BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013946
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 299 bits (766), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/390 (40%), Positives = 232/390 (59%), Gaps = 6/390 (1%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
+RVVVTG+G ++P+G + F+ L G SG+ I FD ++ P +IAAE+ ++
Sbjct: 2 RRVVVTGLGALTPIGVGQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEV-DVDPGAYL 60
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 141
K +R+D+F+ Y L A + AL D G+ + +LD + G L+G+G+GGM+ +
Sbjct: 61 DRKELRRLDRFVQYALIAAQLALEDAGLKPE---DLDPERVGTLVGTGIGGMETWEAQSR 117
Query: 142 A-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 200
L +++PF +P NM SA +AM G+ GP+ ++ TACAT + +A I
Sbjct: 118 VFLERGPNRISPFFIPMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQL 177
Query: 201 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 260
GEA+++L GG++AA+ P+ +G F RALS RN +P KASRP+ ++RDGFVM
Sbjct: 178 GEADLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLV 237
Query: 261 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 320
HAKKRGA+IYAE G ++DA+H+TEPHP+G G L + +AL +G++ E V Y
Sbjct: 238 LEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGY 297
Query: 321 INAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRT 379
INAH TSTP GD E A+ FG + + L V+STKSMIGHLL
Sbjct: 298 INAHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYH 357
Query: 380 GWIHPNINLENPDAVVDTNVLVGPKKERLE 409
G I P INLE+PD +D + + P++ +++
Sbjct: 358 GVIPPTINLEDPDPELDLDFVPEPREAKVD 387
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 155/390 (39%), Positives = 219/390 (56%), Gaps = 5/390 (1%)
Query: 18 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 77
++++KRVVVTG+G ++P+G+ ++ L+EG +GI I FD + + E+K F
Sbjct: 3 NLEKKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDA 62
Query: 78 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 137
++ K +KRMD+F + + A ++A+ D + V+NEL+ + GVLIG+G+GG+KV
Sbjct: 63 TQFLDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIGVLIGTGIGGLKVLE 119
Query: 138 DAIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 196
D L + +PF +P NM S + A++LG GPN TACA + I +A
Sbjct: 120 DQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFR 179
Query: 197 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXX 256
+ G A M+CGG++AA+ P+ GF + RALS RN+DP ASRP+D +RDGFVM
Sbjct: 180 LVQNGYAKAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGS 239
Query: 257 XXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRE 316
A RGAKIY E G + T DAYH+T P PDG G I AL SG+ E
Sbjct: 240 GILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPE 299
Query: 317 DVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLXXXXXXXXXXXXX 375
V+YINAH TSTPA D+ E +A+ G + + V+STKSM GHLL
Sbjct: 300 MVSYINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVM 359
Query: 376 XXRTGWIHPNINLENPDAVVDTNVLVGPKK 405
+ P INLENPD D + + G +
Sbjct: 360 AIAEDKVPPTINLENPDPECDLDYVPGQSR 389
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 217/383 (56%), Gaps = 6/383 (1%)
Query: 20 KQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG 79
+ KRVV+TGMG +SP+G++ + N L+GV+GI +I D + +A E+K+F+ +
Sbjct: 26 QNKRVVITGMGALSPIGNDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIED 85
Query: 80 WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDA 139
+ K ++RMD+F Y + A ++A+ D + +NE + GV IGSG+GGM+ F A
Sbjct: 86 HIDKKEARRMDRFTQYAIVAAREAVKDAQLD---INENTADRIGVWIGSGIGGMETFEIA 142
Query: 140 IEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
+ L ++++PF VP +M + +++DLG GPN + TACAT I A +
Sbjct: 143 HKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIV 202
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 258
RG+A+ M+ GG++A + + + GF A RALS N+D A RP+ RDGFVM
Sbjct: 203 QRGDADAMITGGTEAPITHMAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGI 261
Query: 259 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 318
A+ RGA IYAE G T DAYH+T P P+G G ++ A+ +G+ +DV
Sbjct: 262 LVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDV 321
Query: 319 NYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
Y+NAH TSTP GD+ E +A+ + FG+ + L+V+STKSM GHLL
Sbjct: 322 QYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSI 381
Query: 378 RTGWIHPNINLENPDAVVDTNVL 400
+ + P I+ PD D +++
Sbjct: 382 KDSKVAPTIHAVTPDPECDLDIV 404
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 252 bits (643), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/390 (38%), Positives = 219/390 (56%), Gaps = 5/390 (1%)
Query: 19 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 78
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 79 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 138
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 192
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 258
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 259 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 318
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ +
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 312
Query: 319 NYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
Y+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLL
Sbjct: 313 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILAL 372
Query: 378 RTGWIHPNINLENPDAVVDTNVLVGPKKER 407
R + P INL+NPD D + + P + R
Sbjct: 373 RDQAVPPTINLDNPDEGCDLDFV--PHEAR 400
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 218/388 (56%), Gaps = 5/388 (1%)
Query: 21 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 80
++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 2 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDI 61
Query: 81 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 140
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 62 ISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEENHT 119
Query: 141 EALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 200
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 120 SLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAY 179
Query: 201 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 260
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 180 GDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLV 239
Query: 261 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 320
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ + Y
Sbjct: 240 LEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGY 299
Query: 321 INAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXXRT 379
+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLL R
Sbjct: 300 VNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRD 359
Query: 380 GWIHPNINLENPDAVVDTNVLVGPKKER 407
+ P INL+NPD D + + P + R
Sbjct: 360 QAVPPTINLDNPDEGCDLDFV--PHEAR 385
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 212/393 (53%), Gaps = 11/393 (2%)
Query: 18 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 77
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 19 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 78
