BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013944
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 333 ILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAM-LASIV 375
++H D P N+ TSSGQI DFGL R + F M L S+V
Sbjct: 141 VVHRDLKPQNILVTSSGQIKLADFGL----ARIYSFQMALTSVV 180
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 333 ILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAM-LASIV 375
++H D P N+ TSSGQI DFGL R + F M L S+V
Sbjct: 141 VVHRDLKPQNILVTSSGQIKLADFGL----ARIYSFQMALTSVV 180
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 333 ILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAM-LASIV 375
++H D P N+ TSSGQI DFGL R + F M L S+V
Sbjct: 141 VVHRDLKPQNILVTSSGQIKLADFGL----ARIYSFQMALTSVV 180
>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With
Sb203580
Length = 362
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 328 LLETGILHADPHPGNLRYTSSGQIGFLDFGL 358
L E G++H D HPGN+ + I DF L
Sbjct: 150 LHEAGVVHRDLHPGNILLADNNDITICDFNL 180
>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs
Resolution)
Length = 362
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 328 LLETGILHADPHPGNLRYTSSGQIGFLDFGL 358
L E G++H D HPGN+ + I DF L
Sbjct: 150 LHEAGVVHRDLHPGNILLADNNDITICDFNL 180
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 331 TGILHADPHPGNLRYTSSGQIGFLDFGL 358
GI+H D PGNL ++ LDFGL
Sbjct: 147 AGIIHRDLKPGNLAVNEDCELKILDFGL 174
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 16/70 (22%)
Query: 301 HLDRQKLDAKWRLLDLVNKGVEAT-----LVQLL-------ETGILHADPHPGNLRYTSS 348
HLD+ D K +LLD+ G+E+ L+QLL + +LH D P NL
Sbjct: 81 HLDQ---DLK-KLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINRE 136
Query: 349 GQIGFLDFGL 358
G++ DFGL
Sbjct: 137 GELKIADFGL 146
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 16/70 (22%)
Query: 301 HLDRQKLDAKWRLLDLVNKGVEAT-----LVQLL-------ETGILHADPHPGNLRYTSS 348
HLD+ D K +LLD+ G+E+ L+QLL + +LH D P NL
Sbjct: 81 HLDQ---DLK-KLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINRE 136
Query: 349 GQIGFLDFGL 358
G++ DFGL
Sbjct: 137 GELKIADFGL 146
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 16/70 (22%)
Query: 301 HLDRQKLDAKWRLLDLVNKGVEAT-----LVQLL-------ETGILHADPHPGNLRYTSS 348
HLD+ D K +LLD+ G+E+ L+QLL + +LH D P NL
Sbjct: 81 HLDQ---DLK-KLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINRE 136
Query: 349 GQIGFLDFGL 358
G++ DFGL
Sbjct: 137 GELKIADFGL 146
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 158 SFISEEPVAAASFGQVYRGSTLDGSIVAVK 187
+F ++ + FG+VY+G DG++VAVK
Sbjct: 39 NFSNKNILGRGGFGKVYKGRLADGTLVAVK 68
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 331 TGILHADPHPGNLRYTSSGQIGFLDFGL 358
G++H D PGNL ++ LDFGL
Sbjct: 145 AGVVHRDLKPGNLAVNEDCELKILDFGL 172
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 331 TGILHADPHPGNLRYTSSGQIGFLDFGL 358
G++H D PGNL ++ LDFGL
Sbjct: 163 AGVVHRDLKPGNLAVNEDCELKILDFGL 190
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 312 RLLDLVNKGVEATLVQLLET-GILHADPHPGNLRYTSSGQIGFLDFGLLCRM 362
R+L + + L L E G++H D P N+ GQI DFG+ R+
Sbjct: 124 RILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRL 175
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 158 SFISEEPVAAASFGQVYRGSTLDGSIVAVK 187
+F ++ + FG+VY+G DG +VAVK
Sbjct: 31 NFXNKNILGRGGFGKVYKGRLADGXLVAVK 60
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 314 LDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQ 367
+ +V K L L + I+H D GN+ +T G I DFG+ + R Q
Sbjct: 137 IQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQ 190
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 314 LDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQ 367
+ +V K L L + I+H D GN+ +T G I DFG+ + R Q
Sbjct: 137 IQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQ 190
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 314 LDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQ 367
+ +V K L L + I+H D GN+ +T G I DFG+ + R Q
Sbjct: 137 IQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ 190
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 305 QKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMER 364
Q+ D WRL + + L + GI+H D P N+ S + DFGL + R
Sbjct: 113 QQRDEYWRLF----RQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHR 168
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 118 IGSDISKALSELHDQIP-----PFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQ 172
