Query 013948
Match_columns 433
No_of_seqs 358 out of 4478
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 20:05:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 8.9E-30 3E-34 248.2 10.6 224 147-387 148-380 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 6.9E-29 2.4E-33 241.8 9.1 244 147-407 114-367 (388)
3 3ieg_A DNAJ homolog subfamily 99.9 5.5E-27 1.9E-31 224.2 10.6 286 34-380 15-339 (359)
4 3hym_B Cell division cycle pro 99.9 3.4E-26 1.1E-30 216.5 15.5 217 147-380 69-303 (330)
5 2y4t_A DNAJ homolog subfamily 99.9 4.3E-26 1.5E-30 225.9 11.1 295 35-380 39-362 (450)
6 2h6f_A Protein farnesyltransfe 99.9 5.9E-26 2E-30 220.7 11.6 195 147-385 144-358 (382)
7 2pl2_A Hypothetical conserved 99.9 2E-24 6.9E-29 193.6 19.5 184 147-374 18-212 (217)
8 2pl2_A Hypothetical conserved 99.9 1.8E-23 6.2E-28 187.4 20.0 149 147-307 52-211 (217)
9 4eqf_A PEX5-related protein; a 99.9 9.9E-25 3.4E-29 210.5 12.5 216 148-380 79-314 (365)
10 1fch_A Peroxisomal targeting s 99.9 3.9E-25 1.3E-29 213.0 7.9 216 147-380 77-318 (368)
11 2xpi_A Anaphase-promoting comp 99.9 8E-24 2.8E-28 217.4 17.7 217 147-380 352-583 (597)
12 3vtx_A MAMA; tetratricopeptide 99.9 1.5E-23 5.2E-28 182.1 16.0 170 178-380 5-174 (184)
13 3u4t_A TPR repeat-containing p 99.9 9.1E-24 3.1E-28 194.7 14.9 202 147-380 50-254 (272)
14 3fp2_A TPR repeat-containing p 99.9 1.1E-24 3.9E-29 220.5 9.3 216 147-380 256-495 (537)
15 2xpi_A Anaphase-promoting comp 99.9 9.1E-24 3.1E-28 216.9 15.9 246 147-409 318-580 (597)
16 2h6f_A Protein farnesyltransfe 99.9 1.6E-23 5.5E-28 203.5 15.5 193 147-380 110-308 (382)
17 1fch_A Peroxisomal targeting s 99.9 4.3E-24 1.5E-28 205.6 10.8 217 147-376 111-359 (368)
18 3cv0_A Peroxisome targeting si 99.9 3.6E-24 1.2E-28 202.2 9.0 216 148-380 69-319 (327)
19 4g1t_A Interferon-induced prot 99.9 7.2E-25 2.5E-29 218.8 4.2 211 147-380 226-463 (472)
20 2y4t_A DNAJ homolog subfamily 99.9 3.3E-24 1.1E-28 212.3 8.8 244 147-407 73-357 (450)
21 3hym_B Cell division cycle pro 99.9 1.4E-23 4.7E-28 198.5 10.9 229 147-387 35-277 (330)
22 2gw1_A Mitochondrial precursor 99.9 1.8E-24 6.3E-29 217.4 4.6 250 147-407 202-477 (514)
23 4eqf_A PEX5-related protein; a 99.9 5.2E-23 1.8E-27 198.4 14.3 228 178-412 65-314 (365)
24 3ieg_A DNAJ homolog subfamily 99.9 1.6E-22 5.5E-27 193.1 16.6 244 147-407 50-334 (359)
25 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.9E-22 9.9E-27 184.6 16.7 225 146-380 17-248 (275)
26 3fp2_A TPR repeat-containing p 99.9 8.2E-24 2.8E-28 214.2 6.9 255 148-408 216-491 (537)
27 4gyw_A UDP-N-acetylglucosamine 99.9 9.1E-23 3.1E-27 213.1 14.7 174 174-380 5-178 (723)
28 2q7f_A YRRB protein; TPR, prot 99.9 2.7E-22 9.4E-27 181.2 15.1 192 146-380 35-226 (243)
29 4g1t_A Interferon-induced prot 99.9 2.8E-22 9.5E-27 200.0 16.1 221 147-380 151-405 (472)
30 2gw1_A Mitochondrial precursor 99.9 1.2E-22 4E-27 204.2 12.3 195 178-380 186-405 (514)
31 4abn_A Tetratricopeptide repea 99.9 7.2E-22 2.5E-26 198.0 16.2 183 147-373 115-318 (474)
32 3vtx_A MAMA; tetratricopeptide 99.9 6.2E-21 2.1E-25 165.5 19.3 149 147-306 18-166 (184)
33 3uq3_A Heat shock protein STI1 99.9 1.5E-21 5.2E-26 177.7 15.6 187 147-377 18-237 (258)
34 4i17_A Hypothetical protein; T 99.9 2E-21 6.7E-26 174.8 16.1 170 178-380 7-213 (228)
35 3urz_A Uncharacterized protein 99.9 7.1E-21 2.4E-25 169.2 18.0 169 178-380 4-190 (208)
36 3cv0_A Peroxisome targeting si 99.9 8E-23 2.8E-27 192.9 5.2 216 147-379 34-272 (327)
37 2ho1_A Type 4 fimbrial biogene 99.9 1.4E-20 4.7E-25 171.4 19.4 191 147-380 50-242 (252)
38 4ga2_A E3 SUMO-protein ligase 99.9 2.4E-21 8.3E-26 163.0 12.9 143 142-295 5-148 (150)
39 4abn_A Tetratricopeptide repea 99.9 1.9E-21 6.3E-26 195.0 14.1 198 149-387 83-299 (474)
40 3mkr_A Coatomer subunit epsilo 99.9 4.8E-21 1.6E-25 179.6 14.8 189 147-383 78-271 (291)
41 2q7f_A YRRB protein; TPR, prot 99.9 1.2E-20 4E-25 170.5 16.6 172 147-361 70-241 (243)
42 2ond_A Cleavage stimulation fa 99.9 8.5E-21 2.9E-25 179.2 15.8 194 148-380 78-274 (308)
43 4gco_A Protein STI-1; structur 99.8 5.4E-20 1.8E-24 150.0 17.1 117 174-291 9-125 (126)
44 4i17_A Hypothetical protein; T 99.8 1.5E-19 5.1E-24 162.5 20.2 192 147-358 20-225 (228)
45 4gyw_A UDP-N-acetylglucosamine 99.8 4.9E-20 1.7E-24 192.5 18.7 150 147-307 22-171 (723)
