 106 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 106 (433)
..|||+||||||+|+++|..|++.|++|+++|+.. +||.| ...++|.-.+........ +..+.+... ......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 46999999999999999999999999999999987 88865 444555422221111110 011111000 011234
Q ss_pred HHHHHH-----------HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 107 QQFVDY-----------LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 107 ~~~~~~-----------l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
.++.++ +...+++.++++..++ ++.++. ..+++...++ ...+.||+||+||| ++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~~----~~~~v~~~~~-------~~~~~~d~lViAtG--s~p 146 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVDP----NTVRVMTEDG-------EQTYTAKNIILATG--SRP 146 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC----CEEEEecCCC-------cEEEEeCEEEEeCC--CCC
Confidence 444444 3334555677766553 433321 3444543222 16799999999999 666
Q ss_pred ccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhH
Q 013943 176 VVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSM 255 (433)
Q Consensus 176 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~ 255 (433)
..| ||... .+..+++..........+++++|||+|++|+|+|..|.+.|.+||++.+.+ +++|..+.
T Consensus 147 ~~~--pg~~~-~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~--------- 213 (462)
T PRK06416 147 REL--PGIEI-DGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK--------- 213 (462)
T ss_pred CCC--CCCCC-CCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH---------
Confidence 654 34432 222233332222223456899999999999999999999999999999988 55553221
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC--
Q 013943 256 WLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY-- 331 (433)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-- 331 (433)
.. ...+.+.+++.+|+++.+ +.++..+
T Consensus 214 --------~~-----------------------------------------~~~l~~~l~~~gV~i~~~~~V~~i~~~~~ 244 (462)
T PRK06416 214 --------EI-----------------------------------------SKLAERALKKRGIKIKTGAKAKKVEQTDD 244 (462)
T ss_pred --------HH-----------------------------------------HHHHHHHHHHcCCEEEeCCEEEEEEEeCC
Confidence 00 111123355567888876 6777543
Q ss_pred e--EEEcCC---cEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchh
Q 013943 332 A--VEFVNG---RCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAM 402 (433)
Q Consensus 332 ~--v~~~~g---~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~ 402 (433)
+ +.+.++ +++++|.||+|+|..|+...+ +++.++..+ +|++.+| ++++|+.|+|||+|||+.. ...|..
T Consensus 245 ~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd-~~~~t~~~~VyAiGD~~~~~~~~~~A~~ 322 (462)
T PRK06416 245 GVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVD-EQLRTNVPNIYAIGDIVGGPMLAHKASA 322 (462)
T ss_pred EEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeEC-CCCccCCCCEEEeeecCCCcchHHHHHH
Confidence 3 344555 679999999999999998433 345577665 8889898 6778999999999999853 447899
Q ss_pred hHHHHHHHHHh
Q 013943 403 DAKRIAQDIES 413 (433)
Q Consensus 403 ~g~~~a~~i~~ 413 (433)
+|+.+|++|.+
T Consensus 323 ~g~~aa~ni~~ 333 (462)
T PRK06416 323 EGIIAAEAIAG 333 (462)
T ss_pred HHHHHHHHHcC
Confidence 99999999986
No 24
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.98 E-value=4.1e-31 Score=256.14 Aligned_cols=280 Identities=22% Similarity=0.335 Sum_probs=197.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERG--IPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
+++|+|||||+||+.+|..|++.+ .+|+++++++... |....+ + ....+.....++.
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~l--~------------~~~~~~~~~~~~~ 60 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPDL--S------------HVFSQGQRADDLT 60 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCcC--c------------HHHhCCCCHHHhh
Confidence 368999999999999999998864 5899999987321 111000 0 0111112334444
Q ss_pred H-HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCc
Q 013943 111 D-YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGD 189 (433)
Q Consensus 111 ~-~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~ 189 (433)
. ...+++++.+++++.+++|++++.+. .. +.++ + ..+.||+||+||| +.|..|+++|.+.
T Consensus 61 ~~~~~~~~~~~gv~~~~~~~V~~id~~~--~~--v~~~-~--------~~~~yd~LVlATG--~~~~~p~i~G~~~---- 121 (377)
T PRK04965 61 RQSAGEFAEQFNLRLFPHTWVTDIDAEA--QV--VKSQ-G--------NQWQYDKLVLATG--ASAFVPPIPGREL---- 121 (377)
T ss_pred cCCHHHHHHhCCCEEECCCEEEEEECCC--CE--EEEC-C--------eEEeCCEEEECCC--CCCCCCCCCCCce----
Confidence 3 24566778899999999999998765 33 4443 3 6899999999999 7888888888643
Q ss_pred eeeccCCCC-----CCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchH
Q 013943 190 IRHTSLYKS-----GEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMR 264 (433)
Q Consensus 190 ~~~~~~~~~-----~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~ 264 (433)
+.......+ .....+++++|||+|++|+|+|..|.+.+.+|+++.+.+ ++++.. +++.
T Consensus 122 v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~~----------------~~~~ 184 (377)
T PRK04965 122 MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLASL----------------MPPE 184 (377)
T ss_pred EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccchh----------------CCHH
Confidence 222111111 112356899999999999999999999999999999887 443321 1111
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC----eEEEcCC
Q 013943 265 LVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY----AVEFVNG 338 (433)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g 338 (433)
.. ..+.+.+++.+|+++.+ +.++..+ .+.+.+|
T Consensus 185 ~~-----------------------------------------~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g 223 (377)
T PRK04965 185 VS-----------------------------------------SRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSG 223 (377)
T ss_pred HH-----------------------------------------HHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCC
Confidence 11 11123455567887765 7777643 2667889
Q ss_pred cEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc-------cccchhhHHHHHHHH
Q 013943 339 RCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-------LLGVAMDAKRIAQDI 411 (433)
Q Consensus 339 ~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-------~~~a~~~g~~~a~~i 411 (433)
+++++|.||+|+|+.|+. .+.++.++.. ++| +++| +.++|+.|+|||+|||+.. +..|..+|+.+|++|
T Consensus 224 ~~i~~D~vI~a~G~~p~~-~l~~~~gl~~-~~g-i~vd-~~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~ 299 (377)
T PRK04965 224 RSIEVDAVIAAAGLRPNT-ALARRAGLAV-NRG-IVVD-SYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNL 299 (377)
T ss_pred cEEECCEEEECcCCCcch-HHHHHCCCCc-CCC-EEEC-CCcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHh
Confidence 999999999999999998 5777777766 456 7788 5788999999999999852 335789999999999
Q ss_pred Hhh
Q 013943 412 ESC 414 (433)
Q Consensus 412 ~~~ 414 (433)
.+.
T Consensus 300 ~g~ 302 (377)
T PRK04965 300 LGQ 302 (377)
T ss_pred cCC
Confidence 864
No 25
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=4.6e-31 Score=260.65 Aligned_cols=281 Identities=18% Similarity=0.182 Sum_probs=192.7
Q ss_pred ccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHH
Q 013943 30 CICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQF 109 (433)
Q Consensus 30 ~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
....+||+||||||+|+++|..|+++|++|+|+|+.+.+||.+.. .++.+. ...+++
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~~--------l~~~~~ 193 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY---------------GIPEFR--------LPKETV 193 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee---------------cCCCcc--------CCccHH
Confidence 346789999999999999999999999999999999888887643 111111 112346
Q ss_pred HHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCc
Q 013943 110 VDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGD 189 (433)
Q Consensus 110 ~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~ 189 (433)
.++..+++++.++++++++.+. .. +...+. ...+.||.||+|||+ ..|+.+++||.+.. +
T Consensus 194 ~~~~~~~~~~~gv~i~~~~~v~--------~~--v~~~~~-------~~~~~~d~viiAtGa-~~~~~l~ipG~~~~-g- 253 (464)
T PRK12831 194 VKKEIENIKKLGVKIETNVVVG--------KT--VTIDEL-------LEEEGFDAVFIGSGA-GLPKFMGIPGENLN-G- 253 (464)
T ss_pred HHHHHHHHHHcCCEEEcCCEEC--------Cc--CCHHHH-------HhccCCCEEEEeCCC-CCCCCCCCCCcCCc-C-
Confidence 6666777888899998887551 11 222221 124569999999994 25777888886531 1
Q ss_pred eeeccCC-------------CCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHH
Q 013943 190 IRHTSLY-------------KSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMW 256 (433)
Q Consensus 190 ~~~~~~~-------------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~ 256 (433)
++....+ .+.....+++|+|||+|++|+|+|..+.+.|.+|++++|+....+|....
T Consensus 254 V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~---------- 323 (464)
T PRK12831 254 VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVE---------- 323 (464)
T ss_pred cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH----------
Confidence 1111111 11123468999999999999999999999999999999877322221100
Q ss_pred HHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC--Ce
Q 013943 257 LLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR--YA 332 (433)
Q Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~ 332 (433)
. .+.+.+.+|+++.. +.++.. ++
T Consensus 324 -----------e------------------------------------------~~~a~~eGV~i~~~~~~~~i~~~~~g 350 (464)
T PRK12831 324 -----------E------------------------------------------VHHAKEEGVIFDLLTNPVEILGDENG 350 (464)
T ss_pred -----------H------------------------------------------HHHHHHcCCEEEecccceEEEecCCC
Confidence 0 01112233444332 222211 10
Q ss_pred ----EEE------------------cCCc--EecccEEEEccCCCCCCCCcccc-ccccccCCCCcCCCCCCCCCCCCce
Q 013943 333 ----VEF------------------VNGR--CENFDAIILATGYRSNVPSWLKE-SEMFSRKDGLPRRPFPNGWKGESGL 387 (433)
Q Consensus 333 ----v~~------------------~~g~--~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~i 387 (433)
+.+ .+|+ ++++|.||+|+|+.|+. .++.+ .++..+++|.+.+|..+++|+.|+|
T Consensus 351 ~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgV 429 (464)
T PRK12831 351 WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP-LISSTTKGLKINKRGCIVADEETGLTSKEGV 429 (464)
T ss_pred eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCCh-hhhcccCCceECCCCcEEECCCCCccCCCCE
Confidence 111 1232 59999999999999998 56665 4776667899988844489999999
Q ss_pred EEeeecccc---cccchhhHHHHHHHHHhhhcc
Q 013943 388 YSVGFTKRG---LLGVAMDAKRIAQDIESCWKA 417 (433)
Q Consensus 388 ya~Gd~~~~---~~~a~~~g~~~a~~i~~~l~~ 417 (433)
||+||+..+ +..|+.+|+.+|.+|.++|..
T Consensus 430 fAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 430 FAGGDAVTGAATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred EEeCCCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999864 457999999999999998864
No 26
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=9.3e-31 Score=259.89 Aligned_cols=305 Identities=16% Similarity=0.142 Sum_probs=193.9
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccccCceeeecCCce-e---ecCCCCCCCCCCCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW-QLKTYDRLRLHLPKQF-C---ELPLMGFPSEFPTYPS 105 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 105 (433)
+..|||+||||||+|+.+|..+++.|.+|+++|+.+.+||.+ +..++|.-.+...... . ....+..... .....
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~ 80 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKID 80 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcC
Confidence 357999999999999999999999999999999987888854 3444444221110000 0 0000000000 00112
Q ss_pred HHHHHHH-----------HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 106 KQQFVDY-----------LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 106 ~~~~~~~-----------l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
...+.++ ....++..++++..+. +..++ . ..+.|...++ +...+.||+||+||| ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~--~--~~v~v~~~~g------~~~~~~~d~lViATG--s~ 147 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTG--G--NTLEVTGEDG------KTTVIEFDNAIIAAG--SR 147 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CEEEEecCCC------ceEEEEcCEEEEeCC--CC
Confidence 2222222 2234455677766553 32221 2 4555554332 135799999999999 77
Q ss_pred Ccc-CCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhh
Q 013943 175 AVV-PEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGL 253 (433)
Q Consensus 175 p~~-p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~ 253 (433)
|.. |.+++... .+..+.+... ....+++++|||+|.+|+|+|..|.+.|.+||++.+.+ +++|..+. ..
T Consensus 148 p~~~p~~~~~~~---~v~~~~~~~~-~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~-----~~ 217 (471)
T PRK06467 148 PIQLPFIPHDDP---RIWDSTDALE-LKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADK-----DI 217 (471)
T ss_pred CCCCCCCCCCCC---cEEChHHhhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCH-----HH
Confidence 763 44444221 1222222222 22346899999999999999999999999999999988 56664322 11
Q ss_pred hHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--
Q 013943 254 SMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK-- 329 (433)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~-- 329 (433)
.. .+.+.+++. ++++.+ +.++.
T Consensus 218 ~~-----------------------------------------------------~~~~~l~~~-v~i~~~~~v~~i~~~ 243 (471)
T PRK06467 218 VK-----------------------------------------------------VFTKRIKKQ-FNIMLETKVTAVEAK 243 (471)
T ss_pred HH-----------------------------------------------------HHHHHHhhc-eEEEcCCEEEEEEEc
Confidence 10 111223333 666655 55554
Q ss_pred CCe--EEEcC--C--cEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---ccc
Q 013943 330 RYA--VEFVN--G--RCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLG 399 (433)
Q Consensus 330 ~~~--v~~~~--g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~ 399 (433)
+++ +.+.+ + +++++|.||+|+|+.||...+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...
T Consensus 244 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd-~~~~t~~p~VyAiGDv~~~~~la~~ 322 (471)
T PRK06467 244 EDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVD-KQCRTNVPHIFAIGDIVGQPMLAHK 322 (471)
T ss_pred CCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeC-CCcccCCCCEEEehhhcCCcccHHH
Confidence 233 33333 2 459999999999999998433 23447777788999998 6788999999999999854 457
Q ss_pred chhhHHHHHHHHHhh
Q 013943 400 VAMDAKRIAQDIESC 414 (433)
Q Consensus 400 a~~~g~~~a~~i~~~ 414 (433)
|..+|+.+|++|.+.
T Consensus 323 A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 323 GVHEGHVAAEVIAGK 337 (471)
T ss_pred HHHHHHHHHHHHcCC
Confidence 899999999999863
No 27
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.97 E-value=3.2e-31 Score=276.42 Aligned_cols=285 Identities=18% Similarity=0.185 Sum_probs=205.4
Q ss_pred CCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKER----GIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQF 109 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~----g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
.+|||||+|++|+.+|..|+++ +++|+||++++.+. |....+.. .+.+ ...+++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~~--------------~~~~-~~~~~l 61 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLSS--------------YFSH-HTAEEL 61 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcchH--------------hHcC-CCHHHc
Confidence 4899999999999999999875 47999999998542 22211110 0011 123333
Q ss_pred HHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCc
Q 013943 110 VDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGD 189 (433)
Q Consensus 110 ~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~ 189 (433)
.....+++++.+++++.++.|+.++.+. . .|++.++ ..+.||+||+||| ++|.+|++||.+...-+
T Consensus 62 ~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~--~V~~~~G--------~~i~yD~LVIATG--s~p~~p~ipG~~~~~v~ 127 (847)
T PRK14989 62 SLVREGFYEKHGIKVLVGERAITINRQE--K--VIHSSAG--------RTVFYDKLIMATG--SYPWIPPIKGSETQDCF 127 (847)
T ss_pred cCCCHHHHHhCCCEEEcCCEEEEEeCCC--c--EEEECCC--------cEEECCEEEECCC--CCcCCCCCCCCCCCCeE
Confidence 3334456677899999999999998754 2 2666665 6799999999999 88999999987642211
Q ss_pred eeeccCCCC---CCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHH
Q 013943 190 IRHTSLYKS---GEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLV 266 (433)
Q Consensus 190 ~~~~~~~~~---~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~ 266 (433)
.+.+..... .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ ++++.... +.
T Consensus 128 ~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld----------------~~-- 188 (847)
T PRK14989 128 VYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLD----------------QM-- 188 (847)
T ss_pred EECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcC----------------HH--
Confidence 221211111 112357899999999999999999999999999999887 45442110 00
Q ss_pred HHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC------eEEEcCC
Q 013943 267 DKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY------AVEFVNG 338 (433)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~------~v~~~~g 338 (433)
....+.+.+++.+|+++.+ +.++..+ .+.+.+|
T Consensus 189 ---------------------------------------~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG 229 (847)
T PRK14989 189 ---------------------------------------GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG 229 (847)
T ss_pred ---------------------------------------HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC
Confidence 1111224466678888877 6777532 3677899
Q ss_pred cEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc-------cccchhhHHHHHHHH
Q 013943 339 RCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-------LLGVAMDAKRIAQDI 411 (433)
Q Consensus 339 ~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-------~~~a~~~g~~~a~~i 411 (433)
+++++|.||+|+|++||. .++++.++..+++|.+++| ++++|+.|+|||+|||+.. +..|..+|+.+|++|
T Consensus 230 ~~i~~D~Vv~A~G~rPn~-~L~~~~Gl~~~~~G~I~VD-~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i 307 (847)
T PRK14989 230 SELEVDFIVFSTGIRPQD-KLATQCGLAVAPRGGIVIN-DSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHL 307 (847)
T ss_pred CEEEcCEEEECCCcccCc-hHHhhcCccCCCCCcEEEC-CCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHh
Confidence 999999999999999998 5777778877778899999 6888999999999999953 235678899999998
Q ss_pred Hhh
Q 013943 412 ESC 414 (433)
Q Consensus 412 ~~~ 414 (433)
.+.
T Consensus 308 ~g~ 310 (847)
T PRK14989 308 LGS 310 (847)
T ss_pred cCC
Confidence 764
No 28
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.97 E-value=6.4e-31 Score=259.30 Aligned_cols=275 Identities=19% Similarity=0.208 Sum_probs=191.1
Q ss_pred ccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHH
Q 013943 30 CICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQF 109 (433)
Q Consensus 30 ~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
+...++|+|||+|++|+++|..|++.|++|+|+|+.+.+||.+... ++ .+....++
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip---------~~~~~~~~ 185 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IP---------EFRLPKEI 185 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CC---------CccCCHHH
Confidence 3456899999999999999999999999999999998888865331 11 11122455
Q ss_pred HHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCc
Q 013943 110 VDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGD 189 (433)
Q Consensus 110 ~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~ 189 (433)
.+...+.+.+.++++++++.+ + .. +++.+. ...||+||+|||. +.|..|++||.+. .+
T Consensus 186 ~~~~~~~l~~~gv~~~~~~~v------~--~~--v~~~~~---------~~~yd~viiAtGa-~~p~~~~ipG~~~-~g- 243 (449)
T TIGR01316 186 VVTEIKTLKKLGVTFRMNFLV------G--KT--ATLEEL---------FSQYDAVFIGTGA-GLPKLMNIPGEEL-CG- 243 (449)
T ss_pred HHHHHHHHHhCCcEEEeCCcc------C--Cc--CCHHHH---------HhhCCEEEEeCCC-CCCCcCCCCCCCC-CC-
Confidence 555666677788888887644 1 11 333321 2468999999994 3688888888653 12
Q ss_pred eeeccCC------C--------CCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhH
Q 013943 190 IRHTSLY------K--------SGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSM 255 (433)
Q Consensus 190 ~~~~~~~------~--------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~ 255 (433)
+++...+ . ......+++|+|||+|++|+|+|..+.+.|.+||+++|++...++..
T Consensus 244 v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~----------- 312 (449)
T TIGR01316 244 VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR----------- 312 (449)
T ss_pred cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC-----------
Confidence 2221111 0 11124678999999999999999999999999999998862111100
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC--C
Q 013943 256 WLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR--Y 331 (433)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~ 331 (433)
....+.+.+.+|+++.. +.++.. +
T Consensus 313 ----------------------------------------------------~~~~~~l~~~GV~~~~~~~~~~i~~~~~ 340 (449)
T TIGR01316 313 ----------------------------------------------------VEEIAHAEEEGVKFHFLCQPVEIIGDEE 340 (449)
T ss_pred ----------------------------------------------------HHHHHHHHhCCCEEEeccCcEEEEEcCC
Confidence 00012233445555543 333321 1
Q ss_pred ----eEEEc---------CC-----------cEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCce
Q 013943 332 ----AVEFV---------NG-----------RCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGL 387 (433)
Q Consensus 332 ----~v~~~---------~g-----------~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~i 387 (433)
++.+. +| .++++|.||+|+|+.|+. .++.+.++..+++|.+.+| +.++|+.|+|
T Consensus 341 g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~-~~l~~~gl~~~~~G~i~vd-~~~~Ts~~~V 418 (449)
T TIGR01316 341 GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP-IMAETTRLKTSERGTIVVD-EDQRTSIPGV 418 (449)
T ss_pred CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc-hhhhccCcccCCCCeEEeC-CCCccCCCCE
Confidence 12221 12 359999999999999998 6777777777778999998 5788999999
Q ss_pred EEeeecccc---cccchhhHHHHHHHHHhhh
Q 013943 388 YSVGFTKRG---LLGVAMDAKRIAQDIESCW 415 (433)
Q Consensus 388 ya~Gd~~~~---~~~a~~~g~~~a~~i~~~l 415 (433)
||+||++.+ +..|+.+|+.+|.+|..+|
T Consensus 419 fA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 419 FAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 999999864 4479999999999998764
No 29
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.97 E-value=1.2e-30 Score=258.34 Aligned_cols=309 Identities=13% Similarity=0.113 Sum_probs=196.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc-CCCEEEEecC--------CCCCCc-ccccccCceeeecCCcee----ecCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKER-GIPSILLERS--------NCIASL-WQLKTYDRLRLHLPKQFC----ELPLMGFP 97 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~-g~~v~iie~~--------~~~gg~-w~~~~~~~~~~~~~~~~~----~~~~~~~~ 97 (433)
..|||+|||+|++|..+|.++++. |.+|++||+. ..+||. .+..+.|.-.+....... ....+.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 579999999999999999999997 8999999974 467873 444444443322111110 00000000
Q ss_pred CC-CCCCCCHHHHHHH-------H----HHHHHH-cCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCE
Q 013943 98 SE-FPTYPSKQQFVDY-------L----EAYAKR-FEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRW 164 (433)
Q Consensus 98 ~~-~~~~~~~~~~~~~-------l----~~~~~~-~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~ 164 (433)
.. ...-.....+.++ + .+.++. .++++..+. . ...+ ...++|....+ ..+.+...+.||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~-a---~f~~-~~~v~V~~~~~--~~~~~~~~~~~d~ 154 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW-G---ALED-KNVVLVRESAD--PKSAVKERLQAEH 154 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE-E---EEcc-CCEEEEeeccC--CCCCcceEEECCE
Confidence 00 0000122222222 2 122333 245544432 1 1111 14444443211 0011135799999
Q ss_pred EEEccCCCCCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhcc---CCCcEEEEecCccee
Q 013943 165 LVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNH---DAMPSLVVRDTVHVL 241 (433)
Q Consensus 165 viiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~---g~~Vtl~~r~~~~~l 241 (433)
||+||| ++|..|+++|.+.. .+..........+++++|||+|.+|+|+|..+... |.+||++.+.+ .++
T Consensus 155 lIIATG--s~p~~p~i~G~~~~-----~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~il 226 (486)
T TIGR01423 155 ILLATG--SWPQMLGIPGIEHC-----ISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-MIL 226 (486)
T ss_pred EEEecC--CCCCCCCCCChhhe-----echhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-ccc
Confidence 999999 88998988886431 12111111223578999999999999999876654 89999999888 555
Q ss_pred cccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEE
Q 013943 242 PQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRV 321 (433)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 321 (433)
|..+. . +...+.+.+++.+|++
T Consensus 227 ~~~d~-----------------~-----------------------------------------~~~~l~~~L~~~GI~i 248 (486)
T TIGR01423 227 RGFDS-----------------T-----------------------------------------LRKELTKQLRANGINI 248 (486)
T ss_pred cccCH-----------------H-----------------------------------------HHHHHHHHHHHcCCEE
Confidence 54322 0 1111224455677888
Q ss_pred ecC--ceEEeC--C---eEEEcCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeec
Q 013943 322 FPG--IKRLKR--Y---AVEFVNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFT 393 (433)
Q Consensus 322 ~~~--v~~~~~--~---~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~ 393 (433)
+.+ +.++.. + .+.+.+++++++|.||+|+|+.|+...+ ++..++..+++|++.+| ++++|+.|+|||+|||
T Consensus 249 ~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd-~~l~Ts~~~IyA~GDv 327 (486)
T TIGR01423 249 MTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVD-EFSRTNVPNIYAIGDV 327 (486)
T ss_pred EcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecC-CCCcCCCCCEEEeeec
Confidence 876 666652 2 3566778889999999999999998433 34457776788999999 6778999999999999
Q ss_pred ccc---cccchhhHHHHHHHHHhh
Q 013943 394 KRG---LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 394 ~~~---~~~a~~~g~~~a~~i~~~ 414 (433)
+.. +..|..+|+.+|++|.+.
T Consensus 328 ~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 328 TDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred CCCcccHHHHHHHHHHHHHHHhCC
Confidence 964 447899999999999753
No 30
>PLN02546 glutathione reductase
Probab=99.97 E-value=1.7e-31 Score=267.15 Aligned_cols=299 Identities=15% Similarity=0.163 Sum_probs=196.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecC---------CCCCC-cccccccCceeeecCCcee----ecCCCCC--
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERS---------NCIAS-LWQLKTYDRLRLHLPKQFC----ELPLMGF-- 96 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~---------~~~gg-~w~~~~~~~~~~~~~~~~~----~~~~~~~-- 96 (433)
.|||+|||+|++|+.+|..+++.|.+|+|+|+. ..+|| +.+..+.|.-.+....... ....+.+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 489999999999999999999999999999962 34566 3333444432221111100 0000000
Q ss_pred ----CCCCCCCC-----CHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEE
Q 013943 97 ----PSEFPTYP-----SKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVV 167 (433)
Q Consensus 97 ----~~~~~~~~-----~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~vii 167 (433)
.-+|.... ...++.+++.+.+++.+++++.+ +++.++. .. |.. +| ..+.||+||+
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~----~~--V~v-~G--------~~~~~D~LVI 222 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP----HT--VDV-DG--------KLYTARNILI 222 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC----CE--EEE-CC--------EEEECCEEEE
Confidence 00111111 11223444555566667776654 3433332 22 443 33 5799999999
Q ss_pred ccCCCCCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccC
Q 013943 168 ATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLG 247 (433)
Q Consensus 168 AtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~ 247 (433)
||| ++|..|++||.+. .. .+.........+++++|||+|.+|+|+|..|...+.+|+++.+.+ .+++..+.
T Consensus 223 ATG--s~p~~P~IpG~~~----v~-~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~il~~~d~- 293 (558)
T PLN02546 223 AVG--GRPFIPDIPGIEH----AI-DSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-KVLRGFDE- 293 (558)
T ss_pred eCC--CCCCCCCCCChhh----cc-CHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-ccccccCH-
Confidence 999 8899999888642 11 221111222457899999999999999999999999999999887 55543221
Q ss_pred CcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--c
Q 013943 248 KSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--I 325 (433)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v 325 (433)
. ......+.+++.+|+++.+ +
T Consensus 294 ----------------~-----------------------------------------~~~~l~~~L~~~GV~i~~~~~v 316 (558)
T PLN02546 294 ----------------E-----------------------------------------VRDFVAEQMSLRGIEFHTEESP 316 (558)
T ss_pred ----------------H-----------------------------------------HHHHHHHHHHHCCcEEEeCCEE
Confidence 0 0111123455678888876 5
Q ss_pred eEEeC---CeEE--EcCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---
Q 013943 326 KRLKR---YAVE--FVNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG--- 396 (433)
Q Consensus 326 ~~~~~---~~v~--~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~--- 396 (433)
.++.. +.+. +.+++...+|.||+|+|+.||...+ +++.++..+++|++.+| ++++|+.|+|||+|||+..
T Consensus 317 ~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD-~~l~Ts~p~IYAaGDv~~~~~l 395 (558)
T PLN02546 317 QAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD-EYSRTSVPSIWAVGDVTDRINL 395 (558)
T ss_pred EEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeEC-CCceeCCCCEEEeeccCCCccc
Confidence 66642 2233 3344445689999999999998433 45668877778999999 6788999999999999964
Q ss_pred cccchhhHHHHHHHHHhh
Q 013943 397 LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 397 ~~~a~~~g~~~a~~i~~~ 414 (433)
...|..+|..+|++|.+.
T Consensus 396 ~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 396 TPVALMEGGALAKTLFGN 413 (558)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 447889999999999864
No 31
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2.3e-30 Score=257.62 Aligned_cols=300 Identities=20% Similarity=0.216 Sum_probs=192.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc-cccCceeeecCCce----eecCCCCCCCCCCCCCCH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL-KTYDRLRLHLPKQF----CELPLMGFPSEFPTYPSK 106 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 106 (433)
.+|||+||||||+|+++|..|.+.|.+|++||+ ..+||.|.. .++|.-.+...... ..+..+..... ....+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~ 79 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDF 79 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCH
Confidence 469999999999999999999999999999999 678987754 23322111100000 00111111000 122456
Q ss_pred HHHHHHHHHHHHHcC------------CcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 107 QQFVDYLEAYAKRFE------------IRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 107 ~~~~~~l~~~~~~~~------------l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
.++.++..+....+. +++..+ ++. .... .. +.+ ++ .++.||+||+||| ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~---~~~~-~~--v~v-~~--------~~~~~d~lIiATG--s~ 141 (460)
T PRK06292 80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TAR---FVDP-NT--VEV-NG--------ERIEAKNIVIATG--SR 141 (460)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEE---EccC-CE--EEE-Cc--------EEEEeCEEEEeCC--CC
Confidence 666666665544332 221111 111 1111 22 333 33 6899999999999 55
Q ss_pred CccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhh
Q 013943 175 AVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLS 254 (433)
Q Consensus 175 p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~ 254 (433)
.|.+||.....+..+.++.........+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|..+.
T Consensus 142 --~p~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-------- 210 (460)
T PRK06292 142 --VPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDP-------- 210 (460)
T ss_pred --CCCCCCCcccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhH--------
Confidence 4455554322222233332222233467899999999999999999999999999999887 55543211
Q ss_pred HHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC-
Q 013943 255 MWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY- 331 (433)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~- 331 (433)
... ..+.+.+++. |+++.+ +.++..+
T Consensus 211 ---------~~~-----------------------------------------~~~~~~l~~~-I~i~~~~~v~~i~~~~ 239 (460)
T PRK06292 211 ---------EVS-----------------------------------------KQAQKILSKE-FKIKLGAKVTSVEKSG 239 (460)
T ss_pred ---------HHH-----------------------------------------HHHHHHHhhc-cEEEcCCEEEEEEEcC
Confidence 000 1112334445 777765 6666532
Q ss_pred --eEEE--cCC--cEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccch
Q 013943 332 --AVEF--VNG--RCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVA 401 (433)
Q Consensus 332 --~v~~--~~g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~ 401 (433)
.+.+ .++ +++++|.||+|+|..|+...+ ++..++..+++|++.+| ++++|+.|+|||+|||+.. ...|.
T Consensus 240 ~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd-~~~~ts~~~IyA~GD~~~~~~~~~~A~ 318 (460)
T PRK06292 240 DEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVD-EHTQTSVPGIYAAGDVNGKPPLLHEAA 318 (460)
T ss_pred CceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeEC-CCcccCCCCEEEEEecCCCccchhHHH
Confidence 3443 233 469999999999999999543 35557766778999898 6788999999999999964 45799
Q ss_pred hhHHHHHHHHHhh
Q 013943 402 MDAKRIAQDIESC 414 (433)
Q Consensus 402 ~~g~~~a~~i~~~ 414 (433)
.+|+.+|.+|.+.
T Consensus 319 ~qg~~aa~~i~~~ 331 (460)
T PRK06292 319 DEGRIAAENAAGD 331 (460)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999864
No 32
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=3.3e-30 Score=256.39 Aligned_cols=307 Identities=15% Similarity=0.168 Sum_probs=190.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccccCceeeecCCceee-----cCCCCCCCCCCCCCCH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW-QLKTYDRLRLHLPKQFCE-----LPLMGFPSEFPTYPSK 106 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 106 (433)
.|||+||||||+|+++|..|++.|.+|+++|++ .+||.+ ...+.|.-.+.....+.. ...+..... .....
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~--~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGE--VTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcC--cccCH
Confidence 589999999999999999999999999999986 466643 333443211111100000 000000000 01122
Q ss_pred HHHHHHHHHHHHHc--CCccee-cceEEEEEEe---CCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCc
Q 013943 107 QQFVDYLEAYAKRF--EIRPRF-NETVSQAEYD---ATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEI 180 (433)
Q Consensus 107 ~~~~~~l~~~~~~~--~l~~~~-~~~v~~v~~~---~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~ 180 (433)
..+..+..+...+. ++.... ...|+.++.. -+...+++...++ +..+++||+||+||| ++|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g------~~~~~~~d~lViATG--s~p~~~-- 150 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDG------GTETVTFDNAIIATG--SSTRLL-- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCC------CeeEEEcCEEEEeCC--CCCCCC--
Confidence 22222222221111 111111 1123333311 1124555554332 125799999999999 777654
Q ss_pred cCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhh
Q 013943 181 EGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKW 260 (433)
Q Consensus 181 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~ 260 (433)
||.+. .+.++...... .....+++++|||+|.+|+|+|..|++.|.+|+++.+.+ +++|..+. .
T Consensus 151 pg~~~-~~~v~~~~~~~-~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~-----~-------- 214 (466)
T PRK07818 151 PGTSL-SENVVTYEEQI-LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDA-----E-------- 214 (466)
T ss_pred CCCCC-CCcEEchHHHh-ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCH-----H--------
Confidence 44321 12222222211 112357899999999999999999999999999999887 66664321 0
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCe----EE
Q 013943 261 LPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYA----VE 334 (433)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~----v~ 334 (433)
....+.+.+++.+|+++.+ +.++..++ +.
T Consensus 215 ---------------------------------------------~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~ 249 (466)
T PRK07818 215 ---------------------------------------------VSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVT 249 (466)
T ss_pred ---------------------------------------------HHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEE
Confidence 1111124455678888876 67775432 33
Q ss_pred Ec--CC--cEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhHHH
Q 013943 335 FV--NG--RCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDAKR 406 (433)
Q Consensus 335 ~~--~g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g~~ 406 (433)
+. +| +++++|.||+|+|+.|+...+ +...++..+++|++.+| ++++|+.|+|||+|||+.. ...|..+|+.
T Consensus 250 ~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~ 328 (466)
T PRK07818 250 VSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAID-DYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVV 328 (466)
T ss_pred EEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeC-CCcccCCCCEEEEeecCCCcccHhHHHHHHHH
Confidence 43 56 369999999999999998433 45557766678889998 6788999999999999864 4578999999
Q ss_pred HHHHHHhh
Q 013943 407 IAQDIESC 414 (433)
Q Consensus 407 ~a~~i~~~ 414 (433)
+|++|.+.
T Consensus 329 aa~~i~g~ 336 (466)
T PRK07818 329 AAETIAGA 336 (466)
T ss_pred HHHHHcCC
Confidence 99999853
No 33
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.97 E-value=1.5e-30 Score=258.14 Aligned_cols=289 Identities=15% Similarity=0.210 Sum_probs=196.8
Q ss_pred CeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 35 GPVIVGAGPSGLATAACLKERG--IPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
+|+|||||++|+++|..|++.+ .+|+|||+++.++ |.... ++.+. ...+....++..+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~~--------------~~~~~----~~~~~~~~~~~~~ 61 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGACG--------------LPYFV----GGFFDDPNTMIAR 61 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecCC--------------CceEe----ccccCCHHHhhcC
Confidence 6999999999999999999875 4899999998542 11000 00000 0001223344444
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCceee
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRH 192 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~~ 192 (433)
..+.+.+.+++++++++|+.++.++ +.+++.... .++...+.||+||+||| ++|..|+++|.+.- .+.+
T Consensus 62 ~~~~~~~~gv~~~~~~~V~~id~~~--~~v~~~~~~-----~~~~~~~~yd~lviAtG--~~~~~~~i~g~~~~--~v~~ 130 (444)
T PRK09564 62 TPEEFIKSGIDVKTEHEVVKVDAKN--KTITVKNLK-----TGSIFNDTYDKLMIATG--ARPIIPPIKNINLE--NVYT 130 (444)
T ss_pred CHHHHHHCCCeEEecCEEEEEECCC--CEEEEEECC-----CCCEEEecCCEEEECCC--CCCCCCCCCCcCCC--CEEE
Confidence 4555667799988899999998866 454444311 11122344999999999 78888888886431 1222
Q ss_pred ccCCCCC-------CCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHH
Q 013943 193 TSLYKSG-------EDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRL 265 (433)
Q Consensus 193 ~~~~~~~-------~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~ 265 (433)
...+.+. ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ ++++.. +++..
T Consensus 131 ~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~----------------~~~~~ 193 (444)
T PRK09564 131 LKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDS----------------FDKEI 193 (444)
T ss_pred ECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchh----------------cCHHH
Confidence 2222111 12346899999999999999999999999999998877 343311 01111
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCe---EEEcCCcE
Q 013943 266 VDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYA---VEFVNGRC 340 (433)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~---v~~~~g~~ 340 (433)
.+ ...+.+++.+|+++.+ +.++..++ ....++.+
T Consensus 194 ~~-----------------------------------------~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~ 232 (444)
T PRK09564 194 TD-----------------------------------------VMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGE 232 (444)
T ss_pred HH-----------------------------------------HHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCE
Confidence 11 1123345567777765 66665432 12235567
Q ss_pred ecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc-------------cccchhhHHHH
Q 013943 341 ENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-------------LLGVAMDAKRI 407 (433)
Q Consensus 341 ~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-------------~~~a~~~g~~~ 407 (433)
+++|.+|+|+|+.|+. .++++.++..+++|++.+| ++++|+.|+|||+|||+.. ...|..+|+.+
T Consensus 233 i~~d~vi~a~G~~p~~-~~l~~~gl~~~~~g~i~vd-~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~ 310 (444)
T PRK09564 233 YEADVVIVATGVKPNT-EFLEDTGLKTLKNGAIIVD-EYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMV 310 (444)
T ss_pred EEcCEEEECcCCCcCH-HHHHhcCccccCCCCEEEC-CCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHH
Confidence 9999999999999998 6788888766678999999 5678899999999999852 23688999999
Q ss_pred HHHHHhh
Q 013943 408 AQDIESC 414 (433)
Q Consensus 408 a~~i~~~ 414 (433)
|++|.+.
T Consensus 311 a~ni~g~ 317 (444)
T PRK09564 311 GENLAGR 317 (444)
T ss_pred HHHhcCC
Confidence 9999863
No 34
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.97 E-value=9e-30 Score=252.70 Aligned_cols=309 Identities=17% Similarity=0.148 Sum_probs=201.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc-ccccCceeeecCCce---------eecCCC---CCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ-LKTYDRLRLHLPKQF---------CELPLM---GFPSE 99 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~-~~~~~~~~~~~~~~~---------~~~~~~---~~~~~ 99 (433)
|+||+|||+|++|+.+|..+.+.|.+|+++|+.. +||... ..+.|.-.+.....+ +.+... ...-+
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 6799999999999999999999999999999875 777543 333333211111000 000000 00000
Q ss_pred CCCCC-CH----HHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 100 FPTYP-SK----QQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 100 ~~~~~-~~----~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
+.... .. +.+...+.+.+++.+++++.+ +++.++...+...+.|...+| +...+.||+||+||| ++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g------~~~~~~~d~lViATG--s~ 150 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADG------GEETLDADVVLIATG--AS 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCC------ceEEEecCEEEEcCC--CC
Confidence 10000 01 111233445566677887665 344433111225556655443 124799999999999 77
Q ss_pred CccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhh
Q 013943 175 AVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLS 254 (433)
Q Consensus 175 p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~ 254 (433)
|..|+.++... ..+++.....+ ....+++++|||+|.+|+|+|..|++.|.+||++.+.+ +++|..+. .
T Consensus 151 p~~~p~~~~~~--~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~-----~-- 219 (466)
T PRK07845 151 PRILPTAEPDG--ERILTWRQLYD-LDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDA-----D-- 219 (466)
T ss_pred CCCCCCCCCCC--ceEEeehhhhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCH-----H--
Confidence 77665443321 12333333322 22346899999999999999999999999999999887 56554322 0
Q ss_pred HHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--C
Q 013943 255 MWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK--R 330 (433)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~ 330 (433)
....+.+.+++.+|+++.+ +.++. +
T Consensus 220 ---------------------------------------------------~~~~l~~~L~~~gV~i~~~~~v~~v~~~~ 248 (466)
T PRK07845 220 ---------------------------------------------------AAEVLEEVFARRGMTVLKRSRAESVERTG 248 (466)
T ss_pred ---------------------------------------------------HHHHHHHHHHHCCcEEEcCCEEEEEEEeC
Confidence 0011124455678888876 66664 3
Q ss_pred Ce--EEEcCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhH
Q 013943 331 YA--VEFVNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDA 404 (433)
Q Consensus 331 ~~--v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g 404 (433)
++ +.+.+|+++++|.||+|+|+.||...+ +.+.++..+++|++.+| ++++|+.|+|||+||++.. +..|..+|
T Consensus 249 ~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g 327 (466)
T PRK07845 249 DGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVD-RVSRTSVPGIYAAGDCTGVLPLASVAAMQG 327 (466)
T ss_pred CEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeEC-CCcccCCCCEEEEeeccCCccchhHHHHHH
Confidence 33 455688889999999999999998433 45567776778999998 6788999999999999964 55789999
Q ss_pred HHHHHHHHhh
Q 013943 405 KRIAQDIESC 414 (433)
Q Consensus 405 ~~~a~~i~~~ 414 (433)
..+++++.+.
T Consensus 328 ~~aa~~i~g~ 337 (466)
T PRK07845 328 RIAMYHALGE 337 (466)
T ss_pred HHHHHHHcCC
Confidence 9999999853
No 35
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=2.6e-30 Score=255.44 Aligned_cols=298 Identities=17% Similarity=0.174 Sum_probs=192.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC-CCCc-ccccccCceeeecCCceeecCCCCCCCCCCCCC-CHHH-
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNC-IASL-WQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYP-SKQQ- 108 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~-~gg~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 108 (433)
.|||+||||||||+++|..|++.|.+|+|+|+++. +||. ....+.|...+...... .. ++.... ..+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~----~~----~~~~~~~~~~~~ 74 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK----NL----SFEQVMATKNTV 74 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc----CC----CHHHHHHHHHHH
Confidence 59999999999999999999999999999999864 5774 33333332111111100 00 110000 0111
Q ss_pred ---HHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCC
Q 013943 109 ---FVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDE 185 (433)
Q Consensus 109 ---~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~ 185 (433)
+.....+.+.+.+++++.++ ...+ +. ..+.+...++ ...+.||+||+||| ++|+.|++||...
T Consensus 75 ~~~~~~~~~~~~~~~gV~~~~g~-~~~~--~~--~~v~v~~~~~-------~~~~~~d~vViATG--s~~~~p~i~G~~~ 140 (438)
T PRK07251 75 TSRLRGKNYAMLAGSGVDLYDAE-AHFV--SN--KVIEVQAGDE-------KIELTAETIVINTG--AVSNVLPIPGLAD 140 (438)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEE-EEEc--cC--CEEEEeeCCC-------cEEEEcCEEEEeCC--CCCCCCCCCCcCC
Confidence 11122233445566655543 2111 11 3433332111 25799999999999 7888888988653
Q ss_pred CCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHH
Q 013943 186 FGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRL 265 (433)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~ 265 (433)
..+ ++.+.... .....+++++|||+|.+|+|+|..+++.|.+|+++.+.+ +++|..+. ...
T Consensus 141 ~~~-v~~~~~~~-~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~-----~~~----------- 201 (438)
T PRK07251 141 SKH-VYDSTGIQ-SLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEP-----SVA----------- 201 (438)
T ss_pred CCc-EEchHHHh-cchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCH-----HHH-----------
Confidence 321 22222222 223457899999999999999999999999999999988 55554321 000
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC--eEE-EcCCcE
Q 013943 266 VDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY--AVE-FVNGRC 340 (433)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~v~-~~~g~~ 340 (433)
....+.+++.+|+++.+ +.+++.+ .+. ..++++
T Consensus 202 ------------------------------------------~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~ 239 (438)
T PRK07251 202 ------------------------------------------ALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDET 239 (438)
T ss_pred ------------------------------------------HHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeE
Confidence 01113355567888776 6666543 333 346778
Q ss_pred ecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhHHHHHHHHHhh
Q 013943 341 ENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 341 ~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g~~~a~~i~~~ 414 (433)
+++|.||+|+|+.|+...+ ++..++..+++|++.+| ++++++.|+|||+|||+.. ...+..+|+.++.++.+.
T Consensus 240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd-~~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD-DYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC-CCcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 9999999999999998432 23345555677889998 6788999999999999975 346777888888887653
No 36
>PRK14727 putative mercuric reductase; Provisional
Probab=99.97 E-value=2.6e-30 Score=257.48 Aligned_cols=305 Identities=15% Similarity=0.137 Sum_probs=195.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccccc-ccCceeeecCCcee----ecCCCCCCCCCCCCCCH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLK-TYDRLRLHLPKQFC----ELPLMGFPSEFPTYPSK 106 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 106 (433)
..|||+|||+|++|+++|..|++.|.+|+++|+.+.+||.|... ++|...+..+.... ..+...++...+. .+.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~-~~~ 93 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS-IDR 93 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc-cCH
Confidence 45999999999999999999999999999999988899988653 33432221111110 0011111100011 122
Q ss_pred HHHHHHHHHH------------HHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 107 QQFVDYLEAY------------AKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 107 ~~~~~~l~~~------------~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
..+..+.... ++.. ++++..+. ....+. ..+.|...++ +..++.||+||+||| +
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~----a~f~~~-~~v~v~~~~g------~~~~~~~d~lViATG--s 160 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY----ARFKDG-NTLVVRLHDG------GERVLAADRCLIATG--S 160 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE----EEEecC-CEEEEEeCCC------ceEEEEeCEEEEecC--C
Confidence 2222221111 1111 33333221 122222 5666766543 125799999999999 8
Q ss_pred CCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhh
Q 013943 174 EAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGL 253 (433)
Q Consensus 174 ~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~ 253 (433)
+|..|++||..... ......... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+. .+++..+.
T Consensus 161 ~p~~p~i~G~~~~~--~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~------- 228 (479)
T PRK14727 161 TPTIPPIPGLMDTP--YWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDP------- 228 (479)
T ss_pred CCCCCCCCCcCccc--eecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchH-------
Confidence 89999998865321 111111111 1234689999999999999999999999999999874 34443221
Q ss_pred hHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--
Q 013943 254 SMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK-- 329 (433)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~-- 329 (433)
. ....+.+.+++.+|+++.+ +.++.
T Consensus 229 ----------~-----------------------------------------~~~~l~~~L~~~GV~i~~~~~V~~i~~~ 257 (479)
T PRK14727 229 ----------L-----------------------------------------LGETLTACFEKEGIEVLNNTQASLVEHD 257 (479)
T ss_pred ----------H-----------------------------------------HHHHHHHHHHhCCCEEEcCcEEEEEEEe
Confidence 0 0111123355567888765 65554
Q ss_pred CCeEEE-cCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhH
Q 013943 330 RYAVEF-VNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDA 404 (433)
Q Consensus 330 ~~~v~~-~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g 404 (433)
++++.+ .++.++++|.||+|+|+.||...+ ++..++..+++|.+.+| ++++|+.|+|||+|||+.. ...|..+|
T Consensus 258 ~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G 336 (479)
T PRK14727 258 DNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVN-PAMETSAPDIYAAGDCSDLPQFVYVAAAAG 336 (479)
T ss_pred CCEEEEEEcCCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEEC-CCeecCCCCEEEeeecCCcchhhhHHHHHH
Confidence 233332 233468999999999999998433 34457766778999999 6788999999999999964 44789999
Q ss_pred HHHHHHHHhh
Q 013943 405 KRIAQDIESC 414 (433)
Q Consensus 405 ~~~a~~i~~~ 414 (433)
+.+|.+|.+.
T Consensus 337 ~~aa~~i~g~ 346 (479)
T PRK14727 337 SRAGINMTGG 346 (479)
T ss_pred HHHHHHHcCC
Confidence 9999999754
No 37
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.97 E-value=1.8e-30 Score=259.08 Aligned_cols=305 Identities=17% Similarity=0.211 Sum_probs=193.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--------CCCCc-ccccccCceeeecCCceee-c----CCCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSN--------CIASL-WQLKTYDRLRLHLPKQFCE-L----PLMGFPS 98 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~--------~~gg~-w~~~~~~~~~~~~~~~~~~-~----~~~~~~~ 98 (433)
+|||+||||||+|+++|..+.+.|.+|+|+|+.. .+||. ....++|.-.+........ + ..+.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~- 83 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK- 83 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC-
Confidence 6999999999999999999999999999999632 37774 3444455321111100000 0 001110
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEE------eCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCC
Q 013943 99 EFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEY------DATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGEN 172 (433)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~------~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~ 172 (433)
...-....++.+++...+++++..+....++..++. ..+... |...+ .++...++||+||+|||
T Consensus 84 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~--v~v~~-----~~~~~~i~~d~lIIATG-- 153 (499)
T PTZ00052 84 -TSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHT--VSYGD-----NSQEETITAKYILIATG-- 153 (499)
T ss_pred -CCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCE--EEEee-----CCCceEEECCEEEEecC--
Confidence 011245667777777766655444322222211111 111123 33322 11125799999999999
Q ss_pred CCCccCC-ccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcch
Q 013943 173 AEAVVPE-IEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTF 251 (433)
Q Consensus 173 ~~p~~p~-~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~ 251 (433)
++|..|. +||...+ ...+.... .....+++++|||+|.+|+|+|..|++.|.+||++.+. .+++..+.
T Consensus 154 s~p~~p~~i~G~~~~---~~~~~~~~-~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~----- 222 (499)
T PTZ00052 154 GRPSIPEDVPGAKEY---SITSDDIF-SLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFDR----- 222 (499)
T ss_pred CCCCCCCCCCCccce---eecHHHHh-hhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCCH-----
Confidence 8888874 7876432 12221121 12234679999999999999999999999999999874 33343221
Q ss_pred hhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe
Q 013943 252 GLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK 329 (433)
Q Consensus 252 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~ 329 (433)
. ....+.+.+++.+|+++.+ +.++.
T Consensus 223 ------------~-----------------------------------------~~~~l~~~l~~~GV~i~~~~~v~~v~ 249 (499)
T PTZ00052 223 ------------Q-----------------------------------------CSEKVVEYMKEQGTLFLEGVVPINIE 249 (499)
T ss_pred ------------H-----------------------------------------HHHHHHHHHHHcCCEEEcCCeEEEEE
Confidence 0 1111224455567888776 44554
Q ss_pred C--C--eEEEcCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc----cccc
Q 013943 330 R--Y--AVEFVNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG----LLGV 400 (433)
Q Consensus 330 ~--~--~v~~~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~----~~~a 400 (433)
. + .+.+.+|+++++|.||+|+|+.||...+ +.+.++..+++|+++++. . +|+.|+|||+|||+.. +..|
T Consensus 250 ~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~-~-~Ts~p~IyAiGDv~~~~~~l~~~A 327 (499)
T PTZ00052 250 KMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPN-D-CTNIPNIFAVGDVVEGRPELTPVA 327 (499)
T ss_pred EcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCC-C-cCCCCCEEEEEEecCCCcccHHHH
Confidence 2 2 3556788889999999999999998433 245577767788766552 3 8999999999998842 4478
Q ss_pred hhhHHHHHHHHHhh
Q 013943 401 AMDAKRIAQDIESC 414 (433)
Q Consensus 401 ~~~g~~~a~~i~~~ 414 (433)
..+|+.+|++|.+.
T Consensus 328 ~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 328 IKAGILLARRLFKQ 341 (499)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999753
No 38
>PRK13748 putative mercuric reductase; Provisional
Probab=99.97 E-value=3.2e-30 Score=262.77 Aligned_cols=302 Identities=16% Similarity=0.149 Sum_probs=195.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc-cccCceeeecCCcee-ecCCCC----CCCCCCCCCCH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL-KTYDRLRLHLPKQFC-ELPLMG----FPSEFPTYPSK 106 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~ 106 (433)
.|||+||||||+|+++|..|++.|.+|+|||++ .+||.|.. .++|...+..+.... .....+ ++...+ ....
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 175 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP-TIDR 175 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCC-ccCH
Confidence 599999999999999999999999999999998 78998754 334432221111000 000011 100111 1233
Q ss_pred HHHHHHHHHH------------HHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 107 QQFVDYLEAY------------AKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 107 ~~~~~~l~~~------------~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
..+.++.... +... ++++..+ ++..++ . ..+.|...++ +...++||+||+||| +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~--~~~~v~~~~g------~~~~~~~d~lviAtG--s 242 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKD--D--QTLIVRLNDG------GERVVAFDRCLIATG--A 242 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEec--C--CEEEEEeCCC------ceEEEEcCEEEEcCC--C
Confidence 3333332221 2222 3444333 333322 1 4566665443 124799999999999 8
Q ss_pred CCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhh
Q 013943 174 EAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGL 253 (433)
Q Consensus 174 ~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~ 253 (433)
+|.+|++||.+... ........ .....+++++|||+|++|+|+|..|.+.|.+|+++.|.+ +++..+. .
T Consensus 243 ~p~~p~i~g~~~~~--~~~~~~~~-~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~--~l~~~d~-----~- 311 (561)
T PRK13748 243 SPAVPPIPGLKETP--YWTSTEAL-VSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARST--LFFREDP-----A- 311 (561)
T ss_pred CCCCCCCCCCCccc--eEccHHHh-hcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--cccccCH-----H-
Confidence 89999998875421 11111111 122356899999999999999999999999999998853 3443221 0
Q ss_pred hHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC-
Q 013943 254 SMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR- 330 (433)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~- 330 (433)
....+.+.+++.+|+++.+ +.++..
T Consensus 312 ----------------------------------------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~~ 339 (561)
T PRK13748 312 ----------------------------------------------------IGEAVTAAFRAEGIEVLEHTQASQVAHV 339 (561)
T ss_pred ----------------------------------------------------HHHHHHHHHHHCCCEEEcCCEEEEEEec
Confidence 0111123455567888776 666643
Q ss_pred -CeEEE-cCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhH
Q 013943 331 -YAVEF-VNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDA 404 (433)
Q Consensus 331 -~~v~~-~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g 404 (433)
+.+.+ .++.++++|.||+|+|+.||...+ +.+.++..+++|++.+| ++++|+.|||||+|||+.. +..|..+|
T Consensus 340 ~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~g 418 (561)
T PRK13748 340 DGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVID-QGMRTSVPHIYAAGDCTDQPQFVYVAAAAG 418 (561)
T ss_pred CCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeEC-CCcccCCCCEEEeeecCCCccchhHHHHHH
Confidence 23322 233469999999999999998433 45567777778999999 6888999999999999864 45789999
Q ss_pred HHHHHHHHh
Q 013943 405 KRIAQDIES 413 (433)
Q Consensus 405 ~~~a~~i~~ 413 (433)
+.+|.+|.+
T Consensus 419 ~~aa~~i~g 427 (561)
T PRK13748 419 TRAAINMTG 427 (561)
T ss_pred HHHHHHHcC
Confidence 999999975
No 39
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=254.69 Aligned_cols=283 Identities=16% Similarity=0.163 Sum_probs=191.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGI--PSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
.++|+|||||+||+.+|..|++.+. +|++++++..+. |... ..++.+..- ...+. .....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~--~l~~~~~~~---~~~~~--~~~~~---- 64 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERP--PLSKSMLLE---DSPQL--QQVLP---- 64 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCC--CCCHHHHCC---CCccc--cccCC----
Confidence 4689999999999999999999876 899999987442 1110 011100000 00000 00111
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
.++..+.+++++.++.|+.++... .. +.+.++ ..+.||+||+||| ++|+.+++++... ..+
T Consensus 65 ---~~~~~~~~i~~~~g~~V~~id~~~--~~--v~~~~g--------~~~~yd~LViATG--s~~~~~p~~~~~~--~~v 125 (396)
T PRK09754 65 ---ANWWQENNVHLHSGVTIKTLGRDT--RE--LVLTNG--------ESWHWDQLFIATG--AAARPLPLLDALG--ERC 125 (396)
T ss_pred ---HHHHHHCCCEEEcCCEEEEEECCC--CE--EEECCC--------CEEEcCEEEEccC--CCCCCCCCCCcCC--CCE
Confidence 123445689999999999998765 33 666665 6799999999999 7776665554321 112
Q ss_pred eeccCCCC-----CCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHH
Q 013943 191 RHTSLYKS-----GEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRL 265 (433)
Q Consensus 191 ~~~~~~~~-----~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~ 265 (433)
+......+ .....+++++|||+|.+|+|+|..|.+.|.+||++.+.+ +++++.. ++.
T Consensus 126 ~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~----------------~~~- 187 (396)
T PRK09754 126 FTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRNA----------------PPP- 187 (396)
T ss_pred EecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhhc----------------CHH-
Confidence 21111111 112347899999999999999999999999999999887 4443211 111
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC---eEEEcCCcE
Q 013943 266 VDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY---AVEFVNGRC 340 (433)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~---~v~~~~g~~ 340 (433)
....+.+.+++.+|+++.+ +.++..+ .+.+.+|++
T Consensus 188 ----------------------------------------~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~ 227 (396)
T PRK09754 188 ----------------------------------------VQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGET 227 (396)
T ss_pred ----------------------------------------HHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCE
Confidence 1111123355567888766 6777543 256788999
Q ss_pred ecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc------------cccchhhHHHHH
Q 013943 341 ENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG------------LLGVAMDAKRIA 408 (433)
Q Consensus 341 ~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~------------~~~a~~~g~~~a 408 (433)
+++|.||+|+|..||. .|+++.++.. + +.+++| ++++|+.|+|||+|||+.. +..|..+|+.+|
T Consensus 228 i~aD~Vv~a~G~~pn~-~l~~~~gl~~-~-~gi~vd-~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa 303 (396)
T PRK09754 228 LQADVVIYGIGISAND-QLAREANLDT-A-NGIVID-EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAA 303 (396)
T ss_pred EECCEEEECCCCChhh-HHHHhcCCCc-C-CCEEEC-CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHH
Confidence 9999999999999997 5777777755 3 457888 6788999999999999842 135889999999
Q ss_pred HHHHhh
Q 013943 409 QDIESC 414 (433)
Q Consensus 409 ~~i~~~ 414 (433)
++|.+.
T Consensus 304 ~ni~g~ 309 (396)
T PRK09754 304 AAMLGL 309 (396)
T ss_pred HHhcCC
Confidence 999864
No 40
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=6.5e-30 Score=253.73 Aligned_cols=305 Identities=16% Similarity=0.138 Sum_probs=188.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccccCceeeecCCceee-cCC---CCCCCCCCCCCCHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW-QLKTYDRLRLHLPKQFCE-LPL---MGFPSEFPTYPSKQ 107 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~ 107 (433)
.|||+|||+||+|+++|..+++.|.+|+++|+...+||.. ...+.|.-.+......+. +.. ..+.-....-....
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 4899999999999999999999999999999877788853 333444322211111100 000 00000000001112
Q ss_pred HHH-----------HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 108 QFV-----------DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 108 ~~~-----------~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
++. .......+..++++..+. . ....+ ..+.+...++ +...++||+|||||| ++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a--~~~~~-~~v~v~~~~g------~~~~~~~d~lVIATG--s~p~ 149 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGW--G--RLDGV-GKVVVKAEDG------SETQLEAKDIVIATG--SEPT 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--E--EEccC-CEEEEEcCCC------ceEEEEeCEEEEeCC--CCCC
Confidence 111 122223334455544442 1 22222 4455554433 124799999999999 6664
Q ss_pred cCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHH
Q 013943 177 VPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMW 256 (433)
Q Consensus 177 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~ 256 (433)
++||........+.+..... ....+++++|||+|.+|+|+|..+.+.|.+|+++.+.+ +++|..+. .
T Consensus 150 --~ipg~~~~~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~-----~---- 216 (466)
T PRK06115 150 --PLPGVTIDNQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDT-----E---- 216 (466)
T ss_pred --CCCCCCCCCCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCH-----H----
Confidence 34554321112232222222 22357899999999999999999999999999999887 56553221 0
Q ss_pred HHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC--Ce
Q 013943 257 LLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR--YA 332 (433)
Q Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~~ 332 (433)
....+.+.+++.+|+++.+ +.++.. ++
T Consensus 217 -------------------------------------------------~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~ 247 (466)
T PRK06115 217 -------------------------------------------------TAKTLQKALTKQGMKFKLGSKVTGATAGADG 247 (466)
T ss_pred -------------------------------------------------HHHHHHHHHHhcCCEEEECcEEEEEEEcCCe
Confidence 0011123455567888876 666653 23
Q ss_pred E--EEc---C--CcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccch
Q 013943 333 V--EFV---N--GRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVA 401 (433)
Q Consensus 333 v--~~~---~--g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~ 401 (433)
+ .+. + ++++++|.||+|+|+.||...+ +...++..+++| +++| ++++|+.|+|||+|||+.. ...|.
T Consensus 248 v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd-~~~~Ts~~~IyA~GD~~~~~~la~~A~ 325 (466)
T PRK06115 248 VSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLAN-DHHRTSVPGVWVIGDVTSGPMLAHKAE 325 (466)
T ss_pred EEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEEC-CCeecCCCCEEEeeecCCCcccHHHHH
Confidence 3 232 2 3569999999999999998433 334466655667 4556 5788999999999999964 44789
Q ss_pred hhHHHHHHHHHhh
Q 013943 402 MDAKRIAQDIESC 414 (433)
Q Consensus 402 ~~g~~~a~~i~~~ 414 (433)
.+|+.+|++|.+.
T Consensus 326 ~~g~~aa~~i~~~ 338 (466)
T PRK06115 326 DEAVACIERIAGK 338 (466)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999864
No 41
>PRK07846 mycothione reductase; Reviewed
Probab=99.97 E-value=2.3e-30 Score=255.51 Aligned_cols=295 Identities=14% Similarity=0.117 Sum_probs=190.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-cccccccCceeeecCCceee-c---CCCCCCCCCCCCCCHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS-LWQLKTYDRLRLHLPKQFCE-L---PLMGFPSEFPTYPSKQQ 108 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~ 108 (433)
|||+|||+||+|..+|.. ..|.+|+++|+.. +|| +.+..+.|.-.+..+..... + ..+..... ..-.+..+
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~~ 77 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWPD 77 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHHH
Confidence 899999999999998876 4699999999864 565 44554555432221111110 0 00000000 00123333
Q ss_pred HHHHHHHHH-------------HHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 109 FVDYLEAYA-------------KRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 109 ~~~~l~~~~-------------~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
+.++..... ++.++++..+. ..-+ ++ .. |++.++ ..++||+||+||| ++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~--~~--V~v~~g--------~~~~~d~lViATG--s~p 140 (451)
T PRK07846 78 IVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-ARFI--GP--KT--LRTGDG--------EEITADQVVIAAG--SRP 140 (451)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-EEEe--cC--CE--EEECCC--------CEEEeCEEEEcCC--CCC
Confidence 443333222 22344433332 1111 11 33 555554 5799999999999 889
Q ss_pred ccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhH
Q 013943 176 VVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSM 255 (433)
Q Consensus 176 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~ 255 (433)
..|+++|.... .+++..........+++++|||+|++|+|+|..|++.|.+|+++.|.+ .+++..+.
T Consensus 141 ~~p~i~g~~~~---~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~--------- 207 (451)
T PRK07846 141 VIPPVIADSGV---RYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDD--------- 207 (451)
T ss_pred CCCCCCCcCCc---cEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCH---------
Confidence 99988885431 123322222223357899999999999999999999999999999988 45443221
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC--
Q 013943 256 WLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY-- 331 (433)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-- 331 (433)
...+. +.+.+ +.+|+++.+ +.+++.+
T Consensus 208 --------~~~~~-----------------------------------------l~~l~-~~~v~i~~~~~v~~i~~~~~ 237 (451)
T PRK07846 208 --------DISER-----------------------------------------FTELA-SKRWDVRLGRNVVGVSQDGS 237 (451)
T ss_pred --------HHHHH-----------------------------------------HHHHH-hcCeEEEeCCEEEEEEEcCC
Confidence 00000 01112 235777665 6666532
Q ss_pred e--EEEcCCcEecccEEEEccCCCCCCCCcc--ccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhH
Q 013943 332 A--VEFVNGRCENFDAIILATGYRSNVPSWL--KESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDA 404 (433)
Q Consensus 332 ~--v~~~~g~~~~~D~vi~atG~~~~~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g 404 (433)
+ +.+.+++++++|.||+|+|+.|+. .++ ++.++..+++|++.+| ++++|+.|+|||+||++.. ...|..+|
T Consensus 238 ~v~v~~~~g~~i~~D~vl~a~G~~pn~-~~l~~~~~gl~~~~~G~i~Vd-~~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g 315 (451)
T PRK07846 238 GVTLRLDDGSTVEADVLLVATGRVPNG-DLLDAAAAGVDVDEDGRVVVD-EYQRTSAEGVFALGDVSSPYQLKHVANHEA 315 (451)
T ss_pred EEEEEECCCcEeecCEEEEEECCccCc-cccCchhcCceECCCCcEeEC-CCcccCCCCEEEEeecCCCccChhHHHHHH
Confidence 2 556678889999999999999998 454 4557777788999999 6788999999999999964 44789999
Q ss_pred HHHHHHHHhh
Q 013943 405 KRIAQDIESC 414 (433)
Q Consensus 405 ~~~a~~i~~~ 414 (433)
+.+|++|.+.
T Consensus 316 ~~~a~ni~~~ 325 (451)
T PRK07846 316 RVVQHNLLHP 325 (451)
T ss_pred HHHHHHHcCC
Confidence 9999999754
No 42
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=6.7e-30 Score=254.45 Aligned_cols=309 Identities=17% Similarity=0.160 Sum_probs=195.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEec------CCCCCCccccc-ccCceeeecCCce-e---------ecCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLER------SNCIASLWQLK-TYDRLRLHLPKQF-C---------ELPLM 94 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~------~~~~gg~w~~~-~~~~~~~~~~~~~-~---------~~~~~ 94 (433)
..|||+||||||+|+++|..+++.|.+|+++|+ ...+||.|... ++|...+...... . .+...
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 469999999999999999999999999999998 35678876542 2222111000000 0 00000
Q ss_pred CCCCCCCCCCC-HHHHH----HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEcc
Q 013943 95 GFPSEFPTYPS-KQQFV----DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVAT 169 (433)
Q Consensus 95 ~~~~~~~~~~~-~~~~~----~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAt 169 (433)
..+.+++.... .+.+. ....++++..++++..+ ++..++... ..++|.+..+ + ..+++||+||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~--~~~~v~v~~~----~--~~~~~~d~lViAT 153 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTD--AGYEIKVTGE----D--ETVITAKHVIIAT 153 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCC--CCCEEEEecC----C--CeEEEeCEEEEeC
Confidence 00001111111 11122 23334445556766554 345555433 2345555421 0 1589999999999
Q ss_pred CCCCCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCc
Q 013943 170 GENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKS 249 (433)
Q Consensus 170 G~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~ 249 (433)
| ++|..++ +.. +.+..++++.........+++++|||+|.+|+|+|..|.+.|.+|+++.+++ .++|..+.
T Consensus 154 G--s~p~~~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~--- 224 (475)
T PRK06327 154 G--SEPRHLP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AFLAAADE--- 224 (475)
T ss_pred C--CCCCCCC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-ccCCcCCH---
Confidence 9 6665432 221 1222334433222233457899999999999999999999999999999988 45443211
Q ss_pred chhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceE
Q 013943 250 TFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKR 327 (433)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~ 327 (433)
. +.....+.+++.+|+++.+ +.+
T Consensus 225 --------------~-----------------------------------------~~~~~~~~l~~~gi~i~~~~~v~~ 249 (475)
T PRK06327 225 --------------Q-----------------------------------------VAKEAAKAFTKQGLDIHLGVKIGE 249 (475)
T ss_pred --------------H-----------------------------------------HHHHHHHHHHHcCcEEEeCcEEEE
Confidence 0 0111123345567888876 666
Q ss_pred EeCC--e--EEEcC--C--cEecccEEEEccCCCCCCCCcc-ccccccccCCCCcCCCCCCCCCCCCceEEeeecccc--
Q 013943 328 LKRY--A--VEFVN--G--RCENFDAIILATGYRSNVPSWL-KESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-- 396 (433)
Q Consensus 328 ~~~~--~--v~~~~--g--~~~~~D~vi~atG~~~~~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-- 396 (433)
++.+ + +.+.+ | +++++|.||+|+|+.|+...+. +..++..+++|++.+| +.++|+.|+|||+|||+..