+GS SKA + ++D + PF S + +++ E E+ +F + + FG+
Sbjct: 1 MGSKYSKATNSINDALSSSYLVPF-ESYRVPLVDLE-----EATNNFDHKFLIGHGVFGK 54
Query: 173 VYRGSTLDGSIVAVKVQRP 191
VY+G DG+ VA+K + P
Sbjct: 55 VYKGVLRDGAKVALKRRTP 73
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 118 IGSDISKALSELHDQIP-----PFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQ 172
+GS SKA + ++D + PF S + +++ E E+ +F + + FG+
Sbjct: 1 MGSKYSKATNSINDALSSSYLVPF-ESYRVPLVDLE-----EATNNFDHKFLIGHGVFGK 54
Query: 173 VYRGSTLDGSIVAVKVQRP 191
VY+G DG+ VA+K + P
Sbjct: 55 VYKGVLRDGAKVALKRRTP 73
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 314 LDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMER 364
+ +V K L L + I+H D GN+ +T G I DFG+ + R
Sbjct: 110 IQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR 160
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 305 QKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMER 364
Q+ D WRL + + L + GI+H D P N+ S + DFGL + R
Sbjct: 113 QQRDEYWRLF----RQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHR 168
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 332 GILHADPHPGNLRYTSSGQIGFLDFGLLCRMERK 365
G +H D P N+ SG + DFG +M ++
Sbjct: 188 GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE 221
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 332 GILHADPHPGNLRYTSSGQIGFLDFGLLCRMERK 365
G +H D P N+ SG + DFG +M ++
Sbjct: 193 GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE 226
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 332 GILHADPHPGNLRYTSSGQIGFLDFGLLCRMERK 365
G +H D P N+ SG + DFG +M ++
Sbjct: 193 GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKE 226
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 333 ILHADPHPGNLRYTSSGQIGFLDFGLLCRM--ERKHQFAMLASIV---------HIVNGD 381
I+H D P N+ S G+I DFG+ ++ E ++F S + + V D
Sbjct: 129 IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMANEFVGTRSYMSPERLQGTHYSVQSD 188
Query: 382 WQSLVHSLTEMDVVR 396
S+ SL EM V R
Sbjct: 189 IWSMGLSLVEMAVGR 203
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 327 QLLETGILHADPHPGNLRYTSSGQIGFLDFGL 358
L GI+H D P N+ S + LDFGL
Sbjct: 141 HLHSAGIIHRDLKPSNIVVKSDATLKILDFGL 172
>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map
Kinase Jnk1
Length = 370
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 327 QLLETGILHADPHPGNLRYTSSGQIGFLDFGL 358
L GI+H D P N+ S + LDFGL
Sbjct: 141 HLHSAGIIHRDLKPSNIVVKSDATLKILDFGL 172
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 327 QLLETGILHADPHPGNLRYTSSGQIGFLDFGL 358
L GI+H D P N+ S + LDFGL
Sbjct: 141 HLHSAGIIHRDLKPSNIVVKSDATLKILDFGL 172
>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 327 QLLETGILHADPHPGNLRYTSSGQIGFLDFGL 358
L GI+H D P N+ S + LDFGL
Sbjct: 141 HLHSAGIIHRDLKPSNIVVKSDATLKILDFGL 172
>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map
Kinase Jnk1
Length = 370
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 327 QLLETGILHADPHPGNLRYTSSGQIGFLDFGL 358
L GI+H D P N+ S + LDFGL
Sbjct: 141 HLHSAGIIHRDLKPSNIVVKSDATLKILDFGL 172
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 123 SKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRG-STLDG 181
SK S L IP P +I+ + G+ V SF++ E + FGQV++ T G
Sbjct: 56 SKRTSALAVDIPAPPAPFDHRIVTAKQGA-VNSFYTVSKTEILGGGRFGQVHKCEETATG 114
Query: 182 SIVAVKV 188
+A K+
Sbjct: 115 LKLAAKI 121
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 323 ATLVQLLET-GILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQ 367
A V+ L + G++H D P N+ +T + DFGL+ M++ +
Sbjct: 174 AEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEE 219
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 79 DFDGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFP 137
D +G++ ++ G + K LN ++IKV +L + ++ K + E+ DQI P
Sbjct: 191 DREGSVKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQP 249
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 79 DFDGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFP 137
D +G++ ++ G + K LN ++IKV +L + ++ K + E+ DQI P
Sbjct: 191 DREGSVKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEEILDQISSQP 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,463,749
Number of Sequences: 62578
Number of extensions: 502616
Number of successful extensions: 1704
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 48
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)