46 3uq3_A Heat shock protein STI1 99.8 1.7E-19 5.9E-24 164.0 19.9 157 147-307 51-233 (258)
47 2vq2_A PILW, putative fimbrial 99.8 3.9E-19 1.3E-23 158.1 20.2 192 147-380 21-215 (225)
48 2pzi_A Probable serine/threoni 99.8 7.2E-20 2.5E-24 191.4 16.4 190 146-379 403-608 (681)
49 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.2E-20 1.8E-24 169.4 13.3 202 147-370 56-269 (275)
50 3u4t_A TPR repeat-containing p 99.8 2.1E-20 7.3E-25 172.0 10.7 219 147-410 16-252 (272)
51 4a1s_A PINS, partner of inscut 99.8 4.5E-21 1.5E-25 187.6 5.7 227 147-379 99-375 (411)
52 3dra_A Protein farnesyltransfe 99.8 4.4E-19 1.5E-23 166.1 18.6 189 149-380 84-292 (306)
53 3sf4_A G-protein-signaling mod 99.8 7.2E-21 2.5E-25 185.1 6.2 227 147-379 60-339 (406)
54 3ro2_A PINS homolog, G-protein 99.8 8.2E-21 2.8E-25 179.0 6.4 227 147-379 56-335 (338)
55 2vq2_A PILW, putative fimbrial 99.8 2.6E-19 9E-24 159.2 15.6 202 175-409 5-212 (225)
56 1qqe_A Vesicular transport pro 99.8 8.8E-19 3E-23 164.1 19.0 202 147-380 50-273 (292)
57 2ho1_A Type 4 fimbrial biogene 99.8 5E-19 1.7E-23 161.0 16.7 199 178-409 37-239 (252)
58 3as5_A MAMA; tetratricopeptide 99.8 2.3E-19 8E-24 154.3 13.2 172 177-381 7-178 (186)
59 3nf1_A KLC 1, kinesin light ch 99.8 2.1E-19 7.3E-24 168.0 13.5 224 147-379 40-310 (311)
60 4ga2_A E3 SUMO-protein ligase 99.8 2.2E-20 7.4E-25 157.2 5.5 147 183-362 2-149 (150)
61 3qky_A Outer membrane assembly 99.8 2.3E-19 7.8E-24 164.9 12.0 188 178-380 15-228 (261)
62 3mkr_A Coatomer subunit epsilo 99.8 3.5E-20 1.2E-24 173.7 6.5 238 147-408 12-264 (291)
63 3edt_B KLC 2, kinesin light ch 99.8 2.3E-19 7.8E-24 165.1 11.8 223 146-377 13-282 (283)
64 1ouv_A Conserved hypothetical 99.8 5.2E-19 1.8E-23 163.5 13.9 207 147-380 19-255 (273)
65 3qky_A Outer membrane assembly 99.8 2.6E-18 8.8E-23 157.8 18.5 150 147-304 65-255 (261)
66 2ond_A Cleavage stimulation fa 99.8 1.1E-18 3.6E-23 164.8 16.2 218 151-411 33-273 (308)
67 2pzi_A Probable serine/threoni 99.8 2E-19 6.9E-24 188.1 12.2 194 178-408 394-602 (681)
68 3gyz_A Chaperone protein IPGC; 99.8 5.2E-19 1.8E-23 148.7 11.5 121 150-281 18-138 (151)
69 3urz_A Uncharacterized protein 99.8 4.2E-18 1.4E-22 151.2 17.9 148 147-306 17-182 (208)
70 1p5q_A FKBP52, FK506-binding p 99.8 4.1E-19 1.4E-23 169.9 12.0 145 147-302 126-285 (336)
71 3ulq_A Response regulator aspa 99.8 5.5E-19 1.9E-23 171.7 12.7 197 147-380 156-372 (383)
72 2vgx_A Chaperone SYCD; alterna 99.8 1.5E-18 5.1E-23 145.5 12.1 132 154-296 7-138 (148)
73 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.4E-18 1.2E-22 153.7 11.7 188 178-380 4-217 (225)
74 2xcb_A PCRH, regulatory protei 99.8 8.5E-18 2.9E-22 139.7 13.0 133 155-298 5-137 (142)
75 2yhc_A BAMD, UPF0169 lipoprote 99.7 4.1E-17 1.4E-21 146.6 17.6 154 147-308 17-211 (225)
76 4a1s_A PINS, partner of inscut 99.7 2.7E-19 9.1E-24 174.9 3.1 226 147-380 61-336 (411)
77 1qqe_A Vesicular transport pro 99.7 6.3E-18 2.1E-22 158.3 11.8 207 149-407 32-265 (292)
78 3q15_A PSP28, response regulat 99.7 4.3E-17 1.5E-21 158.1 17.7 193 147-376 154-365 (378)
79 3upv_A Heat shock protein STI1 99.7 6.6E-17 2.3E-21 131.0 16.1 116 177-293 3-124 (126)
80 3as5_A MAMA; tetratricopeptide 99.7 3.6E-17 1.2E-21 140.4 14.9 151 147-308 21-171 (186)
81 3ro2_A PINS homolog, G-protein 99.7 4E-19 1.4E-23 167.3 1.1 226 147-380 18-296 (338)
82 2r5s_A Uncharacterized protein 99.7 4E-18 1.4E-22 147.0 7.2 164 178-375 6-172 (176)
83 3sf4_A G-protein-signaling mod 99.7 8.6E-19 2.9E-23 170.3 3.3 226 147-380 22-300 (406)
84 3dss_A Geranylgeranyl transfer 99.7 1.1E-16 3.9E-21 150.7 17.3 188 148-380 88-308 (331)
85 2vsy_A XCC0866; transferase, g 99.7 3.7E-17 1.3E-21 167.4 14.4 151 147-308 2-155 (568)
86 1ouv_A Conserved hypothetical 99.7 4.8E-17 1.7E-21 150.1 13.3 188 178-380 6-219 (273)
87 3qou_A Protein YBBN; thioredox 99.7 3.9E-17 1.3E-21 152.5 12.8 165 178-375 117-283 (287)
88 4gco_A Protein STI-1; structur 99.7 2.2E-17 7.5E-22 134.4 9.2 122 203-357 4-125 (126)
89 2vsy_A XCC0866; transferase, g 99.7 9.1E-17 3.1E-21 164.5 15.8 163 191-386 2-168 (568)
90 3sz7_A HSC70 cochaperone (SGT) 99.7 3.8E-16 1.3E-20 132.8 16.8 124 175-299 8-133 (164)
91 3rkv_A Putative peptidylprolyl 99.7 2.7E-16 9.4E-21 133.4 15.8 124 177-301 10-152 (162)
92 3q7a_A Farnesyltransferase alp 99.7 6.2E-16 2.1E-20 146.3 19.7 206 149-379 104-335 (349)