T Consensus 250 i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd-~~~~Ts~~~VyA~GD~~~~~~ 328 (475)
T PRK06327 250 IKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVD-DHCRTNVPNVYAIGDVVRGPM 328 (475)
T ss_pred EEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeEC-CCCccCCCCEEEEEeccCCcc
Confidence 6533 3 34443 3 4699999999999999985433 4457766788999998 6778999999999999864
Q ss_pred -cccchhhHHHHHHHHHhh
Q 013943 397 -LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 397 -~~~a~~~g~~~a~~i~~~ 414 (433)
...|..+|..+|++|.+.
T Consensus 329 ~~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 329 LAHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred hHHHHHHHHHHHHHHHcCC
Confidence 447899999999999753
No 43
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=1.4e-29 Score=252.32 Aligned_cols=303 Identities=15% Similarity=0.158 Sum_probs=197.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc-cccCceeeecCCcee----ecCCCCCCCCCCCCCCHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL-KTYDRLRLHLPKQFC----ELPLMGFPSEFPTYPSKQ 107 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 107 (433)
+|||+|||||++|+++|..|++.|.+|+|+|+ +.+||.|.. .++|.-.+......+ ....+..... ....+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHH
Confidence 48999999999999999999999999999999 778987654 233321111111000 0000000000 0001222
Q ss_pred HHHH-----------HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 108 QFVD-----------YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 108 ~~~~-----------~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
.+.+ ...+.+++.++++..+. +..++ . ..+.+...++ ...+.||+||+||| ++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~--~--~~~~v~~~~g-------~~~~~~d~lVlAtG--~~p~ 144 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGE-AKFLD--P--GTVLVTGENG-------EETLTAKNIIIATG--SRPR 144 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc--C--CEEEEecCCC-------cEEEEeCEEEEcCC--CCCC
Confidence 2222 22334445566655543 22222 2 4555554432 25799999999999 7787
Q ss_pred cCCcc-CCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhH
Q 013943 177 VPEIE-GSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSM 255 (433)
Q Consensus 177 ~p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~ 255 (433)
.|+++ +.. +..++++.........+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++|..+.
T Consensus 145 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~--------- 211 (461)
T TIGR01350 145 SLPGPFDFD---GEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDA--------- 211 (461)
T ss_pred CCCCCCCCC---CceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCH---------
Confidence 77665 222 22233333222233457899999999999999999999999999999988 45443211
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--CC
Q 013943 256 WLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK--RY 331 (433)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~ 331 (433)
.. .....+.+++.+|+++.+ +.++. ++
T Consensus 212 --------~~-----------------------------------------~~~~~~~l~~~gi~i~~~~~v~~i~~~~~ 242 (461)
T TIGR01350 212 --------EV-----------------------------------------SKVVAKALKKKGVKILTNTKVTAVEKNDD 242 (461)
T ss_pred --------HH-----------------------------------------HHHHHHHHHHcCCEEEeCCEEEEEEEeCC
Confidence 00 011123455567888776 66654 33
Q ss_pred eE--EEcCC--cEecccEEEEccCCCCCCCC-ccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhh
Q 013943 332 AV--EFVNG--RCENFDAIILATGYRSNVPS-WLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMD 403 (433)
Q Consensus 332 ~v--~~~~g--~~~~~D~vi~atG~~~~~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~ 403 (433)
++ .+.+| +++++|.||+|+|+.|+... +++..++..+++|++.+| +.++++.|+|||+|||+.. ...|..+
T Consensus 243 ~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd-~~l~t~~~~IyaiGD~~~~~~~~~~A~~~ 321 (461)
T TIGR01350 243 QVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVD-EYMRTNVPGIYAIGDVIGGPMLAHVASHE 321 (461)
T ss_pred EEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeC-CCcccCCCCEEEeeecCCCcccHHHHHHH
Confidence 44 33456 47999999999999999843 456667777788999998 6788899999999999854 4578999
Q ss_pred HHHHHHHHHhh
Q 013943 404 AKRIAQDIESC 414 (433)
Q Consensus 404 g~~~a~~i~~~ 414 (433)
|+.+|++|.+.
T Consensus 322 g~~aa~~i~~~ 332 (461)
T TIGR01350 322 GIVAAENIAGK 332 (461)
T ss_pred HHHHHHHHcCC
Confidence 99999999864
No 44
>PTZ00058 glutathione reductase; Provisional
Probab=99.97 E-value=1.7e-29 Score=252.60 Aligned_cols=304 Identities=14% Similarity=0.189 Sum_probs=195.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-cccccccCceeeecCCceee----cCCCCCC----CCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS-LWQLKTYDRLRLHLPKQFCE----LPLMGFP----SEFPT 102 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~ 102 (433)
..|||+|||||++|+++|..+++.|.+|++||++ .+|| +.+..+.|.-.+........ ...+.+. .+++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 4589999999999999999999999999999997 5676 44445555433322222111 0001110 01111
Q ss_pred CC-CHHHHH----HHHHHHHHHcCCcceecce-EEE---EE-----E------eCCCCeEEEE------EeecCcCCCce
Q 013943 103 YP-SKQQFV----DYLEAYAKRFEIRPRFNET-VSQ---AE-----Y------DATIRFWRVK------TTVGGQKCGVE 156 (433)
Q Consensus 103 ~~-~~~~~~----~~l~~~~~~~~l~~~~~~~-v~~---v~-----~------~~~~~~~~v~------~~~g~~~~~~~ 156 (433)
.. ..+++. +.+.+.++..++++..+.- +.+ +. . ..+...++|. ..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g------- 198 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG------- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC-------
Confidence 10 122222 2233445556777655432 111 00 0 0000122232 1222
Q ss_pred eEEEEeCEEEEccCCCCCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEec
Q 013943 157 EMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRD 236 (433)
Q Consensus 157 ~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~ 236 (433)
..++||+||+||| ++|..|+++|.+ ....+..+.... .+++++|||+|.+|+|+|..+.+.|.+||++.++
T Consensus 199 -~~i~ad~lVIATG--S~P~~P~IpG~~----~v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~ 269 (561)
T PTZ00058 199 -QVIEGKNILIAVG--NKPIFPDVKGKE----FTISSDDFFKIK--EAKRIGIAGSGYIAVELINVVNRLGAESYIFARG 269 (561)
T ss_pred -cEEECCEEEEecC--CCCCCCCCCCce----eEEEHHHHhhcc--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEec
Confidence 5799999999999 889999988864 123332222221 2789999999999999999999999999999998
Q ss_pred CcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhc
Q 013943 237 TVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKS 316 (433)
Q Consensus 237 ~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (433)
+ +++|..+. . ....+.+.+++
T Consensus 270 ~-~il~~~d~-----------------~-----------------------------------------i~~~l~~~L~~ 290 (561)
T PTZ00058 270 N-RLLRKFDE-----------------T-----------------------------------------IINELENDMKK 290 (561)
T ss_pred c-cccccCCH-----------------H-----------------------------------------HHHHHHHHHHH
Confidence 8 56554322 0 11112244556
Q ss_pred CCeEEecC--ceEEeCC---eE--EEcCC-cEecccEEEEccCCCCCCCCcccc--ccccccCCCCcCCCCCCCCCCCCc
Q 013943 317 GHIRVFPG--IKRLKRY---AV--EFVNG-RCENFDAIILATGYRSNVPSWLKE--SEMFSRKDGLPRRPFPNGWKGESG 386 (433)
Q Consensus 317 ~~v~~~~~--v~~~~~~---~v--~~~~g-~~~~~D~vi~atG~~~~~~~~~~~--~~l~~~~~g~~~~~~~~~~~~~~~ 386 (433)
.+|+++.+ +.+++.+ ++ .+.++ +++++|.|++|+|+.|+. .++.. .++.. ++|++.+| ++++|+.|+
T Consensus 291 ~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~-~~L~l~~~~~~~-~~G~I~VD-e~lqTs~p~ 367 (561)
T PTZ00058 291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT-EDLNLKALNIKT-PKGYIKVD-DNQRTSVKH 367 (561)
T ss_pred CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCc-cccCccccceec-CCCeEEEC-cCCccCCCC
Confidence 78888876 6666542 23 33344 579999999999999998 44432 23433 67899999 678899999
Q ss_pred eEEeeeccc----------------------------------c---cccchhhHHHHHHHHHhh
Q 013943 387 LYSVGFTKR----------------------------------G---LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 387 iya~Gd~~~----------------------------------~---~~~a~~~g~~~a~~i~~~ 414 (433)
|||+|||+. . ...|..+|+.+|++|.+.
T Consensus 368 IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 368 IYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred EEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 999999987 2 225899999999999764
No 45
>PRK14694 putative mercuric reductase; Provisional
Probab=99.97 E-value=1.1e-29 Score=252.52 Aligned_cols=305 Identities=18% Similarity=0.168 Sum_probs=197.0
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccccc-ccCceeeecCCceee-cCCCCCCCCC---CCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLK-TYDRLRLHLPKQFCE-LPLMGFPSEF---PTYPS 105 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~ 105 (433)
+..|||+|||||++|+++|..|++.|.+|++||++ .+||.|... +.|.-.+........ ....++.... ..-.+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 46799999999999999999999999999999996 688887642 222211100000000 0000100000 00123
Q ss_pred HHHHHHHHHHHHH------------Hc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCC
Q 013943 106 KQQFVDYLEAYAK------------RF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGEN 172 (433)
Q Consensus 106 ~~~~~~~l~~~~~------------~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~ 172 (433)
...+..+..+... .. ++++..+ +++.++. ..|+|++.++ +..+++||+||+|||
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~----~~~~V~~~~g------~~~~~~~d~lViATG-- 149 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE----RTLTVTLNDG------GEQTVHFDRAFIGTG-- 149 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC----CEEEEEecCC------CeEEEECCEEEEeCC--
Confidence 3444433333222 11 3443333 4555532 4577877653 125799999999999
Q ss_pred CCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchh
Q 013943 173 AEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFG 252 (433)
Q Consensus 173 ~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~ 252 (433)
++|..|++||.+... .+++... ......+++++|||+|.+|+|+|..|.+.|.+|+++.+. .++|..+.
T Consensus 150 s~p~~p~i~G~~~~~--~~~~~~~-~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~~------ 218 (468)
T PRK14694 150 ARPAEPPVPGLAETP--YLTSTSA-LELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQEDP------ 218 (468)
T ss_pred CCCCCCCCCCCCCCc--eEcchhh-hchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCCH------
Confidence 889999999875421 2222211 112234789999999999999999999999999999764 34443211
Q ss_pred hhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC
Q 013943 253 LSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR 330 (433)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~ 330 (433)
. ....+.+.+++.+|+++.+ +.++..
T Consensus 219 -----------~-----------------------------------------~~~~l~~~l~~~GI~v~~~~~v~~i~~ 246 (468)
T PRK14694 219 -----------A-----------------------------------------VGEAIEAAFRREGIEVLKQTQASEVDY 246 (468)
T ss_pred -----------H-----------------------------------------HHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence 0 1111124455567888776 666653
Q ss_pred C--eEEE-cCCcEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhh
Q 013943 331 Y--AVEF-VNGRCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMD 403 (433)
Q Consensus 331 ~--~v~~-~~g~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~ 403 (433)
+ .+.+ .++.++++|.||+|+|..|+...+ +.+.++.. ++|++.+| ++++|+.|+|||+|||+.. +..|..+
T Consensus 247 ~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~~~~~A~~~ 324 (468)
T PRK14694 247 NGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRID-EHLQTTVSGIYAAGDCTDQPQFVYVAAAG 324 (468)
T ss_pred cCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeC-CCcccCCCCEEEEeecCCCcccHHHHHHH
Confidence 2 2222 234569999999999999998422 23456665 67889888 6788999999999999864 4478899
Q ss_pred HHHHHHHHHhh
Q 013943 404 AKRIAQDIESC 414 (433)
Q Consensus 404 g~~~a~~i~~~ 414 (433)
|+.+|.+|.+.
T Consensus 325 G~~aa~~i~~~ 335 (468)
T PRK14694 325 GSRAAINMTGG 335 (468)
T ss_pred HHHHHHHhcCC
Confidence 99999999753
No 46
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.97 E-value=5.1e-30 Score=254.24 Aligned_cols=278 Identities=21% Similarity=0.217 Sum_probs=194.7
Q ss_pred ccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHH
Q 013943 30 CICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQF 109 (433)
Q Consensus 30 ~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
+...++|+|||||++|+++|..|++.|++|+++|+.+.+||.+... + +.+....++
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------i---------p~~~~~~~~ 192 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------I---------PEFRLPKDI 192 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------C---------CCccCCHHH
Confidence 3456899999999999999999999999999999999888765331 1 111123466
Q ss_pred HHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCc
Q 013943 110 VDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGD 189 (433)
Q Consensus 110 ~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~ 189 (433)
.++..+++.+.+++++.++.+. .. +...+ ..+.||+||+|||. ..+..++++|.+. .+
T Consensus 193 ~~~~~~~l~~~gv~~~~~~~v~--------~~--v~~~~---------~~~~~d~vvlAtGa-~~~~~~~i~G~~~-~g- 250 (457)
T PRK11749 193 VDREVERLLKLGVEIRTNTEVG--------RD--ITLDE---------LRAGYDAVFIGTGA-GLPRFLGIPGENL-GG- 250 (457)
T ss_pred HHHHHHHHHHcCCEEEeCCEEC--------Cc--cCHHH---------HHhhCCEEEEccCC-CCCCCCCCCCccC-CC-
Confidence 7777777888898888887651 11 22222 23679999999995 2466667777643 12
Q ss_pred eeeccCCC--------CCCCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecccccCCcchhhhHHHHhh
Q 013943 190 IRHTSLYK--------SGEDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKW 260 (433)
Q Consensus 190 ~~~~~~~~--------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~ 260 (433)
+.+...+. ......+++|+|||+|.+|+|+|..+.+.|. +|+++.|++...+|....
T Consensus 251 v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-------------- 316 (457)
T PRK11749 251 VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE-------------- 316 (457)
T ss_pred cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH--------------
Confidence 22211110 0112368899999999999999999999987 899999876333332100
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCe-----E
Q 013943 261 LPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYA-----V 333 (433)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~-----v 333 (433)
..+.+++.+|+++.+ +.++..++ +
T Consensus 317 -------------------------------------------------~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v 347 (457)
T PRK11749 317 -------------------------------------------------EVEHAKEEGVEFEWLAAPVEILGDEGRVTGV 347 (457)
T ss_pred -------------------------------------------------HHHHHHHCCCEEEecCCcEEEEecCCceEEE
Confidence 012233456666654 44443221 4
Q ss_pred EEc-------------------CCcEecccEEEEccCCCCCCCCccc-cccccccCCCCcCCCCCCCCCCCCceEEeeec
Q 013943 334 EFV-------------------NGRCENFDAIILATGYRSNVPSWLK-ESEMFSRKDGLPRRPFPNGWKGESGLYSVGFT 393 (433)
Q Consensus 334 ~~~-------------------~g~~~~~D~vi~atG~~~~~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~ 393 (433)
.+. +++++++|.||+|+|+.|+. .++. ..++..+++|++.+|..+++|+.|+|||+||+
T Consensus 348 ~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~-~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~ 426 (457)
T PRK11749 348 EFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP-LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDI 426 (457)
T ss_pred EEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc-hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCc
Confidence 331 23469999999999999996 5554 34666677899999844788999999999999
Q ss_pred ccc---cccchhhHHHHHHHHHhhhcc
Q 013943 394 KRG---LLGVAMDAKRIAQDIESCWKA 417 (433)
Q Consensus 394 ~~~---~~~a~~~g~~~a~~i~~~l~~ 417 (433)
+.. +..|+.+|+.+|.+|...|.+
T Consensus 427 ~~~~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 427 VTGAATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 854 447999999999999998875
No 47
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=9.1e-30 Score=267.88 Aligned_cols=278 Identities=21% Similarity=0.221 Sum_probs=192.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.-++|+|||+|||||+||..|++.|++|+|||+.+.+||.+.+. + |.+....++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG---------------I---------P~~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG---------------I---------PEFRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc---------------C---------CCCcChHHHHH
Confidence 46899999999999999999999999999999999999976541 1 22333466777
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCcee
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIR 191 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~ 191 (433)
...+.++..|+++++++.+. . .+++++. ....||+||+|||+ ..|+.+++||.+. .| +.
T Consensus 361 ~~i~~l~~~Gv~f~~n~~vG--------~--dit~~~l--------~~~~yDAV~LAtGA-~~pr~l~IpG~dl-~G-V~ 419 (944)
T PRK12779 361 DVVEKIKLLGGRFVKNFVVG--------K--TATLEDL--------KAAGFWKIFVGTGA-GLPTFMNVPGEHL-LG-VM 419 (944)
T ss_pred HHHHHHHhhcCeEEEeEEec--------c--EEeHHHh--------ccccCCEEEEeCCC-CCCCcCCCCCCcC-cC-cE
Confidence 77778888899988886551 1 1444442 44579999999995 3678788888653 22 11
Q ss_pred eccCCC---------------CCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHH
Q 013943 192 HTSLYK---------------SGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMW 256 (433)
Q Consensus 192 ~~~~~~---------------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~ 256 (433)
...++. ......+++|+|||||++|+|+|..+.+.|++|++++|++...+|....
T Consensus 420 ~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~---------- 489 (944)
T PRK12779 420 SANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVE---------- 489 (944)
T ss_pred EHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHH----------
Confidence 111110 0112368999999999999999999999999999999886323331100
Q ss_pred HHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe-----
Q 013943 257 LLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK----- 329 (433)
Q Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~----- 329 (433)
.+ . . ..+.+|+++.. +.++.
T Consensus 490 -----------e~----~-------------------------------------~-a~eeGV~~~~~~~p~~i~~d~~~ 516 (944)
T PRK12779 490 -----------EL----H-------------------------------------H-ALEEGINLAVLRAPREFIGDDHT 516 (944)
T ss_pred -----------HH----H-------------------------------------H-HHHCCCEEEeCcceEEEEecCCC
Confidence 00 0 0 00112222221 11111
Q ss_pred -----------------CCe--EEEcCC--cEecccEEEEccCCCCCCCCcccc-ccccccCCCCcCCCCCCCCCCCCce
Q 013943 330 -----------------RYA--VEFVNG--RCENFDAIILATGYRSNVPSWLKE-SEMFSRKDGLPRRPFPNGWKGESGL 387 (433)
Q Consensus 330 -----------------~~~--v~~~~g--~~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~i 387 (433)
.++ ....+| .++++|.||+|+|+.|+. .+... .++..+++|.+.+|...++|+.|+|
T Consensus 517 ~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~-~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgV 595 (944)
T PRK12779 517 HFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANP-IMKDAEPGLKTNKWGTIEVEKGSQRTSIKGV 595 (944)
T ss_pred CEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCCh-hhhhcccCceECCCCCEEECCCCCccCCCCE
Confidence 111 011123 359999999999999996 33332 3666667899988855688999999
Q ss_pred EEeeecccc---cccchhhHHHHHHHHHhhhccC
Q 013943 388 YSVGFTKRG---LLGVAMDAKRIAQDIESCWKAK 418 (433)
Q Consensus 388 ya~Gd~~~~---~~~a~~~g~~~a~~i~~~l~~~ 418 (433)
||+||++.+ +..|+.+|+.+|.+|.++|.-.
T Consensus 596 FAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 596 YSGGDAARGGSTAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred EEEEcCCCChHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999975 4589999999999999988753
No 48
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=1.8e-29 Score=261.42 Aligned_cols=290 Identities=22% Similarity=0.275 Sum_probs=186.8
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
..-++|+||||||||+++|..|+++|++|+|+|+.+.+||.+... + +.+....++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------I---------P~~Rlp~evL 592 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------I---------PQFRIPAELI 592 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------c---------ccccccHHHH
Confidence 356899999999999999999999999999999999999876431 1 1111224455
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
+...+++...++++++++.+ .++. .+. ....||+||||||+. .+..++++|.+. + +
T Consensus 593 ~~die~l~~~GVe~~~gt~V-di~l-----------e~L--------~~~gYDaVILATGA~-~~~~l~IpG~~~--g-V 648 (1019)
T PRK09853 593 QHDIEFVKAHGVKFEFGCSP-DLTV-----------EQL--------KNEGYDYVVVAIGAD-KNGGLKLEGGNQ--N-V 648 (1019)
T ss_pred HHHHHHHHHcCCEEEeCcee-EEEh-----------hhh--------eeccCCEEEECcCCC-CCCCCCCCCccC--C-c
Confidence 55566777789999888766 2221 111 345689999999952 344455676542 1 2
Q ss_pred eeccCCC------CCCCCCCCeEEEECCCCcHHHHHHHHhcc-C-CCcEEEEecCcceecccccCCcchhhhHHHHhhcc
Q 013943 191 RHTSLYK------SGEDFRGKRVLVVGCGNSGMEVCLDLCNH-D-AMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLP 262 (433)
Q Consensus 191 ~~~~~~~------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~-g-~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~ 262 (433)
.....+. ......+++|+|||+|++|+|+|..+.+. | .+|++++|++...+|....
T Consensus 649 ~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~e---------------- 712 (1019)
T PRK09853 649 IKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWRE---------------- 712 (1019)
T ss_pred eehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHH----------------
Confidence 2221111 11223589999999999999999999887 4 4899999987444442110
Q ss_pred hHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC-ceEEeCCe----EEEcC
Q 013943 263 MRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG-IKRLKRYA----VEFVN 337 (433)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~~----v~~~~ 337 (433)
.+ +.. . ..++. +.... .+ .+...++++.+..- +...+..+ +...+
T Consensus 713 -El-e~A-------l-----eeGVe--------~~~~~--~p------~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~ 762 (1019)
T PRK09853 713 -EY-EEA-------L-----EDGVE--------FKELL--NP------ESFDADGTLTCRVMKLGEPDESGRRRPVETGE 762 (1019)
T ss_pred -HH-HHH-------H-----HcCCE--------EEeCC--ce------EEEEcCCcEEEEEEEeecccCCCceEEeeCCC
Confidence 00 000 0 00110 00000 00 00000122221100 00111111 22234
Q ss_pred CcEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhHHHHHHHHHhh
Q 013943 338 GRCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 338 g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g~~~a~~i~~~ 414 (433)
+.++++|.||+|+|..|+. .++.+.++..+++|++.+| +.++++.|+|||+||++.+ +..|+.+|+.+|.+|.+.
T Consensus 763 ~~~I~aD~VIvAIG~~Pnt-elle~~GL~ld~~G~I~VD-etlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~ 840 (1019)
T PRK09853 763 TVTLEADTVITAIGEQVDT-ELLKANGIPLDKKGWPVVD-ANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSR 840 (1019)
T ss_pred eEEEEeCEEEECCCCcCCh-hHHHhcCccccCCCCEEeC-CCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhh
Confidence 5679999999999999998 6777777766678999887 6778899999999999854 457999999999999987
Q ss_pred hc
Q 013943 415 WK 416 (433)
Q Consensus 415 l~ 416 (433)
..
T Consensus 841 ~~ 842 (1019)
T PRK09853 841 EG 842 (1019)
T ss_pred cC
Confidence 65
No 49
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=3.9e-30 Score=268.75 Aligned_cols=280 Identities=18% Similarity=0.194 Sum_probs=199.1
Q ss_pred eEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 36 PVIVGAGPSGLATAACLKER---GIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 36 VvIIGaG~aGl~~A~~L~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
|||||+|+||+.+|..|++. +++|+|||+++.++ |....+ +. .+.+....+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--~~------------~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--SS------------VLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--cH------------HHCCCCCHHHccCC
Confidence 69999999999999999885 46999999998552 111110 00 01111233344333
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCceee
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRH 192 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~~ 192 (433)
..+++++.+++++.+++|+.++... . +|.+.++ ..+.||+||+||| +.|+.|++||.+.. + ++.
T Consensus 60 ~~~~~~~~gv~~~~g~~V~~Id~~~--k--~V~~~~g--------~~~~yD~LVlATG--s~p~~p~ipG~~~~-~-v~~ 123 (785)
T TIGR02374 60 SKDWYEKHGITLYTGETVIQIDTDQ--K--QVITDAG--------RTLSYDKLILATG--SYPFILPIPGADKK-G-VYV 123 (785)
T ss_pred CHHHHHHCCCEEEcCCeEEEEECCC--C--EEEECCC--------cEeeCCEEEECCC--CCcCCCCCCCCCCC-C-EEE
Confidence 4455677899999999999998765 2 3677765 6899999999999 88999999987542 1 221
Q ss_pred ccCCCC-----CCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHH
Q 013943 193 TSLYKS-----GEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVD 267 (433)
Q Consensus 193 ~~~~~~-----~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (433)
.....+ .....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ +++++.. .+..
T Consensus 124 ~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~l----------------d~~~-- 184 (785)
T TIGR02374 124 FRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQL----------------DQTA-- 184 (785)
T ss_pred eCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhc----------------CHHH--
Confidence 111111 011246899999999999999999999999999998887 4443211 1110
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC----eEEEcCCcEe
Q 013943 268 KLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY----AVEFVNGRCE 341 (433)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~~ 341 (433)
...+.+.+++.+|+++.+ +.++..+ ++.+.+|+++
T Consensus 185 ---------------------------------------~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i 225 (785)
T TIGR02374 185 ---------------------------------------GRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSL 225 (785)
T ss_pred ---------------------------------------HHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEE
Confidence 011123455668888876 6666543 4778899999
Q ss_pred cccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc-------cccchhhHHHHHHHHHhh
Q 013943 342 NFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-------LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 342 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-------~~~a~~~g~~~a~~i~~~ 414 (433)
++|.||+|+|+.|+. .+.++.++.. + |.+++| ++++|+.|+|||+|||+.. +..|..+|+.+|.+|.+.
T Consensus 226 ~~D~Vi~a~G~~Pn~-~la~~~gl~~-~-ggI~Vd-~~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~ 301 (785)
T TIGR02374 226 EADLIVMAAGIRPND-ELAVSAGIKV-N-RGIIVN-DSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGV 301 (785)
T ss_pred EcCEEEECCCCCcCc-HHHHhcCCcc-C-CCEEEC-CCcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCC
Confidence 999999999999998 5777778765 3 557777 6788999999999999852 224678999999999864
No 50
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2.8e-29 Score=250.10 Aligned_cols=308 Identities=20% Similarity=0.202 Sum_probs=196.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc-cccCceeeecCCcee---------ecCCCCCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL-KTYDRLRLHLPKQFC---------ELPLMGFPSEFP 101 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 101 (433)
..|||+||||||+|+++|..|++.|.+|+|+|+. .+||.+.. .+.|.-.+......+ .+.....+.++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 5799999999999999999999999999999996 68887644 233332211110000 000000000111
Q ss_pred CCC-CHHHHHHHH----HHHHHHcCCcceecceEEEEEEe---CCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 102 TYP-SKQQFVDYL----EAYAKRFEIRPRFNETVSQAEYD---ATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 102 ~~~-~~~~~~~~l----~~~~~~~~l~~~~~~~v~~v~~~---~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
... ..+++.+.+ .+++++.++++..+ +++.++.. ...+.++|.+.++ +...+.||+||+||| +
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g------~~~~~~~d~lViATG--s 152 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETG------ENEMIIPENLLIATG--S 152 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCC------ceEEEEcCEEEEeCC--C
Confidence 111 122222222 34455667777665 45555433 1113566766543 125799999999999 6
Q ss_pred CCccCCccCCCCCCCc-eeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchh
Q 013943 174 EAVVPEIEGSDEFGGD-IRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFG 252 (433)
Q Consensus 174 ~p~~p~~~g~~~~~~~-~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~ 252 (433)
+|..++ +... .+. ..+..+.. .....+++++|||+|++|+|+|..|++.|.+|+++.+.+ +++|..+. .
T Consensus 153 ~p~~~p--~~~~-~~~~~~~~~~~~-~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~~~~-----~ 222 (472)
T PRK05976 153 RPVELP--GLPF-DGEYVISSDEAL-SLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPTEDA-----E 222 (472)
T ss_pred CCCCCC--CCCC-CCceEEcchHhh-CccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCcCCH-----H
Confidence 675432 2221 122 22222222 223346899999999999999999999999999999988 56554321 0
Q ss_pred hhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe-
Q 013943 253 LSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK- 329 (433)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~- 329 (433)
....+.+.+++.+|+++.+ +.++.
T Consensus 223 -----------------------------------------------------~~~~l~~~l~~~gI~i~~~~~v~~i~~ 249 (472)
T PRK05976 223 -----------------------------------------------------LSKEVARLLKKLGVRVVTGAKVLGLTL 249 (472)
T ss_pred -----------------------------------------------------HHHHHHHHHHhcCCEEEeCcEEEEEEE
Confidence 0111123455668888876 66665
Q ss_pred --CCeE---EEcCCc--EecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cc
Q 013943 330 --RYAV---EFVNGR--CENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LL 398 (433)
Q Consensus 330 --~~~v---~~~~g~--~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~ 398 (433)
.+++ .+.+|+ ++++|.||+|+|..|+...+ +...++.. ++|.+.+| +.++++.|+|||+|||+.. ..
T Consensus 250 ~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd-~~l~ts~~~IyAiGD~~~~~~~~~ 327 (472)
T PRK05976 250 KKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQID-DFCQTKERHIYAIGDVIGEPQLAH 327 (472)
T ss_pred ecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEEC-CCcccCCCCEEEeeecCCCcccHH
Confidence 3333 234563 68999999999999998433 23335544 56888888 6778899999999999854 44
Q ss_pred cchhhHHHHHHHHHhh
Q 013943 399 GVAMDAKRIAQDIESC 414 (433)
Q Consensus 399 ~a~~~g~~~a~~i~~~ 414 (433)
.|..+|..+|++|.+.
T Consensus 328 ~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 328 VAMAEGEMAAEHIAGK 343 (472)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7899999999998753
No 51
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-29 Score=211.11 Aligned_cols=285 Identities=19% Similarity=0.209 Sum_probs=214.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC----CCCCcccccccCceeeecCCceeecCCCCCCCCCCCCC---C
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSN----CIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYP---S 105 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~----~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 105 (433)
+.+|+|||.||++.++|+.+++..++.+++|--- .+||+... ...-+++|+|| .
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT-------------------TT~veNfPGFPdgi~ 68 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT-------------------TTDVENFPGFPDGIT 68 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee-------------------eeccccCCCCCcccc
Confidence 4689999999999999999999999999998632 22332111 11112445554 6
Q ss_pred HHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCC--
Q 013943 106 KQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGS-- 183 (433)
Q Consensus 106 ~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~-- 183 (433)
..++.+.+++...++|.++... .|.+++... +.|.+.++. +.+.+|.||+|||+ ..+...+||.
T Consensus 69 G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF~l~td~---------~~v~~~avI~atGA--sAkRl~~pg~ge 134 (322)
T KOG0404|consen 69 GPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPFKLWTDA---------RPVTADAVILATGA--SAKRLHLPGEGE 134 (322)
T ss_pred cHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCeEEEecC---------CceeeeeEEEeccc--ceeeeecCCCCc
Confidence 7999999999999999886655 688888876 788888765 68999999999995 4444455655
Q ss_pred CCCCCceeeccCCCCCCC--CCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhc
Q 013943 184 DEFGGDIRHTSLYKSGED--FRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWL 261 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~--~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l 261 (433)
..|..+.+..|..++... +++|..+|||||.+|+|-|..|.+.+++|.+++|+++.... ..|
T Consensus 135 ~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs------------~~M---- 198 (322)
T KOG0404|consen 135 GEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS------------KIM---- 198 (322)
T ss_pred chHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH------------HHH----
Confidence 337777889999988765 89999999999999999999999999999999999842211 111
Q ss_pred chHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC-----eEE
Q 013943 262 PMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY-----AVE 334 (433)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~-----~v~ 334 (433)
. .+.+.+.+|+++.+ +.+.-++ ++.
T Consensus 199 ---------q---------------------------------------~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ 230 (322)
T KOG0404|consen 199 ---------Q---------------------------------------QRAEKNPNIEVLYNTVAVEALGDGKLLNGLR 230 (322)
T ss_pred ---------H---------------------------------------HHHhcCCCeEEEechhhhhhccCcccccceE
Confidence 0 13344567777766 2222222 122
Q ss_pred E-----cCCcEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeeccc----ccccchhhHH
Q 013943 335 F-----VNGRCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKR----GLLGVAMDAK 405 (433)
Q Consensus 335 ~-----~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~----~~~~a~~~g~ 405 (433)
. .+...++++-+++++|..|++ .+++. .++.|.+|++++.+....|++||+||+||+++ ++..|...|.
T Consensus 231 ikn~~tge~~dl~v~GlFf~IGH~Pat-~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGc 308 (322)
T KOG0404|consen 231 IKNVKTGEETDLPVSGLFFAIGHSPAT-KFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGC 308 (322)
T ss_pred EEecccCcccccccceeEEEecCCchh-hHhcC-ceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccch
Confidence 2 234459999999999999999 67776 45557899999886678899999999999995 4667788888
Q ss_pred HHHHHHHhhhc
Q 013943 406 RIAQDIESCWK 416 (433)
Q Consensus 406 ~~a~~i~~~l~ 416 (433)
.+|-...++|.
T Consensus 309 iaaldAe~yL~ 319 (322)
T KOG0404|consen 309 IAALDAERYLT 319 (322)
T ss_pred hhhhhHHHHhh
Confidence 88888877765
No 52
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=2.9e-29 Score=249.18 Aligned_cols=304 Identities=16% Similarity=0.151 Sum_probs=191.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--------CCCCccc-ccccCceeeecCCceee----cCCCCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSN--------CIASLWQ-LKTYDRLRLHLPKQFCE----LPLMGFPSE 99 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~--------~~gg~w~-~~~~~~~~~~~~~~~~~----~~~~~~~~~ 99 (433)
.|||+|||+|++|+.+|..+++.|.+|+++|+.. .+||.+- ..++|.-.+........ ...+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 3899999999999999999999999999999731 4777543 34555432221111100 000000000
Q ss_pred CCCCCCHHHHHH-----------HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEc
Q 013943 100 FPTYPSKQQFVD-----------YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVA 168 (433)
Q Consensus 100 ~~~~~~~~~~~~-----------~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiA 168 (433)
.........+.+ .....++..++++..+. ..-+ +. ..+.|...++ +...++||+||+|
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~-a~f~---~~-~~v~v~~~~g------~~~~~~~d~lVIA 150 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAY-AEFV---DK-HRIKATNKKG------KEKIYSAERFLIA 150 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc---CC-CEEEEeccCC------CceEEEeCEEEEe
Confidence 000012222222 22223444555554332 2111 11 3444433222 1357999999999
Q ss_pred cCCCCCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCC
Q 013943 169 TGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGK 248 (433)
Q Consensus 169 tG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~ 248 (433)
|| ++|..|++||...+ ...+..... ....+++++|||+|.+|+|+|..|++.|.+|+++.|. .++|..+.
T Consensus 151 TG--s~p~~p~ipG~~~~---~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d~-- 220 (484)
T TIGR01438 151 TG--ERPRYPGIPGAKEL---CITSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILLRGFDQ-- 220 (484)
T ss_pred cC--CCCCCCCCCCccce---eecHHHhhc-ccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--ccccccCH--
Confidence 99 88999999886432 122211211 2234678999999999999999999999999999873 44443322
Q ss_pred cchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ce
Q 013943 249 STFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IK 326 (433)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~ 326 (433)
. ....+.+.+++.+|+++.+ +.
T Consensus 221 ---~-----------------------------------------------------~~~~l~~~L~~~gV~i~~~~~v~ 244 (484)
T TIGR01438 221 ---D-----------------------------------------------------CANKVGEHMEEHGVKFKRQFVPI 244 (484)
T ss_pred ---H-----------------------------------------------------HHHHHHHHHHHcCCEEEeCceEE
Confidence 0 1111123455667888776 44
Q ss_pred EEeC--Ce--EEEcCC---cEecccEEEEccCCCCCCCCc-cccccccccC-CCCcCCCCCCCCCCCCceEEeeecccc-
Q 013943 327 RLKR--YA--VEFVNG---RCENFDAIILATGYRSNVPSW-LKESEMFSRK-DGLPRRPFPNGWKGESGLYSVGFTKRG- 396 (433)
Q Consensus 327 ~~~~--~~--v~~~~g---~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~-~g~~~~~~~~~~~~~~~iya~Gd~~~~- 396 (433)
++.. +. +.+.++ +++++|.||+|+|+.||+..+ +...++..++ +|.+.+| ++++|+.|+|||+|||+..
T Consensus 245 ~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd-~~~~Ts~p~IyA~GDv~~~~ 323 (484)
T TIGR01438 245 KVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPAD-EEEQTNVPYIYAVGDILEDK 323 (484)
T ss_pred EEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecC-CCcccCCCCEEEEEEecCCC
Confidence 5542 22 445555 379999999999999998433 3455776644 5888898 6788999999999999852
Q ss_pred ---cccchhhHHHHHHHHHhh
Q 013943 397 ---LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 397 ---~~~a~~~g~~~a~~i~~~ 414 (433)
...|..+|+.+|++|...
T Consensus 324 ~~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 324 QELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred ccchHHHHHHHHHHHHHHhcC
Confidence 447899999999999853
No 53
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.96 E-value=4e-29 Score=247.87 Aligned_cols=299 Identities=16% Similarity=0.174 Sum_probs=188.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-cccccccCceeeecCCceee----cC--CCCCCCCCCCCCCHH
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS-LWQLKTYDRLRLHLPKQFCE----LP--LMGFPSEFPTYPSKQ 107 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~ 107 (433)
+|+|||+||+|+++|..+++.|.+|+++|++. +|| +....+.|.-.+........ .. ....... .......
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~-~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNG-SISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCC-CCccCHH
Confidence 79999999999999999999999999999985 555 44444444322211100000 00 0000000 0011223
Q ss_pred HHHHHHHH-----------HHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 108 QFVDYLEA-----------YAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 108 ~~~~~l~~-----------~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
.+..+..+ .++..++++..+ ++..++ . ..+.|+.+++ ..+++||+||+||| ++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~--~--~~v~v~~~~~-------~~~~~~d~lviATG--s~p~ 145 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFET--D--HRVRVEYGDK-------EEVVDAEQFIIAAG--SEPT 145 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcc--C--CEEEEeeCCC-------cEEEECCEEEEeCC--CCCC
Confidence 33322222 233334444333 222222 2 4555654432 25799999999999 7787
Q ss_pred cCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHH
Q 013943 177 VPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMW 256 (433)
Q Consensus 177 ~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~ 256 (433)
.|++++... ..+.++ .........+++++|||+|++|+|+|..+.+.|.+|+++.+.+ +++|..+. .
T Consensus 146 ~~p~~~~~~--~~v~~~-~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~-----e---- 212 (458)
T PRK06912 146 ELPFAPFDG--KWIINS-KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDE-----D---- 212 (458)
T ss_pred CCCCCCCCC--CeEEcc-hHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccH-----H----
Confidence 776665432 122222 2222233346899999999999999999999999999999887 55553221 0
Q ss_pred HHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC--e
Q 013943 257 LLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY--A 332 (433)
Q Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~--~ 332 (433)
....+.+.+++.+|+++.+ +.+++.+ .
T Consensus 213 -------------------------------------------------~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~ 243 (458)
T PRK06912 213 -------------------------------------------------IAHILREKLENDGVKIFTGAALKGLNSYKKQ 243 (458)
T ss_pred -------------------------------------------------HHHHHHHHHHHCCCEEEECCEEEEEEEcCCE
Confidence 0011123455567888876 6676543 2
Q ss_pred EEEc-CC--cEecccEEEEccCCCCCCCCc-cccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhHH
Q 013943 333 VEFV-NG--RCENFDAIILATGYRSNVPSW-LKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDAK 405 (433)
Q Consensus 333 v~~~-~g--~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g~ 405 (433)
+.+. ++ +++++|.||+|+|..|+...+ +...++..+++| +.+| ++++|+.|+|||+||++.. +..|..+|+
T Consensus 244 v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd-~~~~ts~~~VyA~GD~~~~~~la~~A~~~g~ 321 (458)
T PRK06912 244 ALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVN-EHMQTNVPHIYACGDVIGGIQLAHVAFHEGT 321 (458)
T ss_pred EEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeC-CCeecCCCCEEEEeecCCCcccHHHHHHHHH
Confidence 4443 34 368999999999999998433 344466655666 7788 6788999999999999964 447899999
Q ss_pred HHHHHHHh
Q 013943 406 RIAQDIES 413 (433)
Q Consensus 406 ~~a~~i~~ 413 (433)
.+|.++.+
T Consensus 322 ~aa~~~~g 329 (458)
T PRK06912 322 TAALHASG 329 (458)
T ss_pred HHHHHHcC
Confidence 99999875
No 54
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.96 E-value=1.9e-29 Score=243.78 Aligned_cols=283 Identities=20% Similarity=0.240 Sum_probs=197.7
Q ss_pred CeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 35 GPVIVGAGPSGLATAACLKER---GIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
+|||||||+||+.+|.+|+++ +.+|+|||+++.+- |... + +....+....+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~----------~-----~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM----------L-----PGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch----------h-----hHHHheeCCHHHhcc
Confidence 489999999999999999754 57999999987421 1100 0 000011223455555
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCcee
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIR 191 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~ 191 (433)
.+.+++++.+++++.+ +|++++.+.. . |.+.++ +.+.||+||+||| +.+..|.+||...... .+
T Consensus 59 ~~~~~~~~~gv~~~~~-~v~~id~~~~--~--V~~~~g--------~~~~yD~LviAtG--~~~~~~~i~g~~~~~~-~~ 122 (364)
T TIGR03169 59 DLRRLARQAGARFVIA-EATGIDPDRR--K--VLLANR--------PPLSYDVLSLDVG--STTPLSGVEGAADLAV-PV 122 (364)
T ss_pred cHHHHHHhcCCEEEEE-EEEEEecccC--E--EEECCC--------CcccccEEEEccC--CCCCCCCCCccccccc-cc
Confidence 6667777888887664 8999988763 3 667765 5799999999999 8888888888533110 00
Q ss_pred ec----cC----CCCCC--CCCCCeEEEECCCCcHHHHHHHHhcc----C--CCcEEEEecCcceecccccCCcchhhhH
Q 013943 192 HT----SL----YKSGE--DFRGKRVLVVGCGNSGMEVCLDLCNH----D--AMPSLVVRDTVHVLPQEMLGKSTFGLSM 255 (433)
Q Consensus 192 ~~----~~----~~~~~--~~~~~~v~VvG~G~~a~e~a~~l~~~----g--~~Vtl~~r~~~~~lp~~~~~~~~~~~~~ 255 (433)
.. .. ..... ...+++++|||+|.+|+|+|..|.+. + .+|+++ +.+ .+++...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~---------- 190 (364)
T TIGR03169 123 KPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFP---------- 190 (364)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCC----------
Confidence 00 00 10000 12357999999999999999999853 3 478888 443 3333211
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCeE
Q 013943 256 WLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYAV 333 (433)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~v 333 (433)
+. ......+.+++.+|+++.+ +.+++++.+
T Consensus 191 -------~~-----------------------------------------~~~~~~~~l~~~gV~v~~~~~v~~i~~~~v 222 (364)
T TIGR03169 191 -------AK-----------------------------------------VRRLVLRLLARRGIEVHEGAPVTRGPDGAL 222 (364)
T ss_pred -------HH-----------------------------------------HHHHHHHHHHHCCCEEEeCCeeEEEcCCeE
Confidence 00 1111224466678998886 788887789
Q ss_pred EEcCCcEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCC-CCCceEEeeecccc--------cccchhhH
Q 013943 334 EFVNGRCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWK-GESGLYSVGFTKRG--------LLGVAMDA 404 (433)
Q Consensus 334 ~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~-~~~~iya~Gd~~~~--------~~~a~~~g 404 (433)
.+.+|+++++|.||+|+|..|+. ++...++..+++|++.+| +.+++ +.|+|||+|||+.. ...|..+|
T Consensus 223 ~~~~g~~i~~D~vi~a~G~~p~~--~l~~~gl~~~~~g~i~vd-~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g 299 (364)
T TIGR03169 223 ILADGRTLPADAILWATGARAPP--WLAESGLPLDEDGFLRVD-PTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQA 299 (364)
T ss_pred EeCCCCEEecCEEEEccCCChhh--HHHHcCCCcCCCCeEEEC-CccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhH
Confidence 99999999999999999999984 555566666678999999 45555 89999999999842 23589999
Q ss_pred HHHHHHHHhhhccC
Q 013943 405 KRIAQDIESCWKAK 418 (433)
Q Consensus 405 ~~~a~~i~~~l~~~ 418 (433)
+.+|++|...+...
T Consensus 300 ~~~a~ni~~~l~g~ 313 (364)
T TIGR03169 300 PILAANLRASLRGQ 313 (364)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999888754
No 55
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=3.7e-29 Score=261.62 Aligned_cols=277 Identities=19% Similarity=0.222 Sum_probs=188.9
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
..-++|+||||||||+++|..|+++|++|+|||+.+.+||.+.. .++.+. ...++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~---------------gip~~r---------lp~~~~ 484 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY---------------GIPEFR---------LPKKIV 484 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee---------------cCCCCC---------CCHHHH
Confidence 45689999999999999999999999999999999888887543 122211 123455
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
+...+.+.+.++++++++.+ + .. ++.++. ....||+||+|||+ ..|+.+++||.+.. + +
T Consensus 485 ~~~~~~l~~~gv~~~~~~~v------~--~~--v~~~~l--------~~~~ydavvlAtGa-~~~~~l~ipG~~~~-g-V 543 (752)
T PRK12778 485 DVEIENLKKLGVKFETDVIV------G--KT--ITIEEL--------EEEGFKGIFIASGA-GLPNFMNIPGENSN-G-V 543 (752)
T ss_pred HHHHHHHHHCCCEEECCCEE------C--Cc--CCHHHH--------hhcCCCEEEEeCCC-CCCCCCCCCCCCCC-C-c
Confidence 55566677789998888654 1 11 233321 35669999999995 25777888886531 1 1
Q ss_pred eeccCC----------C---CCCCCCCCeEEEECCCCcHHHHHHHHhccCCC-cEEEEecCcceecccccCCcchhhhHH
Q 013943 191 RHTSLY----------K---SGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAM-PSLVVRDTVHVLPQEMLGKSTFGLSMW 256 (433)
Q Consensus 191 ~~~~~~----------~---~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-Vtl~~r~~~~~lp~~~~~~~~~~~~~~ 256 (433)
++..++ . ......+++|+|||+|++|+|+|..+.+.|.+ |++++|++...+|....
T Consensus 544 ~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~---------- 613 (752)
T PRK12778 544 MSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLE---------- 613 (752)
T ss_pred EEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH----------
Confidence 111111 0 11234679999999999999999999999987 99999887323332100
Q ss_pred HHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC--C-
Q 013943 257 LLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR--Y- 331 (433)
Q Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~--~- 331 (433)
. .+.+++.+|+++.. +.++.. +
T Consensus 614 -----------e------------------------------------------~~~~~~~GV~i~~~~~~~~i~~~~~g 640 (752)
T PRK12778 614 -----------E------------------------------------------VKHAKEEGIEFLTLHNPIEYLADEKG 640 (752)
T ss_pred -----------H------------------------------------------HHHHHHcCCEEEecCcceEEEECCCC
Confidence 0 01112223333322 222210 0
Q ss_pred ---eEEE-------------------c-CCcEecccEEEEccCCCCCCCCccccc-cccccCCCCcCCCCCCCCCCCCce
Q 013943 332 ---AVEF-------------------V-NGRCENFDAIILATGYRSNVPSWLKES-EMFSRKDGLPRRPFPNGWKGESGL 387 (433)
Q Consensus 332 ---~v~~-------------------~-~g~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~i 387 (433)
++.+ + +..++++|.||+|+|+.|+. .++... ++..+++|.+.+| +.++|+.|+|
T Consensus 641 ~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~gV 718 (752)
T PRK12778 641 WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP-LVPSSIPGLELNRKGTIVVD-EEMQSSIPGI 718 (752)
T ss_pred EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc-cccccccCceECCCCCEEeC-CCCCCCCCCE
Confidence 0111 1 12358999999999999997 455554 6666678999888 5568999999
Q ss_pred EEeeecccc---cccchhhHHHHHHHHHhhhcc
Q 013943 388 YSVGFTKRG---LLGVAMDAKRIAQDIESCWKA 417 (433)
Q Consensus 388 ya~Gd~~~~---~~~a~~~g~~~a~~i~~~l~~ 417 (433)
||+||++.+ +..|+.+|+.+|.+|.+.|..
T Consensus 719 fA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 719 YAGGDIVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred EEeCCccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999864 457999999999999998864
No 56
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=2.4e-28 Score=250.68 Aligned_cols=278 Identities=17% Similarity=0.230 Sum_probs=188.3
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
...++|+|||||++|+++|..|++.|++|+++|+.+.+||.|... + +.+....++.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------i---------p~~~~~~~~~ 246 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------I---------PRFRLPESVI 246 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------C---------CCCCCCHHHH
Confidence 456899999999999999999999999999999999999887542 1 1112234555
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
+...+.+.+.++++++++.+ ..+ ++..+ ....||.||+|||.. .+..+++||.+. .+ +
T Consensus 247 ~~~~~~l~~~Gv~i~~~~~v-~~d---------v~~~~---------~~~~~DaVilAtGa~-~~~~~~ipG~~~-~g-v 304 (652)
T PRK12814 247 DADIAPLRAMGAEFRFNTVF-GRD---------ITLEE---------LQKEFDAVLLAVGAQ-KASKMGIPGEEL-PG-V 304 (652)
T ss_pred HHHHHHHHHcCCEEEeCCcc-cCc---------cCHHH---------HHhhcCEEEEEcCCC-CCCCCCCCCcCc-CC-c
Confidence 66666677788888877644 110 12222 123499999999942 234556777543 22 1
Q ss_pred eeccCC-----CCCCCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecccccCCcchhhhHHHHhhcchH
Q 013943 191 RHTSLY-----KSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMR 264 (433)
Q Consensus 191 ~~~~~~-----~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~ 264 (433)
+....+ .......+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|.... .
T Consensus 305 ~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~-----------------e 367 (652)
T PRK12814 305 ISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRA-----------------E 367 (652)
T ss_pred EeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----------------H
Confidence 211111 11223568999999999999999999999986 699999887434442110 0
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe-------------
Q 013943 265 LVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK------------- 329 (433)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~------------- 329 (433)
.. +. .+.+|+++.. +.++.
T Consensus 368 i~---------------------------------------------~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~ 401 (652)
T PRK12814 368 IE---------------------------------------------EA-LAEGVSLRELAAPVSIERSEGGLELTAIKM 401 (652)
T ss_pred HH---------------------------------------------HH-HHcCCcEEeccCcEEEEecCCeEEEEEEEE
Confidence 00 00 0112222221 11111
Q ss_pred ------CCe---EEEcCCc--EecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc--
Q 013943 330 ------RYA---VEFVNGR--CENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-- 396 (433)
Q Consensus 330 ------~~~---v~~~~g~--~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-- 396 (433)
.++ ....+|+ ++++|.||+|+|..|+. .++...++..+.+|++.+|..+++|+.|+|||+||+...
T Consensus 402 ~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~-~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~ 480 (652)
T PRK12814 402 QQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDP-PIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD 480 (652)
T ss_pred EecccCCCCCCcceecCCceEEEECCEEEECCCCcCCc-ccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch
Confidence 000 1111232 58999999999999998 677777777767899999966788999999999999864
Q ss_pred -cccchhhHHHHHHHHHhhhccC
Q 013943 397 -LLGVAMDAKRIAQDIESCWKAK 418 (433)
Q Consensus 397 -~~~a~~~g~~~a~~i~~~l~~~ 418 (433)
+..|+.+|+.+|.+|...|...
T Consensus 481 ~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 481 IAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 3479999999999999998764
No 57
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.96 E-value=3.3e-28 Score=253.44 Aligned_cols=290 Identities=18% Similarity=0.238 Sum_probs=180.5
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
...++|+||||||||+++|..|++.|++|+|+|+.+.+||..... ++ .+....+..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------IP---------~~rlp~e~l 590 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------IP---------EFRISAESI 590 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------cc---------ccCCCHHHH
Confidence 346899999999999999999999999999999999898865331 11 111123445
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
+...+.+...+++++++... . ++..+. ....||+||+|||+. .+..+.++|... .+
T Consensus 591 ~~~ie~l~~~GVe~~~g~~~----------d--~~ve~l--------~~~gYDaVIIATGA~-~~~~l~I~G~~~---~v 646 (1012)
T TIGR03315 591 QKDIELVKFHGVEFKYGCSP----------D--LTVAEL--------KNQGYKYVILAIGAW-KHGPLRLEGGGE---RV 646 (1012)
T ss_pred HHHHHHHHhcCcEEEEeccc----------c--eEhhhh--------hcccccEEEECCCCC-CCCCCCcCCCCc---ce
Confidence 55556666778887776321 0 111221 345689999999952 233345666432 12
Q ss_pred eeccCC----CC--CCCCCCCeEEEECCCCcHHHHHHHHhcc-CC-CcEEEEecCcceecccccCCcchhhhHHHHhhcc
Q 013943 191 RHTSLY----KS--GEDFRGKRVLVVGCGNSGMEVCLDLCNH-DA-MPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLP 262 (433)
Q Consensus 191 ~~~~~~----~~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~-g~-~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~ 262 (433)
....++ .. .....+++|+|||+|++|+|+|..+.+. |. +|++++|+....+|....
T Consensus 647 ~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~e---------------- 710 (1012)
T TIGR03315 647 LKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASRE---------------- 710 (1012)
T ss_pred eeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHH----------------
Confidence 221111 11 1234689999999999999999999886 64 899999987434442110
Q ss_pred hHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC-ceEEeCCe--EEEcCCc
Q 013943 263 MRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG-IKRLKRYA--VEFVNGR 339 (433)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~~--v~~~~g~ 339 (433)
.+. . .. ..++. +.... . ...+.++++.+..- +...+..+ ....+|+
T Consensus 711 -El~----~----al-----eeGVe--------~~~~~--~-------p~~I~~g~l~v~~~~l~~~d~sGr~~~v~~Ge 759 (1012)
T TIGR03315 711 -ELE----E----AL-----EDGVD--------FKELL--S-------PESFEDGTLTCEVMKLGEPDASGRRRPVGTGE 759 (1012)
T ss_pred -HHH----H----HH-----HcCCE--------EEeCC--c-------eEEEECCeEEEEEEEeecccCCCceeeecCCC
Confidence 000 0 00 00110 00000 0 00011122221100 00011111 1122343
Q ss_pred --EecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhhHHHHHHHHHhh
Q 013943 340 --CENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 340 --~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~g~~~a~~i~~~ 414 (433)
++++|.||+|+|..|+. .++++.++..+++|++.+|...++|+.|+|||+||++.+ +..|+.+|+.+|.+|.++
T Consensus 760 e~~I~aD~VIvAiG~~Pnt-~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 760 TVDLPADTVIAAVGEQVDT-DLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred eEEEEeCEEEEecCCcCCh-HHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 58999999999999998 677777777678899999854578899999999999854 457999999999999865
Q ss_pred hc
Q 013943 415 WK 416 (433)
Q Consensus 415 l~ 416 (433)
..
T Consensus 839 ~~ 840 (1012)
T TIGR03315 839 EG 840 (1012)
T ss_pred cc
Confidence 43
No 58
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=6.2e-28 Score=231.52 Aligned_cols=287 Identities=18% Similarity=0.177 Sum_probs=186.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.-++|+|||+|++|+.+|..|++.|++++++|+.+.++|.+... ++.. ....+.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~~~--------~~~~~~~~~ 73 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IPEF--------RIPIERVRE 73 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Cccc--------ccCHHHHHH
Confidence 34689999999999999999999999999999998887764321 0000 012333444
Q ss_pred HHHHHHHHcCCcceecceEEEEEE--eCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCc
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEY--DATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGD 189 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~--~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~ 189 (433)
...++ .+.+++++.++.+..++. ......|....... . ...+.||+||+|||+ ..+..|++||.+.. +
T Consensus 74 ~~~~l-~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~d~lviAtGs-~~~~~~~ipg~~~~-~- 143 (352)
T PRK12770 74 GVKEL-EEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSL----E--ELVKKYDAVLIATGT-WKSRKLGIPGEDLP-G- 143 (352)
T ss_pred HHHHH-HhCCeEEecCcEEeeccccccccccccccccCCH----H--HHHhhCCEEEEEeCC-CCCCcCCCCCcccc-C-
Confidence 44444 445888888877755432 11112222111110 0 124689999999994 24677888876431 1
Q ss_pred eeecc-------CC----C---CCCCCCCCeEEEECCCCcHHHHHHHHhccCCC-cEEEEecCcceecccccCCcchhhh
Q 013943 190 IRHTS-------LY----K---SGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAM-PSLVVRDTVHVLPQEMLGKSTFGLS 254 (433)
Q Consensus 190 ~~~~~-------~~----~---~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-Vtl~~r~~~~~lp~~~~~~~~~~~~ 254 (433)
+.... .. . ......+++++|||+|.+|+|+|..|...|.+ |+++.|++....+ ..
T Consensus 144 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~----------~~ 213 (352)
T PRK12770 144 VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP----------AG 213 (352)
T ss_pred ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC----------CC
Confidence 11110 00 0 11123478999999999999999999988886 9999887621000 00
Q ss_pred HHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC-
Q 013943 255 MWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY- 331 (433)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~- 331 (433)
....+.+.+.+|+++.+ +.++..+
T Consensus 214 -----------------------------------------------------~~~~~~l~~~gi~i~~~~~v~~i~~~~ 240 (352)
T PRK12770 214 -----------------------------------------------------KYEIERLIARGVEFLELVTPVRIIGEG 240 (352)
T ss_pred -----------------------------------------------------HHHHHHHHHcCCEEeeccCceeeecCC
Confidence 00012233345555543 3333321
Q ss_pred e---EEE--------------------cCCcEecccEEEEccCCCCCCCCcccc-ccccccCCCCcCCCCCCCCCCCCce
Q 013943 332 A---VEF--------------------VNGRCENFDAIILATGYRSNVPSWLKE-SEMFSRKDGLPRRPFPNGWKGESGL 387 (433)
Q Consensus 332 ~---v~~--------------------~~g~~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~i 387 (433)
. +.+ .+++++++|.||+|+|+.|+. .+..+ .++..+++|++.+| +..+++.|+|
T Consensus 241 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~-~l~~~~~g~~~~~~g~i~vd-~~~~t~~~~v 318 (352)
T PRK12770 241 RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP-PFAKECLGIELNRKGEIVVD-EKHMTSREGV 318 (352)
T ss_pred cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc-hhhhcccCceecCCCcEeeC-CCcccCCCCE
Confidence 1 111 123569999999999999997 56666 57666677888888 5678899999
Q ss_pred EEeeecccc---cccchhhHHHHHHHHHhhhc
Q 013943 388 YSVGFTKRG---LLGVAMDAKRIAQDIESCWK 416 (433)
Q Consensus 388 ya~Gd~~~~---~~~a~~~g~~~a~~i~~~l~ 416 (433)
|++|||+.. +..|+.+|+.+|.+|.+.|.
T Consensus 319 yaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 319 FAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred EEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 999999864 44789999999999998874
No 59
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.96 E-value=3.5e-28 Score=240.27 Aligned_cols=296 Identities=14% Similarity=0.142 Sum_probs=184.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-cccccccCceeeecCCceee----cCCCCCCCCCCCCCCHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS-LWQLKTYDRLRLHLPKQFCE----LPLMGFPSEFPTYPSKQ 107 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 107 (433)
.|||+|||+|++|..+|.. ..|.+|+++|++ .+|| +.+..+.|.-.+........ ...+...... .-++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~-~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEI-DSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCC-CccCHH
Confidence 4899999999999998654 469999999986 4676 34444444433221111100 0000000000 001222
Q ss_pred HHHHHHHH------------HH---HHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCC
Q 013943 108 QFVDYLEA------------YA---KRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGEN 172 (433)
Q Consensus 108 ~~~~~l~~------------~~---~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~ 172 (433)
.+..+... +. ++.++++..++.+.. +.++|.+.++ ..++||+||+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~-------~~~~V~~~~g--------~~~~~d~lIiATG-- 140 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV-------GPRTLRTGDG--------EEITGDQIVIAAG-- 140 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe-------cCCEEEECCC--------cEEEeCEEEEEEC--
Confidence 22222211 11 113555554432211 1233665554 5799999999999
Q ss_pred CCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchh
Q 013943 173 AEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFG 252 (433)
Q Consensus 173 ~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~ 252 (433)
++|..|++.+.. +..+.+..........+++++|||+|++|+|+|..|.+.|.+|+++.+.+ .+++..+.
T Consensus 141 s~p~~p~~~~~~---~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~------ 210 (452)
T TIGR03452 141 SRPYIPPAIADS---GVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDE------ 210 (452)
T ss_pred CCCCCCCCCCCC---CCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCH------
Confidence 888887643321 11122221111122347899999999999999999999999999999887 34442211
Q ss_pred hhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC
Q 013943 253 LSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR 330 (433)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~ 330 (433)
.....+ .+.+ +.+|+++.+ +.++..
T Consensus 211 -----------~~~~~l-----------------------------------------~~~~-~~gI~i~~~~~V~~i~~ 237 (452)
T TIGR03452 211 -----------DISDRF-----------------------------------------TEIA-KKKWDIRLGRNVTAVEQ 237 (452)
T ss_pred -----------HHHHHH-----------------------------------------HHHH-hcCCEEEeCCEEEEEEE
Confidence 110000 1112 234666655 666652
Q ss_pred --Ce--EEEcCCcEecccEEEEccCCCCCCCCcc--ccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccch
Q 013943 331 --YA--VEFVNGRCENFDAIILATGYRSNVPSWL--KESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVA 401 (433)
Q Consensus 331 --~~--v~~~~g~~~~~D~vi~atG~~~~~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~ 401 (433)
++ +.+.+|+++++|.|++|+|+.|+. .++ ...++..+++|++.+| ++++|+.|+|||+|||+.. ...|.
T Consensus 238 ~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~-~~l~~~~~gl~~~~~G~i~vd-~~~~Ts~~~IyA~GD~~~~~~l~~~A~ 315 (452)
T TIGR03452 238 DGDGVTLTLDDGSTVTADVLLVATGRVPNG-DLLDAEAAGVEVDEDGRIKVD-EYGRTSARGVWALGDVSSPYQLKHVAN 315 (452)
T ss_pred cCCeEEEEEcCCCEEEcCEEEEeeccCcCC-CCcCchhcCeeECCCCcEeeC-CCcccCCCCEEEeecccCcccChhHHH
Confidence 23 455678889999999999999998 453 3447776788999999 6778999999999999964 44689
Q ss_pred hhHHHHHHHHHhh
Q 013943 402 MDAKRIAQDIESC 414 (433)
Q Consensus 402 ~~g~~~a~~i~~~ 414 (433)
.+|+.+|++|.+.
T Consensus 316 ~~g~~~a~ni~~~ 328 (452)
T TIGR03452 316 AEARVVKHNLLHP 328 (452)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999854
No 60
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.96 E-value=7.6e-29 Score=219.69 Aligned_cols=189 Identities=39% Similarity=0.659 Sum_probs=136.3
Q ss_pred EEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCCcccccccCceeeecCCce---eecCCCC---CCC-----CCCCCC
Q 013943 37 VIVGAGPSGLATAACLKERGIP-SILLERSNCIASLWQLKTYDRLRLHLPKQF---CELPLMG---FPS-----EFPTYP 104 (433)
Q Consensus 37 vIIGaG~aGl~~A~~L~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~---~~~~~~~---~~~-----~~~~~~ 104 (433)
+||||||+|+++|..|.++|.+ ++|+|+++.+||.|.. .++...+..+..+ +.++.+. +.. ....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR-YYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC-H-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE-eCCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 6999999999999999999998 9999999999999985 2222222233221 1111111 000 123457
Q ss_pred CHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccC-C
Q 013943 105 SKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEG-S 183 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g-~ 183 (433)
+.+++.+|+++++++++++++++++|++++..++ .|+|++.++ ++++||.||+|||.++.|++|.+++ .
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~w~v~~~~~--------~~~~a~~VVlAtG~~~~p~~p~~~g~~ 149 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGD--GWTVTTRDG--------RTIRADRVVLATGHYSHPRIPDIPGSA 149 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEETT--TEEEEETTS---------EEEEEEEEE---SSCSB---S-TTGG
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEecc--EEEEEEEec--------ceeeeeeEEEeeeccCCCCcccccccc
Confidence 8999999999999999999999999999999974 499999875 7899999999999888999999988 3
Q ss_pred CCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcc
Q 013943 184 DEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVH 239 (433)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~ 239 (433)
.. ..+|+..+.+...+.+++|+|||+|.||+|++..|++.|++|++++|++.|
T Consensus 150 ~~---~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 150 FR---PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp CS---EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred cc---ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 22 678998888888899999999999999999999999999999999999965
No 61
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.96 E-value=4.7e-28 Score=240.60 Aligned_cols=287 Identities=18% Similarity=0.225 Sum_probs=188.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.-++|+|||+|++|+++|..|++.|++|++||+.+.+||.+... + +.+....++.+
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------i---------p~~~~~~~~~~ 197 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------I---------PDFKLEKEVID 197 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------C---------CcccCCHHHHH
Confidence 44799999999999999999999999999999999888875431 1 11122244556
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCcee
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIR 191 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~ 191 (433)
...+++.+.++++++++.+.. + +...+ ....||.||+|||. ..+..++++|.+. .+ +.
T Consensus 198 ~~~~~~~~~gv~~~~~~~v~~-~---------~~~~~---------~~~~~d~vvlAtGa-~~~~~l~ipG~~~-~g-V~ 255 (471)
T PRK12810 198 RRIELMEAEGIEFRTNVEVGK-D---------ITAEE---------LLAEYDAVFLGTGA-YKPRDLGIPGRDL-DG-VH 255 (471)
T ss_pred HHHHHHHhCCcEEEeCCEECC-c---------CCHHH---------HHhhCCEEEEecCC-CCCCcCCCCCccC-CC-cE
Confidence 666677788999888876521 0 11111 23479999999994 2366667777543 22 11
Q ss_pred eccC-------------CCCCCCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecccccCCcchhhhHHH
Q 013943 192 HTSL-------------YKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQEMLGKSTFGLSMWL 257 (433)
Q Consensus 192 ~~~~-------------~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~ 257 (433)
.... ........+++|+|||+|++|+|+|..+.+.|. +|+.+.+.+ +|....... ..
T Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~---~~~~~~~~~-~~----- 326 (471)
T PRK12810 256 FAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP---MPPSRRNKN-NP----- 326 (471)
T ss_pred EHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC---CCccccccc-cC-----
Confidence 1100 011123568999999999999999999888876 788543332 221110000 00
Q ss_pred HhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCc-hhhhhhhcCCeEEecC--ceEEeC--Ce
Q 013943 258 LKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDA-GTLAKIKSGHIRVFPG--IKRLKR--YA 332 (433)
Q Consensus 258 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~--v~~~~~--~~ 332 (433)
.+.+.. ...+.+.+.+|+++.+ +.++.. +.
T Consensus 327 ---------------------------------------------~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~ 361 (471)
T PRK12810 327 ---------------------------------------------WPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGK 361 (471)
T ss_pred ---------------------------------------------CcccchHHHHHHHHHcCCeEEeccCceEEEccCCE
Confidence 000000 0012233345665554 445532 11
Q ss_pred ---EE-----EcCC---------cEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeeccc
Q 013943 333 ---VE-----FVNG---------RCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKR 395 (433)
Q Consensus 333 ---v~-----~~~g---------~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~ 395 (433)
|. +.+| +++++|.||+|+|..|+...|+++.++..+++|.+.+|.+.++|+.|+||++||++.
T Consensus 362 v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~ 441 (471)
T PRK12810 362 VTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRR 441 (471)
T ss_pred EEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCC
Confidence 11 1122 469999999999999986457777787777789888874567899999999999986
Q ss_pred c---cccchhhHHHHHHHHHhhhccC
Q 013943 396 G---LLGVAMDAKRIAQDIESCWKAK 418 (433)
Q Consensus 396 ~---~~~a~~~g~~~a~~i~~~l~~~ 418 (433)
+ +..|+.+|+.+|.+|..+|...
T Consensus 442 g~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 442 GQSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 3479999999999999998753
No 62
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.96 E-value=2e-28 Score=247.97 Aligned_cols=307 Identities=17% Similarity=0.155 Sum_probs=187.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CCCCCc-ccccccCceeeecCCc------------eeecC-----C
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERS-NCIASL-WQLKTYDRLRLHLPKQ------------FCELP-----L 93 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~-~~~gg~-w~~~~~~~~~~~~~~~------------~~~~~-----~ 93 (433)
.|||+|||+|++|..+|..+++.|.+|+|||+. ..+||. ....+.|.-.+..... .+++. .
