BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013948
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 108 bits (270), Expect = 6e-24, Method: Composition-based stats.
Identities = 58/119 (48%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K +GN M+ + + A+ Y AI L NAVY+ NRAAAY+++ YA AV+DC +
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296
+I IDP YSKAY R+GLA + + +A+ +KKAL+LDP+NE K N+++AE KLRE
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAY-YKKALELDPDNETYKSNLKIAELKLRE 129
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240
K +GN M ++YS AI+LY+ A+++ N +Y SNRAAAY+ Q+ +A D +
Sbjct: 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 241 IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLRE 296
+DP YSKA+SRLGLA + +Y A E ++K ++ + N ++A+K + ++K+ E
Sbjct: 74 VDPKYSKAWSRLGLARFDMADYKGAKE-AYEKGIEAEGNGGSDAMKRGLETTKRKIEE 130
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
N AE +K GN + Y AIE Y A+ L NNA + N AY + Y +A+
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293
K++++DPN +KA+ R G AYY QG+Y AIE ++KAL+LDPNN K+N+ A+QK
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIED-YQKALELDPNNAKAKQNLGNAKQK 123
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
GN + Y AIE Y A+ L NNA + R AY + Y +A+ D K++++DPN
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 245 YSKAYSRLGLAYYAQG 260
+KA LG A QG
Sbjct: 110 NAKAKQNLGNAKQKQG 125
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
N AE + GN + Y +AIE Y A+ L NNA + N AY + Y EA+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293
K++++DPN ++A+ LG AYY QG+Y++AIE ++KAL+LDPNN K+N+ A+QK
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY-YQKALELDPNNAEAKQNLGNAKQK 123
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
N AE + GN + Y +AIE Y A+ L NNA + N AY + Y EA+
Sbjct: 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 100
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQG 260
K++++DPN ++A LG A QG
Sbjct: 101 QKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
N AE + GN + Y +AIE Y A+ L NNA + N AY + Y EA+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293
K++++ PN ++A+ LG AYY QG+Y++AIE ++KAL+L PNN K+N+ A+QK
Sbjct: 67 QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY-YQKALELYPNNAEAKQNLGNAKQK 123
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
GN+A + N AY + Y EA+ K++++DPN ++A+ LG AYY QG+Y++AIE
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 269 GFKKALQLDPNNEAVKENIRMAEQK 293
++KAL+LDPNN K+N+ A+QK
Sbjct: 66 -YQKALELDPNNAEAKQNLGNAKQK 89
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
N AE + GN + Y +AIE Y A+ L NNA + N AY + Y EA+
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQG 260
K++++DPN ++A LG A QG
Sbjct: 67 QKALELDPNNAEAKQNLGNAKQKQG 91
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 171 AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAE 230
AY LA+ K +GN + Y A+ Y+ A+ NA+ YSNRAA T++ ++
Sbjct: 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQR 65
Query: 231 AVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
A+ DC I +D + K Y R A ++ A ++ ++ ALQ+DP+NE +E +R
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKA-QRAYEDALQVDPSNEEAREGVR 122
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K Q N +++ Y +AI+ YS AI L +NA+YY NR+ AY + Y A+ D +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284
+I++D Y K Y R + A G + A+ + ++ +++ P+++ K
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAAL-RDYETVVKVKPHDKDAK 111
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240
K +GN+ + DA++ YS AI L +N V YSNR+AAY + Y +A D K++D
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 241 IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293
+ P++ K YSR A + +A ++ +++ L+ + NN +KE ++ E +
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEEA-KRTYEEGLKHEANNPQLKEGLQNMEAR 118
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
+LA + K +GN Q Y A++ Y+ AI +A YSNRAA YT++ ++ A++DC
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDC 73
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277
+ I ++P + K Y+R A A +Y A++ ++KAL LD
Sbjct: 74 EECIQLEPTFIKGYTRKAAALEAMKDYTKAMD-VYQKALDLD 114
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K Q N +++ Y +AI+ YS AI L +NA+YY NR+ AY + Y A+ D +
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284
+I++D Y K Y R + A G + A+ + ++ +++ P+++ K