Query: 78 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 137
D + K + R D + LY L A ++A+ + + +N + + GV++ SG+GG+K
Sbjct: 79 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN---RDRFGVIVASGIGGIKEIE 135
Query: 138 DAIEALRISYK---KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 194
D + LR+ K ++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 136 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 193
Query: 195 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXX 254
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVM
Sbjct: 194 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGE 252
Query: 255 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVS 314
HA+KRGA I AE G T DAYHMT PHP+G G I I+ AL + +S
Sbjct: 253 GSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEIS 312
Query: 315 REDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXX 374
E V Y+NAH TSTPA + E A++ G+ + V+STKS GHLL
Sbjct: 313 PEQVAYVNAHGTSTPANEKGESGAIVAVLGKE--VPVSSTKSFTGHLLGAAGAVEAIVTI 370
Query: 375 XXXRTGWIHPNINLENPDAVVDTNVLVGPKKER 407
R ++ ++ NV+ G E+
Sbjct: 371 EAMRHNFVPMTAGTSEVSDYIEANVVYGQGLEK 403
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 218/390 (55%), Gaps = 5/390 (1%)
Query: 19 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 78
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 79 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 138
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
+ +K++PF VP NM + L + G GP+ SI+TAC + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATACTSGVHNIGHAARII 192
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 258
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 259 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 318
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ +
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 312
Query: 319 NYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
Y+NAH TSTPAGD E QA+ FG+ + V+ST SM GHLL
Sbjct: 313 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTASMTGHLLGAAGAVESIYSILAL 372
Query: 378 RTGWIHPNINLENPDAVVDTNVLVGPKKER 407
R + P INL+NPD D + + P + R
Sbjct: 373 RDQAVPPTINLDNPDEGCDLDFV--PHEAR 400
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 248 bits (634), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 218/390 (55%), Gaps = 5/390 (1%)
Query: 19 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 78
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 79 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 138
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
+ +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAATSGVHNIGHAARII 192
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 258
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 259 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 318
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ +
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 312
Query: 319 NYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
Y+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLL
Sbjct: 313 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILAL 372
Query: 378 RTGWIHPNINLENPDAVVDTNVLVGPKKER 407
R + P INL+NPD D + + P + R
Sbjct: 373 RDQAVPPTINLDNPDEGCDLDFV--PHEAR 400
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 247 bits (631), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 218/390 (55%), Gaps = 5/390 (1%)
Query: 19 MKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTD 78
+ ++RVVVTG+G++SP+G+ + + LL G SGIS I+ FD +++ TK A +K F+ +
Sbjct: 15 VSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCE 74
Query: 79 GWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYD 138
++ K ++MD F+ Y + AG +A+ D G+ ++ E + G + +
Sbjct: 75 DIISRKEQRKMDAFIQYGIVAGVQAMQDSGL--EITEENATRIGAAIGSGIGGLGLIEEN 132
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
+ +K++PF VP NM + L + G GP+ SI+TA + I +AA I
Sbjct: 133 HTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISIATAQTSGVHNIGHAARII 192
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXX 258
G+A+VM+ GG++ A P+G+GGF A RALS RN++P ASRPWD RDGFV+
Sbjct: 193 AYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAGM 252
Query: 259 XXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDV 318
HAKKRGAKIYAE G +SDAYHMT P +G G L + AL +G+ +
Sbjct: 253 LVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQI 312
Query: 319 NYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
Y+NAH TSTPAGD E QA+ FG+ + V+STKSM GHLL
Sbjct: 313 GYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSILAL 372
Query: 378 RTGWIHPNINLENPDAVVDTNVLVGPKKER 407
R + P INL+NPD D + + P + R
Sbjct: 373 RDQAVPPTINLDNPDEGCDLDFV--PHEAR 400
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/391 (38%), Positives = 211/391 (53%), Gaps = 11/391 (2%)
Query: 15 KKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS 74
+ HMK RVVVTG G+ SP+G+ P F+N+L G GI I FD + F AAEI+
Sbjct: 16 RGSHMKLNRVVVTGYGVTSPIGNTPAEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQD 75
Query: 75 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 134
F D + K + R D + LY L A ++A+ + DV L++ + GV++ SG+GG+K
Sbjct: 76 FPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANL--DVA-ALNRDRFGVIVASGIGGIK 132
Query: 135 VFYDAIEALRISYK---KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI 191
D + LR+ K ++ P +P A NM S +AM G G SI+TAC++SN I
Sbjct: 133 EIEDQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAI 190
Query: 192 LNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFV 251
+A I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFV
Sbjct: 191 GDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFV 249
Query: 252 MXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHS 311
M HA+KRGA I AE G T DAYHMT PHP+G G I I+ AL +
Sbjct: 250 MGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEA 309
Query: 312 GVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXX 371
+S E V Y+NAH TSTPA + E A++ G + + V+STKS GHLL
Sbjct: 310 EISPEQVAYVNAHGTSTPANEKGESGAIVAVLG--KAVPVSSTKSFTGHLLGAAGAVEAI 367
Query: 372 XXXXXXRTGWIHPNINLENPDAVVDTNVLVG 402
R ++ ++ NV+ G
Sbjct: 368 VTIEAMRHNFVPMTAGTSEVSDYIEANVVYG 398
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 145/348 (41%), Positives = 200/348 (57%), Gaps = 11/348 (3%)
Query: 18 HMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST 77
HMK RVVVTG G+ SP+G+ P+ F+N+L G GI I FD + F AAEI+ F
Sbjct: 20 HMKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPF 79
Query: 78 DGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 137
D + K + R D + LY L A ++A+ + + +N + + GV++ SG+GG+K
Sbjct: 80 DKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALN---RDRFGVIVASGIGGIKEIE 136
Query: 138 DAIEALRISYK---KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 194
D + LR+ K ++ P +P A NM S +AM G G SI+TAC++SN I +A
Sbjct: 137 DQV--LRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDA 194