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999999999999999975 357773 3333444322111110 01111 0
Q ss_pred ---CCCCCC--C--CCCCCHHHHHHHHHHHHHHcC--Ccc-------eecceEEEEEEeC----CCCeEEEEEeecCcCC
Q 013943 94 ---MGFPSE--F--PTYPSKQQFVDYLEAYAKRFE--IRP-------RFNETVSQAEYDA----TIRFWRVKTTVGGQKC 153 (433)
Q Consensus 94 ---~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~--l~~-------~~~~~v~~v~~~~----~~~~~~v~~~~g~~~~ 153 (433)
.+.+.+ . ..-.....+.++......+.. +.- ...++.+.+.... +...+++. .++
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~-~~g---- 270 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE-KSG---- 270 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc-cCC----
Confidence 000000 0 001244444444444333221 110 1111122222211 11222222 222
Q ss_pred CceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEE
Q 013943 154 GVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLV 233 (433)
Q Consensus 154 ~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~ 233 (433)
..+.||+|||||| ++|.+|++++.+. ..+.++.........+++++|||+|.+|+|+|..+...|.+||++
T Consensus 271 ----~~i~ad~lIIATG--S~P~~P~~~~~~~---~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLI 341 (659)
T PTZ00153 271 ----KEFKVKNIIIATG--STPNIPDNIEVDQ---KSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSF 341 (659)
T ss_pred ----EEEECCEEEEcCC--CCCCCCCCCCCCC---CcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 5799999999999 8888887555432 222333322223335789999999999999999999999999999
Q ss_pred EecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhh
Q 013943 234 VRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAK 313 (433)
Q Consensus 234 ~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (433)
.+.+ +++|..+. .... ...+.
T Consensus 342 e~~~-~ll~~~d~-----eis~-----------------------------------------------------~l~~~ 362 (659)
T PTZ00153 342 EYSP-QLLPLLDA-----DVAK-----------------------------------------------------YFERV 362 (659)
T ss_pred eccC-cccccCCH-----HHHH-----------------------------------------------------HHHHH
Confidence 9988 56653221 0000 01121
Q ss_pred -hhcCCeEEecC--ceEEeCCe----EEE--cC-------C--------cEecccEEEEccCCCCCCCCc-ccccccccc
Q 013943 314 -IKSGHIRVFPG--IKRLKRYA----VEF--VN-------G--------RCENFDAIILATGYRSNVPSW-LKESEMFSR 368 (433)
Q Consensus 314 -~~~~~v~~~~~--v~~~~~~~----v~~--~~-------g--------~~~~~D~vi~atG~~~~~~~~-~~~~~l~~~ 368 (433)
+++.+|+++.+ +.+++.+. +.+ .+ + +++++|.||+|+|+.||+..+ +...++..
T Consensus 363 ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~- 441 (659)
T PTZ00153 363 FLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQM- 441 (659)
T ss_pred HhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcc-
Confidence 23457888776 66665321 332 11 1 369999999999999998434 34557666
Q ss_pred CCCCcCCCCCCCCCC------CCceEEeeecccc---cccchhhHHHHHHHHHhh
Q 013943 369 KDGLPRRPFPNGWKG------ESGLYSVGFTKRG---LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 369 ~~g~~~~~~~~~~~~------~~~iya~Gd~~~~---~~~a~~~g~~~a~~i~~~ 414 (433)
++|++.+| ++++++ .|+|||+|||+.. +..|..+|+.+|++|.+.
T Consensus 442 ~~G~I~VD-e~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 442 KRGFVSVD-EHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred cCCEEeEC-CCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 45889998 567775 6999999999964 447899999999999864
No 63
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1e-27 Score=213.60 Aligned_cols=311 Identities=16% Similarity=0.221 Sum_probs=208.5
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-cccccCceeee----cCCceeecCCCCCCCC------
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW-QLKTYDRLRLH----LPKQFCELPLMGFPSE------ 99 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w-~~~~~~~~~~~----~~~~~~~~~~~~~~~~------ 99 (433)
...||.+|||||-+|++.|++.+++|.++.++|..-.+||+- ...+.|.-.+- ....+.+...+.|+.+
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 357999999999999999999999999999999987788742 22223221111 1111112222333321
Q ss_pred CCCC-CCHHHHHHHHHHHHHH----cCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 100 FPTY-PSKQQFVDYLEAYAKR----FEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 100 ~~~~-~~~~~~~~~l~~~~~~----~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
|..+ -.++++...|....++ ..+++..++ . ....+ ..+.|...++ ....+++++++|||| ++
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~-a---~f~~~-~~v~V~~~d~------~~~~Ytak~iLIAtG--g~ 164 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR-A---RFVSP-GEVEVEVNDG------TKIVYTAKHILIATG--GR 164 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeee-E---EEcCC-CceEEEecCC------eeEEEecceEEEEeC--Cc
Confidence 1111 1344555444443332 223332221 1 11112 3445555543 135699999999999 99
Q ss_pred CccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhh
Q 013943 175 AVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLS 254 (433)
Q Consensus 175 p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~ 254 (433)
|.+|.+||.+. .+.+....+ .+..+++++|||+|++|+|+|.-++.+|++++++.|.. .+|..++.
T Consensus 165 p~~PnIpG~E~----gidSDgff~-Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~-------- 230 (478)
T KOG0405|consen 165 PIIPNIPGAEL----GIDSDGFFD-LEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDE-------- 230 (478)
T ss_pred cCCCCCCchhh----ccccccccc-hhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhH--------
Confidence 99999999763 233333333 34568899999999999999999999999999999998 34332221
Q ss_pred HHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC-
Q 013943 255 MWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY- 331 (433)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~- 331 (433)
.+++..-+.+...+|+++.. +.++...
T Consensus 231 --------------------------------------------------~i~~~v~~~~~~~ginvh~~s~~~~v~K~~ 260 (478)
T KOG0405|consen 231 --------------------------------------------------MISDLVTEHLEGRGINVHKNSSVTKVIKTD 260 (478)
T ss_pred --------------------------------------------------HHHHHHHHHhhhcceeecccccceeeeecC
Confidence 12222234556667888876 4444321
Q ss_pred -e---EEEcCCcEecccEEEEccCCCCCCCCccccc-cccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchhh
Q 013943 332 -A---VEFVNGRCENFDAIILATGYRSNVPSWLKES-EMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAMD 403 (433)
Q Consensus 332 -~---v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~~ 403 (433)
+ +....+....+|.++||+|..|+...+..+. |+..|+.|.+++| +++.|++|+||++||++.- ...|...
T Consensus 261 ~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivD-eYq~Tnvp~I~avGDv~gk~~LTPVAiaa 339 (478)
T KOG0405|consen 261 DGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVD-EYQNTNVPSIWAVGDVTGKINLTPVAIAA 339 (478)
T ss_pred CCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEe-ccccCCCCceEEeccccCcEecchHHHhh
Confidence 2 3345565566999999999999996665554 8888899999999 8999999999999999974 5578999
Q ss_pred HHHHHHHHHhhhccCC
Q 013943 404 AKRIAQDIESCWKAKA 419 (433)
Q Consensus 404 g~~~a~~i~~~l~~~~ 419 (433)
|+.+|+.+.+..+..+
T Consensus 340 gr~la~rlF~~~~~~k 355 (478)
T KOG0405|consen 340 GRKLANRLFGGGKDTK 355 (478)
T ss_pred hhhHHHHhhcCCCCCc
Confidence 9999999987544433
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=1.1e-27 Score=254.39 Aligned_cols=280 Identities=18% Similarity=0.195 Sum_probs=189.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
..++|+|||||||||++|..|+++|++|+|||+.+.+||.... ..+.+....++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~------------------------gip~~rl~~e~~~ 484 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY------------------------GIPSFRLPRDIID 484 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec------------------------cCCccCCCHHHHH
Confidence 4689999999999999999999999999999999988876433 1122233456777
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCcee
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIR 191 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~ 191 (433)
...+.+.+.++++++++.+ + .. ++..+. .....||.||+|||+ ..|+.+++||.+. .+ ++
T Consensus 485 ~~~~~l~~~Gv~~~~~~~v------g--~~--~~~~~l-------~~~~~yDaViIATGa-~~pr~l~IpG~~l-~g-V~ 544 (1006)
T PRK12775 485 REVQRLVDIGVKIETNKVI------G--KT--FTVPQL-------MNDKGFDAVFLGVGA-GAPTFLGIPGEFA-GQ-VY 544 (1006)
T ss_pred HHHHHHHHCCCEEEeCCcc------C--Cc--cCHHHH-------hhccCCCEEEEecCC-CCCCCCCCCCcCC-CC-cE
Confidence 7777888889999888644 1 11 111110 012458999999995 3577788888643 22 22
Q ss_pred eccC--------------CCCCCCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecccccCCcchhhhHH
Q 013943 192 HTSL--------------YKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQEMLGKSTFGLSMW 256 (433)
Q Consensus 192 ~~~~--------------~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~~~~~~~~~~~~~~ 256 (433)
+..+ +.+.....+++|+|||+|++|+|+|..+.+.|. .|++++|+....+|....
T Consensus 545 ~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~---------- 614 (1006)
T PRK12775 545 SANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIE---------- 614 (1006)
T ss_pred EHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHH----------
Confidence 2211 112223468999999999999999999999987 588888776333221100
Q ss_pred HHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--CC-
Q 013943 257 LLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK--RY- 331 (433)
Q Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~- 331 (433)
..+.+.+.+|+++.. +.++. ++
T Consensus 615 -----------------------------------------------------e~~~a~eeGI~~~~~~~p~~i~~~~~G 641 (1006)
T PRK12775 615 -----------------------------------------------------EIRHAKEEGIDFFFLHSPVEIYVDAEG 641 (1006)
T ss_pred -----------------------------------------------------HHHHHHhCCCEEEecCCcEEEEeCCCC
Confidence 001122233444332 22221 11
Q ss_pred e---EEE-----------------cCC--cEecccEEEEccCCCCCCCCccccc-cccccCCCCcCCCC----CCCCCCC
Q 013943 332 A---VEF-----------------VNG--RCENFDAIILATGYRSNVPSWLKES-EMFSRKDGLPRRPF----PNGWKGE 384 (433)
Q Consensus 332 ~---v~~-----------------~~g--~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~g~~~~~~----~~~~~~~ 384 (433)
. +.+ .+| .++++|.||+|+|+.|+. .++... ++..+++|.+.+|. ..++|+.
T Consensus 642 ~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~-~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~ 720 (1006)
T PRK12775 642 SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP-IITQSTPGLALNKWGNIAADDGKLESTQSTNL 720 (1006)
T ss_pred eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCCh-hhhhccCCcccCCCCcEEeCCCccccCcCCCC
Confidence 0 111 122 359999999999999997 455543 56656788888874 3678999
Q ss_pred CceEEeeecccc---cccchhhHHHHHHHHHhhhccCC
Q 013943 385 SGLYSVGFTKRG---LLGVAMDAKRIAQDIESCWKAKA 419 (433)
Q Consensus 385 ~~iya~Gd~~~~---~~~a~~~g~~~a~~i~~~l~~~~ 419 (433)
|+|||+||++.+ +..|+.+|+.+|.+|...|....
T Consensus 721 pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~ 758 (1006)
T PRK12775 721 PGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLGK 758 (1006)
T ss_pred CCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999865 45799999999999999988643
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=2e-27 Score=244.98 Aligned_cols=278 Identities=18% Similarity=0.238 Sum_probs=186.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.-++|+|||+||+|+++|..|++.|++|+|||+.+.+||.+... ++ .+....++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------ip---------~~~l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------IP---------AFKLDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------CC---------CccCCHHHHH
Confidence 45799999999999999999999999999999999999876542 11 1112245566
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCcee
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIR 191 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~ 191 (433)
...+.++++++++++++.|.. + +...+ ....||.||+|||++ .+..+.++|.+. .|...
T Consensus 382 ~~~~~~~~~Gv~~~~~~~v~~-----~-----i~~~~---------~~~~~DavilAtGa~-~~~~l~i~g~~~-~Gv~~ 440 (654)
T PRK12769 382 RRREIFSAMGIEFELNCEVGK-----D-----ISLES---------LLEDYDAVFVGVGTY-RSMKAGLPNEDA-PGVYD 440 (654)
T ss_pred HHHHHHHHCCeEEECCCEeCC-----c-----CCHHH---------HHhcCCEEEEeCCCC-CCCCCCCCCCCC-CCeEE
Confidence 666677788988888876521 0 11111 123699999999963 333445666543 12110
Q ss_pred ----------e---ccCCCC--CCCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecccccCCcchhhhH
Q 013943 192 ----------H---TSLYKS--GEDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQEMLGKSTFGLSM 255 (433)
Q Consensus 192 ----------~---~~~~~~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~~~~~~~~~~~~~ 255 (433)
. .....+ .....+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|....
T Consensus 441 a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~--------- 511 (654)
T PRK12769 441 ALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK--------- 511 (654)
T ss_pred hHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH---------
Confidence 0 000000 112468899999999999999999999986 799999887433332110
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--C-
Q 013943 256 WLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK--R- 330 (433)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~- 330 (433)
..+.+.+.+|+++.. +.++. +
T Consensus 512 ------------------------------------------------------e~~~~~~~Gv~~~~~~~~~~i~~~~~ 537 (654)
T PRK12769 512 ------------------------------------------------------EVKNAREEGANFEFNVQPVALELNEQ 537 (654)
T ss_pred ------------------------------------------------------HHHHHHHcCCeEEeccCcEEEEECCC
Confidence 001122233443332 22221 1
Q ss_pred C---eEEE------------------cCC--cEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCC---CCCCCC
Q 013943 331 Y---AVEF------------------VNG--RCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFP---NGWKGE 384 (433)
Q Consensus 331 ~---~v~~------------------~~g--~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~---~~~~~~ 384 (433)
+ ++.+ ..| .++++|.||+|+|+.|+...+++..++..+++|.+.+|.. .++|+.
T Consensus 538 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~ 617 (654)
T PRK12769 538 GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSN 617 (654)
T ss_pred CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCC
Confidence 1 1111 122 2599999999999999964577777887778898888732 468999
Q ss_pred CceEEeeecccc---cccchhhHHHHHHHHHhhhcc
Q 013943 385 SGLYSVGFTKRG---LLGVAMDAKRIAQDIESCWKA 417 (433)
Q Consensus 385 ~~iya~Gd~~~~---~~~a~~~g~~~a~~i~~~l~~ 417 (433)
|+|||+||+..+ +..|+.+|+.+|.+|..+|..
T Consensus 618 ~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 618 PKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999875 347999999999999988764
No 66
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.95 E-value=1e-26 Score=230.13 Aligned_cols=275 Identities=17% Similarity=0.210 Sum_probs=186.3
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.-++|+|||+||+|+++|..|+++|++|+++|+.+.+||.+... + +.+....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------I---------PSFKLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------C---------ccccCCHHHHH
Confidence 45899999999999999999999999999999999998876431 1 11112345666
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC-ccCCccCCCCCCCce
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA-VVPEIEGSDEFGGDI 190 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p-~~p~~~g~~~~~~~~ 190 (433)
...+++.+.++++++++.+.. . +...+ ....||.||+|||. .+ ..++++|.+.. + +
T Consensus 196 ~~~~~~~~~Gv~~~~~~~v~~--------~--~~~~~---------~~~~~D~vilAtGa--~~~~~~~i~g~~~~-g-V 252 (467)
T TIGR01318 196 RRREIFTAMGIEFHLNCEVGR--------D--ISLDD---------LLEDYDAVFLGVGT--YRSMRGGLPGEDAP-G-V 252 (467)
T ss_pred HHHHHHHHCCCEEECCCEeCC--------c--cCHHH---------HHhcCCEEEEEeCC--CCCCcCCCCCcCCC-C-c
Confidence 777778888999888876621 0 11111 12469999999994 43 33457775531 1 1
Q ss_pred eecc-----------CCC-----CCCCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecccccCCcchhh
Q 013943 191 RHTS-----------LYK-----SGEDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQEMLGKSTFGL 253 (433)
Q Consensus 191 ~~~~-----------~~~-----~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~~~~~~~~~~~ 253 (433)
.+.. ... ......+++++|||+|.+|+|+|..+.+.|. +||+++|++...+|....
T Consensus 253 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~------- 325 (467)
T TIGR01318 253 LQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR------- 325 (467)
T ss_pred EEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH-------
Confidence 1100 000 0112457899999999999999999999985 799999987434432110
Q ss_pred hHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeC-
Q 013943 254 SMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKR- 330 (433)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~- 330 (433)
. .+.+.+.+|+++.+ +.++..
T Consensus 326 ---------------e-----------------------------------------~~~~~~~GV~~~~~~~~~~i~~~ 349 (467)
T TIGR01318 326 ---------------E-----------------------------------------VANAREEGVEFLFNVQPVYIECD 349 (467)
T ss_pred ---------------H-----------------------------------------HHHHHhcCCEEEecCCcEEEEEC
Confidence 0 01112233443333 333321
Q ss_pred -C-e---EEE--------------------cCCcEecccEEEEccCCCCCCCCccccccccccCCCCcCCCC---CCCCC
Q 013943 331 -Y-A---VEF--------------------VNGRCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPF---PNGWK 382 (433)
Q Consensus 331 -~-~---v~~--------------------~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~---~~~~~ 382 (433)
+ . +++ .+..++++|.||+|+|+.|+...++...++..+++|++.+|. ..++|
T Consensus 350 ~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T 429 (467)
T TIGR01318 350 EDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQT 429 (467)
T ss_pred CCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccC
Confidence 0 0 111 112368999999999999986456776677777788888873 35678
Q ss_pred CCCceEEeeeccccc---ccchhhHHHHHHHHHhhhc
Q 013943 383 GESGLYSVGFTKRGL---LGVAMDAKRIAQDIESCWK 416 (433)
Q Consensus 383 ~~~~iya~Gd~~~~~---~~a~~~g~~~a~~i~~~l~ 416 (433)
+.|+||++||++... ..|+.+|+.+|.+|...|.
T Consensus 430 ~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 430 TNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999998653 4799999999999998764
No 67
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-26 Score=206.66 Aligned_cols=290 Identities=20% Similarity=0.228 Sum_probs=217.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.-|||+||||||+|.++|...+|+|++.-++ .+.+||+-..- +.+.++- .-.+.....+..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvldT-------------~~IENfI----sv~~teGpkl~~ 270 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVLDT-------------MGIENFI----SVPETEGPKLAA 270 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeeccc-------------cchhhee----ccccccchHHHH
Confidence 4599999999999999999999999987766 23466642110 0111000 012235678888
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCC-CCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDAT-IRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
.+.+..+++++.+....+.+.+.+... .+.++|++.+| -.++++.+|+||| .+-+-..+||++.|....
T Consensus 271 ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG--------avLkaktvIlstG--ArWRn~nvPGE~e~rnKG 340 (520)
T COG3634 271 ALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG--------AVLKARTVILATG--ARWRNMNVPGEDEYRNKG 340 (520)
T ss_pred HHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC--------ceeccceEEEecC--cchhcCCCCchHHHhhCC
Confidence 999999999999877778888887533 25788999998 7999999999999 444445688999998888
Q ss_pred eeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHH
Q 013943 191 RHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLL 270 (433)
Q Consensus 191 ~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 270 (433)
...|..++...+.+|+|.|||||++|+|.|..|+...++||++.-.+.. .....+.+
T Consensus 341 VayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eL------------kAD~VLq~----------- 397 (520)
T COG3634 341 VAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEL------------KADAVLQD----------- 397 (520)
T ss_pred eeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhh------------hhHHHHHH-----------
Confidence 9999999999999999999999999999999999999999998544310 00000000
Q ss_pred HHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCe-----EEE---cCCcE
Q 013943 271 LVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYA-----VEF---VNGRC 340 (433)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~-----v~~---~~g~~ 340 (433)
++..-.|++++.+ -+++.+++ +.. .+|++
T Consensus 398 -----------------------------------------kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~ 436 (520)
T COG3634 398 -----------------------------------------KLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE 436 (520)
T ss_pred -----------------------------------------HHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce
Confidence 1111247787777 45665542 333 24443
Q ss_pred --ecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc----cccchhhHHHHHHHHHhh
Q 013943 341 --ENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG----LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 341 --~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~----~~~a~~~g~~~a~~i~~~ 414 (433)
++-+-|++-+|.-||+ .|+++. +..+..|.+++| ....|+.|||||+|||... +..++..|..++-....+
T Consensus 437 ~~l~LeGvFVqIGL~PNT-~WLkg~-vel~~rGEIivD-~~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDy 513 (520)
T COG3634 437 HHLELEGVFVQIGLLPNT-EWLKGA-VELNRRGEIIVD-ARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDY 513 (520)
T ss_pred eEEEeeeeEEEEecccCh-hHhhch-hhcCcCccEEEe-cCCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhhh
Confidence 6778899999999999 799988 444689999999 7889999999999999964 557888888888777776
Q ss_pred hcc
Q 013943 415 WKA 417 (433)
Q Consensus 415 l~~ 417 (433)
|.+
T Consensus 514 LIR 516 (520)
T COG3634 514 LIR 516 (520)
T ss_pred hee
Confidence 654
No 68
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=3.2e-26 Score=234.91 Aligned_cols=278 Identities=16% Similarity=0.215 Sum_probs=186.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.-++|+|||+|++|+++|..|++.|++|+++|+.+.+||.|.+. ++. +....++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------------ip~---------~~l~~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------------IPP---------FKLDKTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------------CCc---------ccCCHHHHH
Confidence 46899999999999999999999999999999999999987652 111 111245566
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCcee
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIR 191 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~ 191 (433)
...+++.+.|+++++++++.. + +...+ ....||.||+|||+. .+..+.++|.+. .|...
T Consensus 365 ~~~~~~~~~Gv~~~~~~~v~~-----~-----~~~~~---------l~~~~DaV~latGa~-~~~~~~i~g~~~-~gv~~ 423 (639)
T PRK12809 365 QRREIFTAMGIDFHLNCEIGR-----D-----ITFSD---------LTSEYDAVFIGVGTY-GMMRADLPHEDA-PGVIQ 423 (639)
T ss_pred HHHHHHHHCCeEEEcCCccCC-----c-----CCHHH---------HHhcCCEEEEeCCCC-CCCCCCCCCCcc-CCcEe
Confidence 666778888999888876621 1 11121 234689999999963 334455777543 22111
Q ss_pred e----------ccCCCC-----CCCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecccccCCcchhhhH
Q 013943 192 H----------TSLYKS-----GEDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQEMLGKSTFGLSM 255 (433)
Q Consensus 192 ~----------~~~~~~-----~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~~~~~~~~~~~~~ 255 (433)
. ...... .....+++++|||+|.+|+|+|..+.+.|. +||+++|++...+|....
T Consensus 424 a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~--------- 494 (639)
T PRK12809 424 ALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK--------- 494 (639)
T ss_pred HHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH---------
Confidence 0 000100 123468999999999999999999999885 899999886333332110
Q ss_pred HHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--C-
Q 013943 256 WLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK--R- 330 (433)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~- 330 (433)
.. ...++.+|+++.. +.++. +
T Consensus 495 --------e~----------------------------------------------~~a~~eGv~~~~~~~~~~i~~~~~ 520 (639)
T PRK12809 495 --------EV----------------------------------------------VNAREEGVEFQFNVQPQYIACDED 520 (639)
T ss_pred --------HH----------------------------------------------HHHHHcCCeEEeccCCEEEEECCC
Confidence 00 0011123333322 22221 0
Q ss_pred Ce---E------------------EE--cCCcEecccEEEEccCCCCCCCCccccccccccCCCCcCCCC---CCCCCCC
Q 013943 331 YA---V------------------EF--VNGRCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPF---PNGWKGE 384 (433)
Q Consensus 331 ~~---v------------------~~--~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~---~~~~~~~ 384 (433)
+. + .. .+..++++|.||+|+|+.|+...++++.++..+++|.+.+|. ..++|+.
T Consensus 521 g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~ 600 (639)
T PRK12809 521 GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHL 600 (639)
T ss_pred CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCC
Confidence 00 1 11 112358999999999999986467777777777789887763 2478999
Q ss_pred CceEEeeecccc---cccchhhHHHHHHHHHhhhcc
Q 013943 385 SGLYSVGFTKRG---LLGVAMDAKRIAQDIESCWKA 417 (433)
Q Consensus 385 ~~iya~Gd~~~~---~~~a~~~g~~~a~~i~~~l~~ 417 (433)
|+|||+||+..+ +..|+.+|+.+|.+|...|..
T Consensus 601 ~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 601 KKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred CCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999875 357999999999999998864
No 69
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.94 E-value=1.1e-25 Score=203.31 Aligned_cols=312 Identities=14% Similarity=0.107 Sum_probs=197.2
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc-ccccccCceeeecCCceeecCCC-CCCC----CCCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL-WQLKTYDRLRLHLPKQFCELPLM-GFPS----EFPTYP 104 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~-w~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~ 104 (433)
.+-|||+|||+||+|..+|...++.|++.+++|++..+||. ....+.|+-.+....+++..... .+.. ..+.-.
T Consensus 37 ~~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~ 116 (506)
T KOG1335|consen 37 ANDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSL 116 (506)
T ss_pred CccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceec
Confidence 36799999999999999999999999999999999999985 33445555433333333222111 0000 001112
Q ss_pred CHHHHHHHHHHHHHHcC--Cccee-cceEEEEEEe---CCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 105 SKQQFVDYLEAYAKRFE--IRPRF-NETVSQAEYD---ATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~~~--l~~~~-~~~v~~v~~~---~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
..+.+.+.....++++. ++..+ .-.|+.+.-. -+...+++.-. +++.+.+.++++|+|||+ ..+.
T Consensus 117 dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~------dg~~~ii~aKnIiiATGS-eV~~-- 187 (506)
T KOG1335|consen 117 DLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKI------DGEDQIIKAKNIIIATGS-EVTP-- 187 (506)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEecc------CCCceEEeeeeEEEEeCC-ccCC--
Confidence 34444444444443331 12111 1123222211 11133333333 345689999999999993 1333
Q ss_pred CccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHH
Q 013943 179 EIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLL 258 (433)
Q Consensus 179 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~ 258 (433)
+||.. .....+.++.-......-+++++|||+|.+|+|+..-..++|++||++.-.+ .+.+..+.
T Consensus 188 -~PGI~-IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~------------ 252 (506)
T KOG1335|consen 188 -FPGIT-IDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDG------------ 252 (506)
T ss_pred -CCCeE-ecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCH------------
Confidence 44542 1223344444444455678999999999999999999999999999997666 44443222
Q ss_pred hhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--CC-e-
Q 013943 259 KWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK--RY-A- 332 (433)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~-~- 332 (433)
.++..+.+.++.-++++..+ +...+ .+ .
T Consensus 253 ----------------------------------------------Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v 286 (506)
T KOG1335|consen 253 ----------------------------------------------EISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV 286 (506)
T ss_pred ----------------------------------------------HHHHHHHHHHHhcCceeEeccEEEEeeccCCCce
Confidence 12222334455556666655 33333 22 2
Q ss_pred -EEEc---CC--cEecccEEEEccCCCCCCCCcccc-ccccccCCCCcCCCCCCCCCCCCceEEeeecccccc---cchh
Q 013943 333 -VEFV---NG--RCENFDAIILATGYRSNVPSWLKE-SEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRGLL---GVAM 402 (433)
Q Consensus 333 -v~~~---~g--~~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~~~---~a~~ 402 (433)
+.+. ++ ++++||++++|+|.+|-+..|-.+ .++..|+.|++.++ +..++.+|+||++||+..++. .|..
T Consensus 287 ~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~-~~f~t~vP~i~~IGDv~~gpMLAhkAee 365 (506)
T KOG1335|consen 287 EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVN-TRFQTKVPHIYAIGDVTLGPMLAHKAEE 365 (506)
T ss_pred EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecc-ccccccCCceEEecccCCcchhhhhhhh
Confidence 2332 22 459999999999999988666444 48888899999999 778899999999999998744 6677
Q ss_pred hHHHHHHHHHh
Q 013943 403 DAKRIAQDIES 413 (433)
Q Consensus 403 ~g~~~a~~i~~ 413 (433)
+|..+.+.|..
T Consensus 366 egI~~VE~i~g 376 (506)
T KOG1335|consen 366 EGIAAVEGIAG 376 (506)
T ss_pred hchhheeeecc
Confidence 77777777754
No 70
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.94 E-value=5.5e-26 Score=214.63 Aligned_cols=207 Identities=29% Similarity=0.412 Sum_probs=131.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCCcccccc-cCceeeecC--CceeecCCCCCCCCC--------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERG-IPSILLERSNCIASLWQLKT-YDRLRLHLP--KQFCELPLMGFPSEF-------- 100 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g-~~v~iie~~~~~gg~w~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~-------- 100 (433)
+||+|+||.||++|++|..|.+.+ .+++++|+.+.+ .|...+ .++..+..+ +.+..+.+..-+-.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f--~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF--SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC--CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 689999999999999999999986 899999998755 577654 333333322 111111110000000
Q ss_pred ---------CCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCC--CeEEEEEeecCcCCCceeEEEEeCEEEEcc
Q 013943 101 ---------PTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATI--RFWRVKTTVGGQKCGVEEMEYRCRWLVVAT 169 (433)
Q Consensus 101 ---------~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~d~viiAt 169 (433)
..++++.+|.+|++|.+++++..++++++|++|++..+. ..|+|.+.+. .+....+.++.||+|+
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~----~g~~~~~~ar~vVla~ 155 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDS----DGDGETYRARNVVLAT 155 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEET----TS-EEEEEESEEEE--
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeec----CCCeeEEEeCeEEECc
Confidence 235799999999999999999769999999999998753 3699998642 3335899999999999
Q ss_pred CCCCCCccCCccCCCCCCCceeeccCCCCCC--CCCCCeEEEECCCCcHHHHHHHHhccCC--CcEEEEecCcceecccc
Q 013943 170 GENAEAVVPEIEGSDEFGGDIRHTSLYKSGE--DFRGKRVLVVGCGNSGMEVCLDLCNHDA--MPSLVVRDTVHVLPQEM 245 (433)
Q Consensus 170 G~~~~p~~p~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~G~~a~e~a~~l~~~g~--~Vtl~~r~~~~~lp~~~ 245 (433)
| ..|.+|...........++|++++.... ...+++|+|||||+||+|++..|.+.+. +|+|+.|++ ...|.++
T Consensus 156 G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~-~~~~~d~ 232 (341)
T PF13434_consen 156 G--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP-GFFPMDD 232 (341)
T ss_dssp ----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS-S-EB---
T ss_pred C--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC-ccCCCcc
Confidence 9 8899997543222235789998875433 5678899999999999999999999865 899999999 5556655
Q ss_pred cCC
Q 013943 246 LGK 248 (433)
Q Consensus 246 ~~~ 248 (433)
...
T Consensus 233 s~f 235 (341)
T PF13434_consen 233 SPF 235 (341)
T ss_dssp -CC
T ss_pred ccc
Confidence 433
No 71
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.94 E-value=8.7e-26 Score=211.14 Aligned_cols=265 Identities=20% Similarity=0.288 Sum_probs=191.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGI--PSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQF 109 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~--~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (433)
.-..++|||+|++|..|+..+++.+. +++++-++..+ .|+. ...++... .....+
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~-------pydr--~~Ls~~~~--------------~~~~~~ 129 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL-------PYDR--ARLSKFLL--------------TVGEGL 129 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC-------cccc--hhccccee--------------eccccc
Confidence 45789999999999999999999986 77777655432 1221 11111100 011222
Q ss_pred HHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCc
Q 013943 110 VDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGD 189 (433)
Q Consensus 110 ~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~ 189 (433)
.-...++.++.++++++++.|+.++.... . |.+.+| +.++|++++|||| +.++.|++||.+.. .
T Consensus 130 a~r~~e~Yke~gIe~~~~t~v~~~D~~~K--~--l~~~~G--------e~~kys~LilATG--s~~~~l~~pG~~~~--n 193 (478)
T KOG1336|consen 130 AKRTPEFYKEKGIELILGTSVVKADLASK--T--LVLGNG--------ETLKYSKLIIATG--SSAKTLDIPGVELK--N 193 (478)
T ss_pred cccChhhHhhcCceEEEcceeEEeecccc--E--EEeCCC--------ceeecceEEEeec--CccccCCCCCcccc--c
Confidence 22233466778999999999999999774 3 888887 8999999999999 78999999997631 1
Q ss_pred eeeccCCCCC-----CCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchH
Q 013943 190 IRHTSLYKSG-----EDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMR 264 (433)
Q Consensus 190 ~~~~~~~~~~-----~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~ 264 (433)
+....+..+. ..-...+++++|+|..|+|++..|...+.+||++.+.+ +.+|+...
T Consensus 194 v~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~------------------ 254 (478)
T KOG1336|consen 194 VFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFG------------------ 254 (478)
T ss_pred eeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhh------------------
Confidence 1111111111 11136789999999999999999999999999999998 66664111
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC------eEEEc
Q 013943 265 LVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY------AVEFV 336 (433)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~------~v~~~ 336 (433)
+.+-..+...+++.+|+++.+ +.+++.. .|.+.
T Consensus 255 ---------------------------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~ 295 (478)
T KOG1336|consen 255 ---------------------------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK 295 (478)
T ss_pred ---------------------------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEec
Confidence 111222235566778888876 6666543 37889
Q ss_pred CCcEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc
Q 013943 337 NGRCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG 396 (433)
Q Consensus 337 ~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~ 396 (433)
+++++++|+||+++|.+|++ .+++. +...++.|.+.+| ..++++.|||||+||++..
T Consensus 296 dg~~l~adlvv~GiG~~p~t-~~~~~-g~~~~~~G~i~V~-~~f~t~~~~VyAiGDva~f 352 (478)
T KOG1336|consen 296 DGKTLEADLVVVGIGIKPNT-SFLEK-GILLDSKGGIKVD-EFFQTSVPNVYAIGDVATF 352 (478)
T ss_pred cCCEeccCeEEEeecccccc-ccccc-cceecccCCEeeh-hceeeccCCcccccceeec
Confidence 99999999999999999999 56665 4444789999999 7899999999999999964
No 72
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.94 E-value=3.2e-25 Score=220.38 Aligned_cols=309 Identities=17% Similarity=0.201 Sum_probs=182.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.-++|+|||+|++|+++|..|++.|++|+++|+.+.+||...+. + +.+....++..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------i---------p~~~~~~~~~~ 197 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------I---------PNMKLDKAIVD 197 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------C---------CCccCCHHHHH
Confidence 34799999999999999999999999999999999888754321 1 11122234555
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCcee
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIR 191 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~ 191 (433)
...+++++.++++++++.+. .+ +.... ....||.||+|||.. .+..++++|.+. .+...
T Consensus 198 ~~~~~~~~~Gv~~~~~~~v~-~~---------~~~~~---------~~~~~d~VilAtGa~-~~~~l~i~G~~~-~gV~~ 256 (485)
T TIGR01317 198 RRIDLLSAEGIDFVTNTEIG-VD---------ISADE---------LKEQFDAVVLAGGAT-KPRDLPIPGREL-KGIHY 256 (485)
T ss_pred HHHHHHHhCCCEEECCCEeC-Cc---------cCHHH---------HHhhCCEEEEccCCC-CCCcCCCCCcCC-CCcEe
Confidence 56667778899998887763 11 11111 235699999999942 377778888653 22111
Q ss_pred ec-----c--CCC-------CCCCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecccccCCcchhhhHH
Q 013943 192 HT-----S--LYK-------SGEDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQEMLGKSTFGLSMW 256 (433)
Q Consensus 192 ~~-----~--~~~-------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~~~~~~~~~~~~~~ 256 (433)
.. . ... ......+++|+|||+|++|+|+|..+.+.+. +|+++.+.+ ..+....... .+..+
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~-~~~~~~~~~~---~~~~~ 332 (485)
T TIGR01317 257 AMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP-KPPEARAKDN---PWPEW 332 (485)
T ss_pred HHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC-CChhhccccc---CCCcc
Confidence 00 0 000 0122468999999999999999988888864 799998776 2221100000 00000
Q ss_pred HHhhcchHH-HHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhc--CCeEEec-C-ce-EEeC
Q 013943 257 LLKWLPMRL-VDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKS--GHIRVFP-G-IK-RLKR 330 (433)
Q Consensus 257 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~-~-v~-~~~~ 330 (433)
+... .+.... + -....++.. . .+.....+...+ +++.-+. . +. ..++
T Consensus 333 -----~~~~e~~~a~~---e----~~~~~gv~~-----~----------~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~ 385 (485)
T TIGR01317 333 -----PRVYRVDYAHE---E----AAAHYGRDP-----R----------EYSILTKEFIGDDEGKVTALRTVRVEWKKSQ 385 (485)
T ss_pred -----chhhhhHHHHH---h----hhhhcCccc-----e----------EEecCcEEEEEcCCCeEEEEEEEEEEeccCC
Confidence 0000 000000 0 000000000 0 000000000000 1111000 0 00 0001
Q ss_pred Ce---EEE-c-CCcEecccEEEEccCCC-CCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccch
Q 013943 331 YA---VEF-V-NGRCENFDAIILATGYR-SNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVA 401 (433)
Q Consensus 331 ~~---v~~-~-~g~~~~~D~vi~atG~~-~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~ 401 (433)
++ ... . +..++++|.||+|+|+. |+. .+++..++..+++|.+.++.+.++|+.|+|||+||++.+ +..|+
T Consensus 386 ~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~-~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av 464 (485)
T TIGR01317 386 DGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQ-ILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAI 464 (485)
T ss_pred CCCccceecCCceEEEECCEEEEccCcCCCcc-ccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHH
Confidence 11 111 1 22369999999999996 776 577777777667888855546789999999999999864 44799
Q ss_pred hhHHHHHHHHHhhhcc
Q 013943 402 MDAKRIAQDIESCWKA 417 (433)
Q Consensus 402 ~~g~~~a~~i~~~l~~ 417 (433)
.+|+.+|.+|..+|..
T Consensus 465 ~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 465 NEGRKAAAAVDRYLMG 480 (485)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999875
No 73
>PRK13984 putative oxidoreductase; Provisional
Probab=99.94 E-value=9.2e-26 Score=231.31 Aligned_cols=275 Identities=17% Similarity=0.220 Sum_probs=176.5
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
...++|+|||+|++|+++|..|.++|++|+|+|+.+..||.+... ++ .+....++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i~---------~~~~~~~~~ 336 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------IP---------SYRLPDEAL 336 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------CC---------cccCCHHHH
Confidence 456899999999999999999999999999999999888865431 11 111224445
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
....+.+++.+++++.++.|.. + +..+. ....||+||+|||. ..++.++++|.+.. + +
T Consensus 337 ~~~~~~~~~~gv~~~~~~~v~~-----~-----~~~~~---------~~~~yD~vilAtGa-~~~r~l~i~G~~~~-g-v 394 (604)
T PRK13984 337 DKDIAFIEALGVKIHLNTRVGK-----D-----IPLEE---------LREKHDAVFLSTGF-TLGRSTRIPGTDHP-D-V 394 (604)
T ss_pred HHHHHHHHHCCcEEECCCEeCC-----c-----CCHHH---------HHhcCCEEEEEcCc-CCCccCCCCCcCCc-C-e
Confidence 5555677788998888876621 0 11111 23479999999995 23566778886431 1 1
Q ss_pred eeccCCC---------CC-CCCCCCeEEEECCCCcHHHHHHHHhccCC------CcEEEEec-CcceecccccCCcchhh
Q 013943 191 RHTSLYK---------SG-EDFRGKRVLVVGCGNSGMEVCLDLCNHDA------MPSLVVRD-TVHVLPQEMLGKSTFGL 253 (433)
Q Consensus 191 ~~~~~~~---------~~-~~~~~~~v~VvG~G~~a~e~a~~l~~~g~------~Vtl~~r~-~~~~lp~~~~~~~~~~~ 253 (433)
.....+. .. ....+++|+|||||++|+|+|..+.+.+. +|+++... ....+|....
T Consensus 395 ~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~------- 467 (604)
T PRK13984 395 IQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADME------- 467 (604)
T ss_pred EeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHH-------
Confidence 2111110 00 11246899999999999999999998743 67776432 2111111000
Q ss_pred hHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--
Q 013943 254 SMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK-- 329 (433)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~-- 329 (433)
.+. + ..+.+|+++.+ +.++.
T Consensus 468 --------------e~~-----------------------------------------~-~~~~GV~i~~~~~~~~i~~~ 491 (604)
T PRK13984 468 --------------EIE-----------------------------------------E-GLEEGVVIYPGWGPMEVVIE 491 (604)
T ss_pred --------------HHH-----------------------------------------H-HHHcCCEEEeCCCCEEEEcc
Confidence 000 0 00112222221 11111
Q ss_pred -----------------CCe---EE--EcCCcEecccEEEEccCCCCCCCCcccc-c--cccccCCCCcCCCCCCCCCCC
Q 013943 330 -----------------RYA---VE--FVNGRCENFDAIILATGYRSNVPSWLKE-S--EMFSRKDGLPRRPFPNGWKGE 384 (433)
Q Consensus 330 -----------------~~~---v~--~~~g~~~~~D~vi~atG~~~~~~~~~~~-~--~l~~~~~g~~~~~~~~~~~~~ 384 (433)
.++ .. ..+++++++|.||+|+|+.|+. .++.. . ++.. ++|.+++| +.++|+.
T Consensus 492 ~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~-~~l~~~~~~~l~~-~~G~i~vd-~~~~Ts~ 568 (604)
T PRK13984 492 NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDY-SYLPEELKSKLEF-VRGRILTN-EYGQTSI 568 (604)
T ss_pred CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCCh-hhhhhhhccCccc-cCCeEEeC-CCCccCC
Confidence 011 00 0123469999999999999998 45442 2 3433 56888888 6788999
Q ss_pred CceEEeeecccc--cccchhhHHHHHHHHHhhhcc
Q 013943 385 SGLYSVGFTKRG--LLGVAMDAKRIAQDIESCWKA 417 (433)
Q Consensus 385 ~~iya~Gd~~~~--~~~a~~~g~~~a~~i~~~l~~ 417 (433)
|+|||+||++.. +..|+.+|+.+|.+|..+|..
T Consensus 569 ~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 569 PWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999975 457899999999999998853
No 74
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.93 E-value=1.6e-25 Score=220.84 Aligned_cols=273 Identities=18% Similarity=0.235 Sum_probs=185.3
Q ss_pred HHHHHHHHc--CCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCC-HHHHHHHH-HHHHHHcCC
Q 013943 47 ATAACLKER--GIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPS-KQQFVDYL-EAYAKRFEI 122 (433)
Q Consensus 47 ~~A~~L~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~~l 122 (433)
++|..|++. ..+|+|||+++.+.-. +. .++. ...+... ..++..+. .+++.+.++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~-------------~~---~l~~-----~~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFA-------------NC---GLPY-----VIGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEE-------------cC---CCCe-----EeccccCCHHHcccCCHHHHHHhcCC
Confidence 368888876 4689999999844210 00 0000 0011111 23333332 345577899
Q ss_pred cceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEE--eCEEEEccCCCCCCccCCccCCCCCCCceeeccCCCCC-
Q 013943 123 RPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYR--CRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKSG- 199 (433)
Q Consensus 123 ~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~d~viiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~~- 199 (433)
+++.+++|++++.++ ..+.+....+ ...+. ||+||+||| ++|..|+++|.+.- .+.......+.
T Consensus 60 ~~~~~~~V~~id~~~--~~v~~~~~~~-------~~~~~~~yd~lIiATG--~~p~~~~i~G~~~~--~v~~~~~~~~~~ 126 (427)
T TIGR03385 60 DVKTNHEVIEVNDER--QTVVVRNNKT-------NETYEESYDYLILSPG--ASPIVPNIEGINLD--IVFTLRNLEDTD 126 (427)
T ss_pred eEEecCEEEEEECCC--CEEEEEECCC-------CCEEecCCCEEEECCC--CCCCCCCCCCcCCC--CEEEECCHHHHH
Confidence 988899999998765 4544443211 13566 999999999 78888888886521 12222111110
Q ss_pred ------CCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCccee-cccccCCcchhhhHHHHhhcchHHHHHHHHH
Q 013943 200 ------EDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVL-PQEMLGKSTFGLSMWLLKWLPMRLVDKLLLV 272 (433)
Q Consensus 200 ------~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~l-p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 272 (433)
....+++++|||+|.+|+|+|..|.+.|.+|+++.+.+ .++ +.. ++...
T Consensus 127 ~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~~~~~~-----------------~~~~~------ 182 (427)
T TIGR03385 127 AIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE-RILNKLF-----------------DEEMN------ 182 (427)
T ss_pred HHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccCcccc-----------------CHHHH------
Confidence 12356899999999999999999999999999999887 221 111 00100
Q ss_pred HHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCe--EEEcCCcEecccEEEE
Q 013943 273 VSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYA--VEFVNGRCENFDAIIL 348 (433)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~--v~~~~g~~~~~D~vi~ 348 (433)
..+.+.+++.+|+++.+ +.+++.++ +.+.+|+++++|.||+
T Consensus 183 -----------------------------------~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~ 227 (427)
T TIGR03385 183 -----------------------------------QIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVIL 227 (427)
T ss_pred -----------------------------------HHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEE
Confidence 11123455667888766 77776554 2667888999999999
Q ss_pred ccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc-------------cccchhhHHHHHHHHHhh
Q 013943 349 ATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-------------LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 349 atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-------------~~~a~~~g~~~a~~i~~~ 414 (433)
|+|+.|+. .++.+.++..+++|++.+| +.++++.|+|||+|||+.. ...|..+|+.+|++|.+.
T Consensus 228 a~G~~p~~-~~l~~~gl~~~~~G~i~vd-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 228 ATGIKPNS-ELAKDSGLKLGETGAIWVN-EKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred CCCccCCH-HHHHhcCcccCCCCCEEEC-CCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 99999998 6777778877778999998 5678899999999999842 336889999999999764
No 75
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.93 E-value=2.2e-24 Score=211.19 Aligned_cols=326 Identities=18% Similarity=0.137 Sum_probs=181.3
Q ss_pred ccCCCCeEEECCChHHHHHHHHHHH--cCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHH
Q 013943 30 CICVPGPVIVGAGPSGLATAACLKE--RGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQ 107 (433)
Q Consensus 30 ~~~~~dVvIIGaG~aGl~~A~~L~~--~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
....++|+|||+||||+++|..|++ .|++|+|||+.+.+||.+++... +.+....
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k 79 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETK 79 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhH
Confidence 3456799999999999999999987 69999999999999887654210 1223345
Q ss_pred HHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCC
Q 013943 108 QFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFG 187 (433)
Q Consensus 108 ~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~ 187 (433)
.+...+.+++...+++++.+..+- . . ++..+ ....||.||+|||+. .++.+++||.+..
T Consensus 80 ~v~~~~~~~~~~~~v~~~~nv~vg-----~---d--vtl~~---------L~~~yDaVIlAtGa~-~~~~l~IpG~d~~- 138 (491)
T PLN02852 80 NVTNQFSRVATDDRVSFFGNVTLG-----R---D--VSLSE---------LRDLYHVVVLAYGAE-SDRRLGIPGEDLP- 138 (491)
T ss_pred HHHHHHHHHHHHCCeEEEcCEEEC-----c---c--ccHHH---------HhhhCCEEEEecCCC-CCCCCCCCCCCCC-
Confidence 556666676777777766665441 1 1 33332 234699999999952 2355678886531
Q ss_pred CceeeccCC----------CC--CCCCCCCeEEEECCCCcHHHHHHHHhcc--------------------C-CCcEEEE
Q 013943 188 GDIRHTSLY----------KS--GEDFRGKRVLVVGCGNSGMEVCLDLCNH--------------------D-AMPSLVV 234 (433)
Q Consensus 188 ~~~~~~~~~----------~~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------------g-~~Vtl~~ 234 (433)
+ ++...++ .. .....+++|+|||+|++|+|+|..|.+. + .+|+++.
T Consensus 139 g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~ 217 (491)
T PLN02852 139 G-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVG 217 (491)
T ss_pred C-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEE
Confidence 1 1211111 00 0123578999999999999999998874 4 4799999
Q ss_pred ecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhh--ccccccCCCCCCCCcccccc-cCCCccccCchhh
Q 013943 235 RDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLML--GDTARFGLDRPLLGPLQLKN-LSGKTPVLDAGTL 311 (433)
Q Consensus 235 r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 311 (433)
|+...-.+... .++...+ .++.. +..... ..+.. .+.......++.....++.. .....+...
T Consensus 218 RRg~~~~~ft~-----~Elrel~--~l~~~--~~~~~~-~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~---- 283 (491)
T PLN02852 218 RRGPVQAACTA-----KELRELL--GLKNV--RVRIKE-ADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAP---- 283 (491)
T ss_pred cCChHhCCCCH-----HHHHHHh--ccCCC--ceeech-hhhccccchhhhhccchhhHHHHHHHHHHHhhccccc----
Confidence 99832211100 0000000 00000 000000 00000 00000000000000000000 000000000
Q ss_pred hhhhcCCeEEecC--ceEEeC-----C---eEEE-----------------cCCc--EecccEEEEccCCC--CCCCCc-
Q 013943 312 AKIKSGHIRVFPG--IKRLKR-----Y---AVEF-----------------VNGR--CENFDAIILATGYR--SNVPSW- 359 (433)
Q Consensus 312 ~~~~~~~v~~~~~--v~~~~~-----~---~v~~-----------------~~g~--~~~~D~vi~atG~~--~~~~~~- 359 (433)
.-...+|.++.. ..++.. + ++.+ .+|+ +++||.||.|+|+. |.. .+
T Consensus 284 -~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~-~l~ 361 (491)
T PLN02852 284 -SGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVD-GLP 361 (491)
T ss_pred -CCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCC-CCc
Confidence 000012332221 222210 0 1111 1233 48999999999998 433 33
Q ss_pred cc-cccccccCCCCcCCCCCCCCCCCCceEEeeecccc----cccchhhHHHHHHHHHhhhcc
Q 013943 360 LK-ESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG----LLGVAMDAKRIAQDIESCWKA 417 (433)
Q Consensus 360 ~~-~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~----~~~a~~~g~~~a~~i~~~l~~ 417 (433)
+. ..++..|++|++.++ +...|+.||||++||+..+ +..++.+|+.+|++|..++..
T Consensus 362 f~~~~gv~~n~~G~V~~d-~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 362 FDHKRGVVPNVHGRVLSS-ASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred cccCcCeeECCCceEEeC-CCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 32 335666788999887 4567899999999999975 447899999999999998765
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=5.6e-25 Score=223.39 Aligned_cols=277 Identities=19% Similarity=0.228 Sum_probs=182.2
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
..-++|+|||+||+|+++|..|++.|++|+++|+.+.+||.+... ++ .+....++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip---------~~~~~~~~~ 190 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------IP---------AYRLPREVL 190 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CC---------CccCCHHHH
Confidence 345789999999999999999999999999999999999876431 11 111223444
Q ss_pred HHHHHHHHHcCCcceecceE-EEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCc
Q 013943 111 DYLEAYAKRFEIRPRFNETV-SQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGD 189 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v-~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~ 189 (433)
+.-.+.+.+.++++++++.+ ..+.. .. ....||.||+|||.. .+....+++... .+.
T Consensus 191 ~~~l~~~~~~Gv~~~~~~~~~~~~~~-----------~~---------~~~~~D~Vi~AtG~~-~~~~~~i~g~~~-~gv 248 (564)
T PRK12771 191 DAEIQRILDLGVEVRLGVRVGEDITL-----------EQ---------LEGEFDAVFVAIGAQ-LGKRLPIPGEDA-AGV 248 (564)
T ss_pred HHHHHHHHHCCCEEEeCCEECCcCCH-----------HH---------HHhhCCEEEEeeCCC-CCCcCCCCCCcc-CCc
Confidence 54455667788887777544 21111 00 112489999999953 223335666432 222
Q ss_pred eeec----cCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccC-CCcEEEEecCcceecccccCCcchhhhHHHHhhcchH
Q 013943 190 IRHT----SLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHD-AMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMR 264 (433)
Q Consensus 190 ~~~~----~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g-~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~ 264 (433)
.... ..........+++++|||+|.+|+|++..+.+.+ .+|++++|.+...++.... .
T Consensus 249 ~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~---------~-------- 311 (564)
T PRK12771 249 LDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDE---------E-------- 311 (564)
T ss_pred EEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHH---------H--------
Confidence 1111 1111113345889999999999999999999888 6799998887322221100 0
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCe----------
Q 013943 265 LVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYA---------- 332 (433)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~---------- 332 (433)
.+...+.+|+++.. +.++..+.
T Consensus 312 ----------------------------------------------~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~ 345 (564)
T PRK12771 312 ----------------------------------------------IEEALREGVEINWLRTPVEIEGDENGATGLRVIT 345 (564)
T ss_pred ----------------------------------------------HHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEE
Confidence 00111223333332 33332110
Q ss_pred EEE----c-------CC--cEecccEEEEccCCCCCCCCcccc-ccccccCCCCcCCCCCCCCCCCCceEEeeecccc--
Q 013943 333 VEF----V-------NG--RCENFDAIILATGYRSNVPSWLKE-SEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-- 396 (433)
Q Consensus 333 v~~----~-------~g--~~~~~D~vi~atG~~~~~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-- 396 (433)
+.. . +| .++++|.||+|+|+.|+. .++.+ .++. +++|++.+|..++.|+.|+||++||+..+
T Consensus 346 ~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~-~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~ 423 (564)
T PRK12771 346 VEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS-AGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR 423 (564)
T ss_pred EEecccCCCCCeeecCCceEEEECCEEEECcCCCCch-hhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCch
Confidence 110 0 22 369999999999999987 57765 4666 67899999955788999999999999864
Q ss_pred -cccchhhHHHHHHHHHhhhccC
Q 013943 397 -LLGVAMDAKRIAQDIESCWKAK 418 (433)
Q Consensus 397 -~~~a~~~g~~~a~~i~~~l~~~ 418 (433)
+..|+.+|+.+|.+|.+.|...
T Consensus 424 ~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 424 TVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 4579999999999999998753
No 77
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.92 E-value=8e-25 Score=200.92 Aligned_cols=300 Identities=17% Similarity=0.149 Sum_probs=199.3
Q ss_pred CCccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHH
Q 013943 28 PRCICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQ 107 (433)
Q Consensus 28 ~~~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
+...+.++|||+|.|++|++++..|-..-++|+++++.+++--+|.. |....+-+...
T Consensus 50 ~~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL----------------------pS~~vGTve~r 107 (491)
T KOG2495|consen 50 KNGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL----------------------PSTTVGTVELR 107 (491)
T ss_pred CCCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeecc----------------------CCccccceeeh
Confidence 34467799999999999999999999889999999998844211111 11112333445
Q ss_pred HHHHHHHHHHHHcCCcc-eecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCC
Q 013943 108 QFVDYLEAYAKRFEIRP-RFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEF 186 (433)
Q Consensus 108 ~~~~~l~~~~~~~~l~~-~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~ 186 (433)
.+.+-.....+....++ .+..+.+.++++. +.+.+.... ......+..+.||+||+|+| .+++.+.+||..++
T Consensus 108 SIvEPIr~i~r~k~~~~~y~eAec~~iDp~~--k~V~~~s~t--~~~~~~e~~i~YDyLViA~G--A~~~TFgipGV~e~ 181 (491)
T KOG2495|consen 108 SIVEPIRAIARKKNGEVKYLEAECTKIDPDN--KKVHCRSLT--ADSSDKEFVIGYDYLVIAVG--AEPNTFGIPGVEEN 181 (491)
T ss_pred hhhhhHHHHhhccCCCceEEecccEeecccc--cEEEEeeec--cCCCcceeeecccEEEEecc--CCCCCCCCCchhhc
Confidence 56677777666664443 4455677777766 443333322 12234567899999999999 88888889987764
Q ss_pred CCceeec-------------------cCCCCCCCCCCCeEEEECCCCcHHHHHHHHhcc--------------CCCcEEE
Q 013943 187 GGDIRHT-------------------SLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNH--------------DAMPSLV 233 (433)
Q Consensus 187 ~~~~~~~-------------------~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------g~~Vtl~ 233 (433)
..+.-.. ....+++..+--+++|||||++|+|+|.+|++. --+||++
T Consensus 182 ~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLi 261 (491)
T KOG2495|consen 182 AHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLI 261 (491)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEee
Confidence 3321111 011111222334899999999999999999873 1257777
Q ss_pred EecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhh
Q 013943 234 VRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAK 313 (433)
Q Consensus 234 ~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (433)
.-.+ .+|+.+ .+.+.+ ...+.
T Consensus 262 EA~d-~iL~mF-----------------dkrl~~-----------------------------------------yae~~ 282 (491)
T KOG2495|consen 262 EAAD-HILNMF-----------------DKRLVE-----------------------------------------YAENQ 282 (491)
T ss_pred ccch-hHHHHH-----------------HHHHHH-----------------------------------------HHHHH
Confidence 5555 333321 111111 11244
Q ss_pred hhcCCeEEecC--ceEEeCCeEEEcCC----cEecccEEEEccCCCCCCCCccccccccccCCC--CcCCCCCCCCCCCC
Q 013943 314 IKSGHIRVFPG--IKRLKRYAVEFVNG----RCENFDAIILATGYRSNVPSWLKESEMFSRKDG--LPRRPFPNGWKGES 385 (433)
Q Consensus 314 ~~~~~v~~~~~--v~~~~~~~v~~~~g----~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g--~~~~~~~~~~~~~~ 385 (433)
+.+-+|++..+ |..++++.+..+.+ +++++-+++|+||..+.. +.+++-...++.| .+.+|.-++..+.+
T Consensus 283 f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp--~~k~lm~~i~e~~rr~L~vDE~LrV~G~~ 360 (491)
T KOG2495|consen 283 FVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP--VIKDLMKQIDEQGRRGLAVDEWLRVKGVK 360 (491)
T ss_pred hhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch--hhhhHhhcCCccCceeeeeeceeeccCcC
Confidence 55678888887 88888888777654 679999999999999985 4555422223333 56677456778999
Q ss_pred ceEEeeeccc------ccccchhhHHHHHHHHHhhhc
Q 013943 386 GLYSVGFTKR------GLLGVAMDAKRIAQDIESCWK 416 (433)
Q Consensus 386 ~iya~Gd~~~------~~~~a~~~g~~~a~~i~~~l~ 416 (433)
||||+|||+. ++..|..+|..+|+++..-.+
T Consensus 361 nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k 397 (491)
T KOG2495|consen 361 NVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGK 397 (491)
T ss_pred ceEEeccccccccCccHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999993 244789999999999875443
No 78
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=2.6e-23 Score=190.78 Aligned_cols=351 Identities=25% Similarity=0.290 Sum_probs=214.9
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCCcccccc-cCcee-----------eecCCceeecCCCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERG-IPSILLERSNCIASLWQLKT-YDRLR-----------LHLPKQFCELPLMGFP 97 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g-~~v~iie~~~~~gg~w~~~~-~~~~~-----------~~~~~~~~~~~~~~~~ 97 (433)
...+|++.||.||+-|.+|..|.+.+ .+++++|+.+.+ .|...+ .++.. +..|.+.+.|-++-..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 35799999999999999999999976 789999998866 576643 11111 1122222222111100
Q ss_pred --------CCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEE--EEEeecCcCCCceeEEEEeCEEEE
Q 013943 98 --------SEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWR--VKTTVGGQKCGVEEMEYRCRWLVV 167 (433)
Q Consensus 98 --------~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~--v~~~~g~~~~~~~~~~~~~d~vii 167 (433)
..-..++.+.++.+|++|.+.++ -.++++++|+.|.........+ +.+.++ ..++|+.||+
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~--------~~y~ar~lVl 151 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANG--------TVYRARNLVL 151 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCC--------cEEEeeeEEE
Confidence 01123579999999999999998 6789999999663222212222 444443 5999999999
Q ss_pred ccCCCCCCccCCc-cCCCCCCCceeeccCCCCC-CCCCCCe-EEEECCCCcHHHHHHHHhcc----CCCcEEEEecCcce
Q 013943 168 ATGENAEAVVPEI-EGSDEFGGDIRHTSLYKSG-EDFRGKR-VLVVGCGNSGMEVCLDLCNH----DAMPSLVVRDTVHV 240 (433)
Q Consensus 168 AtG~~~~p~~p~~-~g~~~~~~~~~~~~~~~~~-~~~~~~~-v~VvG~G~~a~e~a~~l~~~----g~~Vtl~~r~~~~~ 240 (433)
++| .+|.+|+. .... .+.++|++++.+. .....++ |.|||+|+||.|+...|... ..++.|+.|+. -.
T Consensus 152 g~G--~~P~IP~~f~~l~--~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~-gf 226 (436)
T COG3486 152 GVG--TQPYIPPCFRSLI--GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS-GF 226 (436)
T ss_pred ccC--CCcCCChHHhCcC--ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC-CC
Confidence 999 99999953 2221 2478999887643 3344444 99999999999999999865 34699999999 55
Q ss_pred ecccccCCcchhhhHHHHhh------cchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhh-
Q 013943 241 LPQEMLGKSTFGLSMWLLKW------LPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAK- 313 (433)
Q Consensus 241 lp~~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 313 (433)
+|.+.... .+..++..+ +++.-++.+..... +.+ .++ ......++.+.
T Consensus 227 ~p~d~Skf---~~e~F~P~y~dyfy~l~~~~r~~ll~~~~-~~Y-----kgI----------------~~~ti~~Iy~~l 281 (436)
T COG3486 227 LPMDYSKF---GLEYFSPEYTDYFYGLPPEARDELLRKQR-LLY-----KGI----------------SFDTIEEIYDLL 281 (436)
T ss_pred Cccccchh---hhhhcCchhHHHHhcCCHHHHHHHHhhcC-ccc-----ccc----------------CHHHHHHHHHHH
Confidence 56654322 111111111 33333333332211 000 000 00011111111
Q ss_pred ----hh--cCCeEEecC--ceEEeCCe---EEE-------cCCcEecccEEEEccCCCCCCCCccccc--cccccCCCCc
Q 013943 314 ----IK--SGHIRVFPG--IKRLKRYA---VEF-------VNGRCENFDAIILATGYRSNVPSWLKES--EMFSRKDGLP 373 (433)
Q Consensus 314 ----~~--~~~v~~~~~--v~~~~~~~---v~~-------~~g~~~~~D~vi~atG~~~~~~~~~~~~--~l~~~~~g~~ 373 (433)
+. +.++.+.+. +.++...+ +.+ .+.+++++|+||+||||....+.|+..+ .+..+++|..
T Consensus 282 Y~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l 361 (436)
T COG3486 282 YEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRL 361 (436)
T ss_pred HHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCe
Confidence 11 235666654 55555433 333 2335689999999999998887888887 4566788888
Q ss_pred CCCCCCC--CC--CCCceEEeeeccc-------ccccchhhHHHHHHHHHhhhccCCchh
Q 013943 374 RRPFPNG--WK--GESGLYSVGFTKR-------GLLGVAMDAKRIAQDIESCWKAKAPFA 422 (433)
Q Consensus 374 ~~~~~~~--~~--~~~~iya~Gd~~~-------~~~~a~~~g~~~a~~i~~~l~~~~~~~ 422 (433)
.++.++. +. ....||+.|-.-. ....+...+..|++.+.+..+-..+.+
T Consensus 362 ~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~~~~~~~ 421 (436)
T COG3486 362 VIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREKYPVPAR 421 (436)
T ss_pred EecCceeeecCCCCcceEEEecccccccccCCccchHHHHHHHHHHHHHhCcCCCCCccc
Confidence 8775443 32 2347999885543 234556666677777776665544433
No 79
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.92 E-value=1.6e-24 Score=211.83 Aligned_cols=287 Identities=20% Similarity=0.179 Sum_probs=206.1
Q ss_pred CCeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKER---GIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
..++|||.|.+|..+..++.+. -+.|+++...+++ .|+.+.+.. .+++-.+.+++.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~-------nY~Ri~Ls~--------------vl~~~~~~edi~ 62 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP-------NYNRILLSS--------------VLAGEKTAEDIS 62 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc-------cccceeecc--------------ccCCCccHHHHh
Confidence 5799999999999999999984 4689999877744 244333321 222223556666
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
-.-.++.++++++++.+.+|+.++.... . |+++.| ..+.||.||+||| |.|++|++||.+.+.-..
T Consensus 63 l~~~dwy~~~~i~L~~~~~v~~idr~~k--~--V~t~~g--------~~~~YDkLilATG--S~pfi~PiPG~~~~~v~~ 128 (793)
T COG1251 63 LNRNDWYEENGITLYTGEKVIQIDRANK--V--VTTDAG--------RTVSYDKLIIATG--SYPFILPIPGSDLPGVFV 128 (793)
T ss_pred ccchhhHHHcCcEEEcCCeeEEeccCcc--e--EEccCC--------cEeecceeEEecC--ccccccCCCCCCCCCeeE
Confidence 6666788899999999999999998773 3 777777 8999999999999 999999999987643222
Q ss_pred eeccCCCCC---CCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHH
Q 013943 191 RHTSLYKSG---EDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVD 267 (433)
Q Consensus 191 ~~~~~~~~~---~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (433)
+.+-..... .....++.+|||+|..|+|+|..|.+.|-++++++-.+ +.+-+... +.
T Consensus 129 ~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD----------------~~--- 188 (793)
T COG1251 129 YRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLD----------------RT--- 188 (793)
T ss_pred EecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhh----------------hH---
Confidence 222111111 12234568999999999999999999999999997666 33222111 00
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEE----eCCeEEEcCCcEe
Q 013943 268 KLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRL----KRYAVEFVNGRCE 341 (433)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~----~~~~v~~~~g~~~ 341 (433)
. ..-..+.+.+.+++++.+ ..++ ...++.++||..+
T Consensus 189 -a-------------------------------------g~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i 230 (793)
T COG1251 189 -A-------------------------------------GRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEI 230 (793)
T ss_pred -H-------------------------------------HHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcc
Confidence 0 000113344445555554 2222 1245889999999
Q ss_pred cccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc-------cccchhhHHHHHHHHHhh
Q 013943 342 NFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG-------LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 342 ~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~-------~~~a~~~g~~~a~~i~~~ 414 (433)
++|.||+|+|++||. .+..+.++.. +.|. ++| ++++|+.|+|||+|.|+.. +..+..+++.+|.++...
T Consensus 231 ~ad~VV~a~GIrPn~-ela~~aGlav-nrGI-vvn-d~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~ 306 (793)
T COG1251 231 PADLVVMAVGIRPND-ELAKEAGLAV-NRGI-VVN-DYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGG 306 (793)
T ss_pred cceeEEEeccccccc-HhHHhcCcCc-CCCe-eec-ccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccC
Confidence 999999999999999 7888889988 4465 444 4899999999999999953 446788999999999876
Q ss_pred hcc
Q 013943 415 WKA 417 (433)
Q Consensus 415 l~~ 417 (433)
..+
T Consensus 307 ~~~ 309 (793)
T COG1251 307 EAE 309 (793)
T ss_pred ccc
Confidence 554
No 80
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.92 E-value=2.1e-23 Score=223.19 Aligned_cols=286 Identities=16% Similarity=0.125 Sum_probs=187.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
..+||+||||||||+++|..+++.|++|+|+|+.+.+||.+.... . ..++ ....++..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---------~------------~~~g-~~~~~~~~ 219 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---------E------------TIDG-KPAADWAA 219 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---------c------------ccCC-ccHHHHHH
Confidence 358999999999999999999999999999999999998765421 0 0001 23344544
Q ss_pred HHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCc------CCCceeEEEEeCEEEEccCCCCCCccCCccCCC
Q 013943 112 YLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQ------KCGVEEMEYRCRWLVVATGENAEAVVPEIEGSD 184 (433)
Q Consensus 112 ~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~------~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~ 184 (433)
.+.+.+... +++++.+++|..+.... ....+....... ........+.||.||+||| +.++.|+++|.+
T Consensus 220 ~~~~~l~~~~~v~v~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATG--a~~r~~pipG~~ 295 (985)
T TIGR01372 220 ATVAELTAMPEVTLLPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATG--AHERPLVFANND 295 (985)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEecCC--eEEEEEEeeeccccccCCccccceEEEEcCEEEEcCC--CCCcCCCCCCCC
Confidence 455555555 48888898888875422 111111000000 0011123789999999999 778888888865
Q ss_pred CCCCceeec--cCCCCC-CCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecccccCCcchhhhHHHHhh
Q 013943 185 EFGGDIRHT--SLYKSG-EDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKW 260 (433)
Q Consensus 185 ~~~~~~~~~--~~~~~~-~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~ 260 (433)
. .+..... ..+... ....+++++|||+|.+|+|+|..|.+.|. .|+++.+.+ ...+
T Consensus 296 ~-pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~-~~~~------------------ 355 (985)
T TIGR01372 296 R-PGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA-DVSP------------------ 355 (985)
T ss_pred C-CCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc-chhH------------------
Confidence 3 2211110 011111 22467899999999999999999999995 467775554 1100
Q ss_pred cchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC----eEE
Q 013943 261 LPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY----AVE 334 (433)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~ 334 (433)
.+.+.+++.+|+++.+ +.++.++ +|+
T Consensus 356 ------------------------------------------------~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~ 387 (985)
T TIGR01372 356 ------------------------------------------------EARAEARELGIEVLTGHVVAATEGGKRVSGVA 387 (985)
T ss_pred ------------------------------------------------HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEE
Confidence 0113355567888876 6666544 345
Q ss_pred Ec----CCcEecccEEEEccCCCCCCCCcccccccc--ccCC-CCcCCCCCCCCCCCCceEEeeecccc--cccchhhHH
Q 013943 335 FV----NGRCENFDAIILATGYRSNVPSWLKESEMF--SRKD-GLPRRPFPNGWKGESGLYSVGFTKRG--LLGVAMDAK 405 (433)
Q Consensus 335 ~~----~g~~~~~D~vi~atG~~~~~~~~~~~~~l~--~~~~-g~~~~~~~~~~~~~~~iya~Gd~~~~--~~~a~~~g~ 405 (433)
+. +++++++|.|++++|+.||. .+....+.. .++. +..+. .++.|+||++||++.. +..|..+|.