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAAL-RDYETVVKVKPHDKDAK 118
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE K Q N +++ Y +AI+ YS AI L +NA+YY NR+ AY + Y A+ D +
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATR 80
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284
+I++D Y K Y R + A G + A+ + ++ +++ P+++ K
Sbjct: 81 AIELDKKYIKGYYRRAASNMALGKFRAAL-RDYETVVKVKPHDKDAK 126
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE + GN + Y +AIE Y A+ L +A + N AY + Y EA+ K
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287
++++DP ++A+ LG AYY QG+Y++AIE ++KAL+LDP + N+
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEY-YQKALELDPRSAEAWYNL 109
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE + GN + Y +AIE Y A+ L +A + N AY + Y EA+ K
Sbjct: 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278
++++DP ++A+ LG AYY QG+Y++AIE ++KAL+LDP
Sbjct: 95 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEY-YQKALELDP 134
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%)
Query: 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216
+A E++K+ A AY AE + +G + +A++ Y+ I +A YS
Sbjct: 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 177
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
NRAAA ++ + EA+ DC K+I+ DPN+ +AY R A A Y A+E
Sbjct: 178 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
++A+ K +GN+ +++Q+ +AIE Y+ A L + Y +NRAAA + +Y A+
Sbjct: 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL-HKDITYLNNRAAAEYEKGEYETAISTL 61
Query: 236 LKSI----DIDPNY---SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
++ ++ +Y SK+++R+G AY+ G+ IE ++K+L + + +R
Sbjct: 62 NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE-YYQKSL-TEHRTADILTKLR 119
Query: 289 MAEQKLRE 296
AE++L++
Sbjct: 120 NAEKELKK 127
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A+ K QGNR+ ++Y +A Y AI AVYY+NRA Y ++ Q +A+ DC +
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266
++++D KA+ LG +Y++AI
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAI 92
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
AE + +G + +A++ Y+ I +A YSNRAAA ++ + EA+ DC K
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
+I+ DPN+ +AY R A A Y A+E
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALE 93
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237
A+ K QGNR+ ++Y +A Y AI AVYY+NRA Y ++ Q +A+ DC +
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266
++++D KA+ LG +Y++AI
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAI 97
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240
K +GN ++ +++AI+ Y +AI L N V+YSN +A Y + + K+++
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87
Query: 241 IDPNYSKAYSRLGLAYYAQGNYNDAI 266
I P++SKA R A + GN+ DA+
Sbjct: 88 IKPDHSKALLRRASANESLGNFTDAM 113
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFK 271
AV NR + + EA++ +I++DPN YS + Y + G+ IE
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFT-T 83
Query: 272 KALQLDPNN 280
KAL++ P++
Sbjct: 84 KALEIKPDH 92
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 237 KSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
K++D++P Y Y G Y+ +Y +A E F+KA L+P N
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKE-DFQKAQSLNPEN 343
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240
K +GN ++ +++AI+ Y +AI L N V+YSN +A Y + + K+++
Sbjct: 24 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE 83
Query: 241 IDPNYSKAYSRLGLAYYAQGNYNDAI 266
I P++SKA R A + GN+ DA+
Sbjct: 84 IKPDHSKALLRRASANESLGNFTDAM 109
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFK 271
AV NR + + EA++ +I++DPN YS + Y + G+ IE
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFT-T 79
Query: 272 KALQLDPNN 280
KAL++ P++
Sbjct: 80 KALEIKPDH 88
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 237 KSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
K++D++P Y Y G Y+ +Y +A E F+KA L+P N
Sbjct: 297 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKE-DFQKAQSLNPEN 339
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240
K +GN+ ++++Y DAI+ Y++A+ L + V+YSN +A Y + + V K+++
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 241 IDPNYSKAYSRLGLAYYAQGNYNDAI 266
+ P+YSK R A G + DA+
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAM 93
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 195 SDAIELYSF---AIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR 251
+D+ E Y++ A+ L NN+ Y +R + Y +A +D K+ ++DP Y +
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343
Query: 252 LGLAYYAQGNYNDA 265
L Y + ++D
Sbjct: 344 LACLAYRENKFDDC 357
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
N A + ++ ++ A+ C K++++D N K SR G A+ A ++ A F+K LQL
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELA-RADFQKVLQL 259
Query: 277 DPNNEAVKENIRMAEQKLREERQR 300
PNN+A K + + +Q++R + R
Sbjct: 260 YPNNKAAKTQLAVCQQRIRRQLAR 283
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274
+ N AY + Y EA+ K++++DP ++A+ LG AYY QG+Y++AIE ++KAL
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY-YQKAL 64
Query: 275 QLDP 278
+LDP
Sbjct: 65 ELDP 68
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
N A + ++ ++ A+ C K++++D N K R G A+ A ++ A F+K LQL
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELA-RADFQKVLQL 259
Query: 277 DPNNEAVKENIRMAEQKLREERQR 300
PNN+A K + + +Q++R + R
Sbjct: 260 YPNNKAAKTQLAVCQQRIRRQLAR 283
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 83/216 (38%), Gaps = 63/216 (29%)
Query: 98 FSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIF 157
F A + + W +EPD+TGV L H+ Q + R
Sbjct: 15 FEAAERHCMQLWRQEPDNTGV---------LLLLSSIHF------------QCRRLDRSA 53
Query: 158 HDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSN 217
H + ++++ A NL ++K +G Q +AIE Y A+ L + Y N
Sbjct: 54 HFSTLAIKQNPLLAEAYSNLGNVYKERG-------QLQEAIEHYRHALRLKPDFIDGYIN 106
Query: 218 RAA-------------AYTQIHQY--------------------AEAVRDC-LKSIDIDP 243
AA AY QY E + C LK+I+ P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
N++ A+S LG + AQG AI F+KA+ LDPN
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHH-FEKAVTLDPN 201
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
GN + +++ + A+ Y A++L N+AV + N A Y + A+ ++I++ P+
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
+ AY L A +G+ +A E + AL+L P +
Sbjct: 270 FPDAYCNLANALKEKGSVAEA-EDCYNTALRLCPTH 304
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 36/189 (19%)
Query: 125 GQFFAALEKFHYFRTM----PDGNDDPSQVDKASRIFHDAI----NEMEKSGAHAYNQKN 176
G+ + A+ F T+ D + V K +RIF A+ + S HA N
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 177 LAEIFKCQGNRVMQSQQYSDAIEL---------------------------YSFAIALCG 209
LA ++ QG + Y AIEL Y+ A+ LC
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269
+A +N A + EAVR K++++ P ++ A+S L QG +A+
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH- 361
Query: 270 FKKALQLDP 278
+K+A+++ P
Sbjct: 362 YKEAIRISP 370
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235
NL +F QG + AI + A+ L N Y N + + AV
Sbjct: 174 NLGCVFNAQGEIWL-------AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279
L+++ + PN++ + L YY QG + AI+ +++A++L P+
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT-YRRAIELQPH 269
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
GN + + +A Y AI N AV +SN + + A+ K++ +DPN
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287
+ AY LG ++ A+ + +AL L PN+ V N+
Sbjct: 202 FLDAYINLGNVLKEARIFDRAV-AAYLRALSLSPNHAVVHGNL 243
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 170 HAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYA 229
HA + NLA I + QGN +A+ LY A+ + A +SN A+ Q +
Sbjct: 304 HADSLNNLANIKREQGN-------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 230 EAVRDCLKSIDIDPNYSKAYSRLG 253
EA+ ++I I P ++ AYS +G
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMG 380
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG-FKKA 273
+ N A Y ++ +Y +AV C K++ +D K R G A + A KG F+K
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA--KGDFEKV 377
Query: 274 LQLDPNNEAVKENIRMAEQKLREERQR 300
L+++P N+A + I M ++K +E +R
Sbjct: 378 LEVNPQNKAARLQISMCQKKAKEHNER 404
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG-FKKA 273
+ N A Y ++ +Y +AV C K++ +D K R G A + A KG F+K
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA--KGDFEKV 377
Query: 274 LQLDPNNEAVKENIRMAEQKLREERQR 300
L+++P N+A + I M ++K +E +R
Sbjct: 378 LEVNPQNKAARLQIFMCQKKAKEHNER 404
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAV---------------YYSNRAA 220
++E K GN +SQ + AI+ Y+ + G+ A N A
Sbjct: 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGA 281
Query: 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
++ + AV CL++++IDP+ +KA R + Y+ A+ KKA ++ P +
Sbjct: 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD-LKKAQEIAPED 340
Query: 281 EAVKENIRMAEQKLREERQR 300
+A++ + +QK++ ++ +
Sbjct: 341 KAIQAELLKVKQKIKAQKDK 360
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 168 GAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227
G A +K L GN + + + A++ Y A L N Y +N+AA Y +
Sbjct: 1 GKQALKEKEL-------GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD 53
Query: 228 YAEAVRDCLKSIDID-------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
Y + C K+I++ +KAY+R+G +Y+ + Y DAI + K+L
Sbjct: 54 YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF-YNKSLAEHRTP 112
Query: 281 EAVKENIRMAEQKLREERQ 299
+ +K+ + AE+ L+E+ +
Sbjct: 113 DVLKK-CQQAEKILKEQER 130
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 168 GAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227
G A +K L GN + + + A++ Y A L N Y +N+AA Y +
Sbjct: 1 GKQALKEKEL-------GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD 53
Query: 228 YAEAVRDCLKSIDID-------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280
Y + C K+I++ +KAY+R+G +Y+ + Y DAI + K+L
Sbjct: 54 YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF-YNKSLAEHRTP 112
Query: 281 EAVKENIRMAEQKLREE 297
+ +K+ + AE+ L+E+
Sbjct: 113 DVLKK-CQQAEKILKEQ 128
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
GN + + + A Y AI L +N +Y+N+AA Y + ++AE V+ C K++++
Sbjct: 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE 74
Query: 245 -------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285
+KA SR G A+ Q + + A++ F ++L + E VK+
Sbjct: 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQ-WFHRSLSEFRDPELVKK 121
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 170 HAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYA 229
HA + NLA I + QGN +A+ LY A+ + A +SN A+ Q +
Sbjct: 8 HADSLNNLANIKREQGN-------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 230 EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278
EA+ ++I I P ++ AYS +G + A++ + +A+Q++P
Sbjct: 61 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQ-CYTRAIQINP 108
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 150 VDKASRIFHDAINEM-EKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC 208
+++A R++ A+ E + AH+ NLA + + QG + +A+ Y AI +
Sbjct: 25 IEEAVRLYRKALEVFPEFAAAHS----NLASVLQQQG-------KLQEALMHYKEAIRIS 73
Query: 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
A YSN ++ A++ ++I I+P ++ A+S L + GN +AI
Sbjct: 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI-A 132
Query: 269 GFKKALQLDPN 279
++ AL+L P+
Sbjct: 133 SYRTALKLKPD 143
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 40/92 (43%)
Query: 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCL 236
A+ + GN + + Q A++ Y+ AI + A +SN A+ + EA+
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135
Query: 237 KSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268
++ + P++ AY L ++ D E+
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
GN + + + A++ Y A L N Y N+AA Y + Y + C K+I++
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRE 70
Query: 245 -------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297
+ AY+R+G +Y+ + Y DAI + K+L + V + + AE+ L+E+
Sbjct: 71 NREDYRMIAYAYARIGNSYFKEEKYKDAIH-FYNKSLA-EHRTPKVLKKCQQAEKILKEQ 128
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY-----------------YSNRAAAYTQ 224
K GN + + ++ +A++ Y AIA G++ ++ + N AA +
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK 242
Query: 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284
+ +Y EA+ C + + KA R G A G D+ F+KA + P+++A++
Sbjct: 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM-DSARDDFRKAQKYAPDDKAIR 301
Query: 285 ENIR-MAEQ 292
+R +AEQ
Sbjct: 302 RELRALAEQ 310
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
N A Y + Y +A+ K + ID N KA +LG+A G +A E + KA L
Sbjct: 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY-KAASL 151
Query: 277 DPNNEAVKENIRMAEQKLREERQR 300
+PNN ++ + + KL+E R++
Sbjct: 152 NPNNLDIRNSYELCVNKLKEARKK 175
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 36.2 bits (82), Expect = 0.034, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239
K QGN + + Y +A+ Y I N V YSN+A A ++ +Y +A++ C + +
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
G +++ + Q +DA+ + A+ +N + Y RA + + + A+ D K I + +
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285
++ A + G QG ++A E FKK L+ +P+ KE
Sbjct: 93 FTAARLQRGHLLLKQGKLDEA-EDDFKKVLKSNPSENEEKE 132
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
EA+R C + + ++P+ A AY + Y++AI+ ++ A + + N++ ++E +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ-DYETAQEHNENDQQIREGLE 370
Query: 289 MAEQKLREERQR 300
A++ L++ ++R
Sbjct: 371 KAQRLLKQSQKR 382
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250
S +Y A++ ++ A+++ N+ + ++ A +Q EAV +++++ P Y ++
Sbjct: 190 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 249
Query: 251 RLGLAYYAQGNYNDAIEKGFKKALQLD-----PNNE--AVKENI 287
LG++ G + +A+E F +AL + P E A+ ENI
Sbjct: 250 NLGISCINLGAHREAVEH-FLEALNMQRKSRGPRGEGGAMSENI 292
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250
S +Y A++ ++ A+++ N+ + ++ A +Q EAV +++++ P Y ++
Sbjct: 181 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 240
Query: 251 RLGLAYYAQGNYNDAIEKGFKKALQLD-----PNNE--AVKENI 287
LG++ G + +A+E F +AL + P E A+ ENI
Sbjct: 241 NLGISCINLGAHREAVEH-FLEALNMQRKSRGPRGEGGAMSENI 283
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250
S +Y A++ ++ A+++ N+ + ++ A +Q EAV +++++ P Y ++
Sbjct: 190 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 249
Query: 251 RLGLAYYAQGNYNDAIEKGFKKALQLD-----PNNE--AVKENI 287
LG++ G + +A+E F +AL + P E A+ ENI
Sbjct: 250 NLGISCINLGAHREAVEH-FLEALNMQRKSRGPRGEGGAMSENI 292
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250
S +Y A++ ++ A+++ N+ + ++ A +Q EAV +++++ P Y ++
Sbjct: 167 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 226
Query: 251 RLGLAYYAQGNYNDAIEKGFKKALQLD-----PNNE--AVKENI 287
LG++ G + +A+E F +AL + P E A+ ENI
Sbjct: 227 NLGISCINLGAHREAVEH-FLEALNMQRKSRGPRGEGGAMSENI 269
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250
S +Y A++ ++ A+++ N+ + ++ A +Q EAV +++++ P Y ++
Sbjct: 230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 289
Query: 251 RLGLAYYAQGNYNDAIEKGFKKALQLD-----PNNE--AVKENI 287
LG++ G + +A+E F +AL + P E A+ ENI
Sbjct: 290 NLGISCINLGAHREAVEH-FLEALNMQRKSRGPRGEGGAMSENI 332
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY---YSNRAAAYTQIHQYAEAVRD 234
AE + G+ + AI+ AIAL N VY Y Y + ++ +A+
Sbjct: 73 AEAYYILGSANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEA 129
Query: 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267
K+I I P + +AY +GLAY +G ++A++
Sbjct: 130 YEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN 244
G +++ + Q +DA+ + A+ +N + Y RA + + A+ D K I + +
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXD 92
Query: 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285
++ A + G QG ++A E FKK L+ +P+ KE
Sbjct: 93 FTAARLQRGHLLLKQGKLDEA-EDDFKKVLKSNPSENEEKE 132
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
EA+R C + + +P+ A AY + Y++AI+ ++ A + + N++ ++E +
Sbjct: 312 VEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQ-DYETAQEHNENDQQIREGLE 370
Query: 289 MAEQKLREERQR 300
A++ L++ ++R
Sbjct: 371 KAQRLLKQSQKR 382
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281
Y Q+ +Y AV +K + +P RLG+A G +++AI+ FK AL L PN
Sbjct: 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAID-SFKIALGLRPNEG 144
Query: 282 AVKENIRMA-EQKLREE 297
V I + EQ R E
Sbjct: 145 KVHRAIAFSYEQMGRHE 161
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 164 MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR---AA 220
+E+S A A + +A + G +Q Q+Y A+ L I + N + ++ R
Sbjct: 65 LERSLADAPDNVKVATVL---GLTYVQVQKYDLAVPLL---IKVAEANPINFNVRFRLGV 118
Query: 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277
A + ++ EA+ ++ + PN K + + +Y G + +A+ FKKA +LD
Sbjct: 119 ALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH-FKKANELD 174
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 199 ELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258
EL ++A +N + Y Q+ +Y AV +K + +P RLG+A
Sbjct: 63 ELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122
Query: 259 QGNYNDAIEKGFKKALQLDPNNEAVKENIRMA-EQKLREE 297
G +++AI+ FK AL L PN V I + EQ R E
Sbjct: 123 LGRFDEAIDS-FKIALGLRPNEGKVHRAIAFSYEQMGRHE 161
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 164 MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR---AA 220
+E+S A A + +A + G +Q Q+Y A+ L I + N + ++ R
Sbjct: 65 LERSLADAPDNVKVATVL---GLTYVQVQKYDLAVPLL---IKVAEANPINFNVRFRLGV 118
Query: 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277
A + ++ EA+ ++ + PN K + + +Y G + +A+ FKKA +LD
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH-FKKANELD 174
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 16/155 (10%)
Query: 143 GNDDPSQV---------DKASRIFHDAINEMEKS-GAHAYNQKNLAEIFKCQGNRVMQSQ 192
GNDD QV KA R + +A+ +E+ A A++ E+ G +++
Sbjct: 2 GNDDIRQVYYRDKGISHAKAGR-YSEAVVMLEQVYDADAFD----VEVALHLGIAYVKTG 56
Query: 193 QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252
EL +IA +N + Y Q+ +Y AV +K + +P RL
Sbjct: 57 AVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRL 116
Query: 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287
G+A G +++AI+ FK AL L PN V I
Sbjct: 117 GVALDNLGRFDEAID-SFKIALGLRPNEGKVHRAI 150
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 164 MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR---AA 220
+E+S A A + +A + G +Q Q+Y A+ L + + N V ++ R
Sbjct: 65 LERSIADAPDNIKVATVL---GLTYVQVQKYDLAVPLL---VKVAEANPVNFNVRFRLGV 118
Query: 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277
A + ++ EA+ ++ + PN K + + +Y G++ +A+ FKKA +LD
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPH-FKKANELD 174
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 199 ELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258
EL ++A +N + Y Q+ +Y AV +K + +P RLG+A
Sbjct: 63 ELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122
Query: 259 QGNYNDAIEKGFKKALQLDPNNEAVKENIRMA-EQKLREE 297
G +++AI+ FK AL L PN V I + EQ R E
Sbjct: 123 LGRFDEAIDS-FKIALGLRPNEGKVHRAIAFSYEQMGRHE 161
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 164 MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR---AA 220
+E+S A A + +A + G +Q Q+Y A+ L I + N + ++ R
Sbjct: 65 LERSLADAPDNVKVATVL---GLTYVQVQKYDLAVPLL---IKVAEANPINFNVRFRLGV 118
Query: 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277
A + ++ EA+ ++ + PN K + + +Y G + +A+ FKKA +LD
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH-FKKANELD 174
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA-YTQIHQYAEAVRDCL 236
+E + G + YS+++ Y A+ L G NA Y+ A Y Q Q+ A +
Sbjct: 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103
Query: 237 --KSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP---NNEAVKENIRMAE 291
K++ +D N A L + Q NY AIE ++K + L+ N + E+I MA
Sbjct: 104 IDKALALDSNEITALMLLASDAFMQANYAQAIE-LWQKVMDLNSPRINRTQLVESINMA- 161
Query: 292 QKLREER 298
KL + R
Sbjct: 162 -KLLQRR 167
>pdb|1WM5|A Chain A, Crystal Structure Of The N-Terminal Tpr Domain (1-203) Of
P67phox
Length = 208
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
N YT + EA + +SI+ D + + AY + G+ YY Y+ AI K K+AL
Sbjct: 47 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI-KDLKEALIQ 105
Query: 277 DPNNEAVKENIRMAEQKL 294
N+ + I + KL
Sbjct: 106 LRGNQLIDYKILGLQFKL 123
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288
EA+R C + + +P+ A AY + Y++AI+ ++ A + + N++ ++E +
Sbjct: 289 VEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQ-DYEAAQEHNENDQQIREGLE 347
Query: 289 MAEQKLREERQR 300
A++ L++ ++R
Sbjct: 348 KAQRLLKQSQKR 359
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
Angstrom Resolution And Biochemical Characterizations Of
The A128v Mutant Implicated In Chronic Granulomatous
Disease
Length = 213
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
N YT + EA + +SI+ D + + AY + G+ YY Y+ AI K K+AL
Sbjct: 42 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI-KDLKEALIQ 100
Query: 277 DPNNEAVKENIRMAEQKL 294
N+ + I + KL
Sbjct: 101 LRGNQLIDYKILGLQFKL 118
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276
N YT + EA + +SI+ D + + AY + G+ YY Y+ AI K K+AL
Sbjct: 42 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI-KDLKEALIQ 100
Query: 277 DPNNEAVKENIRMAEQKL 294
N+ + I + KL
Sbjct: 101 LRGNQLIDYKILGLQFKL 118
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY---NDAIEKGFKKALQLDP 278
Y + Q+ A+ ++D DP YS A+ LG QG+ A E G A Q
Sbjct: 29 YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA-QSRG 87
Query: 279 NNEAVKE 285
+ + VKE
Sbjct: 88 DQQVVKE 94
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277
R Y + A A D +++ I P+ + ++ LG+ GN+ DA + F L+LD
Sbjct: 49 RGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNF-DAAYEAFDSVLELD 107
Query: 278 P 278
P
Sbjct: 108 P 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,529,947
Number of Sequences: 62578
Number of extensions: 502900
Number of successful extensions: 1058
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 110
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)