BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013944
(433 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 248 bits (632), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 220/388 (56%), Gaps = 32/388 (8%)
Query: 29 YNPQDVADYFNCRPHIVGLRLLEVGSCFLSAVIRIRTSRIRKFLRSDLEKDFDGNISQYN 88
Y+P + +++ RP V RL+ + L ++ I ++R D +S+
Sbjct: 53 YHPDLIMEFYRKRPLQVLGRLINILFPLLRFILGIWWEKLR---------GKDPTVSRAK 103
Query: 89 FGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEE 148
+ L+E + NLGPT+IKVGQ+LSTRPD++ L+ L DQ+P FP +A + IEEE
Sbjct: 104 -AIQLRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEE 162
Query: 149 LGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILR-IG 207
LG+P E ++ +S EP+AAAS GQVY+G G VAVKVQRP+L + DIYI+R +
Sbjct: 163 LGAPAEEIYAELSPEPIAAASLGQVYKGKLKTGEAVAVKVQRPDLVRRITLDIYIMRSLS 222
Query: 208 LGLLQKIAKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYL 267
L + + + +SDL DEL + E++Y EA N +F + + P I+VP ++
Sbjct: 223 LWARRSVKRLRSDLVAITDELASRVFEEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQY 282
Query: 268 SRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQ 327
+ +RVLTMEW+ G T++ ++ Q +DA LV GV+ +L Q
Sbjct: 283 TGRRVLTMEWVEGIKLTNIKAIQA-------------QGIDAT----HLVEVGVQCSLRQ 325
Query: 328 LLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVH 387
LLE G HADPHPGNL + G++ +LDFG++ ++ ++ ++ ++VH+VN D+ SL
Sbjct: 326 LLEHGFFHADPHPGNLLAMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAK 385
Query: 388 SLTEMDVVRPGTNTLRVTMDLEDALGEV 415
++D ++P T+ + ALG+V
Sbjct: 386 DYVKLDFLKPDTDLKPII----PALGQV 409
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 148/406 (36%), Positives = 210/406 (51%), Gaps = 47/406 (11%)
Query: 23 KPLP--------EVYNPQDVADYFNCRPHIVGLRLLEVGSCFLSAVIRIRTSRIRKFLRS 74
KPLP YN Q +A+Y+ RP V R LEV F FL
Sbjct: 5 KPLPPQSELDNIRRYNAQAIANYYRRRPWKVLWRALEVVWSF------------GFFLTC 52
Query: 75 DLEKDFDGNISQYNFGMI--LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQ 132
L + G + Y L+E + LGPTFIKVGQ+LSTRPD++ D + L +L DQ
Sbjct: 53 LLWDQWTGQVEYYKRQRAEDLRELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQ 112
Query: 133 IPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPN 192
+PPF +A +++EE+LG V+ + IS PVAAAS GQVYR G VAVKVQRPN
Sbjct: 113 LPPFDNDLAFQLMEEQLGMKVDEAYREISAHPVAAASLGQVYRAMLFSGEEVAVKVQRPN 172
Query: 193 LRHVVVRDIYILRIGLGLLQKIAK-----RKSDLRLYADELGKGLVGELDYTLEAANASE 247
LR + D+Y++R+G QK + DL L DE G L E+DY E NA +
Sbjct: 173 LRPRLSLDLYLMRLG---AQKFGRFLPLNLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEK 229
Query: 248 FQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKL 307
F E+ + VP ++ S ++VLT+EW+ G TD + + +D S
Sbjct: 230 FAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIR-AAGLDPS--------- 279
Query: 308 DAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQ 367
D++ GV + L QLLE G HADPHPGNL T G++ ++DFG++ ++E +
Sbjct: 280 -------DIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMDQLEPGTK 332
Query: 368 FAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALG 413
+ +SIV ++N D+ +L + + P T+ + LE+ G
Sbjct: 333 ETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFG 378
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 225 bits (574), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 185/340 (54%), Gaps = 21/340 (6%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + NLGP+FIK GQ L+ RPDII D L L D +PPFP +A IIEEELG P
Sbjct: 170 LRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQP 229
Query: 153 VESFFSFISEEPVAAASFGQVYRGS-TLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLL 211
+E+ FS IS + +AAAS GQVYR + G VA+KVQRP + ++ RD+++ R L
Sbjct: 230 LENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFL 289
Query: 212 QKIAKRK--SDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSR 269
+ +K + L DE G+ L+ ELDYTLEA N +F E+ P + +P V++ L
Sbjct: 290 NGFSLQKLGCNAELIVDEFGEKLLEELDYTLEARNIEDFLENFKDDPTVKIPGVYKNLCG 349
Query: 270 KRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLL 329
RVL MEW+ G TD ++ DA L + GV A L QLL
Sbjct: 350 PRVLVMEWIDGIRCTDPQAIK-----------------DAGIDLNGFLTVGVSAALRQLL 392
Query: 330 ETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSL 389
E G+ H DPHPGN+ G+I ++DFG + + ++++ ++ ++VH VN D+ + +
Sbjct: 393 EFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYGEMANDF 452
Query: 390 TEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
T + + T+ + LE A+ + G+ D F V
Sbjct: 453 TRLGFLAKDTDVSPIVPALE-AIWQNSAGKGLADFNFRSV 491
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 215 bits (547), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 203/386 (52%), Gaps = 31/386 (8%)
Query: 28 VYNPQDVADYFNCRPHIVGLRLLEVGSCFLSAVIRIRTSRIRKFLRSDLEKDFDGNISQY 87
+Y+P+ +A +P R LE+ +++ + + L +++K
Sbjct: 95 IYSPELIARKHGSQPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKR-------- 146
Query: 88 NFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEE 147
+ L+ LGPTF+K+GQ LSTRPD+ D + L+EL D +P FP + A IE
Sbjct: 147 --AIELRRIFTRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIER 204
Query: 148 ELGSPVESFFSFISEEPVAAASFGQVYRGS-TLDGSIVAVKVQRPNLRHVVVRDIYILRI 206
EL +E+ FS +S EP+AAAS GQVY+ G +VAVKVQRP + + D Y++R
Sbjct: 205 ELDLSLETIFSSVSPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIR- 263
Query: 207 GLGLL--QKIAKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVF 264
G+G L + + +D+ DE + EL+Y EA NA F++ ++ + VP +F
Sbjct: 264 GVGKLINKYVDFITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIF 323
Query: 265 RYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEAT 324
+ ++VLTMEW+ G + +++ + ++LDLVN G++ +
Sbjct: 324 WDYTSRKVLTMEWVEGTKLNEQLAIESQG-----------------LKVLDLVNTGIQCS 366
Query: 325 LVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQS 384
L QLLE G HADPHPGNL T G++ FLDFG++ + +FA++ +VH+VN D+++
Sbjct: 367 LRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEA 426
Query: 385 LVHSLTEMDVVRPGTNTLRVTMDLED 410
+ + + P + + L D
Sbjct: 427 MARDYYALKFLSPDVDVTPIIPALRD 452
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 207 bits (528), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 146/433 (33%), Positives = 219/433 (50%), Gaps = 48/433 (11%)
Query: 3 DLKALEAYANYFYHMLKIWSKPLPEVYNPQDVADYFNCRPHIVGLRLLEVGSCFLSAVIR 62
D+ + + + Y + + + L E YN + + +P I+ RL ++G+ F S
Sbjct: 44 DVDSFTSKSGYLFSLSADEADSLSE-YNFPRIDGMYKKKPLILLRRLAQIGTTF-SYWFG 101
Query: 63 IRTSRIRKFLRSDLEKDFDGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDI 122
+R + RSD + F ++ L++ ++ LGP ++K+ Q++S+RPD+I
Sbjct: 102 LRLAD-EALERSD--QMFKVRAAE------LRKLLVELGPAYVKIAQAVSSRPDLIPPIY 152
Query: 123 SKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGST-LDG 181
LS L DQI PF +A +IE+ELG P++ FS IS EPVAAAS GQVY+ G