T Consensus 388 l~~~~g~~~~i~~D~V~va~G~~Pnt-~L~~~lg~~~~~~~~~~~~~~-----~t~v~gVyaaGD~~g~~~~~~A~~eG~ 461 (985)
T TIGR01372 388 VARNGGAGQRLEADALAVSGGWTPVV-HLFSQRGGKLAWDAAIAAFLP-----GDAVQGCILAGAANGLFGLAAALADGA 461 (985)
T ss_pred EEecCCceEEEECCEEEEcCCcCchh-HHHHhcCCCeeeccccCceec-----CCCCCCeEEeeccCCccCHHHHHHHHH
Confidence 54 45679999999999999998 677666432 2211 11111 2568999999999964 557999999
Q ss_pred HHHHHHHhhhcc
Q 013943 406 RIAQDIESCWKA 417 (433)
Q Consensus 406 ~~a~~i~~~l~~ 417 (433)
.+|..|...+..
T Consensus 462 ~Aa~~i~~~lg~ 473 (985)
T TIGR01372 462 AAGAAAARAAGF 473 (985)
T ss_pred HHHHHHHHHcCC
Confidence 999999877754
No 81
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.2e-23 Score=184.40 Aligned_cols=314 Identities=16% Similarity=0.158 Sum_probs=191.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecC--CCCCCccccc-------ccCceeeecCC----ceeecCCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERS--NCIASLWQLK-------TYDRLRLHLPK----QFCELPLMGFPS 98 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~--~~~gg~w~~~-------~~~~~~~~~~~----~~~~~~~~~~~~ 98 (433)
--||++|||||.+||+||.+.+..|.+|.++|-- ...|..|... +.|.-.++... ...+...+.|..
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~ 97 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNV 97 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 5699999999999999999999999999988742 2356666552 22221111110 000111122211
Q ss_pred CC-CCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCe----EEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 99 EF-PTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRF----WRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 99 ~~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~----~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
.. .--+....+.+..+.-++..+.-.+..-+-..+.+...... .++...+. .++.+.++++.++|||| .
T Consensus 98 ~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~----~gk~~~~ta~~fvIatG--~ 171 (503)
T KOG4716|consen 98 DEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNK----KGKERFLTAENFVIATG--L 171 (503)
T ss_pred ccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecC----CCceEEeecceEEEEec--C
Confidence 11 11234555666666655544322111111112222222111 23433322 33568899999999999 9
Q ss_pred CCccCCccCCCCCCCceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhh
Q 013943 174 EAVVPEIEGSDEFGGDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGL 253 (433)
Q Consensus 174 ~p~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~ 253 (433)
+|+.|.+||..++ .+.+.++. ...+.+.+.+|||+|.+|+|+|..|+..|-+||+..|+= +|..++.
T Consensus 172 RPrYp~IpG~~Ey---~ITSDDlF-sl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI--~LrGFDq------- 238 (503)
T KOG4716|consen 172 RPRYPDIPGAKEY---GITSDDLF-SLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI--LLRGFDQ------- 238 (503)
T ss_pred CCCCCCCCCceee---eecccccc-cccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEe--ecccccH-------
Confidence 9999999997653 24443333 344566799999999999999999999999999998874 2221111
Q ss_pred hHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC-----ceEE
Q 013943 254 SMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG-----IKRL 328 (433)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----v~~~ 328 (433)
.+.+.++. .+.. .+|++... |+.+
T Consensus 239 ----------dmae~v~~--------~m~~---------------------------------~Gikf~~~~vp~~Veq~ 267 (503)
T KOG4716|consen 239 ----------DMAELVAE--------HMEE---------------------------------RGIKFLRKTVPERVEQI 267 (503)
T ss_pred ----------HHHHHHHH--------HHHH---------------------------------hCCceeecccceeeeec
Confidence 11111111 2222 23332221 3333
Q ss_pred eCCeE--EE-----cCCcEecccEEEEccCCCCCCCCccccc-ccccc-CCCCcCCCCCCCCCCCCceEEeeecccc---
Q 013943 329 KRYAV--EF-----VNGRCENFDAIILATGYRSNVPSWLKES-EMFSR-KDGLPRRPFPNGWKGESGLYSVGFTKRG--- 396 (433)
Q Consensus 329 ~~~~v--~~-----~~g~~~~~D~vi~atG~~~~~~~~~~~~-~l~~~-~~g~~~~~~~~~~~~~~~iya~Gd~~~~--- 396 (433)
+++.+ .. .++-+-++|.|+||.|..+....+..+. |...| ..|.+.+| +...+++|.|||+||.-..
T Consensus 268 ~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~-~~e~t~vp~vyAvGDIl~~kpE 346 (503)
T KOG4716|consen 268 DDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVD-DEEATNVPYVYAVGDILEDKPE 346 (503)
T ss_pred cCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccC-hHHhcCCCceEEecceecCCcc
Confidence 33331 11 1223357999999999999886554443 66654 56778887 6888999999999998854
Q ss_pred -cccchhhHHHHHHHHHhhhc
Q 013943 397 -LLGVAMDAKRIAQDIESCWK 416 (433)
Q Consensus 397 -~~~a~~~g~~~a~~i~~~l~ 416 (433)
...|...|+.+|+.+...-.
T Consensus 347 LTPvAIqsGrlLa~Rlf~gs~ 367 (503)
T KOG4716|consen 347 LTPVAIQSGRLLARRLFAGST 367 (503)
T ss_pred cchhhhhhchHHHHHHhcCcc
Confidence 55799999999999976433
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.86 E-value=2.5e-21 Score=194.07 Aligned_cols=325 Identities=19% Similarity=0.203 Sum_probs=198.3
Q ss_pred HHHhhccCCCCc-cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCC
Q 013943 19 FIEKMNKSSPRC-ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFP 97 (433)
Q Consensus 19 ~~~~~~~~~~~~-~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (433)
|++.--+|-++. ..-++|.|||.||+|++||-.|-+.|+.|+++|+.+..||...+. ++..
T Consensus 1770 f~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg---------------ipnm--- 1831 (2142)
T KOG0399|consen 1770 FEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG---------------IPNM--- 1831 (2142)
T ss_pred HHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec---------------CCcc---
Confidence 344333444444 233789999999999999999999999999999999999986552 2221
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 98 SEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
.....+++.-.++..+.|+++.+++++-.- +..+. -.-..|.||+|+|. ..|+-
T Consensus 1832 ------kldk~vv~rrv~ll~~egi~f~tn~eigk~----------vs~d~---------l~~~~daiv~a~gs-t~prd 1885 (2142)
T KOG0399|consen 1832 ------KLDKFVVQRRVDLLEQEGIRFVTNTEIGKH----------VSLDE---------LKKENDAIVLATGS-TTPRD 1885 (2142)
T ss_pred ------chhHHHHHHHHHHHHhhCceEEeecccccc----------ccHHH---------HhhccCeEEEEeCC-CCCcC
Confidence 222335666667777889998888776211 21111 23357999999996 46666
Q ss_pred CCccCCCCCCCc-----eeecc--------CCCCCCCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecc
Q 013943 178 PEIEGSDEFGGD-----IRHTS--------LYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQ 243 (433)
Q Consensus 178 p~~~g~~~~~~~-----~~~~~--------~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~ 243 (433)
.++||-+. .|. .+|.. ........++|+|+|||||.+|-||...-.+.|+ +|.-+ .+||.
T Consensus 1886 lpv~grd~-kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~-----ellp~ 1959 (2142)
T KOG0399|consen 1886 LPVPGRDL-KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNF-----ELLPQ 1959 (2142)
T ss_pred CCCCCccc-cccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecce-----eecCC
Confidence 67777543 111 11111 0011234578999999999999999988888876 44433 23332
Q ss_pred cccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEec
Q 013943 244 EMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFP 323 (433)
Q Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 323 (433)
... .....++.+.|=.---.+.-..+.+..+-.+...+.+. ...+.. -.+++|+-..
T Consensus 1960 pp~---~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vl-------------------tk~f~~-~~~g~v~gl~ 2016 (2142)
T KOG0399|consen 1960 PPP---ERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVL-------------------TKRFIG-DDNGNVTGLE 2016 (2142)
T ss_pred CCc---ccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeee-------------------eeeeec-cCCCceeeEE
Confidence 111 01111111111000001112222333333333332221 111111 1113332111
Q ss_pred C--ceEEe-CCe-EEE---c-CCcEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeeccc
Q 013943 324 G--IKRLK-RYA-VEF---V-NGRCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKR 395 (433)
Q Consensus 324 ~--v~~~~-~~~-v~~---~-~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~ 395 (433)
- |+.-. +.+ +.+ . +.+.++||+||+|.||..+.+....++++..|.++.+.+......++++++||+|||.+
T Consensus 2017 ~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrr 2096 (2142)
T KOG0399|consen 2017 TVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRR 2096 (2142)
T ss_pred EEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccC
Confidence 1 11111 112 222 2 34568999999999999887677888899888899998887778899999999999998
Q ss_pred c---cccchhhHHHHHHHHHhhhc
Q 013943 396 G---LLGVAMDAKRIAQDIESCWK 416 (433)
Q Consensus 396 ~---~~~a~~~g~~~a~~i~~~l~ 416 (433)
+ +.+|..+|+++|.++-....
T Consensus 2097 gqslvvwai~egrq~a~~vd~~~~ 2120 (2142)
T KOG0399|consen 2097 GQSLVVWAIQEGRQAARQVDELMG 2120 (2142)
T ss_pred CceEEEEEehhhhHHHHHHHHHhC
Confidence 6 66899999999999976443
No 83
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=176.52 Aligned_cols=295 Identities=19% Similarity=0.242 Sum_probs=184.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+||+|+++|..|.+.|++|+++|+.+..||...+. .|.+....++.+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG------------------------IP~~kl~k~i~d~~ 179 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG------------------------IPDFKLPKDILDRR 179 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec------------------------CchhhccchHHHHH
Confidence 899999999999999999999999999999999999876552 23334556788888
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCceeec
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHT 193 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~~~ 193 (433)
.+++++.++++++++++-. . ++.+. -.-.+|.|++|+|. ..|+..+++|.+. .+ +...
T Consensus 180 i~~l~~~Gv~~~~~~~vG~--------~--it~~~---------L~~e~Dav~l~~G~-~~~~~l~i~g~d~-~g-v~~A 237 (457)
T COG0493 180 LELLERSGVEFKLNVRVGR--------D--ITLEE---------LLKEYDAVFLATGA-GKPRPLDIPGEDA-KG-VAFA 237 (457)
T ss_pred HHHHHHcCeEEEEcceECC--------c--CCHHH---------HHHhhCEEEEeccc-cCCCCCCCCCcCC-Cc-chHH
Confidence 9999999999998887721 1 22222 22345999999996 5666667777652 11 1111
Q ss_pred cCC--------------CCCCCCCCCeEEEECCCCcHHHHHHHHhccCC-CcEEEEecCcceecccccCCcchhhhHHHH
Q 013943 194 SLY--------------KSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDTVHVLPQEMLGKSTFGLSMWLL 258 (433)
Q Consensus 194 ~~~--------------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~ 258 (433)
.++ .......+++|+|||+|.+++|++....+.|. +|+.+.+.... ...+.. ..
T Consensus 238 ~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~----~~~~~~----~~--- 306 (457)
T COG0493 238 LDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRD----DETNEW----PT--- 306 (457)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccccc----ccCCcc----cc---
Confidence 100 11122345999999999999999999999987 78888644311 000000 00
Q ss_pred hhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhh--hcCCeEEecC--ceEEe--CC-
Q 013943 259 KWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKI--KSGHIRVFPG--IKRLK--RY- 331 (433)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~--v~~~~--~~- 331 (433)
.+... ........++. ......-.+.+ .+++|.-... +.... .+
T Consensus 307 --~~~~~-----------~~~~a~eeg~~----------------~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~ 357 (457)
T COG0493 307 --WAAQL-----------EVRSAGEEGVE----------------RLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGW 357 (457)
T ss_pred --cchhh-----------hhhhhhhcCCc----------------ccccCCceeEeecCCCcEeeeecccccccCccccc
Confidence 00000 00000011100 00000001111 1233332111 11110 01
Q ss_pred ----eEEEc-CCcEecccEEEEccCCCCCCCCccc-cccccccCCCCcCCCCCCCCCCCCceEEeeecccc---cccchh
Q 013943 332 ----AVEFV-NGRCENFDAIILATGYRSNVPSWLK-ESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG---LLGVAM 402 (433)
Q Consensus 332 ----~v~~~-~g~~~~~D~vi~atG~~~~~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~---~~~a~~ 402 (433)
.+... +...+++|.|+.|+|+.++...+.. ..++..+..|.+.++....+|+.|++|+.||+.++ +..|+.
T Consensus 358 ~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~ 437 (457)
T COG0493 358 GRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIA 437 (457)
T ss_pred ccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHh
Confidence 11121 2245899999999999998644322 22555578899999843448999999999999984 668999
Q ss_pred hHHHHHHHHHhh
Q 013943 403 DAKRIAQDIESC 414 (433)
Q Consensus 403 ~g~~~a~~i~~~ 414 (433)
+|+.+|+.|..+
T Consensus 438 eGr~aak~i~~~ 449 (457)
T COG0493 438 EGREAAKAIDKE 449 (457)
T ss_pred hchHHHHhhhHH
Confidence 999999999844
No 84
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.77 E-value=7e-18 Score=166.08 Aligned_cols=277 Identities=19% Similarity=0.184 Sum_probs=176.0
Q ss_pred eEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCC-CCCCHHHHHHH
Q 013943 36 PVIVGAGPSGLATAACLKERG--IPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFP-TYPSKQQFVDY 112 (433)
Q Consensus 36 VvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 112 (433)
++|||+|++|+.+|..|.+.. .+++++......... ...+.. ... ......++...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~-----~~~~~~----------------~~~~~~~~~~~~~~~ 59 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYY-----RCPLSL----------------YVGGGIASLEDLRYP 59 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCC-----CCccch----------------HHhcccCCHHHhccc
Confidence 689999999999999998864 588877776533110 000000 000 00111111111
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCceee
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRH 192 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~~ 192 (433)
.... .+.++.++.+++|+.++.... . +.+.+ ..+.||++++||| .++..++ +. ... ....
T Consensus 60 ~~~~-~~~~i~~~~~~~v~~id~~~~--~--v~~~~---------g~~~yd~LvlatG--a~~~~~~--~~-~~~-~~~~ 119 (415)
T COG0446 60 PRFN-RATGIDVRTGTEVTSIDPENK--V--VLLDD---------GEIEYDYLVLATG--ARPRPPP--IS-DWE-GVVT 119 (415)
T ss_pred chhH-HhhCCEEeeCCEEEEecCCCC--E--EEECC---------CcccccEEEEcCC--CcccCCC--cc-ccC-ceEE
Confidence 1112 455788899999999998773 3 55554 2789999999999 7677665 11 111 1111
Q ss_pred ccCCCCCC-----CCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHH
Q 013943 193 TSLYKSGE-----DFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVD 267 (433)
Q Consensus 193 ~~~~~~~~-----~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (433)
.....+.. ....++++|+|+|..|+|+|..+.+.|.+|+++...+ ++++.... +
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~----------------~---- 178 (415)
T COG0446 120 LRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLD----------------P---- 178 (415)
T ss_pred ECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhh----------------H----
Confidence 11111110 1115799999999999999999999999999999888 44442110 0
Q ss_pred HHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCe-------EEEcCC
Q 013943 268 KLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYA-------VEFVNG 338 (433)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~-------v~~~~g 338 (433)
.....+.+.++..+|+++.+ +.+++... +...++
T Consensus 179 -------------------------------------~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 221 (415)
T COG0446 179 -------------------------------------EVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG 221 (415)
T ss_pred -------------------------------------HHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC
Confidence 01111224455566777665 66666542 567788
Q ss_pred cEecccEEEEccCCCCCCCCcccccc-ccccCCCCcCCCCCCCCCC-CCceEEeeecccc-------------cccchhh
Q 013943 339 RCENFDAIILATGYRSNVPSWLKESE-MFSRKDGLPRRPFPNGWKG-ESGLYSVGFTKRG-------------LLGVAMD 403 (433)
Q Consensus 339 ~~~~~D~vi~atG~~~~~~~~~~~~~-l~~~~~g~~~~~~~~~~~~-~~~iya~Gd~~~~-------------~~~a~~~ 403 (433)
..+++|.+++++|..||. .+..+.. .....+|.+.+| ..++++ .++||++||++.. ...+..+
T Consensus 222 ~~~~~d~~~~~~g~~p~~-~l~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~ 299 (415)
T COG0446 222 EEIKADLVIIGPGERPNV-VLANDALPGLALAGGAVLVD-ERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAA 299 (415)
T ss_pred cEEEeeEEEEeecccccH-HHHhhCccceeccCCCEEEc-cccccCCCCCEEeccceEeeecccCCceeeeechhhHhhh
Confidence 899999999999999996 4555553 123377888888 566776 9999999998843 1145566
Q ss_pred HHHHHHHHHh
Q 013943 404 AKRIAQDIES 413 (433)
Q Consensus 404 g~~~a~~i~~ 413 (433)
++.++.++..
T Consensus 300 ~~i~~~~~~~ 309 (415)
T COG0446 300 GRIAAENIAG 309 (415)
T ss_pred hHHHHHHhcc
Confidence 6666666654
No 85
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.76 E-value=2.1e-17 Score=169.97 Aligned_cols=170 Identities=14% Similarity=0.218 Sum_probs=91.4
Q ss_pred CccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc--c-----cccCce-eeecCCceeecCCCCCCCCC
Q 013943 29 RCICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ--L-----KTYDRL-RLHLPKQFCELPLMGFPSEF 100 (433)
Q Consensus 29 ~~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~--~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (433)
+...-++|+|||+||||+++|+.|++.|++|+++|+....|+... . +.+..+ .-..+...-++..+..+..
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R- 457 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVR- 457 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcccc-
Confidence 344678999999999999999999999999999999764433211 0 000000 0000000001111111101
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccee--cceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 101 PTYPSKQQFVDYLEAYAKRFEIRPRF--NETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 101 ~~~~~~~~~~~~l~~~~~~~~l~~~~--~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
-..+..+.+... ...+.++.+ +.++ ..+ ++.++ .....||.|++|||+ ..|+.+
T Consensus 458 ----~~k~~l~~i~~i-l~~g~~v~~~~gv~l-----G~d-----it~ed--------l~~~gyDAV~IATGA-~kpr~L 513 (1028)
T PRK06567 458 ----WDKNNLDILRLI-LERNNNFKYYDGVAL-----DFN-----ITKEQ--------AFDLGFDHIAFCIGA-GQPKVL 513 (1028)
T ss_pred ----chHHHHHHHHHH-HhcCCceEEECCeEE-----Ccc-----CCHHH--------HhhcCCCEEEEeCCC-CCCCCC
Confidence 112223332222 223444433 4332 110 22222 134569999999994 268888
Q ss_pred CccCCCCCCCceeeccCCCC-------------CCCCCCCeEEEECCCCcHHHHHHHHhc
Q 013943 179 EIEGSDEFGGDIRHTSLYKS-------------GEDFRGKRVLVVGCGNSGMEVCLDLCN 225 (433)
Q Consensus 179 ~~~g~~~~~~~~~~~~~~~~-------------~~~~~~~~v~VvG~G~~a~e~a~~l~~ 225 (433)
++||.+. .+ +....++.. .....+++|+|||||++|+|+|.....
T Consensus 514 ~IPGeda-~G-V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr 571 (1028)
T PRK06567 514 DIENFEA-KG-VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLY 571 (1028)
T ss_pred CCCCccC-CC-eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHh
Confidence 8998764 22 222211100 001136799999999999999996654
No 86
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.74 E-value=2e-16 Score=152.76 Aligned_cols=162 Identities=19% Similarity=0.167 Sum_probs=98.9
Q ss_pred CCCCeEEECCChHHHHHHHHHH-HcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLK-ERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~-~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
.-++|+|||+||||+.+|..|+ +.|++|+|||+.+.+||.++...- +..+.-..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa-----------------------Pdh~~~k~v~ 94 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA-----------------------PDHIHVKNTY 94 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC-----------------------CCCccHHHHH
Confidence 4578999999999999999876 569999999999999998776311 1112334555
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCcc---------
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIE--------- 181 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~--------- 181 (433)
..+...+...++++..+.+| ..+ ++.++ -.-.||.||+|+|+. ...+| ++
T Consensus 95 ~~f~~~~~~~~v~f~gnv~V-----G~D-----vt~ee---------L~~~YDAVIlAtGA~-~l~ip-i~~~~~~~~~~ 153 (506)
T PTZ00188 95 KTFDPVFLSPNYRFFGNVHV-----GVD-----LKMEE---------LRNHYNCVIFCCGAS-EVSIP-IGQQDEDKAVS 153 (506)
T ss_pred HHHHHHHhhCCeEEEeeeEe-----cCc-----cCHHH---------HHhcCCEEEEEcCCC-CCCCC-cccccceeeec
Confidence 56655555555554433222 111 22222 223799999999963 22222 10
Q ss_pred -CCCC---CCC------ceeeccCCCCC----CC------C-CCCeEEEECCCCcHHHHHHHHhc---------------
Q 013943 182 -GSDE---FGG------DIRHTSLYKSG----ED------F-RGKRVLVVGCGNSGMEVCLDLCN--------------- 225 (433)
Q Consensus 182 -g~~~---~~~------~~~~~~~~~~~----~~------~-~~~~v~VvG~G~~a~e~a~~l~~--------------- 225 (433)
|.+. ..| .+.+.....+. .. + ..++++|||.|++|+|+|+.|+.
T Consensus 154 GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL 233 (506)
T PTZ00188 154 GGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYL 233 (506)
T ss_pred cccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHH
Confidence 2210 111 11111111110 01 1 45689999999999999998643
Q ss_pred -----c-CCCcEEEEecC
Q 013943 226 -----H-DAMPSLVVRDT 237 (433)
Q Consensus 226 -----~-g~~Vtl~~r~~ 237 (433)
. -.+|+++.|++
T Consensus 234 ~~L~~s~v~~V~ivgRRG 251 (506)
T PTZ00188 234 KVIKRHNIKHIYIVGRRG 251 (506)
T ss_pred HHHHhCCCcEEEEEEecC
Confidence 2 24799999998
No 87
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.74 E-value=1.9e-16 Score=143.80 Aligned_cols=148 Identities=23% Similarity=0.289 Sum_probs=98.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKER--GIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~--g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
.+.|.|||+||||+.+|..|.++ +.+|.|+|+.+.+.|..++.. . |..+-...+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV-----------------A------PDHpEvKnvi 76 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV-----------------A------PDHPEVKNVI 76 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc-----------------C------CCCcchhhHH
Confidence 45899999999999999999995 579999999998877755531 1 1222334445
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCCCCCce
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDEFGGDI 190 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~ 190 (433)
.-+.+.+++....+..|.+| +. . +.+.+ -+-.||.||+|.|+ ..++..+|||.+. .+ +
T Consensus 77 ntFt~~aE~~rfsf~gNv~v------G~--d--vsl~e---------L~~~ydavvLaYGa-~~dR~L~IPGe~l-~~-V 134 (468)
T KOG1800|consen 77 NTFTKTAEHERFSFFGNVKV------GR--D--VSLKE---------LTDNYDAVVLAYGA-DGDRRLDIPGEEL-SG-V 134 (468)
T ss_pred HHHHHHhhccceEEEeccee------cc--c--ccHHH---------HhhcccEEEEEecC-CCCcccCCCCccc-cc-c
Confidence 55666666655555555444 10 0 22221 34468999999997 4566678999863 11 1
Q ss_pred eec-------cCC----CCCCCCCCCeEEEECCCCcHHHHHHHHhc
Q 013943 191 RHT-------SLY----KSGEDFRGKRVLVVGCGNSGMEVCLDLCN 225 (433)
Q Consensus 191 ~~~-------~~~----~~~~~~~~~~v~VvG~G~~a~e~a~~l~~ 225 (433)
+.. ... ....++...+|+|||.|++|+|+|+.|..
T Consensus 135 ~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 135 ISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred eehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhC
Confidence 111 111 12345568899999999999999999874
No 88
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=2.1e-15 Score=142.96 Aligned_cols=194 Identities=20% Similarity=0.214 Sum_probs=123.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC---CCEEEEecCCCCCC-cccccccCceeeecCCceeec--CCC------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERG---IPSILLERSNCIAS-LWQLKTYDRLRLHLPKQFCEL--PLM------------ 94 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g---~~v~iie~~~~~gg-~w~~~~~~~~~~~~~~~~~~~--~~~------------ 94 (433)
|++|+|||+|++|+.+|.+|.+.. ..|.|+|+...+|. .-+...-+...++.++..+.. ++.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 578999999999999999999863 24999999998874 333322222233333322221 110
Q ss_pred ---CCC----CCCCCCCCHHHHHHHHHHHHHHc----CCc-c-eecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEE
Q 013943 95 ---GFP----SEFPTYPSKQQFVDYLEAYAKRF----EIR-P-RFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYR 161 (433)
Q Consensus 95 ---~~~----~~~~~~~~~~~~~~~l~~~~~~~----~l~-~-~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 161 (433)
..+ .+-+.|+.+..|-+|+.+.+..+ .-. + +...+.+++....+...+.+...+| ....
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--------~~~~ 152 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--------PSEI 152 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC--------Ceee
Confidence 001 12245778888888888765433 211 2 4455677777775556777888887 7889
Q ss_pred eCEEEEccCCCCCCccCCccCCCCCCCc-eeeccCCCCC---CCCCCCeEEEECCCCcHHHHHHHHhccCC--CcEEEEe
Q 013943 162 CRWLVVATGENAEAVVPEIEGSDEFGGD-IRHTSLYKSG---EDFRGKRVLVVGCGNSGMEVCLDLCNHDA--MPSLVVR 235 (433)
Q Consensus 162 ~d~viiAtG~~~~p~~p~~~g~~~~~~~-~~~~~~~~~~---~~~~~~~v~VvG~G~~a~e~a~~l~~~g~--~Vtl~~r 235 (433)
||.+|+|||+ +.|..+.. ...+.+. .+....+... ......+|+|+|+|.+-+|....|.+.|. +||+++|
T Consensus 153 ad~~Vlatgh-~~~~~~~~--~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSR 229 (474)
T COG4529 153 ADIIVLATGH-SAPPADPA--ARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISR 229 (474)
T ss_pred eeEEEEeccC-CCCCcchh--hhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEec
Confidence 9999999996 33322221 1111111 1222122111 12245579999999999999999999874 8999999
Q ss_pred cC
Q 013943 236 DT 237 (433)
Q Consensus 236 ~~ 237 (433)
+.
T Consensus 230 rG 231 (474)
T COG4529 230 RG 231 (474)
T ss_pred cc
Confidence 99
No 89
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.72 E-value=2.2e-17 Score=151.12 Aligned_cols=296 Identities=14% Similarity=0.115 Sum_probs=184.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCC--------CcccccccCceeeecCCceeecCCCCCC-----
Q 013943 33 VPGPVIVGAGPSGLATAACLKER--GIPSILLERSNCIA--------SLWQLKTYDRLRLHLPKQFCELPLMGFP----- 97 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~--g~~v~iie~~~~~g--------g~w~~~~~~~~~~~~~~~~~~~~~~~~~----- 97 (433)
....+|||+|.+..+++...... +.++++|...+.+. ..|.+..-. +...+.|....-.
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn------~~k~lrfkqwsGkeRsif 251 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPN------SAKKLRFKQWSGKERSIF 251 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCC------hhhheeecccCCccceeE
Confidence 36789999999988887776654 45888887665432 123221100 0011111111000
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 98 -SEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 98 -~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
+....|++.+++-+.. .-|+.+..+.+|+.++..+.. |.+++| .++.||.++|||| .+|.
T Consensus 252 fepd~FfvspeDLp~~~-----nGGvAvl~G~kvvkid~~d~~----V~LnDG--------~~I~YdkcLIATG--~~Pk 312 (659)
T KOG1346|consen 252 FEPDGFFVSPEDLPKAV-----NGGVAVLRGRKVVKIDEEDKK----VILNDG--------TTIGYDKCLIATG--VRPK 312 (659)
T ss_pred ecCCcceeChhHCcccc-----cCceEEEeccceEEeecccCe----EEecCC--------cEeehhheeeecC--cCcc
Confidence 0112345555554432 237888999999999887643 888888 8999999999999 6665
Q ss_pred cCC-cc--CCCCC-CCceeeccCCCC---CCCCCCCeEEEECCCCcHHHHHHHHhcc----CCCcEEEEecCcceecccc
Q 013943 177 VPE-IE--GSDEF-GGDIRHTSLYKS---GEDFRGKRVLVVGCGNSGMEVCLDLCNH----DAMPSLVVRDTVHVLPQEM 245 (433)
Q Consensus 177 ~p~-~~--g~~~~-~~~~~~~~~~~~---~~~~~~~~v~VvG~G~~a~e~a~~l~~~----g~~Vtl~~r~~~~~lp~~~ 245 (433)
-.+ +. +.+.. .-..++...... ......++|.|||+|+.|.|+|-.|.+. |.+|.-+.
T Consensus 313 ~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF----------- 381 (659)
T KOG1346|consen 313 KLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVF----------- 381 (659)
T ss_pred cchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEee-----------
Confidence 432 21 11100 011233222111 1112347899999999999999999886 23344322
Q ss_pred cCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC-
Q 013943 246 LGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG- 324 (433)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 324 (433)
.....+...||..+.++. .+.+++++|.++++
T Consensus 382 ------~Ek~nm~kiLPeyls~wt-----------------------------------------~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 382 ------EEKYNMEKILPEYLSQWT-----------------------------------------IEKIRKGGVDVRPNA 414 (659)
T ss_pred ------cccCChhhhhHHHHHHHH-----------------------------------------HHHHHhcCceeccch
Confidence 122233344444433332 35677889999988
Q ss_pred -ceEEeC--Ce--EEEcCCcEecccEEEEccCCCCCCCCccccccccccC-CCCcCCCCCCCCCCCCceEEeeecccc--
Q 013943 325 -IKRLKR--YA--VEFVNGRCENFDAIILATGYRSNVPSWLKESEMFSRK-DGLPRRPFPNGWKGESGLYSVGFTKRG-- 396 (433)
Q Consensus 325 -v~~~~~--~~--v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~~iya~Gd~~~~-- 396 (433)
|.++.. +. +.+.||.++..|+|+.|+|..||+ .+....+|..|+ -|.+++|.++ ....|||++||++-.
T Consensus 415 ~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~-ela~~sgLeiD~~lGGfrvnaeL--~ar~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS-ELAEASGLEIDEKLGGFRVNAEL--KARENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch-hhcccccceeecccCcEEeehee--ecccceeeecchhhhhc
Confidence 555432 23 667899999999999999999999 687777887763 4667777333 445899999998831
Q ss_pred ----------cccchhhHHHHHHHHHhh
Q 013943 397 ----------LLGVAMDAKRIAQDIESC 414 (433)
Q Consensus 397 ----------~~~a~~~g~~~a~~i~~~ 414 (433)
...|+..|+.+.+|..+.
T Consensus 492 ~~LGrRRVehhdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 492 GVLGRRRVEHHDHAVVSGRLAGENMTGA 519 (659)
T ss_pred ccccceeccccccceeeceecccccccc
Confidence 225777888888877654
No 90
>PRK09897 hypothetical protein; Provisional
Probab=99.66 E-value=1.8e-14 Score=143.25 Aligned_cols=189 Identities=14% Similarity=0.144 Sum_probs=114.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCC-Cc-ccccc-cCceeee-----c---CCceeecCCC-----
Q 013943 33 VPGPVIVGAGPSGLATAACLKERG--IPSILLERSNCIA-SL-WQLKT-YDRLRLH-----L---PKQFCELPLM----- 94 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~g-g~-w~~~~-~~~~~~~-----~---~~~~~~~~~~----- 94 (433)
|++|+|||||++|+.+|.+|.+.+ ++|+|||++..+| |. |.... .+.+.++ . +..+..+...
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 578999999999999999998864 5999999988777 43 33210 0111111 0 1111111000
Q ss_pred ----CCC---CCCCCCCCHHHHHHHHHHHHH-------HcC--CcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeE
Q 013943 95 ----GFP---SEFPTYPSKQQFVDYLEAYAK-------RFE--IRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEM 158 (433)
Q Consensus 95 ----~~~---~~~~~~~~~~~~~~~l~~~~~-------~~~--l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~ 158 (433)
... .....|+.+..+-+|+.+.+. ..+ +.++.+++|++++..+ +.|.+++.++ ..
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~g-------g~ 151 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQD-------LP 151 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCC-------Ce
Confidence 000 011245666666656555333 233 4567788999998876 5677877543 16
Q ss_pred EEEeCEEEEccCCCCCCccCCccCCCCCCCceeeccCCCC--CCCCCCCeEEEECCCCcHHHHHHHHhccC---------
Q 013943 159 EYRCRWLVVATGENAEAVVPEIEGSDEFGGDIRHTSLYKS--GEDFRGKRVLVVGCGNSGMEVCLDLCNHD--------- 227 (433)
Q Consensus 159 ~~~~d~viiAtG~~~~p~~p~~~g~~~~~~~~~~~~~~~~--~~~~~~~~v~VvG~G~~a~e~a~~l~~~g--------- 227 (433)
.+.+|.||+|||+. .|..+ .+... +....|.. .....+.+|+|+|.|.+++|++..|...+
T Consensus 152 ~i~aD~VVLAtGh~-~p~~~--~~~~~-----yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~ 223 (534)
T PRK09897 152 SETFDLAVIATGHV-WPDEE--EATRT-----YFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQ 223 (534)
T ss_pred EEEcCEEEECCCCC-CCCCC--hhhcc-----ccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCC
Confidence 78999999999962 22211 11111 11111111 11223689999999999999999887542
Q ss_pred ------------CCcEEEEecCc
Q 013943 228 ------------AMPSLVVRDTV 238 (433)
Q Consensus 228 ------------~~Vtl~~r~~~ 238 (433)
.+|++++|+..
T Consensus 224 ~~~l~y~~sg~~~~I~a~SRrGl 246 (534)
T PRK09897 224 HVVFHRDNASEKLNITLMSRTGI 246 (534)
T ss_pred cceeeecCCCCCceEEEEeCCCC
Confidence 26889999984
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.64 E-value=9.8e-17 Score=141.71 Aligned_cols=123 Identities=24% Similarity=0.322 Sum_probs=75.7
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH---
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD--- 111 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 111 (433)
||+|||||+||+.+|..|++.+.+++++|+.+........ .+..... ........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~--~~~~~~~-----------------~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC--IPSPLLV-----------------EIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH--HHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc--ccccccc-----------------cccccccccccccc
Confidence 6999999999999999999999999999887632110000 0000000 00000011110
Q ss_pred -HHHHHHHHcCCcceecceEEEEEEeCCC---CeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCC
Q 013943 112 -YLEAYAKRFEIRPRFNETVSQAEYDATI---RFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGS 183 (433)
Q Consensus 112 -~l~~~~~~~~l~~~~~~~v~~v~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~ 183 (433)
.+.+.+...+++++.++++.+++..... ..+.+.... ......+.||+||+||| +.|+.|.+||.
T Consensus 62 ~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~lviAtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 62 FKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVE-----TGDGREIKYDYLVIATG--SRPRTPNIPGE 130 (201)
T ss_dssp GHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEE-----TTTEEEEEEEEEEEEST--EEEEEESSTTT
T ss_pred cccccccccceEEEeeccccccccccccccccCcccceeec-----cCCceEecCCeeeecCc--cccceeecCCC
Confidence 2222335567888888999999887631 012222111 12247899999999999 88888888886
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.61 E-value=5.6e-14 Score=131.63 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=37.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ 73 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~ 73 (433)
.+++|||||++|+++|+.|++.|+++.++|+++.+||...
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence 7899999999999999999999999999999999999643
No 93
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.56 E-value=2.7e-14 Score=123.57 Aligned_cols=298 Identities=17% Similarity=0.187 Sum_probs=146.7
Q ss_pred eEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 36 PVIVGAGPSGLATAACLKERG--IPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 36 VvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|||||+||++||..|+.+. .+|+++...+-.-. ...-..+..|+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vks--------------------------------vtn~~~i~~yl 49 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS--------------------------------VTNYQKIGQYL 49 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH--------------------------------HhhHHHHHHHH
Confidence 589999999999999999874 47888876652210 01122233333
Q ss_pred HHH------HHHcCCcc--eecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCC
Q 013943 114 EAY------AKRFEIRP--RFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDE 185 (433)
Q Consensus 114 ~~~------~~~~~l~~--~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~ 185 (433)
.++ +.+++-.+ ..+ .|..++..+ .+ +++++| ..+.|++|++|+| .+|..- ..+.+.
T Consensus 50 ekfdv~eq~~~elg~~f~~~~~-~v~~~~s~e--hc--i~t~~g--------~~~ky~kKOG~tg--~kPklq-~E~~n~ 113 (334)
T KOG2755|consen 50 EKFDVKEQNCHELGPDFRRFLN-DVVTWDSSE--HC--IHTQNG--------EKLKYFKLCLCTG--YKPKLQ-VEGINP 113 (334)
T ss_pred HhcCccccchhhhcccHHHHHH-hhhhhcccc--ce--EEecCC--------ceeeEEEEEEecC--CCccee-ecCCCc
Confidence 321 11111111 111 133333333 33 778877 7899999999999 777653 222121
Q ss_pred CCCceeeccCC-----CCCCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhh
Q 013943 186 FGGDIRHTSLY-----KSGEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKW 260 (433)
Q Consensus 186 ~~~~~~~~~~~-----~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~ 260 (433)
.++...+. .......+|.|+|+|.|-+++|++.++.. .+|+|....+ ++...+......+.+.. ++
T Consensus 114 ---~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~--~nv~w~ikd~-~IsaTFfdpGaaef~~i---~l 184 (334)
T KOG2755|consen 114 ---KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKI--LNVTWKIKDE-GISATFFDPGAAEFYDI---NL 184 (334)
T ss_pred ---eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhc--ceeEEEecch-hhhhcccCccHHHHhHh---hh
Confidence 22222111 12233468999999999999999988865 4789988877 44332222111111110 00
Q ss_pred cchHHHHHHHHHHHHHhhccccc--cCCCCCCCCcccccccCCCc-cccCchhhhhhhcCCeEEecCceEEeCCeEEEc-
Q 013943 261 LPMRLVDKLLLVVSWLMLGDTAR--FGLDRPLLGPLQLKNLSGKT-PVLDAGTLAKIKSGHIRVFPGIKRLKRYAVEFV- 336 (433)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~v~~~~~~~v~~~- 336 (433)
.-+.. .+.......++.+.+.+ ....-+.+++..-....-.. ....+.....++.--+.+... -+...+.-.
T Consensus 185 ~a~~s-~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~---~d~~sv~~~~ 260 (334)
T KOG2755|consen 185 RADRS-TRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDT---SDNLSVHYMD 260 (334)
T ss_pred hcccc-cchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccc---hhhccccccc
Confidence 00000 00000001111100000 00001111111111110000 001111111111111111000 000011111
Q ss_pred --C--CcEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCCCCCCCCCceEEeeecccc
Q 013943 337 --N--GRCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG 396 (433)
Q Consensus 337 --~--g~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~ 396 (433)
. ...+.+|.+++|||..||.. |.-...+...++|.+.++ +.+.++.|++||+||.+..
T Consensus 261 ~ek~~~~qlt~d~ivSatgvtpn~e-~~~~~~lq~~edggikvd-d~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 261 KEKMADNQLTCDFIVSATGVTPNSE-WAMNKMLQITEDGGIKVD-DAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred ccccccceeeeeEEEeccccCcCce-EEecChhhhccccCeeeh-hhccccccceeeecceecc
Confidence 1 13467999999999999995 554443333477778888 6889999999999998873
No 94
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=128.29 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=99.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc---------c--ccCceeeecC---Ccee----ecC-
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL---------K--TYDRLRLHLP---KQFC----ELP- 92 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~---------~--~~~~~~~~~~---~~~~----~~~- 92 (433)
+++||+|||||||||.||..+.+.|.+|++||+.+++|....- + .++.+..+.| ++.. .|.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 5789999999999999999999999999999999977732111 1 1122222233 1111 010
Q ss_pred ----------CCCCCC-----CCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCcee
Q 013943 93 ----------LMGFPS-----EFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEE 157 (433)
Q Consensus 93 ----------~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~ 157 (433)
..++.+ .||.-.....+++.+...+++.+++++++++|.+++.++ ..|.+++.++
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g-------- 151 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSG-------- 151 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCC--------
Confidence 011111 123334688999999999999999999999999999987 6788999986
Q ss_pred EEEEeCEEEEccCCCCCCc
Q 013943 158 MEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 158 ~~~~~d~viiAtG~~~~p~ 176 (433)
.++.||.+|+|||..|.|.
T Consensus 152 ~~i~~d~lilAtGG~S~P~ 170 (408)
T COG2081 152 ETVKCDSLILATGGKSWPK 170 (408)
T ss_pred CEEEccEEEEecCCcCCCC
Confidence 5899999999999777664
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.37 E-value=2.2e-12 Score=124.73 Aligned_cols=134 Identities=25% Similarity=0.324 Sum_probs=77.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc--------ccc-c---ccCceeee---cCCcee----ec---
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL--------WQL-K---TYDRLRLH---LPKQFC----EL--- 91 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~--------w~~-~---~~~~~~~~---~~~~~~----~~--- 91 (433)
|||+|||||+|||.||..+++.|.+|+|+|+++.+|-. .+. + ....+... .+.... .+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 79999999999999999999999999999999877621 110 0 00111111 011100 00
Q ss_pred --------CCCCCC--C---CCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeE
Q 013943 92 --------PLMGFP--S---EFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEM 158 (433)
Q Consensus 92 --------~~~~~~--~---~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~ 158 (433)
...+.. + .+|.-....++.+.+...+++.+++++++++|.+++..++ ..|.|.++++ .
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f~v~~~~~--------~ 151 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVFGVKTKNG--------G 151 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEEEEEETTT--------E
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-ceeEeeccCc--------c
Confidence 001100 0 0122236788999999999999999999999999998774 4588888443 7
Q ss_pred EEEeCEEEEccCCCCCCc
Q 013943 159 EYRCRWLVVATGENAEAV 176 (433)
Q Consensus 159 ~~~~d~viiAtG~~~~p~ 176 (433)
.+.+|.||+|||..+.|.
T Consensus 152 ~~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 152 EYEADAVILATGGKSYPK 169 (409)
T ss_dssp EEEESEEEE----SSSGG
T ss_pred cccCCEEEEecCCCCccc
Confidence 999999999999765553
No 96
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.31 E-value=2.8e-11 Score=108.06 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=61.3
Q ss_pred cEecccEEEEccCCCCCCCCccccccccccCCCCcCCCCC-CCCCCCCceEEeeecccccc-----cchhhHHHHHHHHH
Q 013943 339 RCENFDAIILATGYRSNVPSWLKESEMFSRKDGLPRRPFP-NGWKGESGLYSVGFTKRGLL-----GVAMDAKRIAQDIE 412 (433)
Q Consensus 339 ~~~~~D~vi~atG~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~~iya~Gd~~~~~~-----~a~~~g~~~a~~i~ 412 (433)
++++++++-.....+++ +++....+. |..|++-+|.. ++.+..||+|++|||...+. .+..++..+-+++.
T Consensus 281 ~ei~yslLHv~Ppms~p--e~l~~s~~a-dktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 281 EEIEYSLLHVTPPMSTP--EVLANSDLA-DKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred eEEeeeeeeccCCCCCh--hhhhcCccc-CcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHH
Confidence 35788888877776665 567777765 49999999954 45567899999999997643 34567778888898
Q ss_pred hhhccCCchhh
Q 013943 413 SCWKAKAPFAR 423 (433)
Q Consensus 413 ~~l~~~~~~~~ 423 (433)
..++...|..+
T Consensus 358 ~~m~g~~pt~~ 368 (446)
T KOG3851|consen 358 QVMQGKRPTMK 368 (446)
T ss_pred HHhcCCCccee
Confidence 88887766544
No 97
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.27 E-value=4.6e-11 Score=111.94 Aligned_cols=131 Identities=23% Similarity=0.255 Sum_probs=86.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccC-----ceeee------cCC--ceeecC----CCCC
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYD-----RLRLH------LPK--QFCELP----LMGF 96 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~-----~~~~~------~~~--~~~~~~----~~~~ 96 (433)
|||+|||||++|+++|..|++.|++|+|+|+....+..+...... .+... ... .+.... ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 699999999999999999999999999999998655432211000 00000 000 000000 0111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 97 PSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
+........+.++.+.+.+.+.+.+++++++++|+++..+++ .+.+...++ ..++++|+||+|+|..+
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~~~~~~~~-------~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD--RVVVIVRGG-------EGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EEEEEEcCc-------cEEEEeCEEEECCCcch
Confidence 111112357888999999999999999999999999988763 444544432 26899999999999654
No 98
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.25 E-value=1.2e-10 Score=113.57 Aligned_cols=137 Identities=20% Similarity=0.243 Sum_probs=85.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CCC---CCcccc--------------cccCceeeecCCceeecCCCC
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERS-NCI---ASLWQL--------------KTYDRLRLHLPKQFCELPLMG 95 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~-~~~---gg~w~~--------------~~~~~~~~~~~~~~~~~~~~~ 95 (433)
|||+||||||+|+++|..|++.|++|+++|+. ... |+.... ..+....+..+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 79999999999999999999999999999997 211 111101 111122222221100000011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 96 FPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
....+.....+..+..++.+.+.+.+++++.. +|+++...+ ..+.++..++....+++..++++|.||.|+|..+
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR--DGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 11111123688899999999998899998654 688887766 4566766542111122336899999999999655
No 99
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.24 E-value=1.4e-10 Score=112.64 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=32.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
.+||+|||+|++|+++|..|.+.|.+|+++|++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999874
No 100
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.24 E-value=1.5e-10 Score=97.47 Aligned_cols=125 Identities=25% Similarity=0.309 Sum_probs=88.4
Q ss_pred EEECCChHHHHHHHHHHHc-----CCCEEEEecCCCC-CCcccccccCceeeecCCceeec-CCCC-----------C--
Q 013943 37 VIVGAGPSGLATAACLKER-----GIPSILLERSNCI-ASLWQLKTYDRLRLHLPKQFCEL-PLMG-----------F-- 96 (433)
Q Consensus 37 vIIGaG~aGl~~A~~L~~~-----g~~v~iie~~~~~-gg~w~~~~~~~~~~~~~~~~~~~-~~~~-----------~-- 96 (433)
+|||+|++|++++.+|.++ ..+|+|||+.+.. |+.|.....+...++.+...+.+ +..+ .
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999988 3599999996653 35676643344444444433322 1111 0
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHc------CCcc-eecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEE
Q 013943 97 ---PSEFPTYPSKQQFVDYLEAYAKRF------EIRP-RFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLV 166 (433)
Q Consensus 97 ---~~~~~~~~~~~~~~~~l~~~~~~~------~l~~-~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~vi 166 (433)
......|+.+..+-+|+.+.++.. ++++ +...+|++++..+ +.|.+.+.+| ..+.+|.||
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~--~~~~v~~~~g--------~~~~~d~Vv 150 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD--DGYRVVTADG--------QSIRADAVV 150 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC--CcEEEEECCC--------CEEEeCEEE
Confidence 112245789999999999876653 3343 5567899999987 5578888887 788999999
Q ss_pred EccCC
Q 013943 167 VATGE 171 (433)
Q Consensus 167 iAtG~ 171 (433)
+|||+
T Consensus 151 La~Gh 155 (156)
T PF13454_consen 151 LATGH 155 (156)
T ss_pred ECCCC
Confidence 99995
No 101
>PRK06847 hypothetical protein; Provisional
Probab=99.23 E-value=3.1e-10 Score=110.34 Aligned_cols=134 Identities=24% Similarity=0.234 Sum_probs=89.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc----ccc----------c----------ccCceeeecCCc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL----WQL----------K----------TYDRLRLHLPKQ 87 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~----w~~----------~----------~~~~~~~~~~~~ 87 (433)
+++||+|||||++|+++|..|.+.|++|+|+|+.+..... ... . ....+....+..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 5789999999999999999999999999999998643210 000 0 011111111110
Q ss_pred --eeecCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEe
Q 013943 88 --FCELPLMGF-PSEF--PTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC 162 (433)
Q Consensus 88 --~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 162 (433)
...++...+ ...+ .....+.++.+++.+.+.+.+++++++++|++++..+ ..+.+.+.++ .++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~g--------~~~~a 152 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFSDG--------TTGRY 152 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEcCC--------CEEEc
Confidence 001110000 0011 1234678889999999988899999999999998766 4577777765 57899
Q ss_pred CEEEEccCCCCCC
Q 013943 163 RWLVVATGENAEA 175 (433)
Q Consensus 163 d~viiAtG~~~~p 175 (433)
|.||+|+|.++..
T Consensus 153 d~vI~AdG~~s~~ 165 (375)
T PRK06847 153 DLVVGADGLYSKV 165 (375)
T ss_pred CEEEECcCCCcch
Confidence 9999999976533
No 102
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.21 E-value=2.6e-10 Score=112.32 Aligned_cols=131 Identities=18% Similarity=0.136 Sum_probs=85.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc------ccccc----cCceeee---------------cCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL------WQLKT----YDRLRLH---------------LPK 86 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~------w~~~~----~~~~~~~---------------~~~ 86 (433)
.+|||+||||||+|+++|..|++.|++|+|+|+.+.++.. ...+. ++.+... ...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 4699999999999999999999999999999998765421 11110 1100000 000
Q ss_pred ceeecCC--CCCCC-CCCCC-CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEe
Q 013943 87 QFCELPL--MGFPS-EFPTY-PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC 162 (433)
Q Consensus 87 ~~~~~~~--~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 162 (433)
....+.. ..... ....+ ..+.++...+.+.+.+.+++++.+++|+++..++ +.+.....++ ..+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g--------~~i~A 153 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADG--------DVIEA 153 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCC--------cEEEC
Confidence 0000000 00000 01112 4678888899999999999999999999998765 3333333343 57899
Q ss_pred CEEEEccCCC
Q 013943 163 RWLVVATGEN 172 (433)
Q Consensus 163 d~viiAtG~~ 172 (433)
+.||+|+|..
T Consensus 154 ~~VI~A~G~~ 163 (428)
T PRK10157 154 KTVILADGVN 163 (428)
T ss_pred CEEEEEeCCC
Confidence 9999999953
No 103
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.21 E-value=2.2e-10 Score=104.41 Aligned_cols=141 Identities=19% Similarity=0.188 Sum_probs=87.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-cccccc-cCceeeecC-CceeecCCCCCCCCCC--CCCCHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS-LWQLKT-YDRLRLHLP-KQFCELPLMGFPSEFP--TYPSKQ 107 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg-~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~ 107 (433)
.+||+||||||+|+++|+.|++.|++|+++|+...+|| .|.... ++......+ ..++.-...++..... ...++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 48999999999999999999999999999999987765 443211 111111000 0000001111111111 123677
Q ss_pred HHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCc---CCCceeEEEEeCEEEEccCCCC
Q 013943 108 QFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQ---KCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 108 ~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~---~~~~~~~~~~~d~viiAtG~~~ 173 (433)
++...+.+.+.+.+++++++++|+++...++...+-+....... ....+...++++.||+|||+.+
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 88888888889999999999999999875531222222221000 0011246899999999999643
No 104
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.20 E-value=2.4e-10 Score=103.73 Aligned_cols=140 Identities=22% Similarity=0.275 Sum_probs=88.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-Ccccccc-cCceeeecC-CceeecCCCCCCCCCCC--CCCHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA-SLWQLKT-YDRLRLHLP-KQFCELPLMGFPSEFPT--YPSKQ 107 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g-g~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~ 107 (433)
.+||+||||||+|+++|+.|++.|.+|+|+|++..+| +.|.... ++.+....+ ..++.-...++...-.+ ...+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 5899999999999999999999999999999998876 4554321 111111111 01111111222111111 13567
Q ss_pred HHHHHHHHHHHHcCCcceecceEEEEEEeCCC-CeEEEEEeecCcCC---CceeEEEEeCEEEEccCCC
Q 013943 108 QFVDYLEAYAKRFEIRPRFNETVSQAEYDATI-RFWRVKTTVGGQKC---GVEEMEYRCRWLVVATGEN 172 (433)
Q Consensus 108 ~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~-~~~~v~~~~g~~~~---~~~~~~~~~d~viiAtG~~ 172 (433)
++...+.+.+.+.+++++++++|+++...++. ...-+.++...... ..+...++++.||.|||+.
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 88888888888999999999999999876542 11122222110000 1124689999999999953
No 105
>PLN02463 lycopene beta cyclase
Probab=99.19 E-value=1.9e-10 Score=112.93 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=87.0
Q ss_pred ccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-----CcccccccCcee------eecCCceeecCC--CCC
Q 013943 30 CICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA-----SLWQLKTYDRLR------LHLPKQFCELPL--MGF 96 (433)
Q Consensus 30 ~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g-----g~w~~~~~~~~~------~~~~~~~~~~~~--~~~ 96 (433)
....|||+||||||+|+++|..|++.|++|+++|+.+... +.|... ...+. ...+.....+.. ...
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~-l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDE-FEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHH-HHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 4457999999999999999999999999999999975321 233211 00000 000100000000 000
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 97 PSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
....-+.+.+.++.+.+.+.+.+.+++++ ..+|++++..+ ..+.|++++| .++++|.||.|+|..+
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~~V~~~dG--------~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKSLVVCDDG--------VKIQASLVLDATGFSR 169 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeEEEEECCC--------CEEEcCEEEECcCCCc
Confidence 00111235788899999998888888875 56899998876 4567888776 6899999999999643
No 106
>PRK08013 oxidoreductase; Provisional
Probab=99.18 E-value=3.1e-10 Score=111.17 Aligned_cols=132 Identities=19% Similarity=0.146 Sum_probs=86.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC---C----------------------ccccc------ccCcee
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA---S----------------------LWQLK------TYDRLR 81 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g---g----------------------~w~~~------~~~~~~ 81 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+... | .|..- .+..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 5899999999999999999999999999999986522 1 11110 011111
Q ss_pred eecCCc--eeecCCCCCCCC-CCCCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCcee
Q 013943 82 LHLPKQ--FCELPLMGFPSE-FPTYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEE 157 (433)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~ 157 (433)
...+.. ...+........ ....+.+.++...+.+.+.+. +++++++++|++++.++ ..+++++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g-------- 152 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLTLKDG-------- 152 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEEEcCC--------
Confidence 111100 000110000000 001246777888888877775 78899999999998776 4566777665
Q ss_pred EEEEeCEEEEccCCCCC
Q 013943 158 MEYRCRWLVVATGENAE 174 (433)
Q Consensus 158 ~~~~~d~viiAtG~~~~ 174 (433)
.++++|+||.|.|..|.
T Consensus 153 ~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 153 SMLTARLVVGADGANSW 169 (400)
T ss_pred CEEEeeEEEEeCCCCcH
Confidence 68999999999997653
No 107
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.17 E-value=1.6e-10 Score=101.14 Aligned_cols=125 Identities=20% Similarity=0.279 Sum_probs=84.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCC--------------------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPK-------------------------- 86 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~-------------------------- 86 (433)
|.+|+|||+|++|++||..|+..|.+|++|||+..+||....+..++-..+...
T Consensus 1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 346999999999999999999999999999999988886555332221111111
Q ss_pred --ceeecCCC---CCCCC--CCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEE
Q 013943 87 --QFCELPLM---GFPSE--FPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEME 159 (433)
Q Consensus 87 --~~~~~~~~---~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~ 159 (433)
..+.+... +-.+. +-+.+....+..++.. ++++.++++|+.+-..+ +.|+++++++ ...
T Consensus 81 ~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAt-----dL~V~~~~rVt~v~~~~--~~W~l~~~~g-------~~~ 146 (331)
T COG3380 81 TPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLAT-----DLTVVLETRVTEVARTD--NDWTLHTDDG-------TRH 146 (331)
T ss_pred cccccccccCCCCCCCCCCccccCcchHHHHHHHhc-----cchhhhhhhhhhheecC--CeeEEEecCC-------Ccc
Confidence 11111111 11111 1122344444544444 78899999999999985 7899999776 367
Q ss_pred EEeCEEEEccCC
Q 013943 160 YRCRWLVVATGE 171 (433)
Q Consensus 160 ~~~d~viiAtG~ 171 (433)
..+|.||||.-+
T Consensus 147 ~~~d~vvla~PA 158 (331)
T COG3380 147 TQFDDVVLAIPA 158 (331)
T ss_pred cccceEEEecCC
Confidence 899999999864
No 108
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.16 E-value=4.5e-10 Score=110.24 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=86.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCC---------------------cccc-----cccCceeeec
Q 013943 33 VPGPVIVGAGPSGLATAACLKERG--IPSILLERSNCIAS---------------------LWQL-----KTYDRLRLHL 84 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~gg---------------------~w~~-----~~~~~~~~~~ 84 (433)
+|||+||||||+|+++|..|++.| ++|+|+|+.+.... .|.. .....+....
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 589999999999999999999995 99999999864210 0100 0000111100
Q ss_pred CC-------ceeecCCCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCce
Q 013943 85 PK-------QFCELPLMG-FPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVE 156 (433)
Q Consensus 85 ~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~ 156 (433)
.. ....+.... ....+.....+.++...+.+.+.+.+++++++++|++++.++ ..+.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g------- 151 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSDG------- 151 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECCC-------
Confidence 00 000110000 000111235778899999998888899999999999998776 5677777665
Q ss_pred eEEEEeCEEEEccCCCC
Q 013943 157 EMEYRCRWLVVATGENA 173 (433)
Q Consensus 157 ~~~~~~d~viiAtG~~~ 173 (433)
.++.+|.||.|+|..+
T Consensus 152 -~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 152 -SVLEARLLVAADGARS 167 (403)
T ss_pred -CEEEeCEEEEcCCCCh
Confidence 5799999999999654
No 109
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.16 E-value=1.3e-09 Score=110.72 Aligned_cols=137 Identities=26% Similarity=0.291 Sum_probs=89.0
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccccc------------------------ccCceeeecCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLK------------------------TYDRLRLHLPK 86 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~------------------------~~~~~~~~~~~ 86 (433)
...+||+||||||+|+++|..|++.|++|+|+|+.+......+.. ...........
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 567999999999999999999999999999999997543211100 01111111111
Q ss_pred --ceeecCCCCCCC--CCC--CCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEE
Q 013943 87 --QFCELPLMGFPS--EFP--TYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEME 159 (433)
Q Consensus 87 --~~~~~~~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~ 159 (433)
....+.. +... .++ ....+.++...+.+.+.+. +++++++++|++++.++ +.+++++.+. +++..+
T Consensus 88 g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v~~~~~----~G~~~~ 160 (538)
T PRK06183 88 GRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTVTLTDA----DGQRET 160 (538)
T ss_pred CCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEEEEEcC----CCCEEE
Confidence 1111111 0000 111 1235667777787777765 88999999999999877 4566766531 233468
Q ss_pred EEeCEEEEccCCCCC
Q 013943 160 YRCRWLVVATGENAE 174 (433)
Q Consensus 160 ~~~d~viiAtG~~~~ 174 (433)
+++|+||.|+|..|.
T Consensus 161 i~ad~vVgADG~~S~ 175 (538)
T PRK06183 161 VRARYVVGCDGANSF 175 (538)
T ss_pred EEEEEEEecCCCchh
Confidence 999999999997653
No 110
>PRK08244 hypothetical protein; Provisional
Probab=99.15 E-value=8e-10 Score=111.25 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=84.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-------------------cccc-----cccCceeeecCCce
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS-------------------LWQL-----KTYDRLRLHLPKQF 88 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg-------------------~w~~-----~~~~~~~~~~~~~~ 88 (433)
.+||+||||||+|+++|..|++.|++|+|||+.+.... .|.. ..............
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 48999999999999999999999999999999864321 0000 00000000000000
Q ss_pred eecCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEc
Q 013943 89 CELPLMGFPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVA 168 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiA 168 (433)
..+................++...+.+.+.+.++++++++++++++.++ +.+++++.+. ++ ..++++|+||.|
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~~----~g-~~~i~a~~vVgA 154 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVRGP----DG-LRTLTSSYVVGA 154 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEEeC----Cc-cEEEEeCEEEEC
Confidence 0010000000011123567788888888888899999999999998876 4455655431 11 257999999999
Q ss_pred cCCCC
Q 013943 169 TGENA 173 (433)
Q Consensus 169 tG~~~ 173 (433)
.|..|
T Consensus 155 DG~~S 159 (493)
T PRK08244 155 DGAGS 159 (493)
T ss_pred CCCCh
Confidence 99765
No 111
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.14 E-value=6.8e-10 Score=108.54 Aligned_cols=132 Identities=21% Similarity=0.229 Sum_probs=86.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----C--------------------ccccc------ccCcee
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA----S--------------------LWQLK------TYDRLR 81 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g----g--------------------~w~~~------~~~~~~ 81 (433)
..+||+||||||+|+++|..|+++|++|+|+|+.+... + .|... .+..+.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 46899999999999999999999999999999976321 1 01000 000110
Q ss_pred eecCC--ceeecCCCCCCC-CCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeE
Q 013943 82 LHLPK--QFCELPLMGFPS-EFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEM 158 (433)
Q Consensus 82 ~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~ 158 (433)
..... ....+....... .......+.++...+.+.+++.+++++++++|++++.++ ..+++++.++ .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~g--------~ 154 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVRLRLDDG--------R 154 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEEEEECCC--------C
Confidence 00000 001111100000 001123567888888888888899999999999998766 4567777665 5
Q ss_pred EEEeCEEEEccCCCC
Q 013943 159 EYRCRWLVVATGENA 173 (433)
Q Consensus 159 ~~~~d~viiAtG~~~ 173 (433)
++++|.||.|+|..+
T Consensus 155 ~~~a~~vV~AdG~~S 169 (392)
T PRK08773 155 RLEAALAIAADGAAS 169 (392)
T ss_pred EEEeCEEEEecCCCc
Confidence 789999999999655
No 112
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.14 E-value=4.1e-10 Score=110.98 Aligned_cols=136 Identities=21% Similarity=0.313 Sum_probs=82.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----C-----------------ccccc-----ccCceeeecC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA----S-----------------LWQLK-----TYDRLRLHLP 85 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g----g-----------------~w~~~-----~~~~~~~~~~ 85 (433)
..+||+|||||++|+++|..|++.|++|+|+|+.+... | .|..- ....+.....
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 35899999999999999999999999999999987532 1 01100 0000011000
Q ss_pred C--ceeecCCCCCCCCCCCC-CCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEE
Q 013943 86 K--QFCELPLMGFPSEFPTY-PSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYR 161 (433)
Q Consensus 86 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 161 (433)
. ....+..........++ .....+.+.+.+.+.+. ++++++++++++++.++ +.+++++.++ ++..+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~-----~~~~~i~ 169 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLEIE-----GKQQTLQ 169 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEccC-----CcceEEe
Confidence 0 00111111110111111 22345667777766665 68889999999998776 4566766531 1125799
Q ss_pred eCEEEEccCCCCC
Q 013943 162 CRWLVVATGENAE 174 (433)
Q Consensus 162 ~d~viiAtG~~~~ 174 (433)
+|.||.|+|..+.
T Consensus 170 adlvIgADG~~S~ 182 (415)
T PRK07364 170 SKLVVAADGARSP 182 (415)
T ss_pred eeEEEEeCCCCch
Confidence 9999999997653
No 113
>PRK06834 hypothetical protein; Provisional
Probab=99.14 E-value=9.9e-10 Score=109.83 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=85.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC--C-----cccc--------cccCceee---ecC-Cce--eec
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA--S-----LWQL--------KTYDRLRL---HLP-KQF--CEL 91 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g--g-----~w~~--------~~~~~~~~---~~~-~~~--~~~ 91 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+... + .+.. ...+.+.- ... ..+ ..+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4899999999999999999999999999999986421 1 1110 00000000 000 000 011
Q ss_pred CCCCCCCC--CCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEcc
Q 013943 92 PLMGFPSE--FPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVAT 169 (433)
Q Consensus 92 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAt 169 (433)
.....+.. .........+...+.+.+++.+++++++++|++++.++ ..+.+++.++ .++++|+||.|+
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~~~~g--------~~i~a~~vVgAD 152 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVELSDG--------RTLRAQYLVGCD 152 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEEECCC--------CEEEeCEEEEec
Confidence 11111111 11123556777888888888899999999999999876 4566776554 589999999999
Q ss_pred CCCC
Q 013943 170 GENA 173 (433)
Q Consensus 170 G~~~ 173 (433)
|..|
T Consensus 153 G~~S 156 (488)
T PRK06834 153 GGRS 156 (488)
T ss_pred CCCC
Confidence 9765
No 114
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.13 E-value=5.6e-10 Score=109.03 Aligned_cols=131 Identities=20% Similarity=0.186 Sum_probs=87.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc------cccCcee--------eecCCceeecCCCC--
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL------KTYDRLR--------LHLPKQFCELPLMG-- 95 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~------~~~~~~~--------~~~~~~~~~~~~~~-- 95 (433)
.+|||+||||||||.+||+.|++.|++|+++|+.+.+|..-.. +....+. .........++...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 5799999999999999999999999999999998876642111 0000000 00000011111000
Q ss_pred CCCC-CCCC-CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 96 FPSE-FPTY-PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 96 ~~~~-~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
+... -..+ ..+..+..+|.+.+.+.|.+++.++++..+...++ .+.+....+ ..+++++.||.|+|.
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~--~~~~~~~~~-------~~e~~a~~vI~AdG~ 150 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDD--GVVVGVRAG-------DDEVRAKVVIDADGV 150 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCC--cEEEEEEcC-------CEEEEcCEEEECCCc
Confidence 0000 1122 36888888999999999999999999999998874 333333332 168999999999994
No 115
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.13 E-value=7.9e-10 Score=107.71 Aligned_cols=131 Identities=23% Similarity=0.262 Sum_probs=88.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CCCCCc-----ccc--------------------cccCceeeecCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERS-NCIASL-----WQL--------------------KTYDRLRLHLPK 86 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~-~~~gg~-----w~~--------------------~~~~~~~~~~~~ 86 (433)
.+||+||||||+|+++|..|++.|++|+|+|+. ..+-.. ... ..+..+......
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 589999999999999999999999999999998 211100 000 001111111111
Q ss_pred -ceeecCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcC-CcceecceEEEEEEeCCCCeEEEEEe-ecCcCCCceeEEEEe
Q 013943 87 -QFCELPLMGFPSE-FPTYPSKQQFVDYLEAYAKRFE-IRPRFNETVSQAEYDATIRFWRVKTT-VGGQKCGVEEMEYRC 162 (433)
Q Consensus 87 -~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~v~~v~~~~~~~~~~v~~~-~g~~~~~~~~~~~~~ 162 (433)
....+........ ......+.++...|.+.+.+.+ ++++++++|+.++.++ ..+++++. +| +++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~l~~dG--------~~~~a 151 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVTLSFDG--------ETLDA 151 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEEEcCCC--------cEEec
Confidence 1111111111111 1122478889999999998876 8999999999999988 44557766 76 59999
Q ss_pred CEEEEccCCCC
Q 013943 163 RWLVVATGENA 173 (433)
Q Consensus 163 d~viiAtG~~~ 173 (433)
|+||.|.|..|
T Consensus 152 ~llVgADG~~S 162 (387)
T COG0654 152 DLLVGADGANS 162 (387)
T ss_pred CEEEECCCCch
Confidence 99999999766
No 116
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.13 E-value=4.7e-10 Score=95.38 Aligned_cols=136 Identities=23% Similarity=0.319 Sum_probs=91.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-ccccc-ccCceeeecCCc-eeecCCCCCCCCCCCC--CCHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS-LWQLK-TYDRLRLHLPKQ-FCELPLMGFPSEFPTY--PSKQ 107 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 107 (433)
.-||+||||||+||+||+.|++.|.+|+|+|++-.+|| .|.-. .++.+.+..+.. +..--..+|.+.-.++ .+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 36999999999999999999999999999999988764 77664 344455544432 1111222332222222 3667
Q ss_pred HHHHHHHHHHHHcCCcceecceEEEEEEeCCCC--e----EEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 108 QFVDYLEAYAKRFEIRPRFNETVSQAEYDATIR--F----WRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 108 ~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~--~----~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
++..-+...+-+.+..++....|+++-..++.. . |+.....+ ....+..+++++||-|||+
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~---lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG---LHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcc---cccCcceeeEEEEEeCCCC
Confidence 777777777778899999999999987766521 1 22111111 1223468999999999996
No 117
>PRK10015 oxidoreductase; Provisional
Probab=99.12 E-value=1.6e-09 Score=106.77 Aligned_cols=131 Identities=14% Similarity=0.160 Sum_probs=83.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc------ccccc----cCcee------eecCCceeec-C--
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL------WQLKT----YDRLR------LHLPKQFCEL-P-- 92 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~------w~~~~----~~~~~------~~~~~~~~~~-~-- 92 (433)
..|||+||||||+|+++|+.|++.|++|+++|+.+.+|.. ..... .+.+. .........+ .