93 3dra_A Protein farnesyltransfe 99.7 4E-16 1.4E-20 146.1 17.9 216 149-407 48-286 (306)
94 2hr2_A Hypothetical protein; a 99.7 9.7E-17 3.3E-21 133.9 11.9 119 177-296 10-151 (159)
95 2e2e_A Formate-dependent nitri 99.7 3.5E-16 1.2E-20 134.6 15.9 132 146-288 22-156 (177)
96 2fbn_A 70 kDa peptidylprolyl i 99.7 1.6E-16 5.6E-21 139.5 14.0 145 147-302 17-177 (198)
97 2c2l_A CHIP, carboxy terminus 99.7 2.3E-17 8E-22 153.6 8.7 191 178-379 4-202 (281)
98 4gcn_A Protein STI-1; structur 99.7 4.9E-16 1.7E-20 126.5 15.4 110 176-287 6-122 (127)
99 1dce_A Protein (RAB geranylger 99.7 2.3E-16 7.9E-21 160.8 16.6 200 150-380 45-271 (567)
100 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 5.8E-17 2E-21 161.5 11.8 146 147-303 247-407 (457)
101 2r5s_A Uncharacterized protein 99.7 1.3E-16 4.6E-21 137.4 12.4 148 147-306 19-169 (176)
102 2ooe_A Cleavage stimulation fa 99.7 4.7E-16 1.6E-20 157.8 16.3 190 151-379 303-495 (530)
103 2vyi_A SGTA protein; chaperone 99.7 1.8E-15 6.3E-20 121.9 16.6 122 175-297 9-130 (131)
104 3dss_A Geranylgeranyl transfer 99.7 1.1E-15 3.8E-20 143.9 17.4 191 148-380 43-271 (331)
105 2ifu_A Gamma-SNAP; membrane fu 99.7 1.4E-16 4.6E-21 150.3 10.7 205 147-380 4-227 (307)
106 1a17_A Serine/threonine protei 99.7 4.6E-15 1.6E-19 125.3 18.8 131 176-307 11-143 (166)
107 2lni_A Stress-induced-phosphop 99.7 9E-16 3.1E-20 124.5 13.8 122 173-295 11-132 (133)
108 3q49_B STIP1 homology and U bo 99.7 2.2E-15 7.6E-20 123.4 16.2 121 178-299 9-134 (137)
109 3qou_A Protein YBBN; thioredox 99.7 6.7E-16 2.3E-20 144.1 14.5 149 147-306 130-280 (287)
110 3edt_B KLC 2, kinesin light ch 99.7 2.2E-16 7.4E-21 145.1 10.7 127 147-276 56-198 (283)
111 3gyz_A Chaperone protein IPGC; 99.7 2.7E-17 9.1E-22 138.2 3.9 111 197-308 21-131 (151)
112 3ulq_A Response regulator aspa 99.7 4.4E-16 1.5E-20 151.1 13.1 230 147-409 116-369 (383)
113 2ifu_A Gamma-SNAP; membrane fu 99.6 3.3E-15 1.1E-19 140.8 17.3 154 147-306 49-220 (307)
114 1hxi_A PEX5, peroxisome target 99.6 2E-15 6.9E-20 121.7 12.9 103 179-282 18-120 (121)
115 1elw_A TPR1-domain of HOP; HOP 99.6 1.4E-14 4.9E-19 114.4 17.7 113 178-291 4-116 (118)
116 2ooe_A Cleavage stimulation fa 99.6 2.6E-15 8.8E-20 152.4 16.7 217 151-410 255-494 (530)
117 2xm6_A Protein corresponding t 99.6 7E-16 2.4E-20 155.0 12.3 206 147-379 200-435 (490)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.3E-15 7.8E-20 133.2 14.0 149 178-380 6-154 (213)
119 1hz4_A MALT regulatory protein 99.6 2.7E-15 9.2E-20 144.8 15.2 227 147-379 66-325 (373)
120 1na0_A Designed protein CTPR3; 99.6 2.3E-14 8E-19 114.3 17.5 117 178-295 9-125 (125)
121 2xm6_A Protein corresponding t 99.6 2.8E-15 9.6E-20 150.6 14.8 203 147-376 128-360 (490)
122 2fo7_A Synthetic consensus TPR 99.6 1.9E-14 6.4E-19 116.3 16.7 122 147-279 14-135 (136)
123 4f3v_A ESX-1 secretion system 99.6 2.7E-15 9.3E-20 137.5 12.7 215 35-287 19-247 (282)
124 1dce_A Protein (RAB geranylger 99.6 1.6E-14 5.3E-19 147.3 19.4 141 148-299 87-244 (567)
125 3nf1_A KLC 1, kinesin light ch 99.6 5.2E-16 1.8E-20 144.9 7.8 180 173-377 22-225 (311)
126 3e4b_A ALGK; tetratricopeptide 99.6 3E-15 1E-19 148.9 12.9 187 179-380 177-391 (452)
127 2fo7_A Synthetic consensus TPR 99.6 1.7E-14 5.8E-19 116.5 15.0 128 179-307 2-129 (136)
128 1elr_A TPR2A-domain of HOP; HO 99.6 3.2E-14 1.1E-18 114.7 15.7 118 178-297 4-128 (131)
129 4f3v_A ESX-1 secretion system 99.6 1.4E-16 4.9E-21 146.0 1.3 201 147-390 19-250 (282)
130 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.6E-14 8.8E-19 126.3 15.7 122 147-282 19-156 (213)
131 3q15_A PSP28, response regulat 99.6 1.4E-14 4.8E-19 140.3 14.8 195 147-373 114-329 (378)
132 2xev_A YBGF; tetratricopeptide 99.6 3.6E-14 1.2E-18 114.8 14.9 114 179-293 3-122 (129)
133 3rjv_A Putative SEL1 repeat pr 99.6 3.5E-15 1.2E-19 132.8 9.6 176 152-378 4-199 (212)
134 1ihg_A Cyclophilin 40; ppiase 99.6 3.7E-14 1.3E-18 137.1 17.5 125 178-303 223-363 (370)
135 2dba_A Smooth muscle cell asso 99.6 3.8E-14 1.3E-18 117.1 15.1 114 177-291 27-143 (148)
136 1hz4_A MALT regulatory protein 99.6 8.5E-15 2.9E-19 141.2 11.9 225 147-379 27-285 (373)
137 2vgx_A Chaperone SYCD; alterna 99.6 2.2E-15 7.6E-20 126.1 6.6 111 196-307 5-115 (148)
138 3e4b_A ALGK; tetratricopeptide 99.6 5.4E-15 1.8E-19 147.1 10.3 215 148-378 88-353 (452)