Query: 195 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXX 254
I G +VML GG++A++ P + GF A ALS DPT+AS P+D +R+GFVM
Sbjct: 195 FRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGE 253
Query: 255 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVS 314
HA+KRGA I AE G T DAYHMT PHP+G G I I+ AL + +S
Sbjct: 254 GSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEIS 313
Query: 315 REDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLL 362
E V Y+NA TSTPA + E A++ G+ + V+STKS GHLL
Sbjct: 314 PEQVAYVNAAGTSTPANEKGESGAIVAVLGKE--VPVSSTKSFTGHLL 359
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 220/388 (56%), Gaps = 6/388 (1%)
Query: 21 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 80
++RVVVTG+G V+P+G++ + + N +GV+G+++ + FP KIAAE+K F + +
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKIAAELKDFDVEKY 62
Query: 81 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 140
+ K +++ D+F Y + + + A+ D G+ V+++ + ++ GV IGSG+GG + F
Sbjct: 63 LEKKEARKXDRFTHYAIASAEXAVQDSGL---VIDDSNANRVGVWIGSGIGGXETFETQY 119
Query: 141 EA-LRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHII 199
E L +++++PF VP + GS +++ G G N + TACAT+ I +A I
Sbjct: 120 EIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVIE 179
Query: 200 RGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXX 259
RG+A+ + GG++A + L GF A +ALS N DP A RP+D +RDGF++
Sbjct: 180 RGDADAXITGGAEAPITKXSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAGIV 238
Query: 260 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 319
HAK RGAKIYAE G T DAYH+T P P+G G + A+ +G++ + V+
Sbjct: 239 ILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVD 298
Query: 320 YINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXR 378
YINAH TSTP D E QA+ FG++ + L ++STKS GH L R
Sbjct: 299 YINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSXTGHTLGASGGIEAIFALLTIR 358
Query: 379 TGWIHPNINLENPDAVVDTNVLVGPKKE 406
I P I+L+N D V D + + +E
Sbjct: 359 DNIIAPTIHLKNQDEVCDLDYVPNEARE 386
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/413 (35%), Positives = 215/413 (52%), Gaps = 18/413 (4%)
Query: 15 KKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS 74
+ P RVVVTG+G+VSPLG ++ + L+ G SG+ + K+ ++
Sbjct: 17 QGPGSMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQD 76
Query: 75 FSTD--GWVAPKLS------KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 126
+ D G P+ S ++MD+F+ + A +ALA+ G + E + + ++
Sbjct: 77 VAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVV 134
Query: 127 GSGLGGMKVFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 182
SG+GG F EA+RI ++++PF +PF +N+ + +++ + GP T
Sbjct: 135 ASGIGG---FPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVT 191
Query: 183 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASR 241
ACA S I +A I GEA+V+L GG++AA + LGGF A RALS + +P +ASR
Sbjct: 192 ACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASR 251
Query: 242 PWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVI 301
P+D +RDGFVM HA RGA+ AE G T+DAYHMT DG G +
Sbjct: 252 PFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAM 311
Query: 302 LCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHL 361
++ AL V+ E V+Y+NAHATSTP GD E +AL FG G ++STKS GHL
Sbjct: 312 RAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHL 371
Query: 362 LXXXXXXXXXXXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKERLEVKAAL 414
L R G + +NLE+PD D L+GP + V+ AL
Sbjct: 372 LGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIAL 424
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 146/413 (35%), Positives = 214/413 (51%), Gaps = 18/413 (4%)
Query: 15 KKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKS 74
+ P RVVVTG+G+VSPLG ++ + L+ G SG+ + K+ ++
Sbjct: 17 QGPGSMTLRVVVTGIGIVSPLGCGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQD 76
Query: 75 FSTD--GWVAPKLS------KRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLI 126
+ D G P+ S ++MD+F+ + A +ALA+ G + E + + ++
Sbjct: 77 VAEDPEGGFDPERSVPHKELRKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVV 134
Query: 127 GSGLGGMKVFYDAIEALRIS----YKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 182
SG+GG F EA+RI ++++PF +PF +N+ + +++ + GP T
Sbjct: 135 ASGIGG---FPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVT 191
Query: 183 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPTKASR 241
A A S I +A I GEA+V+L GG++AA + LGGF A RALS + +P +ASR
Sbjct: 192 AXAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASR 251
Query: 242 PWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVI 301
P+D +RDGFVM HA RGA+ AE G T+DAYHMT DG G +
Sbjct: 252 PFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAM 311
Query: 302 LCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHL 361
++ AL V+ E V+Y+NAHATSTP GD E +AL FG G ++STKS GHL
Sbjct: 312 RAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHL 371
Query: 362 LXXXXXXXXXXXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKERLEVKAAL 414
L R G + +NLE+PD D L+GP + V+ AL
Sbjct: 372 LGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAARHVPVEIAL 424
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 202/388 (52%), Gaps = 11/388 (2%)
Query: 21 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG- 79
+RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA + S +G
Sbjct: 20 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 79
Query: 80 -----WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 134
+V+ K M + + A + A+ D G +E D+ GV IG G+ ++
Sbjct: 80 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLE 137
Query: 135 VFYD-AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 193
V + A+ Y K++PF VP NM + +++ GPN+++STAC T + +
Sbjct: 138 VVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGD 197
Query: 194 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMX 253
+ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+ RDGFVM
Sbjct: 198 SFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMG 256
Query: 254 XXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGV 313
HA +R A+IYAE G + DA H+T P P+G G + C+ AL +GV
Sbjct: 257 EGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGV 316
Query: 314 SREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXX 372
E+++YINAHATSTP GD E +A+ H F + L V+STK GHLL
Sbjct: 317 QPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAF 376
Query: 373 XXXXXRTGWIHPNINLENPDAVVDTNVL 400
+ P +NL+ + D N +
Sbjct: 377 TTLACYYQKLPPTLNLDCSEPEFDLNYV 404
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 218/396 (55%), Gaps = 13/396 (3%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------S 74
+RVV+TG+GLVSPL + + LL G SG + F+ +IA I +
Sbjct: 10 RRVVITGLGLVSPLASGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGT 69
Query: 75 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 134
F+ D + PK +++D F++Y + A +AL D G + N+ D+ + GVLIGSG+GG++
Sbjct: 70 FNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPE--NDEDQVRTGVLIGSGIGGIE 127
Query: 135 VFYDAIEALR-ISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 193
+A LR ++++PF +P N+ S +++ GPN+S+ TACAT I +
Sbjct: 128 GIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGD 187
Query: 194 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS-QRNNDPTKASRPWDINRDGFVM 252
AA I G+A+VM+ GG+++ V I L GF AC+ALS +RN+DPT ASRP+D +RDGFVM
Sbjct: 188 AARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVM 247
Query: 253 XXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSG 312
HA RGAKIYAE G + DA+H+T P G G C+ AL +G
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAG 307
Query: 313 VSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXX 371
+ ++++YINAH TST A D E A+ G+ + ++STKS IGHLL
Sbjct: 308 IVPDEIDYINAHGTSTMA-DTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAV 366
Query: 372 XXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKER 407
R +NL+NP A +++ +ER
Sbjct: 367 FSTLAIRDNIAPATLNLDNPAAQTRIDLVPHKPRER 402
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/388 (34%), Positives = 201/388 (51%), Gaps = 11/388 (2%)
Query: 21 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDG- 79
+RVV+TG+GLV+PLG + ++ L+ G SGI + + S P +AA + S +G
Sbjct: 26 HRRVVITGIGLVTPLGVGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQ 85
Query: 80 -----WVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 134
+V+ K M + + A + A+ D G +E D+ GV IG G+ ++
Sbjct: 86 FNEQNFVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLE 143
Query: 135 VFYD-AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 193
V + A+ Y K++PF VP NM + +++ GPN+++STA T + +
Sbjct: 144 VVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGD 203
Query: 194 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMX 253
+ I G+A+VM+ GG+D+ + P+ L GF RALS N+DP A RP+ RDGFVM
Sbjct: 204 SFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMG 262
Query: 254 XXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGV 313
HA +R A+IYAE G + DA H+T P P+G G + C+ AL +GV
Sbjct: 263 EGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGV 322
Query: 314 SREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXX 372
E+++YINAHATSTP GD E +A+ H F + L V+STK GHLL
Sbjct: 323 QPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAF 382
Query: 373 XXXXXRTGWIHPNINLENPDAVVDTNVL 400
+ P +NL+ + D N +
Sbjct: 383 TTLACYYQKLPPTLNLDCSEPEFDLNYV 410
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 215/420 (51%), Gaps = 34/420 (8%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGI----------------SEIETFDCTSFP 65
+RVVVTG+G+V+PLG + + L++G GI +++ TFD S
Sbjct: 1 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLS-- 58
Query: 66 TKIAAEIKSFSTDGWVAPKL---SKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKC 122
+K+AA + S G L SK + F+ Y + A +AL D E +++
Sbjct: 59 SKVAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWLPTEEEEKERTGV 118
Query: 123 GVLIGSGLGGMKVFYDAIEALRI----SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNY 178
+ G D +EA ++ ++++PF +P NM S ++M G+ GPN+
Sbjct: 119 SIGGGI-----GSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNH 173
Query: 179 SISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQR-NNDPT 237
+ TACAT I +A I G+A+VM+ GG+++++ + + GF RALS + N+ P
Sbjct: 174 AAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQ 233
Query: 238 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 297
+ASRP+D +RDGFV+ HAK+RGAKIYAE G + DA+H+T+P DG
Sbjct: 234 EASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDG 293
Query: 298 VGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR---GLRVNST 354
G +L + +AL SG+ ++Y+NAHATSTP GD E +A+ F ++ L +ST
Sbjct: 294 KGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSST 353
Query: 355 KSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKERLEVKAAL 414
K GHLL G +N++NPD + D + +++ V+ A+
Sbjct: 354 KGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAM 413
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 211/398 (53%), Gaps = 19/398 (4%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIK-------S 74
+RVV+TG+GLVSPL + + + LLEG SG+ I FD + +IAA I +
Sbjct: 6 RRVVITGLGLVSPLAGDVEYSWKRLLEGKSGVRRITEFDVSDLSCQIAARIPVGDGTNGT 65
Query: 75 FSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK 134
++ D + K +++D F++Y + A +ALA + + D+ + + G G
Sbjct: 66 YNADLHMESKEQRKVDAFIVYAIAAADQALA----DAEWFPKSDEDQICTGVLIGSGIGG 121
Query: 135 VFYDAIEALRISYK---KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCI 191
+ + K +++PF +P N+ S +++ G GPN+S+ TAC+T I
Sbjct: 122 IEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAI 181
Query: 192 LNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQ-RNNDPTKASRPWDINRDGF 250
+AA I G+A+VML GG+++ + I L GF ACRALS RN+DP +ASRP+D++RDGF
Sbjct: 182 GDAARLIALGDADVMLAGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGF 241
Query: 251 VMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAH 310
VM HAKKRGA+IYAE G + DAYH+T P G G + AL
Sbjct: 242 VMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMMAALKR 301
Query: 311 SGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLXXXXXXX 369
+ V+ +++YINAH TST A D+ E A+ G + ++STKS IGHLL
Sbjct: 302 AQVNVSELDYINAHGTSTMA-DVIELAAVERVLGYYAPQVSMSSTKSSIGHLLGAAGAAE 360
Query: 370 XXXXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKER 407
R +NLENP ++T + + P K R
Sbjct: 361 AIFCVLAIRDNIAPATLNLENPS--IETKIDLVPHKPR 396
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 191/375 (50%), Gaps = 15/375 (4%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 138
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 257
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 258 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 317
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 291
Query: 318 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
++Y+N+H TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 292 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 378 RTGWIHPNINLENPD 392
G+I P+IN+E D
Sbjct: 351 EHGFIAPSINIEELD 365
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 15/375 (4%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 138
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 257
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 258 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 317
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 291
Query: 318 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
++Y+N+H TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 292 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 378 RTGWIHPNINLENPD 392
G+I P+IN+E D
Sbjct: 351 EHGFIAPSINIEELD 365
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 177 bits (450), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 15/375 (4%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 138
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 257
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 258 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 317
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 303