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 4699999999999999999999999999999998755421 11110 11110 0000000000 0
Q ss_pred ---CCCCCC------CCCCC-CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEe
Q 013943 93 ---LMGFPS------EFPTY-PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC 162 (433)
Q Consensus 93 ---~~~~~~------~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 162 (433)
...+.. ....+ ..+..+...+.+.+.+.+++++.+++|+.+..++ +.+.....++ ..+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~--------~~i~A 153 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGD--------DILEA 153 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCC--------eEEEC
Confidence 001100 00122 3677888888888989999999999999988765 3443322332 57999
Q ss_pred CEEEEccCCC
Q 013943 163 RWLVVATGEN 172 (433)
Q Consensus 163 d~viiAtG~~ 172 (433)
|.||+|+|..
T Consensus 154 ~~VI~AdG~~ 163 (429)
T PRK10015 154 NVVILADGVN 163 (429)
T ss_pred CEEEEccCcc
Confidence 9999999953
No 118
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.12 E-value=3.1e-10 Score=109.22 Aligned_cols=134 Identities=22% Similarity=0.188 Sum_probs=83.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc----------------------cc--cCce--eeecC--
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL----------------------KT--YDRL--RLHLP-- 85 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~----------------------~~--~~~~--~~~~~-- 85 (433)
+||+|||||++|+++|..|++.|++|+|||+.+........ .. .... .....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 68999999999999999999999999999998744311000 00 0000 00000
Q ss_pred ---------CceeecCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCce
Q 013943 86 ---------KQFCELPLMGFPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVE 156 (433)
Q Consensus 86 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~ 156 (433)
.....+. ............+.++...|.+.+++.++++++++++++++.+.+ .+++...++ ..++
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~~~~~---~~g~ 155 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVVVRDG---EDGE 155 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEEEEET---CTCE
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc--ccccccccc---cCCc
Confidence 0000000 000001112246788999999999999999999999999998874 444444432 1234
Q ss_pred eEEEEeCEEEEccCCCC
Q 013943 157 EMEYRCRWLVVATGENA 173 (433)
Q Consensus 157 ~~~~~~d~viiAtG~~~ 173 (433)
.+++++|.||.|.|..|
T Consensus 156 ~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 156 EETIEADLVVGADGAHS 172 (356)
T ss_dssp EEEEEESEEEE-SGTT-
T ss_pred eeEEEEeeeecccCccc
Confidence 46899999999999765
No 119
>PRK06184 hypothetical protein; Provisional
Probab=99.11 E-value=1.6e-09 Score=109.21 Aligned_cols=135 Identities=24% Similarity=0.280 Sum_probs=84.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC------cccc------------------cccCceeeecCCc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS------LWQL------------------KTYDRLRLHLPKQ 87 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg------~w~~------------------~~~~~~~~~~~~~ 87 (433)
.++||+||||||+|+++|..|+++|++|+|+|+.+.+.. .+.. ..++.........
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence 368999999999999999999999999999999864421 1100 0011111111000
Q ss_pred -eeecCCCC--C--C-CCCC--CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEE
Q 013943 88 -FCELPLMG--F--P-SEFP--TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEME 159 (433)
Q Consensus 88 -~~~~~~~~--~--~-~~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~ 159 (433)
........ . + ..++ ....+..+...+.+.+.+.+++++++++|++++.++ ..+++++.+. ....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~-----~~~~~ 154 (502)
T PRK06184 82 SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTARVAGP-----AGEET 154 (502)
T ss_pred eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEEEEEeC-----CCeEE
Confidence 00000000 0 0 0001 123456677778888888899999999999998876 3455655321 01268
Q ss_pred EEeCEEEEccCCCC
Q 013943 160 YRCRWLVVATGENA 173 (433)
Q Consensus 160 ~~~d~viiAtG~~~ 173 (433)
+++|+||.|+|..|
T Consensus 155 i~a~~vVgADG~~S 168 (502)
T PRK06184 155 VRARYLVGADGGRS 168 (502)
T ss_pred EEeCEEEECCCCch
Confidence 99999999999765
No 120
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.10 E-value=6.1e-10 Score=109.35 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=84.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC-------------CC--------------ccccc------ccCc
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCI-------------AS--------------LWQLK------TYDR 79 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~-------------gg--------------~w~~~------~~~~ 79 (433)
.+||+|||||++|+++|..|+++|++|+|+|+.+.. +. .|..- .+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999997621 00 01100 0001
Q ss_pred eeeecCCce--eecCCCCCC-CCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCce
Q 013943 80 LRLHLPKQF--CELPLMGFP-SEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVE 156 (433)
Q Consensus 80 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~ 156 (433)
+........ ..+...... ........+..+.+.+.+.+.+.++++++++++++++.++ +.|+|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g------- 152 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLTLADG------- 152 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEEECCC-------
Confidence 111000000 011100000 0001123456777777777777788999999999998776 4577877765
Q ss_pred eEEEEeCEEEEccCCCCC
Q 013943 157 EMEYRCRWLVVATGENAE 174 (433)
Q Consensus 157 ~~~~~~d~viiAtG~~~~ 174 (433)
.++++|.||.|+|.++.
T Consensus 153 -~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 153 -RQLRAPLVVAADGANSA 169 (405)
T ss_pred -CEEEeCEEEEecCCCch
Confidence 67999999999997663
No 121
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.10 E-value=1.3e-09 Score=106.40 Aligned_cols=129 Identities=21% Similarity=0.198 Sum_probs=85.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccC----ceee-----ecCCceeec--CCCCCCCCCC-C
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYD----RLRL-----HLPKQFCEL--PLMGFPSEFP-T 102 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~----~~~~-----~~~~~~~~~--~~~~~~~~~~-~ 102 (433)
||+|||||++|+++|..|++.|++|+|+|+.+..++.+....+. .+.. ........+ +........+ .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 79999999999999999999999999999998776532221111 0100 000000000 1000000001 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 103 YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
...+.++.+++.+.+.+.+++++ .++|+.+....+ ..+.|++.++ ..++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~~~~v~~~~g--------~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGV-ALSTVYCAGG--------QRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-ceeEEEeCCC--------CEEEeCEEEECCCCch
Confidence 25788899999998888888764 567888877632 5677777765 6899999999999654
No 122
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.09 E-value=1.2e-09 Score=107.93 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=84.2
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC----CCccccc--------------ccCceeeecCCce-eec
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCI----ASLWQLK--------------TYDRLRLHLPKQF-CEL 91 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~----gg~w~~~--------------~~~~~~~~~~~~~-~~~ 91 (433)
-..|||+||||||+|+++|..|++.|++|+++|+.... |+..... ....+.+..+... ..+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~ 116 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 116 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEe
Confidence 44589999999999999999999999999999997521 1110000 0111111111110 011
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCC-CCeEEEEEeecC-cCCCceeEEEEeCEEEEcc
Q 013943 92 PLMGFPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDAT-IRFWRVKTTVGG-QKCGVEEMEYRCRWLVVAT 169 (433)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~-~~~~~v~~~~g~-~~~~~~~~~~~~d~viiAt 169 (433)
.....+..+-....+..+..+|.+.+.+.|++++.+ ++++++...+ .+.+.|++.+.. ....++..++++|.||.|+
T Consensus 117 ~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD 195 (450)
T PLN00093 117 GKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD 195 (450)
T ss_pred cccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence 100000001112588899999999999999998765 5777765322 134556554310 0001223689999999999
Q ss_pred CCCC
Q 013943 170 GENA 173 (433)
Q Consensus 170 G~~~ 173 (433)
|..+
T Consensus 196 G~~S 199 (450)
T PLN00093 196 GANS 199 (450)
T ss_pred Ccch
Confidence 9654
No 123
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.08 E-value=1.4e-09 Score=105.60 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=85.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC-------C----------------Ccccc-----cccCceeeec
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCI-------A----------------SLWQL-----KTYDRLRLHL 84 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~-------g----------------g~w~~-----~~~~~~~~~~ 84 (433)
|+||+|||||++|+++|..|++.|++|+|+|+.+.. + |.|.. ..+..+....
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 689999999999999999999999999999986311 1 11211 0111121111
Q ss_pred CCc--eeecCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC-CcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEE
Q 013943 85 PKQ--FCELPLMGFPSEFPTYPSKQQFVDYLEAYAKRFE-IRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYR 161 (433)
Q Consensus 85 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 161 (433)
+.. ...+... ......-.+.+.++...+.+.+.+.+ ++++++++++++..++ +.+++++.+ .+++
T Consensus 81 ~~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~---------~~~~ 148 (374)
T PRK06617 81 NKASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIKFDD---------KQIK 148 (374)
T ss_pred CCCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEEEcC---------CEEe
Confidence 111 1111110 00011112468888888888887775 7788999999998776 456677653 3799
Q ss_pred eCEEEEccCCCCCC
Q 013943 162 CRWLVVATGENAEA 175 (433)
Q Consensus 162 ~d~viiAtG~~~~p 175 (433)
+|.||.|.|..|.-
T Consensus 149 adlvIgADG~~S~v 162 (374)
T PRK06617 149 CNLLIICDGANSKV 162 (374)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999976643
No 124
>PRK11445 putative oxidoreductase; Provisional
Probab=99.08 E-value=2.4e-09 Score=102.94 Aligned_cols=133 Identities=19% Similarity=0.242 Sum_probs=82.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC---------CcccccccC---ceeeecCCc------eeecCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA---------SLWQLKTYD---RLRLHLPKQ------FCELPLM 94 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g---------g~w~~~~~~---~~~~~~~~~------~~~~~~~ 94 (433)
||||+||||||+|+++|..|++. ++|+++|+.+..+ +....+... .+.+..+.. .......
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 68999999999999999999999 9999999987431 111110000 000000000 0000000
Q ss_pred CCCC----CC--CC-CCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEE
Q 013943 95 GFPS----EF--PT-YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVV 167 (433)
Q Consensus 95 ~~~~----~~--~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~vii 167 (433)
.+.. .+ .. ..++.++...+.+. ...+++++++++++.++..+ +.|.++..+ +++..++++|+||.
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~-----~g~~~~i~a~~vV~ 151 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWRED--DGYHVIFRA-----DGWEQHITARYLVG 151 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcC--CEEEEEEec-----CCcEEEEEeCEEEE
Confidence 0000 00 11 25788888777774 45678899999999998766 557776532 11124789999999
Q ss_pred ccCCCCC
Q 013943 168 ATGENAE 174 (433)
Q Consensus 168 AtG~~~~ 174 (433)
|+|..+.
T Consensus 152 AdG~~S~ 158 (351)
T PRK11445 152 ADGANSM 158 (351)
T ss_pred CCCCCcH
Confidence 9996553
No 125
>PRK07190 hypothetical protein; Provisional
Probab=99.08 E-value=2.9e-09 Score=106.40 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=84.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc--------------cccC----------ceeeecCCce
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL--------------KTYD----------RLRLHLPKQF 88 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~--------------~~~~----------~~~~~~~~~~ 88 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+.....-+. ..++ .........+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 489999999999999999999999999999998754211000 0000 0000000000
Q ss_pred eecCC--C-CCCC-CCC--CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEe
Q 013943 89 CELPL--M-GFPS-EFP--TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC 162 (433)
Q Consensus 89 ~~~~~--~-~~~~-~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 162 (433)
..... . ..+. ..+ .......+...+.+.+.+.+++++++++|++++.++ +.+.+.+.++ +++++
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~~~~g--------~~v~a 154 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTTLSNG--------ERIQS 154 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEEECCC--------cEEEe
Confidence 00000 0 0000 000 113456667777778888899999999999999877 4455666554 58999
Q ss_pred CEEEEccCCCC
Q 013943 163 RWLVVATGENA 173 (433)
Q Consensus 163 d~viiAtG~~~ 173 (433)
++||.|+|..+
T Consensus 155 ~~vVgADG~~S 165 (487)
T PRK07190 155 RYVIGADGSRS 165 (487)
T ss_pred CEEEECCCCCH
Confidence 99999999655
No 126
>PLN02697 lycopene epsilon cyclase
Probab=99.07 E-value=2.7e-09 Score=106.60 Aligned_cols=131 Identities=20% Similarity=0.166 Sum_probs=85.0
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC---CcccccccCceee------ecCCceeecCCCCCCCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA---SLWQLKTYDRLRL------HLPKQFCELPLMGFPSEFP 101 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g---g~w~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 101 (433)
..++||+||||||+|+++|..|++.|++|+++|+..... |.|... ...+.+ ..+.....++.........
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~ 184 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGR 184 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccC
Confidence 456999999999999999999999999999999864332 345321 111100 0000000011000000001
Q ss_pred --CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEE-EEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 102 --TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWR-VKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 102 --~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
+.+.+.++.+.+.+.+.+.++++ ++++|+.+...++ .+. +...++ ..+.++.||+|+|..+
T Consensus 185 ~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~~~vv~~~dG--------~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 185 AYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD--GLRLVACEDG--------RVIPCRLATVASGAAS 248 (529)
T ss_pred cccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--cEEEEEEcCC--------cEEECCEEEECCCcCh
Confidence 12578889999999888888886 6779999887653 333 344444 6799999999999766
No 127
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.07 E-value=2.3e-09 Score=103.85 Aligned_cols=121 Identities=25% Similarity=0.279 Sum_probs=83.4
Q ss_pred CeEEECCChHHHHHHHHH--HHcCCCEEEEecCCCC--CC--ccccc-------------ccCceeeecCCceeecCCCC
Q 013943 35 GPVIVGAGPSGLATAACL--KERGIPSILLERSNCI--AS--LWQLK-------------TYDRLRLHLPKQFCELPLMG 95 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L--~~~g~~v~iie~~~~~--gg--~w~~~-------------~~~~~~~~~~~~~~~~~~~~ 95 (433)
||+|||||+||+++|.+| .+.|.+|+++|+.... .. .|... .++...+..+.........+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999 6778999999998765 21 23221 11111111111100000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 96 FPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
-..+.+.++.+++.+.+. .+..+.++++|++++..+ ..+.+++.+| .+++++.||.|+|.
T Consensus 81 -----Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~~~v~~~~g--------~~i~a~~VvDa~g~ 140 (374)
T PF05834_consen 81 -----YCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETG--DGVLVVLADG--------RTIRARVVVDARGP 140 (374)
T ss_pred -----eEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecC--ceEEEEECCC--------CEEEeeEEEECCCc
Confidence 013588999999999888 444578889999999887 4566788876 69999999999994
No 128
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.07 E-value=1.6e-09 Score=105.83 Aligned_cols=131 Identities=21% Similarity=0.258 Sum_probs=83.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC------------------ccccc-----ccCceeeecCCc-e
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS------------------LWQLK-----TYDRLRLHLPKQ-F 88 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg------------------~w~~~-----~~~~~~~~~~~~-~ 88 (433)
.+||+|||||++|+++|..|++.|++|+|+|+.+.... .|..- .+..+....... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 47999999999999999999999999999999864321 11110 011111111100 0
Q ss_pred -----eecCCCCCCCCCCCC-CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEe
Q 013943 89 -----CELPLMGFPSEFPTY-PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC 162 (433)
Q Consensus 89 -----~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 162 (433)
..+..........++ ..+.++...+.+.+.+.+...+++++|++++..+ +.|+++++++ ..+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~~~g--------~~~~a 156 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVTLADG--------TTLSA 156 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEEECCC--------CEEEE
Confidence 000000000011112 4567777778777776643338899999998766 5677877765 67999
Q ss_pred CEEEEccCCCC
Q 013943 163 RWLVVATGENA 173 (433)
Q Consensus 163 d~viiAtG~~~ 173 (433)
|.||.|+|..+
T Consensus 157 ~~vI~AdG~~S 167 (388)
T PRK07494 157 RLVVGADGRNS 167 (388)
T ss_pred eEEEEecCCCc
Confidence 99999999755
No 129
>PRK07045 putative monooxygenase; Reviewed
Probab=99.07 E-value=2.6e-09 Score=104.24 Aligned_cols=134 Identities=24% Similarity=0.208 Sum_probs=85.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC---C---cccc-------------c------ccCceeeecCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA---S---LWQL-------------K------TYDRLRLHLPK 86 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g---g---~w~~-------------~------~~~~~~~~~~~ 86 (433)
..+||+||||||+|+++|..|++.|++|+|+|+.+... + .+.. . ....+......
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 45799999999999999999999999999999987541 1 1110 0 00111111000
Q ss_pred c-eeecCCCCCCC-CCCCCCCHHHHHHHHHHHHHH-cCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeC
Q 013943 87 Q-FCELPLMGFPS-EFPTYPSKQQFVDYLEAYAKR-FEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCR 163 (433)
Q Consensus 87 ~-~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d 163 (433)
. ...+....... .......+.++.+.+.+.+.. .+++++++++|++++..++...+.|++.+| .++.+|
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--------~~~~~~ 155 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDG--------ERVAPT 155 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCC--------CEEECC
Confidence 0 00011000000 000113566777777776654 468899999999999876533456777665 589999
Q ss_pred EEEEccCCCC
Q 013943 164 WLVVATGENA 173 (433)
Q Consensus 164 ~viiAtG~~~ 173 (433)
.||.|+|..|
T Consensus 156 ~vIgADG~~S 165 (388)
T PRK07045 156 VLVGADGARS 165 (388)
T ss_pred EEEECCCCCh
Confidence 9999999765
No 130
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.06 E-value=1.6e-09 Score=105.96 Aligned_cols=133 Identities=18% Similarity=0.223 Sum_probs=84.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC----C---------------------Cccccc------ccCce
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCI----A---------------------SLWQLK------TYDRL 80 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~----g---------------------g~w~~~------~~~~~ 80 (433)
..|||+|||||++|+++|..|++.|++|+|+|+.+.. + |.|... .+..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 3589999999999999999999999999999997521 1 111110 00001
Q ss_pred eee-cCCceeecCCCCCCCCCCC-CCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCcee
Q 013943 81 RLH-LPKQFCELPLMGFPSEFPT-YPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEE 157 (433)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~ 157 (433)
... .......+..........+ ...+..+...+.+.+.+. +++++++++|+++...+ ..+.|++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g-------- 153 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD--DGWELTLADG-------- 153 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEEEEECCC--------
Confidence 000 0000000110000000011 145677777787777766 88889999999998766 4577777665
Q ss_pred EEEEeCEEEEccCCCCC
Q 013943 158 MEYRCRWLVVATGENAE 174 (433)
Q Consensus 158 ~~~~~d~viiAtG~~~~ 174 (433)
.++++|.||.|+|..+.
T Consensus 154 ~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 154 EEIQAKLVIGADGANSQ 170 (391)
T ss_pred CEEEeCEEEEeCCCCch
Confidence 58999999999997653
No 131
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.04 E-value=3e-09 Score=104.48 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=80.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecC-CC--CC---------------------Cccccc------ccCceee
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERS-NC--IA---------------------SLWQLK------TYDRLRL 82 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~-~~--~g---------------------g~w~~~------~~~~~~~ 82 (433)
.+||+||||||+|+++|..|++.|++|+|+|+. +. ++ |.|..- .+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 589999999999999999999999999999986 21 11 111110 0001111
Q ss_pred ecCCc--eeecCCCCCCC-CCCCCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeE
Q 013943 83 HLPKQ--FCELPLMGFPS-EFPTYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEM 158 (433)
Q Consensus 83 ~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~ 158 (433)
..... ...+....... .+........+...+.+.+.+. +++++++++|++++.++ ..++|++.++ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~v~~~~g--------~ 153 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAWLTLDNG--------Q 153 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEEEEECCC--------C
Confidence 10100 00011000000 0001123455666666666554 68889999999998776 4566777765 6
Q ss_pred EEEeCEEEEccCCCC
Q 013943 159 EYRCRWLVVATGENA 173 (433)
Q Consensus 159 ~~~~d~viiAtG~~~ 173 (433)
++++|.||.|.|..+
T Consensus 154 ~~~a~lvIgADG~~S 168 (405)
T PRK08850 154 ALTAKLVVGADGANS 168 (405)
T ss_pred EEEeCEEEEeCCCCC
Confidence 899999999999655
No 132
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.04 E-value=7.4e-10 Score=94.88 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=82.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC-ccccc-ccCceeeecCCcee-ecCCCCCCCCCCCC--CCH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS-LWQLK-TYDRLRLHLPKQFC-ELPLMGFPSEFPTY--PSK 106 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg-~w~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~ 106 (433)
..+||+||||||+|++||+.|++.|++|+++|++..+|| .|.-. .++.+....+.... .--..++.+.-.++ .+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~ 95 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS 95 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence 358999999999999999999999999999999988775 67653 56666666554321 11112222211111 367
Q ss_pred HHHHHHHHHHHHHcCCcceecceEEEEEEeCCCC--eEEEEEeecCcC-CCceeEEEEeCEEEEccCCC
Q 013943 107 QQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIR--FWRVKTTVGGQK-CGVEEMEYRCRWLVVATGEN 172 (433)
Q Consensus 107 ~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~--~~~v~~~~g~~~-~~~~~~~~~~d~viiAtG~~ 172 (433)
.++...|...+-+.++.++..+.|+++-..++.. .+.+....-... -...+..++++.||-|||+-
T Consensus 96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 7777777776667899999999999988766311 111222100000 02335799999999999963
No 133
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.03 E-value=3.5e-09 Score=103.15 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=80.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC----C---C-----cccc--------cccCce-----------e
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCI----A---S-----LWQL--------KTYDRL-----------R 81 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~----g---g-----~w~~--------~~~~~~-----------~ 81 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. . + .+.. ..++.+ .
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 589999999999999999999999999999987411 0 1 0000 001111 0
Q ss_pred ee-cCCceeecCCCCCCCCCCCC-CCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeE
Q 013943 82 LH-LPKQFCELPLMGFPSEFPTY-PSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEM 158 (433)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~ 158 (433)
.. .......+..........++ .....+...+.+.+.+. +++++++++|++++.++ +.++++++++ .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~v~~~~g--------~ 152 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNRVTLESG--------A 152 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEEEEECCC--------C
Confidence 00 00000001100000000011 22334555555544443 68899999999998876 4567888776 6
Q ss_pred EEEeCEEEEccCCCCCC
Q 013943 159 EYRCRWLVVATGENAEA 175 (433)
Q Consensus 159 ~~~~d~viiAtG~~~~p 175 (433)
++++|.||.|+|..|.-
T Consensus 153 ~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 153 EIEAKWVIGADGANSQV 169 (384)
T ss_pred EEEeeEEEEecCCCchh
Confidence 89999999999976543
No 134
>PRK05868 hypothetical protein; Validated
Probab=99.03 E-value=4.8e-09 Score=101.59 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=81.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc-------------------ccc-----cccCceeeecCCce
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL-------------------WQL-----KTYDRLRLHLPKQF 88 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~-------------------w~~-----~~~~~~~~~~~~~~ 88 (433)
|+||+|||||++|+++|..|++.|++|+|+|+.+..... |.. .....+....+...
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 679999999999999999999999999999998754310 000 00111111111110
Q ss_pred e-ecCCC--CCCCCC--CC-CCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEe
Q 013943 89 C-ELPLM--GFPSEF--PT-YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC 162 (433)
Q Consensus 89 ~-~~~~~--~~~~~~--~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 162 (433)
. ..... +..... +. ...+.++.+.+.+.+ ..+++++++++|++++.++ +.+++++.++ .++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~~~--~~v~v~~~dg--------~~~~a 149 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQDDG--DSVRVTFERA--------AAREF 149 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEecC--CeEEEEECCC--------CeEEe
Confidence 0 00000 000000 00 123455555544322 3478899999999998765 5677888776 57899
Q ss_pred CEEEEccCCCCCC
Q 013943 163 RWLVVATGENAEA 175 (433)
Q Consensus 163 d~viiAtG~~~~p 175 (433)
|.||.|.|..|.-
T Consensus 150 dlvIgADG~~S~v 162 (372)
T PRK05868 150 DLVIGADGLHSNV 162 (372)
T ss_pred CEEEECCCCCchH
Confidence 9999999976643
No 135
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.03 E-value=1.9e-09 Score=105.08 Aligned_cols=129 Identities=21% Similarity=0.223 Sum_probs=84.4
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC--------cccc-----------cccCcee-----------eec
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS--------LWQL-----------KTYDRLR-----------LHL 84 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg--------~w~~-----------~~~~~~~-----------~~~ 84 (433)
||+|||||++|+++|..|+++|++|+|+|+.+..+. .... ...+.+. ...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999975321 0000 0000110 000
Q ss_pred CCc--eeecCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcC-CcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEE
Q 013943 85 PKQ--FCELPLMGFPSE-FPTYPSKQQFVDYLEAYAKRFE-IRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEY 160 (433)
Q Consensus 85 ~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~ 160 (433)
... ...+........ ....+.+.++...+.+.+.+.+ ++++++++|++++..+ +.+.+++.++ ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~~~~g--------~~~ 150 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELTLDDG--------QQL 150 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEEECCC--------CEE
Confidence 000 000100000000 0112467788888888888877 8899999999998766 5667777665 579
Q ss_pred EeCEEEEccCCCC
Q 013943 161 RCRWLVVATGENA 173 (433)
Q Consensus 161 ~~d~viiAtG~~~ 173 (433)
.+|.||.|+|..+
T Consensus 151 ~~~~vi~adG~~S 163 (385)
T TIGR01988 151 RARLLVGADGANS 163 (385)
T ss_pred EeeEEEEeCCCCC
Confidence 9999999999755
No 136
>PRK06753 hypothetical protein; Provisional
Probab=99.03 E-value=3.2e-09 Score=103.09 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=81.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc-------------------ccc-----cccCceeeecCCceee
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL-------------------WQL-----KTYDRLRLHLPKQFCE 90 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~-------------------w~~-----~~~~~~~~~~~~~~~~ 90 (433)
+|+|||||++|+++|..|++.|++|+|+|+.+.+... |.. .....+....+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 6999999999999999999999999999998754311 000 00111111111100 0
Q ss_pred cCCCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEcc
Q 013943 91 LPLMGFPSE-FPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVAT 169 (433)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAt 169 (433)
+...++... ......+.++.+.+.+.+. ..+++++++|++++.++ +.+++++.++ ..+.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~~~~vigad 148 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENET--DKVTIHFADG--------ESEAFDLCIGAD 148 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecC--CcEEEEECCC--------CEEecCEEEECC
Confidence 000111100 1112467777777776543 34689999999998765 5677887775 678999999999
Q ss_pred CCCC
Q 013943 170 GENA 173 (433)
Q Consensus 170 G~~~ 173 (433)
|..|
T Consensus 149 G~~S 152 (373)
T PRK06753 149 GIHS 152 (373)
T ss_pred Ccch
Confidence 9765
No 137
>PRK09126 hypothetical protein; Provisional
Probab=99.02 E-value=3.7e-09 Score=103.39 Aligned_cols=131 Identities=22% Similarity=0.226 Sum_probs=80.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-------C----cccc--------cccCce-----------ee
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA-------S----LWQL--------KTYDRL-----------RL 82 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g-------g----~w~~--------~~~~~~-----------~~ 82 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+... | .+.. ..++.+ ..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 5899999999999999999999999999999986421 1 0000 000000 00
Q ss_pred ecCCc--eeecCCCCCCCCCCCC-CCHHHHHHHHHHHHH-HcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeE
Q 013943 83 HLPKQ--FCELPLMGFPSEFPTY-PSKQQFVDYLEAYAK-RFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEM 158 (433)
Q Consensus 83 ~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~ 158 (433)
..... ...+..........++ ..+..+.+.+.+.+. ..+++++++++|++++..+ +.+.|++.++ .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~v~~~~g--------~ 152 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQVTLANG--------R 152 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEEEEEcCC--------C
Confidence 00000 0001000000000111 244555555555443 3588999999999998765 4567777665 6
Q ss_pred EEEeCEEEEccCCCC
Q 013943 159 EYRCRWLVVATGENA 173 (433)
Q Consensus 159 ~~~~d~viiAtG~~~ 173 (433)
++.+|+||.|+|..+
T Consensus 153 ~~~a~~vI~AdG~~S 167 (392)
T PRK09126 153 RLTARLLVAADSRFS 167 (392)
T ss_pred EEEeCEEEEeCCCCc
Confidence 899999999999654
No 138
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.02 E-value=2e-09 Score=105.38 Aligned_cols=133 Identities=23% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc------ccc--------cccC----------ceeeecC---
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL------WQL--------KTYD----------RLRLHLP--- 85 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~------w~~--------~~~~----------~~~~~~~--- 85 (433)
..||+|||||++|+++|..|++.|++|+|+|+.+.++.. +.. ...+ .+.....
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 478999999999999999999999999999998754311 000 0000 0000000
Q ss_pred CceeecCCCC-CCCCC--C-CCCCHHHHHHHHHHHHHHcC-CcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEE
Q 013943 86 KQFCELPLMG-FPSEF--P-TYPSKQQFVDYLEAYAKRFE-IRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEY 160 (433)
Q Consensus 86 ~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~l~~~~~~~~-l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~ 160 (433)
.....++... +...+ + ....+.++.+.+.+.+.+.+ ++++++++|++++.++ +.+.+++.++ .++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~~~~g--------~~~ 153 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVTVFDQQG--------NRW 153 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceEEEEcCC--------CEE
Confidence 0000000000 00000 1 12467778888888777664 8899999999998765 4567777665 579
Q ss_pred EeCEEEEccCCCCCC
Q 013943 161 RCRWLVVATGENAEA 175 (433)
Q Consensus 161 ~~d~viiAtG~~~~p 175 (433)
.+|.||.|+|.++..
T Consensus 154 ~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 154 TGDALIGCDGVKSVV 168 (396)
T ss_pred ecCEEEECCCcChHH
Confidence 999999999976543
No 139
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.02 E-value=2.8e-09 Score=105.57 Aligned_cols=134 Identities=16% Similarity=0.254 Sum_probs=84.0
Q ss_pred CCeEEECCChHHHHHHHHHHH----cCCCEEEEecCC--CCC--------C---------------------ccccc---
Q 013943 34 PGPVIVGAGPSGLATAACLKE----RGIPSILLERSN--CIA--------S---------------------LWQLK--- 75 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~----~g~~v~iie~~~--~~g--------g---------------------~w~~~--- 75 (433)
|||+||||||+|+++|..|++ .|++|+|||+.+ ... + .|..-
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999998 799999999943 211 0 11110
Q ss_pred ---ccCceeeecCCc--eeecCCCCCCCCCCCCCCHHHHHHHHHHHHHHcC---CcceecceEEEEEEe-----CCCCeE
Q 013943 76 ---TYDRLRLHLPKQ--FCELPLMGFPSEFPTYPSKQQFVDYLEAYAKRFE---IRPRFNETVSQAEYD-----ATIRFW 142 (433)
Q Consensus 76 ---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---l~~~~~~~v~~v~~~-----~~~~~~ 142 (433)
.+..+....... ...+..............+..+...+.+.+.+.+ ++++++++|++++.. ++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 000111100000 0111110000000112467778888888777764 889999999999763 222456
Q ss_pred EEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 143 RVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 143 ~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
+|++.+| +++++|+||.|.|..|.-
T Consensus 161 ~v~~~~g--------~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 161 HITLSDG--------QVLYTKLLIGADGSNSNV 185 (437)
T ss_pred EEEEcCC--------CEEEeeEEEEecCCCChh
Confidence 7777776 689999999999976533
No 140
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.02 E-value=4.4e-09 Score=102.68 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=84.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC---cccccc----------cCceee-------e-cCCceeec
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS---LWQLKT----------YDRLRL-------H-LPKQFCEL 91 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg---~w~~~~----------~~~~~~-------~-~~~~~~~~ 91 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+.... .|.... ...+.+ . .+...+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 47999999999999999999999999999999875421 222100 000000 0 00000000
Q ss_pred --------CCCCCCCCCCC---CCCHHHHHHHHHHHHHHcC-CcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEE
Q 013943 92 --------PLMGFPSEFPT---YPSKQQFVDYLEAYAKRFE-IRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEME 159 (433)
Q Consensus 92 --------~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~-l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~ 159 (433)
....+....+. ...+.++.+.+.+.+.+.+ ++++ +++|++++.++ ..+.+++.++ .+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~~~~g--------~~ 153 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLTLADG--------QV 153 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEEECCC--------CE
Confidence 00000001111 1357788888888888876 7777 88999988765 4577777765 57
Q ss_pred EEeCEEEEccCCCCC
Q 013943 160 YRCRWLVVATGENAE 174 (433)
Q Consensus 160 ~~~d~viiAtG~~~~ 174 (433)
+.+|.||.|+|.++.
T Consensus 154 ~~a~~vI~adG~~S~ 168 (388)
T PRK07608 154 LRADLVVGADGAHSW 168 (388)
T ss_pred EEeeEEEEeCCCCch
Confidence 999999999997653
No 141
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.00 E-value=3e-09 Score=103.66 Aligned_cols=129 Identities=22% Similarity=0.221 Sum_probs=83.5
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCC----------cccc--------cccCce----------eeecC
Q 013943 35 GPVIVGAGPSGLATAACLKERG-IPSILLERSNCIAS----------LWQL--------KTYDRL----------RLHLP 85 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g-~~v~iie~~~~~gg----------~w~~--------~~~~~~----------~~~~~ 85 (433)
||+||||||+|+++|..|+++| ++|+|+|+.+...- .+.. ...+.+ .....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999864311 0000 000000 00000
Q ss_pred C--ceeecCCCCCCCCCCCC-CCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEE
Q 013943 86 K--QFCELPLMGFPSEFPTY-PSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYR 161 (433)
Q Consensus 86 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 161 (433)
. ....+....+......+ ..+.++.+.+.+.+.+. +++++++++|++++.++ ..+++++.++ ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~g--------~~~~ 150 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVTLDNG--------QQLR 150 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEEECCC--------CEEE
Confidence 0 00000000000000112 46678888888888774 89999999999998766 4577777665 5799
Q ss_pred eCEEEEccCCCC
Q 013943 162 CRWLVVATGENA 173 (433)
Q Consensus 162 ~d~viiAtG~~~ 173 (433)
+|.||.|.|..+
T Consensus 151 ad~vV~AdG~~S 162 (382)
T TIGR01984 151 AKLLIAADGANS 162 (382)
T ss_pred eeEEEEecCCCh
Confidence 999999999765
No 142
>PRK06185 hypothetical protein; Provisional
Probab=99.00 E-value=5.5e-09 Score=102.70 Aligned_cols=134 Identities=21% Similarity=0.311 Sum_probs=83.3
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-----C--------------ccccc------ccCceeeecCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA-----S--------------LWQLK------TYDRLRLHLPK 86 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g-----g--------------~w~~~------~~~~~~~~~~~ 86 (433)
..+||+|||||++|+++|..|++.|++|+|+|+.+... . .|..- .+..+......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 45899999999999999999999999999999975321 1 11110 00111111111
Q ss_pred cee---ecCCCCCCCCCCCCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEe--ecCcCCCceeEEE
Q 013943 87 QFC---ELPLMGFPSEFPTYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTT--VGGQKCGVEEMEY 160 (433)
Q Consensus 87 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~--~g~~~~~~~~~~~ 160 (433)
... .+.....+..+..+....++.+.+.+.+.+. +++++++++|+++..+++ ....+.+. ++ ...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~-~v~~v~~~~~~g-------~~~i 156 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGG-RVTGVRARTPDG-------PGEI 156 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC-EEEEEEEEcCCC-------cEEE
Confidence 100 1111111111112346677888888877665 788999999999987763 22223332 32 2479
Q ss_pred EeCEEEEccCCCC
Q 013943 161 RCRWLVVATGENA 173 (433)
Q Consensus 161 ~~d~viiAtG~~~ 173 (433)
++|.||.|+|.++
T Consensus 157 ~a~~vI~AdG~~S 169 (407)
T PRK06185 157 RADLVVGADGRHS 169 (407)
T ss_pred EeCEEEECCCCch
Confidence 9999999999765
No 143
>PRK07588 hypothetical protein; Provisional
Probab=99.00 E-value=4.7e-09 Score=102.58 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=83.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC--C----ccccc------------------ccCceeeecCCc--
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA--S----LWQLK------------------TYDRLRLHLPKQ-- 87 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g--g----~w~~~------------------~~~~~~~~~~~~-- 87 (433)
.||+|||||++|+++|..|++.|++|+|+|+.+... | .|... ....+.......
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 379999999999999999999999999999987432 1 11110 011111111110
Q ss_pred eeecCCCCCCCCCC-C--CCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCE
Q 013943 88 FCELPLMGFPSEFP-T--YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRW 164 (433)
Q Consensus 88 ~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~ 164 (433)
...+....+..... . ...+.++...+.+.+. .+++++++++|++++.++ +.+++++.+| ..+++|.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~~d~ 149 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDEHR--DGVRVTFERG--------TPRDFDL 149 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEEEEECCC--------CEEEeCE
Confidence 11111111111111 1 2356677776665443 368899999999998876 5677888776 5689999
Q ss_pred EEEccCCCCCCc
Q 013943 165 LVVATGENAEAV 176 (433)
Q Consensus 165 viiAtG~~~~p~ 176 (433)
||.|.|..|.-+
T Consensus 150 vIgADG~~S~vR 161 (391)
T PRK07588 150 VIGADGLHSHVR 161 (391)
T ss_pred EEECCCCCccch
Confidence 999999766443
No 144
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.99 E-value=4.6e-09 Score=102.80 Aligned_cols=132 Identities=20% Similarity=0.159 Sum_probs=81.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCC-----C------Ccccc--------cccCce---------
Q 013943 32 CVPGPVIVGAGPSGLATAACLKER---GIPSILLERSNCI-----A------SLWQL--------KTYDRL--------- 80 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~---g~~v~iie~~~~~-----g------g~w~~--------~~~~~~--------- 80 (433)
.++||+||||||+|+++|..|+++ |++|+|+|+.... + +.+.. ..++.+
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH 81 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence 468999999999999999999998 9999999995311 0 01100 001110
Q ss_pred -eeecCCce--eecCCCCCCCCCCC-CCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCc
Q 013943 81 -RLHLPKQF--CELPLMGFPSEFPT-YPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGV 155 (433)
Q Consensus 81 -~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~ 155 (433)
........ ..+....+.....+ ...+.++...+.+.+... +++++++++|+++...+ +.|.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~v~~~~g------ 153 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVRVTLDDG------ 153 (395)
T ss_pred EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEEEEECCC------
Confidence 00000000 00000000000011 134556666666666553 68889999999998765 5677777665
Q ss_pred eeEEEEeCEEEEccCCCC
Q 013943 156 EEMEYRCRWLVVATGENA 173 (433)
Q Consensus 156 ~~~~~~~d~viiAtG~~~ 173 (433)
..+.+|.||.|+|..+
T Consensus 154 --~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 154 --ETLTGRLLVAADGSHS 169 (395)
T ss_pred --CEEEeCEEEEecCCCh
Confidence 5789999999999654
No 145
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.99 E-value=9.3e-09 Score=104.86 Aligned_cols=135 Identities=21% Similarity=0.338 Sum_probs=84.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc--------------cccCc----------eeee-cCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL--------------KTYDR----------LRLH-LPK 86 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~--------------~~~~~----------~~~~-~~~ 86 (433)
..+||+||||||+|+++|..|.+.|++|+|||+.+......+. ...+. .... ...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 5689999999999999999999999999999999754321100 00000 0000 001
Q ss_pred ceeecCCCCCC-CCCCCC--CCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEe
Q 013943 87 QFCELPLMGFP-SEFPTY--PSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC 162 (433)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 162 (433)
....+...+.. ..++.+ .....+..+|.+.+.+. +++++++++|++++.++ ..++++..+. ++ ..++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~----~g-~~~i~a 174 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETP----DG-PYTLEA 174 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECC----CC-cEEEEe
Confidence 11111111100 111111 35667778888877775 68899999999998876 4555554421 11 257999
Q ss_pred CEEEEccCCCC
Q 013943 163 RWLVVATGENA 173 (433)
Q Consensus 163 d~viiAtG~~~ 173 (433)
|+||.|+|..+
T Consensus 175 d~vVgADG~~S 185 (547)
T PRK08132 175 DWVIACDGARS 185 (547)
T ss_pred CEEEECCCCCc
Confidence 99999999655
No 146
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.99 E-value=8.5e-09 Score=100.69 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=81.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----Cccccc--------------ccCceeeecCCcee-ecCCC
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA----SLWQLK--------------TYDRLRLHLPKQFC-ELPLM 94 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g----g~w~~~--------------~~~~~~~~~~~~~~-~~~~~ 94 (433)
+||+||||||+|+++|..|++.|++|+++|+....+ +..... .+..+....+.... .+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999975432 111000 11111111211100 00100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeC-CCCeEEEEEeecC-cCCCceeEEEEeCEEEEccCCC
Q 013943 95 GFPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDA-TIRFWRVKTTVGG-QKCGVEEMEYRCRWLVVATGEN 172 (433)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~-~~~~~~v~~~~g~-~~~~~~~~~~~~d~viiAtG~~ 172 (433)
.....+.....+..+..++.+.+.+.+++++.+ +++.+.... ....+.|+..... ....++..+++++.||.|+|..
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLING-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGAN 159 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcc
Confidence 000011123678888899999999999998776 476665322 1234555542110 0001223589999999999954
Q ss_pred C
Q 013943 173 A 173 (433)
Q Consensus 173 ~ 173 (433)
+
T Consensus 160 S 160 (398)
T TIGR02028 160 S 160 (398)
T ss_pred h
Confidence 3
No 147
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.98 E-value=9.2e-09 Score=100.52 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=81.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC---C----C--------------cccc-----cccCceeeecCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCI---A----S--------------LWQL-----KTYDRLRLHLPK 86 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~---g----g--------------~w~~-----~~~~~~~~~~~~ 86 (433)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. + + .|.. .....+......
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 479999999999999999999999999999998741 1 1 1100 001111111111
Q ss_pred ceeecCCCCCCCCC--CC--CCCHHHHHHHHHHHHHHcCCcceecceEEEEEE-eCCCCeEEEEEeecCcCCCceeEEEE
Q 013943 87 QFCELPLMGFPSEF--PT--YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEY-DATIRFWRVKTTVGGQKCGVEEMEYR 161 (433)
Q Consensus 87 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~-~~~~~~~~v~~~~g~~~~~~~~~~~~ 161 (433)
.... .+++... .. .....++.+.+.+.+...++++++++++++++. ++ ....|+... +++..+++
T Consensus 82 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~--~~~~V~~~~-----~G~~~~i~ 151 (392)
T PRK08243 82 RRHR---IDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDS--DRPYVTYEK-----DGEEHRLD 151 (392)
T ss_pred EEEE---eccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCC--CceEEEEEc-----CCeEEEEE
Confidence 1111 1111111 00 113455566666666777899999999999876 33 333455531 22245799
Q ss_pred eCEEEEccCCCCCC
Q 013943 162 CRWLVVATGENAEA 175 (433)
Q Consensus 162 ~d~viiAtG~~~~p 175 (433)
+|+||.|.|..|..
T Consensus 152 ad~vVgADG~~S~v 165 (392)
T PRK08243 152 CDFIAGCDGFHGVS 165 (392)
T ss_pred eCEEEECCCCCCch
Confidence 99999999976643
No 148
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.98 E-value=5.2e-09 Score=94.64 Aligned_cols=143 Identities=22% Similarity=0.286 Sum_probs=99.7
Q ss_pred CccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC--C---------------------------ccccc-ccC
Q 013943 29 RCICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA--S---------------------------LWQLK-TYD 78 (433)
Q Consensus 29 ~~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g--g---------------------------~w~~~-~~~ 78 (433)
+..+..||+|||||..|+++|++|+++|.+++++|+.+-+. | .|+.. ...
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~ 82 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEES 82 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhh
Confidence 34567899999999999999999999999999999976222 1 12210 000
Q ss_pred ceeeecCCce----------------------------------eecC-CCCCCCCC-------CCCCCHHHHHHHHHHH
Q 013943 79 RLRLHLPKQF----------------------------------CELP-LMGFPSEF-------PTYPSKQQFVDYLEAY 116 (433)
Q Consensus 79 ~~~~~~~~~~----------------------------------~~~~-~~~~~~~~-------~~~~~~~~~~~~l~~~ 116 (433)
+..+..+... -.|+ ..++++.+ .++......+..++..
T Consensus 83 g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~ 162 (399)
T KOG2820|consen 83 GVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDK 162 (399)
T ss_pred ceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHH
Confidence 0000000000 0233 44444443 4567788999999999
Q ss_pred HHHcCCcceecceEEEEEEeCCC-CeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCC
Q 013943 117 AKRFEIRPRFNETVSQAEYDATI-RFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPE 179 (433)
Q Consensus 117 ~~~~~l~~~~~~~v~~v~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~ 179 (433)
++++|+.++.+..|..+...+.. ....|.+.+| ..+.++.+|+++|+|....+|.
T Consensus 163 ~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~g--------s~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 163 ARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDG--------SIYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHcCeEEecCcceeeEeeccCCCceeEEEeccC--------CeeecceEEEEecHHHHhhcCc
Confidence 99999999999999988865432 3456777776 5799999999999987777774
No 149
>PRK06996 hypothetical protein; Provisional
Probab=98.97 E-value=7.7e-09 Score=101.24 Aligned_cols=133 Identities=20% Similarity=0.148 Sum_probs=85.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcC----CCEEEEecCCCCC---------------------CcccccccC--ceeeec
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERG----IPSILLERSNCIA---------------------SLWQLKTYD--RLRLHL 84 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g----~~v~iie~~~~~g---------------------g~w~~~~~~--~~~~~~ 84 (433)
+.+||+||||||+|+++|..|++.| ++|+++|+.+... |.|.....+ .+....
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 4589999999999999999999987 4699999975221 112221111 111110
Q ss_pred CCc--eeecCCCCCCCCCCCC-CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEE
Q 013943 85 PKQ--FCELPLMGFPSEFPTY-PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYR 161 (433)
Q Consensus 85 ~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 161 (433)
... ...+....+.....++ +.+.++...|.+.+...++++++++++++++... ..++++..++ ++ ..+++
T Consensus 90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~v~~~~~----~g-~~~i~ 162 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVTLALGTP----QG-ARTLR 162 (398)
T ss_pred CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEEEEECCC----Cc-ceEEe
Confidence 000 0011110111111122 4678888999998888898999999999997766 5677776643 11 25799
Q ss_pred eCEEEEccCC
Q 013943 162 CRWLVVATGE 171 (433)
Q Consensus 162 ~d~viiAtG~ 171 (433)
+|+||.|+|.
T Consensus 163 a~lvIgADG~ 172 (398)
T PRK06996 163 ARIAVQAEGG 172 (398)
T ss_pred eeEEEECCCC
Confidence 9999999994
No 150
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.95 E-value=3.3e-09 Score=102.13 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEE-EEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWR-VKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
.....+...+.+.+.+.|++++.+++|++++.++ ..|+ |.+.++ .+.+|.||+|+|.++.
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g---------~i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDG---------EIRADRVVLAAGAWSP 204 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTE---------EEEECEEEE--GGGHH
T ss_pred ccccchhhhhHHHHHHhhhhccccccccchhhcc--ccccccccccc---------ccccceeEecccccce
Confidence 4678899999999999999999999999999988 6677 888875 4999999999997543
No 151
>PRK07236 hypothetical protein; Provisional
Probab=98.93 E-value=1.3e-08 Score=99.19 Aligned_cols=132 Identities=21% Similarity=0.172 Sum_probs=77.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC----CC-c-cccc---------ccCceeeecCC---ceeecCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCI----AS-L-WQLK---------TYDRLRLHLPK---QFCELPL 93 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~----gg-~-w~~~---------~~~~~~~~~~~---~~~~~~~ 93 (433)
..++|+|||||++|+++|..|++.|++|+|+|+.+.. |+ . ...+ ..+......+. .+.....
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3589999999999999999999999999999998632 11 0 0000 00000000000 0000000
Q ss_pred CCCCC-CCC-CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 94 MGFPS-EFP-TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 94 ~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
..... ..+ .......+.+.+.+.+ ....++++++|++++.++ ..+++++.+| .++++|.||.|.|.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~v~~~~g--------~~~~ad~vIgADG~ 152 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDG--DRVTARFADG--------RRETADLLVGADGG 152 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEEEEECCC--------CEEEeCEEEECCCC
Confidence 00000 000 1123444444443321 134589999999998765 5677888876 68999999999997
Q ss_pred CCCC
Q 013943 172 NAEA 175 (433)
Q Consensus 172 ~~~p 175 (433)
.|..
T Consensus 153 ~S~v 156 (386)
T PRK07236 153 RSTV 156 (386)
T ss_pred CchH
Confidence 6643
No 152
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.93 E-value=1e-08 Score=100.08 Aligned_cols=128 Identities=23% Similarity=0.321 Sum_probs=84.7
Q ss_pred EEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccccc-----ccCcee------eecC---Cce----eec-------
Q 013943 37 VIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLK-----TYDRLR------LHLP---KQF----CEL------- 91 (433)
Q Consensus 37 vIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~-----~~~~~~------~~~~---~~~----~~~------- 91 (433)
+|||||++|+++|..|++.|.+|+|+|+++.+|+.+... .+.... ...+ ... ..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999998877543210 000000 0000 000 000
Q ss_pred ----CCCCCC-----CCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEe
Q 013943 92 ----PLMGFP-----SEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC 162 (433)
Q Consensus 92 ----~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 162 (433)
...++. ..++......++.+.+.+.+++.+++++++++|++++..+ ..|.+++. + ..+.+
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~~v~~~-~--------~~i~a 149 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGFGVETS-G--------GEYEA 149 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeEEEEEC-C--------cEEEc
Confidence 000000 0112223567888999999999999999999999997755 46767663 2 57899
Q ss_pred CEEEEccCCCCCC
Q 013943 163 RWLVVATGENAEA 175 (433)
Q Consensus 163 d~viiAtG~~~~p 175 (433)
|.||+|+|..+.|
T Consensus 150 d~VIlAtG~~s~p 162 (400)
T TIGR00275 150 DKVILATGGLSYP 162 (400)
T ss_pred CEEEECCCCcccC
Confidence 9999999976544
No 153
>PRK06126 hypothetical protein; Provisional
Probab=98.93 E-value=3e-08 Score=101.15 Aligned_cols=136 Identities=26% Similarity=0.257 Sum_probs=83.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc-------------------ccc---cccC------ceeeec
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL-------------------WQL---KTYD------RLRLHL 84 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~-------------------w~~---~~~~------~~~~~~ 84 (433)
.+||+||||||+|+++|..|+++|++|+|+|+.+..... |.. ...+ ......
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 589999999999999999999999999999998632210 000 0000 000000
Q ss_pred --CCceeecCC--CC----C--------CC-CCCCCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEE
Q 013943 85 --PKQFCELPL--MG----F--------PS-EFPTYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKT 146 (433)
Q Consensus 85 --~~~~~~~~~--~~----~--------~~-~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~ 146 (433)
......+.. .. + .. .......+..+...+.+.+.+. +++++++++|++++.++ +.+++++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEEEE
Confidence 000000100 00 0 00 0011235566777788777764 78999999999999876 3455555
Q ss_pred eecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 147 TVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 147 ~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
.+. .+++..++++|+||.|+|..|
T Consensus 165 ~~~---~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 165 EDL---DGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred EEC---CCCcEEEEEEEEEEecCCcch
Confidence 431 023346899999999999765
No 154
>PRK07538 hypothetical protein; Provisional
Probab=98.92 E-value=7.8e-08 Score=94.68 Aligned_cols=134 Identities=19% Similarity=0.146 Sum_probs=81.7
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----Cc--ccc--------ccc----------CceeeecCCceee
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIA----SL--WQL--------KTY----------DRLRLHLPKQFCE 90 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g----g~--w~~--------~~~----------~~~~~~~~~~~~~ 90 (433)
||+|||||++|+++|..|++.|++|+|+|+.+.+. |. +.. ... ..+....+.....
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 79999999999999999999999999999987432 10 000 000 1111111100000
Q ss_pred cCCCCCC----CCCCC-CCCHHHHHHHHHHHHHH-cCC-cceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeC
Q 013943 91 LPLMGFP----SEFPT-YPSKQQFVDYLEAYAKR-FEI-RPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCR 163 (433)
Q Consensus 91 ~~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~-~~l-~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d 163 (433)
+. .+.. ..++. .+.+.++...|.+.+.+ .+. .++++++|++++..++ .+.+.+.++. .++..++++|
T Consensus 82 ~~-~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~~~~~~~~~~---~g~~~~~~ad 155 (413)
T PRK07538 82 WS-EPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--VTVVFLGDRA---GGDLVSVRGD 155 (413)
T ss_pred ee-ccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--ceEEEEeccC---CCccceEEee
Confidence 00 0000 01111 14678888887777654 454 5899999999987764 2445544321 1224689999
Q ss_pred EEEEccCCCCC
Q 013943 164 WLVVATGENAE 174 (433)
Q Consensus 164 ~viiAtG~~~~ 174 (433)
.||.|.|..|.
T Consensus 156 lvIgADG~~S~ 166 (413)
T PRK07538 156 VLIGADGIHSA 166 (413)
T ss_pred EEEECCCCCHH
Confidence 99999997663
No 155
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.90 E-value=2.3e-08 Score=97.57 Aligned_cols=131 Identities=18% Similarity=0.181 Sum_probs=77.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC------C-Cc-ccc--------c----------ccCceeeecCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCI------A-SL-WQL--------K----------TYDRLRLHLPK 86 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~------g-g~-w~~--------~----------~~~~~~~~~~~ 86 (433)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. + +. +.. . ....+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 379999999999999999999999999999998741 1 11 100 0 01111111111
Q ss_pred ceeecCCCCCCCCCC--C--CCCHHHHHHHHHHHHHHcCCcceecceEEEEEE-eCCCCeEEEEEe-ecCcCCCceeEEE
Q 013943 87 QFCELPLMGFPSEFP--T--YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEY-DATIRFWRVKTT-VGGQKCGVEEMEY 160 (433)
Q Consensus 87 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~-~~~~~~~~v~~~-~g~~~~~~~~~~~ 160 (433)
....+ ++..... . ......+...+.+.+.+.++.++++++++.+.. +++ ...|+.. +| +...+
T Consensus 82 ~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~--~~~V~~~~~g------~~~~i 150 (390)
T TIGR02360 82 QRFRI---DLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGD--RPYVTFERDG------ERHRL 150 (390)
T ss_pred EEEEE---eccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCC--ccEEEEEECC------eEEEE
Confidence 01111 1111100 0 112345556666666667888888888877754 332 3345554 43 12478
Q ss_pred EeCEEEEccCCCCC
Q 013943 161 RCRWLVVATGENAE 174 (433)
Q Consensus 161 ~~d~viiAtG~~~~ 174 (433)
++|.||.|.|..|.
T Consensus 151 ~adlvIGADG~~S~ 164 (390)
T TIGR02360 151 DCDFIAGCDGFHGV 164 (390)
T ss_pred EeCEEEECCCCchh
Confidence 99999999997763
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.88 E-value=2.5e-08 Score=73.66 Aligned_cols=80 Identities=26% Similarity=0.321 Sum_probs=66.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHHH
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYLE 114 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (433)
+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. .-..++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~---------------------------------~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP---------------------------------GFDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST---------------------------------TSSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh---------------------------------hcCHHHHHHHH
Confidence 489999999999999999999999999999985421 12466778888
Q ss_pred HHHHHcCCcceecceEEEEEEeCCCCeEEEEEeec
Q 013943 115 AYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVG 149 (433)
Q Consensus 115 ~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g 149 (433)
+.+++.++++++++.+.+++.+++. ++|++++|
T Consensus 48 ~~l~~~gV~v~~~~~v~~i~~~~~~--~~V~~~~g 80 (80)
T PF00070_consen 48 EYLRKRGVEVHTNTKVKEIEKDGDG--VEVTLEDG 80 (80)
T ss_dssp HHHHHTTEEEEESEEEEEEEEETTS--EEEEEETS
T ss_pred HHHHHCCCEEEeCCEEEEEEEeCCE--EEEEEecC
Confidence 8899999999999999999998863 55777653
No 157
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.88 E-value=1.6e-08 Score=101.18 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=79.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC-CCCCcccccccCceee-------ecCCce----e-----ecCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSN-CIASLWQLKTYDRLRL-------HLPKQF----C-----ELPLM 94 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~-~~gg~w~~~~~~~~~~-------~~~~~~----~-----~~~~~ 94 (433)
..|||+|||||+||+++|..+++.|.+|+++|++. .+|+.-......++.. ...... . .+...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 45999999999999999999999999999999984 4543211111111100 000000 0 00000
Q ss_pred C---CCCCCC--CCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEc
Q 013943 95 G---FPSEFP--TYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVA 168 (433)
Q Consensus 95 ~---~~~~~~--~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiA 168 (433)
. -+..+. ....+..+...+.+.+... ++.+ +.+.|+.+..+++ ....|.+.+| ..+.++.||+|
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~g-rV~GV~t~dG--------~~I~Ak~VIlA 152 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENG-RVVGVVTQDG--------LEFRAKAVVLT 152 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCC-EEEEEEECCC--------CEEECCEEEEe
Confidence 0 011111 1245666777777777655 6775 4667888776553 3333666665 68999999999
Q ss_pred cCCC
Q 013943 169 TGEN 172 (433)
Q Consensus 169 tG~~ 172 (433)
||.+
T Consensus 153 TGTF 156 (618)
T PRK05192 153 TGTF 156 (618)
T ss_pred eCcc
Confidence 9954
No 158
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.87 E-value=3.4e-08 Score=96.01 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 103 YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
+.....+...+.+.+.+.+++++.+++|+++...+ +.|.|.+++ ..+.+|.||+|+|.++....+
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~---------g~~~a~~vV~A~G~~~~~l~~ 209 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADG--DGVTVTTAD---------GTYEAKKLVVSAGAWVKDLLP 209 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeEEEEeCC---------CEEEeeEEEEecCcchhhhcc
Confidence 34556667777777778899999999999998866 467777665 368999999999986554433
No 159
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.86 E-value=7.3e-08 Score=95.70 Aligned_cols=135 Identities=24% Similarity=0.196 Sum_probs=84.7
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCCc--------ccccc-------c-Ccee-------------ee-
Q 013943 35 GPVIVGAGPSGLATAACLKERG-IPSILLERSNCIASL--------WQLKT-------Y-DRLR-------------LH- 83 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g-~~v~iie~~~~~gg~--------w~~~~-------~-~~~~-------------~~- 83 (433)
||||||+|.+|+++|+.+++.| .+|+|+||.+..||. |.... . +... .+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999999876542 11110 0 0000 00
Q ss_pred ---------cC--CceeecCCCCC-------------CC-CC--CCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEe
Q 013943 84 ---------LP--KQFCELPLMGF-------------PS-EF--PTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYD 136 (433)
Q Consensus 84 ---------~~--~~~~~~~~~~~-------------~~-~~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~ 136 (433)
.+ ..|+. ....+ +. .. .+......+...+.+.+++.+++++++++|+++..+
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~ 159 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQD 159 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEEC
Confidence 00 00000 00000 00 00 011345678888999999999999999999999886
Q ss_pred CCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 137 ATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 137 ~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
++...+-+...+. ++....+.++.||+|+|.++.
T Consensus 160 ~~g~v~Gv~~~~~----~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 160 DQGTVVGVVVKGK----GKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred CCCcEEEEEEEeC----CCeEEEEecceEEEecCCCCC
Confidence 4323333433321 222346889999999997654
No 160
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.86 E-value=3.2e-08 Score=97.01 Aligned_cols=135 Identities=17% Similarity=0.207 Sum_probs=83.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC----c--ccc--------cccCc----------eeeecCCc--
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS----L--WQL--------KTYDR----------LRLHLPKQ-- 87 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg----~--w~~--------~~~~~----------~~~~~~~~-- 87 (433)
.+|+|||||++|+++|..|++.|++|+|+|+.+.+.. . +.. ...+. +.......
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 6899999999999999999999999999999875321 0 000 00000 00000000
Q ss_pred -eeecCCCCCCC--CCCCC--CCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEE
Q 013943 88 -FCELPLMGFPS--EFPTY--PSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYR 161 (433)
Q Consensus 88 -~~~~~~~~~~~--~~~~~--~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 161 (433)
........... ....+ ..+.++...|.+.+.+. +++++++++|++++.++ +.+++++.++ + ...+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~v~~~~~----~-~~~~~~ 155 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSITATIIRT----N-SVETVS 155 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceEEEEEeC----C-CCcEEe
Confidence 00000000000 00112 36788888888877654 68899999999998765 4566665432 0 025789
Q ss_pred eCEEEEccCCCCCC
Q 013943 162 CRWLVVATGENAEA 175 (433)
Q Consensus 162 ~d~viiAtG~~~~p 175 (433)
+|.||.|.|..|..
T Consensus 156 adlvIgADG~~S~v 169 (400)
T PRK06475 156 AAYLIACDGVWSML 169 (400)
T ss_pred cCEEEECCCccHhH
Confidence 99999999976643
No 161
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.84 E-value=1.7e-09 Score=106.55 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=35.4
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeee---------cCCcee-ecCC---CCCCC--C
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLH---------LPKQFC-ELPL---MGFPS--E 99 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~---------~~~~~~-~~~~---~~~~~--~ 99 (433)
||||||||++|++||+.+++.|.+|+|+|+.+.+||............. ....+. .+.. .+.+. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 7999999999999999999999999999999999987654321111000 000000 0000 00000 0
Q ss_pred C--CCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 100 F--PTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 100 ~--~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
+ ........+...+.+++.+.++++++++.|.++..+++ ....|.+.+. . ...++.++.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~-~i~~V~~~~~----~-g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGG-RITGVIVETK----S-GRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-cccccccccc----c-cccccccccccccccc
Confidence 0 01234555666777788888999999999999998763 3333444431 1 1589999999999994
No 162
>PLN02661 Putative thiazole synthesis
Probab=98.83 E-value=2.4e-08 Score=93.35 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=79.7
Q ss_pred CCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCCCC-cccccc-cCceeeecCC-ceeecCCCCCCCCCCCCC---CH
Q 013943 34 PGPVIVGAGPSGLATAACLKER-GIPSILLERSNCIAS-LWQLKT-YDRLRLHLPK-QFCELPLMGFPSEFPTYP---SK 106 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~-g~~v~iie~~~~~gg-~w~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~ 106 (433)
+||+|||||++|+++|+.|++. |++|+++|+...+|| .|.... +....+..+. .++.--..++... .++. +.
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~-dgy~vv~ha 171 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ-ENYVVIKHA 171 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC-CCeeEecch
Confidence 7999999999999999999986 899999999987765 554321 1111111110 1111111222211 1111 33
Q ss_pred HHHHHHHHHHHH-HcCCcceecceEEEEEEeCCCCeEEEEE------eecCcCCCceeEEEEeCEEEEccCC
Q 013943 107 QQFVDYLEAYAK-RFEIRPRFNETVSQAEYDATIRFWRVKT------TVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 107 ~~~~~~l~~~~~-~~~l~~~~~~~v~~v~~~~~~~~~~v~~------~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
.++...+.+.+. +.+++++.++.++++..+++ ...-+.. .++....-.+...+.++.||+|||+
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~g-rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGD-RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCC-EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 455555555443 46889999999999877653 2222221 1110000012357999999999995
No 163
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.83 E-value=3.2e-08 Score=94.49 Aligned_cols=133 Identities=19% Similarity=0.177 Sum_probs=80.3
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC--Cccccccc-------CceeeecC------Ccee----------
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIA--SLWQLKTY-------DRLRLHLP------KQFC---------- 89 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g--g~w~~~~~-------~~~~~~~~------~~~~---------- 89 (433)
||+|||+|.|||++|..|.+. ++|+|+.|.+... ..|.+.-. +....+.. ..++
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999988 9999999986332 23444210 00000000 0000
Q ss_pred ---------ecCCCCCCCCCC-------------------CCCCHHHHHHHHHHHHHH-cCCcceecceEEEEEEeCCCC
Q 013943 90 ---------ELPLMGFPSEFP-------------------TYPSKQQFVDYLEAYAKR-FEIRPRFNETVSQAEYDATIR 140 (433)
Q Consensus 90 ---------~~~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~-~~l~~~~~~~v~~v~~~~~~~ 140 (433)
.-...+|..+.. .-.++..+...|.+.+++ .++++..++.+.++-.+++.
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~- 166 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI- 166 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc-
Confidence 000112211110 114778888888888876 57888888777777666541
Q ss_pred eE-EEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 141 FW-RVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 141 ~~-~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
.+ -+.+.+. +.+...+.++.||+|||..+
T Consensus 167 ~~~Gv~~~~~----~~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 167 GVAGVLVLNR----NGELGTFRAKAVVLATGGLG 196 (518)
T ss_pred eEeEEEEecC----CCeEEEEecCeEEEecCCCc
Confidence 22 2333221 11457899999999999644
No 164
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.83 E-value=3.7e-08 Score=97.05 Aligned_cols=128 Identities=23% Similarity=0.236 Sum_probs=79.2
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCCc------ccc--------cccCce---eeecC----CceeecC
Q 013943 35 GPVIVGAGPSGLATAACLKERG-IPSILLERSNCIASL------WQL--------KTYDRL---RLHLP----KQFCELP 92 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g-~~v~iie~~~~~gg~------w~~--------~~~~~~---~~~~~----~~~~~~~ 92 (433)
+|+|||||++|+++|..|++.| ++|+|+|+.+.++.. +.. ...+.+ ....+ ..++.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 5999999999999999999998 599999998765421 110 000000 00000 0000000
Q ss_pred C--------CCCCCCCC-CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeC
Q 013943 93 L--------MGFPSEFP-TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCR 163 (433)
Q Consensus 93 ~--------~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d 163 (433)
. ..+..... ....+.++.+.+.+.+. ...++++++|++++..+ ..|++++.++ .++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~~v~~~~g--------~~~~ad 149 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQA--EEVQVLFTDG--------TEYRCD 149 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecC--CcEEEEEcCC--------CEEEee
Confidence 0 00000011 12456777776666542 23468899999998866 5588888776 579999
Q ss_pred EEEEccCCCCC
Q 013943 164 WLVVATGENAE 174 (433)
Q Consensus 164 ~viiAtG~~~~ 174 (433)
.||+|+|..|.
T Consensus 150 ~vVgADG~~S~ 160 (414)
T TIGR03219 150 LLIGADGIKSA 160 (414)
T ss_pred EEEECCCccHH
Confidence 99999997664
No 165
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.82 E-value=1e-07 Score=98.30 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=85.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCCCC------ccc-------------c---c--ccCceeeecCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKER-GIPSILLERSNCIAS------LWQ-------------L---K--TYDRLRLHLPK 86 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~-g~~v~iie~~~~~gg------~w~-------------~---~--~~~~~~~~~~~ 86 (433)
..+||+||||||+|+++|..|++. |++|+|||+.+.... .+. . . ....+....+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 468999999999999999999995 999999999863211 010 0 0 00001110000
Q ss_pred -----cee---ecCCCCCC-CCCCC-CCCHHHHHHHHHHHHHHcCC--cceecceEEEEEEeCCC-CeEEEEEeecCcCC
Q 013943 87 -----QFC---ELPLMGFP-SEFPT-YPSKQQFVDYLEAYAKRFEI--RPRFNETVSQAEYDATI-RFWRVKTTVGGQKC 153 (433)
Q Consensus 87 -----~~~---~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~l--~~~~~~~v~~v~~~~~~-~~~~v~~~~g~~~~ 153 (433)
... .+...... ..++. ..+...+.+.+.+.+.+.+. .+++++++++++.+++. ..+++++.+.....
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 000 00000000 01111 23566777888887777654 67889999999876431 34666665420001
Q ss_pred CceeEEEEeCEEEEccCCCCC
Q 013943 154 GVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 154 ~~~~~~~~~d~viiAtG~~~~ 174 (433)
+++.+++++|+||.|.|..|.