Sbjct: 153 LDELSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSG 212
Query: 182 SIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYADELGKGLVGELDYTLE 241
+VAVKVQRP +R + D ILR GL++K + SDL DE L E+DY E
Sbjct: 213 KVVAVKVQRPGVRAAIALDTLILRYIAGLIKKAGRFNSDLEAVVDEWATSLFKEMDYLNE 272
Query: 242 AANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTH 301
A N +F++ + + VPK++ S +VL MEW+ G
Sbjct: 273 AQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEG--------------------- 311
Query: 302 LDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCR 361
QKL+ + L LV GV + QLLE G HADPHPGN T GQ+ +LDFG++
Sbjct: 312 ---QKLN-EVNDLYLVEVGVYCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGD 367
Query: 362 MERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGI 421
+ + + + +H+VN D+++L + ++ P VT L D F+D I
Sbjct: 368 FRPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKSAVTKALTDV-----FQDAI 422
Query: 422 PDVKFSR-VRSIS 433
SR VR+IS
Sbjct: 423 -----SRGVRNIS 430
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 166/323 (51%), Gaps = 33/323 (10%)
Query: 86 QYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKII 145
+Y L + +L LGPTFIK+GQSLSTR DII ++ +A ++L D++PPF A+ +I
Sbjct: 54 RYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVI 113
Query: 146 EEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILR 205
E+EL ++ F P+A+AS GQV+R G V VKVQRP L ++ D +L
Sbjct: 114 EQELHGAIDEIFQQFEVTPLASASLGQVHRAVLPTGEAVVVKVQRPGLDSLLNLDFELLH 173
Query: 206 IGLGLLQKIAKR----------KSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPF 255
L ++AKR K ++ E L E+DY E NA F+++ + +
Sbjct: 174 QTL----RLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADY 229
Query: 256 PFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLD 315
P + VP+++ + + VLT+E++ G VD DRQ L+ LD
Sbjct: 230 PRVRVPEIYWQYTTRMVLTLEYL------------PGIKVD------DRQALETAGINLD 271
Query: 316 LV-NKGVEATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASI 374
LV G+ A L QLL G +DPHPGN+ S G + F DFG + ++ + M+ +
Sbjct: 272 LVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTF 331
Query: 375 VHIVNGDWQSLVHSLTEMDVVRP 397
++ D ++ +L M +V P
Sbjct: 332 FAVLRKDTNQVLEALIYMGLVEP 354
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 164/339 (48%), Gaps = 20/339 (5%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP FIK GQ LSTRPD+I D + L++L D++PPF ++ + IE+ LG
Sbjct: 54 LRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQS 113
Query: 153 VESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQ 212
+E ++ EP+A+AS QV++ G VAVKV RPNL V+ +D+ ++R G G ++
Sbjct: 114 IEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPVIEQDLSLMRFGAGWVE 173
Query: 213 KIAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRK 270
++ L R E K L ELD EAANAS+ + + VPKVF
Sbjct: 174 RLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYDYCTS 233
Query: 271 RVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLE 330
VLT+EWM G +D+ L DG H L + GVE Q+
Sbjct: 234 DVLTIEWMDGTPVSDIAKLKA----DGIDLH-------------KLADYGVEIFFTQVFR 276
Query: 331 TGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLT 390
G HAD HPGN+ + + LDFG++ + + + + + N D++ + +
Sbjct: 277 DGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHI 336
Query: 391 EMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
E V T + + A+ E F I + F V
Sbjct: 337 ESGWVPADTRAEELEAAVR-AVCEPVFNKPISQISFGLV 374
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 161 bits (407), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 20/307 (6%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
++E +L+LGPTFIKVGQ STR D+ ++ + LS+L D++P F A IIEEELG P
Sbjct: 88 IRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKP 147
Query: 153 VESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQ 212
+ + P+AAAS GQV++ G V VKVQRP L+ + D+ IL+ Q
Sbjct: 148 IAKLYRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQ 207
Query: 213 KIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRK 270
K R D +E K L E DY E +A F+ + ++ VP+V+ +
Sbjct: 208 NHPKWGRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTST 267
Query: 271 RVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLE 330
++LT+E++ G I +S +++ + L+R+ +L G A L QLL
Sbjct: 268 QILTLEYLPG------IKISHYDALEAAG--LERK---------ELAQLGARAYLFQLLN 310
Query: 331 TGILHADPHPGNLRYT-SSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSL 389
G HADPHPGNL + +G++ F DFG++ + + ++ ++ + + + +V+SL
Sbjct: 311 HGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSL 370
Query: 390 TEMDVVR 396
+ ++
Sbjct: 371 VALGALK 377
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 164/340 (48%), Gaps = 22/340 (6%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP FIK GQ LSTRPD+I D + L++L D++PPF ++ + IE+ LG
Sbjct: 54 LRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQS 113
Query: 153 VESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQ 212
+E ++ EP+A+AS QV++ G VAVKV RPNL ++ +D+ ++R G ++
Sbjct: 114 IEKLYAEFETEPIASASIAQVHKARLHSGERVAVKVLRPNLLPLIEQDLSLMRFGAAWVE 173
Query: 213 KI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSR 269
++ +R L + A E K L ELD EAANA + + + VPKVF
Sbjct: 174 RLFSDGRRLKPLEVVA-EFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYDYCT 232
Query: 270 KRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLL 329
VLT+EWM G D+ L DG H L + GVE Q+
Sbjct: 233 SDVLTIEWMDGTPVADIAKLKA----DGIDLH-------------KLADYGVEIFFTQVF 275
Query: 330 ETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSL 389
G HAD HPGN+ + + LDFG++ + + + + + N D++ + +
Sbjct: 276 RDGFFHADMHPGNILVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAH 335
Query: 390 TEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
E V T + + A+ E F I + F V
Sbjct: 336 IESGWVPADTRAEELEAAVR-AVCEPVFNKPISQISFGLV 374
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 174/350 (49%), Gaps = 32/350 (9%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L+ L D++PPFP +A+K IEE+L
Sbjct: 57 GARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQL 116
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+ +E F+ EP+A+AS QV+ G V VKV RPNL V+ DI L I
Sbjct: 117 GAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILAR 176
Query: 210 LLQKI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
L +++ A+R + + +D K +V ELD EAANAS+ + + P ++VP+V+
Sbjct: 177 LAERVSSEARRLHPVEVVSD-YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
R +VL ME + G TDL +L Q+ D K L +GVE
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRD-------------QRTDFK----ALAERGVEIFFT 278
Query: 327 QLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ HAD HPGN+ R S Q +D G++ + + Q + +++ D+
Sbjct: 279 QVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDY 338