139 1p5q_A FKBP52, FK506-binding p 99.6 4.8E-16 1.6E-20 148.5 2.3 153 190-375 125-293 (336)
140 1xi4_A Clathrin heavy chain; a 99.6 1.1E-14 3.9E-19 155.9 12.8 283 32-410 1059-1344(1630)
141 1zu2_A Mitochondrial import re 99.6 2E-14 7E-19 119.5 11.6 101 190-291 14-135 (158)
142 1a17_A Serine/threonine protei 99.5 1.5E-13 5E-18 115.9 16.1 119 147-276 26-146 (166)
143 3q7a_A Farnesyltransferase alp 99.5 6.1E-14 2.1E-18 132.7 14.5 177 178-387 54-249 (349)
144 2qfc_A PLCR protein; TPR, HTH, 99.5 1.7E-13 5.7E-18 128.0 16.5 172 178-376 75-266 (293)
145 1wao_1 Serine/threonine protei 99.5 1.6E-14 5.3E-19 144.6 9.5 128 177-305 5-134 (477)
146 3upv_A Heat shock protein STI1 99.5 3.6E-13 1.2E-17 108.7 15.9 103 147-259 17-125 (126)
147 2hr2_A Hypothetical protein; a 99.5 3.4E-14 1.2E-18 118.5 9.0 112 211-382 10-137 (159)
148 2xcb_A PCRH, regulatory protei 99.5 1.7E-14 5.7E-19 119.6 7.1 109 199-308 5-113 (142)
149 2kck_A TPR repeat; tetratricop 99.5 7.4E-14 2.5E-18 109.3 10.2 103 178-281 6-111 (112)
150 1zu2_A Mitochondrial import re 99.5 1.4E-13 4.7E-18 114.5 11.6 90 147-246 15-125 (158)
151 3k9i_A BH0479 protein; putativ 99.5 2E-14 6.9E-19 114.8 6.1 99 190-289 2-103 (117)
152 4gcn_A Protein STI-1; structur 99.5 6.8E-14 2.3E-18 113.7 9.1 110 210-379 6-115 (127)
153 3rjv_A Putative SEL1 repeat pr 99.5 9.6E-14 3.3E-18 123.3 10.8 145 147-308 31-195 (212)
154 2vyi_A SGTA protein; chaperone 99.5 4.6E-13 1.6E-17 107.6 13.7 106 147-262 25-130 (131)
155 1wao_1 Serine/threonine protei 99.5 7.2E-14 2.5E-18 139.8 10.9 133 137-280 9-154 (477)
156 2if4_A ATFKBP42; FKBP-like, al 99.5 3.7E-14 1.3E-18 135.4 8.3 129 177-306 178-324 (338)
157 2e2e_A Formate-dependent nitri 99.5 6.8E-14 2.3E-18 120.1 9.1 118 188-306 20-140 (177)
158 2qfc_A PLCR protein; TPR, HTH, 99.5 5.3E-13 1.8E-17 124.6 15.7 156 147-307 88-263 (293)
159 3sz7_A HSC70 cochaperone (SGT) 99.5 6.2E-13 2.1E-17 112.7 14.5 102 147-258 24-125 (164)
160 2fbn_A 70 kDa peptidylprolyl i 99.5 8.3E-13 2.9E-17 115.6 15.6 128 147-274 51-184 (198)
161 2c2l_A CHIP, carboxy terminus 99.5 3E-13 1E-17 125.6 13.0 149 147-308 17-197 (281)
162 3k9i_A BH0479 protein; putativ 99.5 1.3E-13 4.5E-18 110.0 9.1 102 147-258 3-107 (117)
163 3rkv_A Putative peptidylprolyl 99.5 9.1E-13 3.1E-17 111.4 14.8 119 147-265 24-151 (162)
164 2lni_A Stress-induced-phosphop 99.5 1.1E-12 3.8E-17 106.0 14.2 105 147-261 29-133 (133)
165 1b89_A Protein (clathrin heavy 99.5 4.1E-14 1.4E-18 137.0 6.4 196 146-408 73-269 (449)
166 3u3w_A Transcriptional activat 99.5 1.5E-13 5E-18 128.3 10.0 172 178-376 75-266 (293)
167 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1E-14 3.6E-19 145.1 1.8 147 190-369 246-407 (457)
168 1hxi_A PEX5, peroxisome target 99.5 9.9E-13 3.4E-17 105.8 13.2 91 147-247 30-120 (121)
169 3u3w_A Transcriptional activat 99.4 4E-13 1.4E-17 125.3 12.1 157 147-308 88-264 (293)
170 2if4_A ATFKBP42; FKBP-like, al 99.4 1.6E-13 5.6E-18 131.0 7.4 136 146-282 191-334 (338)
171 1na0_A Designed protein CTPR3; 99.4 1.2E-11 4E-16 98.3 16.8 104 147-260 22-125 (125)
172 1elw_A TPR1-domain of HOP; HOP 99.4 1.2E-11 4E-16 97.4 16.6 101 147-257 17-117 (118)
173 3gw4_A Uncharacterized protein 99.4 3E-13 1E-17 118.1 7.3 151 147-308 5-174 (203)
174 3gw4_A Uncharacterized protein 99.4 2.8E-13 9.7E-18 118.3 6.7 161 188-376 2-176 (203)
175 1xi4_A Clathrin heavy chain; a 99.4 4.5E-12 1.5E-16 136.2 16.1 224 147-409 1147-1382(1630)
176 3q49_B STIP1 homology and U bo 99.4 6.5E-12 2.2E-16 102.4 13.7 105 147-261 22-131 (137)
177 2kat_A Uncharacterized protein 99.4 1E-11 3.5E-16 98.4 14.0 102 196-298 3-106 (115)
178 2xev_A YBGF; tetratricopeptide 99.4 2.7E-11 9.2E-16 97.6 15.8 108 147-261 15-125 (129)
179 1ihg_A Cyclophilin 40; ppiase 99.4 3E-12 1E-16 123.7 11.5 121 147-267 236-362 (370)
180 2l6j_A TPR repeat-containing p 99.3 1.2E-12 4E-17 102.6 6.5 90 178-267 4-99 (111)
181 3ro3_A PINS homolog, G-protein 99.3 3.4E-11 1.2E-15 100.2 15.8 128 147-279 22-161 (164)
182 2dba_A Smooth muscle cell asso 99.3 9.8E-12 3.4E-16 102.4 11.7 120 206-358 22-144 (148)
183 3ro3_A PINS homolog, G-protein 99.3 6.9E-12 2.4E-16 104.4 10.1 132 175-307 6-155 (164)
184 1na3_A Designed protein CTPR2; 99.3 3E-11 1E-15 90.8 12.7 84 177-260 8-91 (91)
185 2l6j_A TPR repeat-containing p 99.3 1E-11 3.4E-16 97.2 10.2 95 211-306 3-103 (111)