T Consensus 191 ~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 191 EGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred CCceEEEEeCEEEECCCCchH
Confidence 233468999999999997663
No 166
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.82 E-value=3.9e-08 Score=94.52 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
+...++...+.+.+.+.+.+++++++|++++...+. .+.+.+.+| ..+++|+.||.|.|.++.+
T Consensus 150 V~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g-------~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 150 VDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNG-------EETLEAKFVINAAGLYADP 213 (429)
T ss_pred EcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCC-------cEEEEeeEEEECCchhHHH
Confidence 455666777777888889999999999999998852 555666654 1229999999999976533
No 167
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.81 E-value=7.7e-08 Score=93.66 Aligned_cols=61 Identities=23% Similarity=0.169 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
.....+...+.+.+.+.+++++.+++|++++.++ ..+.|.+.+ .++.+|.||+|+|.++..
T Consensus 142 i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~v~~~~---------~~i~a~~vV~aaG~~~~~ 202 (380)
T TIGR01377 142 LYAEKALRALQELAEAHGATVRDGTKVVEIEPTE--LLVTVKTTK---------GSYQANKLVVTAGAWTSK 202 (380)
T ss_pred EcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEEEEeCC---------CEEEeCEEEEecCcchHH
Confidence 3556777788888888899999999999998765 456676654 368999999999976543
No 168
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.81 E-value=8.1e-08 Score=93.91 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
.....+...+.+.+.+.+++++++++|++++..+ +.|.|.+.+ ..+.+|.||+|+|.++
T Consensus 146 vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~~V~~~~---------g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 146 VDYRAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGVVVRTTQ---------GEYEARTLINCAGLMS 204 (393)
T ss_pred ECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeEEEEECC---------CEEEeCEEEECCCcch
Confidence 3567778888888888899999999999998765 456676654 3689999999999765
No 169
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.80 E-value=4.5e-08 Score=94.44 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=74.3
Q ss_pred CeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCC--cccccccCc-----------eeeecCCceeecCCCCCCC-
Q 013943 35 GPVIVGAGPSGLATAACLKER--GIPSILLERSNCIAS--LWQLKTYDR-----------LRLHLPKQFCELPLMGFPS- 98 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~--g~~v~iie~~~~~gg--~w~~~~~~~-----------~~~~~~~~~~~~~~~~~~~- 98 (433)
||+|||||+||+++|..|.+. |++|+++|+.+..++ .|.....+. +....+.....++.....-
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999987776 332211000 0000000000010000000
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCC
Q 013943 99 EFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGEN 172 (433)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~ 172 (433)
..-..+.+.++.+++.+.+ +..++++++|++++ . +. +++.+| .+++++.||.|.|..
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l---~~~i~~~~~V~~v~--~--~~--v~l~dg--------~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAF---PEGVILGRKAVGLD--A--DG--VDLAPG--------TRINARSVIDCRGFK 137 (370)
T ss_pred CCceEEEHHHHHHHHHHhh---cccEEecCEEEEEe--C--CE--EEECCC--------CEEEeeEEEECCCCC
Confidence 0012346788888776544 33377788898883 2 33 444565 789999999999954
No 170
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.80 E-value=1.2e-07 Score=95.64 Aligned_cols=65 Identities=22% Similarity=0.156 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 105 SKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
....+...+...+.+.|.+++.+++|+++..++ +.|.+.+.++ .++..++.++.||.|+|.|+..
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~----~g~~~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 153 DDARLVVLNALDAAERGATILTRTRCVSARREG--GLWRVETRDA----DGETRTVRARALVNAAGPWVTD 217 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEEEEEEEeC----CCCEEEEEecEEEECCCccHHH
Confidence 345555566667788899999999999998765 5677777664 2345679999999999987643
No 171
>PLN02985 squalene monooxygenase
Probab=98.78 E-value=1.5e-07 Score=94.49 Aligned_cols=138 Identities=21% Similarity=0.157 Sum_probs=79.0
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC----Cccccc---------------------ccCceeeecC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA----SLWQLK---------------------TYDRLRLHLP 85 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g----g~w~~~---------------------~~~~~~~~~~ 85 (433)
...+||+|||||++|+++|..|++.|++|+|+|+..... |.+-.. ...++.....
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~ 120 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKD 120 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEEC
Confidence 456899999999999999999999999999999975211 111100 0111111110
Q ss_pred Cce--eecCCCC--CCCCCC-CCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEE
Q 013943 86 KQF--CELPLMG--FPSEFP-TYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEME 159 (433)
Q Consensus 86 ~~~--~~~~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~ 159 (433)
... ..++... ++.... ....+.++...+.+.+.+. ++++..+ +++++..+++ ....|+.... +++..+
T Consensus 121 g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~-~v~gV~~~~~----dG~~~~ 194 (514)
T PLN02985 121 GKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKG-VIKGVTYKNS----AGEETT 194 (514)
T ss_pred CEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCC-EEEEEEEEcC----CCCEEE
Confidence 000 0111000 000001 1246678888888888766 5776655 5666654432 2222333221 223456
Q ss_pred EEeCEEEEccCCCCC
Q 013943 160 YRCRWLVVATGENAE 174 (433)
Q Consensus 160 ~~~d~viiAtG~~~~ 174 (433)
+.+|.||.|+|.+|.
T Consensus 195 ~~AdLVVgADG~~S~ 209 (514)
T PLN02985 195 ALAPLTVVCDGCYSN 209 (514)
T ss_pred EECCEEEECCCCchH
Confidence 789999999997664
No 172
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.77 E-value=2.3e-07 Score=93.44 Aligned_cols=138 Identities=21% Similarity=0.220 Sum_probs=83.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc--------ccccc---------------cCcee-------
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL--------WQLKT---------------YDRLR------- 81 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~--------w~~~~---------------~~~~~------- 81 (433)
..+||||||+|.+|+++|+.+++.|.+|+|+||....||. |.... +..+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999999877652 11100 00000
Q ss_pred ------e---ecCC--ceeecCCCCCC-----------CCC-C--CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEe
Q 013943 82 ------L---HLPK--QFCELPLMGFP-----------SEF-P--TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYD 136 (433)
Q Consensus 82 ------~---~~~~--~~~~~~~~~~~-----------~~~-~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~ 136 (433)
. ..+. .|+.-...++. ... + .......+.+.+.+.+++.+++++++++|+++..+
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 219 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK 219 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence 0 0000 00000000000 000 0 11133567778888888899999999999999865
Q ss_pred CCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 137 ATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 137 ~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
+. ...-+..... +++...+.++.||+|+|.+..
T Consensus 220 ~g-~V~Gv~~~~~----~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 220 DG-KVTGVKVKIN----GKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred CC-EEEEEEEEeC----CCeEEEEecCeEEEeCCCccc
Confidence 42 2222333221 222467999999999996543
No 173
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.76 E-value=1.5e-08 Score=71.87 Aligned_cols=50 Identities=28% Similarity=0.374 Sum_probs=42.5
Q ss_pred EECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCc
Q 013943 38 IVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQ 87 (433)
Q Consensus 38 IIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~ 87 (433)
|||||++|+++|..|++.|++|+|+|+.+.+||.+....+++...+...+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~ 50 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAH 50 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccE
Confidence 89999999999999999999999999999999999887666666555443
No 174
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.76 E-value=1.8e-07 Score=92.13 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 105 SKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
....+...+.+.+.+.|++++.+++|++++..+ +.|.+.+.++ . ..+...+++|.||+|+|.++.
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~--~-~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPS--A-EHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcC--C-CCccceEecCEEEECCCcChH
Confidence 445666777788888999999999999998765 4566655432 0 000136899999999997653
No 175
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.75 E-value=4.8e-08 Score=104.77 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=32.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNC 67 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~ 67 (433)
.+||+|||+|.||+.+|..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 47999999999999999999999999999999864
No 176
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.74 E-value=9.4e-07 Score=83.67 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 105 SKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
....+...+.+++...|++++++++|++++..++ ....+.+++| ..+.+|+||+|.|..+
T Consensus 171 ~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-~~~~v~~~~g--------~~i~~~~vvlA~Grsg 230 (486)
T COG2509 171 ILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-EVLGVKLTKG--------EEIEADYVVLAPGRSG 230 (486)
T ss_pred chHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-ceEEEEccCC--------cEEecCEEEEccCcch
Confidence 3466778888899999999999999999998875 3456777776 8999999999999754
No 177
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.74 E-value=4e-08 Score=93.34 Aligned_cols=127 Identities=16% Similarity=0.195 Sum_probs=75.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEE-ecCCCCCCcccccccCcee---------------eecCC----ceeecCCC
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILL-ERSNCIASLWQLKTYDRLR---------------LHLPK----QFCELPLM 94 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~ii-e~~~~~gg~w~~~~~~~~~---------------~~~~~----~~~~~~~~ 94 (433)
||+|||||+||+.||..+++.|.+|+++ .+.+.++..-..+...+.. ..... ++......
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 7999999999999999999999999999 4444444332222111110 00000 00000000
Q ss_pred CCCCCCCC--CCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 95 GFPSEFPT--YPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 95 ~~~~~~~~--~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
.-|..+.. ...+..|..++++.+... ++++ ...+|+++..+++ ..+-|.+.+| ..+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~-~v~GV~~~~g--------~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTI-IQGEVTDLIVENG-KVKGVVTKDG--------EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEE-EES-EEEEEECTT-EEEEEEETTS--------EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEE-EEcccceEEecCC-eEEEEEeCCC--------CEEecCEEEEeccc
Confidence 00111111 357899999999888774 5665 4678999988764 5566777776 79999999999994
No 178
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.73 E-value=2.8e-07 Score=92.23 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=82.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC--CCCc--cccc---ccCce-e----eecCCc------------
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNC--IASL--WQLK---TYDRL-R----LHLPKQ------------ 87 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~--~gg~--w~~~---~~~~~-~----~~~~~~------------ 87 (433)
..+||||||+|++|+++|..+++.|.+|+|+||.+. .||. +... ..... . ...+..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 458999999999999999999999999999999863 4442 1000 00000 0 000000
Q ss_pred ------------------eeecCCCCCCCCCC-----------CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCC
Q 013943 88 ------------------FCELPLMGFPSEFP-----------TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDAT 138 (433)
Q Consensus 88 ------------------~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~ 138 (433)
|+.-...++..... .......+...+.+.+++.+++++++++|+++..+++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g 162 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG 162 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence 00000001100000 0012456777888888889999999999999987542
Q ss_pred CCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 139 IRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 139 ~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
..+-+...+. +++...+.++.||+|||.+.
T Consensus 163 -~v~gv~~~~~----~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 163 -RFVGARAGSA----AGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred -eEEEEEEEcc----CCceEEEECCEEEECCCCCC
Confidence 3333433211 22246789999999999654
No 179
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.70 E-value=3.3e-07 Score=85.28 Aligned_cols=144 Identities=23% Similarity=0.283 Sum_probs=88.5
Q ss_pred ccCCCCeEEECCChHHHHHHHHHHHc------CCCEEEEecCCCCCCc------------------ccccc--------c
Q 013943 30 CICVPGPVIVGAGPSGLATAACLKER------GIPSILLERSNCIASL------------------WQLKT--------Y 77 (433)
Q Consensus 30 ~~~~~dVvIIGaG~aGl~~A~~L~~~------g~~v~iie~~~~~gg~------------------w~~~~--------~ 77 (433)
.+..+||+|||||||||++|++|.+. .++|+++|+...+||. |.... .
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~ 152 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTS 152 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccc
Confidence 34669999999999999999999874 4689999999988874 22210 0
Q ss_pred CceeeecCCceeecCCCCCCCCCCCC-CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEee------cC
Q 013943 78 DRLRLHLPKQFCELPLMGFPSEFPTY-PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTV------GG 150 (433)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~------g~ 150 (433)
+.+.....+....++...--++...| ++-..+..++.+.+++.|+++.=+..+..+-++++....-|.++| |.
T Consensus 153 d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~ 232 (621)
T KOG2415|consen 153 DKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGA 232 (621)
T ss_pred cceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCC
Confidence 11111111111111111100111223 477889999999999999998766666666666654333343332 11
Q ss_pred cCCC-ceeEEEEeCEEEEccCCCC
Q 013943 151 QKCG-VEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 151 ~~~~-~~~~~~~~d~viiAtG~~~ 173 (433)
..++ .+-..+.++.-|.|-|+.+
T Consensus 233 pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 233 PKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred ccccccccceecceeEEEeccccc
Confidence 1111 1124789999999999753
No 180
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.69 E-value=4e-07 Score=91.69 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 106 KQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 106 ~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
...+...+...+.+.|++++.+++|+++..++ +.|.+++.+. ..++...+.++.||.|+|.|+..
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~v~~~~~---~~g~~~~i~a~~VVnAaG~wa~~ 218 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARREN--GLWHVTLEDT---ATGKRYTVRARALVNAAGPWVKQ 218 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEEc---CCCCEEEEEcCEEEECCCccHHH
Confidence 34444555566788899999999999998765 4576766541 01223679999999999987643
No 181
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.69 E-value=2.5e-07 Score=91.28 Aligned_cols=136 Identities=19% Similarity=0.178 Sum_probs=81.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc--cc----c----------Cceee-----------ecCCc
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL--KT----Y----------DRLRL-----------HLPKQ 87 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~--~~----~----------~~~~~-----------~~~~~ 87 (433)
||||||+|.+|+++|+++++.|.+|+|+||....||.-.. .. . +.... .....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999876652111 00 0 00000 00000
Q ss_pred e--------------eecCCCCCCC----------------C------C-----CCCCCHHHHHHHHHHHHHHcCCccee
Q 013943 88 F--------------CELPLMGFPS----------------E------F-----PTYPSKQQFVDYLEAYAKRFEIRPRF 126 (433)
Q Consensus 88 ~--------------~~~~~~~~~~----------------~------~-----~~~~~~~~~~~~l~~~~~~~~l~~~~ 126 (433)
+ +.-...++.. . . ........+...+.+.+++.++++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~ 160 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRF 160 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeec
Confidence 0 0000000000 0 0 01125677888999999999999999
Q ss_pred cceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 127 NETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 127 ~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
+++++++..++. ...-+...+ ..+++...+.++.||+|||.+..
T Consensus 161 ~~~~~~Li~e~g-~V~Gv~~~~---~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 161 NTRVTDLITEDG-RVTGVVAEN---PADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp SEEEEEEEEETT-EEEEEEEEE---TTTCEEEEEEESEEEE----BGG
T ss_pred cceeeeEEEeCC-ceeEEEEEE---CCCCeEEEEeeeEEEeccCcccc
Confidence 999999998764 333333331 11455678999999999996654
No 182
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.69 E-value=1.1e-07 Score=94.57 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHH----cC--CcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 104 PSKQQFVDYLEAYAKR----FE--IRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~----~~--l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
+....+...+.+.+.+ .| ++++++++|++++..++ ..|.|.+.++ ++++|+||+|+|.++.
T Consensus 208 Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-~~~~V~T~~G---------~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 208 VDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND-SLYKIHTNRG---------EIRARFVVVSACGYSL 274 (497)
T ss_pred ECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-CeEEEEECCC---------EEEeCEEEECcChhHH
Confidence 3455666777777777 66 67899999999998743 5678887753 6999999999998753
No 183
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.68 E-value=2.9e-07 Score=96.00 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 103 YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
+.....+...+.+.+.+ +++++++++|++++..+ +.|+|.+.++ ..+.+|.||+|+|.++..
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~v~t~~g--------~~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQLDFAGG--------TLASAPVVVLANGHDAAR 465 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEEEEECCC--------cEEECCEEEECCCCCccc
Confidence 34556777777777777 89999999999998866 5687877664 567899999999986543
No 184
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.66 E-value=2.7e-07 Score=92.05 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=78.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc-ccccc-------Cceeee---------------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW-QLKTY-------DRLRLH--------------------- 83 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w-~~~~~-------~~~~~~--------------------- 83 (433)
|+||+|||+|.||+++|..+++.|.+|+|+||....+..+ ...-+ +.....
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5899999999999999999999999999999986332111 00000 000000
Q ss_pred --cCC--ceeecCCCCCCC-------CCCC-----CCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEe
Q 013943 84 --LPK--QFCELPLMGFPS-------EFPT-----YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTT 147 (433)
Q Consensus 84 --~~~--~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~ 147 (433)
.+. .++.-...++.. .++. -.+...+.+.+.+.+.+.++++... .++.+..+++ ...-+..
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g-~v~Gv~~- 157 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNG-KAYGVFL- 157 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCC-EEEEEEE-
Confidence 000 000000111110 0110 1245678888888888889998765 7877765432 2222333
Q ss_pred ecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 148 VGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 148 ~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
++ ..+.++.||+|||.++..
T Consensus 158 ~g--------~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 158 DG--------ELLKFDATVIATGGFSGL 177 (466)
T ss_pred CC--------EEEEeCeEEECCCcCcCC
Confidence 33 578999999999976543
No 185
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.65 E-value=2.6e-07 Score=89.75 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=78.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....++...+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~-~~~~~~~~~l 189 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------S-LMPPEVSSRL 189 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------h-hCCHHHHHHH
Confidence 6799999999999999999999999999999774310 0 0123456677
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
.+.+++.+++++++++|++++.++ ..+.+.+.++ .++.+|.||+|+| .+|+
T Consensus 190 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~vI~a~G--~~p~ 240 (377)
T PRK04965 190 QHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSG--------RSIEVDAVIAAAG--LRPN 240 (377)
T ss_pred HHHHHhCCCEEEECCeEEEEEccC--CEEEEEEcCC--------cEEECCEEEECcC--CCcc
Confidence 777888899999999999998765 4566777765 6899999999999 5554
No 186
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.65 E-value=3.2e-07 Score=88.81 Aligned_cols=34 Identities=41% Similarity=0.540 Sum_probs=32.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNC 67 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~ 67 (433)
+||+|||||++|+++|+.|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6899999999999999999999999999999763
No 187
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.64 E-value=3e-07 Score=91.68 Aligned_cols=63 Identities=16% Similarity=0.040 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+...+...+.+.+.+.+++++.++.|++++. + ..+.|.+.+ ..+.+|.||+|+|.++....+
T Consensus 180 i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~~~v~t~~---------g~v~A~~VV~Atga~s~~l~~ 242 (460)
T TIGR03329 180 VQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G--QPAVVRTPD---------GQVTADKVVLALNAWMASHFP 242 (460)
T ss_pred ECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C--CceEEEeCC---------cEEECCEEEEcccccccccCh
Confidence 45566777788888889999999999999975 2 346677665 368999999999987654433
No 188
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.64 E-value=5e-07 Score=90.55 Aligned_cols=131 Identities=13% Similarity=0.108 Sum_probs=79.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC-CcccccccC---------ceeeec-------CCceeecCCC--
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA-SLWQLKTYD---------RLRLHL-------PKQFCELPLM-- 94 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g-g~w~~~~~~---------~~~~~~-------~~~~~~~~~~-- 94 (433)
|||+|||||++|+.+|..+++.|.+|+++|+..... ......... .+.... ......+...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 699999999999999999999999999999874322 211111111 100000 0000000000
Q ss_pred -CCCCCCC--CCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccC
Q 013943 95 -GFPSEFP--TYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATG 170 (433)
Q Consensus 95 -~~~~~~~--~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG 170 (433)
.-+..+. ....+..+...+.+.+++. ++.++ ...|+.+..+.+...+.|.+.+| ..+.++.||+|||
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G--------~~I~Ad~VILATG 151 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDG--------LKFRAKAVIITTG 151 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCC--------CEEECCEEEEccC
Confidence 0011111 1346778888888888877 56654 44777776542224555777665 5899999999999
Q ss_pred CCC
Q 013943 171 ENA 173 (433)
Q Consensus 171 ~~~ 173 (433)
.+.
T Consensus 152 tfL 154 (617)
T TIGR00136 152 TFL 154 (617)
T ss_pred ccc
Confidence 653
No 189
>PRK07121 hypothetical protein; Validated
Probab=98.63 E-value=9.8e-07 Score=88.85 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEe-CEEEEccCCCC
Q 013943 106 KQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRC-RWLVVATGENA 173 (433)
Q Consensus 106 ~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-d~viiAtG~~~ 173 (433)
...+...+.+.+++.+++++++++++++..+++....-|...+ .++...+.+ +.||+|||.++
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCcEEEEEeCCEEEECCCCcC
Confidence 5567888888888899999999999999876432333343332 222457889 99999999654
No 190
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.62 E-value=6.6e-07 Score=91.34 Aligned_cols=131 Identities=17% Similarity=0.185 Sum_probs=79.5
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC---CCCcccc------c---ccCce-----------------e
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNC---IASLWQL------K---TYDRL-----------------R 81 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~---~gg~w~~------~---~~~~~-----------------~ 81 (433)
....+|+|||||++|+++|..|+++|++|+|||+... ..|.+.. + ....+ .
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 4558999999999999999999999999999999752 1111110 0 00000 0
Q ss_pred e----ecCC-c-eeecCCCCCCCC--CC--CCCCHHHHHHHHHHHHHHcCCc-ceecceEEEEEEeCCCCeEEEEEeecC
Q 013943 82 L----HLPK-Q-FCELPLMGFPSE--FP--TYPSKQQFVDYLEAYAKRFEIR-PRFNETVSQAEYDATIRFWRVKTTVGG 150 (433)
Q Consensus 82 ~----~~~~-~-~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~l~-~~~~~~v~~v~~~~~~~~~~v~~~~g~ 150 (433)
. .... . ...+........ .+ ..+.+.++.+.|.+ ..+.. ++++++|++++..+ +.+++++.++
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~---alg~~~i~~g~~V~~I~~~~--d~VtV~~~dG- 232 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILAR---AVGEDVIRNESNVVDFEDSG--DKVTVVLENG- 232 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHh---hCCCCEEEcCCEEEEEEEeC--CEEEEEECCC-
Confidence 0 0000 0 001110000000 01 12356666666644 33434 57888999998766 5677887775
Q ss_pred cCCCceeEEEEeCEEEEccCCCCC
Q 013943 151 QKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 151 ~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
.++.+|.||.|.|.++.
T Consensus 233 -------~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 233 -------QRYEGDLLVGADGIWSK 249 (668)
T ss_pred -------CEEEcCEEEECCCCCcH
Confidence 67899999999998663
No 191
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.62 E-value=7.5e-07 Score=89.24 Aligned_cols=104 Identities=22% Similarity=0.265 Sum_probs=77.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~~~~~~~~l 227 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-------------------------------PT--EDAELSKEV 227 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999886331 00 124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++.+++|++++...+.+...+...++ +...+.+|.||+|+| .+|+.+
T Consensus 228 ~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g------~~~~i~~D~vi~a~G--~~p~~~ 284 (472)
T PRK05976 228 ARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNG------EEKTLEADKVLVSVG--RRPNTE 284 (472)
T ss_pred HHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCC------ceEEEEeCEEEEeeC--CccCCC
Confidence 778888899999999999997621112222233332 235799999999999 666654
No 192
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.61 E-value=6e-07 Score=87.91 Aligned_cols=104 Identities=20% Similarity=0.191 Sum_probs=84.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+++|||||+.|+.+|..+.+.|.+|+|+|+.+.+-. .-.+++.+.+
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp---------------------------------~~D~ei~~~~ 220 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP---------------------------------GEDPEISKEL 220 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC---------------------------------cCCHHHHHHH
Confidence 5699999999999999999999999999999984410 1247788888
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCc
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEI 180 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~ 180 (433)
.+.+++.++.++++++++.++..++ .+.++++++ . ...+++|.|++|+| .+|+...+
T Consensus 221 ~~~l~~~gv~i~~~~~v~~~~~~~~--~v~v~~~~g----~--~~~~~ad~vLvAiG--R~Pn~~~L 277 (454)
T COG1249 221 TKQLEKGGVKILLNTKVTAVEKKDD--GVLVTLEDG----E--GGTIEADAVLVAIG--RKPNTDGL 277 (454)
T ss_pred HHHHHhCCeEEEccceEEEEEecCC--eEEEEEecC----C--CCEEEeeEEEEccC--CccCCCCC
Confidence 8888888899999999999988764 266777664 1 12789999999999 78877643
No 193
>PRK12839 hypothetical protein; Provisional
Probab=98.60 E-value=1.8e-06 Score=88.10 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=38.0
Q ss_pred CccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 013943 29 RCICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71 (433)
Q Consensus 29 ~~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~ 71 (433)
+....+||+|||+|.+|+++|..+.+.|.+|+++|+...+||.
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 3445799999999999999999999999999999999877753
No 194
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.59 E-value=6.6e-07 Score=88.83 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHH-cCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 105 SKQQFVDYLEAYAKR-FEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~-~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
....+...+.+.+.+ .+++++++++|++++..++ +.|+++..+. . .++..++++|+||+|.|.++.
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w~v~v~~t-~--~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGWEVTVKDR-N--TGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCEEEEEEec-C--CCceEEEEcCEEEECCCcchH
Confidence 444555555555544 4789999999999987633 5687764210 0 111236899999999998763
No 195
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.59 E-value=7.7e-07 Score=87.51 Aligned_cols=61 Identities=16% Similarity=-0.081 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
.....+...+.+.+.+.|++++.+++|++++..++...+.|.+.+ ..+.++.||+|+|.++
T Consensus 180 v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~---------g~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTR---------GFIGAKKVGVAVAGHS 240 (407)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCC---------ceEECCEEEECCChhh
Confidence 344555666777788889999999999999764332334466655 3689999999999754
No 196
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.59 E-value=4e-07 Score=89.07 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=77.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.+. ....++..++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~l 192 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRYL 192 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHHH
Confidence 67999999999999999999999999999998743210 1124556777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
.+.+++.+++++++++|++++. + ..+.+.+.++ ..+.+|.||+|+| .+|+
T Consensus 193 ~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~g--------~~i~aD~Vv~a~G--~~pn 242 (396)
T PRK09754 193 LQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQSG--------ETLQADVVIYGIG--ISAN 242 (396)
T ss_pred HHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECCC--------CEEECCEEEECCC--CChh
Confidence 7888888999999999999876 2 3455666665 5799999999999 5554
No 197
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.58 E-value=1.1e-06 Score=89.16 Aligned_cols=143 Identities=17% Similarity=0.085 Sum_probs=84.1
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC--------ccccc-ccCcee------------e--------
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS--------LWQLK-TYDRLR------------L-------- 82 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg--------~w~~~-~~~~~~------------~-------- 82 (433)
..+||+|||+|.||+++|..+++.|.+|+|+||....+| .+... ..+... .
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 458999999999999999999999999999999876543 11100 000000 0
Q ss_pred ---ecCC--ceeecCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeC
Q 013943 83 ---HLPK--QFCELPLMGFPSE--------------FP------TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDA 137 (433)
Q Consensus 83 ---~~~~--~~~~~~~~~~~~~--------------~~------~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~ 137 (433)
..+. .++.-...++... .. +-.+...+...|.+.+++.+++++.++.|+++..++
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~ 174 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDG 174 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcC
Confidence 0000 0000000111100 00 012467788888888888899999999999997754
Q ss_pred CCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 138 TIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 138 ~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
+....-+...+-..........+.++.||+|||.++.
T Consensus 175 ~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 175 TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 3222223322100000111357899999999997654
No 198
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.58 E-value=6.8e-08 Score=71.32 Aligned_cols=36 Identities=33% Similarity=0.555 Sum_probs=32.9
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceec
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLP 242 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp 242 (433)
+++|||+|++|+|+|..|++.+.+||++.+++ ++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~ 36 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLP 36 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSST
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhh
Confidence 68999999999999999999999999999999 4444
No 199
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.57 E-value=1.1e-06 Score=87.96 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=80.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...+
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~l 219 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-------------------------------PG--EDKEISKLA 219 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999987331 00 124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|++++.++ +.+.+.+.++ ++...+.+|.||+|+| .+|+..
T Consensus 220 ~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~g-----g~~~~i~~D~vi~a~G--~~p~~~ 275 (462)
T PRK06416 220 ERALKKRGIKIKTGAKAKKVEQTD--DGVTVTLEDG-----GKEETLEADYVLVAVG--RRPNTE 275 (462)
T ss_pred HHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEEeC-----CeeEEEEeCEEEEeeC--CccCCC
Confidence 888888899999999999998765 3455555432 2235799999999999 666654
No 200
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.57 E-value=8.7e-07 Score=87.94 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=77.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . ...++...+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~~ 204 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-------------------------------R--EEPSVAALA 204 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-------------------------------C--CCHHHHHHH
Confidence 5799999999999999999999999999999863310 0 124556677
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|++++.++ ..+.+.. ++ ..+.+|.||+|+| .+|+..
T Consensus 205 ~~~l~~~GI~i~~~~~V~~i~~~~--~~v~v~~-~g--------~~i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 205 KQYMEEDGITFLLNAHTTEVKNDG--DQVLVVT-ED--------ETYRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHcCCEEEcCCEEEEEEecC--CEEEEEE-CC--------eEEEcCEEEEeeC--CCCCcc
Confidence 788888899999999999998754 3444443 33 5799999999999 666654
No 201
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.57 E-value=8.3e-07 Score=90.19 Aligned_cols=66 Identities=14% Similarity=-0.048 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
.....+...+...+.+.|++++++++|+++..+++ ..+.+.+.+. ..++...+.++.||.|+|.|+
T Consensus 146 vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-~v~gv~v~d~---~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 146 VDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGD-TVCGVRVRDH---LTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred ECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCC-eEEEEEEEEc---CCCcEEEEECCEEEECCChhH
Confidence 34455566666677888999999999999987653 2223444321 011235799999999999875
No 202
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.56 E-value=3.2e-06 Score=84.19 Aligned_cols=43 Identities=23% Similarity=0.246 Sum_probs=37.8
Q ss_pred ccCCCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCCcc
Q 013943 30 CICVPGPVIVGAGPSGLATAACLKER----GIPSILLERSNCIASLW 72 (433)
Q Consensus 30 ~~~~~dVvIIGaG~aGl~~A~~L~~~----g~~v~iie~~~~~gg~w 72 (433)
..+..+|+|||||+|||++|..|.+. |.+|+|+|+.+.+||..
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 34458999999999999999999996 67999999999998854
No 203
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.55 E-value=1.3e-06 Score=87.51 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=80.4
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~~ 230 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL-------------------------------AA--ADEQVAKEA 230 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999976331 00 125566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++.+++|++++..+ ..+.+...++ +++...+.+|.|++|+| .+|+.+
T Consensus 231 ~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~~----~g~~~~i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 231 AKAFTKQGLDIHLGVKIGEIKTGG--KGVSVAYTDA----DGEAQTLEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHcCcEEEeCcEEEEEEEcC--CEEEEEEEeC----CCceeEEEcCEEEEccC--CccCCC
Confidence 777888899999999999998765 3445555442 23346799999999999 667655
No 204
>PTZ00367 squalene epoxidase; Provisional
Probab=98.55 E-value=8.6e-07 Score=89.73 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=33.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999999999999999975
No 205
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.54 E-value=1.8e-06 Score=88.86 Aligned_cols=140 Identities=17% Similarity=0.087 Sum_probs=84.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc--ccccccCce----eeecCCcee-----------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL--WQLKTYDRL----RLHLPKQFC----------------- 89 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~--w~~~~~~~~----~~~~~~~~~----------------- 89 (433)
.+||||||+|.||+++|+++++.|.+|+|+||....+|. +....+... .-+.+..+.
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~ 108 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ 108 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 479999999999999999999999999999998755542 111000000 000000000
Q ss_pred -------------ecCCCCCC---C------CCCC------------------CCCHHHHHHHHHHHHHHcCCcceecce
Q 013943 90 -------------ELPLMGFP---S------EFPT------------------YPSKQQFVDYLEAYAKRFEIRPRFNET 129 (433)
Q Consensus 90 -------------~~~~~~~~---~------~~~~------------------~~~~~~~~~~l~~~~~~~~l~~~~~~~ 129 (433)
.--..+|. + .+.+ -.+...+...+.+.+.+.++++..++.
T Consensus 109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 188 (617)
T PTZ00139 109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYF 188 (617)
T ss_pred HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEeceE
Confidence 00001110 0 0000 013567888888888888999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 130 VSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 130 v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
++++-.+++....-+...+. ..++...+.++.||+|||.+...
T Consensus 189 ~~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 189 ALDLIMDEDGECRGVIAMSM---EDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred EEEEEECCCCEEEEEEEEEC---CCCeEEEEECCcEEEeCCCCccc
Confidence 99987633222222322110 03345688999999999976554
No 206
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.53 E-value=1.2e-06 Score=87.56 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ....++...+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~~~~~~~~~ 217 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP---------------------------------GEDAEVSKVV 217 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC---------------------------------CCCHHHHHHH
Confidence 6899999999999999999999999999999873310 0124566677
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|++++.++ +.+.+...++ +...+.+|.||+|+| ..|+..
T Consensus 218 ~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~g------~~~~i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 218 AKALKKKGVKILTNTKVTAVEKND--DQVVYENKGG------ETETLTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeCC------cEEEEEeCEEEEecC--CcccCC
Confidence 778888899999999999998765 4455554432 125799999999999 666654
No 207
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.53 E-value=2.1e-06 Score=88.39 Aligned_cols=141 Identities=20% Similarity=0.114 Sum_probs=83.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC--------cccccc---cCceee-------------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS--------LWQLKT---YDRLRL------------------- 82 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg--------~w~~~~---~~~~~~------------------- 82 (433)
.+||||||+|.||+++|.++++.|.+|+|+||....+| .+.... -+....
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~ 129 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 129 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 37999999999999999999999999999999875443 111100 000000
Q ss_pred ----ecCCc--eeecCCCCCCCC---------CCC------------------CCCHHHHHHHHHHHHHHcCCcceecce
Q 013943 83 ----HLPKQ--FCELPLMGFPSE---------FPT------------------YPSKQQFVDYLEAYAKRFEIRPRFNET 129 (433)
Q Consensus 83 ----~~~~~--~~~~~~~~~~~~---------~~~------------------~~~~~~~~~~l~~~~~~~~l~~~~~~~ 129 (433)
..+.. ++.--..+|... +.+ -.+...+...+.+.+.+.++++..++.
T Consensus 130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~ 209 (635)
T PLN00128 130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYF 209 (635)
T ss_pred HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence 00000 000001111100 000 014566778888878888999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 130 VSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 130 v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
++++-.+++....-+...+. ..++...+.++.||+|||.++...
T Consensus 210 ~~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVILATGG~g~~~ 253 (635)
T PLN00128 210 ALDLIMDSDGACQGVIALNM---EDGTLHRFRAHSTILATGGYGRAY 253 (635)
T ss_pred EEEEEEcCCCEEEEEEEEEc---CCCeEEEEEcCeEEECCCCCcccc
Confidence 99977653222222332210 023456889999999999776543
No 208
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=2.2e-06 Score=88.55 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=33.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCI 68 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~ 68 (433)
..+||+|||+|.||++||..+++.|.+|+|+|+...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 4589999999999999999999999999999986544
No 209
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.52 E-value=1.6e-06 Score=86.46 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=77.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll-------------------------------~~--~d~e~~~~l 217 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL-------------------------------PG--EDEDIAHIL 217 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------cc--ccHHHHHHH
Confidence 589999999999999999999999999999876331 00 125567778
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|++++..+ ..+.+... + +...+.+|.||+|+| .+|+..
T Consensus 218 ~~~L~~~GI~i~~~~~V~~i~~~~--~~v~~~~~-g------~~~~i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 218 REKLENDGVKIFTGAALKGLNSYK--KQALFEYE-G------SIQEVNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHCCCEEEECCEEEEEEEcC--CEEEEEEC-C------ceEEEEeCEEEEecC--CccCCC
Confidence 888888899999999999998654 33333322 1 125799999999999 666654
No 210
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.52 E-value=1.7e-06 Score=88.86 Aligned_cols=138 Identities=15% Similarity=0.101 Sum_probs=79.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCC-cccccc--cCc-ee-eecCCcee----------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKER--GIPSILLERSNCIAS-LWQLKT--YDR-LR-LHLPKQFC---------------- 89 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~--g~~v~iie~~~~~gg-~w~~~~--~~~-~~-~~~~~~~~---------------- 89 (433)
.+||||||+|.||++||+.+++. |.+|+|+||....++ .+.... ... +. .+.+..+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv 90 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV 90 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence 37999999999999999999998 999999999864322 111110 000 00 00000000
Q ss_pred --------------ecCCCCCCCC-----C-----CCCCCHHHHHHHHHHHHHHcC-CcceecceEEEEEEeCCCCeEEE
Q 013943 90 --------------ELPLMGFPSE-----F-----PTYPSKQQFVDYLEAYAKRFE-IRPRFNETVSQAEYDATIRFWRV 144 (433)
Q Consensus 90 --------------~~~~~~~~~~-----~-----~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~v~~v~~~~~~~~~~v 144 (433)
.-...++... . ........+...+.+.+.+.+ ++++.++.|+++..+++ ..+-+
T Consensus 91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g-~v~Gv 169 (608)
T PRK06854 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDN-RIAGA 169 (608)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCC-EEEEE
Confidence 0000111000 0 001245567777777777765 99999999999876542 22222
Q ss_pred EEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 145 KTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 145 ~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
...+. ..++...+.++.||+|||.++.
T Consensus 170 ~~~~~---~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 170 VGFSV---RENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEEc---cCCcEEEEECCEEEECCCchhh
Confidence 21110 0222357899999999997654
No 211
>PRK08275 putative oxidoreductase; Provisional
Probab=98.51 E-value=1.2e-06 Score=89.40 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=81.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCC-CCccccc--ccCc-ee--eecCCcee---------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKER--GIPSILLERSNCI-ASLWQLK--TYDR-LR--LHLPKQFC--------------- 89 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~--g~~v~iie~~~~~-gg~w~~~--~~~~-~~--~~~~~~~~--------------- 89 (433)
.+||||||+|.||++||..+++. |.+|+|+||.... +|..... .+.. +. .+.+..+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence 38999999999999999999987 6899999998753 2221100 0000 00 00000000
Q ss_pred ---------------ecCCCCCCCC------------CC----CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCC
Q 013943 90 ---------------ELPLMGFPSE------------FP----TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDAT 138 (433)
Q Consensus 90 ---------------~~~~~~~~~~------------~~----~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~ 138 (433)
.-...++... .. .......+.+.+.+.+++.++++.+++.++++..+++
T Consensus 89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~ 168 (554)
T PRK08275 89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDAD 168 (554)
T ss_pred HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC
Confidence 0000111000 00 0124567888888888888999999999999977533
Q ss_pred CCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 139 IRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 139 ~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
....-+...+. ..++...+.++.||+|||.++.
T Consensus 169 g~v~Gv~~~~~---~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 169 GRVAGALGFDC---RTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred CeEEEEEEEec---CCCcEEEEECCEEEECCCCccc
Confidence 22222222110 0223457899999999996543
No 212
>PRK06116 glutathione reductase; Validated
Probab=98.51 E-value=1.4e-06 Score=86.85 Aligned_cols=101 Identities=20% Similarity=0.158 Sum_probs=80.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++...+
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~~~~~~~~~l 214 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR---------------------------------GFDPDIRETL 214 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc---------------------------------ccCHHHHHHH
Confidence 6899999999999999999999999999998763210 0124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|.+++.+++ +.+.+.+.++ .++.+|.||+|+| .+|+..
T Consensus 215 ~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~v~~~~g--------~~i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 215 VEEMEKKGIRLHTNAVPKAVEKNAD-GSLTLTLEDG--------ETLTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHCCcEEECCCEEEEEEEcCC-ceEEEEEcCC--------cEEEeCEEEEeeC--CCcCCC
Confidence 7888889999999999999987653 3356766665 5799999999999 666654
No 213
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.51 E-value=1.3e-06 Score=87.25 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=79.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .-..++...+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~l 222 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS---------------------------------FLDDEISDAL 222 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC---------------------------------cCCHHHHHHH
Confidence 6899999999999999999999999999999863310 0124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++.+++|++++..+ +.+.+++.++ ..+.+|.||+|+| .+|+..
T Consensus 223 ~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~vi~a~G--~~p~~~ 275 (461)
T PRK05249 223 SYHLRDSGVTIRHNEEVEKVEGGD--DGVIVHLKSG--------KKIKADCLLYANG--RTGNTD 275 (461)
T ss_pred HHHHHHcCCEEEECCEEEEEEEeC--CeEEEEECCC--------CEEEeCEEEEeec--CCcccc
Confidence 788888899999999999998765 3455666554 5799999999999 666543
No 214
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=3.5e-06 Score=86.41 Aligned_cols=140 Identities=16% Similarity=0.021 Sum_probs=82.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc--ccccc----CceeeecCCcee-----------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW--QLKTY----DRLRLHLPKQFC----------------- 89 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w--~~~~~----~~~~~~~~~~~~----------------- 89 (433)
.+||||||+|.||+++|..+++.|.+|+|+||....+|.. ..... ....-+.+...+
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~ 91 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIE 91 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHH
Confidence 4799999999999999999999999999999975433211 10000 000000000000
Q ss_pred -------------ecCCCCCCC---------CCC-----------------CCCCHHHHHHHHHHHHHHcCCcceecceE
Q 013943 90 -------------ELPLMGFPS---------EFP-----------------TYPSKQQFVDYLEAYAKRFEIRPRFNETV 130 (433)
Q Consensus 90 -------------~~~~~~~~~---------~~~-----------------~~~~~~~~~~~l~~~~~~~~l~~~~~~~v 130 (433)
.-...+|.. .+. .-.+...+...|.+.+.+.+++++.++.+
T Consensus 92 ~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~~~~ 171 (591)
T PRK07057 92 FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEWMA 171 (591)
T ss_pred HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeCcEE
Confidence 000001100 000 00134667888888888889999999999
Q ss_pred EEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 131 SQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 131 ~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
+.+..+++....-+...+. ..++...+.++.||+|||.++..
T Consensus 172 ~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 172 LDLIRDADGDVLGVTALEM---ETGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred EEEEEcCCCeEEEEEEEEc---CCCeEEEEECCeEEECCCCcccc
Confidence 9887653322322332210 02334678999999999976543
No 215
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=2.4e-06 Score=87.01 Aligned_cols=137 Identities=18% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC-CCCc--cccccc-------Ccee------------ee-------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNC-IASL--WQLKTY-------DRLR------------LH------- 83 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~-~gg~--w~~~~~-------~~~~------------~~------- 83 (433)
.+||||||+|.||++||..+ +.|.+|+|+||... .||. +....+ +... ..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~ 85 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI 85 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence 47999999999999999999 89999999999864 3432 111000 0000 00
Q ss_pred ----cCC--ceeecCCCCCCCC--------------CC-----CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCC
Q 013943 84 ----LPK--QFCELPLMGFPSE--------------FP-----TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDAT 138 (433)
Q Consensus 84 ----~~~--~~~~~~~~~~~~~--------------~~-----~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~ 138 (433)
.+. .++.-...++... ++ .-.+...+...+.+.+.+.++++++++.++++..+++
T Consensus 86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~ 165 (543)
T PRK06263 86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDEN 165 (543)
T ss_pred HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC
Confidence 000 0000001111100 00 0013567788888888888999999999999877643
Q ss_pred CCeEEEEEee-cCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 139 IRFWRVKTTV-GGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 139 ~~~~~v~~~~-g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
....-+...+ . .++...+.++.||+|||.+..
T Consensus 166 ~~v~Gv~~~~~~----~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 166 REVIGAIFLDLR----NGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred cEEEEEEEEECC----CCcEEEEEcCcEEECCCCCCC
Confidence 2122222221 1 233467899999999996553
No 216
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=1.2e-06 Score=89.58 Aligned_cols=139 Identities=16% Similarity=0.060 Sum_probs=82.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC--------cccc-cc--cCceee-------------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS--------LWQL-KT--YDRLRL------------------- 82 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg--------~w~~-~~--~~~~~~------------------- 82 (433)
.+||||||+|.||+++|.++++.|.+|+|+||....+| .+.. .. -+....
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~ 86 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 47999999999999999999999999999999865443 1111 00 000000
Q ss_pred ----ecCC--ceeecCCCCCCCC---------CCCC-----------------CCHHHHHHHHHHHHHHcCCcceecceE
Q 013943 83 ----HLPK--QFCELPLMGFPSE---------FPTY-----------------PSKQQFVDYLEAYAKRFEIRPRFNETV 130 (433)
Q Consensus 83 ----~~~~--~~~~~~~~~~~~~---------~~~~-----------------~~~~~~~~~l~~~~~~~~l~~~~~~~v 130 (433)
..+. .++.--..+|... +.+. .+...+...+.+.+.+.+++++.++.+
T Consensus 87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~ 166 (588)
T PRK08958 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEE
Confidence 0000 0000001111100 0000 145677788888777888999999999
Q ss_pred EEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 131 SQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 131 ~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
+++-.+++....-+...+. .+++...+.++.||+|||.++.
T Consensus 167 ~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 167 LDLVKNQDGAVVGCTAICI---ETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred EEEEECCCCEEEEEEEEEc---CCCcEEEEEcCeEEECCCCccc
Confidence 9987653322222322110 0233567899999999997654
No 217
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.50 E-value=2e-06 Score=84.93 Aligned_cols=133 Identities=13% Similarity=0.073 Sum_probs=77.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc--------ccccccCcee-------------ee--------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL--------WQLKTYDRLR-------------LH-------- 83 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~--------w~~~~~~~~~-------------~~-------- 83 (433)
.+||||||+|.||++||..+. .|.+|+|+||.+..+|. +.....+... .+
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~~ 82 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKILA 82 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 489999999999999999984 79999999998765542 1100000000 00
Q ss_pred --cCC--ceeecCCCCCC-----------CC-------CCCCCCHHHHHHHHHHHHHH-cCCcceecceEEEEEEeCCCC
Q 013943 84 --LPK--QFCELPLMGFP-----------SE-------FPTYPSKQQFVDYLEAYAKR-FEIRPRFNETVSQAEYDATIR 140 (433)
Q Consensus 84 --~~~--~~~~~~~~~~~-----------~~-------~~~~~~~~~~~~~l~~~~~~-~~l~~~~~~~v~~v~~~~~~~ 140 (433)
++. .|+.-...++. .. .+.-.+...+.+.+.+.+.+ .++++++++.++++..+++ .
T Consensus 83 ~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~-~ 161 (433)
T PRK06175 83 NESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN-T 161 (433)
T ss_pred HHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC-E
Confidence 000 00000000110 00 00011445677777766654 5899999999999876542 2
Q ss_pred eEEEEE-eecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 141 FWRVKT-TVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 141 ~~~v~~-~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
.+-+.. .++ +...+.++.||+|||.++
T Consensus 162 v~Gv~~~~~g------~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 162 CIGAICLKDN------KQINIYSKVTILATGGIG 189 (433)
T ss_pred EEEEEEEECC------cEEEEEcCeEEEccCccc
Confidence 222222 222 134789999999999644
No 218
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.50 E-value=1.2e-06 Score=83.70 Aligned_cols=102 Identities=27% Similarity=0.373 Sum_probs=79.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc-------------CCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKER-------------GIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPS 98 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~-------------g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (433)
..-.|+|||||+.|+.+|.+|++. ..+|+++|+.+.+-
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL----------------------------- 204 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL----------------------------- 204 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-----------------------------
Confidence 345799999999999999999864 13789999987441
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 99 EFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 99 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
+ .-.+++.++.++.+++.|+++++++.|++++.+. |++.++ .+.+.++.+|.|+|....|..-
T Consensus 205 --p--~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g-------~~~I~~~tvvWaaGv~a~~~~~ 267 (405)
T COG1252 205 --P--MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDG-------EEEIPADTVVWAAGVRASPLLK 267 (405)
T ss_pred --c--CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccC-------CeeEecCEEEEcCCCcCChhhh
Confidence 1 1236678899999999999999999999998765 777765 1269999999999965444443
Q ss_pred C
Q 013943 179 E 179 (433)
Q Consensus 179 ~ 179 (433)
.
T Consensus 268 ~ 268 (405)
T COG1252 268 D 268 (405)
T ss_pred h
Confidence 4
No 219
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=1.5e-06 Score=89.29 Aligned_cols=140 Identities=17% Similarity=0.057 Sum_probs=83.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC--------cccccc---cCceee------ecCCc--------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS--------LWQLKT---YDRLRL------HLPKQ-------- 87 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg--------~w~~~~---~~~~~~------~~~~~-------- 87 (433)
.+||||||+|.||++||+++++.|.+|+|+||....+| .+.... .+.... .....
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 91 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIE 91 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 48999999999999999999999999999999864333 111100 000000 00000
Q ss_pred -----------eeecCCCCCC---C------CCCC------------------CCCHHHHHHHHHHHHHHcCCcceecce
Q 013943 88 -----------FCELPLMGFP---S------EFPT------------------YPSKQQFVDYLEAYAKRFEIRPRFNET 129 (433)
Q Consensus 88 -----------~~~~~~~~~~---~------~~~~------------------~~~~~~~~~~l~~~~~~~~l~~~~~~~ 129 (433)
++.-...+|. + .+.+ -.....+...|.+.+.+.++++.+++.
T Consensus 92 ~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~~~ 171 (598)
T PRK09078 92 YMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEYF 171 (598)
T ss_pred HHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEeEE
Confidence 0000001110 0 0000 013567888888888888999999999
Q ss_pred EEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 130 VSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 130 v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
++++..+++....-+...+. .+++...+.++.||+|||.+...
T Consensus 172 v~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 172 ALDLIMDDGGVCRGVVAWNL---DDGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred EEEEEEcCCCEEEEEEEEEC---CCCcEEEEEcCEEEECCCCCccc
Confidence 99987654222222332110 02335688999999999976654
No 220
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.49 E-value=2.4e-06 Score=87.51 Aligned_cols=135 Identities=15% Similarity=0.075 Sum_probs=80.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCc--ccccc----cCcee-eecCC-----------cee---
Q 013943 33 VPGPVIVGAGPSGLATAACLKERG--IPSILLERSNCIASL--WQLKT----YDRLR-LHLPK-----------QFC--- 89 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~gg~--w~~~~----~~~~~-~~~~~-----------~~~--- 89 (433)
.+||+|||+|.||++||.++++.| .+|+|+||....+|. +.... ..... .+.+. ...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 479999999999999999999874 799999998754431 11100 00000 00000 000
Q ss_pred ----------------ecCCCCCCCC-------------------CCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEE
Q 013943 90 ----------------ELPLMGFPSE-------------------FPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAE 134 (433)
Q Consensus 90 ----------------~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~ 134 (433)
.--..+|+.. ++.-.+...+...+.+.+.+.+++++.++.|+++.
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~ 162 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLI 162 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEE
Confidence 0000111100 00112456788888888888899999999999987
Q ss_pred EeCCCCeEEE---EEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 135 YDATIRFWRV---KTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 135 ~~~~~~~~~v---~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
.++. ...-+ ...+ ++...+.++.||+|||.++.
T Consensus 163 ~~~g-~v~Gv~~~~~~~------g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 163 LEDN-QAKGVVMYHIAD------GRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred EECC-EEEEEEEEEcCC------CeEEEEECCEEEECCCCCcC
Confidence 6532 21112 2222 22357899999999997654
No 221
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.48 E-value=1.7e-06 Score=86.33 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
++...+...+.+.+.+.|++++++++|++++..++ +.|.+++.+. ..++..++++|+||+|+|.++.
T Consensus 175 Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~v~~~~~---~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 175 VDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWTVTVKNT---RTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred ECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEEEEEeec---cCCceEEEECCEEEECCCcchH
Confidence 35566677777778888999999999999987553 4566654321 0111246899999999998763
No 222
>PRK06370 mercuric reductase; Validated
Probab=98.48 E-value=1.8e-06 Score=86.36 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=78.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-------------------------------~--~~~~~~~~l 218 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-------------------------------R--EDEDVAAAV 218 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-------------------------------c--cCHHHHHHH
Confidence 6899999999999999999999999999999874310 0 124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|++++..++ ...+..... +....+.+|.||+|+| .+|+..
T Consensus 219 ~~~l~~~GV~i~~~~~V~~i~~~~~--~~~v~~~~~-----~~~~~i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 219 REILEREGIDVRLNAECIRVERDGD--GIAVGLDCN-----GGAPEITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCC--EEEEEEEeC-----CCceEEEeCEEEECcC--CCcCCC
Confidence 7888889999999999999987653 333433210 0125799999999999 666654
No 223
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.48 E-value=2.4e-06 Score=85.42 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=78.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 213 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL-------------------------------PR--EEPEISAAV 213 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC-------------------------------Cc--cCHHHHHHH
Confidence 689999999999999999999999999999986331 00 124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|+.++.++ +.+.+++... +...++.+|.||+|+| .+|+..
T Consensus 214 ~~~l~~~gV~i~~~~~V~~i~~~~--~~~~v~~~~~-----~~~~~i~~D~ViiA~G--~~p~~~ 269 (463)
T TIGR02053 214 EEALAEEGIEVVTSAQVKAVSVRG--GGKIITVEKP-----GGQGEVEADELLVATG--RRPNTD 269 (463)
T ss_pred HHHHHHcCCEEEcCcEEEEEEEcC--CEEEEEEEeC-----CCceEEEeCEEEEeEC--CCcCCC
Confidence 788888899999999999998754 3344544320 1126799999999999 666655
No 224
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.47 E-value=3.2e-06 Score=86.66 Aligned_cols=136 Identities=20% Similarity=0.136 Sum_probs=79.6
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC--------cccccc----cCceeee-------------------
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS--------LWQLKT----YDRLRLH------------------- 83 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg--------~w~~~~----~~~~~~~------------------- 83 (433)
||||||+|.||+++|..+++.|.+|+|+||....+| .+.... .+.....
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 799999999999999999999999999999875432 111100 0000000
Q ss_pred ----cCC--ceeecCCCCCC---C------C----------CCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCC
Q 013943 84 ----LPK--QFCELPLMGFP---S------E----------FPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDAT 138 (433)
Q Consensus 84 ----~~~--~~~~~~~~~~~---~------~----------~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~ 138 (433)
.+. .++.-...++. + . +..-.....+...+.+.+.+.++++++++.++++..+++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g 160 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDDG 160 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCC
Confidence 000 00000001110 0 0 000113456777788878888999999999999977542
Q ss_pred CCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 139 IRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 139 ~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
...-+...+. ..++...+.++.||+|||.++.
T Consensus 161 -~v~Gv~~~~~---~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 161 -RVRGVVAYDL---KTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred -EEEEEEEEEC---CCCcEEEEECCeEEECCCcccC
Confidence 2211222110 0222357899999999997654
No 225
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.46 E-value=3.8e-07 Score=90.30 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
..+..|..+|.+.+.+.|++++.+ +|+.+..+++.....|++.+| .++++|++|-|||.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g--------~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDG--------RTIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTS--------EEEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCC--------CEEEEeEEEECCCc
Confidence 478999999999999999998766 588888877533345777766 79999999999993
No 226
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.46 E-value=3.7e-06 Score=86.63 Aligned_cols=67 Identities=15% Similarity=-0.014 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeC-CCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDA-TIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~-~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
.+...+...+...+.+.|++++.+++|+++..++ +...+.|...+. ..++...+.+|.||+|+|.|+
T Consensus 229 vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~---~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 229 MNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN---LTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred EcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC---CCCcEEEEEeCEEEECCCHhH
Confidence 3556667777778888999999999999998763 223333444321 011234789999999999875
No 227
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.46 E-value=3e-06 Score=84.74 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=78.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-------------------------------~~--~d~~~~~~l 219 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-------------------------------PN--EDAEVSKEI 219 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------Cc--cCHHHHHHH
Confidence 689999999999999999999999999999876331 11 124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|++++.++ ..+.+.+... +++...+.+|.||+|+| .+|+..
T Consensus 220 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~----~g~~~~i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 220 AKQYKKLGVKILTGTKVESIDDNG--SKVTVTVSKK----DGKAQELEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHCCCEEEECCEEEEEEEeC--CeEEEEEEec----CCCeEEEEeCEEEECcC--cccCCC
Confidence 888888999999999999998754 3444544310 11235799999999999 666654
No 228
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.45 E-value=2.8e-06 Score=85.33 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=80.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc--ccccccCce--eeecCC-----------c----------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL--WQLKTYDRL--RLHLPK-----------Q---------- 87 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~--w~~~~~~~~--~~~~~~-----------~---------- 87 (433)
.+||+|||+|.||+++|..+++.|. |+|+||.+..+|. |....+... ..+.+. .
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3799999999999999999999997 9999999654431 111000000 000000 0
Q ss_pred ---------eeecCCCCCCC--------------CCC-----CCCCHHHHHHHHHHHHHH-cCCcceecceEEEEEEeCC
Q 013943 88 ---------FCELPLMGFPS--------------EFP-----TYPSKQQFVDYLEAYAKR-FEIRPRFNETVSQAEYDAT 138 (433)
Q Consensus 88 ---------~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~l~~~~~~-~~l~~~~~~~v~~v~~~~~ 138 (433)
++.-...++.. ..+ ...+...+...+.+.+.+ .++++++++.|+++..+++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g 160 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG 160 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence 00000011110 000 012456788888888877 6899999999999976542
Q ss_pred CCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 139 IRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 139 ~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
...-+...+. ++...+.++.||+|||.++.
T Consensus 161 -~v~Gv~~~~~-----~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 161 -RVVGVWVWNR-----ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred -EEEEEEEEEC-----CcEEEEEcCEEEECCCcccC
Confidence 2222333321 12357899999999997654
No 229
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.45 E-value=2.6e-06 Score=83.99 Aligned_cols=61 Identities=28% Similarity=0.253 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 105 SKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
....+...+.+.+.+.+++++++++|++++.+++ ..+.+.+++ .++.+|.||+|+|.++..
T Consensus 199 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-~~~~v~t~~---------~~~~a~~VV~a~G~~~~~ 259 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGG-RITGVQTGG---------GVITADAYVVALGSYSTA 259 (416)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-EEEEEEeCC---------cEEeCCEEEECCCcchHH
Confidence 4456777777888888999999999999987653 222344443 478999999999976543
No 230
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.44 E-value=7.1e-06 Score=84.00 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=36.5
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
...+||||||+|.+|+++|+.+++.|.+|+|+||....||
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 3468999999999999999999999999999999987665
No 231
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.44 E-value=5.1e-07 Score=84.60 Aligned_cols=38 Identities=42% Similarity=0.566 Sum_probs=34.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
+.+|+|||||++|+++|..|.++|++++|+|+.+.+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~ 39 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG 39 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc
Confidence 56899999999999999999999999999999876544
No 232
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=4.3e-06 Score=85.34 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=82.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC--------ccccc-----ccCceeee------cCC-------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS--------LWQLK-----TYDRLRLH------LPK------- 86 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg--------~w~~~-----~~~~~~~~------~~~------- 86 (433)
.+||||||+|.||+++|.++++.|.+|+|+||....+| .+... .-+..... ...
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 48999999999999999999999999999999864443 11100 00000000 000
Q ss_pred ------------ceeecCCCCCCCC--------------C-----CCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEE
Q 013943 87 ------------QFCELPLMGFPSE--------------F-----PTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEY 135 (433)
Q Consensus 87 ------------~~~~~~~~~~~~~--------------~-----~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~ 135 (433)
.++.--..+|... . ..-.+...+...+.+.+.+.++++..++.++++..
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~ 164 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVT 164 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEE
Confidence 0000001111100 0 00113566777787777778999999999999987
Q ss_pred eCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 136 DATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 136 ~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
++. ...-+...+. ..++...+.++.||+|||.++
T Consensus 165 ~~g-~v~Gv~~~~~---~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 165 DNK-KVVGIVAMQM---KTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred ECC-EEEEEEEEEC---CCCeEEEEEeCeEEECCCccc
Confidence 542 2222333221 123356889999999999765
No 233
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=3.7e-06 Score=86.79 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=33.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA 69 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g 69 (433)
.+||||||+|.||++||..+++.|.+|+|+||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 4799999999999999999999999999999987543
No 234
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.44 E-value=2.5e-06 Score=84.75 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=78.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..+.+.|.+|+++++.+.+. +. ...++...+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 213 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL-------------------------------RG--FDDDMRALL 213 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC-------------------------------cc--cCHHHHHHH
Confidence 579999999999999999999999999999876321 00 124566677
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++.+++|++++..+ ..+.+++.++ ..+.+|.||+|+| ..|+..
T Consensus 214 ~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g--------~~i~~D~viva~G--~~pn~~ 266 (446)
T TIGR01424 214 ARNMEGRGIRIHPQTSLTSITKTD--DGLKVTLSHG--------EEIVADVVLFATG--RSPNTK 266 (446)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcC--CeEEEEEcCC--------cEeecCEEEEeeC--CCcCCC
Confidence 778888899999999999998755 3355666554 5799999999999 666543
No 235
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.43 E-value=3.1e-07 Score=91.98 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=45.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLP 85 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~ 85 (433)
.++||||||||+.||+||..|+++|++|+|+||+..+||.-....+.++..+..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G 55 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTG 55 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccC
Confidence 479999999999999999999999999999999999999766654545444433
No 236
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.43 E-value=2.9e-06 Score=84.73 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=79.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ...++...+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~l 224 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------G--EDADAAEVL 224 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------C--CCHHHHHHH
Confidence 5799999999999999999999999999998763310 0 124566778
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.++++++++++++++.++ +.+.+.+.++ ..+.+|.|++|+| .+|+..
T Consensus 225 ~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~g--------~~l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 225 EEVFARRGMTVLKRSRAESVERTG--DGVVVTLTDG--------RTVEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHCCcEEEcCCEEEEEEEeC--CEEEEEECCC--------cEEEecEEEEeec--CCcCCC
Confidence 888888999999999999998655 3455666554 5799999999999 666654
No 237
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.42 E-value=2.9e-06 Score=86.20 Aligned_cols=143 Identities=17% Similarity=0.098 Sum_probs=82.0
Q ss_pred CCCCccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc--ccccccCce--eeecCCc--------------
Q 013943 26 SSPRCICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL--WQLKTYDRL--RLHLPKQ-------------- 87 (433)
Q Consensus 26 ~~~~~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~--w~~~~~~~~--~~~~~~~-------------- 87 (433)
+|+.....+||||||+|.||++||.++. .|.+|+|+||....+|. |....+... .-+.+..
T Consensus 2 ~~~~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d 80 (553)
T PRK07395 2 SSTILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCD 80 (553)
T ss_pred CcccccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCC
Confidence 3455556799999999999999999996 59999999998765542 111100000 0000000
Q ss_pred ----------------eeecCCCCCCC-------------CC-----CCCCCHHHHHHHHHHHHHH-cCCcceecceEEE
Q 013943 88 ----------------FCELPLMGFPS-------------EF-----PTYPSKQQFVDYLEAYAKR-FEIRPRFNETVSQ 132 (433)
Q Consensus 88 ----------------~~~~~~~~~~~-------------~~-----~~~~~~~~~~~~l~~~~~~-~~l~~~~~~~v~~ 132 (433)
++.-...+|.. .. ..-.....+.+.+.+.+.+ .++++++++.+++
T Consensus 81 ~~lv~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~ 160 (553)
T PRK07395 81 PEAVRFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALS 160 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhh
Confidence 00000001100 00 0011356677777777765 4899999999999
Q ss_pred EEEeCC-CCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 133 AEYDAT-IRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 133 v~~~~~-~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
+..+++ ....-+...+ +++...+.++.||+|||.++.
T Consensus 161 Li~~~~~g~v~Gv~~~~-----~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 161 LWLEPETGRCQGISLLY-----QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred heecCCCCEEEEEEEEE-----CCeEEEEEcCEEEEcCCCCcc
Confidence 876531 1222222222 222456899999999996543
No 238
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.42 E-value=4.7e-06 Score=85.39 Aligned_cols=38 Identities=21% Similarity=0.494 Sum_probs=35.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
.+||||||+|++|+++|+.+++.|.+|+|+||....||
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 58999999999999999999999999999999987665
No 239
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.42 E-value=1.1e-05 Score=82.76 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=37.0
Q ss_pred ccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 30 CICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 30 ~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
....+||+|||+|.+|+++|..+.++|.+|+|||+....||
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 35579999999999999999999999999999999876665
No 240
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.41 E-value=6.3e-06 Score=84.52 Aligned_cols=67 Identities=13% Similarity=-0.040 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHHcCCcceecceEEEEEEeCC---CCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 105 SKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDAT---IRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~---~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
+...+...+.+.+.+.++++..++.++++..+++ ....-+...+. ..++...+.++.||+|||.++.
T Consensus 138 tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 138 TGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCeEEEEEeCeEEECCCCCcc
Confidence 4567788888888888999999999999876531 12221222110 0223457899999999997653
No 241
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.41 E-value=4e-06 Score=83.33 Aligned_cols=102 Identities=17% Similarity=0.089 Sum_probs=79.1
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. +. -..++.+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-------------------------------~~--~d~~~~~~~ 213 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-------------------------------RS--FDSMISETI 213 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999886331 00 124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++.++.|++++...+ +...+.+.++ ...+.+|.||+|+| .+|+..
T Consensus 214 ~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~v~~~~g-------~~~i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 214 TEEYEKEGINVHKLSKPVKVEKTVE-GKLVIHFEDG-------KSIDDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHcCCEEEcCCEEEEEEEeCC-ceEEEEECCC-------cEEEEcCEEEEeeC--CCcCcc
Confidence 7888888999999999999986543 3344555543 25799999999999 666654
No 242
>PLN02507 glutathione reductase
Probab=98.40 E-value=3.6e-06 Score=84.61 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=79.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+- +. ...++...+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-------------------------------~~--~d~~~~~~l 250 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-------------------------------RG--FDDEMRAVV 250 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999876321 00 125567777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|++++..+ +.+.+.+.++ .++.+|.|++|+| .+|+..
T Consensus 251 ~~~l~~~GI~i~~~~~V~~i~~~~--~~~~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 251 ARNLEGRGINLHPRTNLTQLTKTE--GGIKVITDHG--------EEFVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEeC--CeEEEEECCC--------cEEEcCEEEEeec--CCCCCC
Confidence 888888899999999999998754 3455665554 5799999999999 666554
No 243
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.40 E-value=2.8e-06 Score=84.05 Aligned_cols=99 Identities=30% Similarity=0.391 Sum_probs=76.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. + ....++...+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~--~~~~~~~~~~ 185 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------K--LFDEEMNQIV 185 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------c--ccCHHHHHHH
Confidence 6899999999999999999999999999998763310 0 0124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|.+++.++ . + +...++ ..+.+|.||+|+| .+|+.+
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~~~--~-~-v~~~~g--------~~i~~D~vi~a~G--~~p~~~ 236 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEGEE--R-V-KVFTSG--------GVYQADMVILATG--IKPNSE 236 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEecCC--C-E-EEEcCC--------CEEEeCEEEECCC--ccCCHH
Confidence 888888899999999999997643 2 2 344554 5799999999999 555543
No 244
>PRK07846 mycothione reductase; Reviewed
Probab=98.39 E-value=3.3e-06 Score=83.94 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=75.4
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++.+.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-------------------------------~~--~d~~~~~~l 213 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-------------------------------RH--LDDDISERF 213 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-------------------------------cc--cCHHHHHHH
Confidence 689999999999999999999999999999976331 00 123445555
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPE 179 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~ 179 (433)
.+.. +.++++++++++++++..+ +.+.+.+.++ ..+.+|.|++|+| .+|+.+.
T Consensus 214 ~~l~-~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g--------~~i~~D~vl~a~G--~~pn~~~ 266 (451)
T PRK07846 214 TELA-SKRWDVRLGRNVVGVSQDG--SGVTLRLDDG--------STVEADVLLVATG--RVPNGDL 266 (451)
T ss_pred HHHH-hcCeEEEeCCEEEEEEEcC--CEEEEEECCC--------cEeecCEEEEEEC--CccCccc
Confidence 5544 4578899999999998755 3455666554 5799999999999 6666543
No 245
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.39 E-value=2.9e-06 Score=85.54 Aligned_cols=135 Identities=16% Similarity=0.089 Sum_probs=78.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc--ccccccCce--eeecCCc---------------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL--WQLKTYDRL--RLHLPKQ--------------------- 87 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~--w~~~~~~~~--~~~~~~~--------------------- 87 (433)
.+||||||+|.||+++|.++++ |.+|+|+||....+|. |....+... .-+.+..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 6899999999999999999976 8999999998754442 111100000 0000000
Q ss_pred ---------eeecCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCC
Q 013943 88 ---------FCELPLMGFPSE--------------FP------TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDAT 138 (433)
Q Consensus 88 ---------~~~~~~~~~~~~--------------~~------~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~ 138 (433)
++.-...+|... .+ +......+.+.+.+.+. .+++++.++.++++..++.
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g 160 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIENG 160 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecCC
Confidence 000001111100 00 11234567777777665 5889999999999865432
Q ss_pred CCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 139 IRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 139 ~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
...-+...+. .++...+.++.||+|||.++.
T Consensus 161 -~v~Gv~~~~~----~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 161 -RCIGVLTKDS----EGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred -EEEEEEEEEC----CCcEEEEEcCeEEEecCCCcc
Confidence 2222333332 233457899999999996553
No 246
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.39 E-value=2.9e-06 Score=84.44 Aligned_cols=100 Identities=23% Similarity=0.273 Sum_probs=76.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
-.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ....++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~-~~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP-------------------------------D-SFDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc-------------------------------h-hcCHHHHHH
Confidence 36899999999999999999999999999988763210 0 013567788
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
+.+.+++.+++++++++|++++.++ ..+.+.+++ ..+.+|.||+|+| ..|+.