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE---FKDGIPDVKFSRV 429
+ + + V T D E A+ V F+ + D+ F +V
Sbjct: 339 RKVAQLHIDSGWVPAETK----VNDFEAAIRTVCEPIFEKPLKDISFGQV 384
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 174/350 (49%), Gaps = 32/350 (9%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L+ L D++PPFP +A+K IEE+L
Sbjct: 57 GARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQL 116
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+ +E F+ EP+A+AS QV+ G V VKV RPNL V+ DI L I
Sbjct: 117 GAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILAR 176
Query: 210 LLQKI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
L +++ A+R + + +D K +V ELD EAANAS+ + + P ++VP+V+
Sbjct: 177 LAERVSSEARRLHPVEVVSD-YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
R +VL ME + G TDL +L Q+ D K L +GVE
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRD-------------QRTDFK----ALAERGVEIFFT 278
Query: 327 QLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ HAD HPGN+ R S Q +D G++ + + Q + +++ D+
Sbjct: 279 QVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDY 338
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE---FKDGIPDVKFSRV 429
+ + + V T D E A+ V F+ + D+ F +V
Sbjct: 339 RKVAQLHIDSGWVPAETK----VNDFEAAIRTVCEPIFEKPLKDISFGQV 384
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 174/350 (49%), Gaps = 32/350 (9%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L+ L D++PPFP +A+K IEE+L
Sbjct: 57 GARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQL 116
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+ +E F+ EP+A+AS QV+ G V VKV RPNL V+ DI L I
Sbjct: 117 GAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILAR 176
Query: 210 LLQKI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
L +++ A+R + + +D K +V ELD EAANAS+ + + P ++VP+V+
Sbjct: 177 LAERVSSEARRLHPVEVVSD-YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
R +VL ME + G TDL +L Q+ D K L +GVE
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRD-------------QRTDFK----ALAERGVEIFFT 278
Query: 327 QLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ HAD HPGN+ R S Q +D G++ + + Q + +++ D+
Sbjct: 279 QVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDY 338
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE---FKDGIPDVKFSRV 429
+ + + V T D E A+ V F+ + D+ F +V
Sbjct: 339 RKVAQLHIDSGWVPAETK----VNDFEAAIRTVCEPIFEKPLKDISFGQV 384
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 174/350 (49%), Gaps = 32/350 (9%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L+ L D++PPFP +A+K IEE+L
Sbjct: 57 GARLRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQL 116
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+ +E F+ EP+A+AS QV+ G V VKV RPNL V+ DI L I
Sbjct: 117 GAKIEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILAR 176
Query: 210 LLQKI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
L +++ A+R + + +D K +V ELD EAANAS+ + + P ++VP+V+
Sbjct: 177 LAERVSSEARRLHPVEVVSD-YEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWD 235
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
R +VL ME + G TDL +L Q+ D K L +GVE
Sbjct: 236 WCRPKVLVMERIYGIPVTDLETLRD-------------QRTDFK----ALAERGVEIFFT 278
Query: 327 QLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ HAD HPGN+ R S Q +D G++ + + Q + +++ D+
Sbjct: 279 QVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDY 338
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE---FKDGIPDVKFSRV 429
+ + + V T D E A+ V F+ + D+ F +V
Sbjct: 339 RKVAQLHIDSGWVPAETK----VNDFEAAIRTVCEPIFEKPLKDISFGQV 384
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 157/308 (50%), Gaps = 31/308 (10%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L+ L DQ+PPFP A+ +IE +L
Sbjct: 56 GARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQL 115
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+PV F+ +P+A+AS QV+ G V VKV RP L+ V+ +D+ L
Sbjct: 116 GAPVSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKVVRPGLKPVIRQDL----AWLF 171
Query: 210 LLQKIAKRKS-DLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKV 263
LL +IA+R S D R + K + ELD EAANAS+ + + P ++VP+V
Sbjct: 172 LLARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQV 231
Query: 264 FRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEA 323
+ L R +VL ME + G TDL +L+ Q+ D K L +GVE
Sbjct: 232 YWDLCRHQVLVMERIYGVPVTDLATLAD-------------QRTDMKL----LAERGVEI 274
Query: 324 TLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVN 379
Q+ HAD HPGN+ R S Q +D G++ + + Q + +++
Sbjct: 275 FFTQVFRDSFFHADMHPGNIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFK 334
Query: 380 GDWQSLVH 387
D++ +
Sbjct: 335 RDYRKVAQ 342
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 145/282 (51%), Gaps = 23/282 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G+ L+ + LGP F+K GQ LSTR D+I DI+ L++L D++PPFP ++ + + L
Sbjct: 50 GVRLRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSL 109
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G P+E F+ +PVA+AS QV+ G DG VAVKV RPN+ +++ D+ +LR+
Sbjct: 110 GRPIEEVFASFDADPVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAAA 169
Query: 210 LLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYL 267
L++++ R+ R E L ELD EAANA++ + + I +P++ L
Sbjct: 170 WLERLSPDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIWDL 229
Query: 268 SRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQ 327
S VL ME M G P I + +D + L GV Q
Sbjct: 230 SSAEVLVMERMHG-VPISQIETLRAAGID----------------IPKLARDGVTIFFTQ 272
Query: 328 LLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERK 365
+ G HAD HPGN+ +++ G+ LDFG++ ++ +
Sbjct: 273 VFRDGFFHADMHPGNIMVSTAPATFGRYIALDFGIVGTLDSR 314
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 134/259 (51%), Gaps = 25/259 (9%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L L D++PPF +++K+IEE+L
Sbjct: 56 GARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQL 115
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G + FS EP+A+AS QV+ G V VKV RP L+ ++ +D+ L I
Sbjct: 116 GKKISEVFSRFDVEPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIAQDLAWLFI--- 172
Query: 210 LLQKIAKRKSDLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVF 264
L + K +D RL + K + ELD EAANAS+ + + P ++VP+V+
Sbjct: 173 LARAAEKVSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVY 232
Query: 265 RYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEAT 324
R +VL ME + G TDL +L+ Q+ D K L +GVE
Sbjct: 233 WDWCRPKVLVMERIYGIQVTDLATLAD-------------QRTDMK----MLAERGVEIF 275
Query: 325 LVQLLETGILHADPHPGNL 343
Q+ HAD HPGN+
Sbjct: 276 FTQVFRDSFFHADMHPGNI 294
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 161/313 (51%), Gaps = 31/313 (9%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
++ + G L+ + +LGP FIK GQ LSTR D++ +DI+ L L D++PPF A+ +
Sbjct: 52 TELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVAL 111
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IEE+LG+ V FS EP+A+AS QV+ G V VKV RP L+ V+ +D+
Sbjct: 112 IEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDL--- 168
Query: 205 RIGLGLLQKIAKRKS--DLRLYADEL----GKGLVGELDYTLEAANASEFQESHSPFPFI 258
L L+ K A+R S RL+ E+ K + ELD EAANAS+ + + +
Sbjct: 169 -AWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELM 227
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ L R +VL ME + G TD+++L+ Q+ D K L
Sbjct: 228 YVPQVYWDLCRPKVLVMERIYGVPVTDMVTLAD-------------QRTDMKL----LAE 270
Query: 319 KGVEATLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASI 374
+GVE Q+ HAD HPGN+ ++ S Q +D G++ + + Q + ++
Sbjct: 271 RGVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNL 330
Query: 375 VHIVNGDWQSLVH 387
+ D++ +
Sbjct: 331 IAFFKRDYRRVAQ 343
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 25/316 (7%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + LGP F+K GQ LSTR D++ D++++L +L D++PPFP A IIE+ LG+P
Sbjct: 55 LRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAP 114
Query: 153 VESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQ 212
V F+ S +P+A+AS QV+ + +G V VKV RP + V+ +D+ ++ + GLL+
Sbjct: 115 VSELFAEFSPDPMASASVAQVHAATLPNGQKVVVKVLRPGIEKVIRQDLGLMYLMAGLLE 174
Query: 213 KI---AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSR 269
K KR + + AD + ELD EAANAS+ + + P I++P + +R
Sbjct: 175 KYWSEGKRLHPVEVVAD-YDSTIHDELDLQREAANASQLRRNFENSPLIYIPFIDWDYTR 233
Query: 270 KRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLL 329
K VL ME + G D+ +L +K R+ L KGVE Q+
Sbjct: 234 KSVLVMERIHGIPIADVPAL---------------EKAGVNMRV--LAEKGVEIFFTQVF 276
Query: 330 ETGILHADPHPGNLRYTSSG----QIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSL 385
HAD HPGN+ S + +DFG++ + Q + +++ D++ +
Sbjct: 277 RDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQV 336
Query: 386 VHSLTEMDVVRPGTNT 401
+ V P T
Sbjct: 337 AQLHIQSGWVPPETRV 352
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 142 bits (357), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 157/308 (50%), Gaps = 31/308 (10%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ +DI+ L L D++PPF A+ +IEE+L
Sbjct: 57 GARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQL 116
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G+ V FS EP+A+AS QV+ G V VKV RP L+ V+ +D+ L
Sbjct: 117 GAKVGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKVVRPGLKPVIAQDL----AWLF 172
Query: 210 LLQKIAKRKS--DLRLYADEL----GKGLVGELDYTLEAANASEFQESHSPFPFIHVPKV 263
L+ K A+R S RL+ E+ K + ELD EAANAS+ + + ++VP+V
Sbjct: 173 LIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQV 232
Query: 264 FRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEA 323
+ L R +VL ME + G TD+ +L+ Q+ D K L +GVE
Sbjct: 233 YWDLCRPKVLVMERIYGVPVTDMATLAD-------------QRTDMK----MLAERGVEV 275
Query: 324 TLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASIVHIVN 379
Q+ HAD HPGN+ ++ S Q +D G++ + + Q + +++
Sbjct: 276 FFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFK 335
Query: 380 GDWQSLVH 387
D++ +
Sbjct: 336 RDYRRVAQ 343
>sp|Q4ZZG5|UBIB_PSEU2 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=ubiB PE=3 SV=1
Length = 539
Score = 141 bits (356), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 94/265 (35%), Positives = 141/265 (53%), Gaps = 27/265 (10%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
S+ + G+ + + +LGP FIK GQ LSTR D++ DI+ L L D++PPF + +A+K+
Sbjct: 51 SELSRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQLAIKL 110
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IEE+LG+ + FS E+P+A+AS QV+ G V VKV RP L+ ++ +D+ L
Sbjct: 111 IEEQLGARICDVFSRFDEKPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWL 170
Query: 205 RIGLGLLQKIAKRKS-DLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFI 258
I L ++A+R S D RL + K + ELD EAANAS+ + + +
Sbjct: 171 FI----LARMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANASQLRRNFEGSDLL 226
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ R +VL ME + G TD+ L+ Q+ D K L
Sbjct: 227 YVPQVYWDWCRPKVLVMERIYGLQVTDMAGLAD-------------QRTDMKL----LAE 269
Query: 319 KGVEATLVQLLETGILHADPHPGNL 343
+GVE Q+ HAD HPGN+
Sbjct: 270 RGVEIFFTQIFRDSFFHADMHPGNI 294
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 141 bits (356), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 135/260 (51%), Gaps = 27/260 (10%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L L D++PPF +MK+IEE+L
Sbjct: 56 GARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSMKLIEEQL 115
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G + FS +P+A+AS QV+ G V VKV RP L+ ++ +D+ L I
Sbjct: 116 GKKISEVFSRFDVDPLASASVAQVHAAQLKTGEEVVVKVIRPGLKPIIGQDLAWLFI--- 172
Query: 210 LLQKIAKR-KSDLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKV 263
L + A+R +D RL + K + ELD EAANAS+ + + P ++VP+V
Sbjct: 173 -LARAAERFSADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQV 231
Query: 264 FRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEA 323
+ R +VL ME + G TDL +L+ Q+ D K L +GVE
Sbjct: 232 YWDWCRPKVLVMERIYGVQVTDLATLAD-------------QRTDMKM----LAERGVEI 274
Query: 324 TLVQLLETGILHADPHPGNL 343
Q+ HAD HPGN+
Sbjct: 275 FFTQVFRDSFFHADMHPGNI 294
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 177/380 (46%), Gaps = 36/380 (9%)
Query: 62 RIRTSRIRKFLR-SDLEKDFDGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGS 120
R+ R+R LR + + + FD G+ L+ + +LGP F+K GQ LSTR D++
Sbjct: 25 RVNDRRVRLLLRITTIGRKFDAPP-----GVRLRLALESLGPIFVKFGQVLSTRRDLLPV 79
Query: 121 DISKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RG 176
DI+ L++L DQ+PPF ++A++++E LG+PV+ F PVA+AS QV+ +
Sbjct: 80 DIADELAKLQDQVPPFESAVAIRLVENALGAPVDVLFDDFERVPVASASIAQVHFATVKA 139
Query: 177 STLDGSIVAVKVQRPNLRHVVVRDIYILR---IGLGLLQKIAKRKSDLRLYADELGKGLV 233
G VAVKV RPN+ V+ D+ +LR + L KR + A E K L
Sbjct: 140 GQHAGKAVAVKVLRPNMLPVIDSDLALLRDIAVWAERLWADGKRLKPREVVA-EFDKYLH 198
Query: 234 GELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGS 293
ELD EAAN S+ + + + + VP+++ VL ME MVG P + +
Sbjct: 199 DELDLMREAANGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVG-VPISQVETLRAA 257
Query: 294 SVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----G 349
VD + L +GVE Q+ G HAD HPGN++ + G
Sbjct: 258 GVD----------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFG 301
Query: 350 QIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLE 409
+ LDFG++ + + + + + D+ + E V P T + +
Sbjct: 302 RYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPTTRVEELESAIR 361
Query: 410 DALGEVEFKDGIPDVKFSRV 429
A+ E F + D+ +V
Sbjct: 362 -AVCEPYFDRALKDISLGQV 380
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 172/350 (49%), Gaps = 32/350 (9%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ +LGP F+K GQ LSTRPD++ +DI L+ L D + PF + +I+E L
Sbjct: 49 GERLRRACEDLGPIFVKFGQLLSTRPDLVPADIVLELNHLQDNVTPFSKGEFQRIVESSL 108
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDI-YILRIGL 208
G+ V F+ + EP+A+AS QV+ DG V +KV RP + V+ +DI +LR+
Sbjct: 109 GASVAEVFASFNIEPLASASVAQVHTAVLKDGREVVIKVIRPGIDKVIAQDIALLLRVAR 168
Query: 209 GLLQKI--AKRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+ KR + + D + ELD EAAN S+ + + P ++VP+V+
Sbjct: 169 WVENNTLDGKRLHPVEIVED-YRTTIFDELDLQREAANGSQLRRNFLNSPLLYVPEVYWE 227
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
+R VL ME + G TDL +L+ Q+ D K L +GVE
Sbjct: 228 YTRTNVLVMERIYGIPVTDLAALNA-------------QQTDMK----KLAERGVEIFFT 270
Query: 327 QLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ E HAD HPGN+ + S+ Q +D ++ + R Q+ + +++ + D+
Sbjct: 271 QVFEHNFFHADMHPGNIFVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAMFRRDY 330
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE---FKDGIPDVKFSRV 429
+ + E V + +RV +LE A+ V F+ + ++ F++V
Sbjct: 331 RQVAELHVESGWV---PSHVRVE-ELEAAVRTVCEPIFEKPLKEISFAQV 376
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 158/313 (50%), Gaps = 31/313 (9%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
++ + G L+ + +LGP FIK GQ LSTR D++ DI+ L L D++PPF A+ +
Sbjct: 52 TELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVAL 111
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IEE+LG+ V FS EP+A+AS QV+ G V VKV RP L+ V+ +D+
Sbjct: 112 IEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDL--- 168
Query: 205 RIGLGLLQKIAKRKS--DLRLYADEL----GKGLVGELDYTLEAANASEFQESHSPFPFI 258
L L+ K A+R S RL+ E+ K + ELD EAANAS+ + + +
Sbjct: 169 -AWLFLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEDSELM 227
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ L R +VL ME + G TD+ +L+ Q+ D K L
Sbjct: 228 YVPQVYWDLCRPKVLVMERIYGVPVTDMATLAD-------------QRTDMKL----LAE 270
Query: 319 KGVEATLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASI 374
+GVE Q+ HAD HPGN+ ++ S Q +D G++ + + Q + ++
Sbjct: 271 RGVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNL 330
Query: 375 VHIVNGDWQSLVH 387
D++ +
Sbjct: 331 FAFFKRDYRRVAQ 343
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 177/380 (46%), Gaps = 36/380 (9%)
Query: 62 RIRTSRIRKFLR-SDLEKDFDGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGS 120
R+ R+R LR + + + FD G+ L+ + +LGP F+K GQ LSTR D++
Sbjct: 25 RVNDRRVRLLLRITTIGRKFDAPP-----GVRLRLALESLGPIFVKFGQVLSTRRDLLPV 79
Query: 121 DISKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVY----RG 176
DI+ L++L DQ+PPF ++A+ ++E+ LG+PV+ F PVA+AS QV+ +
Sbjct: 80 DIANELAKLQDQVPPFDSAVAIGLVEKSLGAPVDVLFDDFERVPVASASIAQVHFATVKA 139
Query: 177 STLDGSIVAVKVQRPNLRHVVVRDIYILR---IGLGLLQKIAKRKSDLRLYADELGKGLV 233
G VAVKV RPN+ V+ D+ +LR + L KR + A E K L
Sbjct: 140 GQHAGKAVAVKVLRPNMLPVIDSDLALLRDIAVWAERLWADGKRLKPREVVA-EFDKYLH 198
Query: 234 GELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGS 293
ELD EAAN S+ + + + + VP+++ VL ME MVG P + +
Sbjct: 199 DELDLMREAANGSQLRRNFAGLDLLLVPEMYWEFCTPTVLVMERMVG-VPISQVETLRAA 257
Query: 294 SVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLRYTSS----G 349
VD + L +GVE Q+ G HAD HPGN++ + G
Sbjct: 258 GVD----------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFG 301
Query: 350 QIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRPGTNTLRVTMDLE 409
+ LDFG++ + + + + + D+ + E V P T + +
Sbjct: 302 RYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPTTRVEELESAIR 361
Query: 410 DALGEVEFKDGIPDVKFSRV 429
A+ E F + D+ +V
Sbjct: 362 -AVCEPYFDRALKDISLGQV 380
>sp|Q87UZ0|UBIB_PSESM Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=ubiB PE=3 SV=1
Length = 539
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 27/265 (10%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
S+ + G+ + + +LGP FIK GQ LSTR D++ DI+ L L D++PPF + +A+K+
Sbjct: 51 SELSRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAIKL 110
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IEE+LG+ + FS E P+A+AS QV+ G V VKV RP L+ ++ +D+ L
Sbjct: 111 IEEQLGARICDVFSRFDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPIIGQDLAWL 170
Query: 205 RIGLGLLQKIAKRKS-DLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFI 258
I L ++A+R S D RL + K + ELD EAAN+S+ + + +
Sbjct: 171 FI----LARMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLL 226
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ R +VL ME + G TD+ L+ Q+ D K L
Sbjct: 227 YVPQVYWDWCRPKVLVMERIYGLQVTDMAGLAD-------------QRTDMK----MLAE 269
Query: 319 KGVEATLVQLLETGILHADPHPGNL 343
+GVE Q+ HAD HPGN+
Sbjct: 270 RGVEIFFTQIFRDSFFHADMHPGNI 294
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 161/327 (49%), Gaps = 18/327 (5%)
Query: 92 ILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGS 151
+L + ++ LGP +IK+GQ LSTRPD++ AL+ L +PP P S +++ E
Sbjct: 45 VLTKILVELGPFYIKLGQLLSTRPDLLPPRYINALTALQSNVPPLPWSAIEDLLQREFPQ 104
Query: 152 PVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLL 211
P+ F I EP+AA S GQ++R G VA+KV+RP + +V +D +++ LL
Sbjct: 105 PLGETFQEIESEPIAAGSIGQIHRAVLQSGETVAIKVKRPGIDVIVEQDSLLIKDVAELL 164
Query: 212 QKIA-KRKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIH-----VPKVFR 265
+ D+ ADE + + EL++ EAA + + + + + +PKV+
Sbjct: 165 ALTEFGQNYDIVKLADEFTQTVKAELNFDTEAAYTNNLRTNLAKTTWFDPNQLVIPKVYW 224
Query: 266 YLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATL 325
L+ ++ L +EW+ G + + T S D+ + K + L+ + A
Sbjct: 225 ELTNQKFLVLEWLDG------VPILTADLTQPPS---DKDIAEKKKEITTLLFR---AFF 272
Query: 326 VQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSL 385
QL G HADPHPGN+ Y + G++ +D G++ R++ + + + ++ IV+ D +
Sbjct: 273 QQLYVDGFFHADPHPGNIFYLADGRLALIDCGMVGRLDPRTRQLLTEMLLAIVDLDAKRC 332
Query: 386 VHSLTEMDVVRPGTNTLRVTMDLEDAL 412
E+ N R+ +D E L
Sbjct: 333 AQLTVELSESVGRVNFQRLEVDYERML 359
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 135/260 (51%), Gaps = 20/260 (7%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP FIK GQ LSTR D++ DI+ L+ L D++PPF ++ +IEE+LG+
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGAR 119
Query: 153 VESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQ 212
V+ F+ EP+A+AS QV+ G V VKV RP L+ V+ +D+ L + L +
Sbjct: 120 VDEAFARFDSEPLASASVAQVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAE 179
Query: 213 KIAKRKSDLRL--YADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRK 270
+ + L L + K + ELD EAANAS+ + + P ++VP+++ R
Sbjct: 180 RASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYWDWCRP 239