186 2kck_A TPR repeat; tetratricop 99.3 2.1E-12 7.1E-17 100.8 5.7 101 207-308 1-104 (112)
187 1elr_A TPR2A-domain of HOP; HO 99.3 4.4E-11 1.5E-15 95.9 12.5 103 147-260 17-126 (131)
188 1na3_A Designed protein CTPR2; 99.3 3.7E-11 1.3E-15 90.3 11.2 85 210-295 7-91 (91)
189 1b89_A Protein (clathrin heavy 99.3 1.2E-12 4E-17 126.9 2.5 140 136-303 124-265 (449)
190 4b4t_Q 26S proteasome regulato 99.2 8.7E-11 3E-15 115.1 15.6 208 34-307 16-242 (434)
191 3mv2_B Coatomer subunit epsilo 99.2 3E-11 1E-15 112.1 11.2 188 153-382 85-288 (310)
192 4b4t_Q 26S proteasome regulato 99.2 5.2E-11 1.8E-15 116.7 13.3 204 147-376 17-245 (434)
193 2kat_A Uncharacterized protein 99.2 7.8E-11 2.7E-15 93.2 11.3 99 152-260 3-103 (115)
194 3ma5_A Tetratricopeptide repea 99.2 1.3E-10 4.3E-15 89.8 11.2 88 207-295 2-91 (100)
195 2kc7_A BFR218_protein; tetratr 99.2 4.2E-11 1.4E-15 91.9 7.8 90 182-280 4-94 (99)
196 1klx_A Cysteine rich protein B 99.1 9.9E-10 3.4E-14 90.2 14.6 121 147-288 8-136 (138)
197 4e6h_A MRNA 3'-END-processing 99.1 3E-09 1E-13 110.0 18.0 193 148-380 357-574 (679)
198 3ma5_A Tetratricopeptide repea 99.1 7.3E-10 2.5E-14 85.5 9.9 81 178-258 7-89 (100)
199 3mv2_B Coatomer subunit epsilo 99.1 3.9E-09 1.3E-13 97.9 15.7 147 147-305 113-277 (310)
200 3n71_A Histone lysine methyltr 99.0 2E-09 6.8E-14 107.2 14.5 128 146-276 321-464 (490)
201 4e6h_A MRNA 3'-END-processing 99.0 3.1E-09 1.1E-13 109.9 14.0 219 150-411 325-573 (679)
202 3ly7_A Transcriptional activat 99.0 8.9E-10 3E-14 104.0 8.5 68 178-246 277-344 (372)
203 2kc7_A BFR218_protein; tetratr 99.0 4.5E-09 1.5E-13 80.3 10.8 71 215-286 3-74 (99)
204 3n71_A Histone lysine methyltr 99.0 5.3E-09 1.8E-13 104.2 13.4 127 180-307 311-461 (490)
205 1pc2_A Mitochondria fission pr 98.9 1.6E-08 5.6E-13 83.0 13.0 102 193-295 13-119 (152)
206 3ly7_A Transcriptional activat 98.9 1.8E-08 6.2E-13 95.1 14.5 124 147-282 212-345 (372)
207 3bee_A Putative YFRE protein; 98.9 2.6E-08 9E-13 75.5 11.1 72 208-280 2-76 (93)
208 1klx_A Cysteine rich protein B 98.8 2.9E-08 9.9E-13 81.3 9.3 109 191-308 8-124 (138)
209 2v5f_A Prolyl 4-hydroxylase su 98.7 2.6E-07 8.9E-12 71.5 12.8 76 212-288 5-87 (104)
210 1pc2_A Mitochondria fission pr 98.7 1.5E-07 5.2E-12 77.2 11.3 100 146-255 10-114 (152)
211 2uy1_A Cleavage stimulation fa 98.7 8E-06 2.7E-10 81.6 26.2 205 150-410 195-447 (493)
212 2v5f_A Prolyl 4-hydroxylase su 98.7 2.3E-07 7.8E-12 71.9 11.1 77 178-254 5-88 (104)
213 3bee_A Putative YFRE protein; 98.6 1.3E-07 4.6E-12 71.5 9.3 69 178-246 6-77 (93)
214 3qww_A SET and MYND domain-con 98.6 2.7E-07 9.4E-12 90.3 13.1 100 147-248 311-423 (433)
215 3qww_A SET and MYND domain-con 98.6 6.1E-07 2.1E-11 87.8 14.4 96 189-285 309-425 (433)
216 3u64_A Protein TP_0956; tetrat 98.6 8.5E-07 2.9E-11 80.4 14.0 105 175-280 149-273 (301)
217 3qwp_A SET and MYND domain-con 98.5 4.3E-07 1.5E-11 89.0 11.7 108 185-293 294-425 (429)
218 3qwp_A SET and MYND domain-con 98.5 5.1E-07 1.7E-11 88.5 11.2 110 147-258 300-425 (429)
219 1nzn_A CGI-135 protein, fissio 98.4 3.3E-06 1.1E-10 66.7 12.4 102 192-294 15-121 (126)
220 3u64_A Protein TP_0956; tetrat 98.3 1E-05 3.4E-10 73.4 12.9 96 142-245 171-273 (301)
221 1nzn_A CGI-135 protein, fissio 98.0 7.5E-05 2.6E-09 58.9 11.6 98 148-255 15-117 (126)
222 4h7y_A Dual specificity protei 97.9 0.00022 7.4E-09 57.6 12.4 105 178-284 13-131 (161)
223 3ffl_A Anaphase-promoting comp 97.9 0.00033 1.1E-08 57.8 13.3 140 123-291 23-165 (167)
224 2uy1_A Cleavage stimulation fa 97.8 0.00074 2.5E-08 67.3 17.9 168 194-373 195-380 (493)
225 3o48_A Mitochondria fission 1 97.8 0.0004 1.4E-08 54.9 12.3 85 211-296 39-127 (134)
226 1y8m_A FIS1; mitochondria, unk 97.8 0.0012 4.2E-08 52.8 14.7 85 209-294 36-124 (144)
227 3ffl_A Anaphase-promoting comp 97.7 0.00023 7.9E-09 58.7 9.5 118 178-308 20-149 (167)
228 4g26_A Pentatricopeptide repea 97.5 0.0064 2.2E-07 60.5 19.4 151 147-307 39-201 (501)
229 4g26_A Pentatricopeptide repea 97.5 0.013 4.6E-07 58.2 21.3 136 147-293 83-222 (501)
230 4gof_A Small glutamine-rich te 97.3 0.00014 4.7E-09 47.1 3.2 44 13-56 2-48 (52)
231 2lxb_A Small glutamine-rich te 97.2 0.00026 8.9E-09 49.4 3.9 48 9-56 3-53 (74)
232 4asv_A Small glutamine-rich te 97.2 0.00022 7.6E-09 51.6 3.3 63 10-72 16-86 (92)
233 3o48_A Mitochondria fission 1 97.2 0.0039 1.3E-07 49.3 10.7 79 178-256 40-122 (134)