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~d~vi~a~G--~~p~~ 248 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIGED--KVEGVVTDK---------GEYEADVVIVATG--VKPNT 248 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEecCC--cEEEEEeCC---------CEEEcCEEEECcC--CCcCH
Confidence 8888899999999999999996533 333344433 4689999999999 55553
No 247
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=1.1e-05 Score=82.63 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=33.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA 69 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g 69 (433)
..||||||+|.||+++|.++++.|.+|+|+||....+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 5699999999999999999999999999999987543
No 248
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.39 E-value=1.4e-06 Score=81.62 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=87.8
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccc---cCCcchhhhHHHHhh---cc---hHHHHHHHHHHHH
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEM---LGKSTFGLSMWLLKW---LP---MRLVDKLLLVVSW 275 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~---~~~~~~~~~~~~~~~---l~---~~~~~~~~~~~~~ 275 (433)
..|+|||+|+.|+-+|..+++.|++|+++.+.+. +-.+.. .|.=++.......++ .| +.+...+.+.-.+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k-~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPK-LGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcc-ccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 4799999999999999999999999999998882 211111 112223322222222 23 3333333333333
Q ss_pred HhhccccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCC----eEEEcCCcEecccEEEEc
Q 013943 276 LMLGDTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRY----AVEFVNGRCENFDAIILA 349 (433)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~----~v~~~~g~~~~~D~vi~a 349 (433)
.+++-++..++..-....=.+-....+...+.+-+.+.+++.+|++++. |.++..+ .+.+.+|+++.||.+|+|
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilA 162 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILA 162 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEe
Confidence 3333333444432221111111112223345566777788899999987 7777655 266678889999999999
Q ss_pred cCCC
Q 013943 350 TGYR 353 (433)
Q Consensus 350 tG~~ 353 (433)
||-.
T Consensus 163 tGG~ 166 (408)
T COG2081 163 TGGK 166 (408)
T ss_pred cCCc
Confidence 9933
No 249
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.38 E-value=5e-06 Score=83.16 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=77.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-------------------------------~~--~d~~~~~~~ 221 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-------------------------------PA--ADKDIVKVF 221 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-------------------------------Cc--CCHHHHHHH
Confidence 689999999999999999999999999999987431 00 124556667
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++. +++++++.|+.++..+ +.+.++..++ .++..++.+|.||+|+| .+|+..
T Consensus 222 ~~~l~~~-v~i~~~~~v~~i~~~~--~~~~v~~~~~----~~~~~~i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 222 TKRIKKQ-FNIMLETKVTAVEAKE--DGIYVTMEGK----KAPAEPQRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHhhc-eEEEcCCEEEEEEEcC--CEEEEEEEeC----CCcceEEEeCEEEEeec--ccccCC
Confidence 7777666 8899999999998665 3444554432 12235799999999999 666654
No 250
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.38 E-value=2.4e-06 Score=83.33 Aligned_cols=60 Identities=23% Similarity=0.181 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-ceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIR-PRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~-~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
.....+...+...+.+.+.. +..++.+..++.. . ..+.|.+.++ .+.+|.||+|+|.++.
T Consensus 153 ~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g---------~i~a~~vv~a~G~~~~ 213 (387)
T COG0665 153 LDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGG---------TIEADKVVLAAGAWAG 213 (387)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCc---------cEEeCEEEEcCchHHH
Confidence 45567778888888888854 5668888888876 3 5677888875 4999999999997654
No 251
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.37 E-value=2.8e-06 Score=90.10 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=79.4
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++++|||||+.|+.+|..|.+.|.+|++++..+.+.. . .-..+....+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------------------~-~ld~~~~~~l 193 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------------------E-QLDQMGGEQL 193 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------------------h-hcCHHHHHHH
Confidence 5799999999999999999999999999998763210 0 0124556778
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
.+.+++.++++++++.++++..+++.....+.+.+| ..+.+|.||+|+| .+|+.
T Consensus 194 ~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG--------~~i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 194 RRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG--------SELEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC--------CEEEcCEEEECCC--cccCc
Confidence 888889999999999999997654323445666665 6899999999999 66654
No 252
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.37 E-value=5.5e-06 Score=82.79 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=77.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..+.+.|.+|+++|+.+.+. +. ...++...+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-------------------------------~~--~d~~~~~~l 221 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-------------------------------PG--TDTETAKTL 221 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-------------------------------CC--CCHHHHHHH
Confidence 689999999999999999999999999999876331 11 124456777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|++++..+ +.+.+..... .+++...+.+|.|++|+| .+|+..
T Consensus 222 ~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~---~~g~~~~i~~D~vi~a~G--~~pn~~ 279 (466)
T PRK06115 222 QKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPA---AGGAAETLQADYVLVAIG--RRPYTQ 279 (466)
T ss_pred HHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEc---CCCceeEEEeCEEEEccC--Cccccc
Confidence 778888899999999999998754 3344443311 011236799999999999 666543
No 253
>PRK14694 putative mercuric reductase; Provisional
Probab=98.37 E-value=4.8e-06 Score=83.29 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=76.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||+|+.|+.+|..|.+.|.+|+++++...+ + ....++...+
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l--------------------------------~--~~~~~~~~~l 224 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVL--------------------------------S--QEDPAVGEAI 224 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------------------------------C--CCCHHHHHHH
Confidence 68999999999999999999999999999864311 0 0124566778
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|.+++.++ ..+.+.+.+ .++.+|.||+|+| .+|+..
T Consensus 225 ~~~l~~~GI~v~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~D~vi~a~G--~~pn~~ 276 (468)
T PRK14694 225 EAAFRREGIEVLKQTQASEVDYNG--REFILETNA---------GTLRAEQLLVATG--RTPNTE 276 (468)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEECC---------CEEEeCEEEEccC--CCCCcC
Confidence 888888999999999999998755 444454433 3699999999999 666554
No 254
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.36 E-value=4.2e-06 Score=81.30 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=36.4
Q ss_pred CeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCcccc
Q 013943 35 GPVIVGAGPSGLATAACLKERG--IPSILLERSNCIASLWQL 74 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~gg~w~~ 74 (433)
.|+|||||++||++|++|++.+ .+++|+|+.+.+||....
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 5999999999999999999998 899999999999986444
No 255
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.36 E-value=1.5e-05 Score=81.09 Aligned_cols=39 Identities=26% Similarity=0.512 Sum_probs=36.1
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
...+||||||+| +|+++|..+++.|.+|+|+||.+.+||
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 457999999999 899999999999999999999987776
No 256
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.36 E-value=8.9e-06 Score=80.20 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 107 QQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 107 ~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
..+.-....-+.+.|.++...++|+++..+++ .|-|...+. ..++...++++.||-|||.|+.
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~--v~gV~~~D~---~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREGG--VWGVEVEDR---ETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecCC--EEEEEEEec---CCCcEEEEEcCEEEECCCccHH
Confidence 34444555567788999999999999999884 666777653 1355788999999999998753
No 257
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.36 E-value=7.3e-06 Score=84.04 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=34.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC---CCEEEEecCCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERG---IPSILLERSNCIAS 70 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g---~~v~iie~~~~~gg 70 (433)
.+||+|||+|.||++||..+++.| .+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 479999999999999999999998 89999999875543
No 258
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.35 E-value=5.3e-06 Score=82.41 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=77.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ...++...+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-------------------------------~~--~~~~~~~~l 205 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-------------------------------PR--EDRDIADNI 205 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------CC--cCHHHHHHH
Confidence 589999999999999999999999999999976331 01 124566778
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|++++.++ ..+.+...+ ..+.+|.|++|+| .+|+..
T Consensus 206 ~~~l~~~gV~v~~~~~v~~i~~~~--~~v~v~~~~---------g~i~~D~vl~a~G--~~pn~~ 257 (441)
T PRK08010 206 ATILRDQGVDIILNAHVERISHHE--NQVQVHSEH---------AQLAVDALLIASG--RQPATA 257 (441)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEcC---------CeEEeCEEEEeec--CCcCCC
Confidence 888889999999999999998764 445555443 3588999999999 666543
No 259
>PLN02815 L-aspartate oxidase
Probab=98.35 E-value=8.5e-06 Score=83.25 Aligned_cols=140 Identities=12% Similarity=0.019 Sum_probs=80.9
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc--cccccc-------Cceee-------------------
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL--WQLKTY-------DRLRL------------------- 82 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~--w~~~~~-------~~~~~------------------- 82 (433)
...+||||||+|.||+++|+.+++.| +|+|+||....+|. |....+ +....
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 33589999999999999999999999 99999998865541 111000 00000
Q ss_pred ----ecCC--ceeecCCCCCCC--------------C-----CCCCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEe
Q 013943 83 ----HLPK--QFCELPLMGFPS--------------E-----FPTYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYD 136 (433)
Q Consensus 83 ----~~~~--~~~~~~~~~~~~--------------~-----~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~ 136 (433)
..+. .++.-...+|.. . ...-.+...+...+.+.+.+. +++++.++.++++-.+
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~ 185 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence 0000 000000011100 0 001124566777777777654 8899999999988765
Q ss_pred CCCC---eEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 137 ATIR---FWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 137 ~~~~---~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
++.+ ..-+...+. .+++...+.++.||+|||.+..
T Consensus 186 ~~g~~~~v~Gv~~~~~---~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 186 QDGGSIVCHGADVLDT---RTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred cCCCccEEEEEEEEEc---CCCeEEEEEeceEEEcCCccee
Confidence 3211 222322110 0333567899999999996653
No 260
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.34 E-value=3.1e-06 Score=83.87 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=75.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. .-..++...+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~---------------------------------~~d~~~~~~l 195 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK---------------------------------LMDADMNQPI 195 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch---------------------------------hcCHHHHHHH
Confidence 5799999999999999999999999999998763311 0124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|++++. .. +++.++ ..+.+|.|++|+| .+|+.+
T Consensus 196 ~~~l~~~gI~i~~~~~v~~i~~----~~--v~~~~g--------~~~~~D~vl~a~G--~~pn~~ 244 (438)
T PRK13512 196 LDELDKREIPYRLNEEIDAING----NE--VTFKSG--------KVEHYDMIIEGVG--THPNSK 244 (438)
T ss_pred HHHHHhcCCEEEECCeEEEEeC----CE--EEECCC--------CEEEeCEEEECcC--CCcChH
Confidence 8888888999999999999863 22 555554 5789999999999 666543
No 261
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.34 E-value=3.7e-06 Score=84.04 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHcC-CcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 106 KQQFVDYLEAYAKRFE-IRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 106 ~~~~~~~l~~~~~~~~-l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
...+...+.+.+++.+ ++++++++|++++..++ +.|.+.+.+. ..++..++.+++||+|+|.++.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~v~~~~~---~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWTVTVKDL---KTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEEEEEEEc---CCCceEEEEcCEEEECCCcchH
Confidence 3455666777777776 89999999999988654 3477765431 0111236899999999998763
No 262
>PRK14727 putative mercuric reductase; Provisional
Probab=98.33 E-value=6.6e-06 Score=82.50 Aligned_cols=98 Identities=20% Similarity=0.169 Sum_probs=76.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++...+ + ....++...+
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l--------------------------------~--~~d~~~~~~l 234 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL--------------------------------F--REDPLLGETL 234 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC--------------------------------C--cchHHHHHHH
Confidence 68999999999999999999999999999874311 0 0124566778
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|+.++..+ ..+.+...+ ..+.+|.||+|+| ..|+..
T Consensus 235 ~~~L~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~---------g~i~aD~VlvA~G--~~pn~~ 286 (479)
T PRK14727 235 TACFEKEGIEVLNNTQASLVEHDD--NGFVLTTGH---------GELRAEKLLISTG--RHANTH 286 (479)
T ss_pred HHHHHhCCCEEEcCcEEEEEEEeC--CEEEEEEcC---------CeEEeCEEEEccC--CCCCcc
Confidence 888888999999999999998765 445555543 3588999999999 555543
No 263
>PRK07208 hypothetical protein; Provisional
Probab=98.32 E-value=9.5e-07 Score=88.78 Aligned_cols=49 Identities=35% Similarity=0.529 Sum_probs=43.1
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCc
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDR 79 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~ 79 (433)
++++||+|||||++||++|..|.+.|++|+|+|+++.+||.+......+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g 50 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG 50 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC
Confidence 4678999999999999999999999999999999999999766544433
No 264
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.32 E-value=1.6e-06 Score=91.66 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=73.1
Q ss_pred CeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCC---C-Cc-ccccccCceeeecC-------------Cce-eecCC
Q 013943 35 GPVIVGAGPSGLATAACLKER--GIPSILLERSNCI---A-SL-WQLKTYDRLRLHLP-------------KQF-CELPL 93 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~--g~~v~iie~~~~~---g-g~-w~~~~~~~~~~~~~-------------~~~-~~~~~ 93 (433)
+|+||||||+|+++|..|++. |++|+|+|+++.. | |. ...+....+....+ ... ..+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 699999999999999999998 8999999998753 2 11 00000000000000 000 00000
Q ss_pred CCCCCCCCC--CCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 94 MGFPSEFPT--YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 94 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
......-.. ...+.++.+.|.+.+.+.+++++++++|+.++. ...++|.||.|+|.
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~----------------------~~~~~D~VVgADG~ 139 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA----------------------LAADADLVIASDGL 139 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh----------------------hhcCCCEEEEcCCC
Confidence 000000011 257899999999999999999999988754321 12468999999997
Q ss_pred CCC
Q 013943 172 NAE 174 (433)
Q Consensus 172 ~~~ 174 (433)
.+.
T Consensus 140 ~S~ 142 (765)
T PRK08255 140 NSR 142 (765)
T ss_pred CHH
Confidence 663
No 265
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.32 E-value=7e-06 Score=81.65 Aligned_cols=99 Identities=21% Similarity=0.193 Sum_probs=74.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++...+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-------------------------------~--~d~~~~~~l 216 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-------------------------------H--LDEDISDRF 216 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-------------------------------c--cCHHHHHHH
Confidence 6899999999999999999999999999998763310 0 113444555
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.. +.+++++++++|++++.++ +.+.+++.++ .++.+|.|++|+| .+|+..
T Consensus 217 ~~~~-~~gI~i~~~~~V~~i~~~~--~~v~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 268 (452)
T TIGR03452 217 TEIA-KKKWDIRLGRNVTAVEQDG--DGVTLTLDDG--------STVTADVLLVATG--RVPNGD 268 (452)
T ss_pred HHHH-hcCCEEEeCCEEEEEEEcC--CeEEEEEcCC--------CEEEcCEEEEeec--cCcCCC
Confidence 5544 3578899999999998755 3455666554 5799999999999 666654
No 266
>PTZ00058 glutathione reductase; Provisional
Probab=98.31 E-value=9.3e-06 Score=82.30 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=78.0
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. -..++.+.+
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~i~~~l 284 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL-------------------------------RK--FDETIINEL 284 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------cc--CCHHHHHHH
Confidence 679999999999999999999999999999876331 00 124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++..|.+++.+++ ..+.+...++ ...+.+|.|++|+| .+|+..
T Consensus 285 ~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~-------~~~i~aD~VlvA~G--r~Pn~~ 339 (561)
T PTZ00058 285 ENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDG-------RKYEHFDYVIYCVG--RSPNTE 339 (561)
T ss_pred HHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCC-------CEEEECCEEEECcC--CCCCcc
Confidence 7888888999999999999986543 2344443332 25799999999999 666654
No 267
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.31 E-value=7.9e-06 Score=81.73 Aligned_cols=101 Identities=18% Similarity=0.104 Sum_probs=77.2
Q ss_pred CCeEEECCChHHHHHHHHHHHc---CCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKER---GIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFV 110 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~---g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (433)
.+|+|||||+.|+.+|..+... |.+|+++++.+.+. +. -..++.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-------------------------------~~--~d~~~~ 234 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-------------------------------RG--FDSTLR 234 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-------------------------------cc--cCHHHH
Confidence 6799999999999999766554 89999999876331 00 125667
Q ss_pred HHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 111 DYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 111 ~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
+.+.+.+++.++++++++.+++++..++ ....+.+.++ ..+.+|.|++|+| .+|+..
T Consensus 235 ~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~~v~~~~g--------~~i~~D~vl~a~G--~~Pn~~ 291 (486)
T TIGR01423 235 KELTKQLRANGINIMTNENPAKVTLNAD-GSKHVTFESG--------KTLDVDVVMMAIG--RVPRTQ 291 (486)
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceEEEEEcCC--------CEEEcCEEEEeeC--CCcCcc
Confidence 7888888889999999999999987543 3344555554 5799999999999 666543
No 268
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.31 E-value=4e-06 Score=88.77 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=78.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
.++++|||||+.|+.+|..|.+.|.+|+++++.+.+... .-..+....
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~--------------------------------~ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK--------------------------------QLDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh--------------------------------hcCHHHHHH
Confidence 368999999999999999999999999999987633100 012345566
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
+.+.+++.++++++++.++++..++ ....+.+.+| ..+.+|.||+|+| .+|+..
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~dG--------~~i~~D~Vi~a~G--~~Pn~~ 241 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKDG--------SSLEADLIVMAAG--IRPNDE 241 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECCC--------CEEEcCEEEECCC--CCcCcH
Confidence 7777888899999999998887543 3344666666 6899999999999 666543
No 269
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.30 E-value=9.8e-06 Score=83.22 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=30.8
Q ss_pred eEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 013943 36 PVIVGAGPSGLATAACLKERGIPSILLERSNCI 68 (433)
Q Consensus 36 VvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~ 68 (433)
|||||+|.||++||..+++.|.+|+|+||....
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 799999999999999999999999999998733
No 270
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.29 E-value=2.5e-05 Score=79.63 Aligned_cols=39 Identities=21% Similarity=0.470 Sum_probs=35.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
..+||+|||+|.+|+++|..+++.|.+|+|||+....||
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG 43 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGG 43 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 368999999999999999999999999999999876665
No 271
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.29 E-value=1.9e-05 Score=81.84 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=33.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA 69 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g 69 (433)
.+||||||+|.||+.+|.++++.|.+|+|+|+....+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 3799999999999999999999999999999976443
No 272
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.29 E-value=8.8e-06 Score=83.17 Aligned_cols=137 Identities=18% Similarity=0.114 Sum_probs=79.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCCCc--cccccc-------Cceee-------------------
Q 013943 33 VPGPVIVGAGPSGLATAACLKER--GIPSILLERSNCIASL--WQLKTY-------DRLRL------------------- 82 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~--g~~v~iie~~~~~gg~--w~~~~~-------~~~~~------------------- 82 (433)
.+||+|||+|.||+.||..+++. |.+|+|+||....++. |..... +....
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 47999999999999999999987 5799999998755542 111000 00000
Q ss_pred ----ecCCc--eeecCCCCCC---C------CCC----------CCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEe
Q 013943 83 ----HLPKQ--FCELPLMGFP---S------EFP----------TYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYD 136 (433)
Q Consensus 83 ----~~~~~--~~~~~~~~~~---~------~~~----------~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~ 136 (433)
..+.. ++.--..+|. + ... .-.+...+...+.+.+.+. ++++..++.++++..+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 00000 0000001110 0 000 0124567777777766664 7888889999998765
Q ss_pred CCCCeEEEEE-eecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 137 ATIRFWRVKT-TVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 137 ~~~~~~~v~~-~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
++ ...-+.. +.. +++...+.++.||+|||.++.
T Consensus 163 ~g-~v~Gv~~~~~~----~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 163 DG-RVCGLVAIEMA----EGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred CC-EEEEEEEEEcC----CCcEEEEecCEEEEcCCCCcc
Confidence 42 2211211 111 223468999999999997654
No 273
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.29 E-value=9.5e-06 Score=81.66 Aligned_cols=99 Identities=22% Similarity=0.098 Sum_probs=76.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.. +. + .-..++.+.+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~--~~d~~~~~~l 228 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PL-------------------------------R--GFDRQCSEKV 228 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-cc-------------------------------c--cCCHHHHHHH
Confidence 479999999999999999999999999998642 10 0 0124566777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++.++.+..++... ....+.+.++ ..+.+|.|++|+| .+|+..
T Consensus 229 ~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~g--------~~i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 229 VEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSDG--------TTELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECCC--------CEEEcCEEEEeeC--CCCCcc
Confidence 888888899999999998887654 3345666554 5689999999999 666654
No 274
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.28 E-value=2.3e-05 Score=79.23 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=34.3
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
..+||||||+| +|+++|+++++.|.+|+|+||....||
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 36899999999 999999999999999999999876553
No 275
>PRK13748 putative mercuric reductase; Provisional
Probab=98.28 E-value=8.5e-06 Score=83.61 Aligned_cols=98 Identities=19% Similarity=0.123 Sum_probs=76.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++...+ +. ...++...+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l--------------------------------~~--~d~~~~~~l 316 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLF--------------------------------FR--EDPAIGEAV 316 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc--------------------------------cc--cCHHHHHHH
Confidence 68999999999999999999999999999875311 00 124566778
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++++++|+.++.++ ..+.+.+.+ ..+.+|.||+|+| .+|+..
T Consensus 317 ~~~l~~~gI~i~~~~~v~~i~~~~--~~~~v~~~~---------~~i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 317 TAAFRAEGIEVLEHTQASQVAHVD--GEFVLTTGH---------GELRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHCCCEEEcCCEEEEEEecC--CEEEEEecC---------CeEEeCEEEEccC--CCcCCC
Confidence 888888999999999999998654 445555443 3589999999999 666654
No 276
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.27 E-value=8.6e-06 Score=80.09 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=82.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
.++++|||+|+.|+.+|..|++.|++|+++|+.+.+++.. .. .++.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~-------------------------------~~-~~~~~~ 183 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL-------------------------------LD-PEVAEE 183 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh-------------------------------hh-HHHHHH
Confidence 5789999999999999999999999999999998665321 01 678888
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEE-EEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWR-VKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~-v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
+.+..+..+++++++..+..++...+....+ +...++ ..+.+|.+++++| .+|+
T Consensus 184 ~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 184 LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG--------EEIKADLVIIGPG--ERPN 238 (415)
T ss_pred HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC--------cEEEeeEEEEeec--cccc
Confidence 9999999999999999999999876422221 344443 7899999999999 6664
No 277
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.27 E-value=1.3e-05 Score=80.22 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=76.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+++|||||+.|+.+|..|.+.|.+|+++++.. +. + ....++.+.+
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l-------------------------------~--~~d~~~~~~l 226 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-LL-------------------------------R--GFDQDCANKV 226 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc-cc-------------------------------c--ccCHHHHHHH
Confidence 579999999999999999999999999998642 10 0 0125667788
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.++++++++.++.++..+ ....++..++ . +..++.+|.|++|+| ..|+..
T Consensus 227 ~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~~----~-~~~~i~~D~vl~a~G--~~pn~~ 282 (484)
T TIGR01438 227 GEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTDS----T-NGIEEEYDTVLLAIG--RDACTR 282 (484)
T ss_pred HHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEecC----C-cceEEEeCEEEEEec--CCcCCC
Confidence 888888999999999998887654 3344555432 1 124799999999999 666543
No 278
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.26 E-value=1.8e-05 Score=81.15 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=33.2
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERG--IPSILLERSNCIAS 70 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~gg 70 (433)
.+||+|||+|.||++||..+++.+ .+|+|+||....+|
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 479999999999999999999874 79999999875443
No 279
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.25 E-value=1.9e-05 Score=80.52 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=35.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
.+||+|||+|++|+++|..+++.|.+|+||||...+||
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 58999999999999999999999999999999876664
No 280
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=1.6e-05 Score=79.46 Aligned_cols=102 Identities=16% Similarity=0.235 Sum_probs=77.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. ....++...+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------------------------------~~d~~~~~~~ 216 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP---------------------------------LEDPEVSKQA 216 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc---------------------------------chhHHHHHHH
Confidence 6899999999999999999999999999998763310 0124567777
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++. +++++++++++++..++ ..++++..++ +..++.+|.||+|+| .+|+..
T Consensus 217 ~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~~~~~------~~~~i~~D~vi~a~G--~~p~~~ 271 (460)
T PRK06292 217 QKILSKE-FKIKLGAKVTSVEKSGD-EKVEELEKGG------KTETIEADYVLVATG--RRPNTD 271 (460)
T ss_pred HHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEEEcCC------ceEEEEeCEEEEccC--CccCCC
Confidence 7777777 99999999999987553 2344432221 135799999999999 667665
No 281
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.25 E-value=7.1e-06 Score=75.86 Aligned_cols=150 Identities=13% Similarity=0.185 Sum_probs=105.9
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++++|||+|..||.++.-..+.|-+|+++|-.+.+++.. ..++...+
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m---------------------------------D~Eisk~~ 258 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM---------------------------------DGEISKAF 258 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc---------------------------------CHHHHHHH
Confidence 689999999999999999999999999999988776531 24567778
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCccCCCC------CC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIEGSDE------FG 187 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~g~~~------~~ 187 (433)
+..+...++.++++++|+.++..++ +.+.+...+. ..++.+++++|.+++|+| .+|..-.+ |++. ..
T Consensus 259 qr~L~kQgikF~l~tkv~~a~~~~d-g~v~i~ve~a---k~~k~~tle~DvlLVsiG--RrP~t~GL-gle~iGi~~D~r 331 (506)
T KOG1335|consen 259 QRVLQKQGIKFKLGTKVTSATRNGD-GPVEIEVENA---KTGKKETLECDVLLVSIG--RRPFTEGL-GLEKIGIELDKR 331 (506)
T ss_pred HHHHHhcCceeEeccEEEEeeccCC-CceEEEEEec---CCCceeEEEeeEEEEEcc--CcccccCC-Chhhcccccccc
Confidence 8888889999999999999999887 3666776653 234568999999999999 77765432 1111 11
Q ss_pred CceeeccCCCCCCCCCCCeEEEECCCCcHHHHHHHHhccC
Q 013943 188 GDIRHTSLYKSGEDFRGKRVLVVGCGNSGMEVCLDLCNHD 227 (433)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g 227 (433)
+++..-..+ ...=.++-.||.-..|.-+|....+.|
T Consensus 332 ~rv~v~~~f----~t~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 332 GRVIVNTRF----QTKVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred cceeccccc----cccCCceEEecccCCcchhhhhhhhhc
Confidence 111111100 011236777777666666666655554
No 282
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.25 E-value=2.5e-05 Score=86.20 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=35.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
-+||||||+|.||+++|.++++.|.+|+++||....||
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 48999999999999999999999999999999987776
No 283
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.24 E-value=3.6e-05 Score=78.92 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=36.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~ 71 (433)
..+||+|||+|++|+++|..+.++|.+|+|+|+....||.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~ 54 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 3589999999999999999999999999999998877764
No 284
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.21 E-value=1.7e-06 Score=85.92 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=39.5
Q ss_pred CccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 013943 29 RCICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71 (433)
Q Consensus 29 ~~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~ 71 (433)
.....++|||||||+|||+||+.|.+.|++|+|+|.++.+||.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 4456789999999999999999999999999999999999984
No 285
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.21 E-value=2.3e-05 Score=80.01 Aligned_cols=39 Identities=33% Similarity=0.523 Sum_probs=35.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--CCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSN--CIAS 70 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~--~~gg 70 (433)
..+||||||+|.+|+++|..+++.|.+|+|+||.+ ..||
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 45899999999999999999999999999999998 5565
No 286
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.19 E-value=2.2e-05 Score=80.87 Aligned_cols=111 Identities=17% Similarity=0.092 Sum_probs=77.4
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
.+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+.. .-..++..++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~---------------------------------~~d~eis~~l 359 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP---------------------------------LLDADVAKYF 359 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc---------------------------------cCCHHHHHHH
Confidence 5799999999999999999999999999999874310 0124456666
Q ss_pred HHHH-HHcCCcceecceEEEEEEeCCCCeEEEEEeecC-cCCC------ceeEEEEeCEEEEccCCCCCCccCC
Q 013943 114 EAYA-KRFEIRPRFNETVSQAEYDATIRFWRVKTTVGG-QKCG------VEEMEYRCRWLVVATGENAEAVVPE 179 (433)
Q Consensus 114 ~~~~-~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~-~~~~------~~~~~~~~d~viiAtG~~~~p~~p~ 179 (433)
.+.. ++.+++++.++.|+.++..++...+++...+.. .... ....++.+|.|++|+| .+|+...
T Consensus 360 ~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG--r~Pnt~~ 431 (659)
T PTZ00153 360 ERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG--RKPNTNN 431 (659)
T ss_pred HHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC--cccCCcc
Confidence 6644 567899999999999987553233445433210 0000 0124799999999999 6676543
No 287
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.19 E-value=4.4e-05 Score=73.23 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=44.7
Q ss_pred HHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 110 VDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 110 ~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
-+.+.+.+.+. +.+++++++|+++++..+ +.|.|.+.+. ..++...+++++|++..|..+
T Consensus 184 Tr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W~v~~~~~---~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 184 TRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GRWEVKVKDL---KTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHhCCCcEEEecCEeCeeEECCC-CCEEEEEEec---CCCCeEEEECCEEEECCchHh
Confidence 33333444444 889999999999999876 6799988652 123457999999999999754
No 288
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.18 E-value=3.1e-05 Score=76.47 Aligned_cols=91 Identities=23% Similarity=0.233 Sum_probs=71.8
Q ss_pred CCeEEECCChHHHHHHHHHHH--------------cCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCC
Q 013943 34 PGPVIVGAGPSGLATAACLKE--------------RGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSE 99 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~--------------~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (433)
.+|+|||||+.|+.+|..|.+ .+.+|+++++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 589999999999999999875 367899999876331
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 100 FPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 100 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
+. -..++.+++.+.+++.+++++++++|++++.+ . +.+.+| .++.+|.+|+|+|.
T Consensus 224 -~~--~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----~--v~~~~g--------~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 224 -GS--FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----E--VVLKDG--------EVIPTGLVVWSTGV 278 (424)
T ss_pred -cc--CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----E--EEECCC--------CEEEccEEEEccCC
Confidence 11 12456778888888999999999999988642 2 566665 68999999999994
No 289
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.17 E-value=4.9e-05 Score=77.27 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=33.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
..+||||||+|.||+++|..+++. .+|+|+||....+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 348999999999999999999886 89999999876554
No 290
>PLN02546 glutathione reductase
Probab=98.14 E-value=2.7e-05 Score=79.02 Aligned_cols=102 Identities=17% Similarity=0.092 Sum_probs=76.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
-.+|+|||+|+.|+.+|..|.+.+.+|+++++.+.+.. .-..++..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~---------------------------------~~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR---------------------------------GFDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc---------------------------------ccCHHHHHH
Confidence 36899999999999999999999999999998763310 013556677
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
+.+.+++.++++++++++++++...+ +.+.+...++ ....+|.||+|+| .+|+..
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v~v~~~~g--------~~~~~D~Viva~G--~~Pnt~ 353 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSAD-GSLSLKTNKG--------TVEGFSHVMFATG--RKPNTK 353 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCC-CEEEEEECCe--------EEEecCEEEEeec--cccCCC
Confidence 77888889999999999999976443 3344444332 3445899999999 666543
No 291
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.14 E-value=1.2e-05 Score=74.46 Aligned_cols=138 Identities=23% Similarity=0.185 Sum_probs=75.6
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC-----------CCCCccccc------c--------cCceeeecC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSN-----------CIASLWQLK------T--------YDRLRLHLP 85 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~-----------~~gg~w~~~------~--------~~~~~~~~~ 85 (433)
...+||+|||||.+|.++|..|.+.|.+|.++||.- .+||..... + ..+..+...
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~ 122 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKD 122 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeC
Confidence 355899999999999999999999999999999973 222211100 0 011111111
Q ss_pred Cc--eeecCCCCCCCCCCCC-CCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEE
Q 013943 86 KQ--FCELPLMGFPSEFPTY-PSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYR 161 (433)
Q Consensus 86 ~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 161 (433)
.. ...++...++.+..+. .+...|...+++.+... ++++. ...|.++-.+++ ...-|+..+. .+++.+..
T Consensus 123 gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~e-eGtV~sLlee~g-vvkGV~yk~k----~gee~~~~ 196 (509)
T KOG1298|consen 123 GKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLE-EGTVKSLLEEEG-VVKGVTYKNK----EGEEVEAF 196 (509)
T ss_pred CceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEe-eeeHHHHHhccC-eEEeEEEecC----CCceEEEe
Confidence 00 1112222222222221 24456677777765544 33333 234444433332 1111333322 44567889
Q ss_pred eCEEEEccCCCCC
Q 013943 162 CRWLVVATGENAE 174 (433)
Q Consensus 162 ~d~viiAtG~~~~ 174 (433)
|-.-|+|.|+++.
T Consensus 197 ApLTvVCDGcfSn 209 (509)
T KOG1298|consen 197 APLTVVCDGCFSN 209 (509)
T ss_pred cceEEEecchhHH
Confidence 9999999999874
No 292
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.13 E-value=2.6e-05 Score=78.73 Aligned_cols=64 Identities=16% Similarity=0.031 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCC
Q 013943 105 SKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAE 174 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~ 174 (433)
+...+.+.+.+.+.+. +++++.++.++++..++. ...-+...+ .++...+.++.||+|||.++.
T Consensus 134 ~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g-~v~Gv~~~~-----~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 134 AGAAIMRALIAAVRATPSITVLEGAEARRLLVDDG-AVAGVLAAT-----AGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECcChhheeecCC-EEEEEEEEe-----CCeEEEEECCEEEEcCCCCcC
Confidence 3556778787777765 899999999998865432 222233322 111347899999999997653
No 293
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.13 E-value=5.6e-05 Score=77.41 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=30.5
Q ss_pred CeEEECCChHHHHHHHHHH----HcCCCEEEEecCCC
Q 013943 35 GPVIVGAGPSGLATAACLK----ERGIPSILLERSNC 67 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~----~~g~~v~iie~~~~ 67 (433)
||||||+|.||+.||++++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999763
No 294
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.12 E-value=3e-05 Score=70.19 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=35.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~ 71 (433)
+..|+|||+|.||++++..+...+-.|+++|++...||.
T Consensus 9 lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 9 LSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred CCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 447999999999999999999998889999999988874
No 295
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.10 E-value=4e-05 Score=75.95 Aligned_cols=62 Identities=23% Similarity=0.208 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHcCCcceecceEEEEEEeC-CCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 105 SKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDA-TIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 105 ~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~-~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
....+.+.+.+.+++.+++++++++|+++..++ +.....+...++ ...+.++.||+|||.+.
T Consensus 121 ~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~-------~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 121 GGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG-------THRITTQALVLAAGGLG 183 (432)
T ss_pred CHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCC-------cEEEEcCEEEEcCCCcc
Confidence 356678888888999999999999999998753 212222333221 25789999999999653
No 296
>PRK10262 thioredoxin reductase; Provisional
Probab=98.10 E-value=2.3e-05 Score=74.45 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=74.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||+|..|+.+|..|.+.+.+|+++++.+.+. ....+...+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~~ 191 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKRL 191 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHHH
Confidence 689999999999999999999999999999875220 112344556
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++.+++++.++.+++++.++. ..-.+++.++. ..+...++.+|.||+|+| .+|+..
T Consensus 192 ~~~l~~~gV~i~~~~~v~~v~~~~~-~~~~v~~~~~~--~~~~~~~i~~D~vv~a~G--~~p~~~ 251 (321)
T PRK10262 192 MDKVENGNIILHTNRTLEEVTGDQM-GVTGVRLRDTQ--NSDNIESLDVAGLFVAIG--HSPNTA 251 (321)
T ss_pred HhhccCCCeEEEeCCEEEEEEcCCc-cEEEEEEEEcC--CCCeEEEEECCEEEEEeC--CccChh
Confidence 6667777899999999999976542 22224443320 012246899999999999 555543
No 297
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=9.2e-06 Score=78.80 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=75.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC----------CCCCcccccccCceeee-------cCCceeec---C
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSN----------CIASLWQLKTYDRLRLH-------LPKQFCEL---P 92 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~----------~~gg~w~~~~~~~~~~~-------~~~~~~~~---~ 92 (433)
.|||+|||||.||+.+|...++.|.+++++--+. .+||.-..+....+-.. .......+ .
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 4999999999999999999999999998886654 22222111110000000 00000000 0
Q ss_pred CCCCCCCC--CCCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEcc
Q 013943 93 LMGFPSEF--PTYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVAT 169 (433)
Q Consensus 93 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAt 169 (433)
...-|..+ .....+..|..++++.++.. ++.+ +...|+++...++...+-|.+.+| ..+.|+.||++|
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l-~q~~v~dli~e~~~~v~GV~t~~G--------~~~~a~aVVlTT 154 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHL-LQGEVEDLIVEEGQRVVGVVTADG--------PEFHAKAVVLTT 154 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCcee-hHhhhHHHhhcCCCeEEEEEeCCC--------CeeecCEEEEee
Confidence 00011111 11235566666677666554 3443 344677777655423455777877 899999999999
Q ss_pred CCC
Q 013943 170 GEN 172 (433)
Q Consensus 170 G~~ 172 (433)
|-+
T Consensus 155 GTF 157 (621)
T COG0445 155 GTF 157 (621)
T ss_pred ccc
Confidence 954
No 298
>PLN02576 protoporphyrinogen oxidase
Probab=98.09 E-value=5.9e-06 Score=83.48 Aligned_cols=43 Identities=28% Similarity=0.398 Sum_probs=38.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCCCCcccc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKER-GIPSILLERSNCIASLWQL 74 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~-g~~v~iie~~~~~gg~w~~ 74 (433)
..+||+|||||++||++|+.|.+. |++|+|+|+++.+||.-..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 457999999999999999999999 9999999999999986444
No 299
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.09 E-value=3.4e-05 Score=77.85 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=35.3
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIA 69 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~g 69 (433)
...+||||||+|.||+.+|..+++.|.+|+++||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 356899999999999999999999999999999987444
No 300
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.08 E-value=4.1e-06 Score=83.54 Aligned_cols=45 Identities=31% Similarity=0.393 Sum_probs=39.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcC--CCEEEEecCCCCCCcccccccC
Q 013943 34 PGPVIVGAGPSGLATAACLKERG--IPSILLERSNCIASLWQLKTYD 78 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g--~~v~iie~~~~~gg~w~~~~~~ 78 (433)
++|+|||||++||+||..|++.| ++|+|+|+++.+||........
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~ 47 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKD 47 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeC
Confidence 36999999999999999999987 8999999999999976554333
No 301
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.08 E-value=2.2e-05 Score=73.67 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=29.9
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+|+|||+|+.|+++|..|.+.|.+|+++.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 68999999999999999999999999998765
No 302
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.07 E-value=5.4e-06 Score=82.97 Aligned_cols=42 Identities=31% Similarity=0.377 Sum_probs=38.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCCCCCCcccc
Q 013943 33 VPGPVIVGAGPSGLATAACLKER----GIPSILLERSNCIASLWQL 74 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~----g~~v~iie~~~~~gg~w~~ 74 (433)
++||+|||||++||++|..|.++ |++|+|+|+++.+||.-+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 57999999999999999999998 9999999999999996544
No 303
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.04 E-value=8.1e-06 Score=82.31 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=42.1
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeee
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLH 83 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~ 83 (433)
+||+|||||++||++|..|++.|++|+|+|++..+||.-.....++...+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD 51 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFD 51 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEe
Confidence 68999999999999999999999999999999999986544433444443
No 304
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.04 E-value=1.7e-05 Score=76.91 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=32.1
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCI 68 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~ 68 (433)
.+|+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 47999999999999999999999999999987653
No 305
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=98.03 E-value=8.2e-06 Score=76.66 Aligned_cols=131 Identities=25% Similarity=0.291 Sum_probs=89.0
Q ss_pred HHhhhhcccCchHHHHhhccCCCCc------cCCCCeEEECCChHHHHHHHHHHHc--------------CCCEEEEecC
Q 013943 6 LREIEGKQAHDPIFIEKMNKSSPRC------ICVPGPVIVGAGPSGLATAACLKER--------------GIPSILLERS 65 (433)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~dVvIIGaG~aGl~~A~~L~~~--------------g~~v~iie~~ 65 (433)
|.|++.+|-.+.-++..--+++.+. .+.-.++||||||.|+.+|.+|+.. .++|+++|..
T Consensus 185 LKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~ 264 (491)
T KOG2495|consen 185 LKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAA 264 (491)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccc
Confidence 4556665555544443333233211 2335789999999999999999852 3589999888
Q ss_pred CCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEE
Q 013943 66 NCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVK 145 (433)
Q Consensus 66 ~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~ 145 (433)
+++=- .-...+.+|.++.+.+.++.++.++.|..++... ++
T Consensus 265 d~iL~---------------------------------mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~------I~ 305 (491)
T KOG2495|consen 265 DHILN---------------------------------MFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT------IH 305 (491)
T ss_pred hhHHH---------------------------------HHHHHHHHHHHHHhhhccceeecccEEEeecCcE------EE
Confidence 73300 1235667788888888899999999898876533 44
Q ss_pred EeecCcCCCceeEEEEeCEEEEccCCCCCCccCC
Q 013943 146 TTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPE 179 (433)
Q Consensus 146 ~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~ 179 (433)
...+ +++..++.|-.+|.|||...+|..-.
T Consensus 306 ~~~~----~g~~~~iPYG~lVWatG~~~rp~~k~ 335 (491)
T KOG2495|consen 306 AKTK----DGEIEEIPYGLLVWATGNGPRPVIKD 335 (491)
T ss_pred EEcC----CCceeeecceEEEecCCCCCchhhhh
Confidence 4433 44568999999999999766665543
No 306
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.02 E-value=6.3e-06 Score=79.04 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=37.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW 72 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w 72 (433)
|+||+|||||++|+++|..|.+.|.+|+|+|+++.+||..
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~ 40 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC 40 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCce
Confidence 5799999999999999999999999999999999999843
No 307
>PLN02268 probable polyamine oxidase
Probab=98.02 E-value=8.1e-06 Score=81.03 Aligned_cols=40 Identities=28% Similarity=0.508 Sum_probs=36.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ 73 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~ 73 (433)
++|+|||||++||++|+.|.+.|++|+|+|+++.+||...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 4799999999999999999999999999999999998543
No 308
>PLN02676 polyamine oxidase
Probab=98.01 E-value=1.2e-05 Score=80.62 Aligned_cols=53 Identities=32% Similarity=0.521 Sum_probs=44.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCcccccccCceeeec
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGI-PSILLERSNCIASLWQLKTYDRLRLHL 84 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~ 84 (433)
..+||+|||||++|+++|..|.+.|. +|+|+|++..+||.+....+.+.....
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~ 78 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVEL 78 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEec
Confidence 46899999999999999999999998 699999999999987765555443333
No 309
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.98 E-value=5.1e-05 Score=72.64 Aligned_cols=107 Identities=20% Similarity=0.189 Sum_probs=88.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
...|+++|+|..|+.+|..|...+.+|+++++.+.+- +. .-...+...
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-------------------------------~~-lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-------------------------------PR-LFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-------------------------------hh-hhhHHHHHH
Confidence 5679999999999999999999999999999987320 00 234566777
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCCcc
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPEIE 181 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~~~ 181 (433)
+..+.++.++++..++.+.+++...+.+...|.+.++ .++.+|.||+.+| .+|+.+.+.
T Consensus 261 ~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg--------~~l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG--------KTLEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC--------CEeccCeEEEeec--ccccccccc
Confidence 7888888999999999999998877656677888887 8999999999999 777776544
No 310
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.98 E-value=9.6e-06 Score=81.75 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=37.1
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ 73 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~ 73 (433)
+||+|||+|++|+++|..|++.|++|+|+|+++.+||.-.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 6899999999999999999999999999999999888533
No 311
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=9.8e-06 Score=73.40 Aligned_cols=44 Identities=27% Similarity=0.287 Sum_probs=40.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccc
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKT 76 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~ 76 (433)
++|++|||+|.+|+.+|..|.++|.+|+|+|+++++||.-....
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~ 44 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEA 44 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccccc
Confidence 58999999999999999999999999999999999999765543
No 312
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.97 E-value=8.5e-06 Score=81.56 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=37.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHc------CCCEEEEecCCCCCCcccc
Q 013943 33 VPGPVIVGAGPSGLATAACLKER------GIPSILLERSNCIASLWQL 74 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~------g~~v~iie~~~~~gg~w~~ 74 (433)
|++|+|||||++||++|+.|.+. +.+|+|+|+++.+||....
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 57899999999999999999986 3799999999999996544
No 313
>PLN02568 polyamine oxidase
Probab=97.95 E-value=1.4e-05 Score=80.80 Aligned_cols=48 Identities=25% Similarity=0.323 Sum_probs=41.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcC-----CCEEEEecCCCCCCcccccccCc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERG-----IPSILLERSNCIASLWQLKTYDR 79 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g-----~~v~iie~~~~~gg~w~~~~~~~ 79 (433)
+.+||+|||||++|+++|..|.+.| ++|+|+|++..+||.+......+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g 56 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGG 56 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCC
Confidence 3478999999999999999999887 89999999999999766543333
No 314
>PRK07233 hypothetical protein; Provisional
Probab=97.94 E-value=9.6e-06 Score=80.40 Aligned_cols=40 Identities=33% Similarity=0.404 Sum_probs=36.9
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL 74 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~ 74 (433)
+|+|||||++||++|..|.+.|++|+|+|+++.+||....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceee
Confidence 5999999999999999999999999999999999996433
No 315
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.93 E-value=0.00012 Score=65.51 Aligned_cols=42 Identities=29% Similarity=0.287 Sum_probs=35.9
Q ss_pred CccCCCCeEEECCChHHHHHHHHHHHcC------CCEEEEecCCCCCC
Q 013943 29 RCICVPGPVIVGAGPSGLATAACLKERG------IPSILLERSNCIAS 70 (433)
Q Consensus 29 ~~~~~~dVvIIGaG~aGl~~A~~L~~~g------~~v~iie~~~~~gg 70 (433)
++.+.++|+|||||+.|+++|+.|.+++ +.|++||+..-.||
T Consensus 6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 3456699999999999999999999987 79999999875543
No 316
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.93 E-value=1.4e-05 Score=80.82 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=34.7
Q ss_pred eEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 013943 36 PVIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71 (433)
Q Consensus 36 VvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~ 71 (433)
|||||||++||+||..|++.|++|+|+|++..+||.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~ 36 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGR 36 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCc
Confidence 699999999999999999999999999999999985
No 317
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=1.1e-05 Score=78.35 Aligned_cols=38 Identities=32% Similarity=0.369 Sum_probs=36.2
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~ 71 (433)
++|+|+|||.|||+||+.|++.|++|+|+|.++.+||.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 47999999999999999999999999999999999984
No 318
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.91 E-value=4.6e-05 Score=69.56 Aligned_cols=191 Identities=20% Similarity=0.225 Sum_probs=101.8
Q ss_pred CCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHH-HHHHHHHHHHhhcc
Q 013943 202 FRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLV-DKLLLVVSWLMLGD 280 (433)
Q Consensus 202 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 280 (433)
+....|+|||+|++|+-+|..|++.|.+|.++.+.+. +-. ...+. . .+ ++.... .....++.
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~-~Gg-g~~~g-g-----~~---~~~~~v~~~~~~~l~------ 85 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS-FGG-GMWGG-G-----ML---FNKIVVQEEADEILD------ 85 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCC-ccccC-c-----cc---cccccchHHHHHHHH------
Confidence 3445899999999999999999999999999998762 100 00000 0 00 000000 01111111
Q ss_pred ccccCCCCCCC-CcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--CC----eEEEc-----------CCcE
Q 013943 281 TARFGLDRPLL-GPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK--RY----AVEFV-----------NGRC 340 (433)
Q Consensus 281 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~----~v~~~-----------~g~~ 340 (433)
..++..... ...+ ...+..+...+.+...+.+++++.+ +..+. ++ ++... +..+
T Consensus 86 --~~gv~~~~~~~g~~----~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~ 159 (257)
T PRK04176 86 --EFGIRYKEVEDGLY----VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLT 159 (257)
T ss_pred --HCCCCceeecCcce----eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEE
Confidence 122211110 0000 0112234444555556678888766 44332 22 22221 2246
Q ss_pred ecccEEEEccCCCCCCCCccccc------------cccccCCCCcCCCCCCCCCCCCceEEeeecccc----------cc
Q 013943 341 ENFDAIILATGYRSNVPSWLKES------------EMFSRKDGLPRRPFPNGWKGESGLYSVGFTKRG----------LL 398 (433)
Q Consensus 341 ~~~D~vi~atG~~~~~~~~~~~~------------~l~~~~~g~~~~~~~~~~~~~~~iya~Gd~~~~----------~~ 398 (433)
+.++.||.|||........+... .+..+.....+++ ....-.||+|++|-++.. ..
T Consensus 160 i~Ak~VI~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~--~t~~~~~g~~~~gm~~~~~~~~~rmg~~fg 237 (257)
T PRK04176 160 IEAKAVVDATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVE--NTGEVYPGLYVAGMAANAVHGLPRMGPIFG 237 (257)
T ss_pred EEcCEEEEEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHh--cCCeEcCCEEEeehhhhhhcCCCccCchhH
Confidence 89999999999766543222110 1111111111222 223346999999977642 22
Q ss_pred cchhhHHHHHHHHHhhhcc
Q 013943 399 GVAMDAKRIAQDIESCWKA 417 (433)
Q Consensus 399 ~a~~~g~~~a~~i~~~l~~ 417 (433)
.....|+.+|+.|..+|++
T Consensus 238 ~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 238 GMLLSGKKVAELILEKLKK 256 (257)
T ss_pred hHHHhHHHHHHHHHHHhhc
Confidence 5677999999999998875
No 319
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.87 E-value=9.4e-05 Score=71.56 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=66.7
Q ss_pred CCeEEECCChHHHHHHHHHHHc----C--CCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHH
Q 013943 34 PGPVIVGAGPSGLATAACLKER----G--IPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQ 107 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~----g--~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (433)
++|+|||+|++|+.+|..|.+. | .+|+++.. +.+. + ....
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~~l-------------------------------~--~~~~ 191 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-ASLL-------------------------------P--GFPA 191 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Cccc-------------------------------c--cCCH
Confidence 5899999999999999999853 4 47888832 2110 0 0124
Q ss_pred HHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 108 QFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 108 ~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
++...+.+.+++.+++++.++++++++.. .+.+.++ ..+.+|.||+|+|.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~v~~~~g--------~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPDG------ALILADG--------RTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcCC------eEEeCCC--------CEEecCEEEEccCC
Confidence 45667778888899999999999888532 2666665 68999999999993
No 320
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.86 E-value=0.00019 Score=65.52 Aligned_cols=38 Identities=29% Similarity=0.530 Sum_probs=34.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC--CCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSN--CIAS 70 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~--~~gg 70 (433)
.+||+|||+|.+|+.+|.+|+..|.+|+|+|++. .+||
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 5899999999999999999999999999999875 3555
No 321
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.83 E-value=1.9e-05 Score=77.61 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=41.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccccc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLK 75 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~ 75 (433)
..|||||||+|.+|+.+|..|.+.|.+|+++|+++..||.|...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 56999999999999999999999999999999999999988764
No 322
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.81 E-value=0.0002 Score=72.49 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=70.3
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||||+.|+.+|..|++.+.+|+++++.+.+. . ...+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~-----------------------------------~----~~~l 393 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK-----------------------------------A----DKVL 393 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-----------------------------------h----hHHH
Confidence 689999999999999999999999999998765220 0 1123
Q ss_pred HHHHHH-cCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 114 EAYAKR-FEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 114 ~~~~~~-~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
.+.+++ .++++++++.++++..+++ ....|.+.+++ .++...+.+|.|++|+| ..|+..
T Consensus 394 ~~~l~~~~gV~i~~~~~v~~i~~~~~-~v~~v~~~~~~---~~~~~~i~~D~vi~a~G--~~Pn~~ 453 (515)
T TIGR03140 394 QDKLKSLPNVDILTSAQTTEIVGDGD-KVTGIRYQDRN---SGEEKQLDLDGVFVQIG--LVPNTE 453 (515)
T ss_pred HHHHhcCCCCEEEECCeeEEEEcCCC-EEEEEEEEECC---CCcEEEEEcCEEEEEeC--CcCCch
Confidence 344444 5899999999999876532 22224444320 12236799999999999 666543
No 323
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.79 E-value=0.00014 Score=69.91 Aligned_cols=102 Identities=18% Similarity=0.024 Sum_probs=66.9
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIP-SILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
.+|+|||+|+.|+.+|..|.+.|.+ |+++++.... .. ... ..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~----~~-----------------------------~~~----~~ 215 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTIN----EA-----------------------------PAG----KY 215 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchh----hC-----------------------------CCC----HH
Confidence 5899999999999999999999987 9999876411 00 001 12
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCc------------CCCceeEEEEeCEEEEccCCCCCCc
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQ------------KCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~------------~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
..+.+++.++++++++.+++++..+ ..-.+...+.+. ...++...+.+|.||+|+| .+|.
T Consensus 216 ~~~~l~~~gi~i~~~~~v~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G--~~p~ 287 (352)
T PRK12770 216 EIERLIARGVEFLELVTPVRIIGEG--RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIG--EIPT 287 (352)
T ss_pred HHHHHHHcCCEEeeccCceeeecCC--cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcc--cCCC
Confidence 2334667799999999888887543 211232221100 0012346899999999999 5554
No 324
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.76 E-value=0.00019 Score=65.02 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=36.7
Q ss_pred CCCccCCCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCC
Q 013943 27 SPRCICVPGPVIVGAGPSGLATAACLKER--GIPSILLERSNCIA 69 (433)
Q Consensus 27 ~~~~~~~~dVvIIGaG~aGl~~A~~L~~~--g~~v~iie~~~~~g 69 (433)
++.+...||+||||||+.|++.|++|.-+ +.+|.++|++..++
T Consensus 42 ~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 42 ESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 35556679999999999999999998766 78999999987554
No 325
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.76 E-value=3.6e-05 Score=73.59 Aligned_cols=41 Identities=39% Similarity=0.512 Sum_probs=36.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCcccc
Q 013943 34 PGPVIVGAGPSGLATAACLKERGI-PSILLERSNCIASLWQL 74 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~-~v~iie~~~~~gg~w~~ 74 (433)
.+|+|||||.||++||.+|.+.|. +++|+|..+++||..+.
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 479999999999999999998875 99999999999986544
No 326
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.76 E-value=3.4e-05 Score=76.96 Aligned_cols=38 Identities=32% Similarity=0.465 Sum_probs=35.8
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW 72 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w 72 (433)
+|+|||||++|+++|..|.+.|++|+|+|+.+.+||..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCc
Confidence 58999999999999999999999999999999999854
No 327
>PLN02529 lysine-specific histone demethylase 1
Probab=97.73 E-value=4.7e-05 Score=79.00 Aligned_cols=47 Identities=32% Similarity=0.291 Sum_probs=41.0
Q ss_pred CCCccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc
Q 013943 27 SPRCICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ 73 (433)
Q Consensus 27 ~~~~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~ 73 (433)
.++....++|+|||||++|+++|..|.+.|++|+|+|+++.+||...
T Consensus 154 ~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 154 IPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CCcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 34445678999999999999999999999999999999998888543
No 328
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00018 Score=68.61 Aligned_cols=133 Identities=14% Similarity=0.155 Sum_probs=74.4
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC-CCCCcccccccCceeee-------cCC----ceeecC------
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSN-CIASLWQLKTYDRLRLH-------LPK----QFCELP------ 92 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~-~~gg~w~~~~~~~~~~~-------~~~----~~~~~~------ 92 (433)
...|||||||||.||+.+|...++.|.+.+++-.+- .+|-+-....+-++... --. ..++..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~ 105 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKV 105 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHH
Confidence 568999999999999999999999999888887753 22222111111111100 000 000000
Q ss_pred --CCCCCCCCC--CCCCHHHHHHHHHHHHHHc-CCcceecceEEEEEEeCCCC----eEEEEEeecCcCCCceeEEEEeC
Q 013943 93 --LMGFPSEFP--TYPSKQQFVDYLEAYAKRF-EIRPRFNETVSQAEYDATIR----FWRVKTTVGGQKCGVEEMEYRCR 163 (433)
Q Consensus 93 --~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~l~~~~~~~v~~v~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~d 163 (433)
-..-|..|. ....+..|..++++.+... +++++-+ .|.++-...... .--|.+.+| ..+.++
T Consensus 106 LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dg--------t~v~a~ 176 (679)
T KOG2311|consen 106 LNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDG--------TVVYAE 176 (679)
T ss_pred hhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecC--------cEeccc
Confidence 001111111 1246677777777665443 4444444 455554333221 223556666 789999
Q ss_pred EEEEccCCC
Q 013943 164 WLVVATGEN 172 (433)
Q Consensus 164 ~viiAtG~~ 172 (433)
.||+.||-+
T Consensus 177 ~VilTTGTF 185 (679)
T KOG2311|consen 177 SVILTTGTF 185 (679)
T ss_pred eEEEeeccc
Confidence 999999954
No 329
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.71 E-value=0.00015 Score=66.04 Aligned_cols=191 Identities=16% Similarity=0.217 Sum_probs=100.3
Q ss_pred CCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccc
Q 013943 202 FRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDT 281 (433)
Q Consensus 202 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 281 (433)
+..-.|+|||+|++|+-+|..|++.|.+|.++.|++. + .....+.. ..+... .+..... ..+.
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~-~-Ggg~~~gg-~~~~~~---~~~~~~~----~~l~------- 81 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA-F-GGGSWGGG-MLFSKI---VVEKPAH----EILD------- 81 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-C-CccccCCC-cceecc---cccchHH----HHHH-------
Confidence 3445799999999999999999999999999998872 1 00000000 000000 0010000 0111
Q ss_pred cccCCCCCCCCc-ccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--CC-----eEEEc-----------CCcE
Q 013943 282 ARFGLDRPLLGP-LQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK--RY-----AVEFV-----------NGRC 340 (433)
Q Consensus 282 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~-----~v~~~-----------~g~~ 340 (433)
..++.....+. ... ..++.+...+.+...+.+++++.+ +..+. ++ ++.+. +..+
T Consensus 82 -~~gi~~~~~~~g~~~----~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~ 156 (254)
T TIGR00292 82 -EFGIRYEDEGDGYVV----ADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT 156 (254)
T ss_pred -HCCCCeeeccCceEE----eeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE
Confidence 11221111000 000 011233344444555667888766 44432 22 34442 1236
Q ss_pred ecccEEEEccCCCCCCCCccccc-cccccCC---C---C-------cCCCCCCCCCCCCceEEeeecccc----------
Q 013943 341 ENFDAIILATGYRSNVPSWLKES-EMFSRKD---G---L-------PRRPFPNGWKGESGLYSVGFTKRG---------- 396 (433)
Q Consensus 341 ~~~D~vi~atG~~~~~~~~~~~~-~l~~~~~---g---~-------~~~~~~~~~~~~~~iya~Gd~~~~---------- 396 (433)
+++++||.|||.......++... ++..+.. | . .+++ .+..-.||+|++|-++..
T Consensus 157 i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~--~t~~~~~g~~~~gm~~~~~~~~~rmgp~ 234 (254)
T TIGR00292 157 QRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHE--NTREVVPNLYVAGMAVAAVHGLPRMGPI 234 (254)
T ss_pred EEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHh--ccCcccCCEEEechhhhhhcCCCCcCch
Confidence 89999999999877653333332 2211110 0 0 0111 223346999999977642
Q ss_pred cccchhhHHHHHHHHHhhhc
Q 013943 397 LLGVAMDAKRIAQDIESCWK 416 (433)
Q Consensus 397 ~~~a~~~g~~~a~~i~~~l~ 416 (433)
.......|+.+|+.|..+|+
T Consensus 235 fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 235 FGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred HHHHHHhhHHHHHHHHHHhC
Confidence 22457789999999988763
No 330
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.68 E-value=5.3e-05 Score=73.72 Aligned_cols=138 Identities=22% Similarity=0.291 Sum_probs=66.7
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceeccccc---CCcchh---------------hhHHHHhhcchHHHH
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEML---GKSTFG---------------LSMWLLKWLPMRLVD 267 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~---~~~~~~---------------~~~~~~~~l~~~~~~ 267 (433)
+|+|||+|++|+-+|..+++.|.+|.++.|++ .+-.+... |.=++. ...++...+.....+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~-~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNK-RVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS-SS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCc-ccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 58999999999999999999999999999997 22111000 000000 111111112122222
Q ss_pred HHHHHHHHHhhccccccCCCCCC--CCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEe--CCe---EEEcCC
Q 013943 268 KLLLVVSWLMLGDTARFGLDRPL--LGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK--RYA---VEFVNG 338 (433)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~---v~~~~g 338 (433)
.+..++.. .++.... .+.++.. ..+...+.+.+.+.+++.+|+++.+ |..+. +++ |.++++
T Consensus 81 d~~~ff~~--------~Gv~~~~~~~gr~fP~--s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~ 150 (409)
T PF03486_consen 81 DLIAFFEE--------LGVPTKIEEDGRVFPK--SDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG 150 (409)
T ss_dssp HHHHHHHH--------TT--EEE-STTEEEET--T--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT
T ss_pred HHHHHHHh--------cCCeEEEcCCCEECCC--CCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc
Confidence 22333322 2222110 1111111 1122344455566677789999977 77774 444 556678
Q ss_pred cEecccEEEEccCCCC
Q 013943 339 RCENFDAIILATGYRS 354 (433)
Q Consensus 339 ~~~~~D~vi~atG~~~ 354 (433)
.++.+|.||+|||-..
T Consensus 151 ~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 151 GEYEADAVILATGGKS 166 (409)
T ss_dssp EEEEESEEEE----SS
T ss_pred ccccCCEEEEecCCCC
Confidence 8899999999999765
No 331
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.68 E-value=5e-05 Score=73.25 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=33.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCI 68 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~ 68 (433)
+.||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 579999999999999999999999999999986543
No 332
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.67 E-value=0.00029 Score=70.03 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||||..|+-+|..|.+.|.+|+++++.... .. +.... .
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~------------------------------~~---~~~~~----~ 315 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRE------------------------------DM---TARVE----E 315 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcc------------------------------cC---CCCHH----H
Confidence 68999999999999999999999999999887521 00 11111 1
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEe---------ecCcC---CCceeEEEEeCEEEEccCCCCCCcc
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTT---------VGGQK---CGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~---------~g~~~---~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
.+.+.+.|+++++++.++++..+++...-.|++. +|... ..+....+.+|.||+|+| ..|..
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG--~~p~~ 389 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG--NGSNP 389 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCC--CCCCc
Confidence 2335567999999999888865432111123222 11000 012245799999999999 55543
No 333
>PLN02487 zeta-carotene desaturase
Probab=97.61 E-value=8.9e-05 Score=75.16 Aligned_cols=42 Identities=26% Similarity=0.262 Sum_probs=38.2
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ 73 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~ 73 (433)
.+++|+|||||++|+++|..|.+.|++|+|+|+.+.+||.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 456999999999999999999999999999999999988543
No 334
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.59 E-value=0.00082 Score=63.27 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=75.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc----CCCEEEEecC--CCCCCcccccccCcee-eecCCceeecCC-----------
Q 013943 32 CVPGPVIVGAGPSGLATAACLKER----GIPSILLERS--NCIASLWQLKTYDRLR-LHLPKQFCELPL----------- 93 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~----g~~v~iie~~--~~~gg~w~~~~~~~~~-~~~~~~~~~~~~----------- 93 (433)
..|||+|+||||.|.++|..|... .++++++|.. ++++..-....|..-. ..++.++..|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R 114 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR 114 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence 469999999999999999999865 3699999998 5454322212222211 111111111100
Q ss_pred -CCC---------------------CCCCCCCCCHHHHHHHHHH--HHH-HcCCcceecceEEEEEEe------CCCCeE
Q 013943 94 -MGF---------------------PSEFPTYPSKQQFVDYLEA--YAK-RFEIRPRFNETVSQAEYD------ATIRFW 142 (433)
Q Consensus 94 -~~~---------------------~~~~~~~~~~~~~~~~l~~--~~~-~~~l~~~~~~~v~~v~~~------~~~~~~ 142 (433)
.++ ..+.....-.+.+...+.. +.. ...+++....++..+... +...-+
T Consensus 115 ~~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~ 194 (481)
T KOG3855|consen 115 YQKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWF 194 (481)
T ss_pred cccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceE
Confidence 000 0011112233444444442 222 235667777776666542 222345
Q ss_pred EEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 143 RVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 143 ~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
.+++.+| ..+..|.+|-|.|..+
T Consensus 195 ~i~l~dg--------~~~~~~LLigAdg~Ns 217 (481)
T KOG3855|consen 195 HITLTDG--------INFATDLLIGADGFNS 217 (481)
T ss_pred EEEeccC--------ceeeeceeeccccccc
Confidence 6777776 7999999999999654
No 335
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.56 E-value=9.3e-05 Score=74.03 Aligned_cols=38 Identities=34% Similarity=0.374 Sum_probs=35.6
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcc
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLW 72 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w 72 (433)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~ 38 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKV 38 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCcee
Confidence 58999999999999999999999999999999999853
No 336
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.56 E-value=0.00012 Score=76.59 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=39.9
Q ss_pred ccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccc
Q 013943 30 CICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQL 74 (433)
Q Consensus 30 ~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~ 74 (433)
.....+|+|||||++|+++|..|.+.|++|+|+|++..+||....
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccc
Confidence 345689999999999999999999999999999999988886433
No 337
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.55 E-value=0.00058 Score=69.28 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=69.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
++|+|||||..|+.+|..|...+.+|+++++.+.+. . ..++
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-----------------------------------~----~~~l 392 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-----------------------------------A----DQVL 392 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-----------------------------------c----cHHH
Confidence 689999999999999999999999999998876220 0 0123
Q ss_pred HHHHHH-cCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 114 EAYAKR-FEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 114 ~~~~~~-~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
.+.+.+ .++++++++.++++..+++ ..-.+++.+. ..++..++.+|.|++|+| ..|+.
T Consensus 393 ~~~l~~~~gI~i~~~~~v~~i~~~~g-~v~~v~~~~~---~~g~~~~i~~D~v~~~~G--~~p~~ 451 (517)
T PRK15317 393 QDKLRSLPNVTIITNAQTTEVTGDGD-KVTGLTYKDR---TTGEEHHLELEGVFVQIG--LVPNT 451 (517)
T ss_pred HHHHhcCCCcEEEECcEEEEEEcCCC-cEEEEEEEEC---CCCcEEEEEcCEEEEeEC--CccCc
Confidence 333333 5899999999999986532 2222444432 022346899999999999 55543
No 338
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.55 E-value=0.00054 Score=65.27 Aligned_cols=131 Identities=19% Similarity=0.071 Sum_probs=66.9
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCC--CEEEEecCCCCCCcccccccCce--eeecCCceeecCCCCCCC--------C
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGI--PSILLERSNCIASLWQLKTYDRL--RLHLPKQFCELPLMGFPS--------E 99 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~--~v~iie~~~~~gg~w~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~ 99 (433)
..++|+|||||.++..++..|.+.+. +|+++-++..+--.- ...+ ....|...-.|...+... .
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d----~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~ 264 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMD----DSPFVNEIFSPEYVDYFYSLPDEERRELLREQR 264 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB--------CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCc----cccchhhhcCchhhhhhhcCCHHHHHHHHHHhH
Confidence 56899999999999999999999875 788998876321100 0000 111111111111111000 0
Q ss_pred --CCCCCCHHHH---HHHHH--HHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccC
Q 013943 100 --FPTYPSKQQF---VDYLE--AYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATG 170 (433)
Q Consensus 100 --~~~~~~~~~~---~~~l~--~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG 170 (433)
..+-++.+.+ .+.+. ++..+..+.++.+++|++++..++ +.|++++.+. ..++...+.+|.||+|||
T Consensus 265 ~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~l~~~~~---~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 265 HTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVRLTLRHR---QTGEEETLEVDAVILATG 338 (341)
T ss_dssp GGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEET---TT--EEEEEESEEEE---
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEEEEEEEC---CCCCeEEEecCEEEEcCC
Confidence 0011222222 22111 122233466788999999999884 4788888763 134468899999999999
No 339
>PLN02661 Putative thiazole synthesis
Probab=97.55 E-value=0.0006 Score=64.24 Aligned_cols=38 Identities=16% Similarity=0.476 Sum_probs=32.5
Q ss_pred CCCCCCeEEEECCCCcHHHHHHHHhcc-CCCcEEEEecC
Q 013943 200 EDFRGKRVLVVGCGNSGMEVCLDLCNH-DAMPSLVVRDT 237 (433)
Q Consensus 200 ~~~~~~~v~VvG~G~~a~e~a~~l~~~-g~~Vtl~~r~~ 237 (433)
.+...-.|+|||+|..|+-+|..|++. +.+|+++.+..
T Consensus 88 ~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 88 ITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 344556899999999999999999976 78999999876
No 340
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00011 Score=70.14 Aligned_cols=41 Identities=32% Similarity=0.404 Sum_probs=38.1
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~ 71 (433)
..-.||||||+|.+||.+|++|.+.|++|+|+|.++.+||.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 45689999999999999999999999999999999998874
No 341
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.54 E-value=0.0001 Score=73.97 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=37.6
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ 73 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~ 73 (433)
|||+|||+||+|+.+|..|.+.|++|++||++...|+.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 6999999999999999999999999999999998888773
No 342
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.53 E-value=0.00021 Score=76.85 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=33.4
Q ss_pred CCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 202 FRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 202 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..+++|+|||+|+.|+.+|..|++.|.+||++.+.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 358999999999999999999999999999998876
No 343
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.53 E-value=6.2e-05 Score=71.88 Aligned_cols=137 Identities=19% Similarity=0.187 Sum_probs=67.4
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecc-cccCCcchhhhHHHHhhcchHHHHHHHHH----HHHHhhcc
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQ-EMLGKSTFGLSMWLLKWLPMRLVDKLLLV----VSWLMLGD 280 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~ 280 (433)
.|+|||||..|+|.|..+++.|.+|.|+......+.-. ....... ..+....+-+.. +.......
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg----------~~kg~L~~Eidalgg~m~~~aD~~ 70 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGG----------IAKGHLVREIDALGGLMGRAADET 70 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEES----------TTHHHHHHHHHHTT-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhcc----------ccccchhHHHhhhhhHHHHHHhHh
Confidence 48999999999999999999999999994333122100 0000000 011111111111 11111101
Q ss_pred ccccCCCCCCCCc-ccccccCCCccccCchhhhhhhc-CCeEEecC-ceEEeC-----CeEEEcCCcEecccEEEEccCC
Q 013943 281 TARFGLDRPLLGP-LQLKNLSGKTPVLDAGTLAKIKS-GHIRVFPG-IKRLKR-----YAVEFVNGRCENFDAIILATGY 352 (433)
Q Consensus 281 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-v~~~~~-----~~v~~~~g~~~~~D~vi~atG~ 352 (433)
...+.......++ ..-......+..++..+.+.+.+ .+++++.. |..+.. .+|.+.+|+++.+|.||+|||.
T Consensus 71 ~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 71 GIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp EEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred hhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 1111110000000 00000011122344455556665 78998876 777643 2588899999999999999999
No 344
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.47 E-value=9.2e-05 Score=64.96 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=29.2
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+|+|||+|+.|+.+|..|++.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999996555
No 345
>PLN02612 phytoene desaturase
Probab=97.46 E-value=0.00019 Score=73.32 Aligned_cols=44 Identities=39% Similarity=0.491 Sum_probs=38.8
Q ss_pred CCccCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCc
Q 013943 28 PRCICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASL 71 (433)
Q Consensus 28 ~~~~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~ 71 (433)
+.+..-++|+|||||++|+++|..|.+.|++++++|++..+||.
T Consensus 88 ~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 88 PRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 34445589999999999999999999999999999999888874
No 346
>PRK06847 hypothetical protein; Provisional
Probab=97.46 E-value=0.00034 Score=67.91 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=31.9
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.++|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999887
No 347
>PRK12831 putative oxidoreductase; Provisional
Probab=97.46 E-value=0.0014 Score=65.34 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=67.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
-++|+|||||..|+-+|..|.+.|.+|+++++.... .++. ...++
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~------------------------------~m~a--~~~e~--- 325 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEE------------------------------ELPA--RVEEV--- 325 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcc------------------------------cCCC--CHHHH---
Confidence 379999999999999999999999999999876411 0110 11222
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEe---------ecCc---CCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTT---------VGGQ---KCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~---------~g~~---~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
+.+.+.|+++++++.++.+..+++...-.|.+. +|.. ...++...+.+|.||+|+| ..|..
T Consensus 326 --~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG--~~p~~ 398 (464)
T PRK12831 326 --HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLG--TSPNP 398 (464)
T ss_pred --HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCC--CCCCh
Confidence 224456999999988888865432111112211 1100 0022345799999999999 54543
No 348
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.45 E-value=8.2e-05 Score=69.73 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=29.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCC
Q 013943 34 PGPVIVGAGPSGLATAACLKERG-IPSILLERSNC 67 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g-~~v~iie~~~~ 67 (433)
||+||||+|++|..+|.+|.+.+ .+|+|+|++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 79999999999999999999987 69999999873
No 349
>PLN02463 lycopene beta cyclase
Probab=97.45 E-value=0.00034 Score=69.12 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=72.2
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhcccccc
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARF 284 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (433)
-.|+|||+|++|.-+|..|++.|.+|.++.+.+....|. ....|...+-.-.+.+.+ ...........
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~--------~~g~w~~~l~~lgl~~~l----~~~w~~~~v~~ 96 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPN--------NYGVWVDEFEALGLLDCL----DTTWPGAVVYI 96 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhcc--------ccchHHHHHHHCCcHHHH----HhhCCCcEEEE
Confidence 379999999999999999999999999998876322221 111111111000000100 00000000000
Q ss_pred CCCCCCCCccccc-cc-CCCccccCchhhhhhhcCCeEEecC-ceEEeCC----eEEEcCCcEecccEEEEccCCCCC
Q 013943 285 GLDRPLLGPLQLK-NL-SGKTPVLDAGTLAKIKSGHIRVFPG-IKRLKRY----AVEFVNGRCENFDAIILATGYRSN 355 (433)
Q Consensus 285 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~----~v~~~~g~~~~~D~vi~atG~~~~ 355 (433)
+ ........ .. ...+..+...+.+.+.+.+++++.. |.+++.+ .|.+++|+++++|+||.|+|..+.
T Consensus 97 ~----~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 97 D----DGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred e----CCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0 00000000 00 0112233444555555667887654 6665432 377788889999999999998775
No 350
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00062 Score=67.73 Aligned_cols=61 Identities=18% Similarity=0.057 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCC
Q 013943 103 YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENA 173 (433)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~ 173 (433)
......+...+...++..|..+..++.|+++....+ +.+-|.+.- ..+++.++|-|+|.|.
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-~~~gVeT~~---------G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALVIENCPVTGLHVETD-KFGGVETPH---------GSIETECVVNAAGVWA 243 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-CccceeccC---------cceecceEEechhHHH
Confidence 346667778888889999999999999999987665 455677765 4899999999999764
No 351
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00019 Score=65.39 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=32.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
.+||+|||||.||++|+.+|+++|.++.|+.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 5899999999999999999999999999998875
No 352
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.40 E-value=0.00037 Score=74.35 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 202 FRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 202 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 457899999999999999999999999999998776
No 353
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.40 E-value=0.0016 Score=65.13 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=68.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGI-PSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
-.+|+|||+|..|+.+|..|.+.|. +|+++++.... .+ +....
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~------------------------------~~---~~~~~--- 316 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGRE------------------------------EM---PASEE--- 316 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cC---CCCHH---
Confidence 4689999999999999999999998 89999876411 00 11111
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCC-CeEEEEEe-------ecCc--CCCceeEEEEeCEEEEccCCCCCCc
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATI-RFWRVKTT-------VGGQ--KCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~-~~~~v~~~-------~g~~--~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
..+.+++.++++++++.+..+..+++. ..+++... +|.. ...+....+.+|.||+|+| ..|.
T Consensus 317 -~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G--~~p~ 388 (457)
T PRK11749 317 -EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIG--QTPN 388 (457)
T ss_pred -HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECcc--CCCC
Confidence 133456779999999999988765421 11222211 0100 0012346899999999999 5554
No 354
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.38 E-value=0.00053 Score=68.97 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=31.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
.++|+|||+|.+|+.+|..|.++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999764
No 355
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.36 E-value=0.006 Score=59.56 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcC----CCEEEEecCCCCCCcc
Q 013943 34 PGPVIVGAGPSGLATAACLKERG----IPSILLERSNCIASLW 72 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g----~~v~iie~~~~~gg~w 72 (433)
++.=|||+|+|+|++|..|.+.+ -+|+|+|+.+..||..
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 45679999999999999999974 5999999998777643
No 356
>PLN02976 amine oxidase
Probab=97.34 E-value=0.00027 Score=76.88 Aligned_cols=44 Identities=30% Similarity=0.421 Sum_probs=40.4
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccccc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLK 75 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~ 75 (433)
..++|+|||||++|+++|..|.+.|++|+|+|++..+||.|...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 44899999999999999999999999999999999999987664
No 357
>PLN03000 amine oxidase
Probab=97.34 E-value=0.00032 Score=73.48 Aligned_cols=44 Identities=36% Similarity=0.323 Sum_probs=40.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccccc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLK 75 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~ 75 (433)
..++|+|||||++|+.+|..|.+.|++|+|+|+...+||.+...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~ 226 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK 226 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence 46899999999999999999999999999999999999866543
No 358
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.32 E-value=0.0016 Score=66.60 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=64.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
-.+|+|||||+.|+.+|..|.+.|.+|+++++.+.+. ....+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~-----------------------------------~~~~~--- 184 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT-----------------------------------CAKLI--- 184 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccc-----------------------------------cCHHH---
Confidence 3689999999999999999999999999999876220 00111
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEE--EEeCE----EEEccCCCCCCccC
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEME--YRCRW----LVVATGENAEAVVP 178 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~--~~~d~----viiAtG~~~~p~~p 178 (433)
..+.....++++++++.|+++..++ ....+...+. .+++... +.+|. ||+|+| .+|+..
T Consensus 185 ~~~~~~~~gV~i~~~~~V~~i~~~~--~v~~v~~~~~---~~G~~~~~~~~~D~~~~~Vi~a~G--~~Pn~~ 249 (555)
T TIGR03143 185 AEKVKNHPKIEVKFNTELKEATGDD--GLRYAKFVNN---VTGEITEYKAPKDAGTFGVFVFVG--YAPSSE 249 (555)
T ss_pred HHHHHhCCCcEEEeCCEEEEEEcCC--cEEEEEEEEC---CCCCEEEEeccccccceEEEEEeC--CCCChh
Confidence 1222334589999999999987533 2111222110 0111223 33666 999999 555543
No 359
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.30 E-value=0.00066 Score=66.40 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=31.6
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
...|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 3479999999999999999999999999999986
No 360
>PRK06834 hypothetical protein; Provisional
Probab=97.30 E-value=0.00092 Score=67.16 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=31.4
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 479999999999999999999999999999887
No 361
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.29 E-value=0.0025 Score=63.82 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=66.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGI-PSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
-++|+|||+|..|+-+|..+.+.|. +|++++........+ +.. ..++.++. .
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~------------------~~~----~~~~~~~~-----~ 333 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRR------------------NKN----NPWPYWPM-----K 333 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccc------------------ccc----cCCcccch-----H
Confidence 3689999999999999999999886 788776554221100 000 00011111 1
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEe-----ecC-cCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTT-----VGG-QKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~-----~g~-~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
...+.+.+.++++++++.++++...++ ..-.|... ++. ....++.+.+.+|.||+|+| ..|.
T Consensus 334 ~~~~~~~~~GV~i~~~~~~~~i~~~~g-~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G--~~p~ 401 (471)
T PRK12810 334 LEVSNAHEEGVEREFNVQTKEFEGENG-KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG--FTGP 401 (471)
T ss_pred HHHHHHHHcCCeEEeccCceEEEccCC-EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC--cCCC
Confidence 123445667999999999988864321 11112221 110 00123457899999999999 5554
No 362
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.00031 Score=60.52 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=33.4
Q ss_pred CCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 201 DFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 201 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
++....|+|||+|++|+-+|..|++.|-+|.++.|+-
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 4556689999999999999999999999999998876
No 363
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.28 E-value=0.00056 Score=68.04 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCCcHHHHHHHHhc--cCCCcEEEEecC
Q 013943 202 FRGKRVLVVGCGNSGMEVCLDLCN--HDAMPSLVVRDT 237 (433)
Q Consensus 202 ~~~~~v~VvG~G~~a~e~a~~l~~--~g~~Vtl~~r~~ 237 (433)
..+++|+|||+|+.|+.+|..|++ .|.+|+++.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 346799999999999999999986 689999999888
No 364
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.26 E-value=0.00027 Score=64.91 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=36.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCccc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQ 73 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~ 73 (433)
.+.+|+|||+|++|++||..|.++ ++|++||.+..+||.-+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 567899999999999999999765 89999999999998643
No 365
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.23 E-value=0.0035 Score=66.64 Aligned_cols=106 Identities=16% Similarity=0.104 Sum_probs=67.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCC-EEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIP-SILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~-v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
-++|+|||||..|+-+|..+.+.|.+ |+++++.... .++. ...++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~------------------------------~~~~--~~~e~-- 615 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE------------------------------EMPA--RLEEV-- 615 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHH--
Confidence 37899999999999999999999987 9999876521 0110 11222
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEe---------ecCc---CCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTT---------VGGQ---KCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~---------~g~~---~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
+.+.+.++++++++.+..+..+++...-.|.+. +|.. ...++...+.+|.||+|+| ..|..
T Consensus 616 ---~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G--~~p~~ 688 (752)
T PRK12778 616 ---KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVG--VSPNP 688 (752)
T ss_pred ---HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcC--CCCCc
Confidence 234566899988888888765433111112221 1100 0013346799999999999 44443
No 366
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.18 E-value=0.00074 Score=65.61 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=35.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
..+||+|||||..|.-||.-.+.+|+++.++|+++-..|
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 349999999999999999999999999999999974444
No 367
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.15 E-value=0.0005 Score=65.01 Aligned_cols=42 Identities=29% Similarity=0.275 Sum_probs=36.4
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCC--EEEEecCCCCCCcccc
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIP--SILLERSNCIASLWQL 74 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~--v~iie~~~~~gg~w~~ 74 (433)
-.+|+|+|||++||++|+.|++.+.+ ++++|+.+..||..+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 36799999999999999999999765 5669999999996554
No 368
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.13 E-value=0.0041 Score=57.18 Aligned_cols=34 Identities=44% Similarity=0.646 Sum_probs=30.6
Q ss_pred CCCeEEECCChHHHHHHHHHHHc----CCCEEEEecCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKER----GIPSILLERSN 66 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~----g~~v~iie~~~ 66 (433)
..||+|||||-.|.+.|.-|.++ |++|+++|++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 47999999999999999998764 68999999986
No 369
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.12 E-value=0.00086 Score=71.92 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=32.4
Q ss_pred CCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 203 RGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 203 ~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.+++|+|||||+.|+.+|..|++.|.+|+++.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 46799999999999999999999999999998776
No 370
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.10 E-value=0.00029 Score=61.91 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=24.4
Q ss_pred EEECCCCcHHHHHHHHhccCCC-cEEEEecC
Q 013943 208 LVVGCGNSGMEVCLDLCNHDAM-PSLVVRDT 237 (433)
Q Consensus 208 ~VvG~G~~a~e~a~~l~~~g~~-Vtl~~r~~ 237 (433)
+|||+|++|+-+|..|.+.|.+ ++++.|++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 6999999999999999999987 99999885
No 371
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.09 E-value=0.0031 Score=68.86 Aligned_cols=95 Identities=19% Similarity=0.104 Sum_probs=67.8
Q ss_pred CCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGI-PSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
++|+|||+|+.|+.+|..|.+.|. .++|+|..+.+ ...
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~~ 356 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SPE 356 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hHH
Confidence 689999999999999999999996 57888876411 112
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
+.+.+++.+++++.++.|+.+..++....+++...+ ++..++.+|.|+++.| ..|+.
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~------g~~~~i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNG------GAGQRLEADALAVSGG--WTPVV 413 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecC------CceEEEECCEEEEcCC--cCchh
Confidence 344567789999999999988754321222332111 1136899999999999 66654
No 372
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.08 E-value=0.001 Score=64.92 Aligned_cols=145 Identities=21% Similarity=0.233 Sum_probs=75.7
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHH-HHHHHHHH----HHhhc
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLV-DKLLLVVS----WLMLG 279 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~----~~~~~ 279 (433)
..|+|||+|++|+-+|..|++.|.+|+++.+.+....+.. ....+.......|..-.. +++...-. .....
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~----r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG----RGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc----eeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 4799999999999999999999999999999832222211 111222222222221111 11111000 00000
Q ss_pred cccc--cCCCCCCCCcccccccCCCccccCchhhhhhh-cCCeEEecC--ceEEeCCe----EEEc-CCcEecccEEEEc
Q 013943 280 DTAR--FGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIK-SGHIRVFPG--IKRLKRYA----VEFV-NGRCENFDAIILA 349 (433)
Q Consensus 280 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--v~~~~~~~----v~~~-~g~~~~~D~vi~a 349 (433)
+... ..+....... ...........+...+.+.+. .++|+++.+ |+.++.++ +++. +|+++.+|+||-|
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgA 157 (387)
T COG0654 79 DGGRRLLIFDAAELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGA 157 (387)
T ss_pred cCCceeEEecccccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEEC
Confidence 0000 0000000000 000000112244445555554 355898886 77766442 6777 9999999999999
Q ss_pred cCCCC
Q 013943 350 TGYRS 354 (433)
Q Consensus 350 tG~~~ 354 (433)
-|..+
T Consensus 158 DG~~S 162 (387)
T COG0654 158 DGANS 162 (387)
T ss_pred CCCch
Confidence 99655
No 373
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.07 E-value=0.0015 Score=69.06 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=33.4
Q ss_pred CCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 202 FRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 202 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..+++|+|||+|+.|+.+|..|++.|.+||++.+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468999999999999999999999999999998764
No 374
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.06 E-value=0.00039 Score=59.31 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=73.7
Q ss_pred CCCeEEECCChHHHHHHHHHHHc--CCCEEEEecCCCCC-Cccccc-ccCceeeecCCceee-cCCCCCCCCCCCCC---
Q 013943 33 VPGPVIVGAGPSGLATAACLKER--GIPSILLERSNCIA-SLWQLK-TYDRLRLHLPKQFCE-LPLMGFPSEFPTYP--- 104 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~--g~~v~iie~~~~~g-g~w~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--- 104 (433)
..||+|||+|-+|+++|+.+.++ .++|.|||..-.+| |.|--. .+..+.+..|.+++. -...+|.+.- .|.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYedeg-dYVVVK 154 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYEDEG-DYVVVK 154 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCcccCC-CEEEEe
Confidence 36999999999999999999866 46999999987655 466553 344455555555432 1233443321 111
Q ss_pred CHHHHHHH-HHHHHHHcCCcceecceEEEEEEeC-C---------CCeEEEEEee-cCcCCCceeEEEEeCEEEEccCC
Q 013943 105 SKQQFVDY-LEAYAKRFEIRPRFNETVSQAEYDA-T---------IRFWRVKTTV-GGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 105 ~~~~~~~~-l~~~~~~~~l~~~~~~~v~~v~~~~-~---------~~~~~v~~~~-g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
+..-|..- +.+.+..-++.+..-+-|+++-..+ + ...|++.+.+ ++.. -.....+.+..|+-+||+
T Consensus 155 HAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQs-CMDPNviea~~vvS~tGH 232 (328)
T KOG2960|consen 155 HAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQS-CMDPNVIEAAVVVSTTGH 232 (328)
T ss_pred eHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccc-cCCCCeeeEEEEEEccCC
Confidence 23333222 2222222333333333333332211 1 0135555543 2111 122457888888888885
No 375
>PRK09126 hypothetical protein; Provisional
Probab=97.05 E-value=0.0021 Score=62.79 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=31.2
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
-.|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999987
No 376
>PRK02106 choline dehydrogenase; Validated
Probab=97.05 E-value=0.00069 Score=69.46 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=32.7
Q ss_pred CCCCeEEECCChHHHHHHHHHHH-cCCCEEEEecCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKE-RGIPSILLERSN 66 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~-~g~~v~iie~~~ 66 (433)
..||+||||+|.+|+.+|.+|++ .|++|+|+|++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45899999999999999999999 799999999995
No 377
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.03 E-value=0.016 Score=60.41 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=66.1
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGI-PSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
-++|+|||+|..|+.+|..+.+.|. +|+++.+.... ..+. ...++.+
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~------------------------------~mpa--~~~ei~~ 370 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTRE------------------------------EMPA--NRAEIEE 370 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcc------------------------------cCCC--CHHHHHH
Confidence 3789999999999999999999987 69999876411 0111 1223322
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEE-EEEeec------Cc---CCCceeEEEEeCEEEEccCCCCCCc
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWR-VKTTVG------GQ---KCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~-v~~~~g------~~---~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
. .+.++++++++.+.++...++...+. +....+ .. ...++...+.+|.||+|+| ..|.
T Consensus 371 a-----~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG--~~p~ 438 (652)
T PRK12814 371 A-----LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIG--QQVD 438 (652)
T ss_pred H-----HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCC--CcCC
Confidence 2 34589999998888887644311111 111111 00 0023345799999999999 4444
No 378
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.03 E-value=0.0088 Score=62.53 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=66.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGI-PSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
++|+|||+|..|+-+|..+.+.|. +|+++.+.+... + +.....
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~------------------------------~---~~~~~e--- 512 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEAN------------------------------M---PGSKKE--- 512 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCC------------------------------C---CCCHHH---
Confidence 689999999999999999999986 699887764210 0 111111
Q ss_pred HHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEe---------ecCc---CCCceeEEEEeCEEEEccCCCCCCc
Q 013943 113 LEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTT---------VGGQ---KCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 113 l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~---------~g~~---~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
.+.+.+.|+++++++.++++..+++...-.|.+. +|.. ...++...+.+|.||+|+| ..|.
T Consensus 513 -~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG--~~p~ 585 (654)
T PRK12769 513 -VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFG--FNPH 585 (654)
T ss_pred -HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECcc--CCCC
Confidence 2345667999999988888865433222112221 1100 0023456899999999999 4443
No 379
>PRK05868 hypothetical protein; Validated
Probab=97.02 E-value=0.0025 Score=61.87 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=31.7
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecCc
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTV 238 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~ 238 (433)
++|+|||+|..|+-+|..|++.|.+|+++.+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4799999999999999999999999999999873
No 380
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.98 E-value=0.0014 Score=71.34 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=32.4
Q ss_pred CCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 203 RGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 203 ~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.+++|+|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 36799999999999999999999999999998775
No 381
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.96 E-value=0.0012 Score=63.75 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=29.1
Q ss_pred eEEEECCCCcHHHHHHHHhcc--CCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNH--DAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~--g~~Vtl~~r~~ 237 (433)
.|+|||+|..|..+|..|++. |.+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 379999999999999999987 88999998876
No 382
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.94 E-value=0.0097 Score=59.52 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGI-PSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
-++|+|||+|..|+.+|..+.+.|. +|+++++.+... .+. ...++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~------------------------------~~~--~~~e~-- 327 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEAN------------------------------MPG--SRREV-- 327 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCccc------------------------------CCC--CHHHH--
Confidence 4789999999999999999999996 799998865210 000 11222
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEE---eecCcC---------CCceeEEEEeCEEEEccCCCCCCc
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKT---TVGGQK---------CGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~---~~g~~~---------~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
+.+.+.++++++++.++++..+++...-.+++ ..+... ..++...+.+|.||+|+| ..|.
T Consensus 328 ---~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G--~~p~ 399 (467)
T TIGR01318 328 ---ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFG--FQPH 399 (467)
T ss_pred ---HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCc--CCCC
Confidence 23456799999999888886543211111222 111000 013356899999999999 5554
No 383
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0019 Score=59.06 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=31.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNC 67 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~ 67 (433)
..|.|||||.||-.+|..+++.|++|.++|.++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 5699999999999999999999999999999863
No 384
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.93 E-value=0.0045 Score=62.81 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=30.7
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
-.|+|||||..|+++|..+++.|.+|.++.+++
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 379999999999999999999999999998874
No 385
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.90 E-value=0.0019 Score=63.30 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=32.2
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+.+|+|||+|..|+-+|..|++.|.+|+++.|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4689999999999999999999999999999987
No 386
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.89 E-value=0.0022 Score=62.62 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=29.8
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.|+|||+|+.|.-+|..|++.|.+|+++.+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 38999999999999999999999999999876
No 387
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.88 E-value=0.011 Score=58.03 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=32.5
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.++++|||+|++|+-.|..|.+.|.+++++.|.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTD 39 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecC
Confidence 6799999999999999999999999999999988
No 388
>PLN02785 Protein HOTHEAD
Probab=96.88 E-value=0.0013 Score=67.28 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=32.6
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNC 67 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~ 67 (433)
...||+||||+|.+|+.+|.+|.+ +.+|+|+|++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 445999999999999999999998 699999999863
No 389
>PRK07236 hypothetical protein; Provisional
Probab=96.86 E-value=0.0018 Score=63.12 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=32.3
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..+|+|||+|.+|+.+|..|++.|.+|+++.+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999987
No 390
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.86 E-value=0.0014 Score=63.50 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=31.5
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
|||+|||+|++|+++|..+.+.|++|+++|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 689999999999999999999999999999975
No 391
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.80 E-value=0.0039 Score=61.13 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=29.7
Q ss_pred eEEEECCCCcHHHHHHHHhccC--CCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHD--AMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g--~~Vtl~~r~~ 237 (433)
.|+|||+|++|+-+|..|++.| .+|+++.+.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 5899999999999999999986 7999999987
No 392
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.78 E-value=0.0067 Score=59.57 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=30.5
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.|+|||+|..|+-+|..|++.|.+|+++.+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999999999999999999999886
No 393
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.76 E-value=0.0033 Score=61.22 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=30.5
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.|+|||+|++|.-+|..|++.|.+|+++.|++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 38999999999999999999999999999998
No 394
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.75 E-value=0.0064 Score=61.61 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=29.8
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.|+|||+|..|+++|..+++.|.+|.++.+.+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 58999999999999999999999999998875
No 395
>PRK09897 hypothetical protein; Provisional
Probab=96.72 E-value=0.0085 Score=60.46 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=28.7
Q ss_pred CeEEEECCCCcHHHHHHHHhccCC--CcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDA--MPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~--~Vtl~~r~~ 237 (433)
++|+|||+|++|+-++..|.+.+. +|+++.+++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 489999999999999999987654 799998865
No 396
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.72 E-value=0.003 Score=62.47 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=31.1
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
-.|+|||+|++|.-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~ 38 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGN 38 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 479999999999999999999999999999886
No 397
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.72 E-value=0.0033 Score=63.28 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=32.3
Q ss_pred CCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 202 FRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 202 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..+++++|||+|.+|+++|..|.+.|.+|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 457799999999999999999999999999987665
No 398
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.69 E-value=0.0037 Score=60.99 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=31.1
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecCc
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTV 238 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~ 238 (433)
.|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 7 dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 7 DVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 799999999999999999999999999998873
No 399
>PRK06184 hypothetical protein; Provisional
Probab=96.69 E-value=0.0051 Score=62.27 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=31.4
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
-.|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999999987
No 400
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.67 E-value=0.0055 Score=60.18 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=30.2
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEec
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRD 236 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~ 236 (433)
.+|+|||+|++|+-+|..|++.|.+|+++.+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999986
No 401
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.67 E-value=0.023 Score=47.66 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=25.3
Q ss_pred EEECCCCcHHHHHHHHhccC-----CCcEEEEecC
Q 013943 208 LVVGCGNSGMEVCLDLCNHD-----AMPSLVVRDT 237 (433)
Q Consensus 208 ~VvG~G~~a~e~a~~l~~~g-----~~Vtl~~r~~ 237 (433)
+|||+|++|+-++..|.+.. .+|+++.+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999873 3788887755
No 402
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.67 E-value=0.0027 Score=55.74 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=32.8
Q ss_pred CCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 201 DFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 201 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+..+++|+|||||.+|..-+..|.+.|++|+++....
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3568899999999999999999999999999986543
No 403
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.67 E-value=0.0043 Score=61.14 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=31.3
Q ss_pred CCCeEEEECCCCcHHHHHHHHh-ccCCCcEEEEecC
Q 013943 203 RGKRVLVVGCGNSGMEVCLDLC-NHDAMPSLVVRDT 237 (433)
Q Consensus 203 ~~~~v~VvG~G~~a~e~a~~l~-~~g~~Vtl~~r~~ 237 (433)
.+++|+|||+|++|+.+|..|+ +.|.+|+++.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5789999999999999999765 5689999999988
No 404
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.65 E-value=0.0022 Score=62.30 Aligned_cols=32 Identities=22% Similarity=0.523 Sum_probs=30.1
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+|+|||+|.+|.-+|..|++.|.+|+++.+.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 69999999999999999999999999999875
No 405
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.65 E-value=0.0057 Score=59.61 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=30.7
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.+|+|||+|+.|.-+|..|++.|.+|+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 379999999999999999999999999999775
No 406
>PRK08244 hypothetical protein; Provisional
Probab=96.64 E-value=0.0056 Score=61.84 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=31.2
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 369999999999999999999999999999987
No 407
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.02 Score=53.50 Aligned_cols=97 Identities=21% Similarity=0.149 Sum_probs=70.3
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDY 112 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (433)
-++|+|||||.+.+.-|..|.+.+.+|+++=+++.+. ..+ .
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~~----~ 183 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AEE----I 183 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cCH----H
Confidence 3699999999999999999999999999998876331 112 2
Q ss_pred HHHHHHHc-CCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 113 LEAYAKRF-EIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 113 l~~~~~~~-~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
+.+.+... .+++++++.+.++.-++ ... +...+. .++...+.+|.|+++.| ..|..
T Consensus 184 ~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~--v~l~~~----~~~~~~~~~~gvf~~iG--~~p~~ 240 (305)
T COG0492 184 LVERLKKNVKIEVLTNTVVKEILGDD-VEG--VVLKNV----KGEEKELPVDGVFIAIG--HLPNT 240 (305)
T ss_pred HHHHHHhcCCeEEEeCCceeEEecCc-cce--EEEEec----CCceEEEEeceEEEecC--CCCch
Confidence 23333333 68889999999988754 233 444442 13457899999999999 55554
No 408
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.62 E-value=0.0058 Score=59.71 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=30.9
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..|+|||+|..|.-+|..|++.|.+|+++.+.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 479999999999999999999999999999876
No 409
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.61 E-value=0.004 Score=60.44 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=71.6
Q ss_pred EEEECCCCcHHHHHHHH--hccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhcccccc
Q 013943 207 VLVVGCGNSGMEVCLDL--CNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARF 284 (433)
Q Consensus 207 v~VvG~G~~a~e~a~~l--~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (433)
|+|||+|+.|.-+|..| ++.|.+|.++.+.+....+... ..+.|.....+ .+.+ ....+. ..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~------tW~~~~~~~~~---~~~~---v~~~w~----~~ 65 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDR------TWCFWEKDLGP---LDSL---VSHRWS----GW 65 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCc------ccccccccccc---hHHH---HheecC----ce
Confidence 79999999999999999 7778899999887743222111 11122111110 0111 000000 00
Q ss_pred CCCCCCCCccccc-cc-CCCccccCchhhhhhhcCCeEEecC-ceEEeCCe----EEEcCCcEecccEEEEccCCCCC
Q 013943 285 GLDRPLLGPLQLK-NL-SGKTPVLDAGTLAKIKSGHIRVFPG-IKRLKRYA----VEFVNGRCENFDAIILATGYRSN 355 (433)
Q Consensus 285 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~~----v~~~~g~~~~~D~vi~atG~~~~ 355 (433)
.+..+........ .. ...+..+.....+.+..+++.+... |..+..++ +.+.+|+++.+++||-|.|..+.
T Consensus 66 ~v~~~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 66 RVYFPDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEeCCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 0001111100000 00 1122344445555555556655554 77776553 57889999999999999997654
No 410
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.58 E-value=0.0022 Score=63.81 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=31.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
.-++|+|||+|.+|+-+|..|.+.+.+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 45789999999999999999999999999998864
No 411
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.55 E-value=0.017 Score=57.46 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=32.0
Q ss_pred CCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 203 RGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 203 ~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..-.|+|||+|+.|.-+|..|++.|.+|.++.+.+
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34589999999999999999999999999999886
No 412
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.54 E-value=0.0053 Score=61.70 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=32.6
Q ss_pred CCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 203 RGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 203 ~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.+++++|||+|+.|+.+|..|++.|.+|+++.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 46799999999999999999999999999998876
No 413
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.54 E-value=0.0077 Score=56.86 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=71.5
Q ss_pred CCCCeEEECCChHHHHHHHHHHHc----CCCEE-EEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKER----GIPSI-LLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSK 106 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~----g~~v~-iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (433)
....|.|||+|.-|-.+|+.|.++ |.+|. +|+..... .-+-.
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm---------------------------------~kiLP 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM---------------------------------EKILP 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh---------------------------------hhhhH
Confidence 447799999999999999999875 34443 33332100 01122
Q ss_pred HHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccC
Q 013943 107 QQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVP 178 (433)
Q Consensus 107 ~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p 178 (433)
+.+.++..+.+++.|+.++-+..|.++.... +.+.+.+.+| ..+..|.||+|+| -.|+..
T Consensus 393 eyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~lkL~dG--------~~l~tD~vVvavG--~ePN~e 452 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLVLKLSDG--------SELRTDLVVVAVG--EEPNSE 452 (659)
T ss_pred HHHHHHHHHHHHhcCceeccchhhhhhhhhc--cceEEEecCC--------CeeeeeeEEEEec--CCCchh
Confidence 3334445556777899999999998887765 4566888887 8999999999999 556543
No 414
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.54 E-value=0.042 Score=52.14 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=83.5
Q ss_pred hHHHhhhh-cccCchHHHHhhccCCCCccCCCCeEEECCChHHHHHHHHHHHcC----CCEEEEecCCCCCCcccccccC
Q 013943 4 DCLREIEG-KQAHDPIFIEKMNKSSPRCICVPGPVIVGAGPSGLATAACLKERG----IPSILLERSNCIASLWQLKTYD 78 (433)
Q Consensus 4 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaG~aGl~~A~~L~~~g----~~v~iie~~~~~gg~w~~~~~~ 78 (433)
+|.+.+.+ +.=|+.-+++... +..+...|.|||+|.++..+-..|...- .++..+-|+..+- .--|.
T Consensus 161 ~~f~~l~~~~vfHss~~~~~~~----~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~----p~d~S 232 (436)
T COG3486 161 PCFRSLIGERVFHSSEYLERHP----ELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL----PMDYS 232 (436)
T ss_pred hHHhCcCccceeehHHHHHhhH----HhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC----ccccc
Confidence 35555433 3344444443322 1223344999999999999999887642 2344555554220 00011
Q ss_pred ce--eeecCCceeecCCCCCCC----------CCCCCCC---HHHHHHHHHHHHH---HcCCcceecceEEEEEEeCCCC
Q 013943 79 RL--RLHLPKQFCELPLMGFPS----------EFPTYPS---KQQFVDYLEAYAK---RFEIRPRFNETVSQAEYDATIR 140 (433)
Q Consensus 79 ~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~---~~~~~~~l~~~~~---~~~l~~~~~~~v~~v~~~~~~~ 140 (433)
.+ ....|.....|...+.+. ...+ ++ -.++.+.+.+..- +..+.+...++|++++..++ +
T Consensus 233 kf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~Ykg-I~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g 310 (436)
T COG3486 233 KFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKG-ISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-G 310 (436)
T ss_pred hhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccc-cCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-c
Confidence 11 111121111111111000 0011 22 2344444444311 12355688899999999887 4
Q ss_pred eEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCC
Q 013943 141 FWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPE 179 (433)
Q Consensus 141 ~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~ 179 (433)
.+++.+... ..++..++++|.||+||| -+..+|.
T Consensus 311 ~~~l~~~~~---~~~~~~t~~~D~vIlATG--Y~~~~P~ 344 (436)
T COG3486 311 RYRLTLRHH---ETGELETVETDAVILATG--YRRAVPS 344 (436)
T ss_pred eEEEEEeec---cCCCceEEEeeEEEEecc--cccCCch
Confidence 477877642 134568999999999999 5555553
No 415
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.53 E-value=0.0025 Score=64.74 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=33.5
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
...+|+||||+|.+|..+|.+|.+.+.+|+++|.+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 357999999999999999999998899999999984
No 416
>PRK06753 hypothetical protein; Provisional
Probab=96.53 E-value=0.0056 Score=59.40 Aligned_cols=33 Identities=12% Similarity=0.304 Sum_probs=31.3
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecCc
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTV 238 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~ 238 (433)
+|+|||||.+|+-+|..|++.|.+|+++.+++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 799999999999999999999999999999983
No 417
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.51 E-value=0.0058 Score=59.48 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=30.3
Q ss_pred eEEEECCCCcHHHHHHHHhccC-CCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHD-AMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g-~~Vtl~~r~~ 237 (433)
.|+|||+|++|+-+|..|++.| .+|+++.|.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 3899999999999999999999 9999999987
No 418
>PRK07588 hypothetical protein; Provisional
Probab=96.50 E-value=0.0039 Score=60.94 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=30.6
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 79999999999999999999999999999887
No 419
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.50 E-value=0.0023 Score=65.26 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=30.4
Q ss_pred CeEEECCChHHHHHHHHHHHcC-CCEEEEecCC
Q 013943 35 GPVIVGAGPSGLATAACLKERG-IPSILLERSN 66 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g-~~v~iie~~~ 66 (433)
|+||||+|.+|+.+|.+|.+.+ ++|+|+|++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999986
No 420
>PRK07190 hypothetical protein; Provisional
Probab=96.49 E-value=0.014 Score=58.71 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=31.1
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..|+|||+|++|+-+|..|++.|.+|.++.+.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 479999999999999999999999999999887
No 421
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.48 E-value=0.0064 Score=54.95 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=28.6
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcC-------CCEEEEecCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERG-------IPSILLERSN 66 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g-------~~v~iie~~~ 66 (433)
.+.+|+|||+|..|++.|..+.+.. .+|++++...
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 4578999999999999999988843 4788886653
No 422
>PRK07045 putative monooxygenase; Reviewed
Probab=96.48 E-value=0.01 Score=57.86 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=31.8
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecCc
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTV 238 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~ 238 (433)
.+|+|||+|++|+-+|..|++.|.+|+++.+.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4799999999999999999999999999999883
No 423
>PRK08013 oxidoreductase; Provisional
Probab=96.47 E-value=0.0072 Score=59.28 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=31.7
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecCc
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTV 238 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~ 238 (433)
..|+|||+|++|.-+|..|++.|.+|+++.+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4799999999999999999999999999999873
No 424
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.45 E-value=0.011 Score=54.76 Aligned_cols=104 Identities=18% Similarity=0.090 Sum_probs=77.0
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.-++++|||||+.++.+|--++-.|.++.++=|.+.+=. --.+.+.+
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR---------------------------------~FD~~i~~ 234 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLR---------------------------------GFDEMISD 234 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhc---------------------------------chhHHHHH
Confidence 447999999999999999999999998887766653200 01255667
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCccCC
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVVPE 179 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~p~ 179 (433)
.+.+.....++++|.++.++.+....+. ...+.+..+ .....|.|+.|+| ..|+...
T Consensus 235 ~v~~~~~~~ginvh~~s~~~~v~K~~~g-~~~~i~~~~--------~i~~vd~llwAiG--R~Pntk~ 291 (478)
T KOG0405|consen 235 LVTEHLEGRGINVHKNSSVTKVIKTDDG-LELVITSHG--------TIEDVDTLLWAIG--RKPNTKG 291 (478)
T ss_pred HHHHHhhhcceeecccccceeeeecCCC-ceEEEEecc--------ccccccEEEEEec--CCCCccc
Confidence 7777888889999999999999887763 333444443 4556899999999 6665443
No 425
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.44 E-value=0.014 Score=56.91 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=29.6
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEec
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRD 236 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~ 236 (433)
.|+|||+|++|.-+|..|++.|.+|.++.+.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999987
No 426
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.44 E-value=0.0059 Score=61.77 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=27.9
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.|+|+|||+|.+|+-.+..|.+.|-+++++.+++
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~ 34 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSD 34 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCC
Confidence 3799999999999999999999999999999887
No 427
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.43 E-value=0.0087 Score=58.62 Aligned_cols=30 Identities=13% Similarity=0.382 Sum_probs=28.4
Q ss_pred EEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 208 LVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 208 ~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+|||+|++|+-+|..+++.|.+|+++.+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~ 30 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK 30 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc
Confidence 599999999999999999999999999887
No 428
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.42 E-value=0.043 Score=57.24 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=64.8
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCC-CEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGI-PSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~-~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
-++|+|||+|..|+-+|..+.+.|. +|+++.+.+... ++. ...++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~------------------------------~~~--~~~e~~- 497 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVS------------------------------MPG--SRKEVV- 497 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCccc------------------------------CCC--CHHHHH-
Confidence 4789999999999999999999985 799998764220 010 122222
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEE---ee------cCc---CCCceeEEEEeCEEEEccC
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKT---TV------GGQ---KCGVEEMEYRCRWLVVATG 170 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~---~~------g~~---~~~~~~~~~~~d~viiAtG 170 (433)
.+.+.|+++++++.++++..+++...-.+.+ .. |.. ...++...+.+|.||+|+|
T Consensus 498 ----~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG 564 (639)
T PRK12809 498 ----NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFG 564 (639)
T ss_pred ----HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcC
Confidence 2456699999998888886543211111211 11 100 0023456899999999999
No 429
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.40 E-value=0.009 Score=55.62 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=30.3
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999887
No 430
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.37 E-value=0.0074 Score=59.47 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=31.9
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..+|+|||+|..|+-+|..|++.|.+|+++.+++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 3579999999999999999999999999999987
No 431
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.035 Score=55.06 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCC-cEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAM-PSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~-Vtl~~r~~ 237 (433)
..+|+|||+|++|+-+|..|.+.|.. +.++.++.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 45899999999999999999999977 88888886
No 432
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.30 E-value=0.0076 Score=59.01 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=30.5
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+|+|||+|+.|.-+|..|++.|.+|.++.+.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999876
No 433
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.30 E-value=0.0073 Score=61.31 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=72.1
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHH
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYL 113 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (433)
..-+|||||.=|+.+|..|...|.++.+++-.+.+.-. ---..-...|
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMer--------------------------------QLD~~ag~lL 193 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMER--------------------------------QLDRTAGRLL 193 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHH--------------------------------hhhhHHHHHH
Confidence 34799999999999999999999999998665522100 0011223456
Q ss_pred HHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 114 EAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 114 ~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
++...+.+++++++...+.+.... ..-.+...+| ..+.+|.||.|+| -+|+.
T Consensus 194 ~~~le~~Gi~~~l~~~t~ei~g~~--~~~~vr~~DG--------~~i~ad~VV~a~G--IrPn~ 245 (793)
T COG1251 194 RRKLEDLGIKVLLEKNTEEIVGED--KVEGVRFADG--------TEIPADLVVMAVG--IRPND 245 (793)
T ss_pred HHHHHhhcceeecccchhhhhcCc--ceeeEeecCC--------CcccceeEEEecc--ccccc
Confidence 677778899988887766665533 3345777787 7899999999999 66654
No 434
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.27 E-value=0.0091 Score=52.71 Aligned_cols=35 Identities=11% Similarity=0.218 Sum_probs=31.1
Q ss_pred CCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEec
Q 013943 202 FRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRD 236 (433)
Q Consensus 202 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~ 236 (433)
..+++|+|||||.+|..=+..|.+.|++||++...
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46789999999999999999999999999998533
No 435
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.25 E-value=0.004 Score=61.56 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.5
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.|+|||||..|+-.|..+++.|.+|.|+.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 38999999999999999999999999999887
No 436
>PLN02697 lycopene epsilon cyclase
Probab=96.22 E-value=0.014 Score=58.80 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=29.3
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEec
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRD 236 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~ 236 (433)
-.|+|||+|+.|+-+|..|++.|.+|.++.+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 47999999999999999999999999999664
No 437
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.016 Score=56.27 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.3
Q ss_pred CeEEEECCCCcHHHHHHHHhccC--C-CcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHD--A-MPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g--~-~Vtl~~r~~ 237 (433)
++|+|||+|++|+.+|..|.+.- . .|+++...+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 48999999999999999999863 2 388887666
No 438
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.20 E-value=0.0085 Score=52.51 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=32.2
Q ss_pred CCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEec
Q 013943 201 DFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRD 236 (433)
Q Consensus 201 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~ 236 (433)
+..+++|+|||+|..|...+..|.+.|++|+++.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 467899999999999999999999999999998643
No 439
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.19 E-value=0.041 Score=53.99 Aligned_cols=93 Identities=22% Similarity=0.180 Sum_probs=67.1
Q ss_pred EEECCChHHHHHH-HHHH----HcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 37 VIVGAGPSGLATA-ACLK----ERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 37 vIIGaG~aGl~~A-~~L~----~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
+|++-|+.|+..+ ..+. +.|.+|++++..+.. ....++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence 6788889998887 4443 359999999776511 12346788
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCC
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~ 171 (433)
.+.+.+++.+++++.+++|++++..++ .+...... +++...+++|.||+|+|.
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~~--~V~~v~~~-----~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEGG--RVTAVWTR-----NHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeCC--EEEEEEee-----CCceEEEECCEEEEeCCC
Confidence 888888889999999999999987653 33222221 222467999999999994
No 440
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.19 E-value=0.013 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=23.8
Q ss_pred CeEEEcCCcEecccEEEEccCCCCCC
Q 013943 331 YAVEFVNGRCENFDAIILATGYRSNV 356 (433)
Q Consensus 331 ~~v~~~~g~~~~~D~vi~atG~~~~~ 356 (433)
..+.+++|.++.++.+.+|||++|..
T Consensus 81 hci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 81 HCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred ceEEecCCceeeEEEEEEecCCCcce
Confidence 45889999999999999999999986
No 441
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.16 E-value=0.01 Score=58.17 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=73.4
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhcccccc
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARF 284 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 284 (433)
-.|+|||+|++|.-+|..|++.|.+|.++.+.+..-.|..-. .......+....+..... +.. .....
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~---~~~~~~~l~~l~~~~~~~-i~~--------~v~~~ 71 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCG---GGLSPRALEELIPDFDEE-IER--------KVTGA 71 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcccc---ceechhhHHHhCCCcchh-hhe--------eeeee
Confidence 379999999999999999999999999999987433322210 001111111111111100 101 11111
Q ss_pred CCCCCCCCccccc-----ccCCCccccCchhhhhhhcCCeEEecC--ceEEe--CCeE---EEcCCcEecccEEEEccCC
Q 013943 285 GLDRPLLGPLQLK-----NLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLK--RYAV---EFVNGRCENFDAIILATGY 352 (433)
Q Consensus 285 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~--~~~v---~~~~g~~~~~D~vi~atG~ 352 (433)
.+..+ ....... .....+..++..+.+...+.+.+++.+ +..+. ++++ ...++.++.+++||.|+|.
T Consensus 72 ~~~~~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 72 RIYFP-GEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred EEEec-CCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 11111 1111111 111123455666666677788888887 44433 3232 2233467999999999996
Q ss_pred CC
Q 013943 353 RS 354 (433)
Q Consensus 353 ~~ 354 (433)
..
T Consensus 151 ~s 152 (396)
T COG0644 151 NS 152 (396)
T ss_pred ch
Confidence 55
No 442
>PRK10015 oxidoreductase; Provisional
Probab=96.16 E-value=0.007 Score=59.82 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=31.1
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
-.|+|||+|+.|.-+|..|++.|.+|.++.|.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 379999999999999999999999999999887
No 443
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.10 E-value=0.0061 Score=58.22 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=36.3
Q ss_pred cCCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 013943 31 ICVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIAS 70 (433)
Q Consensus 31 ~~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg 70 (433)
...||++|||+|.-|+++|..|++.|.+|+++|+....||
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 4579999999999999999999999999999999965555
No 444
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.08 E-value=0.029 Score=53.92 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCC
Q 013943 104 PSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEA 175 (433)
Q Consensus 104 ~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p 175 (433)
....++.+.+...+++.+++++++++|+++ .+ ..|.+.+..+ ...+++|.||+|||..+.|
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~~v~~~~~-------~~~~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTLRFETPDG-------QSTIEADAVVLALGGASWS 143 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcEEEEECCC-------ceEEecCEEEEcCCCcccc
Confidence 478999999999999999999999999999 22 3477776432 1469999999999975444
No 445
>PRK13984 putative oxidoreductase; Provisional
Probab=96.05 E-value=0.059 Score=55.95 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=25.1
Q ss_pred CCeEEECCChHHHHHHHHHHHcCC------CEEEEe
Q 013943 34 PGPVIVGAGPSGLATAACLKERGI------PSILLE 63 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~------~v~iie 63 (433)
++|+|||||..|+-+|..|.+.+. +|+++.
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 689999999999999999998753 566653
No 446
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.02 E-value=0.026 Score=55.06 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=31.1
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.+|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 479999999999999999999999999999886
No 447
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.01 E-value=0.011 Score=58.30 Aligned_cols=32 Identities=31% Similarity=0.614 Sum_probs=30.0
Q ss_pred eEEEECCCCcHHHHHHHHhccCC-CcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDA-MPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~-~Vtl~~r~~ 237 (433)
+|+|||+|..|+-+|..|++.|. +|+++.|++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 79999999999999999999985 999999987
No 448
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.016 Score=53.32 Aligned_cols=103 Identities=21% Similarity=0.135 Sum_probs=76.0
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHHHHH
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVDYLE 114 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 114 (433)
+-+|||||..+|.||-.|.-.|+++++.=|+--+.| -.+++.+.+.
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG----------------------------------FDqdmae~v~ 245 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG----------------------------------FDQDMAELVA 245 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc----------------------------------ccHHHHHHHH
Confidence 679999999999999999999999998867542221 1367788888
Q ss_pred HHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCcc
Q 013943 115 AYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAVV 177 (433)
Q Consensus 115 ~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~~ 177 (433)
+..++.|+.+......+.++..++ +.++|...+- ..++...-.||.|++|.| ..+..
T Consensus 246 ~~m~~~Gikf~~~~vp~~Veq~~~-g~l~v~~k~t---~t~~~~~~~ydTVl~AiG--R~~~~ 302 (503)
T KOG4716|consen 246 EHMEERGIKFLRKTVPERVEQIDD-GKLRVFYKNT---NTGEEGEEEYDTVLWAIG--RKALT 302 (503)
T ss_pred HHHHHhCCceeecccceeeeeccC-CcEEEEeecc---cccccccchhhhhhhhhc--cccch
Confidence 889999999887777778877766 3455544331 122345668999999999 44443
No 449
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.98 E-value=0.014 Score=61.71 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=35.7
Q ss_pred CCCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 199 GEDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 199 ~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+....+++|.|||+|+.|+-+|..|.+.|+.|++..|++
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 345678999999999999999999999999999999988
No 450
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.85 E-value=0.096 Score=53.86 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=63.9
Q ss_pred CCCeEEECCChHHHHHHHHHHHcC-CCEEEEecCCCCCCcccccccCceeeecCCceeecCCCCCCCCCCCCCCHHHHHH
Q 013943 33 VPGPVIVGAGPSGLATAACLKERG-IPSILLERSNCIASLWQLKTYDRLRLHLPKQFCELPLMGFPSEFPTYPSKQQFVD 111 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g-~~v~iie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (433)
.++|+|||+|..|+.+|..+.+.+ .+++++.+.+.. ..+ ....++.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~------------------------------~~~--~~~~~~~- 313 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTRE------------------------------DMP--AHDEEIE- 313 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcc------------------------------cCC--CCHHHHH-
Confidence 578999999999999999998888 578888776411 000 0112222
Q ss_pred HHHHHHHHcCCcceecceEEEEEEeCCCCeEEEE---Ee------ecCcCC-CceeEEEEeCEEEEccCC
Q 013943 112 YLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVK---TT------VGGQKC-GVEEMEYRCRWLVVATGE 171 (433)
Q Consensus 112 ~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~---~~------~g~~~~-~~~~~~~~~d~viiAtG~ 171 (433)
.+.+.++++++++.+..+..+++ +...++ .. +|.... .++...+.+|.||+|+|.
T Consensus 314 ----~a~~~GVki~~~~~~~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 314 ----EALREGVEINWLRTPVEIEGDEN-GATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred ----HHHHcCCEEEecCCcEEEEcCCC-CEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 23456899999988888875543 221111 11 110000 234568999999999993
No 451
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.84 E-value=0.019 Score=58.62 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3579999999999999999999999999999987
No 452
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.83 E-value=0.027 Score=51.52 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=30.8
Q ss_pred ceEEeC--CeEEEcCCcEecccEEEEccCCCCCCCCccccc
Q 013943 325 IKRLKR--YAVEFVNGRCENFDAIILATGYRSNVPSWLKES 363 (433)
Q Consensus 325 v~~~~~--~~v~~~~g~~~~~D~vi~atG~~~~~~~~~~~~ 363 (433)
|.++++ +.|.+.+|++|.+|++|+|+|..-+. +-++.+
T Consensus 114 v~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y-~~IkGl 153 (446)
T KOG3851|consen 114 VKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDY-GKIKGL 153 (446)
T ss_pred HHhcCCCcCeEEccCCcEEeeeeEeeeeeceecc-chhcCh
Confidence 455554 35889999999999999999999998 566665
No 453
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.81 E-value=0.012 Score=57.67 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=35.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccc
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKT 76 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~ 76 (433)
..|||||+|.|..-..+|..|.+.|.+|+.+|+++..||.|...+
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~ 47 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN 47 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence 569999999999999999999999999999999999999988754
No 454
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.78 E-value=0.024 Score=55.63 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=31.5
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
++|+|||+|..|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 689999999999999999999999999999887
No 455
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.76 E-value=0.075 Score=53.22 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=30.3
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..|+|||+|..|+-+|..+++.|.+|.++.+.+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999998865
No 456
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.71 E-value=0.043 Score=53.68 Aligned_cols=32 Identities=16% Similarity=0.418 Sum_probs=30.1
Q ss_pred eEEEECCCCcHHHHHHHHhcc--CCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNH--DAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~--g~~Vtl~~r~~ 237 (433)
.|+|||||.+|+-+|..|++. |.+|+++.+.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 699999999999999999998 99999999875
No 457
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.68 E-value=0.02 Score=55.99 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=29.8
Q ss_pred CeEEEECCCCcHHHHHHHHhcc---CCCcEEEEec
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNH---DAMPSLVVRD 236 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~---g~~Vtl~~r~ 236 (433)
-+|+|||+|+.|.-+|..|++. |.+|+++.|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3799999999999999999998 9999999995
No 458
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.61 E-value=0.027 Score=55.91 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=29.3
Q ss_pred eEEEECCCCcHHHHHHHHhc----cCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCN----HDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~----~g~~Vtl~~r~~ 237 (433)
.|+|||+|++|+-+|..|++ .|.+|+++.+++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 58999999999999999998 799999999854
No 459
>PRK06996 hypothetical protein; Provisional
Probab=95.49 E-value=0.015 Score=57.03 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=29.5
Q ss_pred CeEEEECCCCcHHHHHHHHhccC----CCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHD----AMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g----~~Vtl~~r~~ 237 (433)
..|+|||+|++|.-+|..|++.| .+|+++.+.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 47999999999999999999986 3699999875
No 460
>PRK11445 putative oxidoreductase; Provisional
Probab=95.46 E-value=0.024 Score=54.53 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=29.4
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.|+|||+|+.|.-+|..|++. .+|+++.|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 689999999999999999999 9999999887
No 461
>PRK06126 hypothetical protein; Provisional
Probab=95.41 E-value=0.08 Score=54.22 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=31.9
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..+|+|||+|++|+-+|..|++.|.+|+++.|.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4589999999999999999999999999999887
No 462
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.41 E-value=0.011 Score=45.60 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=31.6
Q ss_pred CCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 201 DFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 201 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+..+++|+|||+|..|..-+..|.+.|++|+++....
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3568999999999999999999999999999997663
No 463
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.35 E-value=0.016 Score=48.18 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred EEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhccccccCC
Q 013943 207 VLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLGDTARFGL 286 (433)
Q Consensus 207 v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (433)
|+|+|+|.+|.-+|..|++.|.+|+++.|++ +.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~---------------------------------------------- 33 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RL---------------------------------------------- 33 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HH----------------------------------------------
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cH----------------------------------------------
Q ss_pred CCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC-ceEEeCCeEEEcCC--cEecccEEEEcc
Q 013943 287 DRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG-IKRLKRYAVEFVNG--RCENFDAIILAT 350 (433)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-v~~~~~~~v~~~~g--~~~~~D~vi~at 350 (433)
+.+++.++.+... -...........+. ..-++|+||+|+
T Consensus 34 -------------------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 34 -------------------------EAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp -------------------------HHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred -------------------------HhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
No 464
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.31 E-value=0.041 Score=56.36 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=31.8
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
...|+|||+|++|+-+|..|++.|.+|+++.+.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3579999999999999999999999999999887
No 465
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.26 E-value=0.038 Score=54.01 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=31.5
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.+|+|||+|+.|+-+|..|++.|.+|+++.+++
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 479999999999999999999999999999998
No 466
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.25 E-value=0.024 Score=56.06 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=33.7
Q ss_pred CCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 201 DFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 201 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
...+++|.|||+|+.|+.+|..|++.|..||++.+.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~ 156 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVA 156 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcC
Confidence 3556999999999999999999999999999987777
No 467
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.25 E-value=0.089 Score=50.91 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=29.6
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
-.|+|||||..|+|.|...++.|++.+|+..+-
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 379999999999999999999999988886654
No 468
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.24 E-value=0.022 Score=57.30 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=34.4
Q ss_pred ccCCCCeEEECCChHHHHHHHHHHHc-CCCEEEEecCCCC
Q 013943 30 CICVPGPVIVGAGPSGLATAACLKER-GIPSILLERSNCI 68 (433)
Q Consensus 30 ~~~~~dVvIIGaG~aGl~~A~~L~~~-g~~v~iie~~~~~ 68 (433)
....||.||||||-||+.+|.+|.+. .++|+++|++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45679999999999999999999987 4799999998644
No 469
>PRK06185 hypothetical protein; Provisional
Probab=95.22 E-value=0.035 Score=54.56 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=31.6
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
...|+|||+|.+|+-+|..|++.|.+|+++.+.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3579999999999999999999999999999886
No 470
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.17 E-value=0.067 Score=55.33 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=33.1
Q ss_pred CCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 202 FRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 202 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
....+|+|||||..|+-+|..|++.|.+|+++.|.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 345689999999999999999999999999999976
No 471
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.15 E-value=0.046 Score=54.44 Aligned_cols=52 Identities=25% Similarity=0.266 Sum_probs=35.9
Q ss_pred ccCchhhhhhhcCCeEEecC-ceEE--eCC----eEEEcCCcEecccEEEEccCCCCCC
Q 013943 305 VLDAGTLAKIKSGHIRVFPG-IKRL--KRY----AVEFVNGRCENFDAIILATGYRSNV 356 (433)
Q Consensus 305 ~~~~~~~~~~~~~~v~~~~~-v~~~--~~~----~v~~~~g~~~~~D~vi~atG~~~~~ 356 (433)
.++..+.+...+.+|+++.+ |..+ +++ .|.+.+|+++++|++|=|+|+....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence 55566666667789999887 5444 333 3677899999999999999997654
No 472
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.13 E-value=0.018 Score=40.65 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=27.0
Q ss_pred EECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 209 VVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 209 VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
|||+|.+|+-+|..|++.+.+|+++.+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999888
No 473
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.10 E-value=0.021 Score=47.88 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=29.6
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
+|.|||||..|.++|..|.++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 38999999999999999999999999998764
No 474
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.07 E-value=0.048 Score=53.26 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=31.5
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.+|+|||+|..|+-+|..|++.|.+|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 479999999999999999999999999999998
No 475
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.03 E-value=0.21 Score=50.61 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=30.8
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
-.|+|||+|..|+-.|..+++.|.+|.++.+.+
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 379999999999999999999999999999877
No 476
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.077 Score=46.15 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=25.7
Q ss_pred CCeEEEECCCCcHHHHHHHHhccCCCcEEEE
Q 013943 204 GKRVLVVGCGNSGMEVCLDLCNHDAMPSLVV 234 (433)
Q Consensus 204 ~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~ 234 (433)
..+|+|||+|+.|.-.|..++++.-+-.|+.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfE 38 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFE 38 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEe
Confidence 4589999999999999999999766666653
No 477
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.98 E-value=0.16 Score=50.28 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=29.6
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
-.|+|||||..|+|.|...++.|.++.++.-+.
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 479999999999999999999999988886655
No 478
>PRK07538 hypothetical protein; Provisional
Probab=94.88 E-value=0.055 Score=53.28 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=30.7
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+|+|||+|..|+-+|..|++.|.+|+++.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 69999999999999999999999999999987
No 479
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.85 E-value=0.061 Score=52.36 Aligned_cols=63 Identities=24% Similarity=0.302 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 103 YPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 103 ~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
......+...+.+.+.+ +++++++++|++++.++ +.|.|.+.++ ..+.+|.||+|+|.++...
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~~v~t~~g--------~~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDG--EGWQLLDANG--------EVIAASVVVLANGAQAGQL 193 (381)
T ss_pred ccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeEEEEeCCC--------CEEEcCEEEEcCCcccccc
Confidence 45667778888887777 99999999999998765 4588887765 5689999999999876443
No 480
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=94.84 E-value=0.035 Score=52.76 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=30.5
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.+|+|||||.+|+-.|..|.++|-+|.++..+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 589999999999999999999999999997765
No 481
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.79 E-value=0.27 Score=46.72 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcceecceEEEEEEeCCCCeEEEEEeecCcCCCceeEEEEeCEEEEccCCCCCCc
Q 013943 102 TYPSKQQFVDYLEAYAKRFEIRPRFNETVSQAEYDATIRFWRVKTTVGGQKCGVEEMEYRCRWLVVATGENAEAV 176 (433)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~l~~~~~~~v~~v~~~~~~~~~~v~~~~g~~~~~~~~~~~~~d~viiAtG~~~~p~ 176 (433)
++.+...+...+.+.+.+.+++++.+++|++++..++ ..+.|.+.+ ..+++|.||+|+|.++...
T Consensus 132 g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~-~~~~v~~~~---------g~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGE-KVTAIVTPS---------GDVQADQVVLAAGAWAGEL 196 (337)
T ss_pred ceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCC-EEEEEEcCC---------CEEECCEEEEcCChhhhhc
Confidence 4567788899999999999999999999999997653 223344443 4789999999999876543
No 482
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.72 E-value=0.2 Score=50.49 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=28.4
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.|+|||+|..|+-.|..+++.|. |+++.+.+
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~ 34 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAP 34 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccC
Confidence 69999999999999999999997 99998875
No 483
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.036 Score=52.42 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=43.0
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSNCIASLWQLKTYD 78 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~ 78 (433)
.+||||||.|..--.+|.+..+.|.+|+-+|+++..||.|.....+
T Consensus 8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred hccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 5899999999999999999999999999999999999999987665
No 484
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.042 Score=49.07 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=30.7
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
+++|||+|..|..+|..|.+.|++|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 58999999999999999999999999999986
No 485
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=94.60 E-value=0.066 Score=51.90 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=33.0
Q ss_pred CCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 203 RGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 203 ~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
..++++|||||.+|++.|.+|++.|-+|+|+.+.|
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 35799999999999999999999999999999988
No 486
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.59 E-value=0.033 Score=54.17 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=31.2
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
++|+|||||.+|+++|..|++.|.+|+++..++
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 589999999999999999999999999999776
No 487
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.57 E-value=0.075 Score=49.95 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=30.8
Q ss_pred CeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 205 KRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 205 ~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.+++|+|+|.+|.=++..|++.|.+|+++.|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999975
No 488
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.46 E-value=0.062 Score=57.24 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=30.0
Q ss_pred eEEEECCCCcHHHHHHHHhcc--CCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNH--DAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~--g~~Vtl~~r~~ 237 (433)
+|+|||+|+.|+-+|..|++. |.+|+++.+.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 799999999999999999998 78999999887
No 489
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.44 E-value=0.065 Score=47.09 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=32.7
Q ss_pred CCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 201 DFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 201 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
...+++|+|||||..|..=+..|.+.|++|+++....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 4678999999999999999999999999999985443
No 490
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.36 E-value=0.06 Score=53.60 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=32.0
Q ss_pred CCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEe
Q 013943 200 EDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVR 235 (433)
Q Consensus 200 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r 235 (433)
.+..+++|+|||||..|..=+..|.+.|++|+++..
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 346789999999999999999999999999999853
No 491
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.34 E-value=0.05 Score=46.76 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=28.2
Q ss_pred CeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 35 GPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 35 dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
.|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 38999999999999999999999999999975
No 492
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.24 E-value=0.056 Score=50.91 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=31.5
Q ss_pred CCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 33 VPGPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 33 ~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
+.+|.|||+|..|..+|..|++.|++|+++|+.+
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 3579999999999999999999999999999975
No 493
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.20 E-value=0.21 Score=44.96 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=30.4
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+++|||+|..|+-+|..|...|.+||++.++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 68999999999999999999999999998876
No 494
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.17 E-value=0.069 Score=50.27 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=32.8
Q ss_pred CCCCeEEECCChHHHHHHHHHHHcCCCEEEEecCC
Q 013943 32 CVPGPVIVGAGPSGLATAACLKERGIPSILLERSN 66 (433)
Q Consensus 32 ~~~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~~ 66 (433)
.++.|.|||+|..|...|..++..|++|+++|..+
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 56789999999999999999999999999999975
No 495
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.17 E-value=0.2 Score=47.28 Aligned_cols=78 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred CCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEEecCcceecccccCCcchhhhHHHHhhcchHHHHHHHHHHHHHhhc
Q 013943 200 EDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDTVHVLPQEMLGKSTFGLSMWLLKWLPMRLVDKLLLVVSWLMLG 279 (433)
Q Consensus 200 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 279 (433)
+.....+++|||+|..|.-+|..|++.|.+|+++.|++
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~------------------------------------------ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD------------------------------------------ 38 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC------------------------------------------
Q ss_pred cccccCCCCCCCCcccccccCCCccccCchhhhhhhcCCeEEecC--ceEEeCCeEEEcCCcEecccEEEEcc
Q 013943 280 DTARFGLDRPLLGPLQLKNLSGKTPVLDAGTLAKIKSGHIRVFPG--IKRLKRYAVEFVNGRCENFDAIILAT 350 (433)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--v~~~~~~~v~~~~g~~~~~D~vi~at 350 (433)
.+.+.+.++++... -..+..-.+.......-++|+||+|+
T Consensus 39 -------------------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilav 80 (313)
T PRK06249 39 -------------------------------YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGL 80 (313)
T ss_pred -------------------------------HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEe
No 496
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.15 E-value=0.04 Score=46.12 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=31.9
Q ss_pred CCCCCCeEEEECCCCcHHHHHHHHhccCCCcEEEE
Q 013943 200 EDFRGKRVLVVGCGNSGMEVCLDLCNHDAMPSLVV 234 (433)
Q Consensus 200 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~ 234 (433)
.+..+++|+|||||..|..-+..|.+.|++|+++.
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 34678999999999999999999999999999984
No 497
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=94.11 E-value=0.044 Score=53.55 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=30.4
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
+|+|||+|..|+|+|..|++.|.+|+++.+++
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 68999999999999999999999999998776
No 498
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.99 E-value=0.077 Score=44.44 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=29.7
Q ss_pred CCeEEECCChHHHHHHHHHHHcCCCEEEEecC
Q 013943 34 PGPVIVGAGPSGLATAACLKERGIPSILLERS 65 (433)
Q Consensus 34 ~dVvIIGaG~aGl~~A~~L~~~g~~v~iie~~ 65 (433)
++|+|||||..|..-+..|.+.|.+|+++++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 78999999999999999999999999999653
No 499
>PRK06175 L-aspartate oxidase; Provisional
Probab=93.96 E-value=0.44 Score=47.24 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=27.7
Q ss_pred eEEEECCCCcHHHHHHHHhccCCCcEEEEecC
Q 013943 206 RVLVVGCGNSGMEVCLDLCNHDAMPSLVVRDT 237 (433)
Q Consensus 206 ~v~VvG~G~~a~e~a~~l~~~g~~Vtl~~r~~ 237 (433)
.|+|||+|..|+-.|..+. .|.+|.++.+.+
T Consensus 6 DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~ 36 (433)
T PRK06175 6 DVLIVGSGVAGLYSALNLR-KDLKILMVSKGK 36 (433)
T ss_pred cEEEECchHHHHHHHHHhc-cCCCEEEEecCC
Confidence 6999999999999998874 689999998876
No 500
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=93.96 E-value=0.075 Score=52.18 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEecCCCCCCcccccccC--ceeeec
Q 013943 43 PSGLATAACLKERGIPSILLERSNCIASLWQLKTYD--RLRLHL 84 (433)
Q Consensus 43 ~aGl~~A~~L~~~g~~v~iie~~~~~gg~w~~~~~~--~~~~~~ 84 (433)
+|||+||..|++.|++|+|+|+++.+||.-.....+ +.....
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~ 44 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFEL 44 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEES
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecC
Confidence 589999999999999999999999999976655454 444443
Done!