Query: 271 RVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLE 330
+VL ME + G TDL +L G+ L L +GVE Q+
Sbjct: 240 KVLVMERIYGVPVTDLAALVD----QGTDLKL-------------LAERGVEIFFTQVFR 282
Query: 331 TGILHADPHPGNLRYTSSGQ 350
HAD HPGN+ + S+ Q
Sbjct: 283 DSFFHADMHPGNI-FVSTRQ 301
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 109/319 (34%), Positives = 158/319 (49%), Gaps = 53/319 (16%)
Query: 62 RIRTSRIRKFLR-SDLEKDFDGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGS 120
R+ R+R LR + + + FD G+ L+ + +LGP F+K GQ LSTR D++
Sbjct: 25 RVNDRRVRLLLRITTIGRKFDQPP-----GVRLRLALESLGPIFVKFGQVLSTRRDLLRP 79
Query: 121 DISKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLD 180
DI+ L++L DQ+PPF ++A+ IIE+ LG+PV++ F PVA+AS QV+ +TL
Sbjct: 80 DIATELAKLQDQVPPFDSAVAIAIIEKSLGAPVDTIFDDFERVPVASASIAQVH-FATLK 138
Query: 181 -----GSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDLRLYAD--------- 226
G VAVKV RPN+ V+ D L LL+ IA RL+AD
Sbjct: 139 IGQHAGKQVAVKVLRPNMLPVIDSD-------LALLRDIAVWAE--RLWADGKRLKPREV 189
Query: 227 --ELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPT 284
E K L ELD EAAN S+ + + + + VP+++ VL ME MVG P
Sbjct: 190 VAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWEYCTANVLVMERMVG-VPI 248
Query: 285 DLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNLR 344
+ + VD + L +GVE Q+ G HAD HPGN++
Sbjct: 249 SQVDTLRVAGVD----------------IPKLAREGVEIFFTQVFRDGFFHADMHPGNIQ 292
Query: 345 YTSS----GQIGFLDFGLL 359
+ G+ LDFG++
Sbjct: 293 VSLDPAHFGRYIALDFGII 311
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 145/300 (48%), Gaps = 24/300 (8%)
Query: 99 NLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFS 158
+LGP F+K GQ LSTR D++ + + L+ L D++PPF IA +++E LG VE F
Sbjct: 58 SLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFV 117
Query: 159 FISEEPVAAASFGQVYRGSTLD-----GSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQK 213
+PVA+AS QV++ G VAVKV RP + V+ +D+ ++R G ++K
Sbjct: 118 DFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEK 177
Query: 214 IAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKR 271
+ L R E K L ELD EAANAS+ + + + VP+VF S +
Sbjct: 178 LFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSRE 237
Query: 272 VLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLET 331
VLT+EWM G P I + VD L L GVE Q+
Sbjct: 238 VLTLEWMHG-IPVGQIERLREAGVD----------------LQKLSRFGVEIFFTQVFRH 280
Query: 332 GILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTE 391
G HAD HPGN+ + G+ LDFG++ + + + + + N D+ + + E
Sbjct: 281 GFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIE 340
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 159/313 (50%), Gaps = 31/313 (9%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
S+ + G L+ + +LGP FIK GQ LSTR D++ +DI+ L L D++PPF A+ +
Sbjct: 51 SELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPKQAVAL 110
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IE +LG+ V FS EP+A+AS QV+ G V VKV RP L+ V+ +D+
Sbjct: 111 IESQLGAKVGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDL--- 167
Query: 205 RIGLGLLQKIAKRKS--DLRLYADEL----GKGLVGELDYTLEAANASEFQESHSPFPFI 258
L L+ K A+R S RL+ E+ K + ELD EAANAS+ + + +
Sbjct: 168 -AWLFLIAKGAERASADARRLHPVEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELM 226
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ L R +VL ME + G TD+ +L+ Q+ D K L
Sbjct: 227 YVPQVYWDLCRPKVLVMERIYGVPVTDMATLAD-------------QRTDMKL----LAE 269
Query: 319 KGVEATLVQLLETGILHADPHPGNLRYTS----SGQIGFLDFGLLCRMERKHQFAMLASI 374
+GVE Q+ HAD HPGN+ ++ S Q +D G++ + + Q + ++
Sbjct: 270 RGVEVFFTQVFRHSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNL 329
Query: 375 VHIVNGDWQSLVH 387
+ D++ +
Sbjct: 330 IAFFKRDYRRVAE 342
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/265 (35%), Positives = 139/265 (52%), Gaps = 27/265 (10%)
Query: 85 SQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKI 144
S+ + G+ + + +LGP FIK GQ LSTR D++ DI+ L L D++PPF + +A+ +
Sbjct: 51 SELSRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDRVPPFDQQVAINL 110
Query: 145 IEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYIL 204
IEE+LG+ + FS E P+A+AS QV+ G V VKV RP L+ V+ +D+ L
Sbjct: 111 IEEQLGARICDVFSRFDETPLASASVAQVHAACLKTGEEVVVKVVRPGLKPVIGQDLAWL 170
Query: 205 RIGLGLLQKIAKRKS-DLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFI 258
I L ++A+R S D RL + K + ELD EAAN+S+ + + +
Sbjct: 171 FI----LARMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLL 226
Query: 259 HVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVN 318
+VP+V+ R +VL ME + G TD+ L+ Q+ D K L
Sbjct: 227 YVPQVYWDWCRPKVLVMERIYGLQVTDMAGLAD-------------QRTDMKL----LAE 269
Query: 319 KGVEATLVQLLETGILHADPHPGNL 343
+GVE Q+ HAD HPGN+
Sbjct: 270 RGVEIFFTQIFRDSFFHADMHPGNI 294
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 155/321 (48%), Gaps = 27/321 (8%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+E + LGP F+K GQ LSTR D++ DI+ L+ L D++PPFP ++A+ IE
Sbjct: 50 GQRLREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAF 109
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGS--TLDGSI--VAVKVQRPNLRHVVVRDIYILR 205
PV F E P+A+AS QV+ + T +G + VAVKV RP++R V+ +D+ ++
Sbjct: 110 RRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMA 169
Query: 206 IGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKV 263
+ G ++K++ L R E K L ELD EAANA++ + + + + +P++
Sbjct: 170 MMAGWVEKLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEM 229
Query: 264 FRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEA 323
F V+ ME M G P + + VD + L GV
Sbjct: 230 FWDFCHPEVIVMERMNG-VPIAQLDRLRAAGVD----------------IPKLARDGVTI 272
Query: 324 TLVQLLETGILHADPHPGNLRYT----SSGQIGFLDFGLLCRMERKHQFAMLASIVHIVN 379
Q+ G HAD HPGN++ + + G+ LDFG++ + + + + V
Sbjct: 273 FFTQVFRDGFFHADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFR 332
Query: 380 GDWQSLVHSLTEMDVVRPGTN 400
D++ + E V GT
Sbjct: 333 RDYKRVAELHLESGWVPEGTR 353
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 160/342 (46%), Gaps = 31/342 (9%)
Query: 68 IRKFLRSDLEKDF----DGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDIS 123
+ ++LR L K F I + + G L+ + LGP F+K GQ LSTR D++ DI
Sbjct: 28 VERWLR--LAKPFVPRISAEIVEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIG 85
Query: 124 KALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSI 183
L L D++ PF A IIE LG VES F+ P+A+AS QV+ + D
Sbjct: 86 DELVMLQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRA 145
Query: 184 VAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLE 241
V VKV RP++ H + DI +L+ L++ + R E+ L ELD E
Sbjct: 146 VVVKVLRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVAEIETTLAAELDLQRE 205
Query: 242 AANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTH 301
ANAS + I+VP+V + +RVLT+E M G P+D I+L S +D +
Sbjct: 206 GANASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYG-IPSDDIALLDASGIDRKA-- 262
Query: 302 LDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLD 355
L +KG+ Q+ HAD H GN+ S+ + LD
Sbjct: 263 --------------LSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLD 308
Query: 356 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRP 397
FG++ ++ +K Q+ + + + I + D++ + E + P
Sbjct: 309 FGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPP 350
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 160/342 (46%), Gaps = 31/342 (9%)
Query: 68 IRKFLRSDLEKDF----DGNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDIS 123
+ ++LR L K F I + + G L+ + LGP F+K GQ LSTR D++ DI
Sbjct: 28 VERWLR--LAKPFVPRISAEIVEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIG 85
Query: 124 KALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSI 183
L L D++ PF A IIE LG VES F+ P+A+AS QV+ + D
Sbjct: 86 DELVMLQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRA 145
Query: 184 VAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLE 241
V VKV RP++ H + DI +L+ L++ + R E+ L ELD E
Sbjct: 146 VVVKVLRPDIEHQISDDIALLKSLATLVEHTHPNADKIRPREIVAEIETTLAAELDLQRE 205
Query: 242 AANASEFQESHSPFPFIHVPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTH 301
ANAS + I+VP+V + +RVLT+E M G P+D I+L S +D +
Sbjct: 206 GANASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYG-IPSDDIALLDASGIDRKA-- 262
Query: 302 LDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLD 355
L +KG+ Q+ HAD H GN+ S+ + LD
Sbjct: 263 --------------LSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLD 308
Query: 356 FGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTEMDVVRP 397
FG++ ++ +K Q+ + + + I + D++ + E + P
Sbjct: 309 FGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPP 350
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 135/266 (50%), Gaps = 26/266 (9%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + +LGP FIK GQ LSTR D++ DI+ L L D++PPF ++ +IE +L
Sbjct: 56 GARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQL 115
Query: 150 GSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGLG 209
G + FS EP+A+AS QV+ G V VKV RP L+ ++ +D+ L I
Sbjct: 116 GKKISDVFSRFDIEPLASASVAQVHAAKLKTGEEVVVKVIRPGLKPIIAQDLAWLFI--- 172
Query: 210 LLQKIAKRKSDLRLY-----ADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVF 264
L + K +D RL + K + ELD EAANAS+ + + P ++VP+V+
Sbjct: 173 LARAAEKLSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVY 232
Query: 265 RYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEAT 324
R +VL ME + G TDL +L+ Q+ D K L +GVE
Sbjct: 233 WDWCRPKVLVMERIYGIQVTDLATLAD-------------QRTDMK----MLAERGVEIF 275
Query: 325 LVQLLETGILHADPHPGNLRYTSSGQ 350
Q+ HAD HPGN+ + S+ Q
Sbjct: 276 FTQVFRDSFFHADMHPGNI-FVSTVQ 300
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 135/280 (48%), Gaps = 27/280 (9%)
Query: 90 GMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEEL 149
G L+ + LGP F+K GQ LSTR D++ D++ L++L D++PPF IA I+E L
Sbjct: 50 GERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSL 109
Query: 150 GSPVESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILR 205
G P+ + F PVA+AS QV+ RG DG VAVKV RP + V+ D+ ++R
Sbjct: 110 GKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMR 169
Query: 206 IGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKV 263
++K+ L R E K L ELD EAANAS+ + + + + VP+V
Sbjct: 170 DVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSELLLVPEV 229
Query: 264 FRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEA 323
F V ME M G +S + G TH L GVE
Sbjct: 230 FWDWCTSEVFVMERMHGVR----VSHADELRAAGVDTH-------------KLARDGVEI 272
Query: 324 TLVQLLETGILHADPHPGNLRYT----SSGQIGFLDFGLL 359
Q+ G HAD HPGN+ + S G+ LDFG++
Sbjct: 273 FFTQVFRDGFFHADMHPGNILVSVAPESLGRYIALDFGIV 312
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 153/324 (47%), Gaps = 25/324 (7%)
Query: 82 GNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIA 141
I + + G L+ + LGP F+K GQ LSTR D++ DI L L D++ PF A
Sbjct: 44 AEIVEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTA 103
Query: 142 MKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDI 201
IIE LG VES F+ P+A+AS QV+ + DG V VKV RP++ H + DI
Sbjct: 104 RIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDGREVVVKVLRPDIEHQISDDI 163
Query: 202 YILRIGLGLLQKIAKRKSDLR--LYADELGKGLVGELDYTLEAANASEFQESHSPFPFIH 259
+L+ L++ +R E+ L ELD E ANAS + I+
Sbjct: 164 ALLKSLATLVEHTHPNADKIRPCEIVAEIETTLAAELDLQREGANASVLRRFWEASDDIY 223
Query: 260 VPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNK 319
VP+V + ++VLT+E M G P+D I+L S +D + L +K
Sbjct: 224 VPEVIWSHTAEQVLTLERMYG-IPSDDIALLDASGIDRKA----------------LSSK 266
Query: 320 GVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLDFGLLCRMERKHQFAMLAS 373
G+ Q+ HAD H GN+ S+ + LDFG++ ++ +K Q+ + +
Sbjct: 267 GIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAEN 326
Query: 374 IVHIVNGDWQSLVHSLTEMDVVRP 397
+ I + D++ + E + P
Sbjct: 327 FMAIFHKDYRRIAELHVEAGWIPP 350
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 166/338 (49%), Gaps = 27/338 (7%)
Query: 100 LGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSPVESFFSF 159
LGP FIK GQ LSTR D++ DI++ L+ L D++PPF A IEE LG PVE+ F
Sbjct: 64 LGPIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQAARLKIEESLGCPVETLFDD 123
Query: 160 ISEEPVAAASFGQVYRGS-TLDGSIVAVKVQRPNLRHVVVRDIYILRIGLGLLQKIAKRK 218
E P+A+AS QV+ G +G + +KV RP++ V+ D+ +++ L+ + +
Sbjct: 124 FDETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLARLVARFVPQS 183
Query: 219 SDLRL--YADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRYLSRKRVLTME 276
+ LR +E K ++ EL+ EAANA + + + + ++VP+VF R+ VL ME
Sbjct: 184 ARLRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSDALYVPEVFTEHCREHVLVME 243
Query: 277 WMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLVQLLETGILHA 336
+ G +D+ +L +G++ L L +GVE Q+ HA
Sbjct: 244 RIYGIPVSDIPALEA----NGTNMKL-------------LAERGVEVFFTQVFRDSFFHA 286
Query: 337 DPHPGNLRYT-----SSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDWQSLVHSLTE 391
D HPGN+ + + IG +D G++ + R+ + + + + N D++ + E
Sbjct: 287 DMHPGNIFVSYEHPDNPLWIG-IDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVE 345
Query: 392 MDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
V P T + L + F+ + ++ F V
Sbjct: 346 SGWVPPDTKVDEFEFAIRTVLEPI-FEKPLSEISFGHV 382
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 149/312 (47%), Gaps = 25/312 (8%)
Query: 82 GNISQYNFGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIA 141
I + + G L+ + LGP F+K GQ LSTR D++ DI L L D++ PF A