234 1y8m_A FIS1; mitochondria, unk 97.1 0.0053 1.8E-07 49.2 11.0 78 178-255 39-120 (144)
235 4gns_B Protein CSD3, chitin bi 96.9 0.012 4.1E-07 61.0 14.4 61 178-238 337-397 (754)
236 4gns_B Protein CSD3, chitin bi 96.7 0.013 4.6E-07 60.6 13.1 113 149-273 264-397 (754)
237 3kae_A CDC27, possible protein 96.7 0.19 6.4E-06 41.4 17.4 185 179-380 34-241 (242)
238 4h7y_A Dual specificity protei 96.6 0.025 8.5E-07 45.7 10.9 97 148-247 33-129 (161)
239 1zbp_A Hypothetical protein VP 96.2 0.057 2E-06 48.2 12.0 128 221-380 6-133 (273)
240 1ya0_A SMG-7 transcript varian 95.7 0.062 2.1E-06 53.0 11.3 79 214-293 154-232 (497)
241 2ff4_A Probable regulatory pro 95.4 0.28 9.7E-06 46.8 14.5 90 185-275 122-233 (388)
242 1ya0_A SMG-7 transcript varian 95.3 0.11 3.7E-06 51.3 11.2 81 178-258 152-232 (497)
243 1zbp_A Hypothetical protein VP 95.1 0.27 9.4E-06 43.8 12.0 61 187-247 6-66 (273)
244 3mkq_B Coatomer subunit alpha; 94.8 0.71 2.4E-05 38.5 13.0 98 147-273 18-115 (177)
245 2ff4_A Probable regulatory pro 94.2 0.31 1.1E-05 46.5 11.2 94 148-241 129-234 (388)
246 3mkq_A Coatomer beta'-subunit; 93.9 0.26 8.9E-06 51.5 10.9 18 345-363 782-799 (814)
247 4b4t_R RPN7, 26S proteasome re 93.8 0.37 1.3E-05 46.7 10.9 100 178-278 131-239 (429)
248 3txn_A 26S proteasome regulato 93.5 5.2 0.00018 37.9 19.6 122 148-276 73-210 (394)
249 3mkq_A Coatomer beta'-subunit; 93.0 0.67 2.3E-05 48.3 12.1 27 178-204 681-707 (814)
250 4b4t_S RPN3, 26S proteasome re 92.0 0.18 6.1E-06 49.6 5.6 131 146-280 148-303 (523)
251 4b4t_P 26S proteasome regulato 91.8 3.4 0.00012 40.0 14.7 99 177-276 136-247 (445)
252 3spa_A Mtrpol, DNA-directed RN 90.9 4.3 0.00015 43.4 14.9 100 177-277 126-231 (1134)
253 3kae_A CDC27, possible protein 90.1 2.2 7.4E-05 35.2 9.3 71 178-248 62-150 (242)
254 4fhn_B Nucleoporin NUP120; pro 88.2 3.5 0.00012 45.2 12.5 94 178-272 842-963 (1139)
255 4fhn_B Nucleoporin NUP120; pro 87.6 2.1 7E-05 47.0 10.2 116 184-304 818-961 (1139)
256 1qsa_A Protein (soluble lytic 86.8 3.9 0.00013 41.4 11.0 90 184-275 258-347 (618)
257 3mkq_B Coatomer subunit alpha; 86.3 6.9 0.00024 32.4 10.4 98 189-305 16-113 (177)
258 4b4t_P 26S proteasome regulato 86.1 19 0.00064 34.7 15.1 196 147-375 29-246 (445)
259 3txn_A 26S proteasome regulato 85.5 6.3 0.00022 37.4 11.0 111 147-261 112-235 (394)
260 1qsa_A Protein (soluble lytic 84.0 15 0.00051 37.1 13.7 189 181-376 217-410 (618)
261 4b4t_R RPN7, 26S proteasome re 82.8 6.6 0.00022 37.8 10.2 91 146-243 143-239 (429)
262 3spa_A Mtrpol, DNA-directed RN 78.9 20 0.00068 38.4 12.6 90 147-242 140-231 (1134)
263 4gq2_M Nucleoporin NUP120; bet 77.5 18 0.00062 38.7 12.3 95 184-283 816-934 (950)
264 3lvg_A Clathrin heavy chain 1; 77.3 0.0055 1.9E-07 59.3 -13.2 58 178-240 54-111 (624)
265 4b4t_S RPN3, 26S proteasome re 75.9 4.1 0.00014 40.0 6.1 69 175-245 228-303 (523)
266 3esl_A Checkpoint serine/threo 73.0 42 0.0014 28.3 11.9 87 155-243 58-146 (202)
267 1wy6_A Hypothetical protein ST 66.7 38 0.0013 26.9 8.5 124 147-276 20-154 (172)
268 2wvi_A Mitotic checkpoint seri 64.4 48 0.0016 26.9 9.2 84 154-244 43-128 (164)
269 3t5x_A PCI domain-containing p 64.2 18 0.00061 30.7 7.0 38 175-212 11-48 (203)
270 3ax2_A Mitochondrial import re 64.0 19 0.00064 24.9 5.7 35 181-215 20-54 (73)
271 3t5v_B Nuclear mRNA export pro 63.9 1.1E+02 0.0036 29.5 18.8 99 147-245 139-254 (455)
272 2crb_A Nuclear receptor bindin 61.8 17 0.00059 26.3 5.2 31 176-206 13-43 (97)
273 1wy6_A Hypothetical protein ST 60.7 39 0.0013 26.8 7.5 62 181-242 93-155 (172)
274 4gq2_M Nucleoporin NUP120; bet 60.0 25 0.00086 37.6 8.8 70 178-247 840-933 (950)
275 2w2u_A Hypothetical P60 katani 59.3 12 0.00041 26.6 4.2 16 258-274 31-46 (83)
276 3ax2_A Mitochondrial import re 59.1 34 0.0011 23.6 6.3 33 251-284 22-54 (73)
277 2v6y_A AAA family ATPase, P60 58.5 13 0.00043 26.5 4.2 16 258-274 23-38 (83)
278 2crb_A Nuclear receptor bindin 58.2 5.4 0.00018 28.9 2.1 33 341-374 10-42 (97)
279 2ijq_A Hypothetical protein; s 56.8 52 0.0018 26.6 8.1 61 180-240 34-103 (161)
280 3mv2_A Coatomer subunit alpha; 56.8 1.2E+02 0.004 27.7 11.6 38 119-167 110-147 (325)
281 1om2_A Protein (mitochondrial 55.9 56 0.0019 23.8 7.3 33 182-214 24-56 (95)
282 4aez_C MAD3, mitotic spindle c 55.6 48 0.0016 28.4 8.1 33 210-242 148-180 (223)
283 2wpv_A GET4, UPF0363 protein Y 54.3 1.3E+02 0.0043 27.3 14.3 30 344-373 185-214 (312)
284 4a1g_A Mitotic checkpoint seri 51.3 61 0.0021 26.0 7.6 85 154-245 48-134 (152)
285 3t5v_B Nuclear mRNA export pro 50.8 95 0.0033 29.9 10.3 88 192-280 140-254 (455)
286 2ijq_A Hypothetical protein; s 47.4 1E+02 0.0035 24.9 8.4 60 216-276 36-104 (161)
287 3t5x_A PCI domain-containing p 46.5 41 0.0014 28.4 6.3 35 212-246 14-48 (203)
288 2w2u_A Hypothetical P60 katani 46.5 37 0.0013 24.1 5.1 17 190-206 31-47 (83)
289 1ka8_A Putative P4-specific DN 45.1 23 0.00078 26.1 3.8 44 1-45 23-66 (100)
290 3re2_A Predicted protein; meni 44.0 1.2E+02 0.004 28.2 8.9 60 231-291 276-346 (472)
291 2cfu_A SDSA1; SDS-hydrolase, l 43.7 51 0.0018 33.5 7.6 53 211-263 448-500 (658)
292 2wpv_A GET4, UPF0363 protein Y 42.8 1.9E+02 0.0066 26.1 17.4 134 119-271 12-158 (312)
293 2v6y_A AAA family ATPase, P60 42.4 46 0.0016 23.5 5.1 17 190-206 23-39 (83)
294 4a5x_A MITD1, MIT domain-conta 40.9 31 0.0011 24.6 3.9 16 258-274 28-43 (86)
295 2cpt_A SKD1 protein, vacuolar 39.6 32 0.0011 26.2 4.1 16 258-274 30-45 (117)
296 2v6x_A Vacuolar protein sortin 39.5 37 0.0013 24.0 4.2 16 258-274 25-40 (85)
297 1om2_A Protein (mitochondrial 38.6 53 0.0018 24.0 4.8 27 252-279 26-52 (95)
298 4a5x_A MITD1, MIT domain-conta 38.6 59 0.002 23.1 5.2 22 185-206 23-44 (86)
299 3lpz_A GET4 (YOR164C homolog); 38.1 2.4E+02 0.0081 25.8 17.4 26 244-270 134-159 (336)
300 3mkr_B Coatomer subunit alpha; 37.1 2.4E+02 0.0082 25.6 12.9 38 119-167 98-135 (320)
301 3u84_A Menin; MLL, JUND, ledgf 35.4 1.9E+02 0.0064 27.4 9.0 59 231-290 298-367 (550)
302 2v6x_A Vacuolar protein sortin 35.4 67 0.0023 22.6 5.1 17 190-206 25-41 (85)
303 1wfd_A Hypothetical protein 15 34.4 69 0.0024 23.1 5.1 17 148-164 10-26 (93)
304 4gq4_A Menin; tumor suppressor 34.3 2.4E+02 0.0083 26.7 9.6 83 193-291 260-353 (489)
305 2cfu_A SDSA1; SDS-hydrolase, l 32.8 1E+02 0.0036 31.2 7.9 53 246-299 449-501 (658)
306 2cwy_A Hypothetical protein TT 32.7 1.1E+02 0.0038 22.1 5.9 27 184-210 7-33 (94)
307 3lpz_A GET4 (YOR164C homolog); 32.5 2.9E+02 0.01 25.2 15.5 190 148-372 10-212 (336)
308 2cpt_A SKD1 protein, vacuolar 30.9 75 0.0026 24.1 4.9 15 149-163 14-28 (117)
309 2dl1_A Spartin; SPG20, MIT, st 30.3 58 0.002 24.7 4.0 18 226-243 17-34 (116)
310 2rpa_A Katanin P60 ATPase-cont 28.4 54 0.0019 22.9 3.4 28 180-207 14-41 (78)
311 3myv_A SUSD superfamily protei 27.2 1.4E+02 0.0048 28.5 7.4 30 344-374 333-364 (454)
312 3snx_A SUSD homolog, putative 26.8 1.1E+02 0.0039 29.3 6.7 30 344-374 319-349 (460)
313 2rpa_A Katanin P60 ATPase-cont 26.1 61 0.0021 22.6 3.3 26 249-275 15-40 (78)
314 3kez_A Putative sugar binding 26.1 1.5E+02 0.0052 28.3 7.4 30 344-374 336-365 (461)
315 3lew_A SUSD-like carbohydrate 25.5 1.4E+02 0.0047 29.0 7.0 29 344-374 345-373 (495)
316 3myv_A SUSD superfamily protei 24.2 1.4E+02 0.0048 28.5 6.8 56 150-207 164-219 (454)
317 1wfd_A Hypothetical protein 15 24.1 2E+02 0.0069 20.6 7.2 26 181-206 18-43 (93)
318 4b4t_O 26S proteasome regulato 23.3 4.5E+02 0.015 24.4 12.4 90 185-275 83-197 (393)
319 3uzd_A 14-3-3 protein gamma; s 22.9 3.7E+02 0.013 23.3 11.0 21 35-55 17-37 (248)
320 3lvg_A Clathrin heavy chain 1; 22.7 0.51 1.8E-05 45.9 -10.5 122 217-358 149-274 (624)
321 3lew_A SUSD-like carbohydrate 22.7 1.9E+02 0.0065 27.9 7.4 31 245-276 202-232 (495)
322 2ymb_A MITD1, MIT domain-conta 22.6 18 0.00062 31.8 0.0 21 31-51 32-52 (257)
323 3mcx_A SUSD superfamily protei 22.0 1.7E+02 0.0057 28.1 6.9 31 344-375 355-386 (477)
324 3kez_A Putative sugar binding 21.9 1.6E+02 0.0054 28.2 6.6 56 150-207 170-225 (461)
325 3hdx_A SUSD homolog, SUSD supe 21.9 1.7E+02 0.0058 28.1 6.9 58 150-207 156-226 (478)
326 4ady_A RPN2, 26S proteasome re 21.0 2.3E+02 0.0079 30.0 7.9 215 151-411 471-699 (963)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.9e-30 Score=248.18 Aligned_cols=224 Identities=17% Similarity=0.161 Sum_probs=205.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++.++|++..+++.+|.++...|
T Consensus 148 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQPNF----------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 689999999999999998887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|++++.++|+++.++..+|.++...|++++|+. .|+++++++|+++.++..++.++...|++++|...+..
T Consensus 218 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID-TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999998877
Q ss_pred cCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 307 TSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 307 ~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
+.. .|.... +..+...|++++|+..| ++..+| +++.++..+| .++...|++++|+..|+++++++|
T Consensus 297 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-----EFAAAHSNLA-SVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-----TCHHHHHHHH-HHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 652 232222 56788889999999999 999999 9999999999 999999999999999999999999
Q ss_pred Cc-ccccccc
Q 013948 379 GI-RIGGNIN 387 (433)
Q Consensus 379 ~~-~~~~~~~ 387 (433)
++ ....+++
T Consensus 371 ~~~~a~~~lg 380 (388)
T 1w3b_A 371 TFADAYSNMG 380 (388)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHhHH
Confidence 98 4444443
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=6.9e-29 Score=241.85 Aligned_cols=244 Identities=16% Similarity=0.135 Sum_probs=216.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.. ..++..+|.++...|++++|+..|.+++..+|+++.+|.++|.++...|
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDL----------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTC----------THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 689999999999999998887 7889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|+++.++..+|.++...|++++|+. .|++++.++|+++.++..++.++...|++++|...+..
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA-AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999998887
Q ss_pred cC-CCccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 307 TS-SSHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 307 ~~-~~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
+. ..|.... +..+...|++++|+..| ++..+| +++.++..+| .++...|++++|+..|+++++++|
T Consensus 263 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-----THADSLNNLA-NIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----ccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 65 3333222 56677889999999999 999999 9999999999 999999999999999999999999
Q ss_pred Cc-ccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 379 GI-RIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 379 ~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
++ ....++...+. ..+.++....++...+
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98 55555544442 3455555555555443
No 3
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=5.5e-27 Score=224.18 Aligned_cols=286 Identities=12% Similarity=0.061 Sum_probs=234.2
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|+.+|+++++.+|+++.++...+.++.....+..+....... +.+.+
T Consensus 15 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~--------------------~~~~~------ 68 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV--------------------IALKM------ 68 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------HHHCT------
T ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH--------------------HHhCC------
Confidence 3567999999999999999999866666665555555555554421000 00100
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHh---hccccccchhhHHHHHHHH------
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEME---KSGAHAYNQKNLAEIFKCQ------ 184 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~l------ 184 (433)
.....+..+...... .|++++|+..|++++...| .+ ..++..+
T Consensus 69 -----~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~ 120 (359)
T 3ieg_A 69 -----DFTAARLQRGHLLLK-------------QGKLDEAEDDFKKVLKSNPSEQEE----------KEAESQLVKADEM 120 (359)
T ss_dssp -----TCHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHTSCCCHHHH----------HHHHHHHHHHHHH
T ss_pred -----CcchHHHHHHHHHHH-------------cCChHHHHHHHHHHHhcCCcccCh----------HHHHHHHHHHHHH
Confidence 011222223333332 6899999999999999988 65 4455444
Q ss_pred ------HHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 185 ------GNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 185 ------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|.++.+++.+|.++..
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHHHHHHHhcccccccCC-Cccch---------hh
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNEAVKENI------------RMAEQKLREERQRTGWDQTTSS-SHYSQ---------ES 316 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~-~~~~~---------~~ 316 (433)
.|++++|+. .++++++.+|++..++..+ +.++...|++++|...+..+.. .+... .+
T Consensus 201 ~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 201 LGDHELSLS-EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERIC 279 (359)
T ss_dssp HTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHH-HHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 999999999 9999999999998876543 7778899999999998777652 22222 14
Q ss_pred hhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 317 NQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 317 ~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..+...|++++|+..| ++..+| +++.++..+| .++...|++++|+..|+++++++|++
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQMEP-----DNVNALKDRA-EAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-----ccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 5678889999999999 999999 9999999999 99999999999999999999999997
No 4
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.4e-26 Score=216.49 Aligned_cols=217 Identities=10% Similarity=0.018 Sum_probs=195.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ-QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|++++|+..+++++..+|.+ ..+++.+|.++...| ++++|+..|++++..+|+++.+|+.+|.++...
T Consensus 69 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 69 LNKANELFYLSHKLVDLYPSN----------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE 138 (330)
T ss_dssp HTCHHHHHHHHHHHHHHCTTS----------THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCC----------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence 478999999999999998887 788999999999999 999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
|++++|+..++++++..|++..++..+|.++...|++++|+. +++++++.+|.++.++..+|.++...|++++|...+.
T Consensus 139 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER-FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999988876
Q ss_pred ccCCC----------ccc-----hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHH
Q 013948 306 TTSSS----------HYS-----QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGE 368 (433)
Q Consensus 306 ~~~~~----------~~~-----~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~ 368 (433)
.+... +.. ..+..|...|++++|+..| ++..+| +++.++..+| .++..+|++++|+.
T Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~la-~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-----QNASTYSAIG-YIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCSHHHHHHH-HHHHHHTCHHHHHH
T ss_pred HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-----cchHHHHHHH-HHHHHhccHHHHHH
Confidence 65421 111 1256778889999999999 899999 8999999999 99999999999999
Q ss_pred HHhhhcCCCCCc
Q 013948 369 DSNVSGSDEPGI 380 (433)
Q Consensus 369 ~~~~al~l~P~~ 380 (433)
.|+++++++|++
T Consensus 292 ~~~~al~~~p~~ 303 (330)
T 3hym_B 292 YFHTALGLRRDD 303 (330)
T ss_dssp HHHTTTTTCSCC
T ss_pred HHHHHHccCCCc
Confidence 999999999998
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.3e-26 Score=225.92 Aligned_cols=295 Identities=12% Similarity=0.064 Sum_probs=233.9
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCCC
Q 013948 35 LEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEPD 