Query 013948
Match_columns 433
No_of_seqs 358 out of 4478
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:59:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 6.4E-34 1.4E-38 271.7 9.3 264 124-406 204-480 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 3.3E-32 7.1E-37 260.1 20.4 305 16-407 200-525 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 3.9E-25 8.5E-30 229.7 14.5 225 148-380 308-541 (615)
4 TIGR00990 3a0801s09 mitochondr 99.9 3.4E-24 7.3E-29 222.7 17.4 217 147-380 344-575 (615)
5 KOG0547 Translocase of outer m 99.9 2.6E-23 5.6E-28 194.9 15.7 250 149-406 294-561 (606)
6 PRK11447 cellulose synthase su 99.9 5.9E-23 1.3E-27 226.7 18.6 298 34-380 281-670 (1157)
7 PRK12370 invasion protein regu 99.9 9.5E-22 2.1E-26 201.1 19.6 243 18-374 257-500 (553)
8 KOG1126 DNA-binding cell divis 99.9 5.4E-23 1.2E-27 199.9 8.8 206 157-379 410-623 (638)
9 PRK15174 Vi polysaccharide exp 99.9 2.5E-22 5.3E-27 208.8 13.9 286 33-380 87-385 (656)
10 PRK11788 tetratricopeptide rep 99.9 2.9E-21 6.2E-26 190.1 19.9 191 147-381 120-316 (389)
11 PRK15174 Vi polysaccharide exp 99.9 1.7E-21 3.7E-26 202.5 14.6 285 34-380 54-351 (656)
12 PRK11447 cellulose synthase su 99.9 4.8E-21 1E-25 211.7 17.8 217 146-380 281-528 (1157)
13 TIGR02917 PEP_TPR_lipo putativ 99.9 7.1E-21 1.5E-25 205.8 18.8 324 34-388 477-812 (899)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 7.4E-21 1.6E-25 205.7 18.8 343 34-408 443-799 (899)
15 PRK11189 lipoprotein NlpI; Pro 99.8 4.4E-20 9.6E-25 174.0 18.5 220 147-380 39-269 (296)
16 KOG1126 DNA-binding cell divis 99.8 3.8E-20 8.3E-25 180.2 14.1 147 147-304 468-614 (638)
17 PRK09782 bacteriophage N4 rece 99.8 2.9E-19 6.4E-24 190.4 21.6 189 147-380 522-710 (987)
18 KOG1155 Anaphase-promoting com 99.8 1.3E-19 2.9E-24 169.2 16.2 196 147-378 343-538 (559)
19 PRK12370 invasion protein regu 99.8 4.8E-19 1E-23 181.2 18.8 191 147-380 274-474 (553)
20 KOG0553 TPR repeat-containing 99.8 2.1E-18 4.5E-23 154.2 19.2 120 178-298 81-200 (304)
21 PRK09782 bacteriophage N4 rece 99.8 1.7E-18 3.7E-23 184.6 20.4 191 147-381 555-745 (987)
22 KOG0624 dsRNA-activated protei 99.8 1.1E-18 2.4E-23 157.5 14.7 295 35-380 51-374 (504)
23 KOG0547 Translocase of outer m 99.8 7.4E-19 1.6E-23 165.2 11.2 215 148-379 340-569 (606)
24 PRK10049 pgaA outer membrane p 99.8 4.7E-18 1E-22 180.3 16.2 245 147-408 129-456 (765)
25 PRK11788 tetratricopeptide rep 99.8 5.6E-18 1.2E-22 166.7 15.5 218 147-381 48-283 (389)
26 KOG1173 Anaphase-promoting com 99.8 4.4E-18 9.5E-23 162.8 11.9 203 178-387 312-529 (611)
27 KOG0548 Molecular co-chaperone 99.8 3.5E-17 7.5E-22 156.1 17.8 170 177-380 223-459 (539)
28 PF13429 TPR_15: Tetratricopep 99.8 3E-18 6.5E-23 160.8 9.9 255 33-376 19-277 (280)
29 TIGR02521 type_IV_pilW type IV 99.8 7.4E-17 1.6E-21 145.9 18.6 189 147-378 44-234 (234)
30 PRK15359 type III secretion sy 99.7 1.1E-16 2.4E-21 134.1 17.4 129 154-296 13-141 (144)
31 KOG1155 Anaphase-promoting com 99.7 1.1E-16 2.4E-21 149.8 17.1 197 146-375 274-494 (559)
32 KOG1129 TPR repeat-containing 99.7 2.3E-16 4.9E-21 141.8 17.6 223 147-387 236-470 (478)
33 PLN02789 farnesyltranstransfer 99.7 9.2E-17 2E-21 151.5 15.9 206 147-390 50-264 (320)
34 PLN02789 farnesyltranstransfer 99.7 4.5E-16 9.8E-21 146.8 20.5 170 149-359 87-267 (320)
35 PRK10049 pgaA outer membrane p 99.7 2.7E-16 5.8E-21 166.9 19.7 186 189-381 248-461 (765)
36 TIGR02521 type_IV_pilW type IV 99.7 4.5E-16 9.8E-21 140.7 17.7 171 177-380 30-202 (234)
37 KOG2002 TPR-containing nuclear 99.7 8E-17 1.7E-21 162.6 12.9 319 34-409 354-710 (1018)
38 PF13429 TPR_15: Tetratricopep 99.7 1.7E-16 3.7E-21 148.9 13.7 224 29-307 51-274 (280)
39 KOG1125 TPR repeat-containing 99.7 6.3E-16 1.4E-20 148.8 17.3 217 182-412 289-528 (579)
40 COG3063 PilF Tfp pilus assembl 99.7 7E-16 1.5E-20 132.9 15.7 191 147-380 48-240 (250)
41 KOG1125 TPR repeat-containing 99.7 2.1E-16 4.5E-21 152.1 12.3 191 147-380 298-531 (579)
42 COG2956 Predicted N-acetylgluc 99.7 2E-15 4.4E-20 135.7 17.4 300 1-390 19-326 (389)
43 COG3063 PilF Tfp pilus assembl 99.7 9.6E-16 2.1E-20 132.0 14.2 170 176-378 33-204 (250)
44 KOG2002 TPR-containing nuclear 99.7 1E-15 2.2E-20 154.7 16.5 225 147-380 283-529 (1018)
45 PRK11189 lipoprotein NlpI; Pro 99.7 4.5E-15 9.7E-20 140.0 17.6 192 147-358 77-282 (296)
46 KOG0548 Molecular co-chaperone 99.7 2.7E-15 5.9E-20 143.3 15.8 148 146-294 310-473 (539)
47 KOG0550 Molecular chaperone (D 99.7 1.3E-15 2.7E-20 141.0 12.9 275 34-379 61-353 (486)
48 TIGR03302 OM_YfiO outer membra 99.6 4.4E-15 9.5E-20 135.7 14.7 190 175-379 30-235 (235)
49 PRK10370 formate-dependent nit 99.6 2.3E-14 5E-19 126.5 18.1 127 147-284 52-181 (198)
50 KOG2076 RNA polymerase III tra 99.6 2E-14 4.2E-19 144.7 19.1 218 148-380 153-482 (895)
51 PRK15359 type III secretion sy 99.6 7.8E-15 1.7E-19 122.9 13.6 103 147-259 37-139 (144)
52 KOG1174 Anaphase-promoting com 99.6 6.1E-15 1.3E-19 136.4 13.8 259 34-380 244-504 (564)
53 KOG4162 Predicted calmodulin-b 99.6 6.6E-14 1.4E-18 138.8 21.0 134 214-380 652-787 (799)
54 KOG1173 Anaphase-promoting com 99.6 1E-14 2.2E-19 139.9 14.4 149 147-306 359-514 (611)
55 KOG2003 TPR repeat-containing 99.6 3.8E-15 8.2E-20 139.1 10.3 196 178-380 490-693 (840)
56 TIGR02552 LcrH_SycD type III s 99.6 6E-14 1.3E-18 116.5 16.7 124 155-289 4-127 (135)
57 TIGR03302 OM_YfiO outer membra 99.6 1.3E-13 2.8E-18 125.9 18.2 154 147-308 46-230 (235)
58 KOG2076 RNA polymerase III tra 99.6 9.4E-13 2E-17 132.7 23.8 281 36-377 153-513 (895)
59 KOG1840 Kinesin light chain [C 99.5 2.3E-13 5.1E-18 134.1 18.4 198 147-374 254-477 (508)
60 KOG0495 HAT repeat protein [RN 99.5 3E-14 6.5E-19 138.5 11.1 193 147-386 664-857 (913)
61 PRK10747 putative protoheme IX 99.5 2.1E-13 4.5E-18 134.2 17.2 218 147-382 97-363 (398)
62 TIGR00540 hemY_coli hemY prote 99.5 8.2E-13 1.8E-17 130.6 21.1 218 147-380 131-370 (409)
63 KOG1127 TPR repeat-containing 99.5 2.3E-13 5E-18 137.8 17.0 225 139-380 567-883 (1238)
64 PRK14574 hmsH outer membrane p 99.5 5.3E-13 1.2E-17 140.2 20.4 217 147-379 81-359 (822)
65 KOG0624 dsRNA-activated protei 99.5 1.6E-13 3.4E-18 124.4 14.1 198 176-380 36-256 (504)
66 PRK15363 pathogenicity island 99.5 7.7E-13 1.7E-17 109.2 16.4 104 177-281 34-137 (157)
67 PRK10747 putative protoheme IX 99.5 1.5E-12 3.3E-17 128.0 20.5 210 147-377 166-391 (398)
68 KOG1156 N-terminal acetyltrans 99.5 2.7E-13 5.8E-18 132.2 14.5 250 147-412 20-287 (700)
69 KOG0495 HAT repeat protein [RN 99.5 3.4E-12 7.3E-17 124.5 21.0 215 147-380 597-819 (913)
70 PLN03088 SGT1, suppressor of 99.5 8.1E-13 1.7E-17 127.6 16.9 117 180-297 4-120 (356)
71 KOG2003 TPR repeat-containing 99.5 5.6E-13 1.2E-17 124.8 14.8 201 145-362 501-709 (840)
72 KOG1129 TPR repeat-containing 99.5 6.2E-13 1.3E-17 119.9 12.5 233 148-387 193-436 (478)
73 PRK10370 formate-dependent nit 99.5 9.4E-13 2E-17 116.3 12.8 117 191-308 52-171 (198)
74 PRK15179 Vi polysaccharide bio 99.4 4E-12 8.6E-17 131.3 18.6 130 178-308 86-215 (694)
75 COG5010 TadD Flp pilus assembl 99.4 8.5E-12 1.8E-16 110.1 17.1 149 147-306 79-227 (257)
76 KOG0550 Molecular chaperone (D 99.4 3.1E-13 6.8E-18 125.3 8.3 222 146-380 61-320 (486)
77 COG2956 Predicted N-acetylgluc 99.4 7.1E-12 1.5E-16 113.1 16.1 215 148-380 49-282 (389)
78 KOG1840 Kinesin light chain [C 99.4 2.8E-12 6E-17 126.6 14.1 203 147-376 212-438 (508)
79 cd05804 StaR_like StaR_like; a 99.4 1E-11 2.3E-16 120.6 18.0 196 147-379 19-218 (355)
80 PRK15179 Vi polysaccharide bio 99.4 4.3E-12 9.4E-17 131.0 16.1 146 202-380 76-221 (694)
81 TIGR00540 hemY_coli hemY prote 99.4 1.3E-11 2.8E-16 122.0 18.9 192 147-376 200-399 (409)
82 KOG1174 Anaphase-promoting com 99.4 2.3E-12 5E-17 119.5 10.7 224 146-386 244-477 (564)
83 KOG0553 TPR repeat-containing 99.4 1.8E-12 4E-17 116.3 9.2 192 16-263 6-200 (304)
84 COG5010 TadD Flp pilus assembl 99.4 2E-11 4.4E-16 107.7 15.1 175 152-370 51-225 (257)
85 PRK14574 hmsH outer membrane p 99.4 1.1E-11 2.4E-16 130.3 15.3 170 177-380 33-202 (822)
86 cd05804 StaR_like StaR_like; a 99.3 7.9E-12 1.7E-16 121.4 12.8 199 176-376 112-336 (355)
87 TIGR02552 LcrH_SycD type III s 99.3 7.7E-12 1.7E-16 103.7 10.0 108 199-307 4-111 (135)
88 TIGR02795 tol_pal_ybgF tol-pal 99.3 6E-11 1.3E-15 95.7 14.4 108 178-286 2-115 (119)
89 KOG3060 Uncharacterized conser 99.3 3.3E-10 7.1E-15 99.3 19.1 140 147-297 65-204 (289)
90 KOG3060 Uncharacterized conser 99.3 4.1E-10 9E-15 98.7 19.2 196 148-380 26-224 (289)
91 KOG0543 FKBP-type peptidyl-pro 99.3 9.8E-11 2.1E-15 109.6 15.8 122 178-300 208-344 (397)
92 PLN03088 SGT1, suppressor of 99.3 7.8E-11 1.7E-15 113.8 15.8 104 147-260 15-118 (356)
93 KOG4648 Uncharacterized conser 99.3 3.3E-11 7.2E-16 109.5 11.7 191 180-380 99-300 (536)
94 cd00189 TPR Tetratricopeptide 99.3 1.3E-10 2.7E-15 88.7 12.7 99 180-279 2-100 (100)
95 COG4783 Putative Zn-dependent 99.3 2.4E-10 5.2E-15 109.0 16.9 151 176-376 304-454 (484)
96 COG4235 Cytochrome c biogenesi 99.3 3.1E-10 6.7E-15 102.8 16.9 130 148-288 136-268 (287)
97 PRK15363 pathogenicity island 99.3 2.7E-11 6E-16 100.1 9.2 104 204-308 26-130 (157)
98 PRK02603 photosystem I assembl 99.3 3.2E-10 6.9E-15 98.2 16.0 106 174-280 31-153 (172)
99 PF13414 TPR_11: TPR repeat; P 99.2 4.2E-11 9.1E-16 86.8 8.7 66 212-278 3-69 (69)
100 PRK14720 transcript cleavage f 99.2 6.7E-10 1.5E-14 116.0 20.9 234 34-386 43-317 (906)
101 PRK11906 transcriptional regul 99.2 1.4E-10 3.1E-15 111.1 13.8 171 23-273 259-433 (458)
102 PF13414 TPR_11: TPR repeat; P 99.2 5E-11 1.1E-15 86.4 8.3 66 178-243 3-69 (69)
103 PRK15331 chaperone protein Sic 99.2 9.4E-10 2E-14 91.4 15.8 109 175-285 34-142 (165)
104 COG4783 Putative Zn-dependent 99.2 9.9E-10 2.1E-14 104.8 17.7 137 147-294 319-455 (484)
105 CHL00033 ycf3 photosystem I as 99.2 5.2E-10 1.1E-14 96.5 14.5 125 148-281 13-154 (168)
106 KOG4234 TPR repeat-containing 99.2 8.6E-10 1.9E-14 93.2 15.0 118 178-296 95-217 (271)
107 PLN03081 pentatricopeptide (PP 99.2 5.6E-10 1.2E-14 118.2 16.9 242 146-408 302-557 (697)
108 PRK14720 transcript cleavage f 99.2 3.7E-10 8E-15 117.9 14.4 193 175-380 28-256 (906)
109 PRK10153 DNA-binding transcrip 99.2 2.2E-10 4.8E-15 115.1 12.0 149 18-247 338-488 (517)
110 PF12895 Apc3: Anaphase-promot 99.2 1.5E-10 3.2E-15 87.5 8.2 82 190-273 1-84 (84)
111 PF13525 YfiO: Outer membrane 99.2 7.3E-09 1.6E-13 92.1 20.3 159 120-300 5-197 (203)
112 PLN03218 maturation of RBCL 1; 99.2 2E-09 4.4E-14 116.5 19.6 241 147-406 520-781 (1060)
113 KOG1127 TPR repeat-containing 99.1 5.5E-10 1.2E-14 113.9 13.3 140 147-295 539-678 (1238)
114 KOG1156 N-terminal acetyltrans 99.1 3.9E-09 8.5E-14 103.6 18.5 217 147-380 54-287 (700)
115 KOG4162 Predicted calmodulin-b 99.1 6.8E-10 1.5E-14 110.7 13.5 123 148-281 664-788 (799)
116 COG4785 NlpI Lipoprotein NlpI, 99.1 1.5E-10 3.2E-15 99.0 7.1 204 175-380 62-270 (297)
117 KOG1128 Uncharacterized conser 99.1 1.4E-09 3E-14 108.0 14.9 191 178-408 424-616 (777)
118 PF13432 TPR_16: Tetratricopep 99.1 4.4E-10 9.5E-15 80.4 8.3 64 217-281 2-65 (65)
119 PLN03077 Protein ECB2; Provisi 99.1 1.5E-09 3.2E-14 117.7 16.2 236 147-408 437-720 (857)
120 PF09976 TPR_21: Tetratricopep 99.1 5.1E-09 1.1E-13 87.9 15.9 119 147-274 24-145 (145)
121 KOG2376 Signal recognition par 99.1 2.6E-09 5.5E-14 103.8 15.5 225 147-390 25-271 (652)
122 PRK10866 outer membrane biogen 99.1 4.9E-09 1.1E-13 95.6 16.5 177 178-372 32-237 (243)
123 PF13432 TPR_16: Tetratricopep 99.1 3.9E-10 8.5E-15 80.6 7.4 65 182-246 1-65 (65)
124 PRK10866 outer membrane biogen 99.1 1.7E-08 3.7E-13 92.0 19.3 165 119-305 31-236 (243)
125 KOG1130 Predicted G-alpha GTPa 99.1 1.9E-10 4E-15 107.0 6.4 275 33-376 28-344 (639)
126 CHL00033 ycf3 photosystem I as 99.1 5.1E-10 1.1E-14 96.5 8.7 106 191-297 12-122 (168)
127 PRK10803 tol-pal system protei 99.1 6.6E-09 1.4E-13 95.4 16.2 108 178-286 142-256 (263)
128 KOG1128 Uncharacterized conser 99.1 3.1E-10 6.6E-15 112.6 7.8 181 146-376 436-616 (777)
129 KOG3785 Uncharacterized conser 99.1 1E-08 2.2E-13 93.9 17.0 246 147-412 35-352 (557)
130 PF12895 Apc3: Anaphase-promot 99.1 6.9E-10 1.5E-14 83.8 7.8 83 147-238 2-84 (84)
131 PRK10153 DNA-binding transcrip 99.0 9.3E-09 2E-13 103.5 17.9 125 147-283 355-489 (517)
132 PF13525 YfiO: Outer membrane 99.0 3.8E-09 8.1E-14 94.0 13.3 171 178-366 5-197 (203)
133 PLN03218 maturation of RBCL 1; 99.0 1.5E-08 3.3E-13 109.8 19.8 246 146-407 484-747 (1060)
134 PLN03081 pentatricopeptide (PP 99.0 2.5E-09 5.5E-14 113.2 13.3 215 147-380 338-565 (697)
135 PRK11906 transcriptional regul 99.0 8.2E-09 1.8E-13 99.2 14.9 126 148-284 272-409 (458)
136 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.8E-08 4E-13 81.0 13.5 96 147-249 15-113 (119)
137 PF12569 NARP1: NMDA receptor- 99.0 1.5E-08 3.3E-13 101.4 15.4 218 147-376 17-334 (517)
138 PRK02603 photosystem I assembl 98.9 1.9E-09 4.2E-14 93.3 6.8 93 209-302 32-127 (172)
139 cd00189 TPR Tetratricopeptide 98.9 1.5E-08 3.1E-13 77.0 10.8 93 214-307 2-94 (100)
140 PF12569 NARP1: NMDA receptor- 98.9 2.9E-08 6.3E-13 99.4 14.5 203 178-387 4-268 (517)
141 PF14559 TPR_19: Tetratricopep 98.9 8E-09 1.7E-13 74.5 7.4 66 189-254 2-67 (68)
142 PF09976 TPR_21: Tetratricopep 98.9 8.6E-08 1.9E-12 80.4 14.4 124 181-306 14-143 (145)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 8.7E-08 1.9E-12 92.6 15.9 113 147-273 182-294 (395)
144 PLN03077 Protein ECB2; Provisi 98.9 1E-07 2.2E-12 103.5 18.3 213 147-380 502-728 (857)
145 PF12688 TPR_5: Tetratrico pep 98.9 7.6E-08 1.7E-12 77.1 12.9 96 179-275 2-103 (120)
146 COG4235 Cytochrome c biogenesi 98.8 5.7E-08 1.2E-12 88.2 13.4 115 193-308 137-254 (287)
147 KOG0543 FKBP-type peptidyl-pro 98.8 8.3E-08 1.8E-12 90.2 14.8 133 146-278 220-357 (397)
148 COG1729 Uncharacterized protei 98.8 1E-07 2.2E-12 85.6 14.7 109 179-288 142-256 (262)
149 PF13371 TPR_9: Tetratricopept 98.8 2E-08 4.4E-13 73.4 8.6 67 186-252 3-69 (73)
150 PF14938 SNAP: Soluble NSF att 98.8 2E-07 4.4E-12 87.4 17.5 199 147-378 48-268 (282)
151 COG3071 HemY Uncharacterized e 98.8 2.3E-07 5.1E-12 86.6 17.3 224 147-387 97-368 (400)
152 PRK10803 tol-pal system protei 98.8 1.5E-07 3.1E-12 86.6 15.7 96 147-249 156-254 (263)
153 PF14559 TPR_19: Tetratricopep 98.8 1.8E-08 4E-13 72.6 7.4 67 222-289 1-67 (68)
154 KOG2376 Signal recognition par 98.8 2.5E-07 5.4E-12 90.3 17.0 190 33-281 23-258 (652)
155 PF13371 TPR_9: Tetratricopept 98.8 3.4E-08 7.3E-13 72.3 8.5 71 218-289 1-71 (73)
156 PF13512 TPR_18: Tetratricopep 98.8 2.3E-07 5E-12 75.6 13.8 106 178-284 10-136 (142)
157 KOG4648 Uncharacterized conser 98.8 9.3E-09 2E-13 93.8 6.0 213 143-380 106-334 (536)
158 PRK15331 chaperone protein Sic 98.8 1.8E-07 4E-12 77.9 13.0 90 147-247 50-139 (165)
159 KOG4642 Chaperone-dependent E3 98.8 2.6E-08 5.7E-13 86.6 8.0 98 178-276 10-107 (284)
160 KOG0551 Hsp90 co-chaperone CNS 98.8 1.9E-07 4E-12 85.2 13.8 152 115-279 30-185 (390)
161 PRK04841 transcriptional regul 98.8 3.7E-07 8E-12 99.9 18.7 228 147-380 504-764 (903)
162 PF14938 SNAP: Soluble NSF att 98.7 3.6E-08 7.8E-13 92.4 9.3 201 178-406 35-261 (282)
163 KOG4234 TPR repeat-containing 98.7 2E-07 4.3E-12 79.1 12.3 106 140-250 101-206 (271)
164 COG3071 HemY Uncharacterized e 98.7 7E-06 1.5E-10 76.9 23.4 75 269-376 316-390 (400)
165 PF13512 TPR_18: Tetratricopep 98.7 4.3E-07 9.4E-12 74.0 13.4 110 118-248 8-135 (142)
166 PF06552 TOM20_plant: Plant sp 98.7 3.9E-07 8.5E-12 76.6 13.4 98 194-292 7-125 (186)
167 KOG4340 Uncharacterized conser 98.7 4.7E-07 1E-11 81.5 14.4 148 147-305 23-202 (459)
168 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 9.6E-08 2.1E-12 91.8 9.8 70 173-242 70-142 (453)
169 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 4.4E-07 9.5E-12 87.7 14.3 119 186-308 177-295 (395)
170 KOG4555 TPR repeat-containing 98.7 1.7E-06 3.6E-11 68.5 14.8 103 178-281 43-149 (175)
171 COG1729 Uncharacterized protei 98.6 9E-07 1.9E-11 79.6 13.5 97 148-251 155-254 (262)
172 PF13424 TPR_12: Tetratricopep 98.6 1.7E-07 3.7E-12 69.5 7.3 66 176-241 3-75 (78)
173 KOG0376 Serine-threonine phosp 98.6 1.2E-07 2.7E-12 90.7 7.6 118 178-296 4-121 (476)
174 PF04733 Coatomer_E: Coatomer 98.6 2.6E-07 5.6E-12 86.4 9.7 142 147-304 115-259 (290)
175 COG0457 NrfG FOG: TPR repeat [ 98.6 4.6E-06 1E-10 73.9 17.5 190 147-379 72-268 (291)
176 PF12688 TPR_5: Tetratrico pep 98.6 5.2E-07 1.1E-11 72.3 9.9 93 213-306 2-100 (120)
177 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.8E-07 6.1E-12 88.6 9.6 70 207-277 70-142 (453)
178 KOG1915 Cell cycle control pro 98.6 9.3E-06 2E-10 77.6 19.1 248 14-308 280-534 (677)
179 PF13424 TPR_12: Tetratricopep 98.5 9.9E-08 2.2E-12 70.8 4.7 67 209-276 2-75 (78)
180 KOG2047 mRNA splicing factor [ 98.5 3.1E-06 6.8E-11 83.5 16.2 193 208-409 345-580 (835)
181 KOG3785 Uncharacterized conser 98.5 2.1E-07 4.6E-12 85.5 7.2 189 188-387 32-225 (557)
182 COG4105 ComL DNA uptake lipopr 98.5 1.8E-05 3.9E-10 70.6 18.9 167 117-305 31-228 (254)
183 KOG2047 mRNA splicing factor [ 98.5 2.7E-05 5.9E-10 77.1 20.8 318 20-376 246-615 (835)
184 COG4105 ComL DNA uptake lipopr 98.5 1.9E-05 4.2E-10 70.5 17.8 185 178-380 34-237 (254)
185 COG4700 Uncharacterized protei 98.4 1.3E-05 2.9E-10 67.5 15.3 125 179-305 90-217 (251)
186 PRK04841 transcriptional regul 98.4 2.9E-06 6.3E-11 92.9 14.5 223 147-377 465-721 (903)
187 PF04733 Coatomer_E: Coatomer 98.4 9.6E-07 2.1E-11 82.6 9.1 165 178-380 102-269 (290)
188 KOG4340 Uncharacterized conser 98.4 6.4E-07 1.4E-11 80.6 7.1 181 189-380 21-215 (459)
189 KOG4555 TPR repeat-containing 98.4 7E-06 1.5E-10 65.0 11.9 89 147-245 56-148 (175)
190 KOG0545 Aryl-hydrocarbon recep 98.4 9.6E-06 2.1E-10 71.2 13.8 105 178-283 178-300 (329)
191 PF06552 TOM20_plant: Plant sp 98.4 7.7E-06 1.7E-10 68.9 12.4 95 149-253 6-121 (186)
192 KOG1130 Predicted G-alpha GTPa 98.4 8.6E-06 1.9E-10 76.5 14.0 166 128-298 189-372 (639)
193 COG0457 NrfG FOG: TPR repeat [ 98.4 4.4E-05 9.5E-10 67.5 17.9 191 148-379 37-234 (291)
194 KOG1070 rRNA processing protei 98.3 5E-05 1.1E-09 81.1 18.6 193 33-277 1469-1664(1710)
195 KOG1941 Acetylcholine receptor 98.3 1.6E-05 3.4E-10 73.7 12.5 225 122-377 31-276 (518)
196 COG4785 NlpI Lipoprotein NlpI, 98.2 1.2E-05 2.5E-10 69.5 10.7 121 146-277 77-197 (297)
197 KOG1915 Cell cycle control pro 98.2 6.2E-05 1.4E-09 72.1 16.2 198 178-380 73-277 (677)
198 PF13428 TPR_14: Tetratricopep 98.2 3.7E-06 8E-11 54.6 4.9 38 215-252 4-41 (44)
199 PF13428 TPR_14: Tetratricopep 98.1 7E-06 1.5E-10 53.3 5.2 43 246-289 1-43 (44)
200 KOG1308 Hsp70-interacting prot 98.1 2.6E-06 5.7E-11 78.3 4.0 96 182-278 118-213 (377)
201 PF13431 TPR_17: Tetratricopep 98.1 3.7E-06 8.1E-11 51.1 3.1 31 235-265 2-32 (34)
202 PF13431 TPR_17: Tetratricopep 98.1 4E-06 8.8E-11 50.9 3.1 34 200-233 1-34 (34)
203 KOG1941 Acetylcholine receptor 98.1 1.2E-05 2.5E-10 74.5 7.3 232 34-306 18-271 (518)
204 KOG2053 Mitochondrial inherita 98.0 0.00013 2.9E-09 74.9 15.1 217 147-380 22-259 (932)
205 KOG2796 Uncharacterized conser 98.0 0.00012 2.6E-09 65.1 12.6 137 146-292 189-334 (366)
206 KOG1586 Protein required for f 98.0 0.00061 1.3E-08 59.8 16.2 131 148-283 87-231 (288)
207 KOG4642 Chaperone-dependent E3 98.0 2.7E-05 5.9E-10 68.2 7.9 88 144-241 20-107 (284)
208 COG4700 Uncharacterized protei 98.0 0.00018 3.9E-09 60.9 11.9 152 187-373 65-219 (251)
209 KOG0376 Serine-threonine phosp 97.9 1.5E-05 3.2E-10 76.8 6.1 111 147-267 17-129 (476)
210 KOG3081 Vesicle coat complex C 97.9 0.00024 5.3E-09 63.5 13.2 140 146-303 120-263 (299)
211 KOG2053 Mitochondrial inherita 97.9 0.00061 1.3E-08 70.3 17.6 212 189-406 20-253 (932)
212 PF00515 TPR_1: Tetratricopept 97.9 2.1E-05 4.6E-10 47.8 4.5 29 215-243 4-32 (34)
213 KOG1585 Protein required for f 97.9 0.0011 2.4E-08 58.6 16.4 139 147-291 84-238 (308)
214 KOG1586 Protein required for f 97.9 0.0031 6.6E-08 55.5 18.6 167 212-405 74-259 (288)
215 KOG1585 Protein required for f 97.9 0.001 2.2E-08 58.7 15.8 219 149-400 8-248 (308)
216 PF00515 TPR_1: Tetratricopept 97.9 3E-05 6.5E-10 47.1 4.5 34 246-280 1-34 (34)
217 KOG2610 Uncharacterized conser 97.8 0.00032 6.9E-09 64.6 12.4 149 183-332 108-270 (491)
218 PF07719 TPR_2: Tetratricopept 97.8 4.7E-05 1E-09 46.1 4.9 29 249-278 4-32 (34)
219 PF07719 TPR_2: Tetratricopept 97.8 5.2E-05 1.1E-09 45.9 5.1 34 212-245 1-34 (34)
220 KOG0545 Aryl-hydrocarbon recep 97.8 0.0003 6.5E-09 62.0 11.1 115 135-249 179-301 (329)
221 PF04184 ST7: ST7 protein; In 97.8 0.0011 2.3E-08 64.6 15.8 107 178-285 259-384 (539)
222 KOG1070 rRNA processing protei 97.8 0.00046 1E-08 74.1 14.5 204 147-390 1471-1680(1710)
223 PF05843 Suf: Suppressor of fo 97.8 0.0013 2.9E-08 61.4 15.8 125 147-282 14-142 (280)
224 KOG2796 Uncharacterized conser 97.7 0.0005 1.1E-08 61.3 11.4 131 176-307 175-312 (366)
225 KOG3081 Vesicle coat complex C 97.6 0.0015 3.3E-08 58.5 13.1 128 147-282 150-277 (299)
226 KOG2471 TPR repeat-containing 97.6 0.00037 8E-09 67.2 9.7 118 178-296 240-384 (696)
227 PF10300 DUF3808: Protein of u 97.6 0.0011 2.5E-08 66.5 13.6 119 147-276 246-376 (468)
228 COG3898 Uncharacterized membra 97.6 0.0045 9.8E-08 58.4 16.2 225 146-386 96-368 (531)
229 PF03704 BTAD: Bacterial trans 97.6 0.0032 7E-08 52.6 14.2 95 180-275 8-124 (146)
230 PF04184 ST7: ST7 protein; In 97.6 0.0021 4.5E-08 62.7 14.0 116 187-305 177-319 (539)
231 PF05843 Suf: Suppressor of fo 97.5 0.001 2.2E-08 62.3 11.3 126 180-306 3-132 (280)
232 COG2976 Uncharacterized protei 97.4 0.0099 2.2E-07 51.0 14.7 100 178-280 89-192 (207)
233 PF10300 DUF3808: Protein of u 97.4 0.003 6.6E-08 63.4 13.6 153 148-305 202-371 (468)
234 PF13181 TPR_8: Tetratricopept 97.4 0.00031 6.7E-09 42.5 4.1 29 215-243 4-32 (34)
235 PF03704 BTAD: Bacterial trans 97.4 0.0036 7.8E-08 52.3 11.8 94 148-241 20-125 (146)
236 KOG0530 Protein farnesyltransf 97.4 0.0061 1.3E-07 54.5 13.2 135 148-293 92-233 (318)
237 KOG2610 Uncharacterized conser 97.3 0.0026 5.5E-08 58.8 11.1 116 146-272 115-234 (491)
238 COG3118 Thioredoxin domain-con 97.3 0.01 2.2E-07 54.3 14.8 137 147-296 147-287 (304)
239 KOG3617 WD40 and TPR repeat-co 97.3 0.002 4.4E-08 65.9 10.5 186 177-370 857-1103(1416)
240 KOG3617 WD40 and TPR repeat-co 97.3 0.002 4.3E-08 66.0 10.2 31 344-375 965-995 (1416)
241 PF13281 DUF4071: Domain of un 97.2 0.012 2.6E-07 56.5 14.9 181 178-380 141-338 (374)
242 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0012 2.7E-08 60.8 7.8 93 147-245 94-186 (390)
243 PF13181 TPR_8: Tetratricopept 97.2 0.00085 1.8E-08 40.5 4.6 32 179-210 2-33 (34)
244 KOG1308 Hsp70-interacting prot 97.2 0.00011 2.5E-09 67.8 0.8 87 147-243 127-213 (377)
245 KOG4507 Uncharacterized conser 97.1 0.0016 3.5E-08 64.2 7.8 107 185-292 614-721 (886)
246 COG3898 Uncharacterized membra 97.1 0.03 6.5E-07 53.0 15.4 208 147-376 167-392 (531)
247 PF13281 DUF4071: Domain of un 97.0 0.052 1.1E-06 52.2 16.6 155 146-308 153-332 (374)
248 COG3118 Thioredoxin domain-con 97.0 0.011 2.4E-07 54.0 11.3 125 178-305 134-260 (304)
249 PF04781 DUF627: Protein of un 96.9 0.016 3.4E-07 45.1 10.4 92 184-276 2-107 (111)
250 KOG3616 Selective LIM binding 96.9 0.13 2.7E-06 52.7 19.0 230 120-373 647-908 (1636)
251 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0082 1.8E-07 40.3 7.5 43 248-291 3-45 (53)
252 PF13174 TPR_6: Tetratricopept 96.9 0.0024 5.3E-08 38.0 4.4 29 215-243 3-31 (33)
253 PRK10941 hypothetical protein; 96.8 0.015 3.2E-07 53.7 11.3 71 214-285 183-253 (269)
254 KOG1310 WD40 repeat protein [G 96.8 0.0059 1.3E-07 59.7 8.7 102 178-280 374-478 (758)
255 PF09613 HrpB1_HrpK: Bacterial 96.8 0.032 7E-07 46.6 11.9 105 178-285 10-114 (160)
256 KOG2471 TPR repeat-containing 96.8 0.0015 3.3E-08 63.1 4.4 82 178-259 283-382 (696)
257 COG2976 Uncharacterized protei 96.7 0.056 1.2E-06 46.5 13.1 117 230-380 70-192 (207)
258 KOG3824 Huntingtin interacting 96.7 0.0067 1.4E-07 55.5 7.9 76 181-256 119-194 (472)
259 KOG0530 Protein farnesyltransf 96.7 0.079 1.7E-06 47.7 13.9 128 148-286 57-186 (318)
260 PF13174 TPR_6: Tetratricopept 96.6 0.0042 9.2E-08 36.9 4.2 33 247-280 1-33 (33)
261 KOG4507 Uncharacterized conser 96.6 0.011 2.5E-07 58.5 9.2 103 146-257 619-721 (886)
262 KOG2396 HAT (Half-A-TPR) repea 96.6 0.036 7.9E-07 54.1 12.4 95 195-290 88-183 (568)
263 PRK10941 hypothetical protein; 96.6 0.028 6.1E-07 51.8 11.3 79 178-256 181-259 (269)
264 KOG3824 Huntingtin interacting 96.6 0.011 2.4E-07 54.1 8.3 74 217-291 121-194 (472)
265 KOG3364 Membrane protein invol 96.6 0.07 1.5E-06 43.0 11.7 83 211-294 31-118 (149)
266 PF12968 DUF3856: Domain of Un 96.6 0.063 1.4E-06 42.2 11.1 98 178-276 7-129 (144)
267 PF08424 NRDE-2: NRDE-2, neces 96.5 0.095 2.1E-06 50.0 14.9 164 199-377 6-184 (321)
268 PF14561 TPR_20: Tetratricopep 96.5 0.034 7.3E-07 42.1 9.4 64 198-261 8-73 (90)
269 PF13176 TPR_7: Tetratricopept 96.5 0.0066 1.4E-07 37.2 4.6 24 181-204 2-25 (36)
270 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.014 3E-07 39.2 6.4 41 213-253 2-42 (53)
271 COG0790 FOG: TPR repeat, SEL1 96.4 0.15 3.3E-06 47.8 15.8 130 148-295 91-236 (292)
272 PF13176 TPR_7: Tetratricopept 96.4 0.0061 1.3E-07 37.4 4.0 25 249-274 2-26 (36)
273 smart00028 TPR Tetratricopepti 96.4 0.0065 1.4E-07 35.1 4.0 29 215-243 4-32 (34)
274 PF08631 SPO22: Meiosis protei 96.3 0.38 8.2E-06 44.9 17.4 130 146-278 5-152 (278)
275 KOG0985 Vesicle coat protein c 96.3 0.034 7.3E-07 58.6 10.7 59 178-241 1104-1162(1666)
276 PF15015 NYD-SP12_N: Spermatog 96.2 0.11 2.4E-06 49.8 12.9 112 180-292 178-310 (569)
277 KOG2396 HAT (Half-A-TPR) repea 96.2 0.045 9.9E-07 53.5 10.6 90 152-251 89-179 (568)
278 smart00028 TPR Tetratricopepti 96.2 0.0089 1.9E-07 34.5 3.8 33 247-280 2-34 (34)
279 PF09986 DUF2225: Uncharacteri 96.2 0.086 1.9E-06 47.0 11.5 99 190-289 89-208 (214)
280 PF02259 FAT: FAT domain; Int 96.1 0.21 4.6E-06 48.1 15.1 122 176-298 144-309 (352)
281 KOG1914 mRNA cleavage and poly 96.1 0.61 1.3E-05 46.4 17.5 175 199-380 266-470 (656)
282 KOG2300 Uncharacterized conser 96.0 0.41 8.9E-06 46.9 15.9 152 147-302 336-506 (629)
283 PF10602 RPN7: 26S proteasome 96.0 0.41 8.9E-06 41.3 14.6 100 175-275 33-141 (177)
284 COG4976 Predicted methyltransf 96.0 0.011 2.3E-07 52.0 4.7 56 190-245 7-62 (287)
285 KOG1550 Extracellular protein 96.0 0.19 4.1E-06 51.8 14.6 245 146-410 261-537 (552)
286 PF14561 TPR_20: Tetratricopep 96.0 0.055 1.2E-06 41.0 8.0 66 231-297 7-74 (90)
287 KOG1550 Extracellular protein 95.9 0.18 4E-06 51.9 14.3 143 149-308 227-391 (552)
288 TIGR02561 HrpB1_HrpK type III 95.9 0.15 3.2E-06 42.0 10.8 85 179-263 11-95 (153)
289 KOG4814 Uncharacterized conser 95.9 0.13 2.8E-06 51.8 12.3 98 178-276 354-457 (872)
290 PF09613 HrpB1_HrpK: Bacterial 95.8 0.12 2.7E-06 43.2 10.2 86 212-298 10-95 (160)
291 PF02259 FAT: FAT domain; Int 95.7 0.38 8.2E-06 46.3 15.2 129 144-279 156-341 (352)
292 PF04910 Tcf25: Transcriptiona 95.6 0.3 6.5E-06 47.3 13.6 122 175-297 37-194 (360)
293 PF08631 SPO22: Meiosis protei 95.6 2 4.4E-05 40.0 20.8 127 148-275 49-185 (278)
294 PF08424 NRDE-2: NRDE-2, neces 95.4 0.63 1.4E-05 44.4 14.9 110 156-276 7-131 (321)
295 COG3914 Spy Predicted O-linked 95.4 0.27 5.8E-06 49.3 12.3 129 153-290 50-185 (620)
296 COG5191 Uncharacterized conser 95.4 0.045 9.8E-07 50.3 6.5 89 200-289 95-184 (435)
297 COG4976 Predicted methyltransf 95.3 0.028 6.2E-07 49.4 4.7 61 220-281 3-63 (287)
298 KOG2300 Uncharacterized conser 95.1 1 2.2E-05 44.2 15.1 158 147-308 288-472 (629)
299 COG3914 Spy Predicted O-linked 95.1 0.57 1.2E-05 47.0 13.6 111 191-302 44-156 (620)
300 KOG0529 Protein geranylgeranyl 95.1 0.89 1.9E-05 43.8 14.3 133 151-294 46-196 (421)
301 KOG1310 WD40 repeat protein [G 95.1 0.11 2.4E-06 51.2 8.4 91 146-246 386-479 (758)
302 PF12968 DUF3856: Domain of Un 94.9 1.5 3.3E-05 34.7 13.5 95 147-241 22-129 (144)
303 PF09986 DUF2225: Uncharacteri 94.9 2.1 4.5E-05 38.2 15.6 109 143-254 86-208 (214)
304 KOG3616 Selective LIM binding 94.8 0.32 7E-06 49.9 11.1 36 344-380 993-1028(1636)
305 KOG4814 Uncharacterized conser 94.6 0.93 2E-05 46.0 13.6 94 214-308 356-455 (872)
306 KOG3364 Membrane protein invol 94.6 0.75 1.6E-05 37.2 10.6 74 178-251 32-110 (149)
307 KOG0546 HSP90 co-chaperone CPR 94.6 0.065 1.4E-06 50.3 5.3 117 181-298 225-360 (372)
308 COG0790 FOG: TPR repeat, SEL1 94.5 1.8 3.9E-05 40.5 15.4 118 148-280 127-270 (292)
309 PRK15180 Vi polysaccharide bio 94.4 0.28 6.1E-06 47.9 9.4 123 147-280 302-424 (831)
310 COG2912 Uncharacterized conser 94.4 0.34 7.4E-06 44.2 9.4 72 214-286 183-254 (269)
311 PF13374 TPR_10: Tetratricopep 94.3 0.099 2.2E-06 32.6 4.4 28 214-241 4-31 (42)
312 COG2909 MalT ATP-dependent tra 94.2 5.7 0.00012 42.2 18.8 204 147-376 428-647 (894)
313 PF04781 DUF627: Protein of un 94.2 0.45 9.7E-06 37.2 8.4 87 218-305 2-102 (111)
314 TIGR02561 HrpB1_HrpK type III 94.0 0.61 1.3E-05 38.5 9.3 84 214-298 12-95 (153)
315 KOG0985 Vesicle coat protein c 93.9 0.74 1.6E-05 49.1 11.7 159 191-373 1088-1246(1666)
316 KOG1258 mRNA processing protei 93.8 4.7 0.0001 40.8 16.8 123 178-301 297-420 (577)
317 COG5191 Uncharacterized conser 93.8 0.087 1.9E-06 48.5 4.4 75 178-252 107-182 (435)
318 PF13374 TPR_10: Tetratricopep 93.7 0.17 3.7E-06 31.5 4.6 30 246-276 2-31 (42)
319 PF12862 Apc5: Anaphase-promot 93.5 1.7 3.6E-05 33.1 10.7 62 147-209 11-72 (94)
320 PF07079 DUF1347: Protein of u 93.4 8.8 0.00019 37.8 22.7 127 176-306 377-520 (549)
321 COG2912 Uncharacterized conser 93.1 0.75 1.6E-05 42.0 9.2 77 180-256 183-259 (269)
322 PRK13184 pknD serine/threonine 92.6 1 2.3E-05 48.8 11.1 99 184-284 481-589 (932)
323 KOG1464 COP9 signalosome, subu 92.6 3.6 7.8E-05 37.5 12.5 121 148-275 41-173 (440)
324 KOG0529 Protein geranylgeranyl 92.4 1.8 4E-05 41.7 11.1 129 148-287 89-235 (421)
325 PF12862 Apc5: Anaphase-promot 92.3 0.79 1.7E-05 34.9 7.2 29 247-276 42-70 (94)
326 COG3629 DnrI DNA-binding trans 92.1 2.2 4.8E-05 39.5 11.1 63 178-240 153-215 (280)
327 PF04910 Tcf25: Transcriptiona 92.1 7 0.00015 37.9 15.2 132 147-279 53-225 (360)
328 COG2909 MalT ATP-dependent tra 92.1 13 0.00027 39.7 17.5 125 147-276 510-647 (894)
329 PF07720 TPR_3: Tetratricopept 92.0 0.6 1.3E-05 28.5 5.0 34 246-280 1-36 (36)
330 PF10579 Rapsyn_N: Rapsyn N-te 91.9 2.4 5.2E-05 30.9 8.7 64 178-241 6-72 (80)
331 COG5107 RNA14 Pre-mRNA 3'-end 91.9 9.9 0.00021 37.4 15.3 193 157-376 291-495 (660)
332 PRK13184 pknD serine/threonine 91.7 2.2 4.9E-05 46.4 12.2 129 148-285 489-629 (932)
333 KOG1464 COP9 signalosome, subu 91.7 9.6 0.00021 34.9 14.2 124 149-277 120-261 (440)
334 KOG1839 Uncharacterized protei 91.5 1.9 4.1E-05 47.5 11.3 131 174-305 969-1123(1236)
335 KOG1258 mRNA processing protei 91.5 13 0.00028 37.8 16.3 111 146-266 309-420 (577)
336 PF10602 RPN7: 26S proteasome 91.4 4.1 9E-05 35.1 11.6 96 212-308 36-140 (177)
337 KOG2041 WD40 repeat protein [G 91.3 6 0.00013 40.9 13.8 111 174-305 792-902 (1189)
338 PF10516 SHNi-TPR: SHNi-TPR; 91.2 0.4 8.7E-06 29.6 3.6 28 180-207 3-30 (38)
339 KOG4014 Uncharacterized conser 91.1 7.4 0.00016 33.4 12.1 104 147-258 40-156 (248)
340 PF10516 SHNi-TPR: SHNi-TPR; 90.7 0.46 1E-05 29.4 3.6 29 247-276 2-30 (38)
341 PF10373 EST1_DNA_bind: Est1 D 90.7 1 2.2E-05 41.8 7.7 62 197-258 1-62 (278)
342 KOG2581 26S proteasome regulat 90.4 12 0.00026 36.3 14.1 133 147-281 139-281 (493)
343 PF11207 DUF2989: Protein of u 90.3 9.9 0.00021 33.3 12.6 55 245-301 140-198 (203)
344 KOG1839 Uncharacterized protei 90.3 1.3 2.9E-05 48.6 8.8 174 178-376 932-1128(1236)
345 PF10373 EST1_DNA_bind: Est1 D 90.2 1.2 2.6E-05 41.3 7.7 62 231-293 1-62 (278)
346 KOG2422 Uncharacterized conser 89.8 13 0.00028 37.7 14.4 121 147-267 251-399 (665)
347 PF07721 TPR_4: Tetratricopept 89.7 0.42 9E-06 26.6 2.6 18 250-267 5-22 (26)
348 PF15015 NYD-SP12_N: Spermatog 89.7 3.5 7.6E-05 40.0 10.1 94 147-240 189-290 (569)
349 COG4649 Uncharacterized protei 89.7 8.1 0.00018 33.0 11.1 115 190-305 70-191 (221)
350 PF07721 TPR_4: Tetratricopept 89.6 0.47 1E-05 26.4 2.8 24 213-236 2-25 (26)
351 PRK15180 Vi polysaccharide bio 89.4 2 4.4E-05 42.2 8.4 119 188-307 299-417 (831)
352 COG3629 DnrI DNA-binding trans 88.5 5.4 0.00012 37.0 10.3 80 194-276 137-216 (280)
353 PF10579 Rapsyn_N: Rapsyn N-te 88.4 4.1 8.8E-05 29.7 7.4 53 215-267 9-64 (80)
354 PF10345 Cohesin_load: Cohesin 87.5 40 0.00087 35.3 20.4 127 150-284 37-178 (608)
355 PF11817 Foie-gras_1: Foie gra 87.5 9 0.00019 35.0 11.3 87 149-239 153-245 (247)
356 KOG4151 Myosin assembly protei 87.0 3.6 7.7E-05 43.0 9.0 116 182-298 57-178 (748)
357 KOG3807 Predicted membrane pro 86.9 16 0.00035 34.4 12.3 112 185-299 191-329 (556)
358 PF07079 DUF1347: Protein of u 86.3 24 0.00051 34.9 13.5 122 147-275 19-156 (549)
359 smart00386 HAT HAT (Half-A-TPR 85.4 2.6 5.7E-05 24.1 4.6 29 192-220 1-29 (33)
360 KOG0546 HSP90 co-chaperone CPR 85.3 1.3 2.8E-05 41.9 4.5 118 146-263 234-360 (372)
361 KOG3783 Uncharacterized conser 85.1 23 0.0005 35.7 13.1 207 151-375 250-477 (546)
362 COG4455 ImpE Protein of avirul 84.2 30 0.00065 30.8 12.7 60 221-281 10-69 (273)
363 KOG4014 Uncharacterized conser 84.0 25 0.00054 30.4 11.1 65 146-224 85-156 (248)
364 KOG0686 COP9 signalosome, subu 82.9 28 0.00062 33.8 12.2 97 177-274 149-256 (466)
365 KOG1914 mRNA cleavage and poly 82.6 59 0.0013 33.0 19.4 151 148-308 307-462 (656)
366 KOG0890 Protein kinase of the 82.1 18 0.00038 42.9 12.3 116 174-292 1666-1800(2382)
367 COG4649 Uncharacterized protei 82.1 32 0.00069 29.5 14.3 134 148-291 72-210 (221)
368 KOG2422 Uncharacterized conser 81.9 27 0.00059 35.5 12.1 104 190-294 250-390 (665)
369 KOG2041 WD40 repeat protein [G 81.8 23 0.0005 36.9 11.8 94 178-272 692-821 (1189)
370 PF12739 TRAPPC-Trs85: ER-Golg 81.8 58 0.0013 32.3 16.4 158 178-376 208-399 (414)
371 KOG1538 Uncharacterized conser 81.1 10 0.00022 39.0 9.0 179 182-374 636-831 (1081)
372 PF14863 Alkyl_sulf_dimr: Alky 80.1 9.5 0.0002 31.5 7.2 51 178-228 70-120 (141)
373 COG3947 Response regulator con 79.8 8.2 0.00018 35.7 7.3 61 213-274 280-340 (361)
374 COG3947 Response regulator con 79.8 7.3 0.00016 36.0 7.0 58 248-306 281-338 (361)
375 KOG2581 26S proteasome regulat 79.0 33 0.0007 33.4 11.2 129 223-380 137-280 (493)
376 COG5159 RPN6 26S proteasome re 78.3 52 0.0011 30.6 11.8 50 147-198 16-65 (421)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 77.9 23 0.0005 28.6 8.9 81 152-239 44-126 (126)
378 PF11817 Foie-gras_1: Foie gra 77.4 23 0.00051 32.3 9.9 78 192-270 152-241 (247)
379 PF10255 Paf67: RNA polymerase 77.2 5.4 0.00012 39.1 5.8 61 180-241 124-193 (404)
380 KOG0292 Vesicle coat complex C 77.2 37 0.00079 36.4 11.8 21 147-167 1004-1024(1202)
381 KOG0276 Vesicle coat complex C 77.1 28 0.00062 35.6 10.7 98 147-273 650-747 (794)
382 smart00386 HAT HAT (Half-A-TPR 76.9 6.8 0.00015 22.2 4.3 29 260-289 1-29 (33)
383 PF11207 DUF2989: Protein of u 76.5 53 0.0011 28.9 15.2 71 195-267 123-199 (203)
384 PF04053 Coatomer_WDAD: Coatom 76.2 12 0.00026 37.4 8.1 101 187-305 270-371 (443)
385 PF04053 Coatomer_WDAD: Coatom 75.7 16 0.00034 36.6 8.8 28 211-238 346-373 (443)
386 TIGR03504 FimV_Cterm FimV C-te 75.7 6 0.00013 25.3 3.8 24 216-239 3-26 (44)
387 PF10255 Paf67: RNA polymerase 75.7 5.3 0.00011 39.1 5.3 61 214-275 124-192 (404)
388 COG4455 ImpE Protein of avirul 75.0 17 0.00038 32.3 7.6 61 186-246 9-69 (273)
389 COG5536 BET4 Protein prenyltra 74.0 49 0.0011 30.6 10.5 130 151-291 49-194 (328)
390 PF09670 Cas_Cas02710: CRISPR- 74.0 67 0.0014 31.5 12.5 53 147-207 144-198 (379)
391 cd02682 MIT_AAA_Arch MIT: doma 73.8 31 0.00068 25.0 8.2 8 275-282 41-48 (75)
392 KOG1463 26S proteasome regulat 73.7 86 0.0019 29.9 12.3 53 148-202 18-72 (411)
393 cd02682 MIT_AAA_Arch MIT: doma 73.3 31 0.00068 25.0 7.5 36 180-215 8-50 (75)
394 PF10345 Cohesin_load: Cohesin 73.2 64 0.0014 33.8 13.0 93 178-271 301-428 (608)
395 KOG4279 Serine/threonine prote 73.2 68 0.0015 33.9 12.3 26 31-56 296-321 (1226)
396 PF09670 Cas_Cas02710: CRISPR- 73.1 70 0.0015 31.3 12.5 63 179-241 132-198 (379)
397 COG5536 BET4 Protein prenyltra 73.1 21 0.00046 32.9 7.9 132 149-291 89-237 (328)
398 PF14863 Alkyl_sulf_dimr: Alky 72.8 22 0.00047 29.4 7.5 54 211-264 69-122 (141)
399 KOG3783 Uncharacterized conser 70.9 47 0.001 33.6 10.5 66 214-280 451-524 (546)
400 TIGR03504 FimV_Cterm FimV C-te 70.9 9.9 0.00021 24.3 4.0 26 249-275 2-27 (44)
401 PF10952 DUF2753: Protein of u 67.4 64 0.0014 25.9 9.0 27 181-207 4-30 (140)
402 cd02680 MIT_calpain7_2 MIT: do 66.3 15 0.00032 26.6 4.5 19 190-208 18-36 (75)
403 cd02681 MIT_calpain7_1 MIT: do 65.5 13 0.00028 27.0 4.2 17 258-275 18-34 (76)
404 cd02680 MIT_calpain7_2 MIT: do 65.5 14 0.0003 26.8 4.3 17 258-275 18-34 (75)
405 KOG2561 Adaptor protein NUB1, 65.3 59 0.0013 32.0 9.6 97 178-275 163-295 (568)
406 PF06957 COPI_C: Coatomer (COP 64.3 30 0.00065 34.2 7.7 21 147-167 217-237 (422)
407 cd02679 MIT_spastin MIT: domai 64.2 15 0.00033 26.9 4.3 33 227-275 4-36 (79)
408 PF04212 MIT: MIT (microtubule 63.6 14 0.00031 26.0 4.2 16 258-274 17-32 (69)
409 PF09205 DUF1955: Domain of un 63.4 76 0.0017 26.0 8.4 61 215-276 88-149 (161)
410 PF12854 PPR_1: PPR repeat 63.1 20 0.00042 21.2 4.1 21 215-235 10-30 (34)
411 PF11846 DUF3366: Domain of un 62.6 32 0.0007 29.9 7.1 48 229-278 128-175 (193)
412 PHA02537 M terminase endonucle 62.2 58 0.0013 29.3 8.6 32 29-60 90-121 (230)
413 KOG3807 Predicted membrane pro 60.7 1.6E+02 0.0034 28.1 13.3 104 152-267 202-332 (556)
414 PRK11619 lytic murein transgly 60.4 1.5E+02 0.0034 31.3 12.7 79 194-274 295-373 (644)
415 KOG2114 Vacuolar assembly/sort 60.0 23 0.00049 37.7 6.2 104 156-267 349-452 (933)
416 KOG2114 Vacuolar assembly/sort 59.3 1.2E+02 0.0026 32.5 11.2 25 215-239 371-395 (933)
417 PRK15490 Vi polysaccharide bio 59.3 1.9E+02 0.0041 30.0 12.6 78 191-271 21-98 (578)
418 COG1747 Uncharacterized N-term 59.2 2.1E+02 0.0046 29.1 18.2 130 148-291 80-249 (711)
419 PF12854 PPR_1: PPR repeat 59.1 28 0.0006 20.6 4.2 27 245-272 6-32 (34)
420 cd02683 MIT_1 MIT: domain cont 58.8 68 0.0015 23.3 7.4 15 258-273 18-32 (77)
421 PF11846 DUF3366: Domain of un 58.3 50 0.0011 28.7 7.5 53 146-209 123-175 (193)
422 PF04212 MIT: MIT (microtubule 58.0 30 0.00065 24.3 5.0 25 182-206 9-33 (69)
423 PF10952 DUF2753: Protein of u 57.1 65 0.0014 25.8 6.9 82 216-298 5-110 (140)
424 COG4941 Predicted RNA polymera 56.5 1.9E+02 0.0041 27.7 16.9 131 147-288 269-406 (415)
425 PF13226 DUF4034: Domain of un 56.4 1.7E+02 0.0037 27.2 12.5 108 147-262 13-149 (277)
426 smart00299 CLH Clathrin heavy 56.0 1.1E+02 0.0023 24.7 9.6 47 189-236 18-64 (140)
427 PF04090 RNA_pol_I_TF: RNA pol 54.5 1.5E+02 0.0033 26.0 11.8 64 178-241 41-105 (199)
428 PF13041 PPR_2: PPR repeat fam 53.9 57 0.0012 20.9 6.0 17 187-203 12-28 (50)
429 cd02677 MIT_SNX15 MIT: domain 53.7 22 0.00048 25.7 3.7 14 226-239 20-33 (75)
430 PHA02537 M terminase endonucle 53.2 23 0.00049 31.9 4.4 92 188-280 93-211 (230)
431 PF09205 DUF1955: Domain of un 53.2 1E+02 0.0022 25.3 7.5 63 180-242 87-150 (161)
432 PF07219 HemY_N: HemY protein 52.5 80 0.0017 24.5 7.0 49 178-226 59-107 (108)
433 PF01535 PPR: PPR repeat; Int 51.8 24 0.00053 19.5 3.1 10 191-200 13-22 (31)
434 KOG0276 Vesicle coat complex C 50.6 94 0.002 32.1 8.6 26 25-50 496-521 (794)
435 COG4941 Predicted RNA polymera 50.5 96 0.0021 29.6 8.1 203 19-254 190-407 (415)
436 KOG4279 Serine/threonine prote 50.4 59 0.0013 34.3 7.3 133 146-290 255-409 (1226)
437 cd02684 MIT_2 MIT: domain cont 50.0 35 0.00076 24.7 4.3 17 258-275 18-34 (75)
438 PF13226 DUF4034: Domain of un 49.8 1.7E+02 0.0037 27.2 9.7 111 186-297 8-149 (277)
439 cd02681 MIT_calpain7_1 MIT: do 48.2 50 0.0011 24.0 4.8 26 182-207 10-35 (76)
440 PF15469 Sec5: Exocyst complex 47.7 1.7E+02 0.0038 25.0 9.1 22 188-209 96-117 (182)
441 PF08238 Sel1: Sel1 repeat; I 47.1 50 0.0011 19.6 4.2 13 262-275 24-36 (39)
442 TIGR00756 PPR pentatricopeptid 46.2 47 0.001 18.7 3.9 24 182-205 4-27 (35)
443 PF04190 DUF410: Protein of un 46.2 2.4E+02 0.0052 25.9 11.1 27 244-271 88-114 (260)
444 smart00745 MIT Microtubule Int 45.8 45 0.00098 23.9 4.4 16 258-274 20-35 (77)
445 KOG0890 Protein kinase of the 45.4 4.3E+02 0.0092 32.3 13.6 81 194-277 1645-1732(2382)
446 cd02678 MIT_VPS4 MIT: domain c 44.9 47 0.001 23.9 4.3 16 258-274 18-33 (75)
447 PF09477 Type_III_YscG: Bacter 44.9 1.5E+02 0.0033 23.2 8.3 77 189-272 17-94 (116)
448 PF05053 Menin: Menin; InterP 44.5 2.1E+02 0.0045 29.4 9.8 83 192-290 274-367 (618)
449 PRK11619 lytic murein transgly 43.8 4.2E+02 0.0092 28.1 14.7 125 183-309 246-374 (644)
450 PF04190 DUF410: Protein of un 43.7 2.6E+02 0.0057 25.7 12.2 137 154-295 70-242 (260)
451 PF07219 HemY_N: HemY protein 43.6 1.2E+02 0.0027 23.4 6.9 48 214-261 61-108 (108)
452 smart00671 SEL1 Sel1-like repe 43.1 52 0.0011 19.0 3.7 13 261-274 20-32 (36)
453 KOG4151 Myosin assembly protei 42.1 67 0.0014 34.0 6.3 111 147-263 66-178 (748)
454 PF09797 NatB_MDM20: N-acetylt 42.0 55 0.0012 31.8 5.7 47 191-237 196-242 (365)
455 PF12753 Nro1: Nuclear pore co 41.9 53 0.0011 32.0 5.2 20 37-56 129-148 (404)
456 KOG0686 COP9 signalosome, subu 41.6 3.6E+02 0.0078 26.6 11.7 96 212-308 150-256 (466)
457 PF01239 PPTA: Protein prenylt 40.7 70 0.0015 18.2 4.7 26 198-223 3-28 (31)
458 cd02679 MIT_spastin MIT: domai 40.5 64 0.0014 23.6 4.4 15 192-206 22-36 (79)
459 KOG4459 Membrane-associated pr 40.5 2.4E+02 0.0052 28.1 9.4 113 178-291 31-177 (471)
460 smart00745 MIT Microtubule Int 39.5 78 0.0017 22.7 4.8 17 190-206 20-36 (77)
461 PF13812 PPR_3: Pentatricopept 38.9 74 0.0016 17.9 4.1 17 220-236 9-25 (34)
462 PF13041 PPR_2: PPR repeat fam 38.6 1E+02 0.0023 19.6 6.1 28 214-241 5-32 (50)
463 PF09797 NatB_MDM20: N-acetylt 38.6 1.5E+02 0.0033 28.7 8.1 49 146-204 195-243 (365)
464 PF02064 MAS20: MAS20 protein 38.2 75 0.0016 25.4 4.8 35 180-214 65-99 (121)
465 PF02184 HAT: HAT (Half-A-TPR) 37.6 55 0.0012 19.3 2.9 18 149-166 2-19 (32)
466 PF04348 LppC: LppC putative l 37.6 11 0.00024 38.8 0.0 96 178-274 24-125 (536)
467 KOG1920 IkappaB kinase complex 37.4 1.7E+02 0.0037 32.8 8.6 21 392-412 1200-1220(1265)
468 cd02678 MIT_VPS4 MIT: domain c 37.1 91 0.002 22.3 4.8 18 189-206 17-34 (75)
469 cd02683 MIT_1 MIT: domain cont 36.7 1.6E+02 0.0036 21.3 7.7 16 190-205 18-33 (77)
470 smart00777 Mad3_BUB1_I Mad3/BU 36.6 2.2E+02 0.0048 22.9 7.3 76 155-237 47-124 (125)
471 KOG1497 COP9 signalosome, subu 35.7 4E+02 0.0086 25.4 13.1 96 177-274 102-211 (399)
472 KOG4563 Cell cycle-regulated h 35.6 1.1E+02 0.0024 29.4 6.2 58 178-235 41-106 (400)
473 KOG0128 RNA-binding protein SA 35.6 4.9E+02 0.011 28.2 11.2 117 148-276 93-219 (881)
474 PRK15490 Vi polysaccharide bio 35.2 2.5E+02 0.0054 29.1 9.1 57 178-236 42-98 (578)
475 TIGR02710 CRISPR-associated pr 34.3 4.6E+02 0.0099 25.7 13.5 52 147-203 143-196 (380)
476 cd02656 MIT MIT: domain contai 34.0 1.1E+02 0.0024 21.8 4.8 18 189-206 17-34 (75)
477 PF12583 TPPII_N: Tripeptidyl 34.0 1.9E+02 0.0041 23.5 6.3 43 180-222 78-120 (139)
478 PF02064 MAS20: MAS20 protein 32.8 1.4E+02 0.0029 24.0 5.5 28 217-244 68-95 (121)
479 KOG1463 26S proteasome regulat 32.0 4.7E+02 0.01 25.2 11.4 155 146-305 140-311 (411)
480 cd00280 TRFH Telomeric Repeat 31.0 1.1E+02 0.0024 26.5 4.9 48 187-235 120-167 (200)
481 PF15297 CKAP2_C: Cytoskeleton 30.9 1.6E+02 0.0034 28.3 6.4 64 194-257 119-186 (353)
482 COG5107 RNA14 Pre-mRNA 3'-end 30.5 5.8E+02 0.012 25.7 17.7 97 179-276 398-495 (660)
483 PF12753 Nro1: Nuclear pore co 30.0 79 0.0017 30.8 4.3 32 228-261 334-365 (404)
484 TIGR02996 rpt_mate_G_obs repea 28.9 1.4E+02 0.0029 19.0 3.8 32 200-231 4-35 (42)
485 COG5187 RPN7 26S proteasome re 28.9 5E+02 0.011 24.5 11.8 94 212-307 115-218 (412)
486 COG5187 RPN7 26S proteasome re 28.8 5E+02 0.011 24.5 13.8 101 176-277 113-222 (412)
487 PF00244 14-3-3: 14-3-3 protei 28.6 2.7E+02 0.0058 25.2 7.5 23 34-56 13-35 (236)
488 COG3014 Uncharacterized protei 28.5 5.4E+02 0.012 24.8 14.8 45 153-204 40-84 (449)
489 cd02684 MIT_2 MIT: domain cont 28.5 1.5E+02 0.0032 21.4 4.7 17 190-206 18-34 (75)
490 PF06957 COPI_C: Coatomer (COP 28.0 6.1E+02 0.013 25.2 10.3 102 180-282 206-335 (422)
491 PF14852 Fis1_TPR_N: Fis1 N-te 27.2 99 0.0021 18.6 2.9 27 214-240 3-32 (35)
492 KOG1497 COP9 signalosome, subu 26.8 5.7E+02 0.012 24.4 10.2 90 212-303 103-206 (399)
493 cd02677 MIT_SNX15 MIT: domain 26.8 1.6E+02 0.0035 21.2 4.6 16 192-207 20-35 (75)
494 KOG2758 Translation initiation 26.8 2.6E+02 0.0056 26.6 6.9 32 206-237 123-154 (432)
495 KOG0128 RNA-binding protein SA 25.1 2.1E+02 0.0045 30.8 6.6 99 190-290 91-192 (881)
496 TIGR02508 type_III_yscG type I 24.8 3.4E+02 0.0073 21.1 6.1 15 253-267 46-60 (115)
497 PF00244 14-3-3: 14-3-3 protei 24.5 5.3E+02 0.011 23.3 12.3 46 229-275 143-197 (236)
498 COG2015 Alkyl sulfatase and re 24.4 2E+02 0.0042 29.0 5.9 45 182-226 456-500 (655)
499 KOG0292 Vesicle coat complex C 24.0 9.3E+02 0.02 26.6 10.9 106 180-286 993-1123(1202)
500 KOG3677 RNA polymerase I-assoc 23.5 3E+02 0.0066 27.2 6.9 107 180-291 237-353 (525)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-34 Score=271.73 Aligned_cols=264 Identities=17% Similarity=0.170 Sum_probs=197.0
Q ss_pred HHHHHHHHHhhh----hhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHH
Q 013948 124 FGQFFAALEKFH----YFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIE 199 (433)
Q Consensus 124 ~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 199 (433)
...+.++++..+ .|.+++......|+...|+..|++++.++|.. .++|+++|++|-..+.|+.|+.
T Consensus 204 ~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f----------~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 204 KACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF----------LDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc----------hHHHhhHHHHHHHHhcchHHHH
Confidence 334444444433 34455555556788888888888888887776 7888888888888888888888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 013948 200 LYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 200 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~ 279 (433)
+|.+|+.+.|+++.++.++|.+|+.+|..+-|+..|++++++.|+.+.++.+||.++...|+..+|.. +|.++|.+.|+
T Consensus 274 ~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~-cYnkaL~l~p~ 352 (966)
T KOG4626|consen 274 CYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVD-CYNKALRLCPN 352 (966)
T ss_pred HHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHH-HHHHHHHhCCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888 88888888888
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccccccCC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHH
Q 013948 280 NEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMN 351 (433)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~ 351 (433)
.++++.+||.++..+|..+.|...+.++.. .|... .+.+|.++|++++|+..| ++.++| ..+.++.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P-----~fAda~~N 427 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP-----TFADALSN 427 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc-----hHHHHHHh
Confidence 888888888888888888888887776653 22222 256777778888888888 888888 78888888
Q ss_pred HhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccccCCcHHHHHHHHHHH
Q 013948 352 MASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFGENMPEDITGALRSMM 406 (433)
Q Consensus 352 la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~~~~~~~~~~a~~~~~ 406 (433)
+| +.|..+|+...|+.+|.+|+..+|.+ .+++|+.... ++.+.+.+++.++.
T Consensus 428 mG-nt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~--kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 428 MG-NTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY--KDSGNIPEAIQSYR 480 (966)
T ss_pred cc-hHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh--hccCCcHHHHHHHH
Confidence 88 78888888888888888888888877 6677766444 33333333444443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-32 Score=260.08 Aligned_cols=305 Identities=17% Similarity=0.212 Sum_probs=232.9
Q ss_pred HHHHHHHHhhhhCCCCCC------------CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCC
Q 013948 16 IVRSFLHFLDSVEPAPGV------------DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSD 83 (433)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~------------~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 83 (433)
|+.+..-||++.+..+.+ .++.+-.||..|.||+++||++.++|...|+++.....++.+..+-....
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 555566666666543333 45667777777777777777777777777777766666666655332222
Q ss_pred CCCCCCcccCCCccchhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHH
Q 013948 84 NAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINE 163 (433)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 163 (433)
+ .+|.+..+ +.+.+..+.+.|+++-|+..|+++|..
T Consensus 280 ~---------lrpn~A~a-----------------------------------~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 280 N---------LRPNHAVA-----------------------------------HGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred h---------cCCcchhh-----------------------------------ccceEEEEeccccHHHHHHHHHHHHhc
Confidence 2 33333322 223333344578888888888888888
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 164 MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
.|.. ..++.++|+.+-..|+..+|..+|.+++.++|+.+++.++||.++.++|.+++|...|.++++..|
T Consensus 316 ~P~F----------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p 385 (966)
T KOG4626|consen 316 QPNF----------PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP 385 (966)
T ss_pred CCCc----------hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence 7765 788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCC
Q 013948 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGF 323 (433)
Q Consensus 244 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 323 (433)
..+.++.+||.+|.++|++++|+. +|+.++.+.|...+++.++|.+|..+|+...|..++..
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~-~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r----------------- 447 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIM-CYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR----------------- 447 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHH-HHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH-----------------
Confidence 888888888888888888888888 88888888888888888888888888888877766542
Q ss_pred CCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccccccccc---c-----cCC
Q 013948 324 RSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNF---G-----ENM 394 (433)
Q Consensus 324 ~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l---~-----~~~ 394 (433)
|+.++| ..++++.++| .+|.+.|+..+|+..|+.++.++|++ .+..|++..+ + ++.
T Consensus 448 ---------AI~~nP-----t~AeAhsNLa-si~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 448 ---------AIQINP-----TFAEAHSNLA-SIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred ---------HHhcCc-----HHHHHHhhHH-HHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 788999 9999999999 99999999999999999999999999 8888888777 2 233
Q ss_pred cHHHHHHHHHHHh
Q 013948 395 PEDITGALRSMME 407 (433)
Q Consensus 395 ~~~~~~a~~~~~~ 407 (433)
..++.+.++.+.+
T Consensus 513 ~~kl~sivrdql~ 525 (966)
T KOG4626|consen 513 MKKLVSIVRDQLE 525 (966)
T ss_pred HHHHHHHHHHHHh
Confidence 4566667777763
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=3.9e-25 Score=229.65 Aligned_cols=225 Identities=14% Similarity=0.099 Sum_probs=178.1
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
+++++|+..|++++...+. .+..+.++..+|.+++..|++++|+..|++++.++|++...|+.+|.++...|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~-------~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKL-------GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCCC-------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC
Confidence 4688899999998876421 133477888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+++|+..|+++++++|+++.+++.+|.+++..|++++|+. +|+++++++|++..++..+|.++..+|++++|...+..+
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK-DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999888887776
Q ss_pred CC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCc-cHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 308 SS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPT-DIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 308 ~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~-~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
.. .|... .+..+...|++++|+..| ++.++|...+. .....+.+.+..++...|++++|+..++++++++|
T Consensus 460 l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 460 KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 53 22222 256677778999999888 88888821110 01112233331344456888999999999888888
Q ss_pred Cc
Q 013948 379 GI 380 (433)
Q Consensus 379 ~~ 380 (433)
++
T Consensus 540 ~~ 541 (615)
T TIGR00990 540 EC 541 (615)
T ss_pred Cc
Confidence 88
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=3.4e-24 Score=222.68 Aligned_cols=217 Identities=13% Similarity=0.074 Sum_probs=198.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++.++|.. ..+|+.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRV----------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCc----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 589999999999999998887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+.+|++++.++|++..+++.+|.++..+|++++|+. .|+++++..|+++.++..+|.++..+|++++|...+..
T Consensus 414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~-~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA-TFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999998877
Q ss_pred cCC-Cccchh------------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 307 TSS-SHYSQE------------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 307 ~~~-~~~~~~------------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
+.. .+.... ...+...|++++|+..+ ++.++| +...++..+| .++..+|++++|+..|+
T Consensus 493 Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-----~~~~a~~~la-~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 493 AIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-----ECDIAVATMA-QLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-----CcHHHHHHHH-HHHHHccCHHHHHHHHH
Confidence 653 222111 11234469999999999 899999 9999999999 99999999999999999
Q ss_pred hhcCCCCCc
Q 013948 372 VSGSDEPGI 380 (433)
Q Consensus 372 ~al~l~P~~ 380 (433)
+++++.+..
T Consensus 567 ~A~~l~~~~ 575 (615)
T TIGR00990 567 RAAELARTE 575 (615)
T ss_pred HHHHHhccH
Confidence 999998875
No 5
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.6e-23 Score=194.87 Aligned_cols=250 Identities=19% Similarity=0.144 Sum_probs=201.6
Q ss_pred hHHHHHHHHHHHHHHHhhcc---ccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 149 QVDKASRIFHDAINEMEKSG---AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|.+|...+++......... .........+.++...|..++-.|++-.|...|+++|.++|.+...|..+|.+|...
T Consensus 294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADE 373 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhh
Confidence 46666666665554332211 001112456888999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
.+.++-...|.+|..++|+++.+|+.+|++++-+++|++|+. .|++++.++|++.-++..++.+..+.++.++....+.
T Consensus 374 ~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a-DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe 452 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA-DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFE 452 (606)
T ss_pred hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH-HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999988877
Q ss_pred ccCCC-ccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCcc------HHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 306 TTSSS-HYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTD------IASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 306 ~~~~~-~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~------~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
.+... |...+ +.+...+++|++|++.| ++.+.| . .+..+.+.|..+++..+++..|+...+
T Consensus 453 e~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~-----~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~ 527 (606)
T KOG0547|consen 453 EAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP-----REHLIIVNAAPLVHKALLVLQWKEDINQAENLLR 527 (606)
T ss_pred HHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc-----ccccccccchhhhhhhHhhhchhhhHHHHHHHHH
Confidence 77643 33333 56778889999999999 999999 6 666777777556778899999999999
Q ss_pred hhcCCCCCc-ccccccccccccCCcHHHHHHHHHHH
Q 013948 372 VSGSDEPGI-RIGGNINLNFGENMPEDITGALRSMM 406 (433)
Q Consensus 372 ~al~l~P~~-~~~~~~~~~l~~~~~~~~~~a~~~~~ 406 (433)
+|+++||.. .+.-.+. .+ ..+.+++.+|+.-+.
T Consensus 528 KA~e~Dpkce~A~~tla-q~-~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 528 KAIELDPKCEQAYETLA-QF-ELQRGKIDEAIELFE 561 (606)
T ss_pred HHHccCchHHHHHHHHH-HH-HHHHhhHHHHHHHHH
Confidence 999999998 3332222 12 234444444444443
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=5.9e-23 Score=226.74 Aligned_cols=298 Identities=12% Similarity=0.079 Sum_probs=223.3
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|+.+|+++++++|++++++...+.++.....++++......... ..|.+.. ..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~---------~~p~~~~-----------~~ 340 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA---------LDPHSSN-----------RD 340 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCccc-----------hh
Confidence 567899999999999999999997666655555555555555442111110 1111110 00
Q ss_pred CCCCCChhHHHH--HHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Q 013948 114 DSTGVSKDELFG--QFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS 191 (433)
Q Consensus 114 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~ 191 (433)
.| ..++. .+...+.. +......|++++|+..|+++++.+|.+ ..+++.+|.++...
T Consensus 341 ~~-----~~ll~~~~~~~~~~~-------g~~~~~~g~~~eA~~~~~~Al~~~P~~----------~~a~~~Lg~~~~~~ 398 (1157)
T PRK11447 341 KW-----ESLLKVNRYWLLIQQ-------GDAALKANNLAQAERLYQQARQVDNTD----------SYAVLGLGDVAMAR 398 (1157)
T ss_pred HH-----HHHHHhhhHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHC
Confidence 00 00000 00000000 001113689999999999999999987 78999999999999
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHHH------------------------------------------HHHhhcHH
Q 013948 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAA------------------------------------------YTQIHQYA 229 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~------------------------------------------~~~~~~~~ 229 (433)
|++++|+..|+++++++|++..++..++.+ +...|+++
T Consensus 399 g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~ 478 (1157)
T PRK11447 399 KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWA 478 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHH
Confidence 999999999999999999998776655544 44679999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 013948 230 EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS 309 (433)
Q Consensus 230 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 309 (433)
+|+..|+++++++|+++.+++.+|.++...|++++|+. .++++++.+|+++.+++.++..+...++.++|...+..+..
T Consensus 479 eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~-~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~ 557 (1157)
T PRK11447 479 QAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA-LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPR 557 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999 99999999999999888887776666666666554433211
Q ss_pred -----------------------------------------Cccc-----hhhhhhhcCCCCCCCCCcc--cccCCCCCC
Q 013948 310 -----------------------------------------SHYS-----QESNQSTGGFRSHGTPPSF--TMPFNTNAL 341 (433)
Q Consensus 310 -----------------------------------------~~~~-----~~~~~~~~~~~~~~A~~~~--al~~~p~~~ 341 (433)
.|.. ..+.++...|++++|+..| ++..+|
T Consensus 558 ~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P--- 634 (1157)
T PRK11447 558 AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP--- 634 (1157)
T ss_pred hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Confidence 0111 1245677779999999999 888999
Q ss_pred CccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 342 PTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 342 ~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+++.++..++ .++...|++++|++.++++++..|++
T Consensus 635 --~~~~a~~~la-~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 635 --GNADARLGLI-EVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred --CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 8999999999 89999999999999999999998887
No 7
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=9.5e-22 Score=201.09 Aligned_cols=243 Identities=13% Similarity=-0.026 Sum_probs=197.8
Q ss_pred HHHHHHhhhhCCCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCcc
Q 013948 18 RSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAK 97 (433)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (433)
.++..||++.......+.+.+++|+.+|++|+++||+++.++.. +...+........
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~---La~~~~~~~~~g~-------------------- 313 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCA---LAECYLSMAQMGI-------------------- 313 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHH---HHHHHHHHHHcCC--------------------
Confidence 44567788776677778999999999999999999999733211 1111111100000
Q ss_pred chhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhH
Q 013948 98 FSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNL 177 (433)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 177 (433)
....+++++|+..++++++++|++
T Consensus 314 ----------------------------------------------~~~~~~~~~A~~~~~~Al~ldP~~---------- 337 (553)
T PRK12370 314 ----------------------------------------------FDKQNAMIKAKEHAIKATELDHNN---------- 337 (553)
T ss_pred ----------------------------------------------cccchHHHHHHHHHHHHHhcCCCC----------
Confidence 001478999999999999999998
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+++.++.+++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HcCCHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccC
Q 013948 258 AQGNYNDAIEKGFKKALQLD-PNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF 336 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~ 336 (433)
..|++++|+. ++++++... |+++.++..+|.++..+|+.++|...+.+. +..
T Consensus 418 ~~g~~eeA~~-~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~--------------------------~~~ 470 (553)
T PRK12370 418 YHTGIDDAIR-LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI--------------------------STQ 470 (553)
T ss_pred hccCHHHHHH-HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh--------------------------hhc
Confidence 9999999999 999999875 788999999999999999999998876632 334
Q ss_pred CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 337 NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 337 ~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
.| +...++..++ ..+...|+ +|...+++.+
T Consensus 471 ~~-----~~~~~~~~l~-~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 471 EI-----TGLIAVNLLY-AEYCQNSE--RALPTIREFL 500 (553)
T ss_pred cc-----hhHHHHHHHH-HHHhccHH--HHHHHHHHHH
Confidence 56 7777778888 77777774 5555555543
No 8
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.4e-23 Score=199.90 Aligned_cols=206 Identities=16% Similarity=0.139 Sum_probs=155.5
Q ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 013948 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 157 ~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 236 (433)
.+..++.+|.. ++.|..+|+|+--+++++.|+++|++|+.++|+++.+|..+|.=+.....++.|..+|+
T Consensus 410 aq~Li~~~~~s----------PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 410 AQDLIDTDPNS----------PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHhhCCCC----------cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 44455555555 67777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC-CCccchh
Q 013948 237 KSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS-SSHYSQE 315 (433)
Q Consensus 237 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~ 315 (433)
+|+..+|++..+||.+|.+|.++++++.|.- +|++|++++|.+......+|.++.++|+.++|...+..+. ..+.+..
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~-~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEF-HFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred hhhcCCchhhHHHHhhhhheeccchhhHHHH-HHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 7777777777777777777777777777777 7777777777777777777777777777777777766654 2333222
Q ss_pred -----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 316 -----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 316 -----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
+.++...+++++|+..+ .-++-| +...+++.+| .+|..+|+.+.|+..|.-|+.+||.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP-----~es~v~~llg-ki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVP-----QESSVFALLG-KIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCc-----chHHHHHHHH-HHHHHHccchHHHHhhHHHhcCCCc
Confidence 45555667777777777 666789 9999999999 9999999999999999999999997
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=2.5e-22 Score=208.75 Aligned_cols=286 Identities=10% Similarity=0.013 Sum_probs=156.8
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccC
Q 013948 33 VDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEE 112 (433)
Q Consensus 33 ~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (433)
...+++++|+..|+++++++|++++++...+.++......+.+......... ..|.+.....
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~---------l~P~~~~a~~--------- 148 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL---------AFSGNSQIFA--------- 148 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCcHHHHH---------
Confidence 3578899999999999999999997765555555554545444432111110 1222221111
Q ss_pred CCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc
Q 013948 113 PDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ 192 (433)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~ 192 (433)
.....+.. .|++++|+..+++++...|.+ ..++..++ .+...|
T Consensus 149 -------------~la~~l~~-------------~g~~~eA~~~~~~~~~~~P~~----------~~a~~~~~-~l~~~g 191 (656)
T PRK15174 149 -------------LHLRTLVL-------------MDKELQAISLARTQAQEVPPR----------GDMIATCL-SFLNKS 191 (656)
T ss_pred -------------HHHHHHHH-------------CCChHHHHHHHHHHHHhCCCC----------HHHHHHHH-HHHHcC
Confidence 11111111 355555555555555554443 22332222 244455
Q ss_pred CHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH----HHH
Q 013948 193 QYSDAIELYSFAIALCGN-NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYND----AIE 267 (433)
Q Consensus 193 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~----A~~ 267 (433)
++++|+..+++++..+|. .......++.++...|++++|+..|+++++++|+++.+++.+|.++...|++++ |+.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 555555555555544432 222233344455555555555555555555555555555555555555555543 455
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCC
Q 013948 268 KGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTN 339 (433)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~ 339 (433)
.|+++++++|++..++..+|.++...|++++|...++.+.. .|.... +..+...|++++|+..| ++..+|
T Consensus 272 -~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P- 349 (656)
T PRK15174 272 -HWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG- 349 (656)
T ss_pred -HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-
Confidence 55555555555555555555555555555555554444331 122111 23344445555555555 677788
Q ss_pred CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 340 ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 340 ~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+.+.++..+| .++...|++++|+..|+++++.+|++
T Consensus 350 ----~~~~~~~~~a-~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 350 ----VTSKWNRYAA-AALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred ----cchHHHHHHH-HHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 8777777788 88999999999999999999999995
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=2.9e-21 Score=190.07 Aligned_cols=191 Identities=18% Similarity=0.214 Sum_probs=118.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA-----VYYSNRAAA 221 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~ 221 (433)
.|++++|+..|+++++..|.+ ..++..++.++...|++++|++.+.+++...|.+. ..+..+|.+
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFA----------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcch----------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 355666666666665544433 44555556666666666666666666655555431 234455555
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHh
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-EAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~a 300 (433)
+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+. .+++++..+|.+ ..++..++.++...|+.++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE-ALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666666666666665666666666666666666666 666666555544 23444555555555555555
Q ss_pred cccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 301 TGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
...... ++..+| +...+ ..++ .++...|++++|+..++++++.+|++
T Consensus 269 ~~~l~~--------------------------~~~~~p-----~~~~~-~~la-~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 269 LEFLRR--------------------------ALEEYP-----GADLL-LALA-QLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHH--------------------------HHHhCC-----CchHH-HHHH-HHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 444332 556677 65444 7888 89999999999999999999999998
Q ss_pred c
Q 013948 381 R 381 (433)
Q Consensus 381 ~ 381 (433)
.
T Consensus 316 ~ 316 (389)
T PRK11788 316 R 316 (389)
T ss_pred H
Confidence 3
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.7e-21 Score=202.52 Aligned_cols=285 Identities=10% Similarity=-0.005 Sum_probs=226.3
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|...++.++...|+.++++...+.+.......+.+......... .+|.+...
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~---------~~P~~~~a------------ 112 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLA---------VNVCQPED------------ 112 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHH---------hCCCChHH------------
Confidence 557899999999999999999997766555554444444444331100000 12222211
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
+..+...+. ..|++++|+..+++++...|.+ ..++..+|.++...|+
T Consensus 113 ----------~~~la~~l~-------------~~g~~~~Ai~~l~~Al~l~P~~----------~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 113 ----------VLLVASVLL-------------KSKQYATVADLAEQAWLAFSGN----------SQIFALHLRTLVLMDK 159 (656)
T ss_pred ----------HHHHHHHHH-------------HcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHCCC
Confidence 111122222 2689999999999999998887 8889999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKK 272 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 272 (433)
+++|+..+.+++...|++..++..++ .+...|++++|+..+++++..+|. .......++.++...|++++|+. .|++
T Consensus 160 ~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~-~~~~ 237 (656)
T PRK15174 160 ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ-TGES 237 (656)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH-HHHH
Confidence 99999999999999999988887764 478899999999999999998763 44455667889999999999999 9999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHH----hcccccccC-CCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCC
Q 013948 273 ALQLDPNNEAVKENIRMAEQKLREERQ----RTGWDQTTS-SSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNA 340 (433)
Q Consensus 273 al~~~p~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~ 340 (433)
+++.+|+++.++..+|.++...|++++ |...++.+. ..|.... +..+...|++++|+..+ ++..+|
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-- 315 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-- 315 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999999875 677766665 3333322 56788889999999999 999999
Q ss_pred CCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 341 LPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 341 ~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+++.++..+| .++...|++++|+..|+++++.+|++
T Consensus 316 ---~~~~a~~~La-~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 316 ---DLPYVRAMYA-RALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred ---CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999 99999999999999999999999998
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=4.8e-21 Score=211.69 Aligned_cols=217 Identities=17% Similarity=0.159 Sum_probs=191.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH------------
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV------------ 213 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------------ 213 (433)
..|++++|+..|+++++.+|.+ ..++..+|.++...|++++|+..|+++++.+|++..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~----------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKD----------SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 3689999999999999999987 899999999999999999999999999999998642
Q ss_pred --HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 214 --YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 214 --~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
....+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+. +|+++++++|++..++..++.++
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 224568899999999999999999999999999999999999999999999999 99999999999999999999988
Q ss_pred HHHHHHHHhcccccccCCCc---------------cchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhh
Q 013948 292 QKLREERQRTGWDQTTSSSH---------------YSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMAS 354 (433)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~ 354 (433)
.. ++.++|..+........ ....+..+...|++++|+..| ++..+| +++.+++.+|
T Consensus 430 ~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-----~~~~~~~~LA- 502 (1157)
T PRK11447 430 RQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-----GSVWLTYRLA- 502 (1157)
T ss_pred Hh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHH-
Confidence 54 45677776655432111 011245577789999999999 999999 9999999999
Q ss_pred cccccCCChhhHHHHHhhhcCCCCCc
Q 013948 355 NMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.++..+|++++|+..++++++++|++
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999998
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.86 E-value=7.1e-21 Score=205.80 Aligned_cols=324 Identities=15% Similarity=0.075 Sum_probs=227.1
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|+++|+++++++|++..++...+.++......+.+......... ..|.+......+...+..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~l~~~~~~-- 545 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT---------IDPKNLRAILALAGLYLR-- 545 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------hCcCcHHHHHHHHHHHHH--
Confidence 567899999999999999999986554444443333333333221100000 122222221111111111
Q ss_pred CCCCCChhHHHHHHHHHHHhhh----hhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Q 013948 114 DSTGVSKDELFGQFFAALEKFH----YFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM 189 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~ 189 (433)
.| ...+....+.+.+...+ .+..........|++++|+..+++++...|.+ ...|..+|.++.
T Consensus 546 --~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~ 612 (899)
T TIGR02917 546 --TG-NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS----------PEAWLMLGRAQL 612 (899)
T ss_pred --cC-CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHH
Confidence 01 11122222222211110 00011111123688889999999888877766 778888999999
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+. .
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~ 691 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK-I 691 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999998899999999999999999998 8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-Cccch----hhhhhhcCCCCCCCCCcc--cccCCCCCCC
Q 013948 270 FKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQ----ESNQSTGGFRSHGTPPSF--TMPFNTNALP 342 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~~~~~~~~~~A~~~~--al~~~p~~~~ 342 (433)
++.+....|.++..+..++.++...|++++|...+..+.. .+... .+..+...|++++|+..+ .+..+|
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~---- 767 (899)
T TIGR02917 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP---- 767 (899)
T ss_pred HHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----
Confidence 8888888888888888889888888888888888776652 22221 245677778888888888 788888
Q ss_pred ccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccccccc
Q 013948 343 TDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINL 388 (433)
Q Consensus 343 ~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~ 388 (433)
++..++..+| .++..+|++++|+..|+++++.+|++ ....++..
T Consensus 768 -~~~~~~~~la-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 812 (899)
T TIGR02917 768 -NDAVLRTALA-ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW 812 (899)
T ss_pred -CCHHHHHHHH-HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888888888 88888888888888888888888888 44444443
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.86 E-value=7.4e-21 Score=205.70 Aligned_cols=343 Identities=11% Similarity=0.052 Sum_probs=246.9
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|+.++++.++..|+++..+...+.++.....++.+......... ..|.+......+...+..
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~~~~la~~~~~-- 511 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS---------IEPDFFPAAANLARIDIQ-- 511 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh---------hCCCcHHHHHHHHHHHHH--
Confidence 567899999999999999999987666666666655555555443211110 223222221111111100
Q ss_pred CCCCCChhHHHHHHHHHHHhhh----hhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Q 013948 114 DSTGVSKDELFGQFFAALEKFH----YFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM 189 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~ 189 (433)
.| ........+...+...+ .+..........|++++|+..+++++..+|.+ ...+..++.++.
T Consensus 512 --~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~ 578 (899)
T TIGR02917 512 --EG-NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE----------IEPALALAQYYL 578 (899)
T ss_pred --CC-CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----------hhHHHHHHHHHH
Confidence 00 11222222222222111 11111111123578899999999998887776 678888999999
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
..|++++|+..+++++...|.+..+|..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+. +
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~ 657 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT-S 657 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCC
Q 013948 270 FKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNAL 341 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~ 341 (433)
|+++++.+|++..++..++.++...|++++|......... .+... .+..+...|++++|+..| ++...|
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--- 734 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--- 734 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---
Confidence 9999999999999999999999999999998887766542 22221 256678889999999999 888888
Q ss_pred CccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHhh
Q 013948 342 PTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMMEM 408 (433)
Q Consensus 342 ~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~~ 408 (433)
+. ..+..++ .++...|++++|+..++++++.+|++ .....+...+. ..+.++....++.+.+.
T Consensus 735 --~~-~~~~~l~-~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 735 --SS-QNAIKLH-RALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred --Cc-hHHHHHH-HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 55 6777888 89999999999999999999999998 33333332221 34555555555555543
No 15
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=4.4e-20 Score=174.05 Aligned_cols=220 Identities=14% Similarity=0.050 Sum_probs=176.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.+..+.++..+.++|...|.+ +...+..|+.+|.++...|++++|+..|+++++++|+++.+|+++|.++...|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLT------DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG 112 (296)
T ss_pred chHHHHHHHHHHHHHccccCC------cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 367788999999999755433 23447889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|++..++.++|.++...|++++|+. .|+++++++|+++.....+ .+....++.++|...+..
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~-~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD-DLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999999998432222 223345667777777644
Q ss_pred cC-C-Cccch-hhhhhhcCCCCCCC--C----Ccc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 307 TS-S-SHYSQ-ESNQSTGGFRSHGT--P----PSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 307 ~~-~-~~~~~-~~~~~~~~~~~~~A--~----~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
.. . .+..+ ....+...|++.++ + +.+ .+..+| ..+++|+++| .++..+|++++|+.+|+++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~-----~~~ea~~~Lg-~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 191 RYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAE-----RLCETYFYLA-KYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHH-----HHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHH
Confidence 32 1 12211 12333344555443 2 222 345566 7889999999 999999999999999999999
Q ss_pred CCCCc
Q 013948 376 DEPGI 380 (433)
Q Consensus 376 l~P~~ 380 (433)
++|.+
T Consensus 265 ~~~~~ 269 (296)
T PRK11189 265 NNVYN 269 (296)
T ss_pred hCCch
Confidence 99754
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.8e-20 Score=180.17 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=140.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..++|+|..+|++||..+|.+ ..+||.+|.+|.++++++.|.-+|++|+.++|.+..+...+|.++.++|
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rh----------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k 537 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRH----------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLK 537 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchh----------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhh
Confidence 468999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
+.++|+..|++|+.++|.++-..+..|.+++.++++++|+. .+++.-++-|++..++..+|.+|..+|+.+.|...+
T Consensus 538 ~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~-~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 538 RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ-ELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH-HHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 99999999999999999999999999999999999999999 999999999999999999999999999988776653
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=2.9e-19 Score=190.39 Aligned_cols=189 Identities=15% Similarity=0.070 Sum_probs=161.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++...|. ...++.+|.++...|++++|+.+|++++..+|.+...+..++..+...|
T Consensus 522 ~Gr~eeAi~~~rka~~~~p~-----------~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 522 VEDYATALAAWQKISLHDMS-----------NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred CCCHHHHHHHHHHHhccCCC-----------cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 58899999999987665443 2346788888889999999999999999998888888777777777779
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|+ +.++..+|.++.++|++++|+. +|++++.++|+++.++.++|.++...|++++|...+..
T Consensus 591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~-~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVS-DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999996 8889999999999999999999 99999999999999999999999888888887776553
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
++..+| +++.+++++| .++..+|++++|+..|+++++++|++
T Consensus 669 --------------------------AL~l~P-----~~~~a~~nLA-~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 669 --------------------------AHKGLP-----DDPALIRQLA-YVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred --------------------------HHHhCC-----CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 567788 8888999999 88999999999999999999999987
No 18
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.3e-19 Score=169.20 Aligned_cols=196 Identities=15% Similarity=0.171 Sum_probs=175.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++.++|+.+|+++++++|.. ..+|..+|.-|...++-..|++.|++|++++|.|..+|+.+|++|.-++
T Consensus 343 r~eHEKAv~YFkRALkLNp~~----------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKY----------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcch----------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 478999999999999999887 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
.+.=|+-+|++|+.+.|.++..|..||.||.++++.++|+. +|.+++.....+..++..||..|..+++..+|..++.+
T Consensus 413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999988775
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
...... . .-..+| +...+..-++ ..+...+++++|-.+..+++.-+|
T Consensus 492 ~v~~~~-~------------------eg~~~~-----~t~ka~~fLA-~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 492 YVEVSE-L------------------EGEIDD-----ETIKARLFLA-EYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHH-h------------------hcccch-----HHHHHHHHHH-HHHHhhcchHHHHHHHHHHhcCCc
Confidence 332110 0 122455 6677777799 999999999999988877765433
No 19
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=4.8e-19 Score=181.23 Aligned_cols=191 Identities=13% Similarity=0.044 Sum_probs=171.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhcCCCHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---------QQYSDAIELYSFAIALCGNNAVYYSN 217 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~ 217 (433)
.+++++|+.+|+++++++|.+ +.++..+|.++... +++++|+..++++++++|+++.++..
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~----------a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~ 343 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNS----------IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGL 343 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCcc----------HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 367889999999999999987 88888888877633 44899999999999999999999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+. +++++++++|.++.....++.++...|++
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~-~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ-TINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 99999999999999999999999999999999999999999999999999 99999999999988877777777778888
Q ss_pred HHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccC-CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 298 RQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF-NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~-~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
++|..++++ ++.. .| +.+.++..+| .++..+|++++|...+++....
T Consensus 423 eeA~~~~~~--------------------------~l~~~~p-----~~~~~~~~la-~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 423 DDAIRLGDE--------------------------LRSQHLQ-----DNPILLSMQV-MFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHH--------------------------HHHhccc-----cCHHHHHHHH-HHHHhCCCHHHHHHHHHHhhhc
Confidence 888777653 2333 36 7888899999 9999999999999999999888
Q ss_pred CCCc
Q 013948 377 EPGI 380 (433)
Q Consensus 377 ~P~~ 380 (433)
.|+.
T Consensus 471 ~~~~ 474 (553)
T PRK12370 471 EITG 474 (553)
T ss_pred cchh
Confidence 8887
No 20
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.1e-18 Score=154.15 Aligned_cols=120 Identities=54% Similarity=0.935 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
++.+...|+-++..++|.+|+..|.+||.++|.++.+|.++|.+|.++|.++.|++.++.+|.++|.+..+|.+||.+|+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
.+|++++|++ .|+++|+++|++...+.+|..+..++++..
T Consensus 161 ~~gk~~~A~~-aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIE-AYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHH-HHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999 999999999999999999998887776655
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=1.7e-18 Score=184.59 Aligned_cols=191 Identities=16% Similarity=0.149 Sum_probs=177.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+.+++++++..|.. ...+..++......|++++|+..|++++.++|+ ..+++++|.++.++|
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~----------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG 623 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGD----------NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH 623 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCcc----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC
Confidence 689999999999999987765 555666777777889999999999999999996 999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|++++.++|+++.++.++|.++...|++++|+. .|+++++++|+++.++.++|.++..+|++++|...++.
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~-~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE-MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999998887663
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcc
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIR 381 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~ 381 (433)
++.++| +.+......| .+.....+++.|.+.|+++...+|+..
T Consensus 703 --------------------------Al~l~P-----~~a~i~~~~g-~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 703 --------------------------VIDDID-----NQALITPLTP-EQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred --------------------------HHhcCC-----CCchhhhhhh-HHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 677889 9999999999 899999999999999999999999984
No 22
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.80 E-value=1.1e-18 Score=157.46 Aligned_cols=295 Identities=11% Similarity=0.048 Sum_probs=215.8
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCCC
Q 013948 35 LEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPD 114 (433)
Q Consensus 35 ~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 114 (433)
.+++-.|+..|..|++.||++..+++.++..|..+..-..+..... ..+.+.+.+.-+..
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~--------------------rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLS--------------------RVLELKPDFMAARI 110 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHH--------------------HHHhcCccHHHHHH
Confidence 4568899999999999999998666655555555444433333110 01112111111111
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccch-----hhHHHHHHHHHHHHH
Q 013948 115 STGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQ-----KNLAEIFKCQGNRVM 189 (433)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~~~~~~lg~~~~ 189 (433)
-+ +......|++++|+.-|..+|+.+|.++...... ....+.+......++
T Consensus 111 QR------------------------g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~ 166 (504)
T KOG0624|consen 111 QR------------------------GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSAS 166 (504)
T ss_pred Hh------------------------chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 11 1112237999999999999999998764322111 112233344445567
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
..|++..|++.....|++.|-++..+..++.||...|++..||..++.+-++..++.+.++.++.+++..|+.+.++. .
T Consensus 167 ~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~-~ 245 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK-E 245 (504)
T ss_pred cCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH-H
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhCCCCHHHHH---HHHHHHHHHHH---------HHHhcccccccCC-Cccchh---------hhhhhcCCCCCC
Q 013948 270 FKKALQLDPNNEAVKE---NIRMAEQKLRE---------ERQRTGWDQTTSS-SHYSQE---------SNQSTGGFRSHG 327 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~---~l~~~~~~~~~---------~~~a~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~ 327 (433)
.+.+|+++|+....+- .+..+-..+.. |.+.....++... .|.... -..|...+++.+
T Consensus 246 iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 246 IRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 9999999999755433 33333222222 3333333333332 222111 133566699999
Q ss_pred CCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 328 TPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 328 A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
|+..+ ++.++| +++.++..++ .+|.-...|++|+.+|++|.+.+|++
T Consensus 326 AiqqC~evL~~d~-----~dv~~l~dRA-eA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 326 AIQQCKEVLDIDP-----DDVQVLCDRA-EAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHhcCc-----hHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 99999 999999 9999999999 99999999999999999999999999
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=7.4e-19 Score=165.16 Aligned_cols=215 Identities=15% Similarity=0.089 Sum_probs=194.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
|+.-.|...|+++|.++|.. ...|..+|..|...++.++-...|.+|.+++|+++++|+.+|.+++-+++
T Consensus 340 g~~~~a~~d~~~~I~l~~~~----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAF----------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred CCchhhhhhHHHHHhcCccc----------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence 88889999999999999886 45599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+++|+..|+++++++|++..++..++.+.+++++++++.. .|+.+.+..|+.++++...+.++...+++++|.+.+..+
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~-~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK-TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999998877
Q ss_pred CCCccchh-------------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhh
Q 013948 308 SSSHYSQE-------------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNV 372 (433)
Q Consensus 308 ~~~~~~~~-------------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~ 372 (433)
........ .......+++..|+..+ |+++|| ..-.++..|| .+..++|+.++|++.|++
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp-----kce~A~~tla-q~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP-----KCEQAYETLA-QFELQRGKIDEAIELFEK 562 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc-----hHHHHHHHHH-HHHHHHhhHHHHHHHHHH
Confidence 63222211 11233448999999999 999999 9999999999 999999999999999999
Q ss_pred hcCCCCC
Q 013948 373 SGSDEPG 379 (433)
Q Consensus 373 al~l~P~ 379 (433)
++.+.-.
T Consensus 563 sa~lArt 569 (606)
T KOG0547|consen 563 SAQLART 569 (606)
T ss_pred HHHHHHh
Confidence 9765433
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=4.7e-18 Score=180.28 Aligned_cols=245 Identities=9% Similarity=-0.040 Sum_probs=181.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHH----------------------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI---------------------------- 198 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~---------------------------- 198 (433)
.|++++|+..+++++...|.+ ..++..+|.++...+..++|+
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~----------~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQT----------QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999998887 778888888877666655444
Q ss_pred ------------------HHHHHHHHhcCCCHH-------HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH-HHHHHH
Q 013948 199 ------------------ELYSFAIALCGNNAV-------YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-KAYSRL 252 (433)
Q Consensus 199 ------------------~~~~~al~~~p~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l 252 (433)
..+++++...|.++. +++.+..++...|++++|+..|+++++..|..+ .+...+
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l 278 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV 278 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 444444443233221 122212234677999999999999999864422 344446
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHHHHHHHhcccccccCCC-c-------------c-c
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQLDPNN----EAVKENIRMAEQKLREERQRTGWDQTTSSS-H-------------Y-S 313 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------------~-~ 313 (433)
|.++..+|++++|+. +|+++++.+|.+ ......++.++...|++++|...+..+... | . .
T Consensus 279 a~~yl~~g~~e~A~~-~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 279 ASAYLKLHQPEKAQS-ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHhcCCcHHHHH-HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 999999999999999 999999988876 456777888888999999998886655432 2 1 1
Q ss_pred ------hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccc
Q 013948 314 ------QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGG 384 (433)
Q Consensus 314 ------~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~ 384 (433)
..+..+...|++++|+..+ ++...| +++.++..+| .++...|++++|+..++++++++|++ .+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-----~n~~l~~~lA-~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-----GNQGLRIDYA-SVLQARGWPRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 1245677779999999999 899999 9999999999 99999999999999999999999998 3332
Q ss_pred cccc-ccccCCcHHHHHHHHHHHhh
Q 013948 385 NINL-NFGENMPEDITGALRSMMEM 408 (433)
Q Consensus 385 ~~~~-~l~~~~~~~~~~a~~~~~~~ 408 (433)
.... .+...+.++....++.+.+.
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2222 22235566666666666544
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=5.6e-18 Score=166.66 Aligned_cols=218 Identities=12% Similarity=0.052 Sum_probs=189.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 222 (433)
.|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..+++++...+.. ..++..+|.+|
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPET----------VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred cCChHHHHHHHHHHHhcCccc----------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999998876 7899999999999999999999999998753332 35789999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE-----AVKENIRMAEQKLREE 297 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~ 297 (433)
...|++++|+..|+++++.+|.+..++..++.++...|++++|+. .++++++..|.+. ..+..++.++...|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAID-VAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHH-HHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999 9999999888753 2566788888899999
Q ss_pred HHhcccccccCC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccH-HHHHHHHhhcccccCCChhhHHH
Q 013948 298 RQRTGWDQTTSS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDI-ASMLMNMASNMPQAQPSQSRQGE 368 (433)
Q Consensus 298 ~~a~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~-~~a~~~la~~~~~~~g~~~~A~~ 368 (433)
++|...+..+.. .+... .+..|...|++++|+..| ++..+| +. ..++..++ .++...|++++|+.
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~~l~-~~~~~~g~~~~A~~ 270 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP-----EYLSEVLPKLM-ECYQALGDEAEGLE 270 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-----hhHHHHHHHHH-HHHHHcCCHHHHHH
Confidence 999998777653 22222 256788889999999999 787788 54 56778888 99999999999999
Q ss_pred HHhhhcCCCCCcc
Q 013948 369 DSNVSGSDEPGIR 381 (433)
Q Consensus 369 ~~~~al~l~P~~~ 381 (433)
.++++++.+|+..
T Consensus 271 ~l~~~~~~~p~~~ 283 (389)
T PRK11788 271 FLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHhCCCch
Confidence 9999999999873
No 26
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.4e-18 Score=162.78 Aligned_cols=203 Identities=13% Similarity=0.087 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+-.|+..|..|+..|++.+|.++|.++..++|....+|...|..+...|..++|+.+|..|-++-|......+.+|.-|.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM 391 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-----Cc--------cchhhhhhhcCCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-----SH--------YSQESNQSTGGFR 324 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--------~~~~~~~~~~~~~ 324 (433)
+.++++-|.. .|.+|+.+.|++|-++..+|.+....+.+.+|..+++.+.. .+ ....+..|...++
T Consensus 392 ~t~n~kLAe~-Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEK-FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHH-HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 6666666666 66666666666666666666666666666666665544430 00 0111344555566
Q ss_pred CCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcccccccc
Q 013948 325 SHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNIN 387 (433)
Q Consensus 325 ~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~ 387 (433)
+++|+..| ++.+.| .++.++-.+| -++..+|+.+.|+..|.+||.++|++.....++
T Consensus 471 ~~eAI~~~q~aL~l~~-----k~~~~~asig-~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSP-----KDASTHASIG-YIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHHHHHHcCC-----CchhHHHHHH-HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 66666666 899999 9999999999 999999999999999999999999995554444
No 27
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.5e-17 Score=156.12 Aligned_cols=170 Identities=20% Similarity=0.287 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH------------------------------------
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA------------------------------------ 220 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------------------------------ 220 (433)
.+.....+|+..+...++..|+.+|..++.++ .+...+.+.+-
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999998 65544444444
Q ss_pred -----HHHHhhcHHHHHHHHHHHHhc--------------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 221 -----AYTQIHQYAEAVRDCLKSIDI--------------------------DPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 221 -----~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
.|.+.++++.|+.+|.+++.- +|.-..--...|..++..|+|..|+. +
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~-~ 380 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK-H 380 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH-H
Confidence 445555666666666665543 23333344456888888888888888 8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHH
Q 013948 270 FKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASML 349 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~ 349 (433)
|.++++.+|+++..+.+.+.||.+++.+..+...... +++++| +...+|
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~--------------------------~ieL~p-----~~~kgy 429 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKK--------------------------CIELDP-----NFIKAY 429 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHH--------------------------HHhcCc-----hHHHHH
Confidence 8888888888888888888888888888877665331 688899 999999
Q ss_pred HHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 350 MNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 350 ~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
...| .++..+.+|++|++.|..++++||++
T Consensus 430 ~RKg-~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 430 LRKG-AALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 9999 99999999999999999999999998
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=3e-18 Score=160.84 Aligned_cols=255 Identities=16% Similarity=0.150 Sum_probs=113.1
Q ss_pred CCchhHHHHHHHHHHhh-cC-CCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccc
Q 013948 33 VDLEGLEVARECLTEVF-KL-DSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWT 110 (433)
Q Consensus 33 ~~~~~~e~A~~~~~kAl-~l-dP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (433)
...+++++|++++.+++ .. +|++++.+...+.|......++.+.........
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-------------------------- 72 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-------------------------- 72 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------------------
Confidence 46678999999997665 55 588887777777777777777776663211110
Q ss_pred cCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Q 013948 111 EEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ 190 (433)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~ 190 (433)
.+......+..+... ...+++++|+.++.++.+..+. +..+.....++..
T Consensus 73 -----~~~~~~~~~~~l~~l--------------~~~~~~~~A~~~~~~~~~~~~~-----------~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 73 -----SDKANPQDYERLIQL--------------LQDGDPEEALKLAEKAYERDGD-----------PRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred -----ccccccccccccccc--------------cccccccccccccccccccccc-----------cchhhHHHHHHHH
Confidence 000000111111111 1257888888888888776543 4456666677888
Q ss_pred ccCHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 191 SQQYSDAIELYSFAIALC--GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
.++++++...+.++.... +.++.+|..+|.++.+.|++++|+.+|+++++++|+++.+...++.++...|+++++..
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~- 201 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE- 201 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH-
Confidence 899999999988877654 67788899999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHH
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASM 348 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a 348 (433)
.+....+..|.++..+..+|.++..+|+.++|..++.+ ++..+| +++..
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~--------------------------~~~~~p-----~d~~~ 250 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK--------------------------ALKLNP-----DDPLW 250 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH--------------------------HHHHST-----T-HHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc--------------------------cccccc-----ccccc
Confidence 88888888888888888999999999999988888663 456688 88899
Q ss_pred HHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 349 LMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 349 ~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
+..+| .++...|+.++|...+++++..
T Consensus 251 ~~~~a-~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 251 LLAYA-DALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHH-HHHT------------------
T ss_pred ccccc-cccccccccccccccccccccc
Confidence 99999 9999999999999988887653
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=7.4e-17 Score=145.86 Aligned_cols=189 Identities=14% Similarity=0.124 Sum_probs=162.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..++++++.+|.+ ..++..+|.++...|++++|+..|++++...|.+..+++++|.++...|
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDD----------YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113 (234)
T ss_pred CCCHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 589999999999999988776 7888899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSIDID--PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
++++|+..+++++... |.....+..+|.++...|++++|.. .+.+++..+|+++.++..++.++...|++++|...+
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK-YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999864 4567788899999999999999999 999999999999999999999999999999888776
Q ss_pred cccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 305 QTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
.. ++...| ..+..+..++ .++...|+.++|....+.+....|
T Consensus 193 ~~--------------------------~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 193 ER--------------------------YQQTYN-----QTAESLWLGI-RIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HH--------------------------HHHhCC-----CCHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhhCc
Confidence 63 223356 6667777788 888889999999988877765544
No 30
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.74 E-value=1.1e-16 Score=134.07 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHH
Q 013948 154 SRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR 233 (433)
Q Consensus 154 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 233 (433)
..++++++..+|.+ ++.+|.++...|++++|+..|++++..+|.+..+|+++|.++...|++++|+.
T Consensus 13 ~~~~~~al~~~p~~-------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 13 EDILKQLLSVDPET-------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHcCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 46789999998753 55689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 234 DCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 234 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.|+++++++|+++.+++++|.++..+|++++|+. .|++++++.|+++..+.+++.+...++.
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~-~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE-AFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999999999999988876643
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-16 Score=149.82 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=170.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhcccc--ccc----------------------hhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAH--AYN----------------------QKNLAEIFKCQGNRVMQSQQYSDAIELY 201 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~--~~~----------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 201 (433)
...|+++|+..|+...+.+|-.-.. .+. +.-.++....+|+.|-..++.++|+.+|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 4589999999999999987764211 110 0011222234566777788999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 202 SFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 202 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
++|+++||....+|..+|.=|..+++...|++.|++|++++|.+..+|+.+|++|--++.+.=|+- +|++|+++.|+|+
T Consensus 354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLy-YfqkA~~~kPnDs 432 (559)
T KOG1155|consen 354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALY-YFQKALELKPNDS 432 (559)
T ss_pred HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHH-HHHHHHhcCCCch
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC
Q 013948 282 AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP 361 (433)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g 361 (433)
..|..||.||.++++.++|+.++..+. ...- -...++..+| .+|.+++
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai--------------------------~~~d-----te~~~l~~La-kLye~l~ 480 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAI--------------------------LLGD-----TEGSALVRLA-KLYEELK 480 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH--------------------------hccc-----cchHHHHHHH-HHHHHHH
Confidence 999999999999999999999988533 3333 4457899999 9999999
Q ss_pred ChhhHHHHHhhhcC
Q 013948 362 SQSRQGEDSNVSGS 375 (433)
Q Consensus 362 ~~~~A~~~~~~al~ 375 (433)
+..+|..+|++-++
T Consensus 481 d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999887
No 32
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=2.3e-16 Score=141.78 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=202.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
+|-+.+|.+.++..|...|. ++.+..++.+|.+..+...|+..|.+.++..|.+...+..++.++..++
T Consensus 236 Lgm~r~AekqlqssL~q~~~-----------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQFPH-----------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred hcChhhhHHHHHHHhhcCCc-----------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 68889999999999998775 7889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|++.|+.+++++|.+.++.--+|.-|+.-++.+-|+. +|++.|++.-.+++.+.++|.|+..-++++-+...++.
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr-yYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR-YYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH-HHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999888877
Q ss_pred cCCC---ccchhhhhhhcC------CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 307 TSSS---HYSQESNQSTGG------FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 307 ~~~~---~~~~~~~~~~~~------~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
+... +....-.||+.+ |++..|-..| ++..|| ++.+++.++| .+-...|+.++|...+..|-.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-----~h~ealnNLa-vL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-----QHGEALNNLA-VLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-----chHHHHHhHH-HHHhhcCchHHHHHHHHHhhh
Confidence 7643 333335677666 9999999999 999999 9999999999 888889999999999999999
Q ss_pred CCCCc-ccccccc
Q 013948 376 DEPGI-RIGGNIN 387 (433)
Q Consensus 376 l~P~~-~~~~~~~ 387 (433)
..|+. ....|+.
T Consensus 458 ~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 458 VMPDMAEVTTNLQ 470 (478)
T ss_pred hCcccccccccee
Confidence 99987 5555554
No 33
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=9.2e-17 Score=151.47 Aligned_cols=206 Identities=10% Similarity=0.009 Sum_probs=172.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.+..++|+..+.++|+++|.+ ..+|..++.++...| ++++++..+.+++..+|++..+|+.++.++.++
T Consensus 50 ~e~serAL~lt~~aI~lnP~~----------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGN----------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchh----------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc
Confidence 578899999999999999998 899999999999998 689999999999999999999999999999999
Q ss_pred hcH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 013948 226 HQY--AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 226 ~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
++. ++++.+++++++.+|++..+|..+|.++...|+|++++. ++.++|+.+|.+..+|...+.+...++....-...
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~-~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELE-YCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 874 788999999999999999999999999999999999999 99999999999999999999887765321000000
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc----CCChhhHHHHHhhhcCCC
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA----QPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~----~g~~~~A~~~~~~al~l~ 377 (433)
.++.+... +|..+| ++..+|..++ .++.. +++..+|...+..++..+
T Consensus 199 ---------------------~e~el~y~~~aI~~~P-----~N~SaW~Yl~-~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 199 ---------------------RDSELKYTIDAILANP-----RNESPWRYLR-GLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred ---------------------HHHHHHHHHHHHHhCC-----CCcCHHHHHH-HHHhcCCcccccchhHHHHHHHhhccc
Confidence 00111222 788999 9999999999 78877 456678999999999988
Q ss_pred CCccccccccccc
Q 013948 378 PGIRIGGNINLNF 390 (433)
Q Consensus 378 P~~~~~~~~~~~l 390 (433)
|.+...-.++..+
T Consensus 252 ~~s~~al~~l~d~ 264 (320)
T PLN02789 252 SNHVFALSDLLDL 264 (320)
T ss_pred CCcHHHHHHHHHH
Confidence 8884443334333
No 34
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=4.5e-16 Score=146.80 Aligned_cols=170 Identities=11% Similarity=0.137 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQY--SDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
++++++..+.+++..+|++ ..+|..++.++...|+. ++++.++.++++.+|++..+|..++.++...|
T Consensus 87 ~l~eeL~~~~~~i~~npkn----------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKN----------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred hHHHHHHHHHHHHHHCCcc----------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh
Confidence 6789999999999999998 88999999998888874 78899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ---GNY----NDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
+++++++++.++|+.+|.+..+|..++.++... |.+ ++++. +..+++.++|++..+|..++.++...+..
T Consensus 157 ~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~-y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~-- 233 (320)
T PLN02789 157 GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK-YTIDAILANPRNESPWRYLRGLFKDDKEA-- 233 (320)
T ss_pred hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH-HHHHHHHhCCCCcCHHHHHHHHHhcCCcc--
Confidence 999999999999999999999999999999876 333 46788 88899999999999999999888642110
Q ss_pred hcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc
Q 013948 300 RTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA 359 (433)
Q Consensus 300 a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~ 359 (433)
.++..+++..+ ++..+| ..+.++--++ .++..
T Consensus 234 ----------------------l~~~~~~~~~~~~~~~~~~-----~s~~al~~l~-d~~~~ 267 (320)
T PLN02789 234 ----------------------LVSDPEVSSVCLEVLSKDS-----NHVFALSDLL-DLLCE 267 (320)
T ss_pred ----------------------cccchhHHHHHHHhhcccC-----CcHHHHHHHH-HHHHh
Confidence 01111233333 566778 8888888888 88875
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=2.7e-16 Score=166.92 Aligned_cols=186 Identities=11% Similarity=-0.001 Sum_probs=104.2
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNA-VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY----SKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~ 263 (433)
+..|++++|+..|+++++..|..+ .+...+|.+|..+|++++|+..|++++..+|.+ ......++.++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 344555555555555544432211 112223445555555555555555555444433 233444444445555555
Q ss_pred HHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHHHHHHHhcccccccC-CCccchh-----hhhhhcC
Q 013948 264 DAIEKGFKKALQLDPN---------------NEAVKENIRMAEQKLREERQRTGWDQTTS-SSHYSQE-----SNQSTGG 322 (433)
Q Consensus 264 ~A~~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~-----~~~~~~~ 322 (433)
+|+. .++++....|. ...++..++.++...|+.++|+..+..+. ..|.+.. +..+...
T Consensus 328 eA~~-~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALT-VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHH-HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 5555 55555544431 12234444555555555555555444433 1222211 2334444
Q ss_pred CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcc
Q 013948 323 FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIR 381 (433)
Q Consensus 323 ~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~ 381 (433)
|++++|+..+ ++.++| ++..+++.+| .++..+|++++|+..++++++.+|++.
T Consensus 407 g~~~~A~~~l~~al~l~P-----d~~~l~~~~a-~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 407 GWPRAAENELKKAEVLEP-----RNINLEVEQA-WTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CCHHHHHHHHHHHHhhCC-----CChHHHHHHH-HHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 5555555555 788999 9999999999 899999999999999999999999983
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=4.5e-16 Score=140.70 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.+..++.+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccc
Q 013948 257 YAQGNYNDAIEKGFKKALQLD--PNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTM 334 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al 334 (433)
...|++++|+. .+++++... |.....+..++.++...|++++|...+.. ++
T Consensus 110 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------------------------~~ 162 (234)
T TIGR02521 110 CQQGKYEQAMQ-QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR--------------------------AL 162 (234)
T ss_pred HHcccHHHHHH-HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------HH
Confidence 99999999999 999999854 55677889999999999999988877653 45
Q ss_pred cCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 335 PFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 335 ~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..+| +++.++..+| .++...|++++|...+++++...|.+
T Consensus 163 ~~~~-----~~~~~~~~la-~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 163 QIDP-----QRPESLLELA-ELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred HhCc-----CChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6678 7888999999 99999999999999999999997776
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=8e-17 Score=162.59 Aligned_cols=319 Identities=15% Similarity=0.091 Sum_probs=225.6
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHh-hhhhHhhhh---cccCCCCCCCCcccCCCccchhhhcccCccc
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIF-NSQQASDAL---GIKSDNAPSSSSAQNMDAKFSEASKSMGEDW 109 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (433)
-.+.++.|+.||++.++..|++.+.+.+.|+|+... ........+ ..+... ..|.++...+.+
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~---------~~~~d~~a~l~l---- 420 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE---------QTPVDSEAWLEL---- 420 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh---------cccccHHHHHHH----
Confidence 445677888888888888888887777777777776 222222221 000000 112222222221
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Q 013948 110 TEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM 189 (433)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~ 189 (433)
.+.+. .++.-.++.+|.+|+...-....+ --++.++++|..++
T Consensus 421 ------------------aql~e--------------~~d~~~sL~~~~~A~d~L~~~~~~-----ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 421 ------------------AQLLE--------------QTDPWASLDAYGNALDILESKGKQ-----IPPEVLNNVASLHF 463 (1018)
T ss_pred ------------------HHHHH--------------hcChHHHHHHHHHHHHHHHHcCCC-----CCHHHHHhHHHHHH
Confidence 11111 356666788888888765444322 12788999999999
Q ss_pred HccCHHHHHHHHHHHHHh-----cCC-----CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 190 QSQQYSDAIELYSFAIAL-----CGN-----NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
..|++.+|...|.+|+.. +++ +...-||+|.|+..+++++.|.+.|..+++..|.+..++.++|.+....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 999999999999999877 222 2346899999999999999999999999999999999999999888889
Q ss_pred CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCc------cch--hhhhhhcC---------
Q 013948 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSH------YSQ--ESNQSTGG--------- 322 (433)
Q Consensus 260 g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~--~~~~~~~~--------- 322 (433)
++..+|.. +++.++..+..++.+|..+|.++.....+..+...+......+ ... .+++|...
T Consensus 544 ~~~~ea~~-~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASL-LLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHH-HHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 99999999 9999999999999999999999999999888877544332111 111 13433322
Q ss_pred ---CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCc
Q 013948 323 ---FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMP 395 (433)
Q Consensus 323 ---~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~ 395 (433)
+.+++|++.| +|..+| .+.-+-..+| .++...|++.+|+..|.++.+---++ .++-|+.-.+- -.+.
T Consensus 623 k~kk~~~KAlq~y~kvL~~dp-----kN~yAANGIg-iVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDP-----KNMYAANGIG-IVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCc-----chhhhccchh-hhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 6778888888 899999 8888888888 88999999999998888876654444 45555443220 1333
Q ss_pred HHHHHHHHHHHhhc
Q 013948 396 EDITGALRSMMEMF 409 (433)
Q Consensus 396 ~~~~~a~~~~~~~~ 409 (433)
....+.+..+++++
T Consensus 697 ~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKF 710 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444455444
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.7e-16 Score=148.94 Aligned_cols=224 Identities=15% Similarity=0.132 Sum_probs=120.4
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcc
Q 013948 29 PAPGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGED 108 (433)
Q Consensus 29 ~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (433)
.......+++++|+.+|++.++.+|.++..+.....+ .....+..+.......+
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~------------------------- 104 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAY------------------------- 104 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc-------------------------
Confidence 3345678899999999999999999988665554444 23333333332110000
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Q 013948 109 WTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRV 188 (433)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~ 188 (433)
... .....+..+..... ..++++++...++++....+ .+..+..|..+|.++
T Consensus 105 -----~~~--~~~~~l~~~l~~~~-------------~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 105 -----ERD--GDPRYLLSALQLYY-------------RLGDYDEAEELLEKLEELPA--------APDSARFWLALAEIY 156 (280)
T ss_dssp --------------------H-HH-------------HTT-HHHHHHHHHHHHH-T-----------T-HHHHHHHHHHH
T ss_pred -----ccc--cccchhhHHHHHHH-------------HHhHHHHHHHHHHHHHhccC--------CCCCHHHHHHHHHHH
Confidence 000 00011111111111 25899999999999775431 122378899999999
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
...|++++|+.+|+++++.+|++..++..++.++...|+++++...+....+..|.++..|..+|.++..+|++++|+.
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~- 235 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE- 235 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH-
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc-
Confidence 9999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+|+++++.+|+|+..+..++.++...|+.++|....+.+
T Consensus 236 ~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 236 YLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999998887643
No 39
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=6.3e-16 Score=148.76 Aligned_cols=217 Identities=13% Similarity=0.102 Sum_probs=178.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
+..|..+++.|+..+|+-+|+.|+..+|.++++|..||.+....++-..|+..+++|++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCHH--------------------HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhc
Q 013948 262 YNDAIEKGFKKALQLDPNNEA--------------------VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTG 321 (433)
Q Consensus 262 ~~~A~~~~~~~al~~~p~~~~--------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 321 (433)
-.+|+. ++.+-+...|.... ....+...+....+.. -...........+.+|..
T Consensus 369 q~~Al~-~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~-----~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 369 QNQALK-MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL-----PTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHHHHH-HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC-----CCCCChhHHhhhHHHHhc
Confidence 999999 99999877654321 1222222222221111 000111111223678899
Q ss_pred CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccccCCcHHH
Q 013948 322 GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFGENMPEDI 398 (433)
Q Consensus 322 ~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~~~~~~~~ 398 (433)
.|+|+.|+.+| ||..+| ++...|..|| ..+..-.+.++|+..|++|++|.|.+ .+++|+++.. ++.+..
T Consensus 443 s~efdraiDcf~~AL~v~P-----nd~~lWNRLG-AtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~--mNlG~y 514 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKP-----NDYLLWNRLG-ATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC--MNLGAY 514 (579)
T ss_pred chHHHHHHHHHHHHHhcCC-----chHHHHHHhh-HHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh--hhhhhH
Confidence 99999999999 999999 9999999999 99999999999999999999999999 9999999877 677777
Q ss_pred HHHHHHHHhhcCCC
Q 013948 399 TGALRSMMEMFSGP 412 (433)
Q Consensus 399 ~~a~~~~~~~~~~~ 412 (433)
.+|.+.+.+.+...
T Consensus 515 kEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777665544
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=7e-16 Score=132.86 Aligned_cols=191 Identities=16% Similarity=0.103 Sum_probs=160.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++..|...++++|+.+|.+ ..+|..++.+|...|+.+.|-+.|++|+.++|++.++++|.|.-++.+|
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~----------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSY----------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred CCCHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 599999999999999999887 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSIDI--DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
+|++|...|++|+.. .|..+..|-++|.|..+.|+++.|.. +|+++|+++|+++.....++..+...|++..|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~-~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE-YLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH-HHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 999999999999986 34567899999999999999999999 999999999999999999999999999999888876
Q ss_pred cccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 305 QTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+...... .+ .++.+. ||..+-...|+.+.|-++-.+...+.|..
T Consensus 197 ~~~~~~~-------------------------~~------~A~sL~-L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 197 ERYQQRG-------------------------GA------QAESLL-LGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhcc-------------------------cc------cHHHHH-HHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 6322111 12 222333 33256667788888888777777777775
No 41
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=2.1e-16 Score=152.07 Aligned_cols=191 Identities=16% Similarity=0.144 Sum_probs=169.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++.+|.-+|+.++..+|.+ +++|..||.+....++-..||..++++++++|++..++..||.+|...|
T Consensus 298 nG~L~~A~LafEAAVkqdP~h----------aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQH----------AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred cCCchHHHHHHHHHHhhChHH----------HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 588999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCC-------------------------------------------CcHHHHHHHHHHHHHcCCHH
Q 013948 227 QYAEAVRDCLKSIDIDP-------------------------------------------NYSKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p-------------------------------------------~~~~~~~~lg~~~~~~g~~~ 263 (433)
.-.+|+.++.+=|+..| .+++++..||.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88888888887655532 46778888999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCc
Q 013948 264 DAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPT 343 (433)
Q Consensus 264 ~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~ 343 (433)
+|+. +|+.||..+|+|...|..||.++..-.+.++|+.-|.+ |+++.|
T Consensus 448 raiD-cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r--------------------------ALqLqP----- 495 (579)
T KOG1125|consen 448 RAVD-CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR--------------------------ALQLQP----- 495 (579)
T ss_pred HHHH-HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH--------------------------HHhcCC-----
Confidence 9998 99999999999999999998887666666655554442 788999
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+..++++|| ..+..+|.|++|.++|-.||.+.+..
T Consensus 496 ~yVR~RyNlg-IS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 496 GYVRVRYNLG-ISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred Ceeeeehhhh-hhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 9999999999 99999999999999999999998774
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2e-15 Score=135.68 Aligned_cols=300 Identities=17% Similarity=0.195 Sum_probs=220.2
Q ss_pred CCCCCCCCCC-hhhHHHHHHHHHHhhhhCCCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhc
Q 013948 1 MANSRIQTDS-PLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALG 79 (433)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~ 79 (433)
||+++-+.+- -.+.+|-|+|+.-|+-+. .++-++|++.|.+.++.||...++....|+|+..-+..+.++.
T Consensus 19 mgrrsaqq~~~~qa~~lsr~Yv~GlNfLL------s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIR-- 90 (389)
T COG2956 19 MGRRSAQQDKQDQANRLSRDYVKGLNFLL------SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIR-- 90 (389)
T ss_pred HhhhHHHhhHHHHHhhccHHHHhHHHHHh------hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHH--
Confidence 4454444442 244445566665555552 2346799999999999999999887777777766666666554
Q ss_pred ccCCCCCCCCcccCCCccchhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHH
Q 013948 80 IKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHD 159 (433)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 159 (433)
++..+.+.+....-...-...++.+.+.. .|-+|.|...|..
T Consensus 91 -------------------------iHQ~L~~spdlT~~qr~lAl~qL~~Dym~-------------aGl~DRAE~~f~~ 132 (389)
T COG2956 91 -------------------------IHQTLLESPDLTFEQRLLALQQLGRDYMA-------------AGLLDRAEDIFNQ 132 (389)
T ss_pred -------------------------HHHHHhcCCCCchHHHHHHHHHHHHHHHH-------------hhhhhHHHHHHHH
Confidence 33333333333323333334445555554 6899999999999
Q ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcHHHHHHH
Q 013948 160 AINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-----AVYYSNRAAAYTQIHQYAEAVRD 234 (433)
Q Consensus 160 al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~ 234 (433)
..+..... ..+...+-.+|....+|++||+.-++..++.+.. +..|+.+|..+....+.+.|+..
T Consensus 133 L~de~efa----------~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 133 LVDEGEFA----------EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred Hhcchhhh----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88753332 6688889999999999999999999999998876 56799999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Q 013948 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-EAVKENIRMAEQKLREERQRTGWDQTTSSSHYS 313 (433)
Q Consensus 235 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 313 (433)
+.+|+..+|++..+-..+|.+....|+|++|++ .++.+++.||.. +.+...|..||..+|+.++...+....
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~-~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~------ 275 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVE-ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA------ 275 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHH-HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH------
Confidence 999999999999999999999999999999999 999999999986 567888999999999999887775532
Q ss_pred hhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccccccccc
Q 013948 314 QESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNF 390 (433)
Q Consensus 314 ~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l 390 (433)
++..+ . +.+-..++ .+.....=.++|.....+-+...|+. .+...+-..+
T Consensus 276 --------------------~~~~~-----g-~~~~l~l~-~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 276 --------------------METNT-----G-ADAELMLA-DLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred --------------------HHccC-----C-ccHHHHHH-HHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 22233 1 11222333 33333444577888888888999998 5555444444
No 43
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.68 E-value=9.6e-16 Score=131.99 Aligned_cols=170 Identities=15% Similarity=0.126 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
..+.+...+|.-|+..|++..|...+++||+.+|++..+|..+|.+|...|+.+.|.+.|++|++++|++..++.+.|..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccc
Q 013948 256 YYAQGNYNDAIEKGFKKALQL--DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFT 333 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~a 333 (433)
++.+|++++|.. +|++|+.. .|.-...+.++|.|-.+.|+.+.|...++. +
T Consensus 113 LC~qg~~~eA~q-~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r--------------------------a 165 (250)
T COG3063 113 LCAQGRPEEAMQ-QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR--------------------------A 165 (250)
T ss_pred HHhCCChHHHHH-HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH--------------------------H
Confidence 999999999999 99999973 345678999999999999999988887663 6
Q ss_pred ccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 334 MPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 334 l~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
+..+| +++.+...++ ..+...|++..|...+++-...-+
T Consensus 166 L~~dp-----~~~~~~l~~a-~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 166 LELDP-----QFPPALLELA-RLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHhCc-----CCChHHHHHH-HHHHhcccchHHHHHHHHHHhccc
Confidence 78899 9999999999 999999999999999988766655
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1e-15 Score=154.73 Aligned_cols=225 Identities=13% Similarity=0.084 Sum_probs=184.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-AVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 225 (433)
.|+|..+..+...++..... ....++.+|.+|.++..+|+|++|..+|.+++..+|++ .-.++.+|.++.+.
T Consensus 283 K~dy~~v~~la~~ai~~t~~-------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTEN-------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 58999999999999887532 24458889999999999999999999999999999998 78899999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH----
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG----NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE---- 297 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---- 297 (433)
|+++.|+.+|+++++..|++.+....||.+|...+ .-+.|.. ++.++++..|.+..+|..++.++.....+
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~-~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~ 434 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN-VLGKVLEQTPVDSEAWLELAQLLEQTDPWASLD 434 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH-HHHHHHhcccccHHHHHHHHHHHHhcChHHHHH
Confidence 99999999999999999999999999999998886 6788999 99999999999999999999988755443
Q ss_pred --HHhcccccccCCC-cc---chhhhhhhcCCCCCCCCCcc--cccC-----CCCCCCccHHHHHHHHhhcccccCCChh
Q 013948 298 --RQRTGWDQTTSSS-HY---SQESNQSTGGFRSHGTPPSF--TMPF-----NTNALPTDIASMLMNMASNMPQAQPSQS 364 (433)
Q Consensus 298 --~~a~~~~~~~~~~-~~---~~~~~~~~~~~~~~~A~~~~--al~~-----~p~~~~~~~~~a~~~la~~~~~~~g~~~ 364 (433)
..|.......... |. +..+..+...|++.+|...| |+.. ++.....-....-+++| .++..+++++
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla-rl~E~l~~~~ 513 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA-RLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH-HHHHhhhhhh
Confidence 3333332222211 11 22367788899999999999 5444 33110112244689999 9999999999
Q ss_pred hHHHHHhhhcCCCCCc
Q 013948 365 RQGEDSNVSGSDEPGI 380 (433)
Q Consensus 365 ~A~~~~~~al~l~P~~ 380 (433)
.|.+.|+..++..|.+
T Consensus 514 ~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGY 529 (1018)
T ss_pred HHHHHHHHHHHHCchh
Confidence 9999999999999999
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.66 E-value=4.5e-15 Score=140.04 Aligned_cols=192 Identities=15% Similarity=0.057 Sum_probs=145.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++.+|++ +.+|+.+|.++...|++++|+..|+++++++|++..+|+++|.++...|
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 146 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDM----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG 146 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 689999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh--cccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR--TGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a--~~~~ 304 (433)
++++|+..|+++++++|+++.....+ .+....+++++|+. .|.+++...+.+. |. .+.+...+|+...+ ....
T Consensus 147 ~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~-~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~ 221 (296)
T PRK11189 147 RYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKE-NLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLMERL 221 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHH-HHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHHHHH
Confidence 99999999999999999998432222 23456789999999 9988775533222 22 24444445554222 1111
Q ss_pred cccC-C----Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccc
Q 013948 305 QTTS-S----SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 305 ~~~~-~----~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
.... . .+... .+..+...|++++|+..| ++..+| .++.+..+.+. .+..
T Consensus 222 ~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~----~~~~e~~~~~~-e~~~ 282 (296)
T PRK11189 222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV----YNFVEHRYALL-ELAL 282 (296)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----chHHHHHHHHH-HHHH
Confidence 1111 1 11111 156677889999999999 999996 17777776666 4443
No 46
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.7e-15 Score=143.32 Aligned_cols=148 Identities=32% Similarity=0.508 Sum_probs=130.3
Q ss_pred CcchHHHHHHHHHHHHHHHhh--cc--------------ccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 013948 146 DPSQVDKASRIFHDAINEMEK--SG--------------AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG 209 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~--~~--------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 209 (433)
..++++.++.+|++++..... .- ....-.|..+......|+.++..|+|..|+.+|.+||..+|
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 357888888888887765433 10 11123445566777889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 210 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
+++.+|.|+|.||.+++.+..|+..++++++++|++..+|++.|.++..+.+|++|.+ .|+++++++|++.++...+.+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle-ay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE-AYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHH
Q 013948 290 AEQKL 294 (433)
Q Consensus 290 ~~~~~ 294 (433)
|...+
T Consensus 469 c~~a~ 473 (539)
T KOG0548|consen 469 CVEAQ 473 (539)
T ss_pred HHHHh
Confidence 98876
No 47
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-15 Score=141.01 Aligned_cols=275 Identities=13% Similarity=0.114 Sum_probs=200.5
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
.+.+|.+|+..|..||+++|+++..|-.....+.++..++.+.- |.-..+.+.+-..+
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~--------------------dar~~~r~kd~~~k-- 118 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALG--------------------DARQSVRLKDGFSK-- 118 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhccc--------------------chhhheecCCCccc--
Confidence 56689999999999999999998666666666666666654432 22222333333333
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
...............+.....+.+.. .+....|+..+++.+..+. ..|....+-...+.|+...|+
T Consensus 119 --~~~r~~~c~~a~~~~i~A~~~~~~~~-----~~~~anal~~~~~~~~s~s-------~~pac~~a~~lka~cl~~~~~ 184 (486)
T KOG0550|consen 119 --GQLREGQCHLALSDLIEAEEKLKSKQ-----AYKAANALPTLEKLAPSHS-------REPACFKAKLLKAECLAFLGD 184 (486)
T ss_pred --cccchhhhhhhhHHHHHHHHHhhhhh-----hhHHhhhhhhhhccccccc-------CCchhhHHHHhhhhhhhhccc
Confidence 22223334444444444433333110 1122223333333322221 224456677788899999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH------------HHHHHHHHHHHHcCC
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS------------KAYSRLGLAYYAQGN 261 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~g~ 261 (433)
+++|+..--..+++++.+..+++.+|.|++...+.+.|+..|++++.++|++. ..|-..|.-.++.|+
T Consensus 185 ~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 185 YDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred chhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 99999999999999999999999999999999999999999999999999863 456667999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--ccc
Q 013948 262 YNDAIEKGFKKALQLDPNNE----AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMP 335 (433)
Q Consensus 262 ~~~A~~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~ 335 (433)
|..|.+ +|..+|.++|++. ..+.+.+.+...+|+..+|+. .. ++.
T Consensus 265 y~~A~E-~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais----------------------------dc~~Al~ 315 (486)
T KOG0550|consen 265 YRKAYE-CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS----------------------------DCNEALK 315 (486)
T ss_pred hhHHHH-HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh----------------------------hhhhhhh
Confidence 999999 9999999999853 456666777777776665443 34 788
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
++| ....+++.+| .++..++++++|+++|++++++.-+
T Consensus 316 iD~-----syikall~ra-~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 316 IDS-----SYIKALLRRA-NCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cCH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999 9999999999 9999999999999999999988666
No 48
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.64 E-value=4.4e-15 Score=135.68 Aligned_cols=190 Identities=18% Similarity=0.172 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH---H
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA---VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK---A 248 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~ 248 (433)
...+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 33478999999999999999999999999999999876 68899999999999999999999999999998775 7
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhh
Q 013948 249 YSRLGLAYYAQ--------GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQST 320 (433)
Q Consensus 249 ~~~lg~~~~~~--------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 320 (433)
++.+|.++... |++++|+. .|++++..+|++..++..+..+....+..... ....+..|.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~-----------~~~~a~~~~ 177 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFE-AFQELIRRYPNSEYAPDAKKRMDYLRNRLAGK-----------ELYVARFYL 177 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHH-HHHHHHHHCCCChhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 99999999987 89999999 99999999999977665444332222221111 012345678
Q ss_pred cCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 321 GGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 321 ~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
..|++.+|+..+ ++...|+ .| ..+.+++.+| .++..+|++++|..+++......|+
T Consensus 178 ~~g~~~~A~~~~~~al~~~p~-~~-~~~~a~~~l~-~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 178 KRGAYVAAINRFETVVENYPD-TP-ATEEALARLV-EAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HcCChHHHHHHHHHHHHHCCC-Cc-chHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888999999888 7777551 11 6779999999 9999999999999988877665553
No 49
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=2.3e-14 Score=126.53 Aligned_cols=127 Identities=23% Similarity=0.288 Sum_probs=119.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAY-TQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~ 225 (433)
.++.++++..+++++..+|++ ...|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~----------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~ 121 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN----------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA 121 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 578899999999999999998 899999999999999999999999999999999999999999985 677
Q ss_pred hc--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 226 HQ--YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 226 ~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
|+ +++|...++++++.+|+++.+++.+|.+++..|++++|+. +++++++++|.+.+-.
T Consensus 122 g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 122 GQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVLDLNSPRVNRT 181 (198)
T ss_pred CCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCccHH
Confidence 87 5999999999999999999999999999999999999999 9999999998765443
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=2e-14 Score=144.69 Aligned_cols=218 Identities=13% Similarity=0.063 Sum_probs=174.2
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
|++++|..++.++|..+|.+ ..+|+.||.+|...|+.+++..+.-.|--++|++...|..++....++|+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~----------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRN----------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred CCHHHHHHHHHHHHHhCccc----------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 99999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH-------------------------
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA------------------------- 282 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~------------------------- 282 (433)
+.+|.-+|.+||+++|.+....+..+.+|.++|++..|.. .|.+++.++|....
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~-~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME-TFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH-HHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999 99999999983210
Q ss_pred ----------------HHHHHHHHHHHHHHHHHhcccccccCC-----Cccch------------------------h--
Q 013948 283 ----------------VKENIRMAEQKLREERQRTGWDQTTSS-----SHYSQ------------------------E-- 315 (433)
Q Consensus 283 ----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~------------------------~-- 315 (433)
...-++.++.+..+++.+......... .+..+ .
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 111223333333344433322110000 00000 0
Q ss_pred ---------------------------------------hhhhhcCCCCCCCCCcc-cccCCCCCCCccHHHHHHHHhhc
Q 013948 316 ---------------------------------------SNQSTGGFRSHGTPPSF-TMPFNTNALPTDIASMLMNMASN 355 (433)
Q Consensus 316 ---------------------------------------~~~~~~~~~~~~A~~~~-al~~~p~~~~~~~~~a~~~la~~ 355 (433)
+..|...|+|.+|+..| .+...| +.++..+|+.+| .
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~---~~~~~~vw~~~a-~ 457 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE---GYQNAFVWYKLA-R 457 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc---cccchhhhHHHH-H
Confidence 01234448888888888 443333 135577999999 9
Q ss_pred ccccCCChhhHHHHHhhhcCCCCCc
Q 013948 356 MPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+|..+|.+++|+..|++++.++|++
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999
No 51
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=7.8e-15 Score=122.91 Aligned_cols=103 Identities=13% Similarity=0.011 Sum_probs=99.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWS----------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCc----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 589999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
++++|+..|++++++.|+++..+..+|.+...+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999887654
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.1e-15 Score=136.39 Aligned_cols=259 Identities=12% Similarity=0.077 Sum_probs=205.8
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
-.+++.+|+.-|+++.-+||.+..++-.++.|..+-..++...... +..+...
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~----------------------~~Lf~~~----- 296 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM----------------------DYLFAKV----- 296 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH----------------------HHHHhhh-----
Confidence 3467889999999999999999877766666665544443332210 0000000
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
..+... |--.+....+.+++..|+.+-+++|+.+|.+ ..++...|..+...|+
T Consensus 297 ---~~ta~~--------------wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~----------~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 297 ---KYTASH--------------WFVHAQLLYDEKKFERALNFVEKCIDSEPRN----------HEALILKGRLLIALER 349 (564)
T ss_pred ---hcchhh--------------hhhhhhhhhhhhhHHHHHHHHHHHhccCccc----------chHHHhccHHHHhccc
Confidence 000111 1111222224589999999999999999988 8999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH-HHHHH-cCCHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG-LAYYA-QGNYNDAIEKGFK 271 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg-~~~~~-~g~~~~A~~~~~~ 271 (433)
.++|+..|+.|..+.|.+..+|-.+-.+|+..|++.+|....+.+++.-|.++.++-.+| .++.. -.--++|.. .++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk-f~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK-FAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH-HHH
Confidence 999999999999999999999999999999999999999999999999999999999997 55543 344578898 999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHH
Q 013948 272 KALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMN 351 (433)
Q Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~ 351 (433)
++|+++|....+...++..+...|++..++...++. +...| +...+..
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~--------------------------L~~~~------D~~LH~~ 476 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH--------------------------LIIFP------DVNLHNH 476 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH--------------------------Hhhcc------ccHHHHH
Confidence 999999999999999999999999999888776642 33334 3357888
Q ss_pred HhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 352 MASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 352 la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+| .++...+.+.+|+..|..|+.+||.+
T Consensus 477 Lg-d~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 477 LG-DIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HH-HHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 99 99999999999999999999999997
No 53
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=6.6e-14 Score=138.80 Aligned_cols=134 Identities=17% Similarity=0.131 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
.|...|..+...++.++|..++.++-.++|..+..|+..|.++...|++++|.+ .|..++.++|+++.....+|.++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~-af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKE-AFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHH-HHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 366777777788888888888888888888888888888888888888888888 8888888888888888888888888
Q ss_pred HHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 294 LREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
.|+..-+.... .+ ++..+| .++++|+.+| .++..+|+.++|.++|.
T Consensus 731 ~G~~~la~~~~--------------------------~L~dalr~dp-----~n~eaW~~LG-~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 731 LGSPRLAEKRS--------------------------LLSDALRLDP-----LNHEAWYYLG-EVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hCCcchHHHHH--------------------------HHHHHHhhCC-----CCHHHHHHHH-HHHHHccchHHHHHHHH
Confidence 88543332210 12 789999 9999999999 99999999999999999
Q ss_pred hhcCCCCCc
Q 013948 372 VSGSDEPGI 380 (433)
Q Consensus 372 ~al~l~P~~ 380 (433)
.|+++++++
T Consensus 779 aa~qLe~S~ 787 (799)
T KOG4162|consen 779 AALQLEESN 787 (799)
T ss_pred HHHhhccCC
Confidence 999999998
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1e-14 Score=139.95 Aligned_cols=149 Identities=18% Similarity=0.239 Sum_probs=123.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+.++|+.+|..|-++.|.. ......+|.-|...++++-|..+|.+|+.+.|+++-.+..+|.+.+..+
T Consensus 359 e~EhdQAmaaY~tAarl~~G~----------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~ 428 (611)
T KOG1173|consen 359 EGEHDQAMAAYFTAARLMPGC----------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYE 428 (611)
T ss_pred cchHHHHHHHHHHHHHhccCC----------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHh
Confidence 477888888888888888876 5667778888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDID-------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
.|.+|..+|++++..- +.....+.+||.++.+++.+++|+. +|+++|.+.|.++.++..+|.++..+|+.+.
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~-~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID-YYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH-HHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 8888888888888331 2245668888888888888888888 8888888888888888888888888888888
Q ss_pred hcccccc
Q 013948 300 RTGWDQT 306 (433)
Q Consensus 300 a~~~~~~ 306 (433)
|+.++.+
T Consensus 508 Aid~fhK 514 (611)
T KOG1173|consen 508 AIDHFHK 514 (611)
T ss_pred HHHHHHH
Confidence 7777654
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=3.8e-15 Score=139.12 Aligned_cols=196 Identities=14% Similarity=0.033 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.++.+.|++.+..|++++|.+.|..++..+..+..+++++|..+..+|+.++|+.+|-+...+--++..+++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 67778888899999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc-CCCcc-----chhhhhhhcCCCCCCCCCc
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT-SSSHY-----SQESNQSTGGFRSHGTPPS 331 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~A~~~ 331 (433)
.+.+..+|++ ++.++..+-|+++.++..|+..|-..|+..+|..++-.. ..-|. .+.+.+|....-+++|+.+
T Consensus 570 ~led~aqaie-~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 570 LLEDPAQAIE-LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred HhhCHHHHHH-HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999988874322 22222 2336778888889999999
Q ss_pred c--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 332 F--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 332 ~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
| +--+.| +.....+..+ .++...|+|..|+..|+....-.|++
T Consensus 649 ~ekaaliqp-----~~~kwqlmia-sc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 649 FEKAALIQP-----NQSKWQLMIA-SCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHhcCc-----cHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHhCccc
Confidence 9 888899 7777777778 89999999999999999999999998
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.60 E-value=6e-14 Score=116.46 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHH
Q 013948 155 RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRD 234 (433)
Q Consensus 155 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 234 (433)
+.+++++...|.+ ..+.+.+|..++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..
T Consensus 4 ~~~~~~l~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 4 ATLKDLLGLDSEQ----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hhHHHHHcCChhh----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888876 788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 235 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
+++++..+|+++..++.+|.++...|++++|+. +|+++++++|++.........
T Consensus 74 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~ 127 (135)
T TIGR02552 74 YALAAALDPDDPRPYFHAAECLLALGEPESALK-ALDLAIEICGENPEYSELKER 127 (135)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccccchHHHHHHH
Confidence 999999999999999999999999999999999 999999999998875544433
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.58 E-value=1.3e-13 Score=125.93 Aligned_cols=154 Identities=19% Similarity=0.115 Sum_probs=136.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV---YYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~ 223 (433)
.|++++|+..+++++..+|.+ +....+++.+|.+++..|++++|+..|+++++.+|+++. +++.+|.++.
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~-------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~ 118 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFS-------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY 118 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCc-------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence 499999999999999998875 333568999999999999999999999999999998865 7999999999
Q ss_pred Hh--------hcHHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 224 QI--------HQYAEAVRDCLKSIDIDPNYSKAY-----------------SRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 224 ~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
.. |++++|+..+++++..+|++..++ ..+|.++...|++.+|+. .+++++...|
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~-~~~~al~~~p 197 (235)
T TIGR03302 119 NQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN-RFETVVENYP 197 (235)
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHCC
Confidence 87 899999999999999999986543 467889999999999999 9999999977
Q ss_pred CC---HHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 279 NN---EAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 279 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
+. +.++..++.++..+|++++|..+.+...
T Consensus 198 ~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 198 DTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 5899999999999999999988766443
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=9.4e-13 Score=132.75 Aligned_cols=281 Identities=10% Similarity=0.034 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCCCC
Q 013948 36 EGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPDS 115 (433)
Q Consensus 36 ~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 115 (433)
+++++|.+.+.++|..||.++.+|...+.+++..+...+.....+.+- .++
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--------------------HL~--------- 203 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--------------------HLN--------- 203 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--------------------hcC---------
Confidence 669999999999999999999777766666666665566555221100 110
Q ss_pred CCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHH
Q 013948 116 TGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYS 195 (433)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 195 (433)
.... +++..+.....+ +|.+++|+-+|.+||+..|.+ ....+..+.+|.+.|+..
T Consensus 204 -p~d~-e~W~~ladls~~-------------~~~i~qA~~cy~rAI~~~p~n----------~~~~~ers~L~~~~G~~~ 258 (895)
T KOG2076|consen 204 -PKDY-ELWKRLADLSEQ-------------LGNINQARYCYSRAIQANPSN----------WELIYERSSLYQKTGDLK 258 (895)
T ss_pred -CCCh-HHHHHHHHHHHh-------------cccHHHHHHHHHHHHhcCCcc----------hHHHHHHHHHHHHhChHH
Confidence 1111 333344433333 789999999999999999988 778888999999999999
Q ss_pred HHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--CCcHHH--------------------
Q 013948 196 DAIELYSFAIALCGNNA-----VYYSNRAAAYTQIHQYAEAVRDCLKSIDID--PNYSKA-------------------- 248 (433)
Q Consensus 196 ~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~-------------------- 248 (433)
.|++.|.+++..+|... ......+..+...++-+.|++.+..++... -....-
T Consensus 259 ~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 259 RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 99999999999999321 122233444455555555555555555411 001111
Q ss_pred -------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhhCC-CCHHHH
Q 013948 249 -------------------------------------------YSRLGLAYYAQGNYNDAIEKGFKKALQLDP-NNEAVK 284 (433)
Q Consensus 249 -------------------------------------------~~~lg~~~~~~g~~~~A~~~~~~~al~~~p-~~~~~~ 284 (433)
+..++.+..+.++..+++. .+..--...| +++..+
T Consensus 339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll-~~l~~~n~~~~d~~dL~ 417 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALL-HFLVEDNVWVSDDVDLY 417 (895)
T ss_pred HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHH-HHHHHhcCChhhhHHHH
Confidence 2223333333333333333 2221111112 346677
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCcc-chh------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhc
Q 013948 285 ENIRMAEQKLREERQRTGWDQTTSSSHY-SQE------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASN 355 (433)
Q Consensus 285 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~ 355 (433)
..++.++...|++..|..++......+. ... +..|+..|.++.|++.| ++..+| ++..+...++ .
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-----~~~D~Ri~La-s 491 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-----DNLDARITLA-S 491 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CchhhhhhHH-H
Confidence 7888888888888888777665553322 221 44566668888888888 999999 9999999999 9
Q ss_pred ccccCCChhhHHHHHhhhcCCC
Q 013948 356 MPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~l~ 377 (433)
++..+|+.++|.+.......-|
T Consensus 492 l~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHhcCCHHHHHHHHhcccCCC
Confidence 9999999999999998877444
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.55 E-value=2.3e-13 Score=134.14 Aligned_cols=198 Identities=20% Similarity=0.224 Sum_probs=162.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--------CCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--------NNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l 218 (433)
.+++++|+.+|++++++.... .+..++..+.++.+||..|...|+|++|..++++|+++.. .-...+.++
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~--~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEV--FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 789999999999999987643 2334677799999999999999999999999999998742 235678999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--------CCCHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDID--------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD--------PNNEA 282 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~--------p~~~~ 282 (433)
+.++..++++++|..++++++++- |.-+..+.+||.+|+.+|+|++|.+ .|++|+.+. +....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE-LYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHhcccCcChhhhH
Confidence 999999999999999999999872 2346889999999999999999999 999999764 23355
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccC
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQ 360 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~ 360 (433)
....++..+..++++.+|...+.... ... .-...| +....+.+|+ .+|..+
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~---------------------~i~~~~g~~~~-----~~~~~~~nL~-~~Y~~~ 463 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAK---------------------DIMKLCGPDHP-----DVTYTYLNLA-ALYRAQ 463 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHH---------------------HHHHHhCCCCC-----chHHHHHHHH-HHHHHc
Confidence 77888888888888877766655222 111 223456 8888999999 999999
Q ss_pred CChhhHHHHHhhhc
Q 013948 361 PSQSRQGEDSNVSG 374 (433)
Q Consensus 361 g~~~~A~~~~~~al 374 (433)
|++++|++.-.+++
T Consensus 464 g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 464 GNYEAAEELEEKVL 477 (508)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999888876
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=3e-14 Score=138.52 Aligned_cols=193 Identities=15% Similarity=0.061 Sum_probs=133.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
++..++|+.+++++|+.+|.. ...|..+|+++.++++.+.|.+.|...++.+|++..+|..++.+-.+.|
T Consensus 664 ld~~eeA~rllEe~lk~fp~f----------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDF----------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCch----------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 466777777777777776665 6677777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+...|...++++...+|.+...|+..-.+-.+.|+.++|.. ...+||+-.|++...|..--...-.-++..
T Consensus 734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~-lmakALQecp~sg~LWaEaI~le~~~~rkT-------- 804 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL-LMAKALQECPSSGLLWAEAIWLEPRPQRKT-------- 804 (913)
T ss_pred chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCccchhHHHHHHhccCcccch--------
Confidence 77777777777777777777777777777777777777777 777777777776665544322211111100
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccc
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGN 385 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~ 385 (433)
.++. |+.... .++++....| .++....++++|.++|.+++..+|++ .++..
T Consensus 805 --------------------ks~D--ALkkce-----~dphVllaia-~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 805 --------------------KSID--ALKKCE-----HDPHVLLAIA-KLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred --------------------HHHH--HHHhcc-----CCchhHHHHH-HHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 0111 455555 6668899999 89999999999999999999999999 54444
Q ss_pred c
Q 013948 386 I 386 (433)
Q Consensus 386 ~ 386 (433)
+
T Consensus 857 f 857 (913)
T KOG0495|consen 857 F 857 (913)
T ss_pred H
Confidence 3
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=2.1e-13 Score=134.20 Aligned_cols=218 Identities=8% Similarity=0.034 Sum_probs=172.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKC-QGNRVMQSQQYSDAIELYSFAIALCGNNAVY-YSNRAAAYTQ 224 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~ 224 (433)
.|+|++|.+...++-...+. +..++. .+......|+++.|..+|.++.+.+|+.... ....+.++..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-----------p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-----------PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 48999998666554332111 333344 4666699999999999999999999988543 3445899999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----------------------------
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL---------------------------- 276 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~---------------------------- 276 (433)
.|++++|+..++++++.+|+++.++..++.+|...|+|++|+. .+.+..+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~-~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD-ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999996 55544432
Q ss_pred --------------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh-hhhh--hcCCCCCCCCCcc--cccCC
Q 013948 277 --------------DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE-SNQS--TGGFRSHGTPPSF--TMPFN 337 (433)
Q Consensus 277 --------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~~~~~~~A~~~~--al~~~ 337 (433)
.|+++.+...++..+...|+.++|..........+.+.. ...| ...+++++++... .++.+
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC
Confidence 234566677777788888888888887766654333332 2233 3448888888888 88899
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCccc
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRI 382 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 382 (433)
| +++..+..+| .++...|++++|.+.|+++++.+|++..
T Consensus 325 P-----~~~~l~l~lg-rl~~~~~~~~~A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 325 G-----DTPLLWSTLG-QLLMKHGEWQEASLAFRAALKQRPDAYD 363 (398)
T ss_pred C-----CCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence 9 9999999999 9999999999999999999999999844
No 62
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=8.2e-13 Score=130.56 Aligned_cols=218 Identities=6% Similarity=-0.023 Sum_probs=158.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+++.|..++.++.+..|.+. ..+....+.++...|++++|+..+++.++..|+++.++..++.++...|
T Consensus 131 ~g~~~~A~~~l~~a~~~~p~~~---------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 131 RGDEARANQHLEEAAELAGNDN---------ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCcCc---------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 4788888888888887776641 2344455788888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYS----RLGLAYYAQGNYNDAIEKGFKKALQLDP----NNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~----~lg~~~~~~g~~~~A~~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~ 298 (433)
++++|+..+.+.++....++.... ....-+...+..+++.. .+.++.+..| +++.++..++..+...|+++
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~-~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID-GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 888888888888877544433221 22222244455555666 6777777666 47888888888888888888
Q ss_pred HhcccccccCC-Cccchh-------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHH--HHHHHHhhcccccCCChhhH
Q 013948 299 QRTGWDQTTSS-SHYSQE-------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIA--SMLMNMASNMPQAQPSQSRQ 366 (433)
Q Consensus 299 ~a~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~--~a~~~la~~~~~~~g~~~~A 366 (433)
+|......... .|.+.. .......++.+.++..+ +++.+| +++ .....+| .++..+|++++|
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p-----~~~~~~ll~sLg-~l~~~~~~~~~A 354 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD-----DKPKCCINRALG-QLLMKHGEFIEA 354 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC-----CChhHHHHHHHH-HHHHHcccHHHH
Confidence 88887666653 333221 11123335555666666 888999 999 8888999 999999999999
Q ss_pred HHHHh--hhcCCCCCc
Q 013948 367 GEDSN--VSGSDEPGI 380 (433)
Q Consensus 367 ~~~~~--~al~l~P~~ 380 (433)
.++|+ ++++.+|+.
T Consensus 355 ~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 355 ADAFKNVAACKEQLDA 370 (409)
T ss_pred HHHHHHhHHhhcCCCH
Confidence 99999 688899988
No 63
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.53 E-value=2.3e-13 Score=137.83 Aligned_cols=225 Identities=13% Similarity=0.019 Sum_probs=156.1
Q ss_pred cCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 139 TMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 139 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
..+..+.+.+++..|+..|+.+++.+|++ ...|..+|.+|...|+|..|++.|.+|..++|.+.-..|..
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD----------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~ 636 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKD----------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKE 636 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchh----------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHH
Confidence 35666667899999999999999999988 89999999999999999999999999999999999888889
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------C-------
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPNY-------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-------D------- 277 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-------~------- 277 (433)
+.+....|.|.+|+..+...+...... .+.+.+++..+.-.|=+.+|.. .++++++. .
T Consensus 637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd-~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVD-FFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999999998888777654332 2233333332222332222222 22221110 0
Q ss_pred -------------------------------------CC-------------------CHHHHHHHHHHHHH--------
Q 013948 278 -------------------------------------PN-------------------NEAVKENIRMAEQK-------- 293 (433)
Q Consensus 278 -------------------------------------p~-------------------~~~~~~~l~~~~~~-------- 293 (433)
|+ ++..|++||..+..
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 00 13457777777655
Q ss_pred HHHHHHhcccccccCCCccchhhhh-----hhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhH
Q 013948 294 LREERQRTGWDQTTSSSHYSQESNQ-----STGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ 366 (433)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A 366 (433)
+.+...|+.+..++.....+....| ...-|++..|...| .+..+| .....|.|+| .+.....+++.|
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep-----~~~~~W~Nlg-vL~l~n~d~E~A 869 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEP-----TCHCQWLNLG-VLVLENQDFEHA 869 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccc-----cchhheeccc-eeEEecccHHHh
Confidence 1223355565555543333332222 22337777777777 777888 8888888888 888888888888
Q ss_pred HHHHhhhcCCCCCc
Q 013948 367 GEDSNVSGSDEPGI 380 (433)
Q Consensus 367 ~~~~~~al~l~P~~ 380 (433)
...+.++..++|.+
T Consensus 870 ~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLN 883 (1238)
T ss_pred hHHHHhhhhcCchh
Confidence 88888888888887
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.53 E-value=5.3e-13 Score=140.18 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=150.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+.++|+.++++++.-.|.. ......+|.++...|+|++|++.|+++++.+|+++.++..++.++...+
T Consensus 81 ~G~~~~A~~~~eka~~p~n~~----------~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 81 AGRDQEVIDVYERYQSSMNIS----------SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG 150 (822)
T ss_pred cCCcHHHHHHHHHhccCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence 477888888888888322222 4455555778888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+.++|+..+++++..+|.+... ..++.++...+++.+|+. .++++++.+|++..++..+..+....|-...|......
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~-~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQ-ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 8888888888888888886554 556666666777777888 88888888888888877777776666544333322111
Q ss_pred cC----------------------------------------------------CCccchh---------hhhhhcCCCC
Q 013948 307 TS----------------------------------------------------SSHYSQE---------SNQSTGGFRS 325 (433)
Q Consensus 307 ~~----------------------------------------------------~~~~~~~---------~~~~~~~~~~ 325 (433)
-. ..|.... .......+++
T Consensus 229 ~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~ 308 (822)
T PRK14574 229 NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT 308 (822)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence 00 0010000 0112333788
Q ss_pred CCCCCcc-cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 326 HGTPPSF-TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 326 ~~A~~~~-al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
.+++..| +|...+...| .. +....| ..|..+++.++|+..|+.++.-+|+
T Consensus 309 ~~vi~~y~~l~~~~~~~P-~y--~~~a~a-dayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 309 ADLIKEYEAMEAEGYKMP-DY--ARRWAA-SAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred HHHHHHHHHhhhcCCCCC-HH--HHHHHH-HHHHhcCCcHHHHHHHHHHhhcccc
Confidence 8888888 7776553333 32 444556 6788889999999999988887753
No 65
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.53 E-value=1.6e-13 Score=124.39 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
....-++.+|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|+-..|+..+.++|++.|+...+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhccc------------ccccC-CCccch-----
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGW------------DQTTS-SSHYSQ----- 314 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~------------~~~~~-~~~~~~----- 314 (433)
+.++|++++|.. .|.++|+.+|++. ++...++.+........+...+ ..... ..+-+.
T Consensus 116 llK~Gele~A~~-DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEA-DFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHH-HHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 999999999999 9999999999653 4444455444333333332222 22111 111111
Q ss_pred hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 315 ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 315 ~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+..|...|....|+..+ +-.+.. ++.+.++.++ .++...|+.+.++...+..|++||+.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~-----DnTe~~ykis-~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQ-----DNTEGHYKIS-QLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccc-----cchHHHHHHH-HHHHhhhhHHHHHHHHHHHHccCcch
Confidence 134466669999999998 778888 9999999999 99999999999999999999999995
No 66
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.52 E-value=7.7e-13 Score=109.23 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
..+..+.+|..++..|++++|...|+..+.++|.++..|++||.|+..+|+|.+|+..|.+++.++|+++.+++++|.|+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
+..|+.+.|.. .|+.++......+
T Consensus 114 L~lG~~~~A~~-aF~~Ai~~~~~~~ 137 (157)
T PRK15363 114 LACDNVCYAIK-ALKAVVRICGEVS 137 (157)
T ss_pred HHcCCHHHHHH-HHHHHHHHhccCh
Confidence 99999999999 9999999874443
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=1.5e-12 Score=128.04 Aligned_cols=210 Identities=6% Similarity=-0.071 Sum_probs=122.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH--------HH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS--------NR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--------~l 218 (433)
.|++++|+..+++.++..|++ ..++..++.++...|++++|++.+.+..+..+.+..... .+
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~----------~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRH----------PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999988 889999999999999999999777777655443322111 11
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
........+-+.....++..-+..|+++.++..+|..+...|+.++|.. .++++++ .|.++.....++.+.. ++.+
T Consensus 236 ~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~-~L~~~l~-~~~~~~l~~l~~~l~~--~~~~ 311 (398)
T PRK10747 236 MDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ-IILDGLK-RQYDERLVLLIPRLKT--NNPE 311 (398)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHh-cCCCHHHHHHHhhccC--CChH
Confidence 1111111112222222222222334455555555555555555555555 5555555 2223333332232211 3333
Q ss_pred HhcccccccC-CCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 299 QRTGWDQTTS-SSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 299 ~a~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
++....+... ..|.+.. +..+...+++++|...| ++...| +... +..++ .++..+|+.++|..+|
T Consensus 312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-----~~~~-~~~La-~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-----DAYD-YAWLA-DALDRLHKPEEAAAMR 384 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----CHHH-HHHHH-HHHHHcCCHHHHHHHH
Confidence 3333333222 1122111 34444555555555555 777888 7644 55688 8899999999999999
Q ss_pred hhhcCCC
Q 013948 371 NVSGSDE 377 (433)
Q Consensus 371 ~~al~l~ 377 (433)
++++.+.
T Consensus 385 ~~~l~~~ 391 (398)
T PRK10747 385 RDGLMLT 391 (398)
T ss_pred HHHHhhh
Confidence 9998764
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.51 E-value=2.7e-13 Score=132.18 Aligned_cols=250 Identities=13% Similarity=0.101 Sum_probs=202.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++|.+.++..+..|..+|.+ .+.+..+|..+...|+-++|......++..++.+..+|.-+|.++...+
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eH----------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEH----------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCcc----------chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 489999999999999999988 7899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+|++|+.+|+.|+.++|+|...|..++....++++++.... .-.+.+++.|.....|...+.++...|++..|......
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~-tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE-TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999988776433
Q ss_pred cCC----Cccch--h--------hhhhhcCCCCCCCCCcc-cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 307 TSS----SHYSQ--E--------SNQSTGGFRSHGTPPSF-TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 307 ~~~----~~~~~--~--------~~~~~~~~~~~~A~~~~-al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
... .+... + .......|.+++|++.+ -.+-.- .+........| .++..+|+.++|...|+
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i----~Dkla~~e~ka-~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI----VDKLAFEETKA-DLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH----HHHHHHhhhHH-HHHHHHhhHHhHHHHHH
Confidence 221 11111 1 23345558888888776 333333 23344455667 89999999999999999
Q ss_pred hhcCCCCCc-ccccccccccc--cCCcHHHHHHHHHHHhhcCCC
Q 013948 372 VSGSDEPGI-RIGGNINLNFG--ENMPEDITGALRSMMEMFSGP 412 (433)
Q Consensus 372 ~al~l~P~~-~~~~~~~~~l~--~~~~~~~~~a~~~~~~~~~~~ 412 (433)
..+..+|++ ...-.+...++ ..+.+.+...+....+.+.++
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 999999999 44444433332 344444444555555555444
No 69
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=3.4e-12 Score=124.47 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=186.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.||...|..++.++++.+|++ .+.|+..-.+.+...+++.|..+|.++....| ...+|+..+.....++
T Consensus 597 agdv~~ar~il~~af~~~pns----------eeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNS----------EEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLD 665 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCc----------HHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhh
Confidence 589999999999999999987 88899888889999999999999999998766 5688889999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+.++|+..++.+++..|+++..|+.+|+++.++++.+.|.. .|...++..|+.+..|..|+.+-.+.|...+|......
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~-aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMARE-AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHH-HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999998888887766
Q ss_pred cC-CCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 307 TS-SSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 307 ~~-~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
.. ..|.+.. ...-.+.|..+.|.... |+...| .....|..-. .+...-++...++..+++. +-||
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp-----~sg~LWaEaI-~le~~~~rkTks~DALkkc-e~dp 817 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP-----SSGLLWAEAI-WLEPRPQRKTKSIDALKKC-EHDP 817 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ccchhHHHHH-HhccCcccchHHHHHHHhc-cCCc
Confidence 65 3444332 33456668888888888 999999 8888887766 6666667778888888887 7788
Q ss_pred Cc
Q 013948 379 GI 380 (433)
Q Consensus 379 ~~ 380 (433)
.-
T Consensus 818 hV 819 (913)
T KOG0495|consen 818 HV 819 (913)
T ss_pred hh
Confidence 76
No 70
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.50 E-value=8.1e-13 Score=127.56 Aligned_cols=117 Identities=31% Similarity=0.489 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
-+...|..++..|+|++|+.+|.+++.++|+++.+|+++|.++..+|++++|+..+++++.++|+++.+++.+|.+++.+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 36677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 260 g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
|+|++|+. +|+++++++|+++.+...++.|...+...
T Consensus 84 g~~~eA~~-~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 84 EEYQTAKA-ALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999 99999999999999999999998877543
No 71
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=5.6e-13 Score=124.77 Aligned_cols=201 Identities=13% Similarity=0.072 Sum_probs=179.5
Q ss_pred CCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013948 145 DDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 145 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 224 (433)
...|++++|.+.|+++|..+... .++++++|..+...|+.++|+++|-+...+--+++.+++.++.+|..
T Consensus 501 f~ngd~dka~~~ykeal~ndasc----------~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASC----------TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL 570 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHH----------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34699999999999999987665 89999999999999999999999999888888899999999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
+.+..+|++++.++.++-|++|.++..||.+|-+.|+-.+|.+ ++-......|-+.+...+|+.-|....-+++++.++
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq-~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ-CHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh-hhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999998
Q ss_pred cccCC-Cccch-h----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCC
Q 013948 305 QTTSS-SHYSQ-E----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPS 362 (433)
Q Consensus 305 ~~~~~-~~~~~-~----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~ 362 (433)
+++.. .|... + +..+.+.|+|.+|+..| .-...| ++..++.-+. ++-..+|-
T Consensus 650 ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp-----edldclkflv-ri~~dlgl 709 (840)
T KOG2003|consen 650 EKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP-----EDLDCLKFLV-RIAGDLGL 709 (840)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc-----cchHHHHHHH-HHhccccc
Confidence 87763 33322 2 45677889999999999 666788 8888887777 66666665
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=6.2e-13 Score=119.91 Aligned_cols=233 Identities=11% Similarity=-0.018 Sum_probs=187.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
.|..+|-..++..+...-....-....-...+-...+|.||++.|-+.+|.+.++.+++..| .++.+..++.+|....+
T Consensus 193 nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQ 271 (478)
T KOG1129|consen 193 NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQ 271 (478)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhcc
Confidence 56666666666655543221000000011122234599999999999999999999999876 77888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+..|+..+...+...|.+.......+.++..++++++|.+ .|+.+++.+|.+.++.-.++..|..-++.+-|..+++..
T Consensus 272 P~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~-lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 272 PERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQ-LYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred HHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHH-HHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999998876
Q ss_pred CCCcc------chhhhhhhcCCCCCCCCCcc--ccc--CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 308 SSSHY------SQESNQSTGGFRSHGTPPSF--TMP--FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 308 ~~~~~------~~~~~~~~~~~~~~~A~~~~--al~--~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
..... ...+...+-+++++-++..| |+. .+| ..-+.+|+++| .+....|++.-|..+|+-++..|
T Consensus 351 LqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~----~~aaDvWYNlg-~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 351 LQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP----GQAADVWYNLG-FVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc----chhhhhhhccc-eeEEeccchHHHHHHHHHHhccC
Confidence 53222 22244566679999999999 443 334 37788999999 99999999999999999999999
Q ss_pred CCc-ccccccc
Q 013948 378 PGI-RIGGNIN 387 (433)
Q Consensus 378 P~~-~~~~~~~ 387 (433)
|+. ....|+.
T Consensus 426 ~~h~ealnNLa 436 (478)
T KOG1129|consen 426 AQHGEALNNLA 436 (478)
T ss_pred cchHHHHHhHH
Confidence 999 5555544
No 73
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.45 E-value=9.4e-13 Score=116.30 Aligned_cols=117 Identities=16% Similarity=0.128 Sum_probs=110.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCC--HHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY-YAQGN--YNDAIE 267 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~ 267 (433)
.++.++++..+++++..+|++...|+.+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 268 KGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
.++++++++|+++.++..+|.++...|++++|+.+++++.
T Consensus 132 -~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 132 -MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred -HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877543
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.44 E-value=4e-12 Score=131.34 Aligned_cols=130 Identities=5% Similarity=-0.076 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.+++.||.+....|.+++|...+.+++++.|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
++|+|++|+. .|++++..+|+++.++.++|.++...|+.++|...++++.
T Consensus 166 ~~g~~~~A~~-~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 166 EIGQSEQADA-CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HhcchHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 9999998888889999999999999999888888877664
No 75
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.43 E-value=8.5e-12 Score=110.07 Aligned_cols=149 Identities=17% Similarity=0.262 Sum_probs=136.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+-+.+..+..++...+|.+ ...+..+|...+..|+|..|+..++++..+.|++..+|..+|.+|.+.|
T Consensus 79 ~G~a~~~l~~~~~~~~~~~~d----------~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 79 RGDADSSLAVLQKSAIAYPKD----------RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred cccccchHHHHhhhhccCccc----------HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 366667777777777776765 6677779999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|...|.+++++.|+.+.+..++|..+.-.|+++.|.. .+..+....+.+..+..+++.+....|+...|......
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~-lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET-LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH-HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999999999999999999999999999999 99999998889999999999999999999998887653
No 76
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.1e-13 Score=125.33 Aligned_cols=222 Identities=12% Similarity=0.038 Sum_probs=181.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
....|..|+..+..||++.|.+ +..|...+-+++..++|++|.-..++.++++|..+..+...+.|+..+
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~----------a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDN----------ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccc----------hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 3689999999999999999988 888999999999999999999999999999999988888888888888
Q ss_pred hcHHHHHHHHHHHH------------hc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013948 226 HQYAEAVRDCLKSI------------DI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287 (433)
Q Consensus 226 ~~~~~A~~~~~~al------------~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l 287 (433)
++..+|...++..- .+ .|....+-+..+.|+..+|++++|.. .--..+++++.+..++...
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~-ea~~ilkld~~n~~al~vr 209 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS-EAIDILKLDATNAEALYVR 209 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH-HHHHHHhcccchhHHHHhc
Confidence 87777765554111 01 13445666667888888888888888 8888888888888888888
Q ss_pred HHHHHHHHHHHHhcccccccCC-Cccchh-----------------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHH
Q 013948 288 RMAEQKLREERQRTGWDQTTSS-SHYSQE-----------------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIAS 347 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~ 347 (433)
|.++....+.+.+..+++++.. .|.... ++.....|+|.+|.+.| +|.++|. ....++.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-n~~~nak 288 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-NKKTNAK 288 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-ccchhHH
Confidence 8888888888888887777663 333222 23345569999999999 9999995 3447888
Q ss_pred HHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 348 MLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 348 a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.|++++ .+...+|+..+|+.+...++++||..
T Consensus 289 lY~nra-~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 289 LYGNRA-LVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred HHHHhH-hhhcccCCchhhhhhhhhhhhcCHHH
Confidence 999999 99999999999999999999999998
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=7.1e-12 Score=113.10 Aligned_cols=215 Identities=11% Similarity=0.034 Sum_probs=149.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-----AVYYSNRAAAY 222 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 222 (433)
.+.++|++.|...++.+|.. .+++..+|+.+...|+.+.||..-+..+ ..|+- ..+.+.||.=|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t----------~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPET----------FEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred cCcchHHHHHHHHHhcCchh----------hHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHH
Confidence 57889999999999987776 8999999999999999999999877655 45654 45788999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-----EAVKENIRMAEQKLREE 297 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~ 297 (433)
+..|-++.|...|........--..+.-.|-.+|....+|++|+. ..++..++.|.. ...+..|+..+....+.
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId-~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAID-VAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999888766667889999999999999999999 999999988764 34556666666666666
Q ss_pred HHhcccccccC-CCccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccH-HHHHHHHhhcccccCCChhhHHH
Q 013948 298 RQRTGWDQTTS-SSHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDI-ASMLMNMASNMPQAQPSQSRQGE 368 (433)
Q Consensus 298 ~~a~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~-~~a~~~la~~~~~~~g~~~~A~~ 368 (433)
++|..+..++. ..+.+. .+.+++..|+|++|++.+ +++.|| +. +++.-.+. .+|..+|+.++.+.
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~-----~yl~evl~~L~-~~Y~~lg~~~~~~~ 270 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP-----EYLSEVLEMLY-ECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh-----HHHHHHHHHHH-HHHHHhCCHHHHHH
Confidence 66666655432 111111 133344445555555544 444444 22 22333333 44555555555555
Q ss_pred HHhhhcCCCCCc
Q 013948 369 DSNVSGSDEPGI 380 (433)
Q Consensus 369 ~~~~al~l~P~~ 380 (433)
...++.+..++.
T Consensus 271 fL~~~~~~~~g~ 282 (389)
T COG2956 271 FLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHccCCc
Confidence 555554444443
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=2.8e-12 Score=126.62 Aligned_cols=203 Identities=16% Similarity=0.181 Sum_probs=162.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------CGNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 218 (433)
.|+|++|+..++.+++.-.+... ...+........+|..|...++|.+|+..|++|+.+ +|.-+.++.+|
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G--~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nL 289 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSG--LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNL 289 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccC--ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 69999999999999998432211 233445677778999999999999999999999987 34446789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--------CCCHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDID--------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD--------PNNEA 282 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~--------p~~~~ 282 (433)
|.+|...|++++|..++++|+++. |+-...+..++.++...+++++|+. ++++++++- |.-+.
T Consensus 290 a~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~-l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 290 AVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK-LLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHhhccccchHHHH
Confidence 999999999999999999999873 4456778889999999999999999 999998763 23466
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS 362 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~ 362 (433)
.+.+||.++..+|++.+|...++.+....... --..++ .....+.++| ..+.+.++
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~------------------~~~~~~-----~~~~~l~~la-~~~~~~k~ 424 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILREL------------------LGKKDY-----GVGKPLNQLA-EAYEELKK 424 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc------------------ccCcCh-----hhhHHHHHHH-HHHHHhcc
Confidence 88999999999999999999988443211100 112245 6667888999 88899999
Q ss_pred hhhHHHHHhhhcCC
Q 013948 363 QSRQGEDSNVSGSD 376 (433)
Q Consensus 363 ~~~A~~~~~~al~l 376 (433)
+.+|...|.++...
T Consensus 425 ~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDI 438 (508)
T ss_pred cchHHHHHHHHHHH
Confidence 99999988887655
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.41 E-value=1e-11 Score=120.57 Aligned_cols=196 Identities=9% Similarity=0.028 Sum_probs=157.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+.+.+...+.++.+..|.+. ...+.....+.++...|++++|+..++++++.+|++..++.. +..+...|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~-------~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARA-------TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLG 90 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhc
Confidence 3677788888889888877652 235567788999999999999999999999999999988775 66666665
Q ss_pred cHHHHHHHHHHHH----hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 227 QYAEAVRDCLKSI----DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 227 ~~~~A~~~~~~al----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
++..+.....+++ ..+|....++..+|.++...|++++|+. .++++++++|+++.++..++.++...|++++|..
T Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~-~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 91 DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEE-AARRALELNPDDAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 5544444444444 5677788888899999999999999999 9999999999999999999999999999999998
Q ss_pred cccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 303 WDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
++.... ...|. .+......+..+| .++..+|++++|+..|++++...|.
T Consensus 170 ~l~~~l--------------------------~~~~~-~~~~~~~~~~~la-~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 170 FMESWR--------------------------DTWDC-SSMLRGHNWWHLA-LFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHhhh--------------------------hccCC-CcchhHHHHHHHH-HHHHHCCCHHHHHHHHHHHhccccC
Confidence 877432 23331 1113345677899 9999999999999999999888773
No 80
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.41 E-value=4.3e-12 Score=131.05 Aligned_cols=146 Identities=8% Similarity=-0.089 Sum_probs=135.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 202 SFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 202 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
.......|.++.++.+||.+....|++++|...++.++++.|++..++..++.++.+.+++++|+. .+++++..+|++.
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~-~~~~~l~~~p~~~ 154 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRA-EIELYFSGGSSSA 154 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHH-HHHHHhhcCCCCH
Confidence 333445788999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC
Q 013948 282 AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP 361 (433)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g 361 (433)
.++..+|.++..+|++++|...+++ ++..+| +++.++..+| .++...|
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~--------------------------~~~~~p-----~~~~~~~~~a-~~l~~~G 202 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFER--------------------------LSRQHP-----EFENGYVGWA-QSLTRRG 202 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHH--------------------------HHhcCC-----CcHHHHHHHH-HHHHHcC
Confidence 9999999999999999999988774 344688 9999999999 9999999
Q ss_pred ChhhHHHHHhhhcCCCCCc
Q 013948 362 SQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 362 ~~~~A~~~~~~al~l~P~~ 380 (433)
+.++|...|+++++...+-
T Consensus 203 ~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 203 ALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred CHHHHHHHHHHHHHhhCcc
Confidence 9999999999999886553
No 81
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.41 E-value=1.3e-11 Score=122.02 Aligned_cols=192 Identities=7% Similarity=-0.072 Sum_probs=141.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC----CCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG----NNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~ 222 (433)
.|+|++|++.+.+.++....+ ..................+..+++.+.+.++....| +++.++..+|..+
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~------~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l 273 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFD------DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL 273 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH
Confidence 588888888888887763222 111111222222223444555566677777777777 5888999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAY--SRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE--AVKENIRMAEQKLREER 298 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~ 298 (433)
...|++++|+..++++++..|++.... ..........++.+.++. .++++++..|+++ .....+|.++...|+++
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~-~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK-LIEKQAKNVDDKPKCCINRALGQLLMKHGEFI 352 (409)
T ss_pred HHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH-HHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence 999999999999999999999887532 333344445678888888 9999999999999 88889999999999999
Q ss_pred HhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 299 QRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 299 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
+|..+++.+. ++..+| +... +..+| .++..+|+.++|...|++++.+
T Consensus 353 ~A~~~le~a~------------------------a~~~~p-----~~~~-~~~La-~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 353 EAADAFKNVA------------------------ACKEQL-----DAND-LAMAA-DAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHhH------------------------HhhcCC-----CHHH-HHHHH-HHHHHcCCHHHHHHHHHHHHHH
Confidence 9988877311 355677 6655 45889 9999999999999999998653
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.3e-12 Score=119.55 Aligned_cols=224 Identities=13% Similarity=0.052 Sum_probs=172.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
-.|++.+|+..|+++.-++|.. ....-..|..+...|++++-.......+.+......-|+--+.+++..
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~----------i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~ 313 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDN----------VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDE 313 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhh----------hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhh
Confidence 3477777777777777776655 566666666666777776666666666666655666688888888999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
+++..|+.+-.++|..+|++..++...|.++..+|+.++|+- .|+.|..+.|.....+..|-.+|...|+..+|.....
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I-aFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI-AFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH-HHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999888766543
Q ss_pred ccCCCccchhhh-hhhc-------CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 306 TTSSSHYSQESN-QSTG-------GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 306 ~~~~~~~~~~~~-~~~~-------~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
.+.......... .... ----++|...+ ++.++| ....+...+| .++...|++++++...++.+.
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P-----~Y~~AV~~~A-EL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINP-----IYTPAVNLIA-ELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCC-----ccHHHHHHHH-HHHHhhCccchHHHHHHHHHh
Confidence 322211111100 0110 01123444445 899999 9999999999 999999999999999999999
Q ss_pred CCCCccccccc
Q 013948 376 DEPGIRIGGNI 386 (433)
Q Consensus 376 l~P~~~~~~~~ 386 (433)
..|+...+..+
T Consensus 467 ~~~D~~LH~~L 477 (564)
T KOG1174|consen 467 IFPDVNLHNHL 477 (564)
T ss_pred hccccHHHHHH
Confidence 99998444433
No 83
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.8e-12 Score=116.34 Aligned_cols=192 Identities=19% Similarity=0.253 Sum_probs=145.6
Q ss_pred HHHHHHHHhhhhCC---CCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCccc
Q 013948 16 IVRSFLHFLDSVEP---APGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQ 92 (433)
Q Consensus 16 ~~~~~~~~l~~~~~---~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
++..++.|++.... +.....+.++.|++|++.+|.+++++.+.-.. ..+..++......-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~~esleva~qc~e~~f~~~~~~~~~~~~-~~~l~~~~~~~~~~~--------------- 69 (304)
T KOG0553|consen 6 LAAAIIQFLKQKSSFGWISEDGAESLEVAIQCLEAAFGFRRDDVDRAEG-TTLLDSFESAERHPV--------------- 69 (304)
T ss_pred HHHHHHHhHHHHhhcCCCCCcchhHHHHhHHHHHHHhCcchhhcccccc-ccHHHHHHHhccCcc---------------
Confidence 88888999987764 34447788999999999999999999854333 334444444433000
Q ss_pred CCCccchhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhcccccc
Q 013948 93 NMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAY 172 (433)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 172 (433)
... ...+ .......++..+......++|.+|+..|.+||.++|.+
T Consensus 70 -------------~~~----------~~~e-------~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n----- 114 (304)
T KOG0553|consen 70 -------------EIL----------TPEE-------DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN----- 114 (304)
T ss_pred -------------ccc----------ChHh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-----
Confidence 000 0000 00011111111111113589999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 173 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
+-.|.+++.+|.+.|.++.|++.++.||.++|....+|..||.+|+.+|++++|++.|+++|.++|++...+.+|
T Consensus 115 -----AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 115 -----AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred -----chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHcCCHH
Q 013948 253 GLAYYAQGNYN 263 (433)
Q Consensus 253 g~~~~~~g~~~ 263 (433)
..+-..+++..
T Consensus 190 ~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 190 KIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhcCCC
Confidence 87777766655
No 84
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.37 E-value=2e-11 Score=107.70 Aligned_cols=175 Identities=14% Similarity=0.130 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHH
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEA 231 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 231 (433)
.+...+-+....+|.+ ..+ ..++..++..|+-+.+..+..++...+|.+...+..+|......|+|.+|
T Consensus 51 ~a~~al~~~~~~~p~d----------~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A 119 (257)
T COG5010 51 GAAAALGAAVLRNPED----------LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEA 119 (257)
T ss_pred HHHHHHHHHHhcCcch----------HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHH
Confidence 3444455555555655 667 88899999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Q 013948 232 VRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSH 311 (433)
Q Consensus 232 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 311 (433)
+..++++..++|+++++|..+|.+|.+.|++++|.. .|.+++++.|+++.+..+++..+...|+.+.|......+.
T Consensus 120 ~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~-ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~--- 195 (257)
T COG5010 120 VSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR-AYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY--- 195 (257)
T ss_pred HHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHH-HHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH---
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999988765322
Q ss_pred cchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 312 YSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 312 ~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
..-+ .+..+..+++ .+...+|++++|...-
T Consensus 196 -----------------------l~~~-----ad~~v~~NLA-l~~~~~g~~~~A~~i~ 225 (257)
T COG5010 196 -----------------------LSPA-----ADSRVRQNLA-LVVGLQGDFREAEDIA 225 (257)
T ss_pred -----------------------hCCC-----CchHHHHHHH-HHHhhcCChHHHHhhc
Confidence 1223 5778888999 8899999999986654
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.36 E-value=1.1e-11 Score=130.30 Aligned_cols=170 Identities=9% Similarity=0.010 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.+...+..+.+.++.|+++.|+..|+++++.+|+++.....+..++...|++++|+.++++++.-.|........+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 37889999999999999999999999999999999655448889999999999999999999943444555555558899
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccC
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF 336 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~ 336 (433)
...|+|++|++ .|+++++.+|+++.++..++.++...++.++|.....++. ..
T Consensus 113 ~~~gdyd~Aie-ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~--------------------------~~ 165 (822)
T PRK14574 113 RNEKRWDQALA-LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA--------------------------ER 165 (822)
T ss_pred HHcCCHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc--------------------------cc
Confidence 99999999999 9999999999999999999999999999998888766533 34
Q ss_pred CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 337 NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 337 ~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+| +.... ..++ .++..+++..+|++.|+++++++|++
T Consensus 166 dp-----~~~~~-l~la-yL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 166 DP-----TVQNY-MTLS-YLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred Cc-----chHHH-HHHH-HHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 45 43332 3344 44444455545666666666666665
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.35 E-value=7.9e-12 Score=121.42 Aligned_cols=199 Identities=13% Similarity=0.067 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH----HHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS----KAYSR 251 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~ 251 (433)
.....+..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+.++++++...|..+ ..|..
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 33677888999999999999999999999999999999999999999999999999999999999987543 35668
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHH-HH-HH---HHHHHHHH------HHHHhcccccccCCCc---cc--hh
Q 013948 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV-KE-NI---RMAEQKLR------EERQRTGWDQTTSSSH---YS--QE 315 (433)
Q Consensus 252 lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~-~~-~l---~~~~~~~~------~~~~a~~~~~~~~~~~---~~--~~ 315 (433)
+|.++...|++++|+. .|++++...|..... .. .. ...+...| +++............. .. ..
T Consensus 192 la~~~~~~G~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 270 (355)
T cd05804 192 LALFYLERGDYEAALA-IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHA 270 (355)
T ss_pred HHHHHHHCCCHHHHHH-HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 9999999999999999 999998776622111 11 11 11111112 1211111111000000 00 01
Q ss_pred hhhhhcCCCCCCCCCcc-cccCCC-----CCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 316 SNQSTGGFRSHGTPPSF-TMPFNT-----NALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 316 ~~~~~~~~~~~~A~~~~-al~~~p-----~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
...+...|+.+.|...+ .+.... ..............+ .++...|++++|+..+..++.+
T Consensus 271 a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A-~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 271 ALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEA-LYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHH-HHHHHcCCHHHHHHHHHHHHHH
Confidence 33456668888877777 221111 001113455566677 7788999999999999988765
No 87
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.33 E-value=7.7e-12 Score=103.71 Aligned_cols=108 Identities=18% Similarity=0.102 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 199 ELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 199 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
+.|++++..+|++....+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+. +++++++.+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAID-AYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 279 NNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
.++..+..+|.++...|++++|..+++.+
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999998887643
No 88
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.32 E-value=6e-11 Score=95.74 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 251 (433)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|+.++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999877 5789999999999999999999999999998885 688999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 252 LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 252 lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
+|.++...|++++|+. +++++++..|++..+...
T Consensus 82 ~~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAKA-TLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHHH-HHHHHHHHCcCChhHHHH
Confidence 9999999999999999 999999999998876543
No 89
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3.3e-10 Score=99.29 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=131.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+.+.|..++++.-+.+|.+ ..+....|..+...|++++|+++|+..+.-+|.+..++-..-.+...+|
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S----------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGS----------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCC----------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence 588999999999999888887 7888889999999999999999999999999999999998888889999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
+..+|++.+..-++..+.++++|..++.+|...|+|++|.- |+++.+-+.|-++-....++.++.-+|..
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f-ClEE~ll~~P~n~l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF-CLEELLLIQPFNPLYFQRLAEVLYTQGGA 204 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999888763
No 90
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=4.1e-10 Score=98.66 Aligned_cols=196 Identities=10% Similarity=-0.025 Sum_probs=165.3
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
.+.++-+++....+.-.+.. ...++....+-....+....|+..-|..++++.....|++...--..|..+...|+
T Consensus 26 rnseevv~l~~~~~~~~k~~----~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG----ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc----ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc
Confidence 35666777777766654432 01122233444455567788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+++|+++|+..++-+|.+..++-+.-.+...+|+--+|++ .+...++..++|.++|..++.+|..+|++++|..+++.
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk-~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE- 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK-ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE- 179 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH-
Confidence 9999999999999999999999998888999999999999 99999999999999999999999999999999998774
Q ss_pred CCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC---hhhHHHHHhhhcCCCCCc
Q 013948 308 SSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS---QSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~---~~~A~~~~~~al~l~P~~ 380 (433)
.+-.+| .++..+..+| .++..+|- ++-|.++|.++++++|.+
T Consensus 180 -------------------------~ll~~P-----~n~l~f~rla-e~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 180 -------------------------LLLIQP-----FNPLYFQRLA-EVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred -------------------------HHHcCC-----CcHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 355678 8888888999 87777764 677899999999999965
No 91
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=9.8e-11 Score=109.58 Aligned_cols=122 Identities=33% Similarity=0.505 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---------------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
+......|+.+++.|+|..|+..|++|+..-+.+ ..++.|++.|+.++++|.+|+..+.++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 6667788999999999999999999998764422 3579999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 013948 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 243 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 300 (433)
|+|..++|+.|.++..+|+|+.|+. .|+++++++|+|..+...|..+..+...+...
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~-df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARD-DFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999888876655
No 92
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.29 E-value=7.8e-11 Score=113.81 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+|++|+.+|+++|.++|.+ ..+++.+|.++...|++++|+..+++++.++|+++.+|+.+|.++..+|
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~----------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNN----------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 489999999999999999988 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 260 (433)
+|++|+..|+++++++|+++.+...++.|...+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988876663
No 93
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.28 E-value=3.3e-11 Score=109.50 Aligned_cols=191 Identities=24% Similarity=0.262 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
-....|+-|+++|+|++||++|.+++..+|.++..+.++|.+|+++++|..|...|..|+.++..+..+|.+.|.+-..+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH--HHHhc-ccccccC----CCccchhhhhhhcCCCCCCCCCcc
Q 013948 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE--ERQRT-GWDQTTS----SSHYSQESNQSTGGFRSHGTPPSF 332 (433)
Q Consensus 260 g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~a~-~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~ 332 (433)
|...+|.+ .++.+|.+.|++.+....++.+...... ..++. .+..+.. ..+....+..+...|.++-++..+
T Consensus 179 g~~~EAKk-D~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~ 257 (536)
T KOG4648|consen 179 GNNMEAKK-DCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDV 257 (536)
T ss_pred hhHHHHHH-hHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEe
Confidence 99999999 9999999999988877777666542221 11111 1111111 111112245566668888888887
Q ss_pred --ccc--CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 333 --TMP--FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 333 --al~--~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
-+. .+.+..+.+ + ..+.....++.++...-+++-++|..
T Consensus 258 ~~~~A~~~~~~~L~~~--------~-~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 258 VSPRATIDDSNQLRIS--------D-EDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred eccccccCccccCccc--------H-HHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 222 222111111 1 22444456666776666777776665
No 94
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.26 E-value=1.3e-10 Score=88.66 Aligned_cols=99 Identities=43% Similarity=0.712 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
+++.+|.+++..|++++|+..+.++++..|.+..+++.+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCC
Q 013948 260 GNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 260 g~~~~A~~~~~~~al~~~p~ 279 (433)
|++++|.. ++.++++..|.
T Consensus 82 ~~~~~a~~-~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALE-AYEKALELDPN 100 (100)
T ss_pred HhHHHHHH-HHHHHHccCCC
Confidence 99999999 99999988873
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=2.4e-10 Score=108.98 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
....++|..+..++..|++++|+..++..+...|+++.++-..+.++.+.++..+|++.+++++.++|..+..++++|++
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 44778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccccc
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMP 335 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~ 335 (433)
+.+.|++.+|+. .++..+..+|+++..|..|+.+|..+|+..+
T Consensus 384 ll~~g~~~eai~-~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~------------------------------------ 426 (484)
T COG4783 384 LLKGGKPQEAIR-ILNRYLFNDPEDPNGWDLLAQAYAELGNRAE------------------------------------ 426 (484)
T ss_pred HHhcCChHHHHH-HHHHHhhcCCCCchHHHHHHHHHHHhCchHH------------------------------------
Confidence 999999999999 9999999999999999999999988876553
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
+...++ ..+.-.|++++|+..+.++-+.
T Consensus 427 ------------a~~A~A-E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 427 ------------ALLARA-EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------------HHHHHH-HHHHhCCCHHHHHHHHHHHHHh
Confidence 444556 6666678888888888777654
No 96
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.1e-10 Score=102.80 Aligned_cols=130 Identities=23% Similarity=0.284 Sum_probs=118.7
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh-
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH- 226 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~- 226 (433)
...+.-+.-++..|+.+|++ .+.|..||.+|+..|++..|...|.+|+++.|+++.++..+|.+++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d----------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~ 205 (287)
T COG4235 136 QEMEALIARLETHLQQNPGD----------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG 205 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCC----------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 45778888899999999998 8999999999999999999999999999999999999999999988766
Q ss_pred --cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 227 --QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 227 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
...++...++++++++|.+..+.+.||..+++.|+|.+|+. .++..++..|.+..-...+-
T Consensus 206 ~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~-~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 206 QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA-AWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcCCCCCchHHHHH
Confidence 46889999999999999999999999999999999999999 99999999987765444443
No 97
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.26 E-value=2.7e-11 Score=100.09 Aligned_cols=104 Identities=13% Similarity=-0.003 Sum_probs=97.5
Q ss_pred HHHhc-CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 204 AIALC-GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 204 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
...+. ++.-+..+.+|..++..|++++|...|+.+..++|.++..|++||.|+..+|+|++|+. .|.+++.++|+++.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~-aY~~A~~L~~ddp~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIY-AYGRAAQIKIDAPQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcCCCCch
Confidence 44566 77888999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccC
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
.++++|.|+..+|+.+.|...++.+.
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999988877543
No 98
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.25 E-value=3.2e-10 Score=98.21 Aligned_cols=106 Identities=22% Similarity=0.386 Sum_probs=95.8
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHH
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 250 (433)
.+..+..++.+|..+...|++++|+.+|++++...|+. ..+++++|.++...|++++|+..+.+++...|.+..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34558889999999999999999999999999987764 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHHHhhCCCC
Q 013948 251 RLGLAYYAQGN--------------YNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 251 ~lg~~~~~~g~--------------~~~A~~~~~~~al~~~p~~ 280 (433)
.+|.++...|+ +++|+. ++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~-~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAE-YWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHH-HHHHHHhhCchh
Confidence 99999999887 577888 888888888876
No 99
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.25 E-value=4.2e-11 Score=86.82 Aligned_cols=66 Identities=47% Similarity=0.739 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhCC
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG-NYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~~al~~~p 278 (433)
+..|..+|.++...|++++|+.+|.++++++|+++.+++++|.++..+| ++++|+. .++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~-~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE-DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH-HHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH-HHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 4555555 5555555554
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.25 E-value=6.7e-10 Score=115.97 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=170.6
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|++..+.+++..|+....++..|.|+..-.....+.. +
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~l---------------------------v-------- 87 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNL---------------------------L-------- 87 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhh---------------------------h--------
Confidence 45679999999999999999999666655543333222221111 0
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
...+......++ .+++++...+...+.+ -.+++.+|.||-+.|+
T Consensus 88 -------------------------~~l~~~~~~~~~-~~ve~~~~~i~~~~~~----------k~Al~~LA~~Ydk~g~ 131 (906)
T PRK14720 88 -------------------------NLIDSFSQNLKW-AIVEHICDKILLYGEN----------KLALRTLAEAYAKLNE 131 (906)
T ss_pred -------------------------hhhhhcccccch-hHHHHHHHHHHhhhhh----------hHHHHHHHHHHHHcCC
Confidence 001111123466 6677777777667766 6799999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc--------------------CCCcHHH-----
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI--------------------DPNYSKA----- 248 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------------~p~~~~~----- 248 (433)
+++|...|+++++.+|+++.++.++|..|... +.++|+.++.+|+.. +|++...
T Consensus 132 ~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~ 210 (906)
T PRK14720 132 NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE 210 (906)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHH
Confidence 99999999999999999999999999999999 999999999988765 3443222
Q ss_pred ---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Q 013948 249 ---------------YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYS 313 (433)
Q Consensus 249 ---------------~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 313 (433)
+..+=.+|...++|++++. .++.+|+++|.|..+...++.||. +.|..
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~-iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-------------- 273 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY-ILKKILEHDNKNNKAREELIRFYK--EKYKD-------------- 273 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH-HHHHHHhcCCcchhhHHHHHHHHH--HHccC--------------
Confidence 2223377788888999999 999999999999999999988886 44431
Q ss_pred hhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccccc
Q 013948 314 QESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNI 386 (433)
Q Consensus 314 ~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~ 386 (433)
- ...+-+..+. .+-.....+..++..|++-+..+|++ -++.+.
T Consensus 274 ------------------------~-----~~~ee~l~~s-~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~~W 317 (906)
T PRK14720 274 ------------------------H-----SLLEDYLKMS-DIGNNRKPVKDCIADFEKNIVFDTGNFVYHRTW 317 (906)
T ss_pred ------------------------c-----chHHHHHHHh-ccccCCccHHHHHHHHHHHeeecCCCEEEEcCC
Confidence 1 3334455566 45444467789999999999999998 444433
No 101
>PRK11906 transcriptional regulator; Provisional
Probab=99.23 E-value=1.4e-10 Score=111.09 Aligned_cols=171 Identities=16% Similarity=0.076 Sum_probs=135.8
Q ss_pred HhhhhCCCCCCCchhHHHHHHHHHHhh---cCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccch
Q 013948 23 FLDSVEPAPGVDLEGLEVARECLTEVF---KLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFS 99 (433)
Q Consensus 23 ~l~~~~~~~~~~~~~~e~A~~~~~kAl---~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (433)
||++.......+++..+.|..+|.+|+ ++||+++.+|.. +.. .+-.....++.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~---lA~---~h~~~~~~g~~------------------ 314 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCL---LAE---CHMSLALHGKS------------------ 314 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHH---HHH---HHHHHHHhcCC------------------
Confidence 788888888899999999999999999 999999833221 111 11111110000
Q ss_pred hhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHH
Q 013948 100 EASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAE 179 (433)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 179 (433)
. ...+..+|....+++++++|.+ +.
T Consensus 315 --------------------~-------------------------~~~~~~~a~~~A~rAveld~~D----------a~ 339 (458)
T PRK11906 315 --------------------E-------------------------LELAAQKALELLDYVSDITTVD----------GK 339 (458)
T ss_pred --------------------C-------------------------chHHHHHHHHHHHHHHhcCCCC----------HH
Confidence 0 1357788999999999999988 89
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA-YYA 258 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~ 258 (433)
++..+|.+....++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|++.++++++++|.-..+-...-.+ .+-
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999877665554444 555
Q ss_pred cCCHHHHHHHHHHHH
Q 013948 259 QGNYNDAIEKGFKKA 273 (433)
Q Consensus 259 ~g~~~~A~~~~~~~a 273 (433)
..-.+.|+. .|-+-
T Consensus 420 ~~~~~~~~~-~~~~~ 433 (458)
T PRK11906 420 PNPLKNNIK-LYYKE 433 (458)
T ss_pred CCchhhhHH-HHhhc
Confidence 677888888 66543
No 102
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=5e-11 Score=86.40 Aligned_cols=66 Identities=38% Similarity=0.541 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cHHHHHHHHHHHHhcCC
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH-QYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 243 (433)
+..|..+|.+++..|+|++|+..|+++++++|+++.+|+++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 7889999999999999999999999999999999999999999999999 89999999999999998
No 103
>PRK15331 chaperone protein SicA; Provisional
Probab=99.21 E-value=9.4e-10 Score=91.40 Aligned_cols=109 Identities=12% Similarity=0.091 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
++..+..+..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
|+..+|+.+.|.. +|+.++. .|.+..+..
T Consensus 114 C~l~l~~~~~A~~-~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 114 CQLLMRKAAKARQ-CFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHhCCHHHHHH-HHHHHHh-CcchHHHHH
Confidence 9999999999999 9999998 465544433
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=9.9e-10 Score=104.84 Aligned_cols=137 Identities=22% Similarity=0.214 Sum_probs=124.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+++.|+..++..+...|+| ++.+...+.+++..++..+|++.+++++.++|+.+..++++|.+|++.|
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N----------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDN----------PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred hcccchHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence 489999999999999999988 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL 294 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (433)
++.+|+..++..+..+|+++..|..||.+|..+|+-.+|.. .+.+.+.+..+-..+...+..+....
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-ARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998 88888877776666666555554433
No 105
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.19 E-value=5.2e-10 Score=96.48 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQ 224 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~ 224 (433)
+.+..+...+.+.++..+ ....+..++.+|.++...|++++|+..|.+++.+.|+. +.+|+++|.++..
T Consensus 13 ~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 13 KTFTIVADILLRILPTTS--------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cccccchhhhhHhccCCc--------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 345566666655544322 23347889999999999999999999999999987763 4689999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhhCCCCH
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY-------AQGNYN-------DAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~-------~A~~~~~~~al~~~p~~~ 281 (433)
.|++++|+..|+++++++|.+...+..+|.++. .+|+++ +|+. ++++++..+|.+.
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~-~~~~a~~~~p~~~ 154 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE-YWKQAIALAPGNY 154 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH-HHHHHHHhCcccH
Confidence 999999999999999999999999999999999 777776 5555 6667777788654
No 106
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=8.6e-10 Score=93.24 Aligned_cols=118 Identities=34% Similarity=0.620 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
+..+..-|+-++..|+|++|...|..||.++|.. ..+|.++|.++++++.++.|+..+.++|+++|.+..++.+.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 6677788999999999999999999999999986 45889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
|.+|.++..|++|+. .|++.++.+|....+...+.++--....
T Consensus 175 Aeayek~ek~eeale-DyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALE-DYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred HHHHHhhhhHHHHHH-HHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 999999999999999 9999999999998888877766544433
No 107
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.18 E-value=5.6e-10 Score=118.15 Aligned_cols=242 Identities=10% Similarity=-0.020 Sum_probs=187.7
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 224 (433)
..|++++|+.+|++.....-. |+ ...+..+...+...|++++|...+...++.. +.+..++..+...|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~--------pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVS--------ID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCC--------CC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 368999999999988664211 11 4578888888999999999999999998875 5577888899999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--DPNNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
.|++++|...|++..+ .+...|..+...|.+.|+.++|++ .|++..+. .| +...+..+..++...|..+++..
T Consensus 373 ~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~-lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 373 WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVE-MFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999999999998754 356789999999999999999999 99998764 34 45567777778888899998888
Q ss_pred cccccCC----Ccc----chhhhhhhcCCCCCCCCCcc-cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 303 WDQTTSS----SHY----SQESNQSTGGFRSHGTPPSF-TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 303 ~~~~~~~----~~~----~~~~~~~~~~~~~~~A~~~~-al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.+..... .|. ......|.+.|++++|.+.+ .+...| +. ..|..+. ..+...|+.+.|...+++.
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p-----~~-~~~~~Ll-~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP-----TV-NMWAALL-TACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCC-----CH-HHHHHHH-HHHHHcCCcHHHHHHHHHH
Confidence 8766542 121 12256788889999999988 766777 54 4688888 8889999999999999999
Q ss_pred cCCCCCccccccccccc-c-cCCcHHHHHHHHHHHhh
Q 013948 374 GSDEPGIRIGGNINLNF-G-ENMPEDITGALRSMMEM 408 (433)
Q Consensus 374 l~l~P~~~~~~~~~~~l-~-~~~~~~~~~a~~~~~~~ 408 (433)
++++|++.....++..+ . ...+++..+.++.|.++
T Consensus 521 ~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999983333333333 2 56777777777777654
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.17 E-value=3.7e-10 Score=117.90 Aligned_cols=193 Identities=7% Similarity=-0.033 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH--------
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-------- 246 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------- 246 (433)
+....++..+...+...+++++|+..+..+++.+|+...+|+.+|.++.+.+++.++... .++...+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 344889999999999999999999999999999999999999999999999988777666 6666555554
Q ss_pred -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Q 013948 247 -----------KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE 315 (433)
Q Consensus 247 -----------~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 315 (433)
.+++.+|.||-++|++++|.. .|+++++++|+++.+..++|..+... +.++|...+.++...
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~-~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKG-VWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 899999999999999999999 99999999999999999999999999 999999987765422
Q ss_pred hhhhhcCCCCCCCCCcc--cccCCCCCC---------------CccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 316 SNQSTGGFRSHGTPPSF--TMPFNTNAL---------------PTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 316 ~~~~~~~~~~~~A~~~~--al~~~p~~~---------------~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
|...++|.++.+.- .+..+|..- -......+..+- ..|...+++++++..++.+++.+|
T Consensus 179 ---~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~-~~y~~~~~~~~~i~iLK~iL~~~~ 254 (906)
T PRK14720 179 ---FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY-EPYKALEDWDEVIYILKKILEHDN 254 (906)
T ss_pred ---HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH-HHHhhhhhhhHHHHHHHHHHhcCC
Confidence 33334444444433 444555100 002223333444 667788899999999999999999
Q ss_pred Cc
Q 013948 379 GI 380 (433)
Q Consensus 379 ~~ 380 (433)
.+
T Consensus 255 ~n 256 (906)
T PRK14720 255 KN 256 (906)
T ss_pred cc
Confidence 99
No 109
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.16 E-value=2.2e-10 Score=115.13 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=105.9
Q ss_pred HHHHHHhhhhCCCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCcc
Q 013948 18 RSFLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAK 97 (433)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (433)
.++-.||++.......+++.++.|+.||++|+++||+++.++ ..+...+... . .
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~---A~la~~~~~~----~-~------------------ 391 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQ---AEKALADIVR----H-S------------------ 391 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHH----H-h------------------
Confidence 455667777766777789999999999999999999997222 2111111110 0 0
Q ss_pred chhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHH--Hhhccccccchh
Q 013948 98 FSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINE--MEKSGAHAYNQK 175 (433)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 175 (433)
|.. ....++..+....++++.+ +|..
T Consensus 392 -----------------~~~---------------------------~~~~~l~~a~~~~~~a~al~~~~~~-------- 419 (517)
T PRK10153 392 -----------------QQP---------------------------LDEKQLAALSTELDNIVALPELNVL-------- 419 (517)
T ss_pred -----------------cCC---------------------------ccHHHHHHHHHHHHHhhhcccCcCC--------
Confidence 000 0123455666666666664 3332
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK 247 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 247 (433)
+.++..+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 420 --~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 --PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 56777788888888889999999999998888 5788888898888899999999999999999888774
No 110
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.16 E-value=1.5e-10 Score=87.54 Aligned_cols=82 Identities=29% Similarity=0.440 Sum_probs=74.1
Q ss_pred HccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
.+|+|+.|+..|+++++..|. +..+++.+|.|+++.|+|++|+..+++ +..+|.+...++.+|.|+..+|+|++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 567888899999999999999999999 88999999999999999999999999999
Q ss_pred HHHHHH
Q 013948 268 KGFKKA 273 (433)
Q Consensus 268 ~~~~~a 273 (433)
.|+++
T Consensus 80 -~l~~~ 84 (84)
T PF12895_consen 80 -ALEKA 84 (84)
T ss_dssp -HHHHH
T ss_pred -HHhcC
Confidence 99875
No 111
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.16 E-value=7.3e-09 Score=92.11 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHH
Q 013948 120 KDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIE 199 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 199 (433)
...++......+.. |+|.+|+..|++++...|.. +....+.+.+|.+++..|++++|+.
T Consensus 5 ~~~lY~~a~~~~~~--------------g~y~~Ai~~f~~l~~~~P~s-------~~a~~A~l~la~a~y~~~~y~~A~~ 63 (203)
T PF13525_consen 5 AEALYQKALEALQQ--------------GDYEEAIKLFEKLIDRYPNS-------PYAPQAQLMLAYAYYKQGDYEEAIA 63 (203)
T ss_dssp HHHHHHHHHHHHHC--------------T-HHHHHHHHHHHHHH-TTS-------TTHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44556666666655 99999999999999999975 5558899999999999999999999
Q ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHHhhc-----------HHHHHHHHHHHHhcCCCcHH-----------------H
Q 013948 200 LYSFAIALCGNN---AVYYSNRAAAYTQIHQ-----------YAEAVRDCLKSIDIDPNYSK-----------------A 248 (433)
Q Consensus 200 ~~~~al~~~p~~---~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~-----------------~ 248 (433)
.|++.++..|++ ..+++.+|.+++.+.. ..+|+..|+..+...|++.. -
T Consensus 64 ~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 64 AYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 4689999999877643 35899999999999998532 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHh
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREERQR 300 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a 300 (433)
-+.+|..|++.|.|..|+. .++.+++..|+.+ .++..+..++..+|....+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~-r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAII-RFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHH-HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHcccHHHHHH-HHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3446888999999999999 9999999999875 5677888888888887744
No 112
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.15 E-value=2e-09 Score=116.49 Aligned_cols=241 Identities=10% Similarity=-0.015 Sum_probs=158.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL----CGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~ 222 (433)
.|++++|+.+|.+.....-. |+ ...|..+...+.+.|++++|.+.|.+.... .| +...|..+-.+|
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~--------PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay 589 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVK--------PD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKAC 589 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHH
Confidence 57888888888777654211 11 456777777778888888888888877652 34 456677777778
Q ss_pred HHhhcHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDID-PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--DPNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
.+.|++++|++.|+...+.+ +.+...|..+...|.+.|++++|+. .|.+..+. .| +...+..+...+.+.|+.++
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~-lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS-IYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHH
Confidence 88888888888888887776 4466777778888888888888888 88777764 34 35567777777777777777
Q ss_pred hcccccccCC---Ccc----chhhhhhhcCCCCCCCCCcc-cc---cCCCCCCCccHHHHHHHHhhcccccCCChhhHHH
Q 013948 300 RTGWDQTTSS---SHY----SQESNQSTGGFRSHGTPPSF-TM---PFNTNALPTDIASMLMNMASNMPQAQPSQSRQGE 368 (433)
Q Consensus 300 a~~~~~~~~~---~~~----~~~~~~~~~~~~~~~A~~~~-al---~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~ 368 (433)
|......+.. .+. ......|...|++++|+..| .+ ...| +. ..|..+. ..|...|+.++|++
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-----dv-vtyN~LI-~gy~k~G~~eeAle 740 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-----TV-STMNALI-TALCEGNQLPKALE 740 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----CH-HHHHHHH-HHHHHCCCHHHHHH
Confidence 7776555432 111 11245677778888888777 22 3445 43 4577777 77888888888888
Q ss_pred HHhhhc--CCCCCcccccccccccc-cCCcHHHHHHHHHHH
Q 013948 369 DSNVSG--SDEPGIRIGGNINLNFG-ENMPEDITGALRSMM 406 (433)
Q Consensus 369 ~~~~al--~l~P~~~~~~~~~~~l~-~~~~~~~~~a~~~~~ 406 (433)
.+++.. ...|+...+..++..++ ....+.....+..|.
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888654 34566644444443332 344444444444443
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.13 E-value=5.5e-10 Score=113.88 Aligned_cols=140 Identities=12% Similarity=0.111 Sum_probs=120.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..+++.|......+-+..|.. ...+.|..+|..+...+++.+|+..|+.+++.+|.+..+|..+|.+|...|
T Consensus 539 ~~~we~a~~I~l~~~qka~a~--------~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 539 ESTWEEAFEICLRAAQKAPAF--------ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG 610 (1238)
T ss_pred cccHHHHHHHHHHHhhhchHH--------HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC
Confidence 567888888866666655432 124567779999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
++..|++.|.++..++|.+..+.+..+.+....|+|.+|+. .+...+............++.++.++.
T Consensus 611 ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald-~l~~ii~~~s~e~~~q~gLaE~~ir~a 678 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD-ALGLIIYAFSLERTGQNGLAESVIRDA 678 (1238)
T ss_pred ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 999988877666666666666665543
No 114
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=3.9e-09 Score=103.57 Aligned_cols=217 Identities=11% Similarity=0.058 Sum_probs=170.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+-++|..+.+.++..++.+ .-.|..+|.++...++|++|+++|+.|+.+.|++..+|..++.+..+++
T Consensus 54 lg~~~ea~~~vr~glr~d~~S----------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR 123 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKS----------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR 123 (700)
T ss_pred ccchHHHHHHHHHHhccCccc----------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 688999999999999988887 7789999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---CCCHHH-----HHHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD---PNNEAV-----KENIRMAEQKLREER 298 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~---p~~~~~-----~~~l~~~~~~~~~~~ 298 (433)
+++.....-.+.+.+.|.....|+..+..+...|++..|.. .++...+.. |..... ......+....|..+
T Consensus 124 d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~-il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q 202 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE-ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQ 202 (700)
T ss_pred hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHH
Confidence 99999999999999999999999999999999999999999 877766554 433222 222333344445555
Q ss_pred HhcccccccCCCcc------chhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHH-HH
Q 013948 299 QRTGWDQTTSSSHY------SQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG-ED 369 (433)
Q Consensus 299 ~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~-~~ 369 (433)
++......-..... ...+.+++..+++++|+..+ .+..+| ++...+..+- .++..-.+.-+++ ..
T Consensus 203 ~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-----dn~~Yy~~l~-~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 203 KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-----DNLDYYEGLE-KALGKIKDMLEALKAL 276 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-----hhHHHHHHHH-HHHHHHhhhHHHHHHH
Confidence 55554333221111 12267889999999999999 889999 9999988888 7774223334444 55
Q ss_pred HhhhcCCCCCc
Q 013948 370 SNVSGSDEPGI 380 (433)
Q Consensus 370 ~~~al~l~P~~ 380 (433)
|...-+.-|..
T Consensus 277 y~~ls~~y~r~ 287 (700)
T KOG1156|consen 277 YAILSEKYPRH 287 (700)
T ss_pred HHHHhhcCccc
Confidence 55555554544
No 115
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=6.8e-10 Score=110.75 Aligned_cols=123 Identities=23% Similarity=0.236 Sum_probs=88.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
+.-++|..++.++-.++|.. +..|+..|.++...|++.+|.+.|..|+.++|+++.+...+|.++.+.|+
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~----------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLS----------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred CCchHHHHHHHHHHhcchhh----------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence 45556666666666666655 67777777777777777777777777777777777777777777777776
Q ss_pred HHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 228 YAEAVR--DCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 228 ~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
..-|.. .+..+++++|.++++|+.+|.++..+|+.++|.+ +|..++++.+.+|
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae-cf~aa~qLe~S~P 788 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE-CFQAALQLEESNP 788 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH-HHHHHHhhccCCC
Confidence 666666 7777777777777777777777777777777777 7777777766554
No 116
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=1.5e-10 Score=99.01 Aligned_cols=204 Identities=16% Similarity=0.129 Sum_probs=149.3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
...+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.+++.+|.-+...|+|+.|.+.|+..++++|.+..++.+.|.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh----hhhhhcCCCCCCCCC
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE----SNQSTGGFRSHGTPP 330 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~A~~ 330 (433)
.++--|+|.-|.+ .+.+-.+-+|++|--..++-..-.+..-.+......+.........+ ...|+..=.-+...+
T Consensus 142 ~~YY~gR~~LAq~-d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~ 220 (297)
T COG4785 142 ALYYGGRYKLAQD-DLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLME 220 (297)
T ss_pred eeeecCchHhhHH-HHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHH
Confidence 9999999999999 99999999999986544444433333322222222222222221222 122332211111111
Q ss_pred cc-cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 331 SF-TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 331 ~~-al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.. +-..+.....+...+.++.+| +.+...|+.++|...|+-++..+--+
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~-K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLG-KYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHhHHH
Confidence 11 222222222345667899999 99999999999999999998765433
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=1.4e-09 Score=108.03 Aligned_cols=191 Identities=14% Similarity=0.057 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...|-....||...|+..+|.....+-++ .|+++..|..+|.+.....-|++|.+..+.. +..+.+.+|...+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~ 496 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccc
Confidence 66777788888888998899888888888 6777888888877776554455544444432 2335566666666
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFN 337 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~ 337 (433)
..++|+++.. +++..++++|-....|+.+|.+..+++++..+...+. +.+.++
T Consensus 497 ~~~~fs~~~~-hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~--------------------------rcvtL~ 549 (777)
T KOG1128|consen 497 SNKDFSEADK-HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH--------------------------RCVTLE 549 (777)
T ss_pred cchhHHHHHH-HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH--------------------------HHhhcC
Confidence 6677777777 7777777777777777777777777776665555444 156666
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccccccccc-ccCCcHHHHHHHHHHHhh
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNF-GENMPEDITGALRSMMEM 408 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l-~~~~~~~~~~a~~~~~~~ 408 (433)
| ++.++|.+++ .+|...|+..+|...+++|++-+-++ .++-|..... .-..+++...|+.++..+
T Consensus 550 P-----d~~eaWnNls-~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 550 P-----DNAEAWNNLS-TAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred C-----Cchhhhhhhh-HHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7 7777777777 66777777777777777777666444 3333332211 123444555555555443
No 118
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.11 E-value=4.4e-10 Score=80.35 Aligned_cols=64 Identities=34% Similarity=0.578 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+. +|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~-~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALA-YYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHH-HHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCcCCC
Confidence 456666666666666666666666666666666666666666666666666 6666666666653
No 119
>PLN03077 Protein ECB2; Provisional
Probab=99.10 E-value=1.5e-09 Score=117.67 Aligned_cols=236 Identities=12% Similarity=0.037 Sum_probs=167.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cCCCHHH-----------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-CGNNAVY----------- 214 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~----------- 214 (433)
.|++++|.++|++..+ .+ ...|..+...+...|++++|+..|++.+.. .|+....
T Consensus 437 ~g~~~~A~~vf~~m~~---~d----------~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 437 CKCIDKALEVFHNIPE---KD----------VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG 503 (857)
T ss_pred cCCHHHHHHHHHhCCC---CC----------eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc
Confidence 5777888777776432 11 345667777777788888888888777643 3333222
Q ss_pred -----------------------HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013948 215 -----------------------YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFK 271 (433)
Q Consensus 215 -----------------------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 271 (433)
+..+-..|.+.|+.++|...|+.. +.+...|..+...|.+.|+.++|+. .|+
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~-lf~ 578 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVE-LFN 578 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHH-HHH
Confidence 223336788888899998888875 5677889999999999999999999 999
Q ss_pred HHHhh--CCCCHHHHHHHHHHHHHHHHHHHhcccccccCC----Cccc----hhhhhhhcCCCCCCCCCcc-cccCCCCC
Q 013948 272 KALQL--DPNNEAVKENIRMAEQKLREERQRTGWDQTTSS----SHYS----QESNQSTGGFRSHGTPPSF-TMPFNTNA 340 (433)
Q Consensus 272 ~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~----~~~~~~~~~~~~~~A~~~~-al~~~p~~ 340 (433)
+..+. .|+.. .+..+-.++...|..+++..++..... .|.. .....+.+.|++++|.+.+ .+...|
T Consensus 579 ~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p-- 655 (857)
T PLN03077 579 RMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP-- 655 (857)
T ss_pred HHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC--
Confidence 98764 45544 455555667888999998888766541 2221 1246788889999999988 777777
Q ss_pred CCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcccccccccccc--cCCcHHHHHHHHHHHhh
Q 013948 341 LPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNFG--ENMPEDITGALRSMMEM 408 (433)
Q Consensus 341 ~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~~~l~--~~~~~~~~~a~~~~~~~ 408 (433)
+ +..|..+- ..+...|+.+.+....++.++++|++.....++..+. ...+++..+..+.|.++
T Consensus 656 ---d-~~~~~aLl-~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 656 ---D-PAVWGALL-NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred ---C-HHHHHHHH-HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 5 45666666 6677789999999999999999999844433333332 56777777777777654
No 120
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.10 E-value=5.1e-09 Score=87.90 Aligned_cols=119 Identities=23% Similarity=0.192 Sum_probs=100.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 223 (433)
.++...+...+++.+..+|.. +....+.+.+|.+++..|++++|+..|++++...|+. ..+.+.+|.++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s-------~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSS-------PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 478888888889888887765 3446788889999999999999999999999987665 457888999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
..|++++|+..++. +.-.+-.+.++..+|.++...|++++|+. .|++++
T Consensus 97 ~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~-~y~~Al 145 (145)
T PF09976_consen 97 QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA-AYQKAL 145 (145)
T ss_pred HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH-HHHHhC
Confidence 99999999999976 34445567788889999999999999999 999875
No 121
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.6e-09 Score=103.80 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=158.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+|++|+....+.+...|++ ..+....-.++.+.++|++|+...++-....- .....+..+.|.++++
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd----------~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDD----------EDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLN 93 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCc----------HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcc
Confidence 589999999999999998887 88899999999999999999955444322221 1223378999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
..++|+..++ .+++.+.......|++++++|+|++|+. .|+..++.+.++.+........-. +..-.+. +.+.
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydeald-iY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~~-~~q~ 166 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALD-IYQHLAKNNSDDQDEERRANLLAV--AAALQVQ-LLQS 166 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcCCchHHHHHHHHHHHH--HHhhhHH-HHHh
Confidence 9999999999 6677788899999999999999999999 999998876655443332221111 1111111 1222
Q ss_pred cCCCccc------hhhhhhhcCCCCCCCCCcc--c--------ccCCCC--CCCccHHHHHHHHhhcccccCCChhhHHH
Q 013948 307 TSSSHYS------QESNQSTGGFRSHGTPPSF--T--------MPFNTN--ALPTDIASMLMNMASNMPQAQPSQSRQGE 368 (433)
Q Consensus 307 ~~~~~~~------~~~~~~~~~~~~~~A~~~~--a--------l~~~p~--~~~~~~~~a~~~la~~~~~~~g~~~~A~~ 368 (433)
....+.+ ..+-.+...|+|.+|++.+ + ...+.+ ..-.+......+++ .+++.+|+.++|..
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla-yVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA-YVLQLQGQTAEASS 245 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH-HHHHHhcchHHHHH
Confidence 2211111 1134456668888888777 5 222221 11134556788999 99999999999999
Q ss_pred HHhhhcCCCCCc----cccccccccc
Q 013948 369 DSNVSGSDEPGI----RIGGNINLNF 390 (433)
Q Consensus 369 ~~~~al~l~P~~----~~~~~~~~~l 390 (433)
.|...+..+|-+ .+..|.+..+
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhh
Confidence 999999999988 4445656555
No 122
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.09 E-value=4.9e-09 Score=95.58 Aligned_cols=177 Identities=12% Similarity=0.044 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY---YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 251 (433)
+..++..|..++..|+|++|++.|++.+...|..+.+ .+.+|.++++.+++++|+..+++.++.+|++ +.+++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 6678889999999999999999999999999998654 5899999999999999999999999999886 578999
Q ss_pred HHHHHHHcC---------------C---HHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhcccccccCCC
Q 013948 252 LGLAYYAQG---------------N---YNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGWDQTTSSS 310 (433)
Q Consensus 252 lg~~~~~~g---------------~---~~~A~~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 310 (433)
+|.++...+ + ..+|+. .|++.++..|+.. .+...+..+...+.+.+-
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~-~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~----------- 179 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR-DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL----------- 179 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHH-HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH-----------
Confidence 999875554 1 357888 9999999999874 455555555555554442
Q ss_pred ccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhh
Q 013948 311 HYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNV 372 (433)
Q Consensus 311 ~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~ 372 (433)
..+..|.+.|.|..|+.-+ ++..-| .++ ...++.+.++ ..+..+|..++|......
T Consensus 180 ---~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-~t~-~~~eal~~l~-~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 ---SVAEYYTKRGAYVAVVNRVEQMLRDYP-DTQ-ATRDALPLME-NAYRQLQLNAQADKVAKI 237 (243)
T ss_pred ---HHHHHHHHcCchHHHHHHHHHHHHHCC-CCc-hHHHHHHHHH-HHHHHcCChHHHHHHHHH
Confidence 1235667777777777777 666666 222 5677888888 889999999999876543
No 123
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.09 E-value=3.9e-10 Score=80.61 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=60.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 246 (433)
+.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999985
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=1.7e-08 Score=92.04 Aligned_cols=165 Identities=13% Similarity=0.054 Sum_probs=134.7
Q ss_pred ChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHH
Q 013948 119 SKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI 198 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 198 (433)
+....+......+.. |++++|+..|++++..+|.. +....+.+.+|.++++.+++++|+
T Consensus 31 ~~~~~Y~~A~~~~~~--------------g~y~~Ai~~f~~l~~~yP~s-------~~a~~a~l~la~ayy~~~~y~~A~ 89 (243)
T PRK10866 31 PPSEIYATAQQKLQD--------------GNWKQAITQLEALDNRYPFG-------PYSQQVQLDLIYAYYKNADLPLAQ 89 (243)
T ss_pred CHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHHhcCCHHHHH
Confidence 455556666666554 99999999999999999875 444667899999999999999999
Q ss_pred HHHHHHHHhcCCC---HHHHHHHHHHHHHhh------------------cHHHHHHHHHHHHhcCCCcHH----------
Q 013948 199 ELYSFAIALCGNN---AVYYSNRAAAYTQIH------------------QYAEAVRDCLKSIDIDPNYSK---------- 247 (433)
Q Consensus 199 ~~~~~al~~~p~~---~~~~~~la~~~~~~~------------------~~~~A~~~~~~al~~~p~~~~---------- 247 (433)
..|++.++.+|++ ..+++.+|.++...+ ...+|+..|+..++..|+...
T Consensus 90 ~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~ 169 (243)
T PRK10866 90 AAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVF 169 (243)
T ss_pred HHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 9999999999987 578999998875554 135788999999999998532
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHhccccc
Q 013948 248 -------AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 248 -------~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
--+..|..|.+.|.|..|+. -++.+++..|+. ++++..+..++..+|..+++..+..
T Consensus 170 l~~~la~~e~~ia~~Y~~~~~y~AA~~-r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 170 LKDRLAKYELSVAEYYTKRGAYVAVVN-RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHH-HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 22345778999999999999 999999998875 6678888999999999888876543
No 125
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.07 E-value=1.9e-10 Score=107.03 Aligned_cols=275 Identities=12% Similarity=0.090 Sum_probs=184.0
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCC----CCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcc
Q 013948 33 VDLEGLEVARECLTEVFKLDSPSA----DGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGED 108 (433)
Q Consensus 33 ~~~~~~e~A~~~~~kAl~ldP~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (433)
+-.++++..+..|++|+++--++- .+|...|+.+-.+..|.++.+.-. .|-....+++.
T Consensus 28 ck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~----------------hDltlar~lgd- 90 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT----------------HDLTLARLLGD- 90 (639)
T ss_pred HhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh----------------hhHHHHHHhcc-
Confidence 456678899999999999988775 223344444555555665555110 00000001110
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Q 013948 109 WTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRV 188 (433)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~ 188 (433)
-+.....-.+++....-.|.|++|+.++.+-|+....-+ +......++|++|++|
T Consensus 91 ---------------------klGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg----Drv~e~RAlYNlgnvY 145 (639)
T KOG1130|consen 91 ---------------------KLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG----DRVLESRALYNLGNVY 145 (639)
T ss_pred ---------------------hhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh----HHHhhhHHHhhhhhhh
Confidence 001111112222222337999999999999998866543 2344588999999999
Q ss_pred HHccC--------------------HHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 189 MQSQQ--------------------YSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 189 ~~~~~--------------------~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
...|+ ++.|.++|..-+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+.
T Consensus 146 hakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia 225 (639)
T KOG1130|consen 146 HAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA 225 (639)
T ss_pred hhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHH
Confidence 87764 345566666555553322 3578899999999999999999998888775
Q ss_pred CC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHHHHHHHhcccccccCCC
Q 013948 243 PN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL----DPN--NEAVKENIRMAEQKLREERQRTGWDQTTSSS 310 (433)
Q Consensus 243 p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~----~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 310 (433)
.. ...++.++|.++..+|+++.|++ +|++.+.+ ... .....+.||.+|..+.++++|+.+..+-...
T Consensus 226 ~efGDrAaeRRA~sNlgN~hiflg~fe~A~e-hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 226 QEFGDRAAERRAHSNLGNCHIFLGNFELAIE-HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHhhhHHHHHHhhcccchhhhhhcccHhHHH-HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44 24689999999999999999999 99987654 222 3456788999999999999999886532210
Q ss_pred ccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 311 HYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 311 ~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.. .+..-. ....+++.+| +.+..+|..++|+...++.+++
T Consensus 305 Aq--------------------eL~Dri-----Ge~RacwSLg-na~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 305 AQ--------------------ELEDRI-----GELRACWSLG-NAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HH--------------------HHHHhh-----hhHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHH
Confidence 00 122223 4556888899 9999999999998777665543
No 126
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=5.1e-10 Score=96.53 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=90.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNN--AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A 265 (433)
.+.|..+...+.+.++.++.+ ..+|+.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 344666666666655566555 6788999999999999999999999999997763 46899999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 266 IEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 266 ~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
+. .+++++.++|.....+..++.++..+|+.
T Consensus 92 ~~-~~~~Al~~~~~~~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 92 LE-YYFQALERNPFLPQALNNMAVICHYRGEQ 122 (168)
T ss_pred HH-HHHHHHHhCcCcHHHHHHHHHHHHHhhHH
Confidence 99 99999999999999999999999866653
No 127
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.06 E-value=6.6e-09 Score=95.43 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=97.7
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHH
Q 013948 178 AEIFKCQGNRV-MQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYS 250 (433)
Q Consensus 178 ~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 250 (433)
...++..|..+ +..|+|++|+..|++.+...|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46777778776 56799999999999999999998 589999999999999999999999999999887 478999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 251 RLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 251 ~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
.+|.++..+|++++|+. .|+++++..|+...+...
T Consensus 222 klg~~~~~~g~~~~A~~-~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKA-VYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHHHHHcCCHHHHHH-HHHHHHHHCcCCHHHHHH
Confidence 99999999999999999 999999999998765443
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=3.1e-10 Score=112.60 Aligned_cols=181 Identities=16% Similarity=0.155 Sum_probs=130.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|+..+|..+..+-++..| + +..|..+|.+.....=|++|.+..+.. ++.+...+|......
T Consensus 436 ~lg~~~kaeei~~q~lek~~-d----------~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~ 498 (777)
T KOG1128|consen 436 LLGQHGKAEEINRQELEKDP-D----------PRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSN 498 (777)
T ss_pred HhcccchHHHHHHHHhcCCC-c----------chhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccc
Confidence 35666666666666666322 2 666777777766555555555555442 334666667667777
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
++|+++..+++..++++|-....|+.+|.+..++++++.|.. +|..++.++|++.++|.+++.+|..+++..+|.....
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~-aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK-AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH-HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 888888888888888888888888888888888888888888 8888888888888888888888888888777766654
Q ss_pred ccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 306 TTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
. |++.+- +++..|.|.- .+..+.|.+++|+..|.+.+.+
T Consensus 578 E--------------------------AlKcn~-----~~w~iWENym-lvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 578 E--------------------------ALKCNY-----QHWQIWENYM-LVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred H--------------------------HhhcCC-----CCCeeeechh-hhhhhcccHHHHHHHHHHHHHh
Confidence 3 334444 5556666666 6667778888888888887655
No 129
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1e-08 Score=93.93 Aligned_cols=246 Identities=15% Similarity=0.118 Sum_probs=166.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..||+.|+.+++-.+..+.+. .......+|.|++..|+|++|+..|+-+...+.-+...+.++|.|++-+|
T Consensus 35 ~rDytGAislLefk~~~~~EE---------E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREE---------EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred cccchhHHHHHHHhhccchhh---------hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH
Confidence 468999999888777554332 24556668999999999999999999998877667899999999999999
Q ss_pred cHHHHHHHHHHHH--------------hcCC------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 227 QYAEAVRDCLKSI--------------DIDP------------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 227 ~~~~A~~~~~~al--------------~~~p------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
.|.+|.....++- +++. +..+-.+.|+.+++..-.|.+|+. .|++++.-+|+.
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAId-vYkrvL~dn~ey 184 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAID-VYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH-HHHHHHhcChhh
Confidence 9999988766542 2221 123445567778888888999999 999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCccch-h-h-----h---hh------------hcC----------------
Q 013948 281 EAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQ-E-S-----N---QS------------TGG---------------- 322 (433)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~-----~---~~------------~~~---------------- 322 (433)
...-..++.||.++.-++-+......-.....+. . . + .+ ...
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 8888888888888766555444322211111000 0 0 0 00 000
Q ss_pred ---CCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc----ccccccccccc-cCC
Q 013948 323 ---FRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI----RIGGNINLNFG-ENM 394 (433)
Q Consensus 323 ---~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~~~~l~-~~~ 394 (433)
.+-+.|++.+ | ....-.|++..++. ..|..+|+..+|....+ +++|.. ..-+.....+| +..
T Consensus 265 VvFrngEgALqVL-----P-~L~~~IPEARlNL~-iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 265 VVFRNGEGALQVL-----P-SLMKHIPEARLNLI-IYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred EEEeCCccHHHhc-----h-HHHhhChHhhhhhe-eeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcC
Confidence 2223333333 3 11124558999999 99999999999988774 567776 22333333445 556
Q ss_pred cHHHHHHHHHHHhhcCCC
Q 013948 395 PEDITGALRSMMEMFSGP 412 (433)
Q Consensus 395 ~~~~~~a~~~~~~~~~~~ 412 (433)
..+-....+.+..+.+++
T Consensus 335 SreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGES 352 (557)
T ss_pred cHHHHHHHHHHHHHhccc
Confidence 666677777788777666
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.05 E-value=6.9e-10 Score=83.80 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+.+++++++..|.+ + ....++.+|.+++..|+|++|+..+++ +..+|.+...++.+|.|+.++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~-------~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN-------P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT-------H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCC-------h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 589999999999999999853 1 266788899999999999999999999 8889988899999999999999
Q ss_pred cHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKS 238 (433)
Q Consensus 227 ~~~~A~~~~~~a 238 (433)
++++|+..++++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 999999999875
No 131
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.05 E-value=9.3e-09 Score=103.52 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=108.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--cCCCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS--------QQYSDAIELYSFAIAL--CGNNAVYYS 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~ 216 (433)
.+++.+|+.+|+++++++|++ +.++-.++.++... .+...+.....+++.+ +|.++.++.
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~----------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ 424 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDF----------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYE 424 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHH
Confidence 467899999999999999988 77888777766543 2355677777776664 777889999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~ 283 (433)
.+|......|++++|...+++|+.++| +..+|..+|.++...|++++|+. .|++|+.++|.++..
T Consensus 425 ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~-~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 425 ILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAAD-AYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCCchH
Confidence 999999999999999999999999999 57899999999999999999999 999999999998753
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.04 E-value=3.8e-09 Score=93.97 Aligned_cols=171 Identities=23% Similarity=0.234 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 251 (433)
+..++..|..++..|+|.+|+..|++.+...|.+ ..+.+.+|.+++..|++++|+..+++.++..|++ +.+++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 7789999999999999999999999999998876 6889999999999999999999999999999986 478999
Q ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHHHHHHHhcccccccCCCccchhhh
Q 013948 252 LGLAYYAQG-----------NYNDAIEKGFKKALQLDPNNEA---VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESN 317 (433)
Q Consensus 252 lg~~~~~~g-----------~~~~A~~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 317 (433)
+|.+++.+. ...+|+. .|+..+...|+++- +...+..+...+...+- ..+.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~-~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~--------------~ia~ 149 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIE-EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL--------------YIAR 149 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHH-HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH--------------HHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHH-HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH--------------HHHH
Confidence 999987653 3458999 99999999999754 44444544444444331 1235
Q ss_pred hhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhH
Q 013948 318 QSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ 366 (433)
Q Consensus 318 ~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A 366 (433)
+|...|.|..|+.-+ ++..-|+ ++ ....++..++ ..+..+|..+.|
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~-t~-~~~~al~~l~-~~y~~l~~~~~a 197 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPD-TP-AAEEALARLA-EAYYKLGLKQAA 197 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTT-SH-HHHHHHHHHH-HHHHHTT-HHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-Cc-hHHHHHHHHH-HHHHHhCChHHH
Confidence 666677777777777 6666662 11 3445667777 778888887744
No 133
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.03 E-value=1.5e-08 Score=109.76 Aligned_cols=246 Identities=11% Similarity=-0.006 Sum_probs=187.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 224 (433)
..|++++|..+|++....... | ....|..+...|.+.|++++|++.|.+..... ..+...|..+...+.+
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv~--------P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGVE--------A-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCC--------C-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 368999999999988765321 1 16788888899999999999999999886643 2257788899999999
Q ss_pred hhcHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHH
Q 013948 225 IHQYAEAVRDCLKSIDI----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD-PNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
.|++++|.+.+...... .|+ ...|..+-.+|.+.|++++|.+ .|+...+.+ +.+...|..+...+.+.|+.++
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~e-lf~~M~e~gi~p~~~tynsLI~ay~k~G~~de 632 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKE-VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHH-HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Confidence 99999999999998763 444 5678888889999999999999 999998876 4577889999999999999999
Q ss_pred hcccccccCCC---ccc----hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 300 RTGWDQTTSSS---HYS----QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 300 a~~~~~~~~~~---~~~----~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
|...+..+... |.. .....|...|++++|.+.+ ...... ..+...|..+. ..|...|++++|...|
T Consensus 633 Al~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~----~pd~~tynsLI-~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI----KLGTVSYSSLM-GACSNAKNWKKALELY 707 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCHHHHHHHH-HHHHhCCCHHHHHHHH
Confidence 99987766532 221 1245678889999999988 333221 03456788888 8999999999999999
Q ss_pred hhhcC--CCCCcccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 371 NVSGS--DEPGIRIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 371 ~~al~--l~P~~~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
+...+ ..|+...+..++..++ ....++..+.+..|.+
T Consensus 708 ~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98754 5777655544444443 5666766666666653
No 134
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.02 E-value=2.5e-09 Score=113.17 Aligned_cols=215 Identities=8% Similarity=-0.075 Sum_probs=174.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|.+++...++..-.. ....+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~---------d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPL---------DIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHG 405 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCC---------CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcC
Confidence 789999999999998864211 156788899999999999999999998653 36788999999999999
Q ss_pred cHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHHhccc
Q 013948 227 QYAEAVRDCLKSIDIDP-NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--NNEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
+.++|++.|++..+... -+...+..+-.++...|..++|.. .|+...+..+ .+...+..+..++.+.|+.++|...
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~-~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE-IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999887542 245678888889999999999999 9999886433 2445788888999999999999998
Q ss_pred ccccCCCccchh----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC-
Q 013948 304 DQTTSSSHYSQE----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD- 376 (433)
Q Consensus 304 ~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l- 376 (433)
+......|.... ...+...|+++.|...+ .+..+| ++...|..++ ++|...|++++|.+.++...+.
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-----~~~~~y~~L~-~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-----EKLNNYVVLL-NLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-----CCCcchHHHH-HHHHhCCCHHHHHHHHHHHHHcC
Confidence 877654443322 34566779999998888 788999 8888899999 9999999999999999875543
Q ss_pred ---CCCc
Q 013948 377 ---EPGI 380 (433)
Q Consensus 377 ---~P~~ 380 (433)
.|..
T Consensus 559 ~~k~~g~ 565 (697)
T PLN03081 559 LSMHPAC 565 (697)
T ss_pred CccCCCe
Confidence 4655
No 135
>PRK11906 transcriptional regulator; Provisional
Probab=99.01 E-value=8.2e-09 Score=99.18 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=113.4
Q ss_pred chHHHHHHHHHHHH---HHHhhccccccchhhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 148 SQVDKASRIFHDAI---NEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---------QQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 148 g~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
...+.|..+|.+++ .++|.. +.+|..++.|++.. .+..+|.+...+|++++|.|+.++
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~ 341 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLK----------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKIL 341 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCccc----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 46778999999999 777765 88888888887643 346789999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
..+|.++...++++.|+..|++|+.++|+.+.+|+..|.++...|+.++|.. +++++++++|....+-
T Consensus 342 ~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~-~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 342 AIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI-CIDKSLQLEPRRRKAV 409 (458)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH-HHHHHhccCchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999 9999999999765543
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.97 E-value=1.8e-08 Score=81.03 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=86.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 223 (433)
.|++++|+..|.+++..+|.+ +....+++.+|.+++..|++++|+..|++++..+|++ +.+++.+|.++.
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKS-------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCc-------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 589999999999999988764 2236789999999999999999999999999998885 678999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAY 249 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~ 249 (433)
+.|++++|+..+++++...|++..+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999987654
No 137
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=1.5e-08 Score=101.44 Aligned_cols=218 Identities=11% Similarity=0.039 Sum_probs=163.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|++.+.+......+. ...+-.+|.++...|++++|...|...|+.+|++...+..+..+..-..
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk----------~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDK----------LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 699999999998877665544 7788889999999999999999999999999999999888888872222
Q ss_pred -----cHHHHHHHHHHHHhcCC----------------------------------------------------------
Q 013948 227 -----QYAEAVRDCLKSIDIDP---------------------------------------------------------- 243 (433)
Q Consensus 227 -----~~~~A~~~~~~al~~~p---------------------------------------------------------- 243 (433)
+.+.-...|+......|
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 23333444443322222
Q ss_pred -----------------------Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 244 -----------------------NY--SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 244 -----------------------~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
.. .++++.+|+.|...|++++|+. +.+++|+..|..++.+...|+++...|+..
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~-~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE-YIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 01 3567889999999999999999 999999999999999999999999999999
Q ss_pred HhcccccccCCCccchh------hhhhhcCCCCCCCCCcc-cccC---CCCCCCccHHHHHH--HHhhcccccCCChhhH
Q 013948 299 QRTGWDQTTSSSHYSQE------SNQSTGGFRSHGTPPSF-TMPF---NTNALPTDIASMLM--NMASNMPQAQPSQSRQ 366 (433)
Q Consensus 299 ~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~A~~~~-al~~---~p~~~~~~~~~a~~--~la~~~~~~~g~~~~A 366 (433)
+|..+...+........ ...+++.|+.++|...+ .... +|...-.+.--+|+ ..| .+|...|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a-~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA-EAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH-HHHHHHhhHHHH
Confidence 99998877763322211 45678889999999888 3322 23111111222443 345 788899999999
Q ss_pred HHHHhhhcCC
Q 013948 367 GEDSNVSGSD 376 (433)
Q Consensus 367 ~~~~~~al~l 376 (433)
+.-|..+.+.
T Consensus 325 Lk~~~~v~k~ 334 (517)
T PF12569_consen 325 LKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHH
Confidence 9888776544
No 138
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.93 E-value=1.9e-09 Score=93.28 Aligned_cols=93 Identities=23% Similarity=0.399 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 209 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
+....+++++|.++...|++++|+.+|+++++..|+. ..+++.+|.++...|++++|+. ++++++...|.+...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALE-YYHQALELNPKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcccHHHHH
Confidence 3457789999999999999999999999999987764 5789999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 013948 286 NIRMAEQKLREERQRTG 302 (433)
Q Consensus 286 ~l~~~~~~~~~~~~a~~ 302 (433)
.+|.++..+|+...+..
T Consensus 111 ~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHHcCChHhHhh
Confidence 99999998887655443
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.92 E-value=1.5e-08 Score=76.99 Aligned_cols=93 Identities=31% Similarity=0.502 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
+++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|+. ++++++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALE-DYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCcchhHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHhccccccc
Q 013948 294 LREERQRTGWDQTT 307 (433)
Q Consensus 294 ~~~~~~a~~~~~~~ 307 (433)
.|+++.+......+
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 99999988776543
No 140
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=2.9e-08 Score=99.41 Aligned_cols=203 Identities=11% Similarity=0.056 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
.+.+.....++...|++++|++++.+....-.+...+.-.+|.++.++|++++|...|...|..+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 56777788899999999999999999988888889999999999999999999999999999999999999999988883
Q ss_pred HcC-----CHHHHHHHHHHHHHhhCCCC--------------------------------HHHHHHHHHHHHHHHHHHH-
Q 013948 258 AQG-----NYNDAIEKGFKKALQLDPNN--------------------------------EAVKENIRMAEQKLREERQ- 299 (433)
Q Consensus 258 ~~g-----~~~~A~~~~~~~al~~~p~~--------------------------------~~~~~~l~~~~~~~~~~~~- 299 (433)
... +.+.-.. .|.+.....|.. |.+..++...|..-.+..-
T Consensus 84 ~~~~~~~~~~~~~~~-~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLE-LYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhcccccccHHHHHH-HHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 333 3444455 555555444432 2333333333321111000
Q ss_pred ---hccccccc-------------CCCccch-h-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhc
Q 013948 300 ---RTGWDQTT-------------SSSHYSQ-E-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASN 355 (433)
Q Consensus 300 ---a~~~~~~~-------------~~~~~~~-~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~ 355 (433)
...+.... ...|... + +..|...|++++|++.+ +|...| ..++.|+..| +
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-----t~~ely~~Ka-r 236 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-----TLVELYMTKA-R 236 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CcHHHHHHHH-H
Confidence 00000000 0111111 1 23455669999999999 999999 9999999999 9
Q ss_pred ccccCCChhhHHHHHhhhcCCCCCcccccccc
Q 013948 356 MPQAQPSQSRQGEDSNVSGSDEPGIRIGGNIN 387 (433)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~ 387 (433)
++...|++.+|.+++..|-++|+.|..+.+-.
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~ 268 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLADRYINSKC 268 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 99999999999999999999999995554433
No 141
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.88 E-value=8e-09 Score=74.46 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=40.0
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
+..|++++|+..|++++..+|++..+++.+|.|+.+.|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 345666666666666666666666666666666666666666666666666666666555555543
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.87 E-value=8.6e-08 Score=80.44 Aligned_cols=124 Identities=16% Similarity=0.069 Sum_probs=105.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRLGL 254 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~ 254 (433)
.+.........++...+...+++.+..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. +.+.+++|.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3333344446889999999999999999998 5778889999999999999999999999988765 568899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++...|++++|+. .++. +.-.+-.+.++..+|.++...|++++|...++.
T Consensus 94 ~~~~~~~~d~Al~-~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALA-TLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHH-HHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999 8866 344455677888899999999999999888764
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.86 E-value=8.7e-08 Score=92.56 Aligned_cols=113 Identities=13% Similarity=0.201 Sum_probs=90.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.+.++.|++++++..+.+|. +...++.++...++..+|+..+.+++..+|.+..++...+..+...+
T Consensus 182 t~~~~~ai~lle~L~~~~pe-------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE-------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc-------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 46788888888887776553 34557777777788888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
+++.|+...++++.+.|+....|+.|+.+|..+|+|+.|+. .++.+
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl-aLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL-ALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH-HHhcC
Confidence 88888888888888888888888888888888888888887 66643
No 144
>PLN03077 Protein ECB2; Provisional
Probab=98.85 E-value=1e-07 Score=103.51 Aligned_cols=213 Identities=8% Similarity=-0.024 Sum_probs=151.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+++.+.+++..+++..-.. ....+..+-..|.+.|++++|...|... +.+...|..+...|.+.|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~---------~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGF---------DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHG 568 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCc---------cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcC
Confidence 577788888777777653221 1334455667778888888888888775 457778888888888888
Q ss_pred cHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 227 QYAEAVRDCLKSIDI--DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--NNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 227 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
+.++|+..|++..+. .|+. ..+..+-..+.+.|.+++|.. +|+...+..+ .+...+..+..++.+.|+.++|..
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~-~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLE-YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHH-HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888887764 3443 345555566788888888888 8888774332 245677778888888888888888
Q ss_pred cccccCCCccchh----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh---
Q 013948 303 WDQTTSSSHYSQE----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS--- 373 (433)
Q Consensus 303 ~~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a--- 373 (433)
.++.....|.... ...+...++.+.+.... .++++| +++..|..++ ++|...|++++|....+..
T Consensus 647 ~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p-----~~~~~y~ll~-n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 647 FINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP-----NSVGYYILLC-NLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----CCcchHHHHH-HHHHHCCChHHHHHHHHHHHHc
Confidence 8777643333221 12334446665555444 788999 9999999999 9999999999999887664
Q ss_pred -cCCCCCc
Q 013948 374 -GSDEPGI 380 (433)
Q Consensus 374 -l~l~P~~ 380 (433)
+..+|..
T Consensus 721 g~~k~~g~ 728 (857)
T PLN03077 721 GLTVDPGC 728 (857)
T ss_pred CCCCCCCc
Confidence 5567776
No 145
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.85 E-value=7.6e-08 Score=77.08 Aligned_cols=96 Identities=21% Similarity=0.159 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYSRL 252 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 252 (433)
.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999976544 578999999999999999999999999999898 88889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~ 275 (433)
+.++...|++++|+. ++-.++.
T Consensus 82 Al~L~~~gr~~eAl~-~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALE-WLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHH-HHHHHHH
Confidence 999999999999999 9888775
No 146
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=5.7e-08 Score=88.24 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHH
Q 013948 193 QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG---NYNDAIEKG 269 (433)
Q Consensus 193 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~ 269 (433)
..+.-+.-++.-+..+|+|+.-|..||.+|+.+|++..|...|.+|+++.|+++..+..+|.+++.+. ...++.. .
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~-l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA-L 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH-H
Confidence 46777788888999999999999999999999999999999999999999999999999999987654 3667888 9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 270 FKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
|+++++++|.+..+...|+..+...|++.+|....+...
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999988766543
No 147
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.3e-08 Score=90.21 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=111.6
Q ss_pred CcchHHHHHHHHHHHHHHHhhcccccc-----chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAY-----NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
..|+|..|...|++++........... .......++.+++.|+.+.++|.+|+....++|.++|++..++|.+|.
T Consensus 220 K~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~ 299 (397)
T KOG0543|consen 220 KEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQ 299 (397)
T ss_pred hhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 379999999999999987653311110 112234578899999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
++..+|+|+.|+..|++++++.|+|..+...+..+..+...+.+...+.|.+.+..-+
T Consensus 300 A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 300 ALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999988888777764437888776544
No 148
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.84 E-value=1e-07 Score=85.65 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRL 252 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 252 (433)
.-.|..|.-++..|+|..|...|..-++..|++ +.++|+||.+++.+|+|+.|...|..+++-.|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 338888999999999999999999999999987 6899999999999999999999999999998875 6889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
|.+...+|+.++|+. .|+++++..|+...+...-.
T Consensus 222 g~~~~~l~~~d~A~a-tl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 222 GVSLGRLGNTDEACA-TLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHHHhcCHHHHHH-HHHHHHHHCCCCHHHHHHHH
Confidence 999999999999999 99999999999887765443
No 149
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.84 E-value=2e-08 Score=73.42 Aligned_cols=67 Identities=22% Similarity=0.391 Sum_probs=39.1
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 186 NRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
.++...++|++|++++++++.++|+++..|+.+|.++..+|++.+|+..++++++..|+++.+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4455555666666666666666666666666666666666666666666666666666555544433
No 150
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.84 E-value=2e-07 Score=87.36 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=135.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CC----HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--NN----AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~ 220 (433)
.++|++|.+.|.++.+..-... .....+..+...+.++... ++++|+.+|++|+.+.- ++ +.++..+|.
T Consensus 48 ~~~~~~A~~ay~kAa~~~~~~~----~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 48 AKDWEKAAEAYEKAADCYEKLG----DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAE 122 (282)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HhccchhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7899999999999998876542 1233456666666666555 99999999999998732 22 568999999
Q ss_pred HHHHh-hcHHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC----CH---HHHHH
Q 013948 221 AYTQI-HQYAEAVRDCLKSIDIDP--N----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN----NE---AVKEN 286 (433)
Q Consensus 221 ~~~~~-~~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~----~~---~~~~~ 286 (433)
+|... |++++|+++|++|+.+.. + -..++..+|.++..+|+|++|+. .|+++....-+ .. ..+..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~-~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE-IYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH-HHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHhhcccccchhHHHHHHH
Confidence 99999 999999999999998832 1 24677889999999999999999 99999875322 12 34556
Q ss_pred HHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc--cCCChh
Q 013948 287 IRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ--AQPSQS 364 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~--~~g~~~ 364 (433)
.+.|+...|+...|...+... ...+|+-...........+- .++. ....+.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~--------------------------~~~~~~F~~s~E~~~~~~l~-~A~~~~D~e~f~ 254 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERY--------------------------CSQDPSFASSREYKFLEDLL-EAYEEGDVEAFT 254 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH--------------------------GTTSTTSTTSHHHHHHHHHH-HHHHTT-CCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH--------------------------HhhCCCCCCcHHHHHHHHHH-HHHHhCCHHHHH
Confidence 777888888888877765532 22334332334444555554 4433 345678
Q ss_pred hHHHHHhhhcCCCC
Q 013948 365 RQGEDSNVSGSDEP 378 (433)
Q Consensus 365 ~A~~~~~~al~l~P 378 (433)
+|+..|.+.-.+||
T Consensus 255 ~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 255 EAVAEYDSISRLDN 268 (282)
T ss_dssp HHCHHHTTSS---H
T ss_pred HHHHHHcccCccHH
Confidence 88888877766654
No 151
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.84 E-value=2.3e-07 Score=86.62 Aligned_cols=224 Identities=9% Similarity=0.063 Sum_probs=162.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-AVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 225 (433)
.|+|.+|+....+.-+..+.. .-.+..-+......|+++.|=.++.++-+.-+++ ......++.++...
T Consensus 97 eG~~~qAEkl~~rnae~~e~p----------~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP----------VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch----------HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 599999999998866654432 4556666777889999999999999999984444 56677889999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC----------------------------
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD---------------------------- 277 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~---------------------------- 277 (433)
|++..|.....+++++.|.++.+....-.+|...|+|.+... .+.+.-+-.
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~-~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA-ILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH-HHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999998887 544433221
Q ss_pred --------------CCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhh---hhcCCCCCCCCCcc--cccCCC
Q 013948 278 --------------PNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQ---STGGFRSHGTPPSF--TMPFNT 338 (433)
Q Consensus 278 --------------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~--al~~~p 338 (433)
.+++.....++.-+..+|.+++|........+...+...-. ....+++..-+... .+...|
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 11233444444445555666666655444433222222111 12224444444434 677778
Q ss_pred CCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcccccccc
Q 013948 339 NALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNIN 387 (433)
Q Consensus 339 ~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~ 387 (433)
+++..+..+| .++...+.+.+|...++.|++..|+......+.
T Consensus 326 -----~~p~L~~tLG-~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la 368 (400)
T COG3071 326 -----EDPLLLSTLG-RLALKNKLWGKASEALEAALKLRPSASDYAELA 368 (400)
T ss_pred -----CChhHHHHHH-HHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHH
Confidence 8899999999 999999999999999999999999984443333
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.83 E-value=1.5e-07 Score=86.60 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=87.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 223 (433)
.|+|++|+..|++.+..+|++ +..+.+++.+|.+++..|++++|+..|.+++...|++ +.+++.+|.++.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s-------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDS-------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 489999999999999999986 3336799999999999999999999999999998875 789999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAY 249 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~ 249 (433)
.+|++++|...|+++++..|+...+.
T Consensus 229 ~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 99999999999999999999987543
No 153
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.81 E-value=1.8e-08 Score=72.55 Aligned_cols=67 Identities=25% Similarity=0.398 Sum_probs=61.7
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
++..|++++|+..|++++..+|++..+++.+|.++...|++++|.. .+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~-~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEE-LLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHH-HHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999 999999999999888777664
No 154
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.5e-07 Score=90.30 Aligned_cols=190 Identities=14% Similarity=0.178 Sum_probs=132.1
Q ss_pred CCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccC
Q 013948 33 VDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEE 112 (433)
Q Consensus 33 ~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (433)
.+.+.|++|+..-.+.+.+.|++++++.+.-....-...++.+.... ..+ +.+ ..
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~i--kk~-----------~~~-----~~------- 77 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLI--KKN-----------GAL-----LV------- 77 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHH--Hhc-----------chh-----hh-------
Confidence 47789999999999999999999988776665555566666665311 000 000 00
Q ss_pred CCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc
Q 013948 113 PDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ 192 (433)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~ 192 (433)
...+ .+..++- .| .++..++|+..++ .++ +.+ .......|+++++.|
T Consensus 78 --------~~~~-~fEKAYc---~Y--------rlnk~Dealk~~~-~~~--~~~----------~~ll~L~AQvlYrl~ 124 (652)
T KOG2376|consen 78 --------INSF-FFEKAYC---EY--------RLNKLDEALKTLK-GLD--RLD----------DKLLELRAQVLYRLE 124 (652)
T ss_pred --------cchh-hHHHHHH---HH--------HcccHHHHHHHHh-ccc--ccc----------hHHHHHHHHHHHHHh
Confidence 0000 0111111 11 2578888888877 222 221 346777889999999
Q ss_pred CHHHHHHHHHHHHHhcCC-------------------------------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 193 QYSDAIELYSFAIALCGN-------------------------------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 193 ~~~~A~~~~~~al~~~p~-------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+|++|++.|+..++.+.+ +.+.+||.|.++...|+|.+|++.+++++++
T Consensus 125 ~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 125 RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999888644322 3457999999999999999999999999544
Q ss_pred C-------CC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 242 D-------PN--------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 242 ~-------p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
- .. -..+...|+.++..+|+.++|.. .|...++.+|.|.
T Consensus 205 ~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~-iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 205 CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS-IYVDIIKRNPADE 258 (652)
T ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHhcCCCc
Confidence 1 11 13467779999999999999999 9999999887764
No 155
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.79 E-value=3.4e-08 Score=72.25 Aligned_cols=71 Identities=23% Similarity=0.468 Sum_probs=65.6
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
|..+|...++|++|+.++++++.++|+++..|+.+|.++..+|++.+|.. .|+++++..|+++.+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~-~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALE-DLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHH-HHHHHHHHCCCcHHHHHHHHh
Confidence 35689999999999999999999999999999999999999999999999 999999999999887665543
No 156
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.79 E-value=2.3e-07 Score=75.56 Aligned_cols=106 Identities=23% Similarity=0.284 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 251 (433)
+..++..|...+..|+|.+|++.|+......|.. ..+...+|.+|++.+++++|+..+++.++++|.+ +.+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 6789999999999999999999999999988865 6789999999999999999999999999999987 478999
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHHhhCCCCHHHH
Q 013948 252 LGLAYYAQGN---------------YNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 252 lg~~~~~~g~---------------~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
.|.+++.+.. ..+|.. .|++.++..|++.-+-
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~-~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFR-DFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHH-HHHHHHHHCcCChhHH
Confidence 9999999887 889999 9999999999986543
No 157
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.78 E-value=9.3e-09 Score=93.83 Aligned_cols=213 Identities=12% Similarity=0.040 Sum_probs=155.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 143 GNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 143 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.+..+|.|++|+.+|.+++..+|.+ +-.+.+.+..|++.+.|..|...+..|+.++.....+|..+|.+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~N----------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHN----------PVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCC----------ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334899999999999999999987 778889999999999999999999999999988899999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHH---------HHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI---------RMAEQK 293 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l---------~~~~~~ 293 (433)
..+|...+|.+.|+.+|++.|++.+..-.++.+-. ..++.- +.+-.|...++..+. |.....
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I-----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk 246 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI-----ATKSTPGFTPARQGMIQILPIKKPGYKFSK 246 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH-----HhhcCCCCCccccchhhhccccCcchhhhh
Confidence 99999999999999999999997765554444332 222221 222233333332222 444556
Q ss_pred HHHHHHhcccccccCCCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhH
Q 013948 294 LREERQRTGWDQTTSSSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ 366 (433)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A 366 (433)
.|.+..++.++-.......... ...|..-.++++++... ++..+| ....++-..+ .+---.|...++
T Consensus 247 ~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~-----s~~~~~s~~~-~A~T~~~~~~E~ 320 (536)
T KOG4648|consen 247 KAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKP-----TPMPDTSGPP-KAETIAKTSKEV 320 (536)
T ss_pred hhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCC-----CcCcccCCCc-hhHHHHhhhhhc
Confidence 6777777776554332111111 34466667888888777 777777 4444455555 555566788899
Q ss_pred HHHHhhhcCCCCCc
Q 013948 367 GEDSNVSGSDEPGI 380 (433)
Q Consensus 367 ~~~~~~al~l~P~~ 380 (433)
...++.++.+.|.+
T Consensus 321 K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 321 KPTKQTAVKVAPAV 334 (536)
T ss_pred Ccchhheeeecccc
Confidence 99999999999998
No 158
>PRK15331 chaperone protein SicA; Provisional
Probab=98.77 E-value=1.8e-07 Score=77.87 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=84.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|..+|+-....+|.+ .+.|+.||-|+...++|++|+..|..+..++++++...+..|.|++.+|
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYN----------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 599999999999999998887 8889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSK 247 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~ 247 (433)
+.+.|..+|..++. .|.+..
T Consensus 120 ~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 120 KAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred CHHHHHHHHHHHHh-CcchHH
Confidence 99999999999999 465443
No 159
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.6e-08 Score=86.65 Aligned_cols=98 Identities=35% Similarity=0.555 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.-+...|+.++...+|..|+.+|.++|.++|..+.+|.+++.|++++.+|+.+...+.+++.++|+...+++.+|.+..
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 55677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhh
Q 013948 258 AQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~ 276 (433)
....|++|+. .++++..+
T Consensus 90 ~s~~~~eaI~-~Lqra~sl 107 (284)
T KOG4642|consen 90 QSKGYDEAIK-VLQRAYSL 107 (284)
T ss_pred hhccccHHHH-HHHHHHHH
Confidence 9999999999 99999655
No 160
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.9e-07 Score=85.22 Aligned_cols=152 Identities=26% Similarity=0.443 Sum_probs=121.7
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCH
Q 013948 115 STGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQY 194 (433)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 194 (433)
..|...+ .....+.+.|+|.+..+...+.+.--.+++ +|..++..+ .+...+.-+..-|+-|++.++|
T Consensus 30 ~k~~~~D----ew~kEm~k~PfFMt~~p~~gd~~~~~~~Lq----slK~da~E~----ep~E~Aen~KeeGN~~fK~Kry 97 (390)
T KOG0551|consen 30 RKGFHED----EWEKEMNKVPFFMTRAPSEGDPNPDNVCLQ----SLKADAEEG----EPHEQAENYKEEGNEYFKEKRY 97 (390)
T ss_pred cCCCCHH----HHHHHHhcCcHHHhcCCCCCCCCccHHHHH----HhhhccccC----ChHHHHHHHHHHhHHHHHhhhH
Confidence 4455544 466778899999988887665544444433 333343221 1223578888999999999999
Q ss_pred HHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013948 195 SDAIELYSFAIALCGNN----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270 (433)
Q Consensus 195 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 270 (433)
..|+..|.++|+....+ +.+|.|+|.|...+|+|-.|+..+.+++.++|.+..++++-+.|++.+.++.+|.. |.
T Consensus 98 k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~n-w~ 176 (390)
T KOG0551|consen 98 KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVN-WC 176 (390)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHH-HH
Confidence 99999999999986655 57899999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHhhCCC
Q 013948 271 KKALQLDPN 279 (433)
Q Consensus 271 ~~al~~~p~ 279 (433)
+..+.++..
T Consensus 177 ee~~~~d~e 185 (390)
T KOG0551|consen 177 EEGLQIDDE 185 (390)
T ss_pred hhhhhhhHH
Confidence 887766543
No 161
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=3.7e-07 Score=99.88 Aligned_cols=228 Identities=11% Similarity=0.008 Sum_probs=161.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--------CHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN--------NAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l 218 (433)
.|++++|...+++++......+. ......++..+|.+++..|++++|...+.+++..... ...++..+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDV----YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcc----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 58999999999999987654321 1223557788999999999999999999999886321 23456678
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---HHHHHH----
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPN-----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKEN---- 286 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~---~~~~~~---- 286 (433)
|.++...|++++|...+.+++.+... ...++..+|.++...|++++|.. .+.++..+.+.. ......
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~-~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR-YLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHhcccccHhHhhHHHHH
Confidence 99999999999999999999886332 35567778999999999999999 999998764322 111111
Q ss_pred HHHHHHHHHHHHHhcccccccCCCc--c--------chhhhhhhcCCCCCCCCCcc--cccCCC-CCCCccHHHHHHHHh
Q 013948 287 IRMAEQKLREERQRTGWDQTTSSSH--Y--------SQESNQSTGGFRSHGTPPSF--TMPFNT-NALPTDIASMLMNMA 353 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~A~~~~--al~~~p-~~~~~~~~~a~~~la 353 (433)
....+...|+.+.+..+........ . ...+..+...|++++|+..+ ++.... ...+.+...++..+|
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 1122233456666666543322111 0 11244567779999999888 444321 011225667888899
Q ss_pred hcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 354 SNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.++...|+.++|...+.+|+++....
T Consensus 739 -~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 739 -QLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred -HHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999987665
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.75 E-value=3.6e-08 Score=92.41 Aligned_cols=201 Identities=17% Similarity=0.148 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-----CC-c
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--NN----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-----PN-Y 245 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~-~ 245 (433)
+..+..-|.+|...++|++|.++|.++....- ++ ...+...+.++.+. ++++|+.+|++++.+. |. -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 33444456777778899999999998876532 12 45677777777666 9999999999999873 11 2
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhh
Q 013948 246 SKAYSRLGLAYYAQ-GNYNDAIEKGFKKALQLDPN--N----EAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQ 318 (433)
Q Consensus 246 ~~~~~~lg~~~~~~-g~~~~A~~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 318 (433)
..++..+|.+|... |++++|++ +|++|+.+... . ...+..++.++..+|++++|...+.........
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~-~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~----- 187 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIE-YYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE----- 187 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHH-HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc-----
Confidence 57889999999998 99999999 99999987321 2 346778899999999999999987754321100
Q ss_pred hhcCCCCCCCCCccccc-CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc--cccccccccc----c
Q 013948 319 STGGFRSHGTPPSFTMP-FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI--RIGGNINLNF----G 391 (433)
Q Consensus 319 ~~~~~~~~~A~~~~al~-~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~~~~l----~ 391 (433)
.. ... .....++..+ .++...|+...|...+++....+|.+ +.-..++-.+ .
T Consensus 188 ---------------~~l~~~-----~~~~~~l~a~-l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 188 ---------------NNLLKY-----SAKEYFLKAI-LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp ---------------HCTTGH-----HHHHHHHHHH-HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred ---------------ccccch-----hHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 00 112 3334566667 78999999999999999999999998 3334444333 1
Q ss_pred cCCcHHHHHHHHHHH
Q 013948 392 ENMPEDITGALRSMM 406 (433)
Q Consensus 392 ~~~~~~~~~a~~~~~ 406 (433)
..+.+.+..++..+.
T Consensus 247 ~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYD 261 (282)
T ss_dssp TT-CCCHHHHCHHHT
T ss_pred hCCHHHHHHHHHHHc
Confidence 567776666666554
No 163
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2e-07 Score=79.13 Aligned_cols=106 Identities=20% Similarity=0.299 Sum_probs=91.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 013948 140 MPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRA 219 (433)
Q Consensus 140 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 219 (433)
.+......|+|++|..-|+.||.+.|... .....-.|.+.|.++++.+.++.|+..+.++|+++|....++..+|
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 33334457999999999999999988762 2334556778999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 250 (433)
.+|.++..|++|+..|.++++.+|....+.-
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 9999999999999999999999998765443
No 164
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.73 E-value=7e-06 Score=76.94 Aligned_cols=75 Identities=9% Similarity=-0.018 Sum_probs=52.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHH
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASM 348 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a 348 (433)
..++.++..|+++..+..||..+.+.+.|.+|..+.+. +++..| ..+.
T Consensus 316 ~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea--------------------------Al~~~~------s~~~ 363 (400)
T COG3071 316 AAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEA--------------------------ALKLRP------SASD 363 (400)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHH--------------------------HHhcCC------Chhh
Confidence 44455555566666677777777777777766666552 455555 3456
Q ss_pred HHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 349 LMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 349 ~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
+..+| .++..+|+..+|...++.++-+
T Consensus 364 ~~~la-~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 364 YAELA-DALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHH-HHHHHcCChHHHHHHHHHHHHH
Confidence 77788 9999999999999999998743
No 165
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.72 E-value=4.3e-07 Score=74.01 Aligned_cols=110 Identities=20% Similarity=0.189 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHH
Q 013948 118 VSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDA 197 (433)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 197 (433)
.+...++....+++.. |+|++|++.|+.+....|.. +....+...+|.+++..+++++|
T Consensus 8 ~~~~~ly~~a~~~l~~--------------~~Y~~A~~~le~L~~ryP~g-------~ya~qAqL~l~yayy~~~~y~~A 66 (142)
T PF13512_consen 8 KSPQELYQEAQEALQK--------------GNYEEAIKQLEALDTRYPFG-------EYAEQAQLDLAYAYYKQGDYEEA 66 (142)
T ss_pred CCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHhcCCCC-------cccHHHHHHHHHHHHHccCHHHH
Confidence 4567788888888877 99999999999999998875 44478899999999999999999
Q ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHHHHhhc---------------HHHHHHHHHHHHhcCCCcHHH
Q 013948 198 IELYSFAIALCGNNA---VYYSNRAAAYTQIHQ---------------YAEAVRDCLKSIDIDPNYSKA 248 (433)
Q Consensus 198 ~~~~~~al~~~p~~~---~~~~~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 248 (433)
+..+++-|+++|.++ .+++.+|.+++.+.. ..+|+..|+++++..|++..+
T Consensus 67 ~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 67 IAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999999999884 689999999999877 889999999999999998654
No 166
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.72 E-value=3.9e-07 Score=76.60 Aligned_cols=98 Identities=29% Similarity=0.352 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ----------YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN-- 261 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-- 261 (433)
|+.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|+.||.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999999988755 4678888999999999999999999999988764
Q ss_pred ---------HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 262 ---------YNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 262 ---------~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
|++|.. +|++|...+|++...+..|..+..
T Consensus 87 ~d~~~A~~~F~kA~~-~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATE-YFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHH-HHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHH-HHHHHHhcCCCcHHHHHHHHHHHh
Confidence 889999 999999999999998888877643
No 167
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=4.7e-07 Score=81.47 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=129.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..+|..|+.++..-.+..|.+ ...+..+|.||+...+|..|.++|++.-.+.|......+..+..+++.+
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~----------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRS----------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 368889999988888887766 6788899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHh----------c--------------------CC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSID----------I--------------------DP--NYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 227 ~~~~A~~~~~~al~----------~--------------------~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
.+..|+........ + -| +.+....+.|.+.++.|+|++|++ -|+.++
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq-kFqaAl 171 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ-KFQAAL 171 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH-HHHHHH
Confidence 99998877653322 1 13 456778889999999999999999 999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 275 QLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 275 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
+...-++-+-++++.++...+++..|..+..
T Consensus 172 qvsGyqpllAYniALaHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALAHYSSRQYASALKHIS 202 (459)
T ss_pred hhcCCCchhHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999999988754
No 168
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.68 E-value=9.6e-08 Score=91.82 Aligned_cols=70 Identities=17% Similarity=0.083 Sum_probs=64.0
Q ss_pred chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY---YSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 173 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
..|+.+.+|+++|..++..|+|++|+..|+++|+++|++..+ |+++|.+|..+|++++|+.++++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467789999999999999999999999999999999999854 9999999999999999999999999983
No 169
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=4.4e-07 Score=87.75 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=108.1
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 013948 186 NRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 265 (433)
..+...++++.|+..|++..+.+|+ +...++.++...++..+|+..+.+++..+|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 4455678999999999999888874 5666899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 266 IEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 266 ~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
+. ..++++.+.|.+...|..|+.+|..+|+++.|......+.
T Consensus 254 L~-iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LE-IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HH-HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99 9999999999999999999999999999999987655433
No 170
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.67 E-value=1.7e-06 Score=68.45 Aligned_cols=103 Identities=25% Similarity=0.342 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc----HHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY----SKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg 253 (433)
...+-..|..+...|+.+.|++.|.+++.+.|..+.+|++++.++.-+|+.++|+..+++++++.... -.++...|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 44566678888899999999999999999999999999999999999999999999999999996543 35788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
.+|..+|+-+.|.. .|+.+-++.....
T Consensus 123 ~lyRl~g~dd~AR~-DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 123 LLYRLLGNDDAARA-DFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHhCchHHHHH-hHHHHHHhCCHHH
Confidence 99999999999999 9999988765443
No 171
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.61 E-value=9e-07 Score=79.60 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQ 224 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~ 224 (433)
|+|..|...|+..++.+|++ ...+.++|.||.+++.+|+|+.|...|..+++-.|++ ++.++.+|.|...
T Consensus 155 gdy~~A~~~F~~fi~~YP~s-------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNS-------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCC-------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 89999999999999999986 4458899999999999999999999999999998876 6899999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHH
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSR 251 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~ 251 (433)
+|+.++|-..|+++++..|..+.+...
T Consensus 228 l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred hcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999998776543
No 172
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.60 E-value=1.7e-07 Score=69.51 Aligned_cols=66 Identities=21% Similarity=0.354 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-------GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
..+.++..+|.++...|+|++|+.+|++++.+. |..+.+++++|.++..+|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346677777777777777777777777777551 112456777777777777777777777777664
No 173
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.58 E-value=1.2e-07 Score=90.73 Aligned_cols=118 Identities=35% Similarity=0.571 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+...-..+...+..+.|+.|+..|.+||+++|+++.++-+++.++.+.+++..|+..+.+|++++|....+|++.|.++.
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 33455567788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.++++.+|.. .|++...+.|+++.+...+..|.....+
T Consensus 84 ~l~~~~~A~~-~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 84 ALGEFKKALL-DLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred hHHHHHHHHH-HHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999998888655443
No 174
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.58 E-value=2.6e-07 Score=86.41 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=115.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+.+. .+ .+.....-.++...++++.|.+.++.+-+.+.+..-+....|++....|
T Consensus 115 ~~~~~~AL~~l~~~-----~~----------lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GS----------LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp CCHHHHHHCCCTTT-----TC----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHcc-----Cc----------ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 58899888877664 11 5666777789999999999999999998888776666666677777777
Q ss_pred --cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH-HHhccc
Q 013948 227 --QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE-RQRTGW 303 (433)
Q Consensus 227 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~a~~~ 303 (433)
.+.+|...|+......+..+..+..++.++..+|+|++|.. .+++++..+|+++.++.++..+...+|+. +...++
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~-~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEE-LLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHH-HHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 59999999999888888999999999999999999999999 99999999999999999999999999987 333334
Q ss_pred c
Q 013948 304 D 304 (433)
Q Consensus 304 ~ 304 (433)
.
T Consensus 259 l 259 (290)
T PF04733_consen 259 L 259 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 175
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.58 E-value=4.6e-06 Score=73.95 Aligned_cols=190 Identities=23% Similarity=0.285 Sum_probs=154.0
Q ss_pred cchHHHHHHHHHHHHH--HHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHH
Q 013948 147 PSQVDKASRIFHDAIN--EMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA-AYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~ 223 (433)
.+++..+...+...+. ..+.. ...+...+......+++..++..+.+++...+.........+. ++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNL----------AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccch----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 4778888888888876 33333 7788889999999999999999999999988877666666666 899
Q ss_pred HhhcHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDP---NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-NEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~ 299 (433)
..|+++.|+..+.+++..+| .....+...+..+...++++.++. .+.+++...+. ....+..++.++...+....
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE-LLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH-HHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 99999999999999988877 466777777888889999999999 99999999999 68888899988888886666
Q ss_pred hcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 300 RTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 300 a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
+...... ++...| .....+..++ ..+...+..+++...+.+++..+|.
T Consensus 221 a~~~~~~--------------------------~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 221 ALEYYEK--------------------------ALELDP-----DNAEALYNLA-LLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHH--------------------------HHhhCc-----ccHHHHhhHH-HHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6555442 455566 5556677777 5555778899999999999999887
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.58 E-value=5.2e-07 Score=72.27 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC---CHHHHHH
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN---NEAVKEN 286 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~---~~~~~~~ 286 (433)
.++|++|.++-.+|+.++|+..|++++...... ..+++.+|.++..+|++++|+. .+++++...|+ +..+...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~-~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALA-LLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCCccccHHHHHH
Confidence 578999999999999999999999999986544 6799999999999999999999 99999999888 7888889
Q ss_pred HHHHHHHHHHHHHhcccccc
Q 013948 287 IRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~ 306 (433)
++.++...|+.++|..+...
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999888653
No 177
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.57 E-value=2.8e-07 Score=88.64 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=67.1
Q ss_pred hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 013948 207 LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKA---YSRLGLAYYAQGNYNDAIEKGFKKALQLD 277 (433)
Q Consensus 207 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~~al~~~ 277 (433)
.+|+++..|+++|.+|..+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+. ++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla-~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAAD-CLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhc
Confidence 589999999999999999999999999999999999999855 9999999999999999999 999999973
No 178
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=9.3e-06 Score=77.59 Aligned_cols=248 Identities=11% Similarity=0.114 Sum_probs=171.8
Q ss_pred HHHHHHHHHHhhhhCCCCCCCchhHHHHHH-----HHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCC
Q 013948 14 RRIVRSFLHFLDSVEPAPGVDLEGLEVARE-----CLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSS 88 (433)
Q Consensus 14 ~~~~~~~~~~l~~~~~~~~~~~~~~e~A~~-----~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (433)
+-|+..++.|=++.- +.+.+|++|. -|++-+.-+|-|.|++..+-.|.+....-+...+--
T Consensus 280 eeL~k~~~~fEKqfG-----d~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~y--------- 345 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFG-----DKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETY--------- 345 (677)
T ss_pred HHHHHHHHHHHHHhc-----chhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHH---------
Confidence 448888888887763 4455666654 488888999999988776666665553333222200
Q ss_pred CcccCCCccchhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhcc
Q 013948 89 SSAQNMDAKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSG 168 (433)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 168 (433)
.-+...+.+ ..+..+| .++.-....+..|.. ....|.+.+.+.|+.+|++.|..
T Consensus 346 ----------ErAIanvpp-~~ekr~W---------~RYIYLWinYalyeE-----le~ed~ertr~vyq~~l~lIPHk- 399 (677)
T KOG1915|consen 346 ----------ERAIANVPP-ASEKRYW---------RRYIYLWINYALYEE-----LEAEDVERTRQVYQACLDLIPHK- 399 (677)
T ss_pred ----------HHHHccCCc-hhHHHHH---------HHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHhhcCcc-
Confidence 000000100 1111112 122111111111110 02478999999999999998875
Q ss_pred ccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHH
Q 013948 169 AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKA 248 (433)
Q Consensus 169 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 248 (433)
....+..|...|....++.+...|...+-.||-.+|.+-. .-..-.+-.++++++.+...|++-|+.+|.+..+
T Consensus 400 -----kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 400 -----KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred -----cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 5777899999999999999999999999999999998743 3334456778999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhcccccccC
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA--EQKLREERQRTGWDQTTS 308 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 308 (433)
|...|..-..+|+.+.|.. .|+-|+....-+..-...-+.+ -...|.++.+...++...
T Consensus 474 W~kyaElE~~LgdtdRaRa-ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARA-IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 9999999999999999999 9999998765554433333333 345677788777776544
No 179
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.55 E-value=9.9e-08 Score=70.76 Aligned_cols=67 Identities=34% Similarity=0.643 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 209 GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 209 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
|+-..++.++|.+|..+|+|++|+.+|++++.+. |....++.++|.++..+|++++|+. ++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~-~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE-YYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhh
Confidence 4456789999999999999999999999999762 2236789999999999999999999 99999976
No 180
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.55 E-value=3.1e-06 Score=83.49 Aligned_cols=193 Identities=12% Similarity=0.046 Sum_probs=125.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--
Q 013948 208 CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPN-----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-- 279 (433)
Q Consensus 208 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-- 279 (433)
+|++..-|..+.. ...|+..+-+..|..|++. +|. ....|..+|..|...|+.+.|.. .|+++++.+=.
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv-ifeka~~V~y~~v 421 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV-IFEKATKVPYKTV 421 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH-HHHHhhcCCccch
Confidence 4555555555433 3456778888888877754 554 35789999999999999999999 99999987532
Q ss_pred --CHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh-----------hhhhhcC-------------CCCCCCCCcc-
Q 013948 280 --NEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE-----------SNQSTGG-------------FRSHGTPPSF- 332 (433)
Q Consensus 280 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~-------------~~~~~A~~~~- 332 (433)
-..+|..-|..-....+.+.|....+.+...|.... ...+... |-++.....|
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 256788888777778888888888777765444322 0111111 3333333334
Q ss_pred -cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc---cccccccc----ccccCCcHHHHHHHHH
Q 013948 333 -TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI---RIGGNINL----NFGENMPEDITGALRS 404 (433)
Q Consensus 333 -al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~~~----~l~~~~~~~~~~a~~~ 404 (433)
.+++-- --|....|.| ..+....-++++.+.|++.+.+-|=- ..+...+. .+|+...|.....++.
T Consensus 502 riidLri-----aTPqii~NyA-mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 502 RIIDLRI-----ATPQIIINYA-MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHhc-----CCHHHHHHHH-HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 555554 5567788888 88888888999999999988885432 22222221 2236667766666666
Q ss_pred HHhhc
Q 013948 405 MMEMF 409 (433)
Q Consensus 405 ~~~~~ 409 (433)
..+.+
T Consensus 576 aL~~C 580 (835)
T KOG2047|consen 576 ALDGC 580 (835)
T ss_pred HHhcC
Confidence 65543
No 181
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=2.1e-07 Score=85.47 Aligned_cols=189 Identities=16% Similarity=0.133 Sum_probs=136.8
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 188 VMQSQQYSDAIELYSFAIALCGNNA-VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
+....+|..|+..++-.+..+.+.. ..-..+|.|++++|+|++|+..|..+...+.-+.+.+.+|+.|++-+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 3456789999999988876654433 566778999999999999999999999988778899999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh--hhhhhcCCCCCCCCCcc--cccCCCCCCC
Q 013948 267 EKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE--SNQSTGGFRSHGTPPSF--TMPFNTNALP 342 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~--al~~~p~~~~ 342 (433)
. ...+ .|+++-....+-.+-.++++.++-..+.........+.. +....-.-+|++|+..| .+..+|
T Consensus 112 ~-~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~---- 182 (557)
T KOG3785|consen 112 S-IAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP---- 182 (557)
T ss_pred H-HHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh----
Confidence 8 6555 456655444444444556655544444333332222211 33333345677888888 777888
Q ss_pred ccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcccccccc
Q 013948 343 TDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNIN 387 (433)
Q Consensus 343 ~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~ 387 (433)
+....-..+| .+|..+.=++-+.+...--+..-|+....-|+.
T Consensus 183 -ey~alNVy~A-LCyyKlDYydvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 183 -EYIALNVYMA-LCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred -hhhhhHHHHH-HHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence 7777777788 788888888888888888888888884444443
No 182
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.52 E-value=1.8e-05 Score=70.63 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=136.4
Q ss_pred CCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHH
Q 013948 117 GVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSD 196 (433)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 196 (433)
..+..+++......+.. |+|++|+..|+++...+|.. +....+...++..+++.+++++
T Consensus 31 ~~p~~~LY~~g~~~L~~--------------gn~~~A~~~fe~l~~~~p~s-------~~~~qa~l~l~yA~Yk~~~y~~ 89 (254)
T COG4105 31 NLPASELYNEGLTELQK--------------GNYEEAIKYFEALDSRHPFS-------PYSEQAQLDLAYAYYKNGEYDL 89 (254)
T ss_pred CCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCC-------cccHHHHHHHHHHHHhcccHHH
Confidence 34677888888888877 99999999999999988875 4447899999999999999999
Q ss_pred HHHHHHHHHHhcCCCH---HHHHHHHHHHHHh--------hcHHHHHHHHHHHHhcCCCcH-----------------HH
Q 013948 197 AIELYSFAIALCGNNA---VYYSNRAAAYTQI--------HQYAEAVRDCLKSIDIDPNYS-----------------KA 248 (433)
Q Consensus 197 A~~~~~~al~~~p~~~---~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~-----------------~~ 248 (433)
|+...++-+.+.|+++ .+++..|.+++.. .-..+|+..++..+...|+.. .-
T Consensus 90 A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 90 ALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999874 5677788887643 224678999999999999842 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHhccccc
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
-+..|..|.+.|.|..|+. -++.+++..|+. .+++..+..+|..+|-.++|.....
T Consensus 170 Em~IaryY~kr~~~~AA~n-R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 170 EMAIARYYLKRGAYVAAIN-RFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHHHHhcChHHHHH-HHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 2346888999999999999 999999987765 4567777888889998888877655
No 183
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.48 E-value=2.7e-05 Score=77.06 Aligned_cols=318 Identities=11% Similarity=0.052 Sum_probs=219.0
Q ss_pred HHHHhhhhCCCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhh-cccCCCCCCCCcccCCCccc
Q 013948 20 FLHFLDSVEPAPGVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDAL-GIKSDNAPSSSSAQNMDAKF 98 (433)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 98 (433)
=++||.-+.+...+..+.+|.|...|.+++.---.- ....-+++.|..++...-. +++ ... .. ...+.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv----rDFt~ifd~Ya~FEE~~~~~~me-~a~----~~-~~n~e- 314 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV----RDFTQIFDAYAQFEESCVAAKME-LAD----EE-SGNEE- 314 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh----hhHHHHHHHHHHHHHHHHHHHHh-hhh----hc-ccChh-
Confidence 356777777778889999999999999998643222 1223445555555554331 111 000 00 00000
Q ss_pred hhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCC--------------CCcchHHHHHHHHHHHHHH-
Q 013948 99 SEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGN--------------DDPSQVDKASRIFHDAINE- 163 (433)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~g~~~~A~~~~~~al~~- 163 (433)
--...+--+..+...+...+.+.+..-.- .-.|+..+-+..|.+|++.
T Consensus 315 -----------------d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~v 377 (835)
T KOG2047|consen 315 -----------------DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTV 377 (835)
T ss_pred -----------------hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHcc
Confidence 01122222444455554444433321110 0237788888889888764
Q ss_pred HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 164 MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
+|... .......|..+|..|...|+.+.|...|++++..+-.. +.+|++.|..-+...+++.|+..++.|.
T Consensus 378 dP~ka-----~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 378 DPKKA-----VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred CcccC-----CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 45542 22346789999999999999999999999999875432 6789999999999999999999999998
Q ss_pred hcCCC-------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 013948 240 DIDPN-------------------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 240 ~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 300 (433)
.. |. ....|..++...-..|-++.... .|.+.+.+.--.|....+.+..+....-++++
T Consensus 453 ~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~-vYdriidLriaTPqii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 453 HV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA-VYDRIIDLRIATPQIIINYAMFLEEHKYFEES 530 (835)
T ss_pred cC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHH
Confidence 76 32 35678888888889999999999 99999999999999999999998888889999
Q ss_pred cccccccCCCccc---hh-hhhh-------hcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHH
Q 013948 301 TGWDQTTSSSHYS---QE-SNQS-------TGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 301 ~~~~~~~~~~~~~---~~-~~~~-------~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
...+++-...+.- .+ -+.| .++.+.+-|...| +++..| |......|...+ .+-..-|-...|+
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp---p~~aKtiyLlYA-~lEEe~GLar~am 606 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP---PEHAKTIYLLYA-KLEEEHGLARHAM 606 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH-HHHHHhhHHHHHH
Confidence 8888776643221 11 1222 3346667777777 888777 444555666777 7777779999999
Q ss_pred HHHhhhcCC
Q 013948 368 EDSNVSGSD 376 (433)
Q Consensus 368 ~~~~~al~l 376 (433)
..|++|-.-
T Consensus 607 siyerat~~ 615 (835)
T KOG2047|consen 607 SIYERATSA 615 (835)
T ss_pred HHHHHHHhc
Confidence 999997544
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.47 E-value=1.9e-05 Score=70.48 Aligned_cols=185 Identities=18% Similarity=0.149 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH---HHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS---KAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 251 (433)
+..|+..|...+..|+|++|++.|++....+|.. ..+...++.++++.+++++|+...++-+++.|.++ .+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 6789999999999999999999999999998876 57899999999999999999999999999998764 67888
Q ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhh
Q 013948 252 LGLAYYAQG--------NYNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQST 320 (433)
Q Consensus 252 lg~~~~~~g--------~~~~A~~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 320 (433)
.|.+++..= -..+|+. .|+..+...|++. .+...+..+...+..++-+ .+.+|.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~-~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~--------------IaryY~ 178 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFA-AFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMA--------------IARYYL 178 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHH-HHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 899977542 2456787 8999999999864 3333333333333222221 123444
Q ss_pred cCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 321 GGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 321 ~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..|.+-.|+.-+ .++--|+.. ...+++..+. .+|..+|-.++|...-+-.-..-|+.
T Consensus 179 kr~~~~AA~nR~~~v~e~y~~t~--~~~eaL~~l~-eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYPDTS--AVREALARLE-EAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HhcChHHHHHHHHHHHhcccccc--chHHHHHHHH-HHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 444444444444 333323111 4455677777 77999999999977544443334443
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.45 E-value=1.3e-05 Score=67.50 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--cHHHHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIA-LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN--YSKAYSRLGLA 255 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 255 (433)
.-.+.+|+.+...|++.+|..+|++++. +...++..+..++.+.+..+++..|...+++..+.+|. .+...+.+|.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 4567889999999999999999999985 46678999999999999999999999999999999986 57888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
+..+|.+.+|.. .|+.++...|+ +.+...++..+.++|+..++...+.
T Consensus 170 laa~g~~a~Aes-afe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 170 LAAQGKYADAES-AFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHhcCCchhHHH-HHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 999999999999 99999999885 6777888888888887766655433
No 186
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=2.9e-06 Score=92.87 Aligned_cols=223 Identities=7% Similarity=-0.082 Sum_probs=156.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|...+++++...+... ......+...+|.++...|++++|...+.+++...... ..++.++|.
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~-----~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTW-----YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCcc-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 5899999999999998654331 11234567788999999999999999999999764321 346778899
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-----CHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPN--------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-----NEAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-----~~~~~~~l 287 (433)
++...|++++|...+++++.+... ....+..+|.++...|++++|.. .+.+++.+... ....+..+
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ-CARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH-HHHHhHHhhhccCchHHHHHHHHH
Confidence 999999999999999999886221 23446678999999999999999 99999876332 24456667
Q ss_pred HHHHHHHHHHHHhcccccccCC----Cc--cch-------hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHH
Q 013948 288 RMAEQKLREERQRTGWDQTTSS----SH--YSQ-------ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNM 352 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~----~~--~~~-------~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~l 352 (433)
+.++...|+++.|......+.. .. ... ....+...|+.+.|...+ .....+ ..+......+..+
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~ 697 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHH
Confidence 8888888988888776544421 10 000 012233456666666655 222111 0010122235678
Q ss_pred hhcccccCCChhhHHHHHhhhcCCC
Q 013948 353 ASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 353 a~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
+ .++...|++++|...+.+++...
T Consensus 698 a-~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 698 A-RAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred H-HHHHHcCCHHHHHHHHHHHHHHH
Confidence 8 88999999999999999998763
No 187
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.43 E-value=9.6e-07 Score=82.61 Aligned_cols=165 Identities=10% Similarity=0.059 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
.......|.++...|++++|++.+.+. .+.++......+++.+++++.|.+.++..-+.+.+..-..+..+.+..
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l 176 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 345566677888899999999888764 577888888899999999999999999999999888777777777777
Q ss_pred HcC--CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccccc
Q 013948 258 AQG--NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMP 335 (433)
Q Consensus 258 ~~g--~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~ 335 (433)
..| .+.+|.. .|+......|.++..+..++.++..+|++++|...... ++.
T Consensus 177 ~~g~e~~~~A~y-~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~--------------------------al~ 229 (290)
T PF04733_consen 177 ATGGEKYQDAFY-IFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE--------------------------ALE 229 (290)
T ss_dssp HHTTTCCCHHHH-HHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH--------------------------HCC
T ss_pred HhCchhHHHHHH-HHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH--------------------------HHH
Confidence 766 5999999 99998888888999999999999999999999886552 567
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCCh-hhHHHHHhhhcCCCCCc
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQ-SRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~-~~A~~~~~~al~l~P~~ 380 (433)
.+| .++.++.+++ .+...+|+. +.+.+...+....+|+.
T Consensus 230 ~~~-----~~~d~LaNli-v~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 230 KDP-----NDPDTLANLI-VCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp C-C-----CHHHHHHHHH-HHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred hcc-----CCHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 889 9999999999 888888988 55666666666678874
No 188
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=6.4e-07 Score=80.64 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=134.3
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
.+..+|..||+++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+..++.+++.+.+..|+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr- 99 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR- 99 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH-
Confidence 5677899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhCCCCHHHHHHH----HHHHHHHHHHHHhcccccccC-CCcc---chhhhhhhcCCCCCCCCCcc--cccCCC
Q 013948 269 GFKKALQLDPNNEAVKENI----RMAEQKLREERQRTGWDQTTS-SSHY---SQESNQSTGGFRSHGTPPSF--TMPFNT 338 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~-~~~~---~~~~~~~~~~~~~~~A~~~~--al~~~p 338 (433)
....... ++...... +.+....++...+........ .... ...+-+..+.|+|+.|++.| +++...
T Consensus 100 V~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 100 VAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 6555432 23222221 222222222222222111111 0111 11133455669999999999 888887
Q ss_pred CCCCccHHHHHHHHhhcccccCCChhhHHHHHhh----hcCCCCCc
Q 013948 339 NALPTDIASMLMNMASNMPQAQPSQSRQGEDSNV----SGSDEPGI 380 (433)
Q Consensus 339 ~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~----al~l~P~~ 380 (433)
-.+..-++++ .++...|+++.|++.... .+...|+.
T Consensus 176 -----yqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 176 -----YQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred -----CCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 7778889999 899999999999977655 45567776
No 189
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.41 E-value=7e-06 Score=64.99 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=81.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 222 (433)
.|+++.|++.|.++|.+.|+. +.+|++.+..+.-+|+.++|++.+++++++.... ..++..+|.+|
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~r----------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPER----------ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred ccchHHHHHHHHHHHHhcccc----------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 589999999999999999988 8999999999999999999999999999996554 46799999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCc
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~ 245 (433)
..+|+.+.|...|..+-++...+
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999988876543
No 190
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=9.6e-06 Score=71.19 Aligned_cols=105 Identities=26% Similarity=0.335 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCC----------HHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------CGNN----------AVYYSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
..++...|+-++..|+|.+|...|..|+.. .|.+ ..++.|++.|++..|+|-++++.+..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 557788999999999999999999999743 3444 3578999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHH
Q 013948 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283 (433)
Q Consensus 240 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~ 283 (433)
...|.+..+++..|.++...=+..+|.. .|.++|+++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~-D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKA-DLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHH-HHHHHHhcChhhHHH
Confidence 9999999999999999999999999999 999999999975543
No 191
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.38 E-value=7.7e-06 Score=68.92 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS----------QQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
-|+.|.+.++.....+|.+ ++.++.-|..+... .-+++|+.-|++||.++|+...+++++
T Consensus 6 ~FE~ark~aea~y~~nP~D----------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~l 75 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLD----------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCL 75 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-----------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHh----------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4778999999999999987 66666666655433 346889999999999999999999999
Q ss_pred HHHHHHhhc-----------HHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 219 AAAYTQIHQ-----------YAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 219 a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
|.+|..++. |++|..+|++|...+|++......|.
T Consensus 76 GnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 76 GNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999988764 78899999999999999975544443
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.38 E-value=8.6e-06 Score=76.55 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=126.9
Q ss_pred HHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 128 FAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
.....+-..|.+++..+.-+|+|+.|+...+.-|.+....+ +....-.++.++|+++...|+++.|+++|.+.+.+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG----DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG----DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh----hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 33334445566777777778999999999999888876653 22334678999999999999999999999987654
Q ss_pred c----C--CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 208 C----G--NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 208 ~----p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
. . ..+...|.+|..|.-..++.+||.++.+-+.+... -..++..||.++..+|..++|+. +.++.++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~-fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY-FAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH-HHHHHHH
Confidence 2 1 23567889999999999999999999987776432 45788899999999999999998 7777665
Q ss_pred h----C-CC-CHHHHHHHHHHHHHHHHHH
Q 013948 276 L----D-PN-NEAVKENIRMAEQKLREER 298 (433)
Q Consensus 276 ~----~-p~-~~~~~~~l~~~~~~~~~~~ 298 (433)
+ + +. ...+..+|......+|..+
T Consensus 344 ~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 344 SSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 4 2 22 3456677777777777644
No 193
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.35 E-value=4.4e-05 Score=67.52 Aligned_cols=191 Identities=22% Similarity=0.266 Sum_probs=153.6
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIA--LCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~ 225 (433)
+.+..+...+...+...+.. .........+..+...+++..++..+...+. ..+.....+...+.++...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (291)
T COG0457 37 GELAEALELLEEALELLPNS--------DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL 108 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc--------cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 45666666777766665431 1256778888999999999999999999997 6888899999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHhc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGL-AYYAQGNYNDAIEKGFKKALQLDP---NNEAVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~a~ 301 (433)
+++..++..+.+++...+.........+. ++...|+++.|.. .+.+++..+| .........+..+...++...+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALE-LYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 99999999999999998888666777777 8999999999999 9999988777 34455555555555556666665
Q ss_pred ccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCcc-HHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 302 GWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTD-IASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~-~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
..... ++...+ . ....+..++ ..+...+++++|...+.+++...|.
T Consensus 188 ~~~~~--------------------------~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 188 ELLEK--------------------------ALKLNP-----DDDAEALLNLG-LLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHH--------------------------HHhhCc-----ccchHHHHHhh-HHHHHcccHHHHHHHHHHHHhhCcc
Confidence 55442 455566 5 577888999 8999999999999999999999998
No 194
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.29 E-value=5e-05 Score=81.10 Aligned_cols=193 Identities=10% Similarity=0.116 Sum_probs=146.4
Q ss_pred CCchhHHHHHHHHHHhh-cCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCccccc
Q 013948 33 VDLEGLEVARECLTEVF-KLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTE 111 (433)
Q Consensus 33 ~~~~~~e~A~~~~~kAl-~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (433)
+....+|+|++..++|| .||+...+ -.-+++.+|.+++.+.-
T Consensus 1469 LelsEiekAR~iaerAL~tIN~REee---EKLNiWiA~lNlEn~yG---------------------------------- 1511 (1710)
T KOG1070|consen 1469 LELSEIEKARKIAERALKTINFREEE---EKLNIWIAYLNLENAYG---------------------------------- 1511 (1710)
T ss_pred hhhhhhHHHHHHHHHHhhhCCcchhH---HHHHHHHHHHhHHHhhC----------------------------------
Confidence 46677999999999999 68887762 12222233333322211
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Q 013948 112 EPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS 191 (433)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~ 191 (433)
...+..+.|+++.+....+..+..+...+...+.+++|.++++..++.+.+. ...|..+|..+++.
T Consensus 1512 ----~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1512 ----TEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQ 1577 (1710)
T ss_pred ----cHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcc
Confidence 0012344566666666655666666555556788899999999998887643 77899999999999
Q ss_pred cCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 192 QQYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
.+-+.|...+.+|+..-|. +....-..|.+.++.|+.+.+...|+-.+..+|.-...|.-+...-...|+.+-... .
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~-l 1656 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRD-L 1656 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHH-H
Confidence 9889999999999998887 678888889999999999999999999999999999999988888888999888888 9
Q ss_pred HHHHHhhC
Q 013948 270 FKKALQLD 277 (433)
Q Consensus 270 ~~~al~~~ 277 (433)
|++++.+.
T Consensus 1657 feRvi~l~ 1664 (1710)
T KOG1070|consen 1657 FERVIELK 1664 (1710)
T ss_pred HHHHHhcC
Confidence 99988764
No 195
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.26 E-value=1.6e-05 Score=73.68 Aligned_cols=225 Identities=11% Similarity=0.067 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 013948 122 ELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELY 201 (433)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 201 (433)
..+.++.+.+..+..+....+...+.|.+++++.+--..|+...... +..-...++.+++..+....++.+++.+-
T Consensus 31 ~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~----ds~~~~ea~lnlar~~e~l~~f~kt~~y~ 106 (518)
T KOG1941|consen 31 KVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE----DSDFLLEAYLNLARSNEKLCEFHKTISYC 106 (518)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44667777777777777777777788999988877655555433221 11223678888999999899999999888
Q ss_pred HHHHHhcCCC-----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 013948 202 SFAIALCGNN-----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGNYNDAIEKGF 270 (433)
Q Consensus 202 ~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~ 270 (433)
+..+.+-..+ .....-+|.++..++.++++++.|++|++...++ -.++..||..+.++.++++|.- +.
T Consensus 107 k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~-f~ 185 (518)
T KOG1941|consen 107 KTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALF-FP 185 (518)
T ss_pred HHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhh-hh
Confidence 8777664333 3566778999999999999999999999985443 2577889999999999999999 89
Q ss_pred HHHHhhCCC----CH------HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCC
Q 013948 271 KKALQLDPN----NE------AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNA 340 (433)
Q Consensus 271 ~~al~~~p~----~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~ 340 (433)
.+|.++-.. +. -+.+.++..+..+|....|.++-+.+..... .....|
T Consensus 186 ~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal--------------------~~Gdra-- 243 (518)
T KOG1941|consen 186 CKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL--------------------QHGDRA-- 243 (518)
T ss_pred HhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH--------------------HhCChH--
Confidence 999876432 22 3567788888888888777776443221000 112234
Q ss_pred CCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 341 LPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 341 ~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
-.+....-+| .+|...|+.+.|..-|+.|....
T Consensus 244 ---~~arc~~~~a-DIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 244 ---LQARCLLCFA-DIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred ---HHHHHHHHHH-HHHHhcccHhHHHHHHHHHHHHH
Confidence 6677788889 99999999999999998886543
No 196
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=1.2e-05 Score=69.49 Aligned_cols=121 Identities=21% Similarity=0.099 Sum_probs=99.3
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|-+.-|.--|.+++.+.|+- +.+++.+|..+...|+|+.|.+.|...++++|...-++.|+|..++--
T Consensus 77 SlGL~~LAR~DftQaLai~P~m----------~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDM----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 146 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCc----------HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec
Confidence 4788999999999999998876 999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~ 277 (433)
|+|.-|.+.+.+--..+|++|.--..+-..- ..-+..+|.....+++-..+
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d 197 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSD 197 (297)
T ss_pred CchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999974333332222 23455666651334454444
No 197
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=6.2e-05 Score=72.12 Aligned_cols=198 Identities=11% Similarity=0.029 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...|...|.--..++++..|..+|++||..+..+..+|...+.+-++.++...|...+++|+.+-|.-...|+..-.+--
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-Cccch-h---hhhhhcCCCCCCCCCcc
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQ-E---SNQSTGGFRSHGTPPSF 332 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~---~~~~~~~~~~~~A~~~~ 332 (433)
.+|+...|.+ .|++-++..|+ ..+|......-......+.|...+..-.. .|.-. . +.+-...|+...+...|
T Consensus 153 ~LgNi~gaRq-iferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQ-IFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHH-HHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999 99999999985 56777777777777888888888776543 22211 1 23344557666666666
Q ss_pred --cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 333 --TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 333 --al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
|++.-. .+......+...| ..-..+..++.|...|+-||.--|.+
T Consensus 231 erAie~~~--~d~~~e~lfvaFA-~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 231 ERAIEFLG--DDEEAEILFVAFA-EFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred HHHHHHhh--hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 444333 0113444555555 55566677888888888888777764
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.18 E-value=3.7e-06 Score=54.62 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
|+.+|.+|..+|++++|+..|+++++.+|+++.+|..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 33344444444444444444444444444444444433
No 199
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.11 E-value=7e-06 Score=53.28 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
|.+++.+|.+|..+|++++|+. .|+++++.+|+++.+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~-~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAER-LLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999999999999999 999999999999999999875
No 200
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.10 E-value=2.6e-06 Score=78.29 Aligned_cols=96 Identities=31% Similarity=0.511 Sum_probs=89.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
...+.-.+..|.++.|++.|..+|.++|..+.++..++.++++++++..|+..|..+++++|+....|-..|.+...+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 33445566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCC
Q 013948 262 YNDAIEKGFKKALQLDP 278 (433)
Q Consensus 262 ~~~A~~~~~~~al~~~p 278 (433)
|++|.. .+..+.+++=
T Consensus 198 ~e~aa~-dl~~a~kld~ 213 (377)
T KOG1308|consen 198 WEEAAH-DLALACKLDY 213 (377)
T ss_pred hHHHHH-HHHHHHhccc
Confidence 999999 9999998863
No 201
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.08 E-value=3.7e-06 Score=51.08 Aligned_cols=31 Identities=39% Similarity=0.755 Sum_probs=15.2
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 013948 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 235 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 265 (433)
|+++|+++|+++.+|+++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444555555555555555444544444
No 202
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.06 E-value=4e-06 Score=50.93 Aligned_cols=34 Identities=41% Similarity=0.474 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHH
Q 013948 200 LYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR 233 (433)
Q Consensus 200 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 233 (433)
+|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 203
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.05 E-value=1.2e-05 Score=74.49 Aligned_cols=232 Identities=12% Similarity=0.073 Sum_probs=138.1
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
+...+++|+....+.++.-.+..+-+.++|.+....-.+....+...-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~-------------------------------- 65 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF-------------------------------- 65 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH--------------------------------
Confidence 455678888888888877766666666777776666666555442200
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
..+.-..+....+.......|.+....+....++.+++.+.+-.+.+-...+.. .-..+...+|+.+...+.
T Consensus 66 ---a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~-----~~gq~~l~~~~Ahlgls~ 137 (518)
T KOG1941|consen 66 ---AVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ-----LGGQVSLSMGNAHLGLSV 137 (518)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc-----ccchhhhhHHHHhhhHHH
Confidence 001111222233333333333333333333455666666555555542222111 113455567777777788
Q ss_pred HHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGN--N----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN----------YSKAYSRLGLAYY 257 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~ 257 (433)
|+++++.|++|++...+ | ..++..+|..+..+.++++|+-+..+|.++... ..-+.+.++..+.
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR 217 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR 217 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH
Confidence 88888888888776332 2 346777888888888888888888887776432 1345666777777
Q ss_pred HcCCHHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 258 AQGNYNDAIEKGFKKALQLD------PNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
.+|..-.|.+ +.+++.++. +-.......++.+|...|+.+.+...|+.
T Consensus 218 ~~G~LgdA~e-~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 218 LLGRLGDAME-CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccccHHH-HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 8888888877 777776542 22334556677777777777666555443
No 204
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.03 E-value=0.00013 Score=74.89 Aligned_cols=217 Identities=13% Similarity=0.002 Sum_probs=154.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++|.+|.....+.++.+|+. ..+....|..+.+.|+.++|..+++..-...++|-..+.-+-.||..++
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~----------~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA----------LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc----------HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 489999999999999998887 7888889999999999999998888766677788888889999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHHHHHHHhcc---
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN-IRMAEQKLREERQRTG--- 302 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~a~~--- 302 (433)
++++|..+|++++..+|. .+..+.+=.+|.+-+.|.+=.+ .--+..+..|+++-..+. +..+.......+....
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk-aa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK-AALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 999999999999999999 8888888899999998887666 555666677877654433 3333333322222221
Q ss_pred ------cccccCCCc--c--chhh----hhhhcCCCCCCCCCcc---cccCCCCCCCccHHHHHHHHhhcccccCCChhh
Q 013948 303 ------WDQTTSSSH--Y--SQES----NQSTGGFRSHGTPPSF---TMPFNTNALPTDIASMLMNMASNMPQAQPSQSR 365 (433)
Q Consensus 303 ------~~~~~~~~~--~--~~~~----~~~~~~~~~~~A~~~~---al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~ 365 (433)
..+.....+ . ..+. .+.-..|++++|++.+ ..+..+ .......+++...+...+++.+
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~-----~~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT-----SANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHHhcChHH
Confidence 111111111 1 1222 2334558899998887 223333 2233343344356677788888
Q ss_pred HHHHHhhhcCCCCCc
Q 013948 366 QGEDSNVSGSDEPGI 380 (433)
Q Consensus 366 A~~~~~~al~l~P~~ 380 (433)
-.+...+++.-+|++
T Consensus 245 l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 245 LFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHhCCcc
Confidence 877777777777775
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00012 Score=65.13 Aligned_cols=137 Identities=18% Similarity=0.193 Sum_probs=113.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----c--CCCHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL----C--GNNAVYYSNRA 219 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~la 219 (433)
..|+|.-+...+.+++..+|.. .+.....+|.+.++.|+.+.|..+|++.-+. + .......-+.+
T Consensus 189 G~kEy~iS~d~~~~vi~~~~e~---------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 189 GMKEYVLSVDAYHSVIKYYPEQ---------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred cchhhhhhHHHHHHHHHhCCcc---------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4578888899999999977443 2667788999999999999999999854432 2 22356777888
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKENIRMAEQ 292 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~---~~~~~~l~~~~~ 292 (433)
.++...++|.+|...|.+++..+|.++.+..+.|.|+..+|+...|++ .++.++...|.. ..+..+|-.++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK-~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK-QLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH-HHHHHhccCCccchhhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999999999963 445555554443
No 206
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.00061 Score=59.77 Aligned_cols=131 Identities=17% Similarity=0.157 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-QQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
++..+|+.+++++++++..-+.- ..-+.-+..+|.+|... .++++||.+|+++-+-...+ -.++...|.
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf----~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRF----TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHH----HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 68999999999999998765311 11245566899998876 89999999999998765433 245666677
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYS-------KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~ 283 (433)
.-..+++|.+|+..|+++....-++. ..++.-|.|++-..+.-.+.. .+++..+++|.....
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~-ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQR-ALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHH-HHHHHHhcCCccccc
Confidence 77889999999999999988766654 334556888888888888888 899999999986543
No 207
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.7e-05 Score=68.22 Aligned_cols=88 Identities=16% Similarity=0.057 Sum_probs=82.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013948 144 NDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYT 223 (433)
Q Consensus 144 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 223 (433)
+.....|+.|+..|.++|.++|.. +..|.+.+.|+++.++|+.......+++++.|+.+..++.+|.+..
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~----------~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTV----------ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCc----------chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 334678999999999999999987 7888999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHHHhc
Q 013948 224 QIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~ 241 (433)
....|++|+..+.++..+
T Consensus 90 ~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhccccHHHHHHHHHHHH
Confidence 999999999999999766
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.96 E-value=0.00018 Score=60.87 Aligned_cols=152 Identities=11% Similarity=0.039 Sum_probs=117.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHH
Q 013948 187 RVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPNYSKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 187 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A 265 (433)
...+.=+.+....-..+.++.-|.. .-.+.+|..+.++|++.+|...|++++.- .-.++...+.++++.+..+++..|
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3344446666666667777776644 55678999999999999999999999874 567888999999999999999999
Q ss_pred HHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCc
Q 013948 266 IEKGFKKALQLDPN--NEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPT 343 (433)
Q Consensus 266 ~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~ 343 (433)
.. .+++..+.+|. .+.....+++++...|++.+|+.-++. ++.--|
T Consensus 144 ~~-tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~--------------------------a~~~yp----- 191 (251)
T COG4700 144 QQ-TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV--------------------------AISYYP----- 191 (251)
T ss_pred HH-HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH--------------------------HHHhCC-----
Confidence 99 99999999885 567788889999999988877665542 233334
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.+.+....+ .++..+|+.++|.+-|...
T Consensus 192 -g~~ar~~Y~-e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 192 -GPQARIYYA-EMLAKQGRLREANAQYVAV 219 (251)
T ss_pred -CHHHHHHHH-HHHHHhcchhHHHHHHHHH
Confidence 235566677 7888899888887766544
No 209
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.95 E-value=1.5e-05 Score=76.80 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=99.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++|+.|+..|.++|+++|++ +..+-+.+..+.+.++|..|+.-+.+||+.+|....+|+..|.+...++
T Consensus 17 ~~~fd~avdlysKaI~ldpnc----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNC----------AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcc----------eeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 489999999999999999988 7778888889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--cCCHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA--QGNYNDAIE 267 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~ 267 (433)
.+.+|+..|++...+.|+.+.+...+-.|-.. ...++.|+.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~ 129 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAIL 129 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999998888777543 333444443
No 210
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00024 Score=63.46 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=112.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ- 224 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 224 (433)
..|++++|......... .++...--.++.+..+++-|...+++...++.+ ..+..||.++.+
T Consensus 120 ~~~~~deAl~~~~~~~~---------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~l 182 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGEN---------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKL 182 (299)
T ss_pred cCCChHHHHHHHhccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHH
Confidence 45888998887777433 344555567888899999999999999887643 344445554443
Q ss_pred ---hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhc
Q 013948 225 ---IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 225 ---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 301 (433)
.+++.+|.-.|+..-...|..+.....++.|+..+|+|++|.. .++.+|..++++++++.++..+-...|...++.
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~-lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES-LLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH-HHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 3468999999999999888899999999999999999999999 999999999999999999999988888865554
Q ss_pred cc
Q 013948 302 GW 303 (433)
Q Consensus 302 ~~ 303 (433)
..
T Consensus 262 ~r 263 (299)
T KOG3081|consen 262 ER 263 (299)
T ss_pred HH
Confidence 43
No 211
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.93 E-value=0.00061 Score=70.25 Aligned_cols=212 Identities=12% Similarity=0.036 Sum_probs=146.7
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
...+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+-.+-.||..++++++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~- 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH- 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH-
Confidence 4578999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH----hcccccccCCCccchh--hhhhhcC-CCCCCCCC-cc--------
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQ----RTGWDQTTSSSHYSQE--SNQSTGG-FRSHGTPP-SF-------- 332 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~--~~~~~~~-~~~~~A~~-~~-------- 332 (433)
.|++++..+|+ .+....+=.+|.+.+.+.+ |...+......+...+ ..++++. ...+.... .+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999999 7777777777766665433 4555665555555444 2333333 33444433 22
Q ss_pred --cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhh--hcCCCCCcccccccccccc--cCCcHHHHHHHHHHH
Q 013948 333 --TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNV--SGSDEPGIRIGGNINLNFG--ENMPEDITGALRSMM 406 (433)
Q Consensus 333 --al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~--al~l~P~~~~~~~~~~~l~--~~~~~~~~~a~~~~~ 406 (433)
.++.. + .-...+++...+ .++..+|.+++|.+.+.. +-.+-+.+...-+..+.+. -..+.++.+...++.
T Consensus 178 ~~~l~~~-g-k~~s~aE~~Lyl--~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 178 QKLLEKK-G-KIESEAEIILYL--LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHhccC-C-ccchHHHHHHHH--HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 22222 1 112333443333 356778999999998844 2233333344444444443 345555444444444
No 212
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.92 E-value=2.1e-05 Score=47.75 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
|+++|.++..+|++++|+.+|+++++++|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 33444444444444444444444444433
No 213
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0011 Score=58.61 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=102.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
...|.++..+++++..+.-+++ .|+.+..-...+--....-++++|+.+|++++.+-..+ .+.+-..+.
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~G-----spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECG-----SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhC-----CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 4678899999999999988874 44445555566666778889999999999999875443 456777889
Q ss_pred HHHHhhcHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC----CCCHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD----PNNEAVKENIRMA 290 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~----p~~~~~~~~l~~~ 290 (433)
++.+.++|.+|-..+.+-... .|+.-..+...-.+|....+|..|.. +++..-++. |.+..+..+|-..
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aek-c~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEK-CYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHH-HhcchhcCccccChHHHHHHHHHHHH
Confidence 999999999998888765433 24444556666667777789999999 999877653 4445555555444
Q ss_pred H
Q 013948 291 E 291 (433)
Q Consensus 291 ~ 291 (433)
|
T Consensus 238 y 238 (308)
T KOG1585|consen 238 Y 238 (308)
T ss_pred h
Confidence 3
No 214
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0031 Score=55.48 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhCCCCHH--
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQ-GNYNDAIEKGFKKALQLDPNNEA-- 282 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~~al~~~p~~~~-- 282 (433)
...|...+.||.+ .++.+|+.++++++.+.-+. +..+..+|.+|..- .++++|+. +|+++-+.......
T Consensus 74 at~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~-~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 74 ATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIA-HYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHH-HHHHHHHHHcchhhhh
Confidence 3445555555544 37777777777777765443 23344677777543 77777777 77777665433211
Q ss_pred ----HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc
Q 013948 283 ----VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 283 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
.+.-.+..-..++++.+|+..+..+..... +.+-..-.....++.-| .++.
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~------------------------~n~LLKys~KdyflkAg-LChl 206 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL------------------------DNNLLKYSAKDYFLKAG-LCHL 206 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------------cchHHHhHHHHHHHHHH-HHhH
Confidence 222233334456677777666554321110 00000002223344444 5666
Q ss_pred cCCChhhHHHHHhhhcCCCCCc--ccccccccccc----cCCcHHHHHHHHHH
Q 013948 359 AQPSQSRQGEDSNVSGSDEPGI--RIGGNINLNFG----ENMPEDITGALRSM 405 (433)
Q Consensus 359 ~~g~~~~A~~~~~~al~l~P~~--~~~~~~~~~l~----~~~~~~~~~a~~~~ 405 (433)
-..+.-.+....++-.+++|.+ +.-.+++-.|. +.+.+.+.+..+.+
T Consensus 207 ~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkef 259 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEF 259 (288)
T ss_pred hcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 6567666777777778888988 55566665552 55555555554443
No 215
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.001 Score=58.74 Aligned_cols=219 Identities=11% Similarity=0.036 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAY 222 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 222 (433)
...++.+...+.+..+..++ ...+..|..-+.++...++|++|..++.+|++-..++ +..+-..|.+.
T Consensus 8 ki~ea~e~~a~t~~~wkad~------dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLa 81 (308)
T KOG1585|consen 8 KISEADEMTALTLTRWKADW------DGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLA 81 (308)
T ss_pred HHHHHHHHHHHHhhccCCCc------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 44555555555544332221 1224556666777888899999999999999665544 34566677788
Q ss_pred HHhhcHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDI-----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVKENIRMAE 291 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~~~l~~~~ 291 (433)
..+..+.++..+|++|..+ .|+....-+..+-=....-+.++|++ .|++++.+-..+ .+.+-..++++
T Consensus 82 ke~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~Alq-lYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 82 KELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQ-LYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHH-HHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 8889999999999999987 35555445555555667788999999 999988764332 23344556677
Q ss_pred HHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 292 QKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
..+.++.+|.....+...... -...-| +....+.... .++....++..|..+|+
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~--------------------~~~~y~-----~~~k~~va~i-lv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAAD--------------------KCDAYN-----SQCKAYVAAI-LVYLYAHDYVQAEKCYR 214 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHH--------------------HHhhcc-----cHHHHHHHHH-HHHhhHHHHHHHHHHhc
Confidence 777777776655442110000 122234 4455566666 66777789999999999
Q ss_pred hhcCC----CCCc-ccccccccccccCCcHHHHH
Q 013948 372 VSGSD----EPGI-RIGGNINLNFGENMPEDITG 400 (433)
Q Consensus 372 ~al~l----~P~~-~~~~~~~~~l~~~~~~~~~~ 400 (433)
..-+. .|++ ....|++......++|.+..
T Consensus 215 ~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~k 248 (308)
T KOG1585|consen 215 DCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKK 248 (308)
T ss_pred chhcCccccChHHHHHHHHHHHHhccCCHHHHHH
Confidence 86443 4444 66667765553556665544
No 216
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.86 E-value=3e-05 Score=47.10 Aligned_cols=34 Identities=47% Similarity=0.947 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
+.+|+++|.++..+|++++|+. +|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALE-YYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHH-HHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHH-HHHHHHHHCcCC
Confidence 4689999999999999999999 999999999974
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00032 Score=64.62 Aligned_cols=149 Identities=9% Similarity=-0.030 Sum_probs=123.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCc---HHHHHHHHHHHHH
Q 013948 183 CQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPNY---SKAYSRLGLAYYA 258 (433)
Q Consensus 183 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~ 258 (433)
..+.+....|++.+|.....+.++..|.+.-++..--.++..+|+...-...+++++-. +|+. ..+.-.++..+..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556677899999999999999999999988888888899999999999999999987 6665 5667778899999
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh----------hhhhhcCCCCCCC
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE----------SNQSTGGFRSHGT 328 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~~~A 328 (433)
.|-|++|.+ ...+++++||.+..+...++.++...+++.++.++.......-.+.. +..+..++.|+.|
T Consensus 188 ~g~y~dAEk-~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 188 CGIYDDAEK-QADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hccchhHHH-HHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 999999999 99999999999999999999999999999998888665442211111 3456777899999
Q ss_pred CCcc
Q 013948 329 PPSF 332 (433)
Q Consensus 329 ~~~~ 332 (433)
++.|
T Consensus 267 leIy 270 (491)
T KOG2610|consen 267 LEIY 270 (491)
T ss_pred HHHH
Confidence 9888
No 218
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.83 E-value=4.7e-05 Score=46.13 Aligned_cols=29 Identities=62% Similarity=1.024 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
|+.+|.+++.+|++++|+. +|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~-~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIE-YFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHH-HHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHH-HHHHHHHHCc
Confidence 3333333333344444433 3333333333
No 219
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.82 E-value=5.2e-05 Score=45.90 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 245 (433)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
No 220
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0003 Score=62.04 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=90.0
Q ss_pred hhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccc-cccchh-------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 013948 135 HYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGA-HAYNQK-------NLAEIFKCQGNRVMQSQQYSDAIELYSFAIA 206 (433)
Q Consensus 135 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 206 (433)
+.+...++.....|+|.+|...|+.|+....+-.. ..+..+ .....+.+..+|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 33444444444579999999999999875433210 011111 2245677889999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHH
Q 013948 207 LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAY 249 (433)
Q Consensus 207 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 249 (433)
.+|.+..+++.+|.+....-+.++|...+.++++++|....+-
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999999999999999999999999865443
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.79 E-value=0.0011 Score=64.65 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCcHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPNYSKAYSRLGL 254 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~ 254 (433)
..+...+|.|..+.|+.++|++.++..++.+|. +..++.++-.+++.++.|.++...+.+-=.+ -|..+...+..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 456677999999999999999999999988876 4678999999999999999999988886433 2666777776666
Q ss_pred HHHHc-CC---------------HHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 255 AYYAQ-GN---------------YNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 255 ~~~~~-g~---------------~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
.-.+. ++ -..|++ .+.+|++.||.-+..+.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~ave-Ai~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVE-AIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHH-HHHHHHHhCCCCchhhh
Confidence 54332 21 134677 89999999998776543
No 222
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.79 E-value=0.00046 Score=74.07 Aligned_cols=204 Identities=12% Similarity=0.008 Sum_probs=155.4
Q ss_pred cchHHHHHHHHHHHHHHH-hhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEM-EKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.++.++|.+.+++||.-. +.. .......|..+-+....-|.-+.-.+.|++|.+.+ +-...|..|.-+|...
T Consensus 1471 lsEiekAR~iaerAL~tIN~RE------eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ 1543 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFRE------EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKS 1543 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcch------hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHh
Confidence 789999999999998754 322 12224455555555555677777888999998765 4567888888999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
+++++|.+.++..++...+....|..+|..++++.+-++|.. .+.+||+.-|. +.+...-.+....+.|+.+++...
T Consensus 1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~-lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARE-LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHH-HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHH
Confidence 999999999999999888888999999999999999999999 99999999888 666677778888888888887665
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh--cCCCCCc-
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS--GSDEPGI- 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a--l~l~P~~- 380 (433)
+.. .+...| .....|.-+. ..-...|+.+.+...|+|+ +.+.|..
T Consensus 1623 fEg--------------------------ll~ayP-----KRtDlW~VYi-d~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1623 FEG--------------------------LLSAYP-----KRTDLWSVYI-DMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHH--------------------------HHhhCc-----cchhHHHHHH-HHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 442 355567 7777777777 7777788888888888885 4688877
Q ss_pred cccccccccc
Q 013948 381 RIGGNINLNF 390 (433)
Q Consensus 381 ~~~~~~~~~l 390 (433)
-+..+.-+.+
T Consensus 1671 KfffKkwLey 1680 (1710)
T KOG1070|consen 1671 KFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHH
Confidence 3333333344
No 223
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.0013 Score=61.43 Aligned_cols=125 Identities=10% Similarity=0.126 Sum_probs=94.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ-SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.+..+.|..+|.+|+...+.. ...|...|.+.+. .++.+.|..+|+.+++..|.+..+|......+...
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~----------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCT----------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-----------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hCChHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 356788888888887432222 5677778888666 56777799999999999999999998888888999
Q ss_pred hcHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 226 HQYAEAVRDCLKSIDIDPNYS---KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
++.+.|...|++++..-|... ..|......-...|+.+.... ..+++.+..|.+..
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~-v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK-VEKRAEELFPEDNS 142 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH-HHHHHHHHTTTS-H
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhhhhhH
Confidence 999999999999988866654 577777777788888888888 88888888887443
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0005 Score=61.32 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc----C--CCcHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI----D--PNYSKA 248 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~ 248 (433)
....+.+.+..++...|+|.-.+..+.+.++.+ |.++.....+|.+.++.|+.+.|..+++.+-+. + ..+.-+
T Consensus 175 Rl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 175 RLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 345677888899999999999999999999998 668999999999999999999999999955433 2 234567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
..+.+.++.-.++|..|.. .+.+++..+|.++.+..+.+.|...+|+..+|.+....+
T Consensus 255 ~~n~a~i~lg~nn~a~a~r-~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHR-FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred HhhhhhheecccchHHHHH-HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999 999999999999999999999999999999998876643
No 225
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0015 Score=58.49 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=102.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..+++-|.+..++..+.+.+. .-...+.+|..++ ...+++..|.-+|+..-+..|..+.....++.|.+.++
T Consensus 150 ~~r~d~A~~~lk~mq~ided~-----tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDA-----TLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHccchHH-----HHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 457788888888887775542 0111233333332 23457999999999999888889999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
+|++|...++.++..+++++..+.++-.+-...|.-.++..+.+.+.....|..+-
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 99999999999999999999999999999999999988887577777777887664
No 226
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00037 Score=67.18 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH-HHhcCC------C--HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-------
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFA-IALCGN------N--AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------- 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~------~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 241 (433)
+.+.+..++.++..|+|.+|.+.+... +...|. . ...|+++|.+++++|.|.-+..+|.+|++-
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 778889999999999999999988653 222332 2 345789999999999999999999999961
Q ss_pred --CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 242 --DP---------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 242 --~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.| ...++.|+.|..|...|+.-.|.+ +|.++....-.+|..|..++.|+....+
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Afq-Cf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQ-CFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 22 246889999999999999999999 9999999999999999999999875433
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.60 E-value=0.0011 Score=66.48 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=91.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 222 (433)
..+.+.|.+++....+.+|+. ....+..|+++...|+.++|++.|++++.....- .-+++.+|+++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s----------~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNS----------ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCH 315 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHH
Confidence 457788888888888888876 7778888889999999999999999887533222 35688889999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhh
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNY-SKAYSRLGLAYYAQGNY-------NDAIEKGFKKALQL 276 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~~~al~~ 276 (433)
.-+.+|++|..++.+..+.+.-. ....|..|.|+...++. ++|.. .|.++-.+
T Consensus 316 ~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~-l~~~vp~l 376 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEE-LFRKVPKL 376 (468)
T ss_pred HHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHH-HHHHHHHH
Confidence 99999999999998888875443 34455578888888888 77777 77766544
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.59 E-value=0.0045 Score=58.39 Aligned_cols=225 Identities=11% Similarity=0.024 Sum_probs=149.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH--HHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA--AYT 223 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~ 223 (433)
..||-..|....+++-.+...++ .+-++..-++...-.|+++.|.+.|+..+. +|+. ..+-.+|. --.
T Consensus 96 gAGda~lARkmt~~~~~llssDq--------epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAq 165 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQ--------EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQ 165 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccc--------hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHH
Confidence 35888888888888765544331 255667777888889999999999987664 4533 22222222 234
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH------------------------------------
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE------------------------------------ 267 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~------------------------------------ 267 (433)
..|..+.|..+...+-...|.-++++...=...+..|+|+.|++
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 67888999999999999999998888888888888899988887
Q ss_pred ----HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC-CccchhhhhhhcCCCCCCCCCcc-----cccCC
Q 013948 268 ----KGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS-SHYSQESNQSTGGFRSHGTPPSF-----TMPFN 337 (433)
Q Consensus 268 ----~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~-----al~~~ 337 (433)
+.-.+++++.|+...+-.--+..+...|+..++-...+.+-+ .|.......|.....=+.++.-+ .-.+.
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence 123344555666666666666777777776666665554432 22233344444443323333333 34456
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCccccccc
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIRIGGNI 386 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 386 (433)
| ++.+..+..+ ..-..-|++..|...-+.+....|.-.++..+
T Consensus 326 ~-----nnaes~~~va-~aAlda~e~~~ARa~Aeaa~r~~pres~~lLl 368 (531)
T COG3898 326 P-----NNAESSLAVA-EAALDAGEFSAARAKAEAAAREAPRESAYLLL 368 (531)
T ss_pred c-----cchHHHHHHH-HHHHhccchHHHHHHHHHHhhhCchhhHHHHH
Confidence 6 7888888888 77777888888888888888888876444433
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.0032 Score=52.57 Aligned_cols=95 Identities=24% Similarity=0.278 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHhhcHHHHHHHHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----------------------AVYYSNRAAAYTQIHQYAEAVRDCLK 237 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~ 237 (433)
.+...|......++...++..+.+++.+...+ ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34444556667778888888888888764221 23566677788889999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 238 SIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 238 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
++..+|-+..+|..+-.++...|++.+|+. .|++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~-~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALR-VYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHH-HHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999 8887653
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.56 E-value=0.0021 Score=62.67 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=90.0
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC-----------------------
Q 013948 187 RVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP----------------------- 243 (433)
Q Consensus 187 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----------------------- 243 (433)
...+..+...-++.-.+|++++|+++.+|..||.= ......+|...|+++++...
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd 254 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD 254 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence 33466788889999999999999999999887652 22235666666666665421
Q ss_pred C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 244 N--YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 244 ~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
. ...+..++|.|..++|+.++|++ .++..++..|. +..++.+|..++..++.+.++.....
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk-~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIK-MFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHH-HHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 14566779999999999999999 99999988775 56689999999999999988877654
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.52 E-value=0.001 Score=62.26 Aligned_cols=126 Identities=10% Similarity=-0.007 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI-HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
+|..+.+...+.+..+.|..+|.+|++..+-...+|...|.+.+.. ++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5666677777788899999999999966666789999999998885 555669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhcccccc
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
.++.+.|.. .|++++..-|... .+|.....--...|+.+........
T Consensus 83 ~~d~~~aR~-lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 83 LNDINNARA-LFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp TT-HHHHHH-HHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred hCcHHHHHH-HHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999 9999998877655 4666666555666766655555443
No 232
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.0099 Score=51.01 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc-HHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY-SKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 253 (433)
..+...++..+...+++++|+..++.++....+. ..+-.++|.+...+|.+++|+..+...-. +.. +..-...|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 4456678889999999999999999999754433 45678899999999999999998876533 222 23355689
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
.++...|+-++|.. .|++++...+..
T Consensus 167 Dill~kg~k~~Ar~-ay~kAl~~~~s~ 192 (207)
T COG2976 167 DILLAKGDKQEARA-AYEKALESDASP 192 (207)
T ss_pred hHHHHcCchHHHHH-HHHHHHHccCCh
Confidence 99999999999999 999999987543
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.39 E-value=0.003 Score=63.43 Aligned_cols=153 Identities=14% Similarity=0.102 Sum_probs=110.6
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH-H--H--HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNR-V--M--QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~-~--~--~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
||-+.++..+.++.+. +.-. . .--...-..+..+.. + . .....+.|.+.+.......|+.+-..+..|.++
T Consensus 202 gdR~~GL~~L~~~~~~-~~i~--~-~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 202 GDRELGLRLLWEASKS-ENIR--S-PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE 277 (468)
T ss_pred CcHHHHHHHHHHHhcc-CCcc--h-HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 8888888888887662 1110 0 000001111111111 1 1 355788999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPN----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK-ENIRMAEQKLREE 297 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~ 297 (433)
...|+.++|++.|++++..... ..-+++.+|.++..+++|++|.. ++.+.++.+.-....+ +..|.|+..+++.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~-~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE-YFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH-HHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999864433 35678889999999999999999 9999998766544443 4457788888887
Q ss_pred -------HHhccccc
Q 013948 298 -------RQRTGWDQ 305 (433)
Q Consensus 298 -------~~a~~~~~ 305 (433)
++|...+.
T Consensus 357 ~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 357 EEAKEHKKEAEELFR 371 (468)
T ss_pred hhhhhhHHHHHHHHH
Confidence 55555544
No 234
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.38 E-value=0.00031 Score=42.47 Aligned_cols=29 Identities=31% Similarity=0.592 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
|+.+|.++..+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33333333333333333333333333333
No 235
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.36 E-value=0.0036 Score=52.27 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHHHHHhhccccc-----c-------chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHA-----Y-------NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~-----~-------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
++.+.++..+++++.+....--.. + -......+...++..+...|++++|+..+++++..+|.+..+|
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~ 99 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAY 99 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 677888888888888764331111 0 0122345566677888899999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
..+-.+|...|++.+|+..|+++.+.
T Consensus 100 ~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 100 RLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999988654
No 236
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0061 Score=54.55 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYS-DAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++.+-++++.+.+..+|++ ..+|...-.+....|++. .-+++...++..+..+..+|..+-+|...-+
T Consensus 92 ~dL~~El~~l~eI~e~npKN----------YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~ 161 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKN----------YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFK 161 (318)
T ss_pred HHHHHHHHHHHHHHHhCccc----------hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHh
Confidence 36778888999999999988 888888888888888888 8889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ-G-----NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-----~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
.|+.-+.+....|+.+-.|-.+|...-.+.... | ..+.-+. +..+.+.+.|++..+|..|.-++..
T Consensus 162 ~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~-yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 162 DYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELN-YTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHH-HHHHHHHhCCCCccHHHHHHHHHHh
Confidence 999999999999999988777777654443332 2 2344566 7788899999999999999877654
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0026 Score=58.84 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=90.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cCCC---HHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-CGNN---AVYYSNRAAA 221 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~ 221 (433)
..|++-+|-....+.|+.+|.+ .-++..--..++..|+...-...+++.+-. +|+- ..+.-.++.+
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtD----------lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTD----------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred ccccccHHHHHHHHHHHhCchh----------hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 3578888888999999999987 566666667777788888888888888776 5554 3444556777
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKK 272 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 272 (433)
+..+|-|++|.+..+++++++|.+..+...++.++...|++.++.+ ...+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e-FM~~ 234 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE-FMYK 234 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH-HHHh
Confidence 8888888888888888888888888888888888888888888887 4443
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.01 Score=54.25 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=96.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRA--AAYTQ 224 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~ 224 (433)
.|++.+|...|..+++..|++ ..+...++.++...|+.+.|...+...=... .+....-..+ ..+.+
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPEN----------SEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQ 215 (304)
T ss_pred ccchhhHHHHHHHHHHhCccc----------chHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHH
Confidence 588999999999999998887 7888899999999999988887776521111 1111111112 22333
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHH
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--NNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~ 296 (433)
.....+ ...+.+.+..+|++..+-+.+|..+...|+.++|.+ .+-..++.+- .+..+...+-.+....|.
T Consensus 216 aa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale-~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 216 AAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALE-HLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333222 345677788899999999999999999999999999 8888887654 356666666666665553
No 239
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.002 Score=65.90 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHH----------HHhcC----------CCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFA----------IALCG----------NNAVYYSNRAAAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~ 236 (433)
.-..|+..+..+...++.+.|+++|+++ +.-+| .+..+|-..|.-+...|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 3567889999999999999999999886 22233 345678888999999999999999998
Q ss_pred HHHhc---------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------hCCCC--HHHHHHH
Q 013948 237 KSIDI---------------------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ------LDPNN--EAVKENI 287 (433)
Q Consensus 237 ~al~~---------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~------~~p~~--~~~~~~l 287 (433)
.|-.. ...+-.+.|.+|..|...|++.+|+. .|.+|-. +...+ .+-+.++
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~-FfTrAqafsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK-FFTRAQAFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77432 23466788999999999999999998 7776543 32221 1112222
Q ss_pred HHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc------------cccCCCCCCCccHHHHHHHHhhc
Q 013948 288 RMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF------------TMPFNTNALPTDIASMLMNMASN 355 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~------------al~~~p~~~~~~~~~a~~~la~~ 355 (433)
+..- ...+...|..+++... ........+|-+.|.+.+|++.- +-.++|+ .++......+ .
T Consensus 1016 al~s-~~~d~v~aArYyEe~g-~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~----sDp~ll~Rca-d 1088 (1416)
T KOG3617|consen 1016 ALMS-GGSDLVSAARYYEELG-GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG----SDPKLLRRCA-D 1088 (1416)
T ss_pred Hhhc-CchhHHHHHHHHHHcc-hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC----CCHHHHHHHH-H
Confidence 2111 1111222333333211 01112234566777777776542 4455663 3445555555 8
Q ss_pred ccccCCChhhHHHHH
Q 013948 356 MPQAQPSQSRQGEDS 370 (433)
Q Consensus 356 ~~~~~g~~~~A~~~~ 370 (433)
.+....+|++|...+
T Consensus 1089 FF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLL 1103 (1416)
T ss_pred HHHhHHHHHHHHHHH
Confidence 888888899887543
No 240
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.002 Score=66.00 Aligned_cols=31 Identities=6% Similarity=-0.062 Sum_probs=26.3
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
.+..+-+.+| +.|...|++.+|+..|.+|-.
T Consensus 965 gd~AAcYhla-R~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 965 GDKAACYHLA-RMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ccHHHHHHHH-HHhhhhHHHHHHHHHHHHHHH
Confidence 6667888899 999999999999998888643
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.23 E-value=0.012 Score=56.45 Aligned_cols=181 Identities=13% Similarity=0.019 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH---hhcHHHHHHHHHH-HHhcCCCcHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIAL----CGNNAVYYSNRAAAYTQ---IHQYAEAVRDCLK-SIDIDPNYSKAY 249 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~ 249 (433)
++....+=..|...++|+.-+...+..-.+ -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455566666788899999888888765554 34457788899999999 9999999999999 555667889999
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhh
Q 013948 250 SRLGLAYYAQ---------GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQST 320 (433)
Q Consensus 250 ~~lg~~~~~~---------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 320 (433)
..+|.+|... ...++|+. +|.++.+++|+ .-.-.|++.++...|.........++... .......
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~-~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~----~l~~llg 294 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIE-WYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGV----KLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHH-HHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHH----HHHHHHH
Confidence 9999999753 35789999 99999999964 33444555555555542221111110000 0001111
Q ss_pred cCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 321 GGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 321 ~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..| .++... +.+..-..+ .+..-.|++++|..++++++.+.|..
T Consensus 295 ~kg---------~~~~~~-----dYWd~ATl~--Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 295 RKG---------SLEKMQ-----DYWDVATLL--EASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred hhc---------cccccc-----cHHHHHHHH--HHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 111 122223 444433333 34455799999999999999999886
No 242
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0012 Score=60.78 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=81.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.++|..|+..|.++|...-.+ +.-.+-.|.+++-+.+..|+|..|+.-..+++.++|.+..+++.-|.|++.++
T Consensus 94 ~Kryk~A~~~Yt~Glk~kc~D------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 94 EKRYKDAVESYTEGLKKKCAD------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hhhHHHHHHHHHHHHhhcCCC------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 589999999999999975443 22346778899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCc
Q 013948 227 QYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~ 245 (433)
++++|..+++..+.++-+.
T Consensus 168 ~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHHHHHHhhhhhhhHHH
Confidence 9999999999987775443
No 243
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.20 E-value=0.00085 Score=40.47 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGN 210 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 210 (433)
.+|+.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57999999999999999999999999999985
No 244
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.19 E-value=0.00011 Score=67.78 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=82.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|.+++|++.|..+|.++|.. +..+..++.++...++...|++.+..++.++|+...-|-.+|.+...+|
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~----------a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPL----------AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred CcchhhhhcccccccccCCch----------hhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 588999999999999998887 8889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCC
Q 013948 227 QYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p 243 (433)
+|++|...+..+++++-
T Consensus 197 ~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDY 213 (377)
T ss_pred chHHHHHHHHHHHhccc
Confidence 99999999999999863
No 245
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.11 E-value=0.0016 Score=64.22 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=95.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 013948 185 GNRVMQSQQYSDAIELYSFAIALCGNN-AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 185 g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 263 (433)
|..+...|+...|+.++..|+...|.. .....++|.++.+.|-.-.|-..+.+++.++-.-+-.++.+|.++..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 344456799999999999999988865 3567899999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 264 DAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 264 ~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
.|++ .|++|++++|+++.....|-.+..
T Consensus 694 ~a~~-~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALE-AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHH-HHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999 999999999999998888776655
No 246
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.08 E-value=0.03 Score=53.04 Aligned_cols=208 Identities=12% Similarity=0.056 Sum_probs=138.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---cCCC-----HHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL---CGNN-----AVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~-----~~~~~~l 218 (433)
.|+.+.|+.+...+-..-|.- .+++...-......|+|+.|++..+..... .++. ..++...
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l----------~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQL----------PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred cccHHHHHHHHHHHHhhccCC----------chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 488888888888888877765 666666666677889999999888765543 2222 1223333
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
+..... .+...|.....+++++.|+...+-..-+..+++.|+..++-. .++.+-+..|. +.++..+- +.+-|+..
T Consensus 237 A~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~-ilE~aWK~ePH-P~ia~lY~--~ar~gdta 311 (531)
T COG3898 237 AMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK-ILETAWKAEPH-PDIALLYV--RARSGDTA 311 (531)
T ss_pred HHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh-HHHHHHhcCCC-hHHHHHHH--HhcCCCcH
Confidence 333222 367888889999999999999999999999999999999999 99999998884 33332221 22222211
Q ss_pred Hh--cccccccCCCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccc-ccCCChhhHHH
Q 013948 299 QR--TGWDQTTSSSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMP-QAQPSQSRQGE 368 (433)
Q Consensus 299 ~a--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~-~~~g~~~~A~~ 368 (433)
.. .....-....+.+.+ ...-+..|+|..|...- +....| ...+|..|+ .+- .+.|+..+...
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p------res~~lLlA-dIeeAetGDqg~vR~ 384 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP------RESAYLLLA-DIEEAETGDQGKVRQ 384 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc------hhhHHHHHH-HHHhhccCchHHHHH
Confidence 11 111111112233333 23345668888877776 666777 345677777 654 45599999999
Q ss_pred HHhhhcCC
Q 013948 369 DSNVSGSD 376 (433)
Q Consensus 369 ~~~~al~l 376 (433)
+..+++.-
T Consensus 385 wlAqav~A 392 (531)
T COG3898 385 WLAQAVKA 392 (531)
T ss_pred HHHHHhcC
Confidence 99999764
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.98 E-value=0.052 Score=52.18 Aligned_cols=155 Identities=10% Similarity=0.011 Sum_probs=95.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHhcCCCHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ---SQQYSDAIELYSFA-IALCGNNAVYYSNRAAA 221 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~a-l~~~p~~~~~~~~la~~ 221 (433)
+..+|+.=+.+.+..-.. |.. .-.....+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.+..+|.+
T Consensus 153 diqdydamI~Lve~l~~~-p~~-----~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEAL-PTC-----DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred hhhhHHHHHHHHHHhhcc-Ccc-----chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 467777777666554333 222 112235667778888887 89999999999994 45566788999999998
Q ss_pred HHH---------hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hh-------C----CCC
Q 013948 222 YTQ---------IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL-QL-------D----PNN 280 (433)
Q Consensus 222 ~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al-~~-------~----p~~ 280 (433)
|-. ....++|+..|.++.+++|+. ..-.+++.++...|.-.+... -+++.. ++ . -.+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~-el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSE-ELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchH-HHHHHHHHHHHHHHhhcccccccc
Confidence 843 224789999999999999643 344555556655554333222 122211 11 0 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 281 EAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
-...-.+..+....|+++++..+.+++.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2223334555556677777777666654
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.011 Score=54.02 Aligned_cols=125 Identities=8% Similarity=-0.020 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH--HH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG--LA 255 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg--~~ 255 (433)
...-+..+.-....|++.+|...|..++...|++..+...++.||...|+.+.|...+...-.-..+... ....+ ..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~-~~l~a~i~l 212 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAA-HGLQAQIEL 212 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHH-HHHHHHHHH
Confidence 3445556777889999999999999999999999999999999999999999998877764333222211 11112 23
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
+.+.....+.. .+++.+..+|++.++.+.++..+...|+.+.|.....
T Consensus 213 l~qaa~~~~~~--~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 213 LEQAAATPEIQ--DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL 260 (304)
T ss_pred HHHHhcCCCHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444333 3677788899999999999999999999999887754
No 249
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.94 E-value=0.016 Score=45.11 Aligned_cols=92 Identities=12% Similarity=0.219 Sum_probs=73.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhc-----------HHHHHHHHHHHHhcCCCcHHHH
Q 013948 184 QGNRVMQSQQYSDAIELYSFAIALCGNNA---VYYSNRAAAYTQIHQ-----------YAEAVRDCLKSIDIDPNYSKAY 249 (433)
Q Consensus 184 lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 249 (433)
++..++..|++-+|++..+..+..++++. ..+...|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678899999999999999999988876 556667888766553 3458888888899999888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 250 SRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 250 ~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+.+|.-+.....|+++.. -.+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~-kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVK-KAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHH-HHHHHhcc
Confidence 888887777777888887 77777765
No 250
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.91 E-value=0.13 Score=52.70 Aligned_cols=230 Identities=14% Similarity=0.067 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHH------HHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 120 KDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDA------INEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a------l~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
..++++++..++.+-..|...++......++++|+++|++. +++..-. .+......--..|..+...|+
T Consensus 647 de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 647 DEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred cHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHh
Confidence 34556677777777677777777777788899999887753 3332111 011112223345677778888
Q ss_pred HHHHHHHHHHHHHhc------------C-------------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHH
Q 013948 194 YSDAIELYSFAIALC------------G-------------NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKA 248 (433)
Q Consensus 194 ~~~A~~~~~~al~~~------------p-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 248 (433)
++.|+.+|-.+-.+- | .-...|-..+.-|...|+|+-|.+.|.++=..+
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~------ 795 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFK------ 795 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhH------
Confidence 888888876542110 0 001123334444444555555554444331110
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCC
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE-AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHG 327 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (433)
.--.+|.+.|+|++|.. .-.+.. .|... ..+...+.-....|++.+|...+.....+ +.....|-+-|.++.
T Consensus 796 --dai~my~k~~kw~da~k-la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p--~~aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 796 --DAIDMYGKAGKWEDAFK-LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEP--DKAIQMYDKHGLDDD 868 (1636)
T ss_pred --HHHHHHhccccHHHHHH-HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCc--hHHHHHHHhhCcchH
Confidence 11123444555555544 333322 12221 22223333344455555555544432211 112223333333332
Q ss_pred CCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 328 TPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 328 A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.+... -...| ......+..+| .-+...|+...|.+.|-++
T Consensus 869 mirlv-~k~h~----d~l~dt~~~f~-~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 869 MIRLV-EKHHG----DHLHDTHKHFA-KELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHH-HHhCh----hhhhHHHHHHH-HHHHhccChhHHHHHHHhh
Confidence 22211 11122 23344667777 7788889999998888665
No 251
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.91 E-value=0.0082 Score=40.31 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 248 AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 248 ~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.++.+|..++++|+|++|.. +.+.+|+++|++..+......+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~-~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARR-YCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHH-HHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHH-HHHHHHhhCCCcHHHHHHHHHHH
Confidence 45666777777777777777 77777777777766655554443
No 252
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.86 E-value=0.0024 Score=37.99 Aligned_cols=29 Identities=24% Similarity=0.317 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34444444444444444444444444444
No 253
>PRK10941 hypothetical protein; Provisional
Probab=96.84 E-value=0.015 Score=53.65 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
...++=.+|.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|.. .++..++..|+++.+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~-DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALS-DLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHhCCCchhHHH
Confidence 344555566666666666666666666666666666666666666666666666 66666666666665443
No 254
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.81 E-value=0.0059 Score=59.73 Aligned_cols=102 Identities=29% Similarity=0.315 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH---QYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
.+-+..-|+-.+..+.+..|+..|.+++...|....++.+++.++++.+ +.-.|+..+..+++++|....+|+.|+.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 4555556666666778899999999999999999999999999998754 6778999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
++..++++.+|+. +...+....|.+
T Consensus 454 aL~el~r~~eal~-~~~alq~~~Ptd 478 (758)
T KOG1310|consen 454 ALNELTRYLEALS-CHWALQMSFPTD 478 (758)
T ss_pred HHHHHhhHHHhhh-hHHHHhhcCchh
Confidence 9999999999999 766666666643
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.80 E-value=0.032 Score=46.65 Aligned_cols=105 Identities=13% Similarity=0.006 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...+.....+-...++.+++...+...-.+.|+.+..-..-|+++...|+|.+|+..++.+....|..+.+--.++.|++
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 55677777777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
.+|+.+== . +-.++++..+ ++.+..
T Consensus 90 ~~~D~~Wr-~-~A~evle~~~-d~~a~~ 114 (160)
T PF09613_consen 90 ALGDPSWR-R-YADEVLESGA-DPDARA 114 (160)
T ss_pred HcCChHHH-H-HHHHHHhcCC-ChHHHH
Confidence 99986421 1 3344555444 444433
No 256
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.78 E-value=0.0015 Score=63.12 Aligned_cols=82 Identities=13% Similarity=0.014 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------cC---------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIAL---------CG---------NNAVYYSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
.-.|.++|.+++..+.|.-++.+|.+|++. .| ....+.|+.|..|...|++-.|.++|.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 345789999999999999999999999961 11 235789999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHc
Q 013948 240 DIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 240 ~~~p~~~~~~~~lg~~~~~~ 259 (433)
.....+|..|++++.|+...
T Consensus 363 ~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999998753
No 257
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.056 Score=46.52 Aligned_cols=117 Identities=10% Similarity=0.008 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHhccc
Q 013948 230 EAVRDCLKSIDIDPNYS---KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN---EAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 230 ~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
+......+...-+|... -+-+.++..+...+++++|+. .++.++....+. .-+-.+|+++....|++++|...
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~a-qL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEA-QLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHH-HHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44455555555565553 345568899999999999999 999998654332 34567889999999999988776
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
... +..+. -.+.....+| .++...|+.++|+..|+++++.+++.
T Consensus 149 L~t---------------------------~~~~~-----w~~~~~elrG-Dill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 149 LDT---------------------------IKEES-----WAAIVAELRG-DILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred Hhc---------------------------ccccc-----HHHHHHHHhh-hHHHHcCchHHHHHHHHHHHHccCCh
Confidence 551 11121 2334456678 99999999999999999999987664
No 258
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.74 E-value=0.0067 Score=55.50 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=66.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
-...+.-....|+.++|...|..|+.+.|++++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+...
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 3344555678899999999999999999999999999999999999999999999999999999999988876543
No 259
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.079 Score=47.68 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..-..|+.+...+|.++|.+ ..+|...-.++... .+..+-++.+.+.+..+|.+..+|..+-.+....|
T Consensus 57 E~S~RAl~LT~d~i~lNpAn----------YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPAN----------YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG 126 (318)
T ss_pred ccCHHHHHHHHHHHHhCccc----------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence 35567788888888887776 66666666665443 45677778888888888888888888888888888
Q ss_pred cHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 227 QYA-EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 227 ~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
++. .-++..+.++..+..+-.+|...-.+....+.|+.-+. +..+.|+.+-.+-.+|..
T Consensus 127 d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~-y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 127 DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA-YADELLEEDIRNNSAWNQ 186 (318)
T ss_pred CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH-HHHHHHHHhhhccchhhe
Confidence 777 77888888888888888888888888888888888888 778888777666666654
No 260
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.62 E-value=0.0042 Score=36.91 Aligned_cols=33 Identities=36% Similarity=0.703 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 247 ~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
++++.+|.++...|++++|+. .|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~-~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIE-YFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHH-HHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHH-HHHHHHHHCcCC
Confidence 478999999999999999999 999999999974
No 261
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.61 E-value=0.011 Score=58.45 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=91.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|+...|++++..|+-..|... .-....+++++...|-...|-.++.+++.++...+-.++.+|.+++.+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~---------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQ---------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhh---------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 45899999999999999877652 345778899999999999999999999999988899999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
.+.+.|++.++.|++++|+++.+-..|-.+-+
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999988777666555
No 262
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.61 E-value=0.036 Score=54.14 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 013948 195 SDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN-YNDAIEKGFKKA 273 (433)
Q Consensus 195 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~a 273 (433)
..-...|+.|+...+.|+.+|.....-..+.+.+.+--..|.+++..+|+++..|..-|.-.+.-+. .+.|.. .|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRa-lflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARA-LFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHH-HHHHH
Confidence 4456788999999999999999988777777779999999999999999999999999998888776 888888 99999
Q ss_pred HhhCCCCHHHHHHHHHH
Q 013948 274 LQLDPNNEAVKENIRMA 290 (433)
Q Consensus 274 l~~~p~~~~~~~~l~~~ 290 (433)
|+.+|+++..|...-+.
T Consensus 167 LR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRM 183 (568)
T ss_pred hhcCCCChHHHHHHHHH
Confidence 99999999888765443
No 263
>PRK10941 hypothetical protein; Provisional
Probab=96.60 E-value=0.028 Score=51.84 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.....++-.++...++++.|+.+.+..+.+.|+++.-+-.+|.+|.++|.+..|...++..++..|+++.+-.....+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4456667778899999999999999999999999999999999999999999999999999999999998776655544
No 264
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.60 E-value=0.011 Score=54.14 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=66.3
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
+.|.-..+.|+.++|...|+.|+.++|+++.++..+|......++.-+|-. +|-+||.++|.+.+++.+..+..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq-~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQ-CYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhh-hhheeeeeCCCchHHHhhhhccc
Confidence 344445678999999999999999999999999999999999999999999 99999999999999888776553
No 265
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.57 E-value=0.07 Score=43.01 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHHhh---cHHHHHHHHHHHHh-cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 211 NAVYYSNRAAAYTQIH---QYAEAVRDCLKSID-IDPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
.....+++|+++.+.. +..+.+.+++..++ -.|+ .-+..+.|+..+++.++|+.++. +....++..|++.++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~-yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLR-YVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHH-HHHHHHhhCCCcHHHHH
Confidence 4577889999998765 45778889999986 4454 45788889999999999999999 99999999999998876
Q ss_pred HHHHHHHHH
Q 013948 286 NIRMAEQKL 294 (433)
Q Consensus 286 ~l~~~~~~~ 294 (433)
.--.+.-++
T Consensus 110 Lk~~ied~i 118 (149)
T KOG3364|consen 110 LKETIEDKI 118 (149)
T ss_pred HHHHHHHHH
Confidence 655554443
No 266
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.55 E-value=0.063 Score=42.17 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=74.1
Q ss_pred HHHHHHHHH--HHHHccCHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc--
Q 013948 178 AEIFKCQGN--RVMQSQQYSDAIELYSFAIALCGN------------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-- 241 (433)
Q Consensus 178 ~~~~~~lg~--~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 241 (433)
+.+|..|+. -.+..|-|++|...+.+|++.... ++-++-.|+.++..+|+|++++....++|..
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 455655554 456779999999999999987533 2557888999999999999998888888754
Q ss_pred -----CCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 242 -----DPNY----SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 242 -----~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+.+. ..+.+..|..+..+|+.++|+. .|+.+-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~-~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALK-EFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHH-HHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHH
Confidence 4443 3455678999999999999999 99987653
No 267
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.52 E-value=0.095 Score=50.03 Aligned_cols=164 Identities=5% Similarity=-0.073 Sum_probs=104.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 199 ELYSFAIALCGNNAVYYSNRAAAYTQIHQ------------YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 199 ~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
.-|++.++.+|.|..+|..+....-..-. .+.-+..|++|++.+|++...+..+=.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888889998888888765544322 456778888999999988888888877888888888878
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH-HHH--HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCc
Q 013948 267 EKGFKKALQLDPNNEAVKENIRMAEQK-LRE--ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPT 343 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~ 343 (433)
. -+++++..+|++..+|..+-..... ... .......+..+....... ..+. ..-..++.....
T Consensus 86 ~-~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~------~~~~-------~~~~~~~~~~e~ 151 (321)
T PF08424_consen 86 K-KWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR------RSGR-------MTSHPDLPELEE 151 (321)
T ss_pred H-HHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh------hccc-------cccccchhhHHH
Confidence 7 8899999899888877665433222 111 222222222111000000 0000 000001111112
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
.....+..+. ..+.+.|-.+.|+..++..++++
T Consensus 152 ~~l~v~~r~~-~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 152 FMLYVFLRLC-RFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHH-HHHHHCCchHHHHHHHHHHHHHH
Confidence 5666777888 88999999999999999998874
No 268
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.51 E-value=0.034 Score=42.11 Aligned_cols=64 Identities=23% Similarity=0.184 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCC
Q 013948 198 IELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY--SKAYSRLGLAYYAQGN 261 (433)
Q Consensus 198 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~ 261 (433)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+.-.+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 456677777777777777777777777777777777777777777655 3333333334444443
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.51 E-value=0.0066 Score=37.19 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=12.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFA 204 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~a 204 (433)
+..+|.++...|+|++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
No 270
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.50 E-value=0.014 Score=39.21 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
++++.+|..+.++|+|++|..+++.++++.|+|..+.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 35666777777777777777777777777777766554433
No 271
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.45 E-value=0.15 Score=47.81 Aligned_cols=130 Identities=20% Similarity=0.119 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----SQQYSDAIELYSFAIALCGNN-AVYYSNRAAAY 222 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 222 (433)
.+..+|..+|+.+... ..+.+.+.+|..+.. ..++.+|...|.+|....-.. ..+.+.+|.+|
T Consensus 91 ~~~~~A~~~~~~~a~~------------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~ 158 (292)
T COG0790 91 RDKTKAADWYRCAAAD------------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAY 158 (292)
T ss_pred ccHHHHHHHHHHHhhc------------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 5688888888854442 126678889988876 458999999999998875333 34488888888
Q ss_pred HHhh-------cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 223 TQIH-------QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 223 ~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
..-. +...|+..|.++.... ++.+.+.+|.+|.. ..++.+|.. +|.++.+... ....+.++ ++
T Consensus 159 ~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~-wy~~Aa~~g~--~~a~~~~~-~~ 232 (292)
T COG0790 159 LSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFR-WYKKAAEQGD--GAACYNLG-LM 232 (292)
T ss_pred HcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHH-HHHHHHHCCC--HHHHHHHH-HH
Confidence 7641 3347899999888876 88899999988866 348899999 9999998776 77778888 55
Q ss_pred HHHH
Q 013948 292 QKLR 295 (433)
Q Consensus 292 ~~~~ 295 (433)
...|
T Consensus 233 ~~~g 236 (292)
T COG0790 233 YLNG 236 (292)
T ss_pred HhcC
Confidence 5444
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.41 E-value=0.0061 Score=37.36 Aligned_cols=25 Identities=44% Similarity=0.740 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
|..||.+|..+|+|++|+. +|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~-~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIE-YYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHH-HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 4556666666666666666 666644
No 273
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.37 E-value=0.0065 Score=35.12 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
++.+|.++...+++++|+..++++++++|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444433
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.32 E-value=0.38 Score=44.93 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=97.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhc----CCC---------
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-QYSDAIELYSFAIALC----GNN--------- 211 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~----p~~--------- 211 (433)
..|+++.|..++.|+-...+. ..+..-...+..+++.|......+ +++.|+..++++.++- +.+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~--~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNS--LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhc--CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 369999999999999877631 112223556889999999999999 9999999999999883 111
Q ss_pred -HHHHHHHHHHHHHhhcHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 212 -AVYYSNRAAAYTQIHQYA---EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 212 -~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
..++..++.+|...+.++ +|....+.+-.-.|+.+..+...=.++...++.+++.+ .+.+.+..-+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~-~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEE-ILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHH-HHHHHHHhcc
Confidence 356778899999888654 45555566666678888777555555555888999988 8888887544
No 275
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.034 Score=58.64 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+..|..+|......|...+|++.|-+| +++..|...-.+..+.|.|++-+.++..+-+.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 778999999999999999999999875 57778888888888999999988888777554
No 276
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.22 E-value=0.11 Score=49.77 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------------C-----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGN-------------N-----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------------~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+-..-|..++++++|..|..-|..++++..+ + ..+-..+..||+.+++.+.|+....+.|-+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 3334455667778888888888888776432 1 234667899999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHH
Q 013948 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL---QLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 242 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al---~~~p~~~~~~~~l~~~~~ 292 (433)
+|.+...++..|.|+..+.+|.+|.. .+.-+. -++..+..-...+-..|+
T Consensus 258 nP~~frnHLrqAavfR~LeRy~eAar-Samia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSEAAR-SAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 99999999999999999999999988 655543 344444444333444443
No 277
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.22 E-value=0.045 Score=53.49 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-HHH
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ-YAE 230 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~ 230 (433)
.-..+|+.|+..++.+ ...|........+.+.+.+--..|.+++..+|+++.+|..-|.-.+..+. .+.
T Consensus 89 rIv~lyr~at~rf~~D----------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s 158 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGD----------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES 158 (568)
T ss_pred HHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence 3456789999988876 77888877777777889999999999999999999999999988888776 899
Q ss_pred HHHHHHHHHhcCCCcHHHHHH
Q 013948 231 AVRDCLKSIDIDPNYSKAYSR 251 (433)
Q Consensus 231 A~~~~~~al~~~p~~~~~~~~ 251 (433)
|...+.++|+.+|+++..|..
T Consensus 159 aRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 159 ARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHHHHhhcCCCChHHHHH
Confidence 999999999999999987764
No 278
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.16 E-value=0.0089 Score=34.52 Aligned_cols=33 Identities=52% Similarity=0.864 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 247 ~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
.+++.+|.++...+++++|+. +++++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~-~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALE-YYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHH-HHHHHHccCCCC
Confidence 478899999999999999999 999999998863
No 279
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.16 E-value=0.086 Score=47.03 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=68.9
Q ss_pred HccCHHHHHHHHHHHHHh----cCC---CHHHHHHHHHHHHHhhcHHH-------HHHHHHHHHhcCCC------cHHHH
Q 013948 190 QSQQYSDAIELYSFAIAL----CGN---NAVYYSNRAAAYTQIHQYAE-------AVRDCLKSIDIDPN------YSKAY 249 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~~~~~~-------A~~~~~~al~~~p~------~~~~~ 249 (433)
....+++|++.|.-|+-. ... -+.++..+|++|...|+.+. |+..|.++++.... .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345677777777766532 111 25788899999999998554 55555555554322 35788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC-HHHHHHHHH
Q 013948 250 SRLGLAYYAQGNYNDAIEKGFKKALQLDPNN-EAVKENIRM 289 (433)
Q Consensus 250 ~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~-~~~~~~l~~ 289 (433)
+.+|.+.++.|++++|.. +|.+++...... +.....+++
T Consensus 169 YLigeL~rrlg~~~eA~~-~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKR-WFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHhCCHHHHHH-HHHHHHcCCCCCCcHHHHHHHH
Confidence 899999999999999999 999999764333 245555554
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.10 E-value=0.21 Score=48.06 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc--C-C-----
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN----NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI--D-P----- 243 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~-p----- 243 (433)
.....|...+.+..+.|+++.|...+.++...++. .+.+.+..+.+++..|+..+|+..++..+.. . +
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 34788999999999999999999999999876522 5678888999999999999999999888871 1 1
Q ss_pred --------------------------CcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 244 --------------------------NYSKAYSRLGLAYYAQ------GNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 244 --------------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
....+++.+|...... +..++++. .|+++++++|....+|..+|..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILK-YYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHH-HHHHHHHhChhHHHHHHHHHHHH
Confidence 0245666777777777 88889999 99999999999999999999888
Q ss_pred HHHHHHH
Q 013948 292 QKLREER 298 (433)
Q Consensus 292 ~~~~~~~ 298 (433)
..+-...
T Consensus 303 ~~~~~~~ 309 (352)
T PF02259_consen 303 DKLLESD 309 (352)
T ss_pred HHHHHhh
Confidence 7665544
No 281
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.09 E-value=0.61 Score=46.36 Aligned_cols=175 Identities=8% Similarity=-0.037 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc--------------HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcC---
Q 013948 199 ELYSFAIALCGNNAVYYSNRAAAYTQIHQ--------------YAEAVRDCLKSIDIDPN-YSKAYSRLGLAYYAQG--- 260 (433)
Q Consensus 199 ~~~~~al~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g--- 260 (433)
-.|++++..-+-.+.+|+..+.-+...++ -+++..+|++++..--. +.-.++.++.--...-
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 35677777778888888887777776666 68888889888876322 3333333333322222
Q ss_pred CHHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHhcccccccCCCccch----hh---hhhhcCCCCCCCCCcc
Q 013948 261 NYNDAIEKGFKKALQLDPNNEA-VKENIRMAEQKLREERQRTGWDQTTSSSHYSQ----ES---NQSTGGFRSHGTPPSF 332 (433)
Q Consensus 261 ~~~~A~~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~---~~~~~~~~~~~A~~~~ 332 (433)
+++..-. .+++++.+...++. ++..+-..-.+..-...|...+.++....... .. --|.-.++..-|...|
T Consensus 346 ~~~~~~~-~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHE-IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIF 424 (656)
T ss_pred hhhhhHH-HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHH
Confidence 2556666 77777776544433 34444333333333344444444443222111 11 1244457788888888
Q ss_pred --cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC--CCCc
Q 013948 333 --TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD--EPGI 380 (433)
Q Consensus 333 --al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l--~P~~ 380 (433)
.+...+ +.+..-+... ..+..+|+-..|...|++++.. .|+-
T Consensus 425 eLGLkkf~-----d~p~yv~~Yl-dfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 425 ELGLKKFG-----DSPEYVLKYL-DFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HHHHHhcC-----CChHHHHHHH-HHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 888888 8888888888 8888899999999999999876 5443
No 282
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.41 Score=46.88 Aligned_cols=152 Identities=16% Similarity=0.074 Sum_probs=105.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-C--HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-N--AVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~ 223 (433)
.|++.+|+.....+.+.....+.+.......+..++.+|......+-|+.|...|..|++.... + +-+..++|.+|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 3889999888887777655543322233445778889999999999999999999999987543 2 445678899999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNY----------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVKENI 287 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~~~l 287 (433)
..++-+.-.+.++ .+.|.+ ..+++..|...+.++++.+|.. .+.+.++..... ...+..|
T Consensus 416 ~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~-~l~e~Lkmanaed~~rL~a~~LvLL 491 (629)
T KOG2300|consen 416 RIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKR-FLRETLKMANAEDLNRLTACSLVLL 491 (629)
T ss_pred HhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHhhcchhhHHHHHHHHHHHH
Confidence 9877544333333 334442 4577788899999999999999 999999876211 1223344
Q ss_pred HHHHHHHHHHHHhcc
Q 013948 288 RMAEQKLREERQRTG 302 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~ 302 (433)
+.+...+|+..++..
T Consensus 492 s~v~lslgn~~es~n 506 (629)
T KOG2300|consen 492 SHVFLSLGNTVESRN 506 (629)
T ss_pred HHHHHHhcchHHHHh
Confidence 555555555554433
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.99 E-value=0.41 Score=41.35 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--cH---
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN--YS--- 246 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~--- 246 (433)
.....++..+|..|.+.|+++.|++.|.++.+..... .+.++++-.+....+++.....+..++-.+-.. +.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 4446789999999999999999999999988765443 567888888999999999999999998776322 22
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 247 -KAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 247 -~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
.....-|..+...++|.+|.. .|-.++.
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~-~fl~~~~ 141 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAE-LFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHH-HHHccCc
Confidence 233445777888899999998 8776653
No 284
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.99 E-value=0.011 Score=51.98 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=29.2
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 245 (433)
..++.+.|.+.|.+++.+-|+...-|+.+|....+.|+++.|...|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44455555555555555555555555555555555555555555555555555544
No 285
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.97 E-value=0.19 Score=51.84 Aligned_cols=245 Identities=13% Similarity=0.023 Sum_probs=146.9
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-----QYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
...|.+.|+.+++.+........ ....+.+.+.+|.+|.... ++..|+.+|.++-+.. ++.+.+.+|.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a-----~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAA-----TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH-----hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHH
Confidence 35799999999999987211110 0012457888999998743 7889999999998765 6788888999
Q ss_pred HHHHhh---cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 221 AYTQIH---QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ----GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 221 ~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
++..-. ++..|.++|..|... .+..+.+.+|.||..- .+...|.. +++++.+.+ .+.+...++..+..
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~-~~k~aA~~g--~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFA-YYKKAAEKG--NPSAAYLLGAFYEY 408 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHH-HHHHHHHcc--ChhhHHHHHHHHHH
Confidence 998766 578999999999875 5778999999998763 57899999 999999887 45555555544433
Q ss_pred H-HHHHHhccccc--ccCC-CccchhhhhhhcCC-----------CCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc
Q 013948 294 L-REERQRTGWDQ--TTSS-SHYSQESNQSTGGF-----------RSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 294 ~-~~~~~a~~~~~--~~~~-~~~~~~~~~~~~~~-----------~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
. +....+...+. +... .........+...+ +..-+...+.-.... .++.+...+| .+|.
T Consensus 409 g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----g~~~a~~~lg-d~y~ 482 (552)
T KOG1550|consen 409 GVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-----GNADAILKLG-DYYY 482 (552)
T ss_pred ccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-----cCHHHHhhhc-ceee
Confidence 2 33332222211 1110 00000011111111 000011111111222 5567777788 6665
Q ss_pred cC----CChhhHHHHHhhhcCCCCCccccccccccc-ccCCcHHHHHHHHHHHhhcC
Q 013948 359 AQ----PSQSRQGEDSNVSGSDEPGIRIGGNINLNF-GENMPEDITGALRSMMEMFS 410 (433)
Q Consensus 359 ~~----g~~~~A~~~~~~al~l~P~~~~~~~~~~~l-~~~~~~~~~~a~~~~~~~~~ 410 (433)
.- .+++.|...|.++-... -....|+..-. ++...+.+.-+.+.+.....
T Consensus 483 ~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 483 YGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred ecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 43 45889999999987666 33333333222 13333335556666655543
No 286
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.96 E-value=0.055 Score=40.97 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHH
Q 013948 231 AVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--EAVKENIRMAEQKLREE 297 (433)
Q Consensus 231 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~ 297 (433)
.+..+++.+..+|++..+.+.+|..+...|++++|++ .+-.+++.+++. ..+...+-.+...+|..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~-~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALD-QLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH-HHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4678899999999999999999999999999999999 999999998764 67777777777777763
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.92 E-value=0.18 Score=51.91 Aligned_cols=143 Identities=16% Similarity=0.145 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHh-----cCCCHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-----QQYSDAIELYSFAIAL-----CGNNAVYYSNR 218 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~l 218 (433)
+...+..+++.+....- ..+...+|.+++.- ++.+.|+.+|..+... .-..+.+.+.+
T Consensus 227 ~~~~a~~~~~~~a~~g~------------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~l 294 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH------------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGL 294 (552)
T ss_pred hhhHHHHHHHHHHhhcc------------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHH
Confidence 45678888888776522 66788888887643 6899999999999771 11256788899
Q ss_pred HHHHHHhh-----cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 219 AAAYTQIH-----QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG---NYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 219 a~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
|.+|.+.. ++..|+.+|.++-.+ .++.+.+.+|.++.... ++..|.+ +|..|.+. .+..+.+.++.|
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~-yy~~Aa~~--G~~~A~~~la~~ 369 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFE-YYSLAAKA--GHILAIYRLALC 369 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHH-HHHHHHHc--CChHHHHHHHHH
Confidence 99998843 788899999999987 45668899999998766 6789999 99998864 678899999999
Q ss_pred HHHH----HHHHHhcccccccC
Q 013948 291 EQKL----REERQRTGWDQTTS 308 (433)
Q Consensus 291 ~~~~----~~~~~a~~~~~~~~ 308 (433)
+..- .+...|..|+.++.
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHH
Confidence 8743 23566666665544
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.92 E-value=0.15 Score=42.02 Aligned_cols=85 Identities=15% Similarity=-0.035 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
..+......-....+.+++...+...--+.|+.+.+-..-|.++...|+|.+|+..++...+-.+..+.+.-.++.|++-
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34444445555688999999999998889999999999999999999999999999999999998999999999999999
Q ss_pred cCCHH
Q 013948 259 QGNYN 263 (433)
Q Consensus 259 ~g~~~ 263 (433)
+|+.+
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 99854
No 289
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.13 Score=51.81 Aligned_cols=98 Identities=12% Similarity=0.188 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 251 (433)
...+++-|.-+++.++|..+++.|...+..-|.| +...-+++.||..+.+.+.|.++++.|-+.+|.++-....
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 4556677778889999999999999999877665 4567788999999999999999999999999999999998
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 252 LGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 252 lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+-.+....+.-++|+. +..+....
T Consensus 434 ~~~~~~~E~~Se~AL~-~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALT-CLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHH-HHHHHHhh
Confidence 8888889999999998 87766543
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.83 E-value=0.12 Score=43.22 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
...+.....+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+. .|+.+..-.|..+-+.-.++.|+
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~r-lLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALR-LLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHH-HHHHHhccCCCChHHHHHHHHHH
Confidence 34566677777888899999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHH
Q 013948 292 QKLREER 298 (433)
Q Consensus 292 ~~~~~~~ 298 (433)
..+++..
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 8888744
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.75 E-value=0.38 Score=46.30 Aligned_cols=129 Identities=18% Similarity=0.179 Sum_probs=98.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-cC-C-----------
Q 013948 144 NDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-CG-N----------- 210 (433)
Q Consensus 144 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p-~----------- 210 (433)
....|.++.|...+.++....+... ...+...+..+..+...|+..+|+..++..+.. .. .
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~------~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSE------SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKS 229 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCccc------CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhh
Confidence 3357999999999999888654331 112677888899999999999999999888871 11 0
Q ss_pred ---------------------CHHHHHHHHHHHHHh------hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-
Q 013948 211 ---------------------NAVYYSNRAAAYTQI------HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY- 262 (433)
Q Consensus 211 ---------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~- 262 (433)
.+.++..+|...... +..++++..|.++++++|....+|+.+|..+...-+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 230 GLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESD 309 (352)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhh
Confidence 034566777777777 7889999999999999999999999999988765222
Q ss_pred ----------------HHHHHHHHHHHHhhCCC
Q 013948 263 ----------------NDAIEKGFKKALQLDPN 279 (433)
Q Consensus 263 ----------------~~A~~~~~~~al~~~p~ 279 (433)
..|+. .|-+++.+.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~ai~-~y~~al~~~~~ 341 (352)
T PF02259_consen 310 PREKEESSQEDRSEYLEQAIE-GYLKALSLGSK 341 (352)
T ss_pred hhcccccchhHHHHHHHHHHH-HHHHHHhhCCC
Confidence 23677 78888887776
No 292
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.62 E-value=0.3 Score=47.33 Aligned_cols=122 Identities=13% Similarity=0.009 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------cCC------------C---HHHHHHHHHHHHHh
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------------CGN------------N---AVYYSNRAAAYTQI 225 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------------~p~------------~---~~~~~~la~~~~~~ 225 (433)
|...+++..++.++..+|+++.|.+.+++|+-. ++. | ..+.+.....+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 444999999999999999999999999999732 111 1 23566677888899
Q ss_pred hcHHHHHHHHHHHHhcCCC-cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHHHHH
Q 013948 226 HQYAEAVRDCLKSIDIDPN-YSK-AYSRLGLAYYAQGNYNDAIEKGFKKALQLDP-----NNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~-~~~-~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~ 297 (433)
|.+..|+++++-.++++|. +|- +.+.+=....+.++|+--+. .++....... .-|...+.++.++..+++.
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~-~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLID-FSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHH-HHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 9999999999999999999 764 44445555577888887777 6665544211 1345677778888887776
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.56 E-value=2 Score=40.00 Aligned_cols=127 Identities=14% Similarity=0.058 Sum_probs=80.2
Q ss_pred c-hHHHHHHHHHHHHHHHhh---cccc-ccchhhHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHhcCCCHHHHHHHH
Q 013948 148 S-QVDKASRIFHDAINEMEK---SGAH-AYNQKNLAEIFKCQGNRVMQSQQYS---DAIELYSFAIALCGNNAVYYSNRA 219 (433)
Q Consensus 148 g-~~~~A~~~~~~al~~~p~---~~~~-~~~~~~~~~~~~~lg~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la 219 (433)
+ +++.|+.+++++++.... .... +....-...++..++.++...+.++ +|....+.+-...|+.+..+...=
T Consensus 49 ~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l 128 (278)
T PF08631_consen 49 KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKL 128 (278)
T ss_pred CCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 5 899999999999998533 1111 1122345677888999999887654 455555555556787777775555
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCC-CcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDP-NYSKAYSRLGLA-YYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~-~~~~g~~~~A~~~~~~~al~ 275 (433)
.++.+.++.+++.+.+.+.+..-+ .....-..+..+ .........+.. ++...+.
T Consensus 129 ~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~-~ld~~l~ 185 (278)
T PF08631_consen 129 EILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAF-CLDYLLL 185 (278)
T ss_pred HHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHH-HHHHHHH
Confidence 555568899999999999988754 222222222222 122344556666 7766664
No 294
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.41 E-value=0.63 Score=44.43 Aligned_cols=110 Identities=6% Similarity=-0.031 Sum_probs=84.1
Q ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013948 156 IFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ------------QYSDAIELYSFAIALCGNNAVYYSNRAAAYT 223 (433)
Q Consensus 156 ~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 223 (433)
-+++.+..+|.+ ..+|..+....-..- -.+.-+..|++||+.+|++..++..+=.+..
T Consensus 7 el~~~v~~~P~d----------i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~ 76 (321)
T PF08424_consen 7 ELNRRVRENPHD----------IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE 76 (321)
T ss_pred HHHHHHHhCccc----------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 466777777777 778887776543321 2567788999999999999999998888888
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhh
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA---QGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~~al~~ 276 (433)
+..+.++...-+++++..+|.++..|...-..... .-.++.... .|.+++..
T Consensus 77 ~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~-~y~~~l~~ 131 (321)
T PF08424_consen 77 KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRD-VYEKCLRA 131 (321)
T ss_pred HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHH
Confidence 88899999999999999999998888765433322 335677777 77777653
No 295
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.27 Score=49.28 Aligned_cols=129 Identities=16% Similarity=0.031 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHH
Q 013948 153 ASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAV 232 (433)
Q Consensus 153 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 232 (433)
++..+...+..++.+ +...-+.+ +...+...+....+.-.+..++..+|++..++.++|.++...|....++
T Consensus 50 ~~~a~~~~~~~~~~~-------~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 50 AIYALLLGIAINDVN-------PELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred HHHHHHccCccCCCC-------HHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 444444444544443 33333444 6777778899989999999999999999999999999998888776666
Q ss_pred HHHHH-HHhcCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 233 RDCLK-SIDIDPNYSKAYSRL------GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 233 ~~~~~-al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
..+.. +....|++......+ |.....+|+..++.. .+.++..+.|.++.+...+...
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAEL-ALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhhhhhhhhHhHHHHH
Confidence 66655 899999987766665 888888999999999 9999999999987766555544
No 296
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.37 E-value=0.045 Score=50.31 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=77.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 200 LYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR-LGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 200 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
.|.++....|+|+..|...+.-..+.|.|.+--..|.+++..+|.+.+.|.. .+.-+...++++.+.. .|.+++.++|
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra-~f~~glR~N~ 173 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRA-MFLKGLRMNS 173 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHH-HHHhhhccCC
Confidence 4566667789999999999888888999999999999999999999999988 5666888999999999 9999999999
Q ss_pred CCHHHHHHHHH
Q 013948 279 NNEAVKENIRM 289 (433)
Q Consensus 279 ~~~~~~~~l~~ 289 (433)
.+|..|...-+
T Consensus 174 ~~p~iw~eyfr 184 (435)
T COG5191 174 RSPRIWIEYFR 184 (435)
T ss_pred CCchHHHHHHH
Confidence 99988876543
No 297
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.29 E-value=0.028 Score=49.42 Aligned_cols=61 Identities=18% Similarity=0.388 Sum_probs=56.7
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
....+.++.+.|.+.|.+++.+.|++...|+++|....+.|+++.|.. .|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~-a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAA-AYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHH-HHHHHHcCCcccc
Confidence 345678899999999999999999999999999999999999999999 9999999999863
No 298
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=1 Score=44.21 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=106.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchh----hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CC-------CH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQK----NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC---GN-------NA 212 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~-------~~ 212 (433)
.|-+++|.++-.++|....+........+ -....+-.+..|-.-.|++.+|++....+.+.. |. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 48899999999999887544321110111 112234456667778999999999888776653 33 35
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC---------
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--------- 280 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~--------- 280 (433)
.+++.+|.-....+.++.|...|..|.++-.. ...+..++|.+|.+.|+-+.-.+ .++. +.|.+
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~-~ld~---i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYK-ALDL---IGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHH-HHHh---cCCCCCCcchHHHH
Confidence 67888898888899999999999999987433 34566779999999887655444 3333 34442
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 281 -EAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 281 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
..+++..|......+++.+|........
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2344555655666777888877765433
No 299
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.57 Score=47.01 Aligned_cols=111 Identities=17% Similarity=0.048 Sum_probs=87.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSN--RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
.+....++..+...+.+++.++.++.. +...+...+....+......++..+|++..+..+||.+....|....+...
T Consensus 44 ~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 44 EGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred cCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 344445788888888889988876443 477788889999999999999999999999999999999888877777762
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
+.+.+....|++......+-.++. ++++..+..
T Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ 156 (620)
T COG3914 124 ISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLG 156 (620)
T ss_pred HHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhc
Confidence 445589999999998888866666 666555444
No 300
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.89 Score=43.77 Aligned_cols=133 Identities=8% Similarity=0.087 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH------------HccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM------------QSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 151 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
+++++.-.+.+..+|.. ..+|+..-.++. ...-+++-+.+...+++.+|++..+|+.+
T Consensus 46 ~e~l~lt~~ll~~npe~----------~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR 115 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEF----------YTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR 115 (421)
T ss_pred hHHHHHHHHHHhhCchh----------hhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence 35677777777777664 455554333322 22346777888899999999999999999
Q ss_pred HHHHHHhh--cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 219 AAAYTQIH--QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN----YNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 219 a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
.+++.+.+ ++..=++.+.++++.+|.+-.+|...-.+...... ..+-++ +..+++.-++.|-.+|.....+..
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~-ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELE-FTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHH-HHHHHHhccchhhhHHHHHHHHHH
Confidence 99999877 46888999999999999998888777666655433 456666 788888889999999998887766
Q ss_pred HH
Q 013948 293 KL 294 (433)
Q Consensus 293 ~~ 294 (433)
.+
T Consensus 195 ~l 196 (421)
T KOG0529|consen 195 TL 196 (421)
T ss_pred Hh
Confidence 33
No 301
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.06 E-value=0.11 Score=51.17 Aligned_cols=91 Identities=16% Similarity=0.055 Sum_probs=78.3
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---QQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
..+.+..++..|.++++..|.. ...+.+.+.++++. |+.-.|+.-...|++++|....+|+.|+.++
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~----------~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDA----------IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARAL 455 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccch----------hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence 3578889999999999998876 77777788877765 4666788888999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~ 246 (433)
.+++++.+|+.+...+....|.+.
T Consensus 456 ~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 456 NELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHhhHHHhhhhHHHHhhcCchhh
Confidence 999999999999999888888553
No 302
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.87 E-value=1.5 Score=34.65 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccc-cccchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hcCCC----HH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGA-HAYNQKN-LAEIFKCQGNRVMQSQQYSDAIELYSFAIA-------LCGNN----AV 213 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------~~p~~----~~ 213 (433)
.|.|++|..-++++++.....+. ..+++.. .+-.+-.|+..+...|+|++++..-.++|. ++.+. ..
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 48899999999999998765532 2223222 255667788889999999998877777764 34443 34
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+.+++|.++..+|+.++|+..|+++-++
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 5678899999999999999999998765
No 303
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.86 E-value=2.1 Score=38.20 Aligned_cols=109 Identities=12% Similarity=-0.003 Sum_probs=75.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHhcCC-----
Q 013948 143 GNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQY-------SDAIELYSFAIALCGN----- 210 (433)
Q Consensus 143 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~p~----- 210 (433)
.....-.+++|++.|.-|+-...-.. ..+...+..+..+|-+|...|+- ..|++.|.+++.....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~---~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKK---EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 33345689999999998887543221 11234577888888888888884 4566666666654322
Q ss_pred -CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q 013948 211 -NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-KAYSRLGL 254 (433)
Q Consensus 211 -~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~ 254 (433)
...+.+.+|.+..+.|++++|..+|.+++....... .....+|.
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 257889999999999999999999999998743332 34444443
No 304
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.78 E-value=0.32 Score=49.87 Aligned_cols=36 Identities=3% Similarity=-0.081 Sum_probs=32.2
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..++++..++ ..+...|++++|-++|-.+++++.-+
T Consensus 993 k~~~vhlk~a-~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 993 KMGEVHLKLA-MFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred cCccchhHHh-hhhhhccchhhhhHhhHHHhhccccc
Confidence 4557888899 88999999999999999999999877
No 305
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.93 Score=45.97 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l 287 (433)
++.+-|.-.++..+|..++++|...++.-|. .......++.||..+.+.+.|.+ +++.|-+.+|.++-....+
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E-~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVE-VYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHhhccccHHHHHHH
Confidence 4556677788999999999999999988665 36778889999999999999999 9999999999999888888
Q ss_pred HHHHHHHHHHHHhcccccccC
Q 013948 288 RMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~ 308 (433)
-.+....+..++|.....+..
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHH
Confidence 888888888888888766554
No 306
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.60 E-value=0.75 Score=37.22 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHc---cCHHHHHHHHHHHHH-hcCCC-HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHH
Q 013948 178 AEIFKCQGNRVMQS---QQYSDAIELYSFAIA-LCGNN-AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~---~~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 251 (433)
....+.++.++... .+..+.+.+++..++ -.|.. .++.+.++..++++++|+.++.+.+..++..|+|..+.-.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45667777777654 467889999999996 45543 5788899999999999999999999999999999876543
No 307
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.065 Score=50.27 Aligned_cols=117 Identities=27% Similarity=0.309 Sum_probs=95.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcC-------------------CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIALCG-------------------NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
....|...++.++|..|..-|.+++..-. .-.....+++.+-++.+.+..|+.....+++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 33445667777888888887777764311 11345667889999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 242 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
++....+++.++..+....++++|++ +++.+....|++......+..+.....++.
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~-~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALE-DLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHH-HHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999 999999999999998888877766665544
No 308
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.54 E-value=1.8 Score=40.50 Aligned_cols=118 Identities=22% Similarity=0.176 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-------QYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
.|..+|..+|+++....-.. -..+.+.+|.++..-. +...|+..|.++-... ++.+.+.+|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~---------a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~ 195 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVE---------AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGR 195 (292)
T ss_pred cCHHHHHHHHHHHHHcCChh---------HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHH
Confidence 48899999999998873221 0234777777776541 3347999999988766 8889999998
Q ss_pred HHHH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhhCCCC
Q 013948 221 AYTQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG---------------NYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 221 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---------------~~~~A~~~~~~~al~~~p~~ 280 (433)
+|.. ..++.+|+.+|.++.+... ..+.+.++ +++..| +...|.. ++..+....+..
T Consensus 196 ~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~ 270 (292)
T COG0790 196 MYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALE-WLQKACELGFDN 270 (292)
T ss_pred HHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHH-HHHHHHHcCChh
Confidence 8865 3389999999999999877 88999999 777666 7788888 888877665543
No 309
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.43 E-value=0.28 Score=47.91 Aligned_cols=123 Identities=12% Similarity=0.129 Sum_probs=96.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.||+-.|-.-...++...|.. +.-....+.+....|+|+.|...+.-+-..-.....+...+-....++|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~----------p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQD----------PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCC----------chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh
Confidence 478888888888888877766 5556667888889999999988886655444333444444556677899
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
++++|.......+.-.-+.++....-+-....+|-++++.. ++++.+.++|..
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~-~wk~~~~~~~~~ 424 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH-YWKRVLLLNPET 424 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH-HHHHHhccCChh
Confidence 99999999988888877888887777777888899999999 999999988753
No 310
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.34 Score=44.17 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
...++=.++...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|+. .++..++..|+++.+-.-
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~-dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALE-DLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHH-HHHHHHHhCCCchHHHHH
Confidence 344455667777888888888888888888888888888888888888888888 888888888887765443
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.29 E-value=0.099 Score=32.65 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
++.++|.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4445555555555555555555555443
No 312
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.20 E-value=5.7 Score=42.16 Aligned_cols=204 Identities=11% Similarity=0.005 Sum_probs=122.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-----AVYYSNRAAA 221 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 221 (433)
..++++|..+..++....+... ........+...-..|.+....|++++|++..+.++..-|.+ ..+...+|.+
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~-~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPM-HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCc-ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 3678888888877766554421 111122335666678888999999999999999999987765 5678889999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCC----c--HHHHHHHHHHHHHcCCHHHHHHH-HHHHH----HhhCCCCHHHHHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPN----Y--SKAYSRLGLAYYAQGNYNDAIEK-GFKKA----LQLDPNNEAVKENIRMA 290 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~lg~~~~~~g~~~~A~~~-~~~~a----l~~~p~~~~~~~~l~~~ 290 (433)
..-.|++++|..+...+.++... + ..+.+..+.++..+|+...|... .+... +...|-..-.....+.+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 99999999999999999888432 2 34445568888889943333220 22222 22233333233333333
Q ss_pred HHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 291 EQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 291 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
+...-+.+.+..... ..+.+...-...+.....+...++ .+....|+.++|....
T Consensus 587 l~~~~r~~~~~~ear------------------------~~~~~~~~~~~~~~~~~~~~~~LA-~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 587 LRAWLRLDLAEAEAR------------------------LGIEVGSVYTPQPLLSRLALSMLA-ELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHHHhhhhHHhh------------------------hcchhhhhcccchhHHHHHHHHHH-HHHHhcCCHHHHHHHH
Confidence 322222332222111 001011111112223344445888 9999999999998877
Q ss_pred hhhcCC
Q 013948 371 NVSGSD 376 (433)
Q Consensus 371 ~~al~l 376 (433)
.....+
T Consensus 642 ~~~~~l 647 (894)
T COG2909 642 DELERL 647 (894)
T ss_pred HHHHHH
Confidence 765443
No 313
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.19 E-value=0.45 Score=37.16 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=66.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhCCCCHHH
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYS---KAYSRLGLAYYAQGN-----------YNDAIEKGFKKALQLDPNNEAV 283 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~~al~~~p~~~~~ 283 (433)
+|.-++..|++-+|++..+..+...+++. ..+..-|.++..+.. .-.+++ +|.++..+.|.....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve-~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVE-CFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHH-HHHHHhccChhHHHH
Confidence 46778999999999999999999988876 556667888876542 346788 999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 013948 284 KENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
++.+|.-+....-|+++....+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 8888866555555555554433
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.01 E-value=0.61 Score=38.48 Aligned_cols=84 Identities=13% Similarity=-0.003 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
.+.....+-...++++++...+...--+.|+.+..-..-|.++...|+|.+|+. .|+....-.+..+-..-.++.|+..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~r-vlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAAR-ILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHH-HHHhhhccCCCchHHHHHHHHHHHh
Confidence 344444555568999999999999999999999999999999999999999999 9999988888888888889999998
Q ss_pred HHHHH
Q 013948 294 LREER 298 (433)
Q Consensus 294 ~~~~~ 298 (433)
+|+..
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 88743
No 315
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.87 E-value=0.74 Score=49.13 Aligned_cols=159 Identities=12% Similarity=0.027 Sum_probs=102.5
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 270 (433)
.+..+.|.++-.+ -+.+..|..+|.+.++.|...+|++.|-+| +++..|...-.+..+.|.|++-+. ++
T Consensus 1088 i~~ldRA~efAe~-----~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~-yL 1156 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAER-----CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVK-YL 1156 (1666)
T ss_pred hhhHHHHHHHHHh-----hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHH-HH
Confidence 3555555554444 246789999999999999999999998765 778889999999999999999999 87
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHH
Q 013948 271 KKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLM 350 (433)
Q Consensus 271 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~ 350 (433)
.-+-+.- ..+.+-..|-.+|.+.++..+-+.+..-.........+.-....+.|+.|.- -- .+..-|.
T Consensus 1157 ~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl------~y-----~~vSN~a 1224 (1666)
T KOG0985|consen 1157 LMARKKV-REPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKL------LY-----SNVSNFA 1224 (1666)
T ss_pred HHHHHhh-cCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHH------HH-----HHhhhHH
Confidence 7776542 2223333444555566665554444332221111112222333343333332 22 4445567
Q ss_pred HHhhcccccCCChhhHHHHHhhh
Q 013948 351 NMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 351 ~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.++ ..+..+|++..|...-++|
T Consensus 1225 ~La-~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1225 KLA-STLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHH-HHHHHHHHHHHHHHHhhhc
Confidence 788 7788889999998888887
No 316
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.83 E-value=4.7 Score=40.81 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-PNYSKAYSRLGLAY 256 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 256 (433)
...|......-...|+++.....|++++--+......|...+..+...|+.+-|-..+..+.+.. |..+..++.-+..-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 44566666667788999999999999998888889999999999999999999998888888774 77788888888899
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhc
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 301 (433)
-..|++..|.. .+++...-.|+...+-..........|+.+.+.
T Consensus 377 e~~~n~~~A~~-~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 377 ESNGNFDDAKV-ILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HhhccHHHHHH-HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 99999999999 999999877998887777777777777776665
No 317
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.80 E-value=0.087 Score=48.53 Aligned_cols=75 Identities=11% Similarity=0.169 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSN-RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
+..|...+......|-|.+--..|.+++..+|.++++|.. -+.=+...++++.+...+.++++++|++|..|+..
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 6777777777778889999999999999999999999976 45557778899999999999999999999888653
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.69 E-value=0.17 Score=31.50 Aligned_cols=30 Identities=40% Similarity=0.643 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
..++.++|.+|..+|++++|.. ++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALE-LLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhH-HHHHHHHH
Confidence 3578899999999999999999 99999875
No 319
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.54 E-value=1.7 Score=33.09 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=47.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG 209 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 209 (433)
.|++..|++.+.+..+.......... ......+...+|.++...|++++|+..+++++.+-.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~-~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSS-NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchh-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 48999999999999988766532211 123456788889999999999999999999988743
No 320
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.37 E-value=8.8 Score=37.76 Aligned_cols=127 Identities=11% Similarity=0.143 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHH--HHHHHHhc---------CC
Q 013948 176 NLAEIFKCQGNRVMQSQQ-YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR--DCLKSIDI---------DP 243 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~---------~p 243 (433)
....-+..-|.-+...|. -++|+..++.++...|.|..+-. ....+. ...|.+|+. .+.+.+.+ .|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n-~v~~fv-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN-IVFLFV-KQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH-HHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345556666777777776 88999999999999988875432 222222 223444443 22333332 12
Q ss_pred ---CcHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 244 ---NYSKAYSRL--GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 244 ---~~~~~~~~l--g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
.+.+.-.-| |.-++.+|+|.++.. +-.-..++.| .+.++..+|.|.....++.+|-.+...
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~-ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYL-YSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 233444444 444678999999999 8888889999 899999999999999999999888774
No 321
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.05 E-value=0.75 Score=41.99 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
...++=..+...++++.|..+.++.+.++|+++.-+--+|.+|.++|.+.-|++.+...++.-|+.+.+-...+...
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34444456778899999999999999999999999999999999999999999999999999999987766555443
No 322
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.61 E-value=1 Score=48.81 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=79.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhh-------cHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 184 QGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIH-------QYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 184 lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
..+.+...+.|++|+..|++...-.|.. .++.+..|..+...- .+++|+..|++... .|.-|--|+..|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 3456677888999999999999888865 578888888876542 46777777776544 477788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
.+|.++|+|++-++ +|.-|++..|+.|..-
T Consensus 560 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 560 LVYQRLGEYNEEIK-SLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHhhhHHHHHH-HHHHHHHhcCCCCccH
Confidence 99999999999999 9999999998887643
No 323
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.55 E-value=3.6 Score=37.55 Aligned_cols=121 Identities=14% Similarity=0.173 Sum_probs=72.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----CCCH-HHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-----GNNA-VYYSNRAAA 221 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~ 221 (433)
.+.++|+.-|++++++.+..+ ..-..++...-.+.++.++|++-++.|.+.+..- .+.. ...+.+-..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKg------eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKG------EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhcccccc------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 478899999999999987753 2235577777888999999999999998876431 1111 111111111
Q ss_pred HHHhhcHHHHHHHHHHHHhc--CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 222 YTQIHQYAEAVRDCLKSIDI--DPNYSKAY----SRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
-....+.+--..+|+..+.. +..+...| ..||.+++..++|.+-.. .+++.-.
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~K-IlkqLh~ 173 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQK-ILKQLHQ 173 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHH-HHHHHHH
Confidence 11222233333334333322 12233333 458999999999887776 6665443
No 324
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=1.8 Score=41.70 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ--QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.-+++-+.+...+++.+|+. ..+|+.+..++.+.+ ++..=+...+++++.+|.+..+|..+=.+....
T Consensus 89 ~~ld~eL~~~~~~L~~npks----------Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~ 158 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKS----------YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA 158 (421)
T ss_pred HhhHHHHHHHHHHHHhCchh----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHH
Confidence 35677888999999999987 899999999888765 468889999999999999998888776666554
Q ss_pred hc----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013948 226 HQ----YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA------QGN------YNDAIEKGFKKALQLDPNNEAVKENI 287 (433)
Q Consensus 226 ~~----~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------~g~------~~~A~~~~~~~al~~~p~~~~~~~~l 287 (433)
.. ..+=+++..++|..++.|..+|.....++.. .|+ ...-++ .-..|+-.+|+|..+|+..
T Consensus 159 ~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle-~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 159 ERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELE-MVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred hcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHH-HHHHHHhcCccccceeeeh
Confidence 43 5677889999999999999999998888763 231 233444 5667777899999988773
No 325
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.25 E-value=0.79 Score=34.91 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 247 ~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
.+.+++|.++...|++++|+. .+++++++
T Consensus 42 ~all~lA~~~~~~G~~~~A~~-~l~eAi~~ 70 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQ-ALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHH-HHHHHHHH
Confidence 344455555555555555555 55555544
No 326
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.13 E-value=2.2 Score=39.48 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 240 (433)
..++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555444
No 327
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.11 E-value=7 Score=37.94 Aligned_cols=132 Identities=13% Similarity=0.045 Sum_probs=97.5
Q ss_pred cchHHHHHHHHHHHHHHHh-----hc---------c--ccc---cchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEME-----KS---------G--AHA---YNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p-----~~---------~--~~~---~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
.|+...|.++.++||-... .. + ... ..+.....+.+.....+.+.|-+..|.++.+-.+.+
T Consensus 53 ~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsL 132 (360)
T PF04910_consen 53 QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSL 132 (360)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 5788888888888874332 11 1 111 224445667777778888999999999999999999
Q ss_pred cCC-CH-HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCH---------------HHH
Q 013948 208 CGN-NA-VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP-----NYSKAYSRLGLAYYAQGNY---------------NDA 265 (433)
Q Consensus 208 ~p~-~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~---------------~~A 265 (433)
+|. |+ .+.+.+-....+.++|+--+..++....... ..|..-+..+.+++..++- +.|
T Consensus 133 dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A 212 (360)
T PF04910_consen 133 DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESA 212 (360)
T ss_pred CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHH
Confidence 999 65 3455556666788888888888877665211 1356778889999999988 899
Q ss_pred HHHHHHHHHhhCCC
Q 013948 266 IEKGFKKALQLDPN 279 (433)
Q Consensus 266 ~~~~~~~al~~~p~ 279 (433)
.. .+++|+...|.
T Consensus 213 ~~-~L~~Ai~~fP~ 225 (360)
T PF04910_consen 213 DE-ALQKAILRFPW 225 (360)
T ss_pred HH-HHHHHHHHhHH
Confidence 99 99999998874
No 328
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.07 E-value=13 Score=39.72 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=82.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC--HHHHHHHHHHH----HHhcCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ--YSDAIELYSFA----IALCGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~a----l~~~p~~~~~~~~la~ 220 (433)
.|++++|..+.+.+.++....+..+ -..++....+.++..+|+ +.+....|... +...|-+.-....++.
T Consensus 510 ~G~~~~Al~~~~~a~~~a~~~~~~~----l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 510 RGELTQALALMQQAEQMARQHDVYH----LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred hchHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 5999999999999998866543221 225666777888888994 34444444332 2223444344444555
Q ss_pred HHHHhhcHHHHHHHHHHHHhcC----CC--cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 221 AYTQIHQYAEAVRDCLKSIDID----PN--YSK-AYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~----p~--~~~-~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
++...-+++.+.....+.++.. |. .+. +++.|+.+.+..|++++|.. .+.....+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~-~l~~~~~l 647 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALA-QLDELERL 647 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHH
Confidence 5555555888888877777763 22 222 33489999999999999999 88877654
No 329
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.02 E-value=0.6 Score=28.48 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH--HHHHHhhCCCC
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKG--FKKALQLDPNN 280 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~--~~~al~~~p~~ 280 (433)
++.++.+|..+...|++++|+. . |.-+..+++.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~-~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIH-FFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHH-HHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHhcccC
Confidence 3578899999999999999999 9 44777777754
No 330
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.90 E-value=2.4 Score=30.89 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR---AAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+......|.-++...+.++|+..++++++..++....+..+ ..+|...|+|.+.+.+...=+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777788888888888887777665544443 45566777777777665544443
No 331
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.86 E-value=9.9 Score=37.37 Aligned_cols=193 Identities=8% Similarity=-0.111 Sum_probs=94.5
Q ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 013948 157 FHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 157 ~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 236 (433)
++++++..+-. ++.|+.....+...++-+.|+....+++...|. +.+.++.+|...++-+....+|+
T Consensus 291 ~~q~~~y~~~~----------~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fd 357 (660)
T COG5107 291 HNQILDYFYYA----------EEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFD 357 (660)
T ss_pred HHHHHHHhhhh----------HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHH
Confidence 56666665555 666666666666666777777666666655554 56666666666666665555666
Q ss_pred HHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCc--
Q 013948 237 KSIDIDPNYSKAYSRLGLAYYA---QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSH-- 311 (433)
Q Consensus 237 ~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 311 (433)
+++..= .--+.++..-.. -|+++...+ .+-+-. ....-+|+-+-..-.+..-.+.|...+-++...+
T Consensus 358 k~~q~L----~r~ys~~~s~~~s~~D~N~e~~~E-ll~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~ 429 (660)
T COG5107 358 KCTQDL----KRKYSMGESESASKVDNNFEYSKE-LLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIV 429 (660)
T ss_pred HHHHHH----HHHHhhhhhhhhccccCCccccHH-HHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCC
Confidence 554320 000001110000 122211111 111100 0111222222111122222233333333333222
Q ss_pred --cchhh---hhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 312 --YSQES---NQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 312 --~~~~~---~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.-... --|...|++.-|...| .+...| +.+......- ..+...++-+.|...|+++++.
T Consensus 430 ~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~-----d~~~y~~kyl-~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 430 GHHVYIYCAFIEYYATGDRATAYNIFELGLLKFP-----DSTLYKEKYL-LFLIRINDEENARALFETSVER 495 (660)
T ss_pred CcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCC-----CchHHHHHHH-HHHHHhCcHHHHHHHHHHhHHH
Confidence 10011 1134447777777777 777777 6666555555 6677778888888888866543
No 332
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.72 E-value=2.2 Score=46.37 Aligned_cols=129 Identities=15% Similarity=0.170 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS----Q---QYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
+.|++|+..|++.-..+|.- ..-.++.+..|..+..+ | .+++|+..|++.. -.|.-+-=|...|.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGR-------KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCc-------ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 67888888888888877754 33467888888776532 2 5788888887744 35666778999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG-----NYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
+|..+|+|++-+++|..|++..|.+|..-...-.+.+++. +...|.. ..--++.+.|.......
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV-FMLLALWIAPEKISSRE 629 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccccchH
Confidence 9999999999999999999999998876655555544432 3345666 56667777887654443
No 333
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.70 E-value=9.6 Score=34.88 Aligned_cols=124 Identities=11% Similarity=0.178 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------------HHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------------AVYYS 216 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~ 216 (433)
+.+--..+|+..++...... ...-+......+|.+++..++|.+-.+.+.+.-..+..+ ..+|-
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK----NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK----NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh----cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 34444455555555432210 011223344568999999998888777776665443221 23444
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHH--HH----HHHHHHHcCCHHHHHHHHHHHHHhhC
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAY--SR----LGLAYYAQGNYNDAIEKGFKKALQLD 277 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~----lg~~~~~~g~~~~A~~~~~~~al~~~ 277 (433)
.--..|..+++..+-...|++++.+...-|... -. =|..+.+.|+|++|-. .|=.|++..
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT-DFFEAFKNY 261 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT-DFFEAFKNY 261 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh-HHHHHHhcc
Confidence 445677888888888889999998854432222 11 2556788899999999 777777653
No 334
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.51 E-value=1.9 Score=47.47 Aligned_cols=131 Identities=12% Similarity=0.160 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc----
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI---- 241 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 241 (433)
++..+..+..++.++...+++++|+..-.++.-+ .|+....+.+++...+..++...|+..+.++..+
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 3445889999999999999999999998888654 3455678899999999999999999999998876
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 242 ----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--------NEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 242 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
.|.-.....+++.++...++++.|+. +++.|++.+-. ....+..+++....++++..+.....
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~-~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALR-YLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHH-HHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 35556677889999999999999999 99999986422 34456667777777888777666654
No 335
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.51 E-value=13 Score=37.80 Aligned_cols=111 Identities=13% Similarity=-0.013 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 224 (433)
..|+++...-.|++++--...- ...|...+.-....|+.+-|-..+.++.++. |..+.++..-+..--.
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y----------~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALY----------DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhh----------HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 4589999999999988754443 6788888888888899999998888888774 5667788888888888
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
.|+++.|...++++.+--|....+-........+.|+.+.+.
T Consensus 379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 899999999999999888988888888888888888888877
No 336
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.42 E-value=4.1 Score=35.10 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--CCCHHHHH-
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD--PNNEAVKE- 285 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~--p~~~~~~~- 285 (433)
..++..+|..|.+.|+.++|++.|.++...-.. ....++.+-.+....++|..... ++.++-.+- +.++....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~-~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEK-YIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHhccchHHHHHH
Confidence 467889999999999999999999998776433 24677888888999999999999 888887653 33443332
Q ss_pred ---HHHHHHHHHHHHHHhcccccccC
Q 013948 286 ---NIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 286 ---~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
.-|..+...+++..|...+....
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22444556677777777665444
No 337
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.32 E-value=6 Score=40.88 Aligned_cols=111 Identities=13% Similarity=0.183 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
+.....++..+|..+.....|++|.++|.+.-.. -++..|++.+.+|++-.. ....-|++...+-.+|
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a 859 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGELEV----LARTLPEDSELLPVMA 859 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHH
Confidence 3445678888888888888888888888765322 245667777777766433 3333488888888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
.++...|.-++|.+ +|-+. ..+.+ -......+.+|.+|.+..+
T Consensus 860 ~mf~svGMC~qAV~-a~Lr~-----s~pka---Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 860 DMFTSVGMCDQAVE-AYLRR-----SLPKA---AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHhhchHHHHHH-HHHhc-----cCcHH---HHHHHHHHHHHHHHHHHHH
Confidence 99999999899888 66442 11211 1123455667776666555
No 338
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.19 E-value=0.4 Score=29.62 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
++..+|.+....++|++|+.-|.+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544
No 339
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=91.09 E-value=7.4 Score=33.44 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=68.9
Q ss_pred cchHHHHH-HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 147 PSQVDKAS-RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM-----QSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
+|+|-+++ +.|++|..+...+.... ..+...+.+|..++ ..++...|++.|..+.. .+++.+..++|.
T Consensus 40 LgdYlEgi~knF~~A~kv~K~nCden----~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gL 113 (248)
T KOG4014|consen 40 LGDYLEGIQKNFQAAVKVFKKNCDEN----SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGL 113 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc----CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhh
Confidence 35555555 34666666555553221 22566777776655 35689999999999886 457888888888
Q ss_pred HHHHhh-------cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 221 AYTQIH-------QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 221 ~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
+++.-. +..+|.+++.++..++ +..+.+.|...|..
T Consensus 114 l~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 114 LHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred hhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 886532 3688999999998874 44566666665553
No 340
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.73 E-value=0.46 Score=29.37 Aligned_cols=29 Identities=34% Similarity=0.609 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 247 ~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
.++..||.+-...++|++|+. .|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~-D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIE-DYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHH-HHHHHHHH
Confidence 356677777777777777777 77777764
No 341
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.69 E-value=1 Score=41.81 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 197 AIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 197 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
|+.+|.+|+.+.|++...|+.+|.+....|+.-.|+-+|-+++......+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555554443344555555555444
No 342
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=12 Score=36.31 Aligned_cols=133 Identities=16% Similarity=0.133 Sum_probs=92.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCC-CHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----CGN-NAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~la~ 220 (433)
.+++.+|.++-...+.......... -+--.+..|+.+..++...|+...-...+...+.. +.. .+.+.+.+=.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRt-lD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRT-LDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 5788888887777665432211000 01112667888888888888876665555544432 211 2556677778
Q ss_pred HHHHhhcHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDI----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
+|...+.|+.|-....+..-- +...+...+.+|.+..-+++|..|.+ ++-+|+...|.+.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~-~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALE-YFLQALRKAPQHA 281 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHH-HHHHHHHhCcchh
Confidence 899999999998887776521 11345677889999999999999999 9999999999753
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.27 E-value=9.9 Score=33.30 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHHHHHhc
Q 013948 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN----NEAVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 245 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~a~ 301 (433)
.+...+.+|..|. ..+.++++. .+.++|++.+. ++++...|+.++..+++++.|-
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~-ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQ-LLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHH-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455555554444 455556666 66666655432 3555666666666666555543
No 344
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=90.26 E-value=1.3 Score=48.60 Aligned_cols=174 Identities=20% Similarity=0.189 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHH------HHH-HHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--------
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIE------LYS-FAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-------- 242 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------- 242 (433)
+.-....|......+.+.+|.+ .+. ..-.+.|.....+..++.++.+++++++|+....++.-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 4556667777778888888877 444 2234477888999999999999999999999998887653
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccch
Q 013948 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--------DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQ 314 (433)
Q Consensus 243 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 314 (433)
|+....+.+++...+..++...|.. .+.+++.+ .|.-.....++..++..+++++.|..+.+.+.......
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~-~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALK-SLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhh-hHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 5567888999999999999999999 88888765 35555666788888888899999888877544211100
Q ss_pred hhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 315 ESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 315 ~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.....- .....+..++ +++.-++++..|....+....+
T Consensus 1091 ------------------~g~~~l-----~~~~~~~~~a-~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1091 ------------------LGPKEL-----ETALSYHALA-RLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred ------------------cCccch-----hhhhHHHHHH-HHHhhhHHHHHHHHHHhhHHHH
Confidence 111222 5566777778 8888888888887777665543
No 345
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.20 E-value=1.2 Score=41.34 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 231 AVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 231 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
|..+|.+|+.+.|.+...|..+|.++...|+.-.|+- +|-+++-.....+.+..+|.....+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy-~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVY-YYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHH-HHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999 9999997766668889999888877
No 346
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.83 E-value=13 Score=37.72 Aligned_cols=121 Identities=14% Similarity=0.070 Sum_probs=89.1
Q ss_pred cchHHHHHHHHHHHHHHHhhcc--ccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cC----------
Q 013948 147 PSQVDKASRIFHDAINEMEKSG--AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----CG---------- 209 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p---------- 209 (433)
...|++|...|.-+....+.+. ......|.....+..++.++..+|+.+-|.+...++|-. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3678899998888887665543 234566888999999999999999999999998888742 22
Q ss_pred ------CCH---HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH-HHcCCHHHHHH
Q 013948 210 ------NNA---VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN-YSKAYSRLGLAY-YAQGNYNDAIE 267 (433)
Q Consensus 210 ------~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~-~~~g~~~~A~~ 267 (433)
.+- -+++..-.-+.+.|.+..|+++++-.++++|. +|.+...+-.+| .+..+|+==+.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~ 399 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIE 399 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHH
Confidence 221 23333445566789999999999999999999 887777766665 34555554444
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.73 E-value=0.42 Score=26.65 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=7.1
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 013948 250 SRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 250 ~~lg~~~~~~g~~~~A~~ 267 (433)
+.+|.++..+|++++|..
T Consensus 5 ~~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 5 LALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 333334444444444333
No 348
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.70 E-value=3.5 Score=39.96 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=70.6
Q ss_pred cchHHHHHHHHHHHHHHHhhcccccc------ch--hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAY------NQ--KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~------~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
.++|..|..-|+.+|.+..+-..... .+ .-....--.+..||...++.+.|+.+..+.|.++|....-+...
T Consensus 189 qk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrq 268 (569)
T PF15015_consen 189 QKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQ 268 (569)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHH
Confidence 46777777777777776544321110 01 11123344588899999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHh
Q 013948 219 AAAYTQIHQYAEAVRDCLKSID 240 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~ 240 (433)
|.|+..+.+|.+|-..+.-+.-
T Consensus 269 AavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 269 AAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887766543
No 349
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.66 E-value=8.1 Score=32.97 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=54.6
Q ss_pred HccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNN--AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY----SKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~ 263 (433)
..+..++|+..|...-+-.-.. .-+.+..|.+..+.|+-..|+..|..+-.-.|-- --+.+.-+.++...|-|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3445555555555433322222 2344455555556666666666665554443221 123344455555555555
Q ss_pred HHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 264 DAIEKGFKKA-LQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 264 ~A~~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
+-.. -.+.. -.-+|--..+...||...++.|++..|..++.
T Consensus 150 dV~s-rvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 150 DVSS-RVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHHH-HhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 5444 22221 12233344555555555555566555555544
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.64 E-value=0.47 Score=26.42 Aligned_cols=24 Identities=21% Similarity=-0.172 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHH
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~ 236 (433)
.+.+.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.37 E-value=2 Score=42.23 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=93.3
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 188 VMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
....|+.-.|-.....++...|.++......+.+...+|.|+.+...+.-+-..-..-..+..-+-..++.+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 35678999999999999999999999999999999999999999998876655544444555556667788999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 268 KGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
...-.+.-.-.++++..--+..-..+|-.+++..+.+..
T Consensus 379 -~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 379 -TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred -HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHH
Confidence 888877766677777666666666677777776654444
No 352
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.48 E-value=5.4 Score=36.97 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
|..=+...+++++. ....++..++..+...|+++.++..++..+.++|-+...|..+-..|...|+...|+. .|++.
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~-~y~~l 213 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIR-AYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHH-HHHHH
Confidence 44444444444442 2567888999999999999999999999999999999999999999999999999999 88887
Q ss_pred Hhh
Q 013948 274 LQL 276 (433)
Q Consensus 274 l~~ 276 (433)
-+.
T Consensus 214 ~~~ 216 (280)
T COG3629 214 KKT 216 (280)
T ss_pred HHH
Confidence 653
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.41 E-value=4.1 Score=29.71 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH---HHHHHHcCCHHHHHH
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL---GLAYYAQGNYNDAIE 267 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---g~~~~~~g~~~~A~~ 267 (433)
....|.=++..++..+|+..+.++++..++.+..+..+ ..+|...|+|.+.+.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677888888888888888877766555544 455677888888777
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.54 E-value=40 Score=35.35 Aligned_cols=127 Identities=18% Similarity=0.152 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHH
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM-QSQQYSDAIELYSFAIALCGN--N----AVYYSNRAAAY 222 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~ 222 (433)
...|+.+++-+++..+ ..+...+.+.+.+|.+++ ...+++.|..++.+++.+... . ..+.+.++.++
T Consensus 37 I~~ai~CL~~~~~~~~------l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~ 110 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFK------LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIY 110 (608)
T ss_pred HHHHHHHHHHHhccCC------CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 4456666666665211 123445888999999987 779999999999999888743 2 23456678888
Q ss_pred HHhhcHHHHHHHHHHHHhcCCC----cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhhC--CCCHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPN----YSKAYSRLG--LAYYAQGNYNDAIEKGFKKALQLD--PNNEAVK 284 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg--~~~~~~g~~~~A~~~~~~~al~~~--p~~~~~~ 284 (433)
.+.+... |+..++++++.... .....+.+- ..+...+++..|++ .++...... +.++.+.
T Consensus 111 ~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~-~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 111 FKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALE-NLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHhhhcCCHHHH
Confidence 8888777 99999999988655 222233332 22223379999999 999888765 4555543
No 355
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.51 E-value=9 Score=34.99 Aligned_cols=87 Identities=9% Similarity=0.106 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAY 222 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 222 (433)
.-...++++.+|+..+..... ..........+|..|+..|+|++|+.+|+.+....... ..+...+..|+
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~----~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQ----NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECA 228 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 444566777777776655421 12234455667777888888888888887775543322 34556666777
Q ss_pred HHhhcHHHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al 239 (433)
..+|+.+..+...-+.+
T Consensus 229 ~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 77777777666554443
No 356
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.96 E-value=3.6 Score=42.99 Aligned_cols=116 Identities=27% Similarity=0.417 Sum_probs=94.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHh--hcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAYTQI--HQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
..-|+.++..+++..|.--|..++.+-|.+ .....+.+.|+..+ ++|..++....-++...|....+++..+.+
T Consensus 57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~ 136 (748)
T KOG4151|consen 57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK 136 (748)
T ss_pred HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence 344678888899999988888888887743 56677788777765 599999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
|...+.++-|++ .+.-.....|.+..+..-....+..+...+
T Consensus 137 y~al~k~d~a~r-dl~i~~~~~p~~~~~~eif~elk~ll~~~d 178 (748)
T KOG4151|consen 137 YEALNKLDLAVR-DLRIVEKMDPSNVSASEIFEELKGLLELKD 178 (748)
T ss_pred HHHHHHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHHHhhcC
Confidence 999999999999 888888889999776665555554443333
No 357
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.94 E-value=16 Score=34.42 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=75.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---------------------
Q 013948 185 GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP--------------------- 243 (433)
Q Consensus 185 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------------------- 243 (433)
-+...+..+..+-|..-..|++++|.++.++..++.-- ..-..+|...++++++...
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r 268 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR 268 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence 34445566777788888889999999999988876432 2345666666666665411
Q ss_pred --Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHH
Q 013948 244 --NY--SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--EAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 244 --~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~ 299 (433)
.+ ..+..+++.|..++|+..+|++ .++...+-.|-. ..+..+|-.++..+..+.+
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K-~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVK-IMRDLMKEFPLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHH-HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2345568999999999999999 998887766632 2334455555555555444
No 358
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.27 E-value=24 Score=34.90 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=86.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNL-AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.+++.+|.++|.+..+.....+ ... .+.+-.+-...+-.++.+.-...+...-+..|.++......|...++.
T Consensus 19 q~~~~esEkifskI~~e~~~~~------f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSP------FLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcch------HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 6899999999999888654431 111 123333333345567777777777777777899999999999999999
Q ss_pred hcHHHHHHHHHHHHhc----CCC---------cHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 226 HQYAEAVRDCLKSIDI----DPN---------YSK--AYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~----~p~---------~~~--~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
+.|.+|++.+..--.. .|. .+. .-...+.++...|+|.++.. .+++.+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~-iLn~i~~ 156 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRA-ILNRIIE 156 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHH-HHHHHHH
Confidence 9999999988654433 111 111 22236888999999999999 8888764
No 359
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.43 E-value=2.6 Score=24.08 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=20.1
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 192 QQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
|+++.|...|++++...|.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45667777777777777777777766543
No 360
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=85.29 E-value=1.3 Score=41.85 Aligned_cols=118 Identities=15% Similarity=0.091 Sum_probs=89.6
Q ss_pred CcchHHHHHHHHHHHHHHHh---hccc--c----ccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEME---KSGA--H----AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p---~~~~--~----~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 216 (433)
..++++.|..-+.+++.... .... . .............++.+-...+.+..|+..-..+++.++....+++
T Consensus 234 kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~ 313 (372)
T KOG0546|consen 234 KKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHY 313 (372)
T ss_pred hhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHH
Confidence 46788888888888876543 1110 0 1112223345556788888999999999998888888888999999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 263 (433)
.++..+..+.++++|++.+..+....|++....-.+..+-....++.
T Consensus 314 Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 314 RRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred HHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999887766666655544443
No 361
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.12 E-value=23 Score=35.68 Aligned_cols=207 Identities=13% Similarity=0.017 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcH
Q 013948 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQIHQY 228 (433)
Q Consensus 151 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~ 228 (433)
+...+.+.......|++ +--....+..+...|+.+.|+..++..+...-. ....++.+|+++..+.+|
T Consensus 250 ~~~~~~Ll~~~~~~p~g----------a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~ 319 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKG----------ALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQY 319 (546)
T ss_pred HHHHHHhHHHHHhCCCC----------ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555655 455566677777777788889888888761111 245788899999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHHHH
Q 013948 229 AEAVRDCLKSIDIDPNYSKAYSRLG-LAYYA--------QGNYNDAIEKGFKKA---LQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 229 ~~A~~~~~~al~~~p~~~~~~~~lg-~~~~~--------~g~~~~A~~~~~~~a---l~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
..|...+......+.=..-.|..++ -|+.+ .|+-+.|.. .++.. +...|.+.++-..+. .+-++
T Consensus 320 ~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~-~~k~~~~l~~~a~K~~P~E~f~~---RKver 395 (546)
T KOG3783|consen 320 SRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQL-YFKVGEELLANAGKNLPLEKFIV---RKVER 395 (546)
T ss_pred HHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHH-HHHHHHHHHHhccccCchhHHHH---HHHHH
Confidence 9999999988887643333333343 44432 234444444 33332 333444333222211 22233
Q ss_pred HHHhcccccccCCCcc-chhhhhhhcC----CCCCCCCCcc-cccCCCCC-CCccHHHHHHHHhhcccccCCChhhHHHH
Q 013948 297 ERQRTGWDQTTSSSHY-SQESNQSTGG----FRSHGTPPSF-TMPFNTNA-LPTDIASMLMNMASNMPQAQPSQSRQGED 369 (433)
Q Consensus 297 ~~~a~~~~~~~~~~~~-~~~~~~~~~~----~~~~~A~~~~-al~~~p~~-~~~~~~~a~~~la~~~~~~~g~~~~A~~~ 369 (433)
+..-.. .++..... ......|... ...++.. .+ +--.+|.- ++.+..--++-+| .++..+|+...|..+
T Consensus 396 f~~~~~--~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g-~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 396 FVKRGP--LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKG-VILRNLGDSEVAPKC 471 (546)
T ss_pred Hhcccc--ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHH-HHHHHcCCHHHHHHH
Confidence 332221 01111111 0111122222 1111111 11 22223322 2224444566677 899999999999999
Q ss_pred HhhhcC
Q 013948 370 SNVSGS 375 (433)
Q Consensus 370 ~~~al~ 375 (433)
|+..++
T Consensus 472 f~i~~~ 477 (546)
T KOG3783|consen 472 FKIQVE 477 (546)
T ss_pred HHHHHH
Confidence 999883
No 362
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.21 E-value=30 Score=30.82 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=52.7
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
-+.+.++..+|+...+.-++.+|.+......+-..+.-.|+|++|.. .++-+-.+.|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~-Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALA-QLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHH-HHHHHhhcCcccc
Confidence 45677888999999999999999999888888899999999999999 8999999998764
No 363
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=84.03 E-value=25 Score=30.36 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=47.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-----c--CHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-----Q--QYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
+.+++..|+..|..+...+. +.+...+|.++... + +..+|.++++++.+++ +..+.++|
T Consensus 85 ~~~~l~~a~r~~~~aC~~n~------------~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~L 150 (248)
T KOG4014|consen 85 DDASLSKAIRPMKIACDANI------------PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLL 150 (248)
T ss_pred CccCHHHHHHHHHHHhccCC------------HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHH
Confidence 45788999999998887432 56777777776532 2 3789999999998765 66666667
Q ss_pred HHHHHH
Q 013948 219 AAAYTQ 224 (433)
Q Consensus 219 a~~~~~ 224 (433)
...++.
T Consensus 151 S~m~~~ 156 (248)
T KOG4014|consen 151 STMYMG 156 (248)
T ss_pred HHHHhc
Confidence 666654
No 364
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.87 E-value=28 Score=33.82 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-------C-Cc
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-------P-NY 245 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p-~~ 245 (433)
.-.++..+|..|..-|+++.|++.|.++-..+.+. ...|.++-.+-..+|+|.....+-.+|.+.- + -.
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 35678899999999999999999999977766543 4567788888888999999888888887761 0 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
+.+...-|.+...+++|..|.. +|-.+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~-~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAK-YFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 3455556777778889999998 776553
No 365
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=82.63 E-value=59 Score=33.01 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---QQYSDAIELYSFAIALCGNNA-VYYSNRAAAYT 223 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 223 (433)
.--+++..++++++...-.. ....++.++..-... ..++.-...+++++.+.-.++ -+|+++-..-.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~---------~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~ir 377 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKE---------NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIR 377 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHH
Confidence 34678888888888764332 133444444433222 247778888888887754443 34555545555
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA-YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
+..-.+.|...|.+|-+..-.-..++..-|.+ |+..++..-|.. .|+-.++..++.+........-+..+++-..+..
T Consensus 378 R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~Afr-IFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 378 RAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFR-IFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred HhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHH-HHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHH
Confidence 66667888888888877654445666666665 667899999999 9999999999999888887777788888777666
Q ss_pred cccccC
Q 013948 303 WDQTTS 308 (433)
Q Consensus 303 ~~~~~~ 308 (433)
.++.+.
T Consensus 457 LFEr~l 462 (656)
T KOG1914|consen 457 LFERVL 462 (656)
T ss_pred HHHHHH
Confidence 655443
No 366
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.14 E-value=18 Score=42.91 Aligned_cols=116 Identities=15% Similarity=0.071 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-CC--------
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-PN-------- 244 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~-------- 244 (433)
+....+.|...|++....|+++.|...+-.|.+.. -+.++..+|..++..|+-..|+..+++.++.+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 34568899999999999999999999999988766 67889999999999999999999999999764 22
Q ss_pred --c------HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 245 --Y------SKAYSRLGLAYYAQGNYN--DAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 245 --~------~~~~~~lg~~~~~~g~~~--~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
. ..+.+.++.-....++++ +-+. +|+.+.++.|....-++.+|.-+.
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk-~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILK-YYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHcccccCceeeHHHHHH
Confidence 1 123444444444555533 3344 899999999987777777774443
No 367
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.07 E-value=32 Score=29.52 Aligned_cols=134 Identities=16% Similarity=0.066 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAYT 223 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 223 (433)
+..++|+..|...-+-.-. ..-.-+.+..|-+...+|+-..|+..|..+-...|-- -.+...-+.++.
T Consensus 72 ~k~d~Alaaf~~lektg~g--------~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYG--------SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred CCchHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 5667777776665442111 1114467777888999999999999999876654321 234556678888
Q ss_pred HhhcHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 224 QIHQYAEAVRDCLKSI-DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
..|.|++.....+..- ..+|--..+.-.||..-++.|++..|.. +|.+... +...+....+.+.+.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~-~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKS-WFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHH-HHHHHHc-cccCcHHHHHHHHHH
Confidence 9999998766655432 2345556777789999999999999999 9999776 444444444444443
No 368
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.85 E-value=27 Score=35.50 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=75.2
Q ss_pred HccCHHHHHHHHHHHHHh------------cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc----------------
Q 013948 190 QSQQYSDAIELYSFAIAL------------CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI---------------- 241 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------- 241 (433)
....|++|...|.-+... +|.+...+..++.+...+|+.+-|.....++|=.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 345688999988888765 3556788999999999999998888877776532
Q ss_pred -----CCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHH
Q 013948 242 -----DPNYSK---AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-NEAVKENIRMAEQKL 294 (433)
Q Consensus 242 -----~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 294 (433)
.|.|-. +.+..-..+.+.|-+.-|.+ +.+-.++++|. +|-+...+-.+|...
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E-~cKlllsLdp~eDPl~~l~~ID~~ALr 390 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE-WCKLLLSLDPSEDPLGILYLIDIYALR 390 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence 233322 23333444567799999999 99999999998 877666665555433
No 369
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=81.79 E-value=23 Score=36.87 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-----C---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-------
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-----N---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID------- 242 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------- 242 (433)
+..|..++.....+-.++-|...|-+.-....- - ..--..+|.+-.--|+|++|.+.|-.+=+.+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAielr~ 771 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRK 771 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHH
Confidence 678888888877777777777766554211100 0 0001233444444566666666653321110
Q ss_pred ------------------C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013948 243 ------------------P---NYSKAYSRLGLAYYAQGNYNDAIEKGFKK 272 (433)
Q Consensus 243 ------------------p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 272 (433)
. ....++.++|..+..+..|++|.+ +|.+
T Consensus 772 klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~-yY~~ 821 (1189)
T KOG2041|consen 772 KLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK-YYSY 821 (1189)
T ss_pred hhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Confidence 1 123456666666666666666666 6554
No 370
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=81.75 E-value=58 Score=32.32 Aligned_cols=158 Identities=12% Similarity=0.011 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhhc--------------HHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQ--------------YAEAVRDCLK 237 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------~~~A~~~~~~ 237 (433)
......+|+.++..++|+-|...|+.+.+-..+| +.+.-..|.++...+. ++.|...|.+
T Consensus 208 E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 208 EAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 4456779999999999999999999887754433 1223333444444442 2344444444
Q ss_pred HH----hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CCC-----CHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 238 SI----DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--DPN-----NEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 238 al----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--~p~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+- ....--..+.+..+.++...+.+.+|.. .+-+.... ..+ ..-++..++.|+ .
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~-~~~~~~~~~l~~~l~~~~~alllE~~a~~~-------------~- 352 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAAD-QLIRWTSEILESDLRPFGSALLLEQAAYCY-------------A- 352 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHH-HHHHHHHHHHhhhhhhHhhHHHHHHHHHhh-------------c-
Confidence 21 1112234566667788888888888777 66555543 211 222333334333 0
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCC---CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFN---TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~---p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.+..+ |...-..-...|+-||+.-|...|+...|..+|.+|+..
T Consensus 353 --------------------------~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 353 --------------------------SLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred --------------------------ccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 01110 100001345567778878899999999999999998754
No 371
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=81.08 E-value=10 Score=38.98 Aligned_cols=179 Identities=11% Similarity=-0.020 Sum_probs=91.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHH------HHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHh--cCCCcHHHHHHHH
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFA------IALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID--IDPNYSKAYSRLG 253 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~a------l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 253 (433)
..++.++.-.|+|.+|.+.|.+. +++..+ .-.+.++.=++..|..++-....++--+ .+-+.|. .-|
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAA 710 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAA 710 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHH
Confidence 45677777788888888888652 332211 1234445555555555444433333211 1112222 246
Q ss_pred HHHHHcCCHHHHHH-----HHHH----HHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCC
Q 013948 254 LAYYAQGNYNDAIE-----KGFK----KALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFR 324 (433)
Q Consensus 254 ~~~~~~g~~~~A~~-----~~~~----~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 324 (433)
.++...|+.++|+. .|.. -+-+++-.+.+.+..++.-+..+....-|.+.+++... .......+...++
T Consensus 711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--~ksiVqlHve~~~ 788 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--LKSLVQLHVETQR 788 (1081)
T ss_pred HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--HHHHhhheeeccc
Confidence 67778888888876 1111 22223333333333333333333333333333322111 1111244556677
Q ss_pred CCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 325 SHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 325 ~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
+.+|...- +..| +-.+.+|+..| .++.+..++++|.+.|.+|-
T Consensus 789 W~eAFalA--e~hP----e~~~dVy~pya-qwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 789 WDEAFALA--EKHP----EFKDDVYMPYA-QWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred chHhHhhh--hhCc----cccccccchHH-HHhhhhhhHHHHHHHHHHhc
Confidence 77775422 2333 23345778888 88888888888888887764
No 372
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=80.07 E-value=9.5 Score=31.48 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 228 (433)
.+.....+...+..|++.-|.++...++..+|++..+...++.++.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456666777778888888888888888888888888888888888777743
No 373
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.83 E-value=8.2 Score=35.73 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 213 VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 213 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
..+...+..|...|.+.+|++..++++.++|-+...+..+-.++...|+--.++. .|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~k-hyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIK-HYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhh-HHHHHH
Confidence 3455566778888889999999999999999888888888888888888777777 666643
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.78 E-value=7.3 Score=36.03 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 248 AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 248 ~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
.....+..|...|.+.+|++ ..++++.++|-+...+..+..++..+|+.-.+...+..
T Consensus 281 llgkva~~yle~g~~neAi~-l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQ-LHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHH-HHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 44556788899999999999 99999999999999999999999999996666665443
No 375
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.96 E-value=33 Score=33.43 Aligned_cols=129 Identities=16% Similarity=0.058 Sum_probs=87.5
Q ss_pred HHhhcHHHHHHHHHHHHhc----C-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---h--CCCC-HHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDI----D-----PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ---L--DPNN-EAVKENI 287 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~----~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~---~--~p~~-~~~~~~l 287 (433)
+..+++.+|..+-+..+.- + --....|+.+..+|...|+...-.. .+...+. + +... ....+.|
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs-~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRS-FLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHhhhcCcchhHHHHHHHH
Confidence 4457888888777665432 1 1136788888899988888665555 4444332 2 2222 3344556
Q ss_pred HHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHH
Q 013948 288 RMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
-+.|...+.+++|.....+..-+. -..+. +.+..++.+| .+..-+++|..|.
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe----------------------~~snn-----e~ARY~yY~G-rIkaiqldYssA~ 267 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPE----------------------AASNN-----EWARYLYYLG-RIKAIQLDYSSAL 267 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCcc----------------------ccccH-----HHHHHHHHHh-hHHHhhcchhHHH
Confidence 777888888998887755433111 11223 6777888899 9999999999999
Q ss_pred HHHhhhcCCCCCc
Q 013948 368 EDSNVSGSDEPGI 380 (433)
Q Consensus 368 ~~~~~al~l~P~~ 380 (433)
+++-.|+...|..
T Consensus 268 ~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 268 EYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHhCcch
Confidence 9999999999975
No 376
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.30 E-value=52 Score=30.56 Aligned_cols=50 Identities=6% Similarity=-0.007 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI 198 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 198 (433)
.+++++|+..|.+.+..-.... .........+...++.+|...|++..--
T Consensus 16 ~~~~~~ai~~yk~iL~kg~s~d--ek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 16 SNDIEKAIGEYKRILGKGVSKD--EKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred hhhHHHHHHHHHHHhcCCCChh--hhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 4789999999999887511000 0011223557788999999998875433
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.95 E-value=23 Score=28.55 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhhcHH
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIA--LCGNNAVYYSNRAAAYTQIHQYA 229 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~ 229 (433)
.-..++++++.....+. ...+++.....|...+.... .+.++|..... +.-..+..|...|..+...|++.
T Consensus 44 ~L~~lLer~~~~f~~~~-~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 44 GLLELLERCIRKFKDDE-RYKNDERYLKIWIKYADLSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp HHHHHHHHHHHHHTTSG-GGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHhhhH-hhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHH
Confidence 33567777887775542 22234445566666554322 77777777655 34567889999999999999999
Q ss_pred HHHHHHHHHH
Q 013948 230 EAVRDCLKSI 239 (433)
Q Consensus 230 ~A~~~~~~al 239 (433)
+|.+.|+.+|
T Consensus 117 ~A~~I~~~Gi 126 (126)
T PF08311_consen 117 KADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999998875
No 378
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.37 E-value=23 Score=32.26 Aligned_cols=78 Identities=15% Similarity=0.070 Sum_probs=55.0
Q ss_pred cCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHc
Q 013948 192 QQYSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN------YSKAYSRLGLAYYAQ 259 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~ 259 (433)
..-...++.+.+|+...... ..+...+|.-|+..|+|++|+..|+.+...... ...+...+..|+...
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 34445666666666654322 356678899999999999999999998665332 245666778888888
Q ss_pred CCHHHHHHHHH
Q 013948 260 GNYNDAIEKGF 270 (433)
Q Consensus 260 g~~~~A~~~~~ 270 (433)
|+.+..+. +.
T Consensus 232 ~~~~~~l~-~~ 241 (247)
T PF11817_consen 232 GDVEDYLT-TS 241 (247)
T ss_pred CCHHHHHH-HH
Confidence 88888776 44
No 379
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.24 E-value=5.4 Score=39.07 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGN---------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+...+.+++.-.|+|..|++.++- ++++.. ....++..|.+|+.+++|.+|+..|..++-.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778889999999998764 333222 3567899999999999999999999998754
No 380
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.17 E-value=37 Score=36.44 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=17.8
Q ss_pred cchHHHHHHHHHHHHHHHhhc
Q 013948 147 PSQVDKASRIFHDAINEMEKS 167 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~ 167 (433)
.|++.+|++.|+.+|-..|--
T Consensus 1004 ~gKf~eAie~Frsii~~i~l~ 1024 (1202)
T KOG0292|consen 1004 EGKFGEAIEKFRSIIYSIPLL 1024 (1202)
T ss_pred cCcHHHHHHHHHHHHhheeEE
Confidence 699999999999998876543
No 381
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.14 E-value=28 Score=35.60 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=59.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+++.|.++..++-. ..-|..||......+++..|.++|.++.... . |-.++...|
T Consensus 650 lgrl~iA~~la~e~~s---------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~-----~---LlLl~t~~g 706 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEANS---------------EVKWRQLGDAALSAGELPLASECFLRARDLG-----S---LLLLYTSSG 706 (794)
T ss_pred cCcHHHHHHHHHhhcc---------------hHHHHHHHHHHhhcccchhHHHHHHhhcchh-----h---hhhhhhhcC
Confidence 5777777766555422 5568999999999999999999999986432 1 222344444
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
+-+.-...-..+-+....|. + =.+++..|+++++++ .+...
T Consensus 707 ~~~~l~~la~~~~~~g~~N~-A----F~~~~l~g~~~~C~~-lLi~t 747 (794)
T KOG0276|consen 707 NAEGLAVLASLAKKQGKNNL-A----FLAYFLSGDYEECLE-LLIST 747 (794)
T ss_pred ChhHHHHHHHHHHhhcccch-H----HHHHHHcCCHHHHHH-HHHhc
Confidence 43322222222222222221 1 135778888888887 65543
No 382
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.88 E-value=6.8 Score=22.22 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 260 GNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 260 g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
|+++.+.. .|++++...|.++.+|.....
T Consensus 1 ~~~~~~r~-i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARK-IYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHH-HHHHHHHHCCCChHHHHHHHH
Confidence 35566666 777777777777776666543
No 383
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.48 E-value=53 Score=28.85 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHH
Q 013948 195 SDAIELYSFAIALCG--NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN----YSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 195 ~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
++|...|-++- -.| +++...+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++..+|+++.|.-
T Consensus 123 ~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 45666665432 223 46889999998887 56899999999999999654 58999999999999999999875
No 384
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=76.23 E-value=12 Score=37.45 Aligned_cols=101 Identities=10% Similarity=-0.014 Sum_probs=57.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 013948 187 RVMQSQQYSDAIELYSFAIALCGNN-AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 187 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 265 (433)
.....++++++....... .+-|.- .......+.-+.+.|-++.|+... .++...+.|+ .+.|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHH
Confidence 335578888877776422 222322 334555566666777777766542 3344444443 478888888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 266 IEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 266 ~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
.+ . ....+++..|..||......|+.+-|+.+++
T Consensus 338 ~~-~-----a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 338 LE-I-----AKELDDPEKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HH-H-----CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HH-H-----HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87 3 2334577888888888888888888888877
No 385
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=75.69 E-value=16 Score=36.58 Aligned_cols=28 Identities=7% Similarity=-0.078 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKS 238 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~a 238 (433)
++..|-.||...+..|+++-|..+|+++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 4455555555555555555555555544
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.67 E-value=6 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al 239 (433)
+.+|.+|..+|+++.|...++.++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555
No 387
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.66 E-value=5.3 Score=39.14 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHH-------Hhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKS-------IDI-DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~a-------l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
....|..++.-+|+|..|++.++.. ... -+-+...++..|.+|..+++|.+|+. .|...|-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir-~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIR-TFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4566778889999999999998653 111 23356789999999999999999999 9998773
No 388
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.02 E-value=17 Score=32.25 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=54.6
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH
Q 013948 186 NRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 246 (433)
..+.+.+...+|+...+.-++.+|.+......+=.++.-.|+|++|...++-+-.+.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3456778999999999999999999988888888889999999999999999999999864
No 389
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.00 E-value=49 Score=30.57 Aligned_cols=130 Identities=10% Similarity=0.084 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ--------SQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 151 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
..|++.-+..++.+|.. ...|...=.+... .--++.=++.+..+++-+|.+..+|..+-.++
T Consensus 49 ~~aLklt~elid~npe~----------ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~L 118 (328)
T COG5536 49 VRALKLTQELIDKNPEF----------YTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWML 118 (328)
T ss_pred HHHHHHhHHHHhhCHHH----------HHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHH
Confidence 35777777777776654 4444443333322 12346667788999999999999999998888
Q ss_pred HHh--hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 223 TQI--HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY------YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 223 ~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~------~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
... .++..-+...++.+..++.|-.+|...-.++ ..-..+....+ +-..++..++.|..+|...-...
T Consensus 119 e~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~e-ytt~~I~tdi~N~SaW~~r~~~~ 194 (328)
T COG5536 119 ELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELE-YTTSLIETDIYNNSAWHHRYIWI 194 (328)
T ss_pred HhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHH-hHHHHHhhCCCChHHHHHHHHHH
Confidence 765 5678888889999999999987777665555 34444555566 66677888999999998874433
No 390
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.98 E-value=67 Score=31.47 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH--HHHHHHccCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQ--GNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l--g~~~~~~~~~~~A~~~~~~al~~ 207 (433)
.++|..|...+...++..|.. .. ...+..+ |..+...-++.+|.+.++..+..
T Consensus 144 ~~~y~aA~~~l~~l~~rl~~~-------~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 144 RYDYGAAARILEELLRRLPGR-------EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred cCCHHHHHHHHHHHHHhCCch-------hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 589999999999988853332 11 2334444 44456778999999999998765
No 391
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.82 E-value=31 Score=24.96 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=3.6
Q ss_pred hhCCCCHH
Q 013948 275 QLDPNNEA 282 (433)
Q Consensus 275 ~~~p~~~~ 282 (433)
...|+++.
T Consensus 41 ~~~pD~~~ 48 (75)
T cd02682 41 KNYPDSPT 48 (75)
T ss_pred HhCCChHH
Confidence 34454444
No 392
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=73.66 E-value=86 Score=29.94 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHHHHH--hhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEM--EKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYS 202 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 202 (433)
.+.++++..+.+.+... |.+++. .-.........+|..+...|+..+-.....
T Consensus 18 ~~~~~~~~il~~vl~~~~~~~s~e~--~i~~kE~~Ilel~~ll~~~~~~~~lr~li~ 72 (411)
T KOG1463|consen 18 NQVEEAINILKSVLNKAQGASSDEA--RIKEKEQSILELGDLLAKEGDAEELRDLIT 72 (411)
T ss_pred chhhhhHHHHHHHhhhhccccCCHH--HHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 56788888888888741 111100 112235567788999999998776544443
No 393
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=73.34 E-value=31 Score=24.96 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH-------HhcCCCHHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAI-------ALCGNNAVYY 215 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~ 215 (433)
.+...|.-+-..|++.+|+.+|+.++ ...|+++...
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 33344444445555555555554444 4456655433
No 394
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=73.22 E-value=64 Score=33.85 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--------------------------HHHHHHHHHHHHHhhcHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN--------------------------AVYYSNRAAAYTQIHQYAEA 231 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------------------~~~~~~la~~~~~~~~~~~A 231 (433)
.-.|..-|.+....+..++|.+++.++++.-.+. ..+.+.++.+..-.+++..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 3445556666777787778888888887642110 12466678888889999999
Q ss_pred HHHHHHHHhcC---CC------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013948 232 VRDCLKSIDID---PN------YSKAYSRLGLAYYAQGNYNDAIEKGFK 271 (433)
Q Consensus 232 ~~~~~~al~~~---p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 271 (433)
......+.... |. .+..++..|..+...|+.+.|.. .|.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~-~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALY-QYQ 428 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHH-HHh
Confidence 99988777653 22 47789999999999999999999 998
No 395
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.19 E-value=68 Score=33.91 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=23.1
Q ss_pred CCCCchhHHHHHHHHHHhhcCCCCCC
Q 013948 31 PGVDLEGLEVARECLTEVFKLDSPSA 56 (433)
Q Consensus 31 ~~~~~~~~e~A~~~~~kAl~ldP~~~ 56 (433)
...+.+..+.|++||+|||++.|...
T Consensus 296 ~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 296 NYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred CCcchhhHHHHHHHHHHHhccCchhh
Confidence 34588999999999999999999985
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.15 E-value=70 Score=31.31 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH--HHHHHH--HHHHHHhhcHHHHHHHHHHHHhc
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA--VYYSNR--AAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l--a~~~~~~~~~~~A~~~~~~al~~ 241 (433)
......+..++..++|..|...|...+..-|... ..+..+ |.-++..-++.+|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445566667778888888888877776423322 233333 33334455667777777766554
No 397
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.09 E-value=21 Score=32.88 Aligned_cols=132 Identities=13% Similarity=0.146 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ--SQQYSDAIELYSFAIALCGNNAVYYSNRAAAY---- 222 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~---- 222 (433)
-++.-++++..++..+|++ .+.|...--++.. ..++..=+...++.++.++.+.-.|..+-.+.
T Consensus 89 ~ldneld~~~~~lk~~PK~----------YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie 158 (328)
T COG5536 89 LLDNELDFLDEALKDNPKN----------YQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIE 158 (328)
T ss_pred hhhcHHHHHHHHHhcCCch----------hhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecch
Confidence 3455667788888888887 6777766655543 36688788888999999999988877766665
Q ss_pred --HHhhcHHHHHHHHHHHHhcCCCcHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 223 --TQIHQYAEAVRDCLKSIDIDPNYSKAYSRL---GLAYYAQGN------YNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 223 --~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---g~~~~~~g~------~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.....+..-+++-..+|..++-|..+|... -...+..|+ +++-++ +.-.++-.+|++.++|..+-.+.
T Consensus 159 ~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~-~i~~~if~~p~~~S~w~y~r~~~ 237 (328)
T COG5536 159 DLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELE-YIFDKIFTDPDNQSVWGYLRGVS 237 (328)
T ss_pred hhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHH-HHHhhhhcCccccchhhHHHHHh
Confidence 444455666777788899999999998887 333334443 556666 67777788999999888765443
No 398
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.77 E-value=22 Score=29.35 Aligned_cols=54 Identities=20% Similarity=0.035 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYND 264 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 264 (433)
........+...+..|++.-|.+..+.++..+|++..+...++.++.++|.-.+
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 456666777777888888888888888888888888888888877777665443
No 399
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.95 E-value=47 Score=33.59 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhc---CCC----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhCCCC
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDI---DPN----YSKAYSRLGLAYYAQGN-YNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~~al~~~p~~ 280 (433)
-++.+|.++..+|+...|..+|..+++. ... .|.++|.+|..+..++. ..++.. ++.+|-....++
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~-~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARA-LLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHH-HHHHHHhhcccc
Confidence 4667899999999999999999988843 222 47899999999999999 999999 999998877543
No 400
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.88 E-value=9.9 Score=24.33 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
.+.+|.+|...|+++.|.. .++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~-lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARE-LLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHH-HHHHHHH
Confidence 3679999999999999999 9999995
No 401
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=67.37 E-value=64 Score=25.90 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=20.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
+..+|...++.+++-.++-+|++|+.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 556777777788888888888887765
No 402
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.28 E-value=15 Score=26.65 Aligned_cols=19 Identities=42% Similarity=0.747 Sum_probs=15.1
Q ss_pred HccCHHHHHHHHHHHHHhc
Q 013948 190 QSQQYSDAIELYSFAIALC 208 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~ 208 (433)
..|+|++|+.+|..+++..
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 4578999999999888753
No 403
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.48 E-value=13 Score=27.02 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=9.8
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 013948 258 AQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~ 275 (433)
+.|+|++|+. +|..+++
T Consensus 18 ~~g~y~eA~~-~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVF-YYKEAAQ 34 (76)
T ss_pred HccCHHHHHH-HHHHHHH
Confidence 5566666666 5555543
No 404
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.45 E-value=14 Score=26.77 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=10.3
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 013948 258 AQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~ 275 (433)
..|+|++|+. +|..+++
T Consensus 18 ~~gny~eA~~-lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIE-LYTEAVE 34 (75)
T ss_pred HhhhHHHHHH-HHHHHHH
Confidence 4566666666 6666654
No 405
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.25 E-value=59 Score=32.03 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhcH----------HHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCG-----------NNAVYYSNRAAAYTQIHQY----------AEAVRDCL 236 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~~~~----------~~A~~~~~ 236 (433)
...+...|...+....|++|+.++-.|=+... +.+..-..+.+||+.+++. ..|.+.|.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 44566778888899999999988876644322 2344455567888877653 23333333
Q ss_pred HHH--------hc-CCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 237 KSI--------DI-DPNYS------KAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 237 ~al--------~~-~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
++. .+ .|..| ..++.-|.+.+.+|+-++|.+ +++.+..
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye-~le~a~~ 295 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYE-ALESAHA 295 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHH
Confidence 322 11 12222 345556999999999999999 9988754
No 406
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=64.25 E-value=30 Score=34.17 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.0
Q ss_pred cchHHHHHHHHHHHHHHHhhc
Q 013948 147 PSQVDKASRIFHDAINEMEKS 167 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~ 167 (433)
.|+|.+|+..|+.+|...|-.
T Consensus 217 ~gKF~eA~~~Fr~iL~~i~l~ 237 (422)
T PF06957_consen 217 AGKFEEAIEIFRSILHSIPLL 237 (422)
T ss_dssp TT-HHHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHHhhee
Confidence 699999999999999987654
No 407
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=64.20 E-value=15 Score=26.89 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
-|+.|..+..++++.+ ..|+.++|+. +|++++.
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~-~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALA-HYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHH-HHHHHHH
Confidence 3555666666655554 3456666666 6666554
No 408
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.64 E-value=14 Score=25.98 Aligned_cols=16 Identities=44% Similarity=0.848 Sum_probs=8.5
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al 274 (433)
+.|++++|+. +|.+++
T Consensus 17 ~~g~~~~A~~-~Y~~ai 32 (69)
T PF04212_consen 17 EAGNYEEALE-LYKEAI 32 (69)
T ss_dssp HTTSHHHHHH-HHHHHH
T ss_pred HCCCHHHHHH-HHHHHH
Confidence 4555555555 555544
No 409
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=63.39 E-value=76 Score=25.98 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=40.0
Q ss_pred HHHHH-HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 215 YSNRA-AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 215 ~~~la-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
|..+| .++...|+-++--+.+....+.+..+|..++.+|.+|.+.|+..++-+ .+.+|-+.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~e-ll~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANE-LLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHH-HHHHHHHh
Confidence 34444 345566666666667777776667788999999999999999999999 88888653
No 410
>PF12854 PPR_1: PPR repeat
Probab=63.14 E-value=20 Score=21.25 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHH
Q 013948 215 YSNRAAAYTQIHQYAEAVRDC 235 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~ 235 (433)
|.-+-..+.+.|+.++|++.+
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELF 30 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHH
Confidence 333333444444444444333
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.55 E-value=32 Score=29.86 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 229 AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 229 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
+..++..++.++..| ++..+.+++.++...|+.++|.. +.+++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~-~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQ-WLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCC
Confidence 344455555666555 55666777777777777777777 7777777777
No 412
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=62.20 E-value=58 Score=29.31 Aligned_cols=32 Identities=16% Similarity=0.033 Sum_probs=25.4
Q ss_pred CCCCCCchhHHHHHHHHHHhhcCCCCCCCCCC
Q 013948 29 PAPGVDLEGLEVARECLTEVFKLDSPSADGQR 60 (433)
Q Consensus 29 ~~~~~~~~~~e~A~~~~~kAl~ldP~~~~~~~ 60 (433)
.++.++.++|+.|+++...||+.+=.-|+-+.
T Consensus 90 mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~ 121 (230)
T PHA02537 90 MVWRFDIGDFDGALEIAEYALEHGLTMPDQFR 121 (230)
T ss_pred eeeeeeccCHHHHHHHHHHHHHcCCCCCcccc
Confidence 45666999999999999999999855554333
No 413
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.75 E-value=1.6e+02 Score=28.13 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC----------------------
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG---------------------- 209 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------------------- 209 (433)
+-++....+++++|+. +.++..++.-- ..-..+|.+.|++|++...
T Consensus 202 ~RI~~A~~ALeIN~eC----------A~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rR 269 (556)
T KOG3807|consen 202 ARIKAAYQALEINNEC----------ATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRR 269 (556)
T ss_pred HHHHHHHHHHhcCchh----------hhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhc
Confidence 3455566777777776 77777776432 2235566677777665311
Q ss_pred -CCH--HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHH
Q 013948 210 -NNA--VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY--SKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 210 -~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
.+. .+--.++.|..++|+..+|++.++...+-.|-. ..++-++-.++....-|.....
T Consensus 270 Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 270 DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 234467999999999999999999998887743 2445556666666555554444
No 414
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.42 E-value=1.5e+02 Score=31.28 Aligned_cols=79 Identities=8% Similarity=-0.105 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
..+|...+..+.... .+...+-....+....++++.+...+...-..........|.+|.++..+|+.++|.. .|+++
T Consensus 295 ~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~-~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEE-ILRQL 372 (644)
T ss_pred CHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 445555555443222 1223333333344466677666666655433333455667777777777777777777 77775
Q ss_pred H
Q 013948 274 L 274 (433)
Q Consensus 274 l 274 (433)
.
T Consensus 373 a 373 (644)
T PRK11619 373 M 373 (644)
T ss_pred h
Confidence 3
No 415
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.95 E-value=23 Score=37.67 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHH
Q 013948 156 IFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235 (433)
Q Consensus 156 ~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 235 (433)
.|.-|+.+..... .+.......+...|..++.+|++++|+..|-+.|..-.....+.. +....+..+=..++
T Consensus 349 ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k-----fLdaq~IknLt~YL 420 (933)
T KOG2114|consen 349 LYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK-----FLDAQRIKNLTSYL 420 (933)
T ss_pred hHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH-----hcCHHHHHHHHHHH
Confidence 4555655544431 122334566777777777888888888888777754321111111 13333344444555
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 236 LKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 236 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
+...+..-.+..--..|=.||.++++.++=-+
T Consensus 421 e~L~~~gla~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 421 EALHKKGLANSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHHcccccchhHHHHHHHHHHhcchHHHHH
Confidence 55555544444444556667777777665444
No 416
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.29 E-value=1.2e+02 Score=32.51 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
+...|.-+++.|++++|...|-++|
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 3334444444444444444444443
No 417
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=59.28 E-value=1.9e+02 Score=30.00 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=44.7
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 270 (433)
.+..+++....+.-+.-....+...+..+..+-..++.++|-.+|++.+..+|+ +.++..+.-+++.|-...|.. .+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~ 97 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL-IL 97 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH-HH
Confidence 344444444444433333334445555566666666666666666666666666 456666666666666666665 55
Q ss_pred H
Q 013948 271 K 271 (433)
Q Consensus 271 ~ 271 (433)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 4
No 418
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=59.15 E-value=2.1e+02 Score=29.10 Aligned_cols=130 Identities=14% Similarity=0.066 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
-.+.-...++.+.+..... -.+++.++.||... ..++=....++.++.+-++...--.|+..|.+ ++
T Consensus 80 ~k~~~veh~c~~~l~~~e~-----------kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik 146 (711)
T COG1747 80 HKNQIVEHLCTRVLEYGES-----------KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IK 146 (711)
T ss_pred hHHHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hc
Confidence 3455566778888876433 56888999999887 55667778888888888888877788877766 77
Q ss_pred HHHHHHHHHHHHhcC--------------------CCcHHHHHH------------HHHH--------HHHcCCHHHHHH
Q 013948 228 YAEAVRDCLKSIDID--------------------PNYSKAYSR------------LGLA--------YYAQGNYNDAIE 267 (433)
Q Consensus 228 ~~~A~~~~~~al~~~--------------------p~~~~~~~~------------lg~~--------~~~~g~~~~A~~ 267 (433)
-+.+..+|.+++... |++.+..+. +|.+ |....+|.+|+.
T Consensus 147 ~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~ 226 (711)
T COG1747 147 KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIR 226 (711)
T ss_pred hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHH
Confidence 788888888876541 222221111 1222 223457888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 268 KGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.+...++++..+..+..++..-+
T Consensus 227 -Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 227 -ILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred -HHHHHhhhcchhhhHHHHHHHHH
Confidence 88888888888777777765443
No 419
>PF12854 PPR_1: PPR repeat
Probab=59.14 E-value=28 Score=20.57 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013948 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKK 272 (433)
Q Consensus 245 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 272 (433)
+...|..+-..+.+.|+.++|.+ .|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~-l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFE-LFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHH-HHHh
Confidence 55678889999999999999999 8765
No 420
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=58.83 E-value=68 Score=23.31 Aligned_cols=15 Identities=13% Similarity=0.590 Sum_probs=6.5
Q ss_pred HcCCHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKA 273 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~a 273 (433)
..|+|++|+. +|.++
T Consensus 18 ~~g~y~eAl~-~Y~~a 32 (77)
T cd02683 18 QEGRFQEALV-CYQEG 32 (77)
T ss_pred HhccHHHHHH-HHHHH
Confidence 4444444444 44433
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.30 E-value=50 Score=28.67 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=38.2
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG 209 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 209 (433)
+....+..++..++.+...|. +..+..++.++...|+.++|.....++..+.|
T Consensus 123 ~~~~l~~~~~~a~~~l~~~P~-----------~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 123 DPEMLEAYIEWAERLLRRRPD-----------PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345566666667777776665 66777777777788888888888888777777
No 422
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=57.97 E-value=30 Score=24.31 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=14.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIA 206 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~ 206 (433)
...|..+-..|++++|+.+|.+++.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3334444456677777766666654
No 423
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=57.13 E-value=65 Score=25.83 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH----Hhh
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPN---------------YSKAYSRLGLAYYAQGNYNDAIEKGFKKA----LQL 276 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~a----l~~ 276 (433)
..+|....+.+++-.++-.|++|+.+..+ ..-...+||..+..+|+.+-.++ +++-| +.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELk-YLqlASE~VltL 83 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELK-YLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHH-HHHHHHHHHHHh
Confidence 35666777777777777777777766322 12345668888888888887777 76544 444
Q ss_pred CCCC-----HHHHHHHHHHHHHHHHHH
Q 013948 277 DPNN-----EAVKENIRMAEQKLREER 298 (433)
Q Consensus 277 ~p~~-----~~~~~~l~~~~~~~~~~~ 298 (433)
-|.. ......||.|...+=++-
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl~F~ 110 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALLDFM 110 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHHHHH
Confidence 4543 334556776665554443
No 424
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=56.55 E-value=1.9e+02 Score=27.73 Aligned_cols=131 Identities=12% Similarity=0.054 Sum_probs=90.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM-----QSQQYSDAIELYSFAIALCGNNAVYYSNRAAA 221 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 221 (433)
-+-++++...+.+++....-- | ....-.++-++- ..-+|..-...|.....+.| ++.+-.|++.+
T Consensus 269 r~lI~eg~all~rA~~~~~pG-------P--YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVA 338 (415)
T COG4941 269 RALIDEGLALLDRALASRRPG-------P--YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVA 338 (415)
T ss_pred HHHHHHHHHHHHHHHHcCCCC-------h--HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHH
Confidence 356777888888887763211 1 112222222322 23467666666665555555 66777788988
Q ss_pred HHHhhcHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDI--DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
..+..-.+.++...+..... =..+...+-..|..+.++|+.++|.. .|.+++.+.++..+..+...
T Consensus 339 la~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~-aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 339 LAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARA-AYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHH-HHHHHHHhcCChHHHHHHHH
Confidence 88888888888888777665 23456677789999999999999999 99999999988777655444
No 425
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=56.44 E-value=1.7e+02 Score=27.21 Aligned_cols=108 Identities=10% Similarity=0.064 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHH---HHHccC----HHHHHHHHHHHHHhcCCCHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNR---VMQSQQ----YSDAIELYSFAIALCGNNAVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~---~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~la 219 (433)
.++|++=...+.+..+....+. +.... +..+.. .+.... ...-...++.-++.+|++..++..+|
T Consensus 13 ~~~f~eLd~~l~~~~~~~~~s~------~~e~~--Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g 84 (277)
T PF13226_consen 13 ARDFAELDALLARLLQAWLQSR------DGEQR--YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMG 84 (277)
T ss_pred hCcHHHHHHHHHHHHHhhhhcc------Cccch--HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHH
Confidence 3788887777777776544320 00011 111111 122211 12466777888899999999988888
Q ss_pred HHHHHhh----------------------cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 013948 220 AAYTQIH----------------------QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY 262 (433)
Q Consensus 220 ~~~~~~~----------------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 262 (433)
..+.... -.+.|...+.+|+.++|+...++..+-.+-...|+.
T Consensus 85 ~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 85 MYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 8776532 134455555666666666666655555555555554
No 426
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=55.97 E-value=1.1e+02 Score=24.73 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=34.8
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 236 (433)
...+.....+.+++..+..++.++..+..+..+|.+. +..+.+..+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3456788888888888888777788888888888765 3455566665
No 427
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=54.54 E-value=1.5e+02 Score=26.03 Aligned_cols=64 Identities=5% Similarity=-0.078 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRA-AAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~al~~ 241 (433)
...+..+-..+...|+++.|-++|.-.+...+-|......+| .++.+.+.-....++++.....
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~ 105 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISF 105 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 445555666677899999999999999988777776666666 5666666555544666554433
No 428
>PF13041 PPR_2: PPR repeat family
Probab=53.92 E-value=57 Score=20.92 Aligned_cols=17 Identities=12% Similarity=0.389 Sum_probs=6.5
Q ss_pred HHHHccCHHHHHHHHHH
Q 013948 187 RVMQSQQYSDAIELYSF 203 (433)
Q Consensus 187 ~~~~~~~~~~A~~~~~~ 203 (433)
.+.+.|++++|.+.|++
T Consensus 12 ~~~~~~~~~~a~~l~~~ 28 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKE 28 (50)
T ss_pred HHHHCcCHHHHHHHHHH
Confidence 33333333333333333
No 429
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=53.74 E-value=22 Score=25.71 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=5.9
Q ss_pred hcHHHHHHHHHHHH
Q 013948 226 HQYAEAVRDCLKSI 239 (433)
Q Consensus 226 ~~~~~A~~~~~~al 239 (433)
|+|++|+.+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444433
No 430
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=53.21 E-value=23 Score=31.90 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=56.7
Q ss_pred HHHccCHHHHHHHHHHHHHhc---CCC---------HHHHHHHHHHHHHhhcHHHH--HHHHHHHHhc--CCCc--HHHH
Q 013948 188 VMQSQQYSDAIELYSFAIALC---GNN---------AVYYSNRAAAYTQIHQYAEA--VRDCLKSIDI--DPNY--SKAY 249 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~---p~~---------~~~~~~la~~~~~~~~~~~A--~~~~~~al~~--~p~~--~~~~ 249 (433)
++..|+|+.|++...-||+.+ |+. ++-...-+......|+.-+. ...+..+..- -|+. ...+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 367899999999999999875 332 12233344445555542111 1222222211 1333 3455
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHHhhCCCC
Q 013948 250 SRLGLAYY---------AQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 250 ~~lg~~~~---------~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
-..|..+. ..++...|+. ++++|++++|+.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~-~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALA-LLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHH-HHHHHHHhCCCC
Confidence 56777773 4568889999 999999999864
No 431
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=53.18 E-value=1e+02 Score=25.32 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=42.9
Q ss_pred HHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 180 IFKCQGNR-VMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 180 ~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
-|..+|.- +..+|+-++--+.+....+.+..++..+..+|.+|.+.|+..++-+.+.+|.+..
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34555543 4566777776677777666556689999999999999999999999999998753
No 432
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.48 E-value=80 Score=24.54 Aligned_cols=49 Identities=20% Similarity=0.122 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.......|.+.+..|++..|.+...++-+..+...-.+..-+.+-..+|
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 4445555666666777777777777775553333333333344444443
No 433
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=51.79 E-value=24 Score=19.54 Aligned_cols=10 Identities=30% Similarity=0.631 Sum_probs=3.6
Q ss_pred ccCHHHHHHH
Q 013948 191 SQQYSDAIEL 200 (433)
Q Consensus 191 ~~~~~~A~~~ 200 (433)
.|++++|.+.
T Consensus 13 ~~~~~~a~~~ 22 (31)
T PF01535_consen 13 MGQFEEALEV 22 (31)
T ss_pred cchHHHHHHH
Confidence 3333333333
No 434
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.63 E-value=94 Score=32.07 Aligned_cols=26 Identities=42% Similarity=0.419 Sum_probs=17.5
Q ss_pred hhhCCCCCCCchhHHHHHHHHHHhhc
Q 013948 25 DSVEPAPGVDLEGLEVARECLTEVFK 50 (433)
Q Consensus 25 ~~~~~~~~~~~~~~e~A~~~~~kAl~ 50 (433)
+..+....++.|.+++|++.+-+.-|
T Consensus 496 ~a~e~g~~v~eeGiedAfevLgE~sE 521 (794)
T KOG0276|consen 496 NAVEQGIEVTEEGIEDAFEVLGEVSE 521 (794)
T ss_pred HHHhcCCCCcchhHHHHHHHHhhhhh
Confidence 34445556688889999888765433
No 435
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=50.48 E-value=96 Score=29.59 Aligned_cols=203 Identities=10% Similarity=0.037 Sum_probs=110.0
Q ss_pred HHHHHhhhhCCCCCC---CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCC
Q 013948 19 SFLHFLDSVEPAPGV---DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMD 95 (433)
Q Consensus 19 ~~~~~l~~~~~~~~~---~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (433)
.|+.|=.++....+- ..+=.+|||..=+-...+-|..+++ .|-+..++... .......+..
T Consensus 190 iYliFneGysa~~G~~~~ra~Lc~EairLgRll~~L~p~EPE~---~GL~ALmll~~-sR~~AR~~~~------------ 253 (415)
T COG4941 190 IYLIFNEGYSATAGPEPTRADLCDEAIRLGRLLARLLPGEPEA---LGLLALMLLQE-SRRPARFDAD------------ 253 (415)
T ss_pred HHHHHhccccccCCCCcccchHHHHHHHHHHHHHHHcCCChHH---HHHHHHHHHHH-hhhhhccCCC------------
Confidence 445555666555444 3456789999988889999999844 33333332222 1211111110
Q ss_pred ccchhhhcccCcccccCCCCCCCChhHHHHHHHHHHHhhh---hhhcC-------CCCCCCcchHHHHHHHHHHHHHHHh
Q 013948 96 AKFSEASKSMGEDWTEEPDSTGVSKDELFGQFFAALEKFH---YFRTM-------PDGNDDPSQVDKASRIFHDAINEME 165 (433)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~p 165 (433)
..-+.+ .-.+-..|......+.+..+..++.... |.... ..-....-+|..-..+|.-...+-|
T Consensus 254 ----G~~vlL--~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap 327 (415)
T COG4941 254 ----GEPVLL--EDQDRSLWDRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP 327 (415)
T ss_pred ----CCeeec--cccchhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC
Confidence 000111 1122233443333444444444443311 10000 0001123467666666666666655
Q ss_pred hccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 166 KSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
. +-+-.+.+...-...-...++...+..... -.....++..+|..+.++|+-++|...|++++.+.+
T Consensus 328 S-----------PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~ 396 (415)
T COG4941 328 S-----------PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR 396 (415)
T ss_pred C-----------CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence 4 233344455554444466677666655443 123456788899999999999999999999999998
Q ss_pred CcHHHHHHHHH
Q 013948 244 NYSKAYSRLGL 254 (433)
Q Consensus 244 ~~~~~~~~lg~ 254 (433)
+..+..+.+..
T Consensus 397 ~~aer~~l~~r 407 (415)
T COG4941 397 NAAERAFLRQR 407 (415)
T ss_pred ChHHHHHHHHH
Confidence 87766555443
No 436
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.37 E-value=59 Score=34.33 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=84.5
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH---------HccCHHHHHHHHHHHHHhcCCCHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM---------QSQQYSDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~ 216 (433)
..||-++|+...-.+++..... .++.+...|++|- ..+..+.|++.|++|.+..|....- .
T Consensus 255 r~GDRakAL~~~l~lve~eg~v---------apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-I 324 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPV---------APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-I 324 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCC---------CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-c
Confidence 4599999999988888864332 2556666677663 3456788999999999999965433 3
Q ss_pred HHHHHHHHhh-cHHHHHHHHHHHHhcCC-----C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHH
Q 013948 217 NRAAAYTQIH-QYAEAVRDCLKSIDIDP-----N-------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAV 283 (433)
Q Consensus 217 ~la~~~~~~~-~~~~A~~~~~~al~~~p-----~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~ 283 (433)
|++.++...| .|+...+.-.-.++++. . +.++-+.++ +-.-.++|.+|++ ..+...++.|..+-.
T Consensus 325 N~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~-asVLAnd~~kaiq-Aae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 325 NLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFE-ASVLANDYQKAIQ-AAEMMFKLKPPVWYL 402 (1226)
T ss_pred cHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhh-hhhhccCHHHHHH-HHHHHhccCCceehH
Confidence 5666666666 34555554444444431 1 111111111 2234589999999 999999998876554
Q ss_pred HHHHHHH
Q 013948 284 KENIRMA 290 (433)
Q Consensus 284 ~~~l~~~ 290 (433)
..-+..+
T Consensus 403 kS~meni 409 (1226)
T KOG4279|consen 403 KSTMENI 409 (1226)
T ss_pred HHHHHHH
Confidence 4444443
No 437
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=49.98 E-value=35 Score=24.65 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=8.9
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 013948 258 AQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~ 275 (433)
..|+|++|+. +|..+++
T Consensus 18 ~~g~y~eA~~-lY~~ale 34 (75)
T cd02684 18 QRGDAAAALS-LYCSALQ 34 (75)
T ss_pred HhccHHHHHH-HHHHHHH
Confidence 4555555555 5555443
No 438
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=49.80 E-value=1.7e+02 Score=27.21 Aligned_cols=111 Identities=13% Similarity=0.136 Sum_probs=73.2
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHH---HHhhc----HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 186 NRVMQSQQYSDAIELYSFAIALCGN--NAVYYSNRAAAY---TQIHQ----YAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~---~~~~~----~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
..+...++|++=-..|.+......+ ..+..|..+... ..... ...-...++.=++..|++..+++.+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4566778888887777777644322 111112222221 11111 11345566666778999999999999988
Q ss_pred HHcC----------------------CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 257 YAQG----------------------NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 257 ~~~g----------------------~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
.... -.+.|.. ++.+|+.++|....+...+-.+-...|..
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~-~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVA-ALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHH-HHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 7642 2567788 89999999999999998888777777763
No 439
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.17 E-value=50 Score=23.97 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=15.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
...|.-+-..|+|++|+.+|..+++.
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33344444566777777777766653
No 440
>PF15469 Sec5: Exocyst complex component Sec5
Probab=47.74 E-value=1.7e+02 Score=25.01 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=17.2
Q ss_pred HHHccCHHHHHHHHHHHHHhcC
Q 013948 188 VMQSQQYSDAIELYSFAIALCG 209 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p 209 (433)
+...|+|+.++..|.++..+..
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHH
Confidence 4567899999999988877643
No 441
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=47.15 E-value=50 Score=19.59 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 013948 262 YNDAIEKGFKKALQ 275 (433)
Q Consensus 262 ~~~A~~~~~~~al~ 275 (433)
+++|+. +|+++.+
T Consensus 24 ~~~A~~-~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFK-WYEKAAE 36 (39)
T ss_dssp HHHHHH-HHHHHHH
T ss_pred ccchHH-HHHHHHH
Confidence 455555 5555543
No 442
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=46.20 E-value=47 Score=18.71 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=13.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAI 205 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al 205 (433)
..+-..+.+.|++++|.+.|.+..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445556666666666666544
No 443
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.16 E-value=2.4e+02 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013948 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFK 271 (433)
Q Consensus 244 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 271 (433)
.++..+..+|..+.+.|++.+|.. +|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~-Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAER-HFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHH-HHH
Confidence 467888888888888888888888 653
No 444
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=45.76 E-value=45 Score=23.93 Aligned_cols=16 Identities=44% Similarity=0.856 Sum_probs=7.7
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al 274 (433)
..|++++|+. +|.+++
T Consensus 20 ~~g~~~eAl~-~Y~~a~ 35 (77)
T smart00745 20 EAGDYEEALE-LYKKAI 35 (77)
T ss_pred HcCCHHHHHH-HHHHHH
Confidence 3455555555 444443
No 445
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.39 E-value=4.3e+02 Score=32.33 Aligned_cols=81 Identities=9% Similarity=0.076 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHH---hcC----CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 194 YSDAIELYSFAIA---LCG----NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 194 ~~~A~~~~~~al~---~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
..+-|-.+++++- .+| .-..+|.+.|.+....|+++.|..+.-+|.+.. -+.++...|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 4555555666542 233 237899999999999999999999999999887 6789999999999999999999
Q ss_pred HHHHHHHHhhC
Q 013948 267 EKGFKKALQLD 277 (433)
Q Consensus 267 ~~~~~~al~~~ 277 (433)
. .+++.+..+
T Consensus 1723 ~-~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 S-VLQEILSKN 1732 (2382)
T ss_pred H-HHHHHHHhh
Confidence 9 999999664
No 446
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=44.93 E-value=47 Score=23.85 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=8.1
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al 274 (433)
..|+|++|+. +|.+++
T Consensus 18 ~~g~y~eA~~-~Y~~ai 33 (75)
T cd02678 18 NAGNYEEALR-LYQHAL 33 (75)
T ss_pred HcCCHHHHHH-HHHHHH
Confidence 4455555555 544444
No 447
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.93 E-value=1.5e+02 Score=23.22 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=35.0
Q ss_pred HHccCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNN-AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
......++|...+. .++..++. ..+..-+...+...|+|++| +. +......+..--.++.+-.+.|--+++..
T Consensus 17 tG~HcH~EA~tIa~-wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll--~~~~~~~pdL~p~~AL~a~klGL~~~~e~ 90 (116)
T PF09477_consen 17 TGHHCHQEANTIAD-WLEQEGEMEEVVALIRLSSLMNRGDYQEA---LL--LPQCHCYPDLEPWAALCAWKLGLASALES 90 (116)
T ss_dssp HTTT-HHHHHHHHH-HHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HH--HHTTS--GGGHHHHHHHHHHCT-HHHHHH
T ss_pred hhhHHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HH--hcccCCCccHHHHHHHHHHhhccHHHHHH
Confidence 33344566654443 34444432 23333345556666777666 11 22222333333445556666666666666
Q ss_pred HHHHH
Q 013948 268 KGFKK 272 (433)
Q Consensus 268 ~~~~~ 272 (433)
++.+
T Consensus 91 -~l~r 94 (116)
T PF09477_consen 91 -RLTR 94 (116)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5553
No 448
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=44.52 E-value=2.1e+02 Score=29.44 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-----DPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
.+|.-|+-.+-..-++.|.. .-..++..|.+|+.. +-.+...|..+|-.+++.++|.+|+
T Consensus 274 ~~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~ 338 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREAL 338 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHH
T ss_pred hhCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHH
Confidence 35777777777776666642 123445566666554 3446678888999999999999999
Q ss_pred HHHHHHHHhh------CCCCHHHHHHHHHH
Q 013948 267 EKGFKKALQL------DPNNEAVKENIRMA 290 (433)
Q Consensus 267 ~~~~~~al~~------~p~~~~~~~~l~~~ 290 (433)
. .+..+-.. ..++.++|..+-.+
T Consensus 339 ~-~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 339 R-SWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp H-HHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 9 77776532 24566666665444
No 449
>PRK11619 lytic murein transglycosylase; Provisional
Probab=43.78 E-value=4.2e+02 Score=28.08 Aligned_cols=125 Identities=6% Similarity=-0.161 Sum_probs=80.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 183 CQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 183 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
.++..-....+.+.|...+.+......-+ ..++..+|.-....+...+|...+..+..... +...+-....+...
T Consensus 246 ~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~ 324 (644)
T PRK11619 246 AVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHH
Confidence 34444456677888998888765544333 23344444444443325677888887654432 22233333334458
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSS 309 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 309 (433)
.++++.... ++...-..........+++|+++...|+.++|...+..+..
T Consensus 325 ~~dw~~~~~-~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 325 TGDRRGLNT-WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ccCHHHHHH-HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899988888 87775443345678899999998889999999888777643
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.69 E-value=2.6e+02 Score=25.65 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHH----------------HhcCCCHHHHHH
Q 013948 154 SRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAI----------------ALCGNNAVYYSN 217 (433)
Q Consensus 154 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----------------~~~p~~~~~~~~ 217 (433)
..+.++++.-. ..+. .+...+..+..+|..+.+.|++.+|..+|-.+- .-.|.....+..
T Consensus 70 ~~fi~~ai~WS-~~~~---~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~ 145 (260)
T PF04190_consen 70 KKFIKAAIKWS-KFGS---YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIA 145 (260)
T ss_dssp HHHHHHHHHHH-HTSS----TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHH
T ss_pred HHHHHHHHHHH-ccCC---CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 34455555544 2211 223447889999999999999999998873221 224556666666
Q ss_pred HHH-HHHHhhcHHHHHHHHHHHHhc----CCC-----------cHHHHHH-HHHHHHHcCC---HHHHHHHHHHHHHhhC
Q 013948 218 RAA-AYTQIHQYAEAVRDCLKSIDI----DPN-----------YSKAYSR-LGLAYYAQGN---YNDAIEKGFKKALQLD 277 (433)
Q Consensus 218 la~-~~~~~~~~~~A~~~~~~al~~----~p~-----------~~~~~~~-lg~~~~~~g~---~~~A~~~~~~~al~~~ 277 (433)
+|. .|.-.++...|...+..-++. +|+ .|...+. +-..-.+.++ |..=.+ .|+..|+.+
T Consensus 146 RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~-~Y~~~L~rd 224 (260)
T PF04190_consen 146 RAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCE-KYKPSLKRD 224 (260)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHH-HTHH---HH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHH-HhCcccccc
Confidence 664 466678888888877666655 332 2211111 1111122233 333334 556666677
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 013948 278 PNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 278 p~~~~~~~~l~~~~~~~~ 295 (433)
|........+|..|....
T Consensus 225 ~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 225 PSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCC
Confidence 777778888888887654
No 451
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=43.56 E-value=1.2e+02 Score=23.43 Aligned_cols=48 Identities=19% Similarity=0.056 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
.....|.+-...|++..|.+...++-+..+..+-.+..-+.+-..+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344556777788888888888888877766656666666666666654
No 452
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=43.12 E-value=52 Score=19.02 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHH
Q 013948 261 NYNDAIEKGFKKAL 274 (433)
Q Consensus 261 ~~~~A~~~~~~~al 274 (433)
+..+|+. +|+++.
T Consensus 20 d~~~A~~-~~~~Aa 32 (36)
T smart00671 20 DLEKALE-YYKKAA 32 (36)
T ss_pred CHHHHHH-HHHHHH
Confidence 4555555 555544
No 453
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.13 E-value=67 Score=34.00 Aligned_cols=111 Identities=19% Similarity=0.115 Sum_probs=84.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM--QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 224 (433)
.+++..+.--|..++.+.|.+ +...+......+-+++ ..++|..++.-..-++...|....+++.++.+|..
T Consensus 66 K~d~~~~~~~~~~~~~llp~~------~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 66 KRDYEGAMFRYDCAIKLLPKD------HHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhhhhccchhhhhhheecccc------chhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 466777766677777777754 3444666666666665 45799999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 263 (433)
.+.++-|++...-.....|.+..+.-.......-...++
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d 178 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKD 178 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcC
Confidence 999999999988888999999665554444444333333
No 454
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=41.96 E-value=55 Score=31.79 Aligned_cols=47 Identities=17% Similarity=0.058 Sum_probs=40.1
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 237 (433)
....-+|+-.++.++..+|.+..+...+..+|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34567788888999999999999999999999999999999988864
No 455
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=41.93 E-value=53 Score=31.98 Aligned_cols=20 Identities=15% Similarity=-0.089 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHhhcCCCCCC
Q 013948 37 GLEVARECLTEVFKLDSPSA 56 (433)
Q Consensus 37 ~~e~A~~~~~kAl~ldP~~~ 56 (433)
=|+.|++-.+-.++.-|++.
T Consensus 129 fFdaAlER~e~Gl~~~p~s~ 148 (404)
T PF12753_consen 129 FFDAALERVELGLEKFPDSI 148 (404)
T ss_dssp HHHHHHHHHHHGGSSS--H-
T ss_pred HHHHHHHHHHhhhhcCCCch
Confidence 34555555555555555553
No 456
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.61 E-value=3.6e+02 Score=26.62 Aligned_cols=96 Identities=15% Similarity=0.074 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--------CC
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID---PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--------NN 280 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--------~~ 280 (433)
..++..+|.-|...|+.+.|++.|-++-..- ......+.++-.+-...|+|..-.. +-.+|...-. -.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~s-y~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLS-YISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhh-HHHHHHhCchhhhhHHHhcC
Confidence 3578889999999999999999999954432 2235677777778888899888777 6666655410 01
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 281 EAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
+.+...-|.+...++++..|..++..+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2345556667777788888877765444
No 457
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=40.67 E-value=70 Score=18.20 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013948 198 IELYSFAIALCGNNAVYYSNRAAAYT 223 (433)
Q Consensus 198 ~~~~~~al~~~p~~~~~~~~la~~~~ 223 (433)
++....++..+|.+..+|..+-.++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 34445555556666655555544443
No 458
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=40.54 E-value=64 Score=23.61 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=7.2
Q ss_pred cCHHHHHHHHHHHHH
Q 013948 192 QQYSDAIELYSFAIA 206 (433)
Q Consensus 192 ~~~~~A~~~~~~al~ 206 (433)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444445555544443
No 459
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=40.50 E-value=2.4e+02 Score=28.12 Aligned_cols=113 Identities=17% Similarity=0.251 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC----CHHHHHHH----------------H-HHHHHhhcHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN----NAVYYSNR----------------A-AAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l----------------a-~~~~~~~~~~~A~~~~~ 236 (433)
....+.-|...+..++|.+++..+++||+..-. .+.+..+. | .-...-|.+-+-..+..
T Consensus 31 ~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~ 110 (471)
T KOG4459|consen 31 HELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLR 110 (471)
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHH
Confidence 556777788888899999999999999865210 00111100 0 00011122222223333
Q ss_pred HHHhc---CCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 237 KSIDI---DPNY----------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 237 ~al~~---~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
++..- .|.. -..+..|=.+|++.|++.+|++ .-...+-.+|++..+..++..-.
T Consensus 111 rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~-aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 111 RCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVA-AAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred HHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHH-hcceeeecCCcHHHHHHHHHHHH
Confidence 33222 1111 2456677888899999999999 88888888898888777766433
No 460
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=39.51 E-value=78 Score=22.66 Aligned_cols=17 Identities=41% Similarity=0.729 Sum_probs=9.1
Q ss_pred HccCHHHHHHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIA 206 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~ 206 (433)
..|++++|+.+|.++++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34555555555555543
No 461
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=38.91 E-value=74 Score=17.95 Aligned_cols=17 Identities=12% Similarity=-0.083 Sum_probs=6.8
Q ss_pred HHHHHhhcHHHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~ 236 (433)
.++.+.|+++.|...++
T Consensus 9 ~a~~~~g~~~~a~~~~~ 25 (34)
T PF13812_consen 9 RACAKAGDPDAALQLFD 25 (34)
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 33334444444444433
No 462
>PF13041 PPR_2: PPR repeat family
Probab=38.60 E-value=1e+02 Score=19.60 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
.|.-+-..+.+.|++++|++.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3344444444444444444444444433
No 463
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=38.58 E-value=1.5e+02 Score=28.72 Aligned_cols=49 Identities=14% Similarity=0.013 Sum_probs=43.4
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFA 204 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 204 (433)
+.+.+-+|+.+++.++...|.+ ......+..+|...|-...|...|...
T Consensus 195 ~~~~l~~Ai~lLE~~l~~s~~n----------~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 195 DSEYLLQAIALLEHALKKSPHN----------YQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred CHHHHHHHHHHHHHHHHcCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4567889999999999999988 889999999999999999999999653
No 464
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=38.18 E-value=75 Score=25.43 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY 214 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 214 (433)
....+|..+...|++++|..+|-+|+...|+-..+
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 34457888888999999999999999998865443
No 465
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=37.62 E-value=55 Score=19.34 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 013948 149 QVDKASRIFHDAINEMEK 166 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~ 166 (433)
+++.|..+|++.+...|.
T Consensus 2 E~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE 19 (32)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 578999999999999876
No 466
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=37.60 E-value=11 Score=38.78 Aligned_cols=96 Identities=17% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH--HhcCC-CHHHHHHHHHHHHHhhcHHHHHHHHHH--HHhcCCC-cHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAI--ALCGN-NAVYYSNRAAAYTQIHQYAEAVRDCLK--SIDIDPN-YSKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~--al~~~p~-~~~~~~~ 251 (433)
......-+..+...|++..|...+.+.- .+.|. ........|.+....|++++|+..+.. ...+.+. ....+..
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l 103 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQL 103 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHH
Confidence 4455666778889999999999888765 23333 245666778889999999999998874 2222222 2345556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 013948 252 LGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 252 lg~~~~~~g~~~~A~~~~~~~al 274 (433)
++.++...|++-+|.. .+-..-
T Consensus 104 ~A~a~~~~~~~l~Aa~-~~i~l~ 125 (536)
T PF04348_consen 104 RAQAYEQQGDPLAAAR-ERIALD 125 (536)
T ss_dssp -----------------------
T ss_pred HHHHHHhcCCHHHHHH-HHHHHh
Confidence 7888888888888877 554433
No 467
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=37.37 E-value=1.7e+02 Score=32.82 Aligned_cols=21 Identities=5% Similarity=0.264 Sum_probs=11.3
Q ss_pred cCCcHHHHHHHHHHHhhcCCC
Q 013948 392 ENMPEDITGALRSMMEMFSGP 412 (433)
Q Consensus 392 ~~~~~~~~~a~~~~~~~~~~~ 412 (433)
......+..++..+.+..+..
T Consensus 1200 ~eqa~~Lq~~f~ev~~~i~~~ 1220 (1265)
T KOG1920|consen 1200 DEQARALQKAFDEVLQAIQAS 1220 (1265)
T ss_pred cHHHHHHHHHHHHHHHHHHhh
Confidence 344445666666655555443
No 468
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=37.07 E-value=91 Score=22.34 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=9.8
Q ss_pred HHccCHHHHHHHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIA 206 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~ 206 (433)
-..|++++|+.+|.++++
T Consensus 17 D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 17 DNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 344556555555555544
No 469
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=36.70 E-value=1.6e+02 Score=21.28 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=7.1
Q ss_pred HccCHHHHHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAI 205 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al 205 (433)
..|+|++|+.+|.++|
T Consensus 18 ~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 18 QEGRFQEALVCYQEGI 33 (77)
T ss_pred HhccHHHHHHHHHHHH
Confidence 3344444444444443
No 470
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.62 E-value=2.2e+02 Score=22.90 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhhcHHHHH
Q 013948 155 RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--CGNNAVYYSNRAAAYTQIHQYAEAV 232 (433)
Q Consensus 155 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~ 232 (433)
.+++++++...++ ....+++.....|...+... ++ ..++|...... ....+..|...|..+...|++.+|.
T Consensus 47 ~lLerc~~~f~~~-~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~ 119 (125)
T smart00777 47 TLLERCIRYFEDD-ERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKAD 119 (125)
T ss_pred HHHHHHHHHhhhh-hhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 4445555443322 12223344556666666543 22 44555554433 3445667777788888888888888
Q ss_pred HHHHH
Q 013948 233 RDCLK 237 (433)
Q Consensus 233 ~~~~~ 237 (433)
+.|+.
T Consensus 120 ~iy~~ 124 (125)
T smart00777 120 EVYQL 124 (125)
T ss_pred HHHHc
Confidence 87764
No 471
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.65 E-value=4e+02 Score=25.42 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc--CCCcH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN--------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI--DPNYS 246 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~ 246 (433)
.......+|.+|.+.++|..|...+. ++..+... ...+..+|.+|.+.++..+|..+..++--+ +..|.
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCH
Confidence 35667789999999999999987765 34444311 356888999999999999999988876332 34555
Q ss_pred HHHHHH----HHHHHHcCCHHHHHHHHHHHHH
Q 013948 247 KAYSRL----GLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 247 ~~~~~l----g~~~~~~g~~~~A~~~~~~~al 274 (433)
.....+ |.++-..++|-+|.. .|.+..
T Consensus 181 ~Lqie~kvc~ARvlD~krkFlEAAq-rYyels 211 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKRKFLEAAQ-RYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 555544 444455677777777 555544
No 472
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.63 E-value=1.1e+02 Score=29.44 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHhhcHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--------NNAVYYSNRAAAYTQIHQYAEAVRDC 235 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~ 235 (433)
..-+...|+-.+.++++++|...|..|..+.. ++..+++.+|..+++.++.+..+-..
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677789999999999999999999987743 34678888999999988877655433
No 473
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=35.58 E-value=4.9e+02 Score=28.20 Aligned_cols=117 Identities=7% Similarity=-0.069 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ--- 224 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--- 224 (433)
+.-++-+..++.-+.+++.+ ...+..|-.++...|++++-...=.++.++.|..+..|.....-...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~----------~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~ 162 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYK----------YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQ 162 (881)
T ss_pred ccchhHHHHHHHHhcccccc----------hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc
Confidence 34444455555555554444 55666677788888988887777777778888888888776544332
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHhh
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA-------YYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-------~~~~g~~~~A~~~~~~~al~~ 276 (433)
.+.-.++...|++++.-. .++..|...+.- +...++++.... .|.+++..
T Consensus 163 s~~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~-vf~ral~s 219 (881)
T KOG0128|consen 163 SEERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERS-VFERALRS 219 (881)
T ss_pred CcchhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhH-HHHHHHhh
Confidence 346677888888888753 333444443333 344566777777 78888764
No 474
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.19 E-value=2.5e+02 Score=29.15 Aligned_cols=57 Identities=12% Similarity=-0.058 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCL 236 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 236 (433)
+...+..+..+...+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 42 SLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 566777788888889999999999999999988 677788888889998888888877
No 475
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.32 E-value=4.6e+02 Score=25.71 Aligned_cols=52 Identities=6% Similarity=-0.038 Sum_probs=36.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH--HHccCHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRV--MQSQQYSDAIELYSF 203 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~--~~~~~~~~A~~~~~~ 203 (433)
.++|..|...|.++++..+.. ........+..+..+| ...-++++|.+.+++
T Consensus 143 ~~dy~aA~~~~~~L~~r~l~~-----~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 143 AFDYLFAHARLETLLRRLLSA-----VNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred hcChHHHHHHHHHHHhcccCh-----hhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 489999999999999875432 1122344555555554 567789999999986
No 476
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=34.00 E-value=1.1e+02 Score=21.80 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=10.1
Q ss_pred HHccCHHHHHHHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIA 206 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~ 206 (433)
-..|++++|+.+|..+++
T Consensus 17 D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 17 DEDGNYEEALELYKEALD 34 (75)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 344666666666655554
No 477
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=33.96 E-value=1.9e+02 Score=23.51 Aligned_cols=43 Identities=5% Similarity=-0.077 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
++..+-..++.+-+.+.|..+|...++.+|++..++..+-..+
T Consensus 78 aLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 78 ALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 3333444455666778899999999999999988887665544
No 478
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=32.78 E-value=1.4e+02 Score=23.97 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=12.8
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPN 244 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~ 244 (433)
.+|..+...|++++|..+|-+|+...|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444443
No 479
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=31.97 E-value=4.7e+02 Score=25.19 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=80.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----CCC--HHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-----GNN--AVYYSNR 218 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~--~~~~~~l 218 (433)
+.++|.+|+.+....+.-..+-+ +.....+.+..-...|+...+..+|...+..|-... |.. +.+=..-
T Consensus 140 d~~~YteAlaL~~~L~rElKKlD----DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqS 215 (411)
T KOG1463|consen 140 DTKRYTEALALINDLLRELKKLD----DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQS 215 (411)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc----cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhc
Confidence 35677777776666655443321 223345566666677777777777777666654321 111 1122223
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCC---CcHHHHHH---HHHHHHHcCCHHH--HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDP---NYSKAYSR---LGLAYYAQGNYND--AIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~---lg~~~~~~g~~~~--A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
|.++..-.+|.-|..+|-.|++-.. ++..+... +-.|-..++..++ ++- .-+.+++....+..++..++.+
T Consensus 216 GIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll-s~K~~l~y~g~~i~AmkavAeA 294 (411)
T KOG1463|consen 216 GILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL-SAKLALKYAGRDIDAMKAVAEA 294 (411)
T ss_pred cceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH-hhHHHHhccCcchHHHHHHHHH
Confidence 4444555677777777777766532 12222222 2222233344443 333 3445666666667777766666
Q ss_pred HH--HHHHHHHhccccc
Q 013948 291 EQ--KLREERQRTGWDQ 305 (433)
Q Consensus 291 ~~--~~~~~~~a~~~~~ 305 (433)
+. .+.+++.|...+.
T Consensus 295 ~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 295 FGNRSLKDFEKALADYK 311 (411)
T ss_pred hcCCcHHHHHHHHHHhH
Confidence 54 2455555555443
No 480
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.98 E-value=1.1e+02 Score=26.50 Aligned_cols=48 Identities=6% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHH
Q 013948 187 RVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDC 235 (433)
Q Consensus 187 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 235 (433)
++++.|.|++|.+.+++... +|++......|..+-.+...+..-++.|
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnF 167 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNF 167 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhc
No 481
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.89 E-value=1.6e+02 Score=28.32 Aligned_cols=64 Identities=11% Similarity=-0.079 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGN---NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-KAYSRLGLAYY 257 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~ 257 (433)
-++....+...+..-|+ .+.+|..+|.++...|.++..+..|++|+.....-. +....+..++.
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34555666666666665 468899999999999999999999999998876633 33333444443
No 482
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=30.53 E-value=5.8e+02 Score=25.72 Aligned_cols=97 Identities=14% Similarity=-0.006 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA-YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
-+|...-+.-.+..-.+.|...|.++-+..--...++..-|.+ +...|++.-|...|+-.+...|+.+......-..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3444444444455557778888887765432233333333333 456778888888888888888888766666666677
Q ss_pred HcCCHHHHHHHHHHHHHhh
Q 013948 258 AQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~ 276 (433)
..++-+.|.. .|++++..
T Consensus 478 ~inde~nara-LFetsv~r 495 (660)
T COG5107 478 RINDEENARA-LFETSVER 495 (660)
T ss_pred HhCcHHHHHH-HHHHhHHH
Confidence 7888888888 88877653
No 483
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=29.98 E-value=79 Score=30.82 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
...|+.++++|.. .+.|..|..+|.++..+|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 3456666666655 4556666666666666654
No 484
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=28.92 E-value=1.4e+02 Score=18.96 Aligned_cols=32 Identities=16% Similarity=-0.129 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHH
Q 013948 200 LYSFAIALCGNNAVYYSNRAAAYTQIHQYAEA 231 (433)
Q Consensus 200 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 231 (433)
.|.++|-.+|++...+.-.|..+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 45566777777777777777777777776543
No 485
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.91 E-value=5e+02 Score=24.47 Aligned_cols=94 Identities=13% Similarity=0.020 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKE 285 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~ 285 (433)
.++|.++|.-|.+.++.+.+.+.+.+.++..- +-.-...++|.+|..+.-.++.++ .....++... +++-.+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE-~~~~~iEkGg-DWeRrN 192 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLE-VADDIIEKGG-DWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHH-HHHHHHHhCC-CHHhhh
Confidence 67899999999999999999888877766432 233456677888877777777777 6666666543 332222
Q ss_pred ----HHHHHHHHHHHHHHhccccccc
Q 013948 286 ----NIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 286 ----~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
..|.-.....++.+|.......
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2233333444555555544333
No 486
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=28.82 E-value=5e+02 Score=24.46 Aligned_cols=101 Identities=10% Similarity=-0.008 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH---
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS--- 246 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--- 246 (433)
...+++.++|..|.+.++.+.+.+.+.+.++..-. -.-....+|.+|-.+.=.++.++..+..++..-+..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 34889999999999999999999988887764322 133456678888777777888888888888866543
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 013948 247 KAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277 (433)
Q Consensus 247 ~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~ 277 (433)
......|.-.....+|.+|.. .+...+.-.
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~-Ll~d~l~tF 222 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAI-LLSDILPTF 222 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHH-HHHHHhccc
Confidence 233345777777888999988 887776543
No 487
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=28.63 E-value=2.7e+02 Score=25.18 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=17.6
Q ss_pred CchhHHHHHHHHHHhhcCCCCCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSA 56 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~ 56 (433)
..++|++.+.+.+++++.+|+-.
T Consensus 13 q~eRy~dmv~~mk~~~~~~~eLt 35 (236)
T PF00244_consen 13 QAERYDDMVEYMKQLIEMNPELT 35 (236)
T ss_dssp HTTHHHHHHHHHHHHHHTSS---
T ss_pred HhcCHHHHHHHHHHHHccCCCCC
Confidence 35789999999999999977654
No 488
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.52 E-value=5.4e+02 Score=24.80 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013948 153 ASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFA 204 (433)
Q Consensus 153 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 204 (433)
+...|+++++..|+.. .....-...|.+++..++|.+....|..+
T Consensus 40 ~~~~y~Q~~q~~kk~~-------~~il~~L~~Gl~a~~~~dya~S~~~ldAa 84 (449)
T COG3014 40 PKKAYEQSKQFTKKKK-------NALLWDLQNGLSALYARDYATSLGVLDAA 84 (449)
T ss_pred chhHHHHHHHhhhhhh-------HHHHHhhhhhHHHHHhhhHHHhhhHHHHH
Confidence 3345666666665542 11222234577777777777776666544
No 489
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=28.51 E-value=1.5e+02 Score=21.39 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=8.9
Q ss_pred HccCHHHHHHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIA 206 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~ 206 (433)
..|+|++|+.+|..+++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34555555555555544
No 490
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=28.01 E-value=6.1e+02 Score=25.24 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC--------HHH--------HHHHHHHHH-Hhhc-----HHHHHH----
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNN--------AVY--------YSNRAAAYT-QIHQ-----YAEAVR---- 233 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~--------~~~la~~~~-~~~~-----~~~A~~---- 233 (433)
.....|.-++..|+|.+|+..|+..|..-|-. ..+ -|-+|.... ..+. .++...
T Consensus 206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL 285 (422)
T PF06957_consen 206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL 285 (422)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34456777889999999999999998653311 111 222332221 1111 112211
Q ss_pred -HHHHHHhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 234 -DCLKSIDIDPNYSKAYSRLGLA-YYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 234 -~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
.|-.-..+.|.+...-++.|.. .++.++|..|.. ..++.|++.|....
T Consensus 286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~-FArRLLel~p~~~~ 335 (422)
T PF06957_consen 286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAAS-FARRLLELNPSPEV 335 (422)
T ss_dssp HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHH-HHHHHHCT--SCHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHcCCCHHH
Confidence 2222223344444444444443 467899999999 99999999997654
No 491
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=27.23 E-value=99 Score=18.63 Aligned_cols=27 Identities=11% Similarity=-0.110 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhcH---HHHHHHHHHHHh
Q 013948 214 YYSNRAAAYTQIHQY---AEAVRDCLKSID 240 (433)
Q Consensus 214 ~~~~la~~~~~~~~~---~~A~~~~~~al~ 240 (433)
..+++|+++.+.... .+++..++..++
T Consensus 3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~ 32 (35)
T PF14852_consen 3 TQFNYAWGLVKSNNREDQQEGIALLEELYR 32 (35)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHCC
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 455666666665533 344445444443
No 492
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.83 E-value=5.7e+02 Score=24.45 Aligned_cols=90 Identities=16% Similarity=0.169 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC--C------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhhCCCCH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP--N------YSKAYSRLGLAYYAQGNYNDAIEKGFKKA--LQLDPNNE 281 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~a--l~~~p~~~ 281 (433)
..+...+|.+|.+.++|..|-..+.-. .++. . -...+..+|..|...++..+|.. +..++ +..+..|+
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~-~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEA-YINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHhhhcccCH
Confidence 457888999999999999987766432 2221 1 23567789999999999999998 77775 33445777
Q ss_pred HHHHHHHHHHHH----HHHHHHhccc
Q 013948 282 AVKENIRMAEQK----LREERQRTGW 303 (433)
Q Consensus 282 ~~~~~l~~~~~~----~~~~~~a~~~ 303 (433)
.....+..|+.+ .+++-+|...
T Consensus 181 ~Lqie~kvc~ARvlD~krkFlEAAqr 206 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKRKFLEAAQR 206 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666654 4454444443
No 493
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=26.82 E-value=1.6e+02 Score=21.19 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=9.7
Q ss_pred cCHHHHHHHHHHHHHh
Q 013948 192 QQYSDAIELYSFAIAL 207 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~ 207 (433)
|+|++|..+|..+++.
T Consensus 20 ~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 20 GDYEAAFEFYRAGVDL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5666666666666543
No 494
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=26.78 E-value=2.6e+02 Score=26.63 Aligned_cols=32 Identities=9% Similarity=-0.092 Sum_probs=18.1
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 013948 206 ALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLK 237 (433)
Q Consensus 206 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 237 (433)
...|+....++.+|.-.+.+|+|..|-.++-.
T Consensus 123 nf~~e~i~~lykyakfqyeCGNY~gAs~yLY~ 154 (432)
T KOG2758|consen 123 NFTPERIETLYKYAKFQYECGNYSGASDYLYF 154 (432)
T ss_pred CCCHHHHHHHHHHHHHHHhccCcccHHHHHHH
Confidence 33445555666666666666666666554433
No 495
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=25.11 E-value=2.1e+02 Score=30.84 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=75.1
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCCHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY---AQGNYNDAI 266 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~ 266 (433)
..+.-++=+..++.-+.+++.+...+..|-.++.+.|++++-...-.+.-++.|.++..|.....-.. ..+.-.++.
T Consensus 91 ~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 44556667778888888899999999999999999999999888888888888999888887654433 236677777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 267 EKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
. .|++++.- -+++..|...+.-
T Consensus 171 ~-~~ekal~d-y~~v~iw~e~~~y 192 (881)
T KOG0128|consen 171 E-LFEKALGD-YNSVPIWEEVVNY 192 (881)
T ss_pred H-HHHHHhcc-cccchHHHHHHHH
Confidence 7 88888863 3556666665543
No 496
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=24.79 E-value=3.4e+02 Score=21.12 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=7.4
Q ss_pred HHHHHHcCCHHHHHH
Q 013948 253 GLAYYAQGNYNDAIE 267 (433)
Q Consensus 253 g~~~~~~g~~~~A~~ 267 (433)
...+.+.|+|++|..
T Consensus 46 lsSLmNrG~Yq~Al~ 60 (115)
T TIGR02508 46 LSSLMNRGDYQSALQ 60 (115)
T ss_pred HHHHHccchHHHHHH
Confidence 334445555555554
No 497
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=24.50 E-value=5.3e+02 Score=23.27 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 013948 229 AEAVRDCLKSIDI-----DPNYS---KAYSRLGLAYY-AQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 229 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~-~~g~~~~A~~~~~~~al~ 275 (433)
+.|...|++|+.+ .|.+| ...++.+..|+ -.|+.++|+. ..++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~-ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIE-IAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHH-HHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHH-HHHHHHH
Confidence 5566666666553 56665 33344444443 3788888888 7666653
No 498
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.43 E-value=2e+02 Score=29.02 Aligned_cols=45 Identities=20% Similarity=0.086 Sum_probs=23.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
..+|.-.+.+|+|.-+.+.+.+++-.+|++..+....|.++.++|
T Consensus 456 l~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLg 500 (655)
T COG2015 456 LELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLG 500 (655)
T ss_pred HHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhh
Confidence 334444455555555555555555555555555555555555544
No 499
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.02 E-value=9.3e+02 Score=26.57 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------C-HHH--HHHHHHHHH------------HhhcHHHH--HHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGN-------N-AVY--YSNRAAAYT------------QIHQYAEA--VRDC 235 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~-~~~--~~~la~~~~------------~~~~~~~A--~~~~ 235 (433)
.-...|.-+...|++.+|++.|..+|-.-|- + ..+ +...+.-|. ..+..+.+ +..|
T Consensus 993 ~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaY 1072 (1202)
T KOG0292|consen 993 KKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAY 1072 (1202)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHH
Confidence 3445677778899999999999999865431 1 111 222221121 11223444 3344
Q ss_pred HHHHhcCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 236 LKSIDIDPNYSKAYSR-LGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 236 ~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
-.-..+.|-+.-.-.. --.++++++++..|.. ...+.+++.|..+.+...
T Consensus 1073 Ft~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~-fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1073 FTHCKLQPMHRILALRTAMNVFFKLKNLKTAAE-FARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHhhCCCChHHHHH
Confidence 4445566665543333 4456789999999999 899999999987765443
No 500
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.47 E-value=3e+02 Score=27.16 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
++..|-+.+.-.|+ -+| -.+.++++|.. ..+-+..|.+|+.+++|.+|+..|-.++..-...-...-..
T Consensus 237 sL~GLlR~H~lLgD-hQa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~ 312 (525)
T KOG3677|consen 237 SLLGLLRMHILLGD-HQA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRT 312 (525)
T ss_pred HHHHHHHHHHHhhh-hHh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 013948 253 GLAY-YAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRMAE 291 (433)
Q Consensus 253 g~~~-~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~ 291 (433)
+.++ .-.+++++--. .+.-++...|. +......++.++
T Consensus 313 ~y~~d~inKq~eqm~~-llai~l~~yPq~iDESi~s~l~Ek~ 353 (525)
T KOG3677|consen 313 TYQYDMINKQNEQMHH-LLAICLSMYPQMIDESIHSQLAEKY 353 (525)
T ss_pred hhhHhhhhhhHHHHHH-HHHHHHHhCchhhhHHHHHHHHHHh
Done!