Query: 318 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
++Y+N+H TSTP GD+KE A+ FG ++ +++T +M GH L
Sbjct: 304 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATAAMTGHSLGAAGVQEAIYSLLML 362
Query: 378 RTGWIHPNINLENPD 392
G+I P+IN+E D
Sbjct: 363 EHGFIAPSINIEELD 377
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 190/375 (50%), Gaps = 15/375 (4%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 138
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 177
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 257
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 258 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 317
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 291
Query: 318 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
++Y+N+H TSTP GD+KE A+ FG ++ +++T++M GH L
Sbjct: 292 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATRAMTGHSLGAAGVQEAIYSLLML 350
Query: 378 RTGWIHPNINLENPD 392
G+I P+IN+E D
Sbjct: 351 EHGFIAPSINIEELD 365
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 189/375 (50%), Gaps = 15/375 (4%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 138
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 257
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 258 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 317
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 303
Query: 318 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
++Y+N+ TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 304 IDYLNSQGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 362
Query: 378 RTGWIHPNINLENPD 392
G+I P+IN+E D
Sbjct: 363 EHGFIAPSINIEELD 377
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 189/375 (50%), Gaps = 15/375 (4%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 138
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
A+ R K + P+ V A + SA LA G NYSIS+ACATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVEQI 189
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 257
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 258 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 317
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 303
Query: 318 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
++Y+N+ TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 304 IDYLNSEGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 362
Query: 378 RTGWIHPNINLENPD 392
G+I P+IN+E D
Sbjct: 363 EHGFIAPSINIEELD 377
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 178/348 (51%), Gaps = 21/348 (6%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
+RVVVTGMG+VS +G + +L E SGIS E + F ++ + D +
Sbjct: 23 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHG-----APDIDI 77
Query: 82 APKLSKRMDKF----MLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFY 137
+ +R +F + A +A+AD G+TE+ E+ + G+++GSG +
Sbjct: 78 ESLVDRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIV 134
Query: 138 DAIEALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAAN 196
D+ + R K++ PF VP A ++ SA LA G NYSIS+ACATSN CI NA
Sbjct: 135 DSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYE 194
Query: 197 HIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXX 255
I G+ + M GG + + + F A A+S + ND P+ ASR +D NRDGFV+
Sbjct: 195 MIQYGKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGG 253
Query: 256 XXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSR 315
A RGAKIY E G TSD Y M P G G I C++ AL+
Sbjct: 254 AGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVA--PSGEGAIRCMKMALS---TVT 308
Query: 316 EDVNYINAHATSTPAGDIKEYQALIHCFGQNRGL-RVNSTKSMIGHLL 362
++YIN HATSTPAGD E +A+ FG + +TKS+ GH L
Sbjct: 309 SKIDYINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSL 356
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 125/344 (36%), Positives = 175/344 (50%), Gaps = 13/344 (3%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
+RVVVTGMG+VS +G + +L E SGIS E + F ++ + V
Sbjct: 6 RRVVVTGMGIVSSIGSNTEEVTASLREAKSGISRAEEYAELGFRCQVHGA-PDIDIESLV 64
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAIE 141
+ + + + A +A+AD G+TE+ E+ + G+++GSG + D+ +
Sbjct: 65 DRRAMRFHGRGTAWNHIAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSAD 121
Query: 142 ALRISY-KKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 200
R K++ PF VP A ++ SA LA G NYSIS+ACATSN CI NA I
Sbjct: 122 ITREKGPKRVGPFAVPKAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQY 181
Query: 201 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXX 259
G+ + M GG + + + F A A+S + ND P+ ASR +D NRDGFV+
Sbjct: 182 GKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVL 240
Query: 260 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 319
A RGAKIY E G TSD Y M P G G I C++ AL+ ++
Sbjct: 241 VLEDLETALARGAKIYGEIVGYGATSDGYDMVA--PSGEGAIRCMKMALS---TVTSKID 295
Query: 320 YINAHATSTPAGDIKEYQALIHCFGQNRGL-RVNSTKSMIGHLL 362
YIN HATSTPAGD E +A+ FG + +TKS+ GH L
Sbjct: 296 YINPHATSTPAGDAPEIEAIRQIFGAGDVCPPIAATKSLTGHSL 339
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 171 bits (432), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 186/374 (49%), Gaps = 17/374 (4%)
Query: 39 PDV--FYNNLLEGVSGISEIETFDCTSF--PTKIAAEIKSFSTDGWVAPKLSKRMD-KFM 93
PD+ + LL G SGI +E T + KI +K D + R+D + M
Sbjct: 27 PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMG-----RLDMRRM 80
Query: 94 LYLLTAGKKALADGGITEDVMN-ELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-YKKMN 151
Y+ GK L G + E + E+D + V++G+GLGG + ++ + + +K++
Sbjct: 81 SYVQRMGK--LLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVS 138
Query: 152 PFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 211
P V N +A++ + LG + +AC++ + I +A I+ G+A+V +CGG
Sbjct: 139 PLAVQMIMPNGAAAVIGLQLGARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGV 198
Query: 212 DAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRG 271
+ + + + F RA+S RN++P +ASRP+D +RDGFV HAK RG
Sbjct: 199 EGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARG 258
Query: 272 AKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAG 331
AK A G TSDA+HM P DGV + ++L +G+S D++++NAH T+TP G
Sbjct: 259 AKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIG 318
Query: 332 DIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENP 391
D E A I G ++ V + KS +GH + R G I P +N E P
Sbjct: 319 DAAEANA-IRVAGCDQAA-VYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETP 376
Query: 392 DAVVDTNVLVGPKK 405
D +D +V+ G +
Sbjct: 377 DPEIDLDVVAGEPR 390
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 178/395 (45%), Gaps = 11/395 (2%)
Query: 21 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 80
++RVV+TG+G+ +P G+ F+ L G + I FD + + +++AAE
Sbjct: 2 KRRVVITGVGVRAPGGNGTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEG 61
Query: 81 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMK------ 134
P+ RMD+ + + ++A A G+ D LD ++ GV +GS +
Sbjct: 62 FGPRELDRMDRASQFAVACAREAFAASGLDPDT---LDPARVGVSLGSAVAAATSLEREY 118
Query: 135 -VFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILN 193
+ D+ + ++ + ++ A +A +G GP +ST C + + N
Sbjct: 119 LLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGN 178
Query: 194 AANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMX 253
A I G A+VM G +D + PI + F A RA + RN+DP ASRP+D RDGFV+
Sbjct: 179 AVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVLA 238
Query: 254 XXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGV 313
A RGA+I+AE G + +AYHMT DG + I AL S
Sbjct: 239 EGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRT 298
Query: 314 SREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXX 372
D++YINAH + T D E A G++ R V+S KSM+GH L
Sbjct: 299 DATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAA 358
Query: 373 XXXXXRTGWIHPNINLENPDAVVDTNVLVGPKKER 407
G + P NL D D + + +ER
Sbjct: 359 CVLALEHGVVPPTANLRTSDPECDLDYVPLEARER 393
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 17/374 (4%)
Query: 39 PDV--FYNNLLEGVSGISEIETFDCTSF--PTKIAAEIKSFSTDGWVAPKLSKRMD-KFM 93
PD+ + LL G SGI +E T + KI +K D + R+D + M
Sbjct: 27 PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKD-PVDSHMG-----RLDMRRM 80
Query: 94 LYLLTAGKKALADGGITEDVMN-ELDKSKCGVLIGSGLGGMKVFYDAIEALRIS-YKKMN 151
Y+ GK L G + E + E+D + V++G+GLGG + ++ + + +K++
Sbjct: 81 SYVQRMGK--LLGGQLWESAGSPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVS 138
Query: 152 PFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGS 211
P V N +A++ + LG + +A ++ + I +A I+ G+A+V +CGG
Sbjct: 139 PLAVQMIMPNGAAAVIGLQLGARAGVMTPVSAQSSGSEAIAHAWRQIVMGDADVAVCGGV 198
Query: 212 DAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRG 271
+ + + + F RA+S RN++P +ASRP+D +RDGFV HAK RG
Sbjct: 199 EGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARG 258
Query: 272 AKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAG 331
AK A G TSDA+HM P DGV + ++L +G+S D++++NAH T+TP G
Sbjct: 259 AKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIG 318
Query: 332 DIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENP 391
D E A I G ++ V + KS +GH + R G I P +N E P
Sbjct: 319 DAAEANA-IRVAGCDQAA-VYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETP 376
Query: 392 DAVVDTNVLVGPKK 405
D +D +V+ G +
Sbjct: 377 DPEIDLDVVAGEPR 390
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 15/375 (4%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 14 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 72
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 138
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 73 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 130
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 131 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQI 189
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 257
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 190 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 248
Query: 258 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 317
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 249 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 303
Query: 318 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
++Y+N+H TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 304 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 362
Query: 378 RTGWIHPNINLENPD 392
G+I P+IN+E D
Sbjct: 363 EHGFIAPSINIEELD 377
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 190/375 (50%), Gaps = 15/375 (4%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
KRVV+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRVVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 138
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSAHCIGNAVEQI 177
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 257
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 258 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 317
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 291
Query: 318 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
++Y+N+H TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 292 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 378 RTGWIHPNINLENPD 392
G+I P+IN+E D
Sbjct: 351 EHGFIAPSINIEELD 365
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 127/375 (33%), Positives = 189/375 (50%), Gaps = 15/375 (4%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGWV 81
KR V+TG+G+VS +G+ +L EG SGI+ + + + + +K T G +
Sbjct: 2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVK-LDTTGLI 60
Query: 82 APKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG--MKVF-YD 138
K+ + M +Y + ++A+AD G++ + + + G++ GSG G +VF D
Sbjct: 61 DRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQ--NNPRVGLIAGSGGGSPRFQVFGAD 118
Query: 139 AIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHI 198
A+ R K + P+ V A + SA LA G NYSIS+A ATS CI NA I
Sbjct: 119 AMRGPR-GLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSAHCIGNAVEQI 177
Query: 199 IRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXX 257
G+ +++ GG + + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 178 QLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGG 236
Query: 258 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 317
HA RGA IYAE G TSD M P G G + C++ A+ GV
Sbjct: 237 MVVVEELEHALARGAHIYAEIVGYGATSDGADMVA--PSGEGAVRCMKMAM--HGVDTP- 291
Query: 318 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
++Y+N+H TSTP GD+KE A+ FG ++ +++TK+M GH L
Sbjct: 292 IDYLNSHGTSTPVGDVKELAAIREVFG-DKSPAISATKAMTGHSLGAAGVQEAIYSLLML 350
Query: 378 RTGWIHPNINLENPD 392
G+I P+IN+E D
Sbjct: 351 EHGFIAPSINIEELD 365
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 185/404 (45%), Gaps = 26/404 (6%)
Query: 11 VTTKKKPHMKQKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISE-----IETFDCTSFP 65
VT K P+ VVVTG+ + + L + + + LL+ SGI +E FD P
Sbjct: 22 VTGKAFPY-----VVVTGIAMTTALATDAETTWKLLLDRQSGIRTLDDPFVEEFD---LP 73
Query: 66 TKIAAEIKSFSTDGWVAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVL 125
+I + D + +RM ++ + G E +D ++ V
Sbjct: 74 VRIGGHLLE-EFDHQLTRIELRRMGYLQRMSTVLSRRLWENAGSPE-----VDTNRLMVS 127
Query: 126 IGSGLGGMK--VF-YDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 182
IG+GLG + VF YD + A K ++P V N +A + ++ + +
Sbjct: 128 IGTGLGSAEELVFSYDDMRAR--GMKAVSPLTVQKYMPNGAAAAVGLERHAKAGVMTPVS 185
Query: 183 ACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACR-ALSQRNNDPTKASR 241
ACA+ I A I+ GEA+ +CGG + + + + GF R +S N+DP A R
Sbjct: 186 ACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACR 245
Query: 242 PWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVI 301
P+D +RDGFV HAK RGA I A G S TSD +HM P P+G
Sbjct: 246 PFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAG 305
Query: 302 LCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHL 361
I +A+ +G++ D++++NAHAT T GD+ E +A+ + G NR V + KS +GH
Sbjct: 306 HAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNRPA-VYAPKSALGHS 364
Query: 362 LXXXXXXXXXXXXXXXRTGWIHPNINLENPDAVVDTNVLVGPKK 405
+ R I P +NL N D +D +V+ G +
Sbjct: 365 VGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAGEPR 408
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 175/373 (46%), Gaps = 10/373 (2%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFST-DGW 80
KR V+TG+G+VS +G+ +L EG SGI+ + F + + ++K S
Sbjct: 5 KRAVITGLGIVSSIGNNQQEVLASLQEGRSGITFAQEFKDAGXRSHVWGDVKLQSEPKDL 64
Query: 81 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 140
+ K+ + +Y A ++A+AD G+++ ++ G DA
Sbjct: 65 IDRKVLRFXSDASIYAYLAXQEAIADSGLSDSQVSNFRSGLVVGSGGGSPRNQVAGSDAX 124
Query: 141 EALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 200
R K + P+ V A + SA LA G NYSIS+ACATS CI +A I
Sbjct: 125 RTPR-GLKGVGPYXVTKAXASGVSACLATPFKIKGVNYSISSACATSAHCIGHALELIQL 183
Query: 201 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXX 259
G+ +++ GG + F A ALS + ND P KASR +D +RDGFV+
Sbjct: 184 GKQDIVFAGGGEELCWEXACE-FDAXGALSTKYNDTPAKASRTYDQDRDGFVIAGGGGXV 242
Query: 260 XXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVN 319
HA RGA IYAE G TSD P G G + C + A A GV ++
Sbjct: 243 VVEELEHALARGAHIYAEIVGYGATSDGADXVA--PSGEGAVRCXQXAXA--GVDTP-ID 297
Query: 320 YINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRT 379
Y N H TSTP GD+KE A+ FG N ++STK+ GH L
Sbjct: 298 YXNVHGTSTPVGDVKELGAIREVFGNNT-PAISSTKAXTGHSLGAAGVHEAIFSLLXVEH 356
Query: 380 GWIHPNINLENPD 392
G+I P+IN++N D
Sbjct: 357 GFIAPSINIDNLD 369
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 168/375 (44%), Gaps = 13/375 (3%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDC-TSFPTKIAAEIKSFSTDGW 80
KRVV+TGMG V+ LG D L G + + + +D S T++AA + F+
Sbjct: 6 KRVVITGMGGVTALGSRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPAD 65
Query: 81 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGG---MKVFY 137
K ++ M + +Y + A + ALAD G D + + GV GS G ++ F
Sbjct: 66 WPRKKTRSMGRVSMYAVRASELALADAGFAGD--ESISDGRMGVAYGSSSGSVEPIRAFG 123
Query: 138 DAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 197
+E+ ++ N + T + L DL G S+ACA+ + I A +
Sbjct: 124 TMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDL--KGRIVPTSSACASGSQAIGYAYEN 181
Query: 198 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 257
I G+ +ML GG++ P + F A S RN++P RP+D RDG V+
Sbjct: 182 IAMGKQTLMLAGGAEELSGP-AVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEGAA 240
Query: 258 XXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSRED 317
HAK RGA I+AE G SD HMT+P + ++ AL + +
Sbjct: 241 TLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQPTASTMA--RAMQLALEDAKLDANA 298
Query: 318 VNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXX 377
+ Y+NAH TST GD+ E QA FG+ + ++S KS +GH L
Sbjct: 299 IAYVNAHGTSTDRGDVAESQATARTFGER--MPISSLKSYVGHTLGACGALEAWWTIEMM 356
Query: 378 RTGWIHPNINLENPD 392
+ W P +NL D
Sbjct: 357 KRNWYAPTLNLTEVD 371
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 147/377 (38%), Gaps = 21/377 (5%)
Query: 21 QKRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIETFDCTSFPTKIAAEIKSFSTDGW 80
K V++TG+G+V+P G +++ +L+G G+ + FD + +P +A +I F
Sbjct: 8 DKSVLITGVGVVAPNGLGLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDH 67
Query: 81 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 140
+ +L + D LTA AL D + + + D GV+ + GG +
Sbjct: 68 IPGRLLPQTDPSTRLALTAADWALQDAKADPESLTDYD---MGVVTANACGGFDFTHREF 124
Query: 141 EALRISYKKMNPFCVPFA---TTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANH 197
L K FA N G +++ G GP+ ++ A L A
Sbjct: 125 RKLWSEGPKSVSVYESFAWFYAVNTG--QISIRHGMRGPSSAL-VAEQAGGLDALGHARR 181
Query: 198 IIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXX 257
IR +++ GG D+A+ P G +A +S DP +A P+D G+V
Sbjct: 182 TIRRGTPLVVSGGVDSALDPWGWVSQIASGRIST-ATDPDRAYLPFDERAAGYVPGEGGA 240
Query: 258 XXXXXXXXHAKKRGA-KIYAEFRGGSFTSDAYHMTEPHPDG---VGVILCIEKALAHSGV 313
A+ RG Y E G + T D P P G+ I AL +G
Sbjct: 241 ILVLEDSAAAEARGRHDAYGELAGCASTFD------PAPGSGRPAGLERAIRLALNDAGT 294
Query: 314 SREDVNYINAHATSTPAGDIKEYQALIHCFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXX 373
EDV+ + A P D E +A+ FG+ G+ V K+ G L
Sbjct: 295 GPEDVDVVFADGAGVPELDAAEARAIGRVFGRE-GVPVTVPKTTTGRLYSGGGPLDVVTA 353
Query: 374 XXXXRTGWIHPNINLEN 390
R G I P + +
Sbjct: 354 LMSLREGVIAPTAGVTS 370
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 125/320 (39%), Gaps = 19/320 (5%)
Query: 81 VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKVFYDAI 140
V+P+ + MD LL + + + GI + G G LG K Y
Sbjct: 84 VSPREAAAMDPQQRLLLETSWELVENAGIDPHSLR-------GTATGVFLGVAKFGYGED 136
Query: 141 EALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIR 200
A + + + + V + S ++ +G GP+ S+ TAC++S + A + +
Sbjct: 137 TA---AAEDVEGYSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRK 193
Query: 201 GEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXX 260
GE+++ + GG+ P F RAL+ S+ + DGF
Sbjct: 194 GESSMAVVGGAAVMATPGVFVDFSRQRALAADGR-----SKAFGAGADGFGFSEGVTLVL 248
Query: 261 XXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNY 320
A++ G ++ A RG + D P G I +AL G+ DV+
Sbjct: 249 LERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDA 308
Query: 321 INAHATSTPAGDIKEYQALIHCFGQNRG----LRVNSTKSMIGHLLXXXXXXXXXXXXXX 376
+ AH T T GD E AL+ +G++R L + S KS IGH
Sbjct: 309 VEAHGTGTALGDPIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLA 368
Query: 377 XRTGWIHPNINLENPDAVVD 396
R G + +++E P VD
Sbjct: 369 LRNGELPATLHVEEPTPHVD 388
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 85/205 (41%), Gaps = 9/205 (4%)
Query: 160 TNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIG 219
+++ S +A LG GP ++ TAC++ + A + R E + L GG P
Sbjct: 175 SSVASGRVAYCLGLEGPAXTVDTACSSGLTALHLAXESLRRDECGLALAGGVTVXSSP-- 232
Query: 220 LGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFR 279
G F R SQ +P+ DGF + A++ G + A R
Sbjct: 233 -GAFTEFR--SQGGLAADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLR 289
Query: 280 GGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQAL 339
G + D P G I +AL ++GV DV+Y+ AH T T GD E AL
Sbjct: 290 GSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHAL 349
Query: 340 IHCFGQNRG----LRVNSTKSMIGH 360
+ +G R L + S KS IGH
Sbjct: 350 LSTYGAERDPDDPLWIGSVKSNIGH 374
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 144/381 (37%), Gaps = 29/381 (7%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE---TFDCTSFPTKIAA--EIKSFS 76
+ VV+ GM P F++NL+ GV +++ + P + ++ F
Sbjct: 4 EEVVIAGMSGKLPESENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFD 63
Query: 77 TDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIG-SGLGGMK 134
+ V PK + MD + LL +A+ DGGI D L + GV +G SG
Sbjct: 64 ASFFGVHPKQAHTMDPQLRLLLEVTYEAIVDGGINPD---SLRGTHTGVWVGVSG----- 115
Query: 135 VFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNA 194
+ EAL + + + + M + L+ + GP+ ++ TAC++S + NA
Sbjct: 116 --SETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFRGPSIALDTACSSSLMALQNA 173
Query: 195 ANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXX 254
I G+ + GG + + P F+ LS P + +D +G+
Sbjct: 174 YQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS-----PEGTCKAFDTAGNGYCRSE 228
Query: 255 XXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAY-HMTEPHPDGVGVILCIEKALAHSGV 313
A+ ++YA +D + P G I +GV
Sbjct: 229 GVVAVLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGV 284
Query: 314 SREDVNYINAHATSTPAGDIKEYQALIH--CFGQNRGLRVNSTKSMIGHLLXXXXXXXXX 371
+ E YI AH T T GD +E + C + L + STKS +GH
Sbjct: 285 APESFEYIEAHGTGTKVGDPQELNGITRALCATRQEPLLIGSTKSNMGHPEPASGLAALA 344
Query: 372 XXXXXXRTGWIHPNINLENPD 392
G PN++ +P+
Sbjct: 345 KVLLSLEHGLWAPNLHFHSPN 365
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 142/379 (37%), Gaps = 25/379 (6%)
Query: 22 KRVVVTGMGLVSPLGHEPDVFYNNLLEGVSGISEIE---TFDCTSFPTKIAA--EIKSFS 76
+ VV+ GM P + F+ NL+ GV ++ + P ++ ++ F
Sbjct: 2 EEVVIAGMSGKLPESENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRFD 61
Query: 77 TDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGITEDVMNELDKSKCGVLIGSGLGGMKV 135
+ V K + MD + LL +A+ DGGI L + GV +G
Sbjct: 62 ASFFGVHSKQANTMDPQLRMLLEVTYEAIVDGGINP---ASLRGTSTGVWVGVSSS---- 114
Query: 136 FYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAA 195
DA EAL + + + + M + L+ + GP+ +I TAC++S + +A
Sbjct: 115 --DASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFKGPSITIDTACSSSLLALQSAY 172
Query: 196 NHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXX 255
I GE + + GG + + P F+ LSQ R +D G+
Sbjct: 173 QAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLSQDGT-----CRSFDAEGTGYCRAEA 227
Query: 256 XXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSR 315
A++ A I G+ T + P G I A +G
Sbjct: 228 VVAVLLTKKSLARRVYATI---LNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDP 284
Query: 316 EDVNYINAHATSTPAGDIKEYQALIH--CFGQNRGLRVNSTKSMIGHLLXXXXXXXXXXX 373
E + YI AH T T GD +E +++ C + L + STKS +GH
Sbjct: 285 ESLEYIEAHGTGTKVGDPQELNGIVNALCATRREPLLIGSTKSNMGHPEPASGVAALIKV 344
Query: 374 XXXXRTGWIHPNINLENPD 392
G PN++ P+
Sbjct: 345 LLSLEHGVWAPNLHYHTPN 363
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 140/360 (38%), Gaps = 22/360 (6%)
Query: 54 SEIETFDCTSFPTKIAAEIKS-FSTDGW-VAPKLSKRMDKFMLYLLTAGKKALADGGIT- 110
+EI T + A+I + F W ++P ++ +D+ L+ + A A G T
Sbjct: 2607 TEIRVPRKTKLSRTVGAQIPTGFDPTVWGISPDMASSIDRVALWNIVATVDAFLSSGFTP 2666
Query: 111 EDVMNELDKSKCGVLIGSGLGGMKVFYDAIEALRISYKKMNPFCVPFATTNMGSAMLAMD 170
++M + S+ G+G+GGM + K N + + ++
Sbjct: 2667 TELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQSY 2726
Query: 171 LGWMGPNYSISTACATSNFCILNAANHIIRGEANVMLCGGSDAAVIP--IGLGGFVAC-- 226
+G G ACAT+ + + I G+A++++ GG D + IG G A
Sbjct: 2727 VGGYGAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDDLTLEAIIGFGDMAATAD 2786
Query: 227 -RALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTS 285
+ + +K SR D R GF+ A K G + A +
Sbjct: 2787 TEMMRAKGISDSKFSRANDRRRLGFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFA 2846
Query: 286 DAYHMTEPHPDGVGVI--------LCIEKALAHSGVSREDVNYINAHATSTPAGDIKE-- 335
D H + P P G+G + + ++LA GV +D+ I+ H TST A D E
Sbjct: 2847 DGVHTSIPAP-GLGALGAARGGRESTLARSLAQLGVGADDIAVISKHDTSTLANDPNETE 2905
Query: 336 -YQALIHCFGQNRG--LRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPD 392
++ + G+ G L + S K++ GH R G I PN +L+ D
Sbjct: 2906 LHERIADSMGRAPGNPLFIVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPNRSLDCVD 2965
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 99/244 (40%), Gaps = 30/244 (12%)
Query: 79 GWVAPK------LSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 130
GW A + + +++D LY+L + +AL GIT+ + + S+ G IGSG+
Sbjct: 1167 GWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGV 1226
Query: 131 GGMKVFYDAIEALRISYK--------KMNPFCVPFATTNMGSAMLAMDLGWMGPNYSIST 182
GG ALR YK + + F T M + + + L GP +
Sbjct: 1227 GGTS-------ALRGMYKDRYLDKPVQKDILQESFVNT-MAAWVNMLLLSSTGPIKTPVG 1278
Query: 183 ACATSNFCILNAANHIIRGEANVMLCGGSD-----AAVIPIGLGGFVACRALSQRNNDPT 237
ACAT+ + + I++G+A V L GG D + +G + R +P
Sbjct: 1279 ACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPG 1338
Query: 238 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 297
+ SRP R+GF+ A + G IY S +D + P P G
Sbjct: 1339 EMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAP-G 1397
Query: 298 VGVI 301
GV+
Sbjct: 1398 QGVL 1401
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)
Query: 79 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 130
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 993 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1052
Query: 131 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 183
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1053 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1105
Query: 184 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS------QRNNDPT 237
CATS + I+ G+A + + GG D G F +A S + P
Sbjct: 1106 CATSVESVDIGVETILSGKARICIVGGYD-DFQEEGSFEFGNMKATSNTLEEFEHGRTPA 1164
Query: 238 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 297
+ SRP R+GF+ A K G IY + +D + P P G
Sbjct: 1165 EMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP-G 1223
Query: 298 VGVI 301
G++
Sbjct: 1224 KGIL 1227
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)
Query: 79 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 130
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 1192 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
Query: 131 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 183
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1252 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1304
Query: 184 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS------QRNNDPT 237
CATS + I+ G+A + + GG D G F +A S + P
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYD-DFQEEGSFEFGNMKATSNTLEEFEHGRTPA 1363
Query: 238 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 297
+ SRP R+GF+ A K G IY + +D + P P G
Sbjct: 1364 EMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP-G 1422
Query: 298 VGVI 301
G++
Sbjct: 1423 KGIL 1426
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 97/244 (39%), Gaps = 30/244 (12%)
Query: 79 GW------VAPKLSKRMDKFMLYLLTAGKKALADGGITE--DVMNELDKSKCGVLIGSGL 130
GW ++ + ++D L++L + +A GIT+ ++ + S+ G GSG+
Sbjct: 1192 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
Query: 131 GGMKVFYDAIEALRISYK---KMNPF---CVPFATTNMGSAMLAMDL-GWMGPNYSISTA 183
GG + ALR +K K P + + N SA + M L GP + A
Sbjct: 1252 GG-------VSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGA 1304
Query: 184 CATSNFCILNAANHIIRGEANVMLCGGSDAAVIPIGLGGFVACRALS------QRNNDPT 237
CATS + I+ G+A + + GG D G F +A S + P
Sbjct: 1305 CATSVESVDIGVETILSGKARICIVGGYD-DFQEEGSFEFGNMKATSNTLEEFEHGRTPA 1363
Query: 238 KASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDG 297
+ SRP R+GF+ A K G IY + +D + P P G
Sbjct: 1364 EMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP-G 1422
Query: 298 VGVI 301
G++
Sbjct: 1423 KGIL 1426
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,630,958
Number of Sequences: 62578
Number of extensions: 444569
Number of successful extensions: 969
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 52
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)