Sbjct: 44 AEIVEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTA 103
Query: 142 MKIIEEELGSPVESFFSFISEEPVAAASFGQVYRGSTLDGSIVAVKVQRPNLRHVVVRDI 201
IIE LG VES F+ P+A+AS QV+ + D V VKV RP++ H + DI
Sbjct: 104 RIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRREVVVKVLRPDIEHQISDDI 163
Query: 202 YILRIGLGLLQKIAKRKSDL--RLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIH 259
+L+ L++ + R E+ L ELD E ANAS + I+
Sbjct: 164 ALLKSLATLVEHTHPNADKIRPREIVAEIETTLAAELDLQREGANASVLRRFWEASDDIY 223
Query: 260 VPKVFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNK 319
VP+V + +RVLT+E M G P+D I+L S +D + L +K
Sbjct: 224 VPEVIWSHTAERVLTLERMYG-IPSDDIALLDASGIDRKA----------------LSSK 266
Query: 320 GVEATLVQLLETGILHADPHPGNL------RYTSSGQIGFLDFGLLCRMERKHQFAMLAS 373
G+ Q+ HAD H GN+ S+ + LDFG++ ++ +K Q+ + +
Sbjct: 267 GIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAEN 326
Query: 374 IVHIVNGDWQSL 385
+ I + D++ +
Sbjct: 327 FMAIFHKDYRRI 338
>sp|Q0I208|UBIB_HAES1 Probable ubiquinone biosynthesis protein UbiB OS=Haemophilus somnus
(strain 129Pt) GN=ubiB PE=3 SV=1
Length = 544
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 166/354 (46%), Gaps = 34/354 (9%)
Query: 89 FGMILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEE 148
FG+ L+ + LGP +IK+GQ LSTR D+ ++I+ L+ L D + F IA + IE+
Sbjct: 53 FGLCLRLALQELGPVWIKLGQMLSTRRDLFPAEIADELALLQDNVEAFSGKIARQQIEQA 112
Query: 149 LGSPVESFFSFISEEPVAAASFGQVYRGSTLDG----SIVAVKVQRPNLRHVVVRDIYIL 204
LGS +E++F+ E +A+AS QV+ G V +KV RPN++ + D+ +
Sbjct: 113 LGSSLENWFTDFDENALASASIAQVHTAKLKLGEEQEKEVVIKVLRPNIQPQIEADLSWM 172
Query: 205 RIGLGLLQKIAKRKSDLRLYA--DELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPK 262
GLL K+ + LR E K L ELD +E ANA + +E+ P +++PK
Sbjct: 173 YKLAGLLPKLFREGYRLRAVEVIQEYEKTLRDELDLRVEMANAIKLRENFLDSPMLYIPK 232
Query: 263 VFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVE 322
++ K V+ ME + G +D+ +L +G+ L L +GV+
Sbjct: 233 MYEAFCHKNVIVMERIYGIPVSDVETLQR----NGTDMKL-------------LAERGVQ 275
Query: 323 ATLVQLLETGILHADPHPGNL----RYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIV 378
Q+ HAD HPGN+ Y + Q +D G++ ++ + + S V
Sbjct: 276 VFFTQVFRDSFFHADMHPGNIFVNPHYPENPQYIGIDCGIVGKLNESDKRYLAESFVAFF 335
Query: 379 NGDWQSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE---FKDGIPDVKFSRV 429
N D++ + + TN D E A EV F + ++ F++V
Sbjct: 336 NRDYRRVAQMHVDAGWTPQDTN----IDDFEQAFREVCEPIFAKPLSEISFAQV 385
>sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200,
chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=1
SV=1
Length = 540
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 27/334 (8%)
Query: 91 MILKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELG 150
+ L++ +G T+IK+GQ +++ P + + K D+ PP P KI++EELG
Sbjct: 127 LYLRKLFERMGATYIKLGQFIASAPTLFPPEYVKEFQNCFDKAPPVPFEEIRKILQEELG 186
Query: 151 SPVESFFSFISEEPVAAASFGQVYRGSTLDGSI--VAVKVQRPNLRHVVVRD---IYILR 205
P+ES + ++ P+A+AS QV+ G+ L GS V +KV +P + +V D IY++
Sbjct: 187 RPIESVYEYVDPTPIASASIAQVH-GARLRGSQEDVVIKVLKPGIEDFLVADLNFIYVVS 245
Query: 206 IGLGLLQKIAKRKSDLRLYADELGKGLVGELDYTLEAANASEFQ---ESHSPFPFIHVPK 262
L R S + + D + + ++ E+D+ EA N F+ E+ P+
Sbjct: 246 RIFEFLSPEFSRTSLVGIVKD-IRESMLEEVDFNKEAQNIESFKRYLETMGLTGQATAPR 304
Query: 263 VFRYLSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVE 322
V++Y S +RVLTME + G TDL S+ + S +S L+ +N
Sbjct: 305 VYKYCSSRRVLTMERLYGVPLTDLDSIRSLVSSPENS-------------LITALN---- 347
Query: 323 ATLVQLLETGILHADPHPGNLRYTSSGQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
LL HAD H GNL G+IGFLDFG++ R+ K AM + I ++
Sbjct: 348 VWFGSLLACESFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMEVFLASIATEEY 407
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVE 416
+S+ +L +M + DLE ++
Sbjct: 408 ESMASALIQMGATNRDVDGKAFAKDLEKMFSSIQ 441
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 28/347 (8%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
+ E V P T + + A+ E F + D+ +V
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQV 380
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 28/347 (8%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
+ E V P T + + A+ E F + D+ +V
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQV 380
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 28/347 (8%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
+ E V P T + + A+ E F + D+ +V
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQV 380
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 28/347 (8%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
+ E V P T + + A+ E F + D+ +V
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQV 380
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 28/347 (8%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
+ E V P T + + A+ E F + D+ +V
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQV 380
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 28/347 (8%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
+ E V P T + + A+ E F + D+ +V
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQV 380
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 28/347 (8%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
+ E V P T + + A+ E F + D+ +V
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQV 380
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 28/347 (8%)
Query: 93 LKETVLNLGPTFIKVGQSLSTRPDIIGSDISKALSELHDQIPPFPRSIAMKIIEEELGSP 152
L+ + +LGP F+K GQ LSTR D++ D + L++L DQ+PPF ++A+ I+E+ LG+
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 153 VESFFSFISEEPVAAASFGQVY----RGSTLDGSIVAVKVQRPNLRHVVVRDIYILRIGL 208
++ F PVA+AS QV+ + G VAVKV RPN+ V+ D+ ++R
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 209 GLLQKIAK--RKSDLRLYADELGKGLVGELDYTLEAANASEFQESHSPFPFIHVPKVFRY 266
+++ R+ R E K L ELD EAAN S+ + + + + VP++F
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMFWD 231
Query: 267 LSRKRVLTMEWMVGESPTDLISLSTGSSVDGSSTHLDRQKLDAKWRLLDLVNKGVEATLV 326
S VL ME M G P + + VD + L +GVE
Sbjct: 232 YSTPAVLVMERMTG-VPISQVDTLRAAGVD----------------IPKLAREGVEIFFT 274
Query: 327 QLLETGILHADPHPGNLRYTSS----GQIGFLDFGLLCRMERKHQFAMLASIVHIVNGDW 382
Q+ G HAD HPGN++ + G+ LDFG++ + + + + + D+
Sbjct: 275 QVFRDGFFHADMHPGNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334
Query: 383 QSLVHSLTEMDVVRPGTNTLRVTMDLEDALGEVEFKDGIPDVKFSRV 429
+ E V P T + + A+ E F + D+ +V
Sbjct: 335 HRVATLHLESGWVPPDTRVEELESAIR-AVCEPYFDRALKDISLGQV 380
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,680,364
Number of Sequences: 539616
Number of extensions: 6846792
Number of successful extensions: 19919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 19153
Number of HSP's gapped (non-prelim): 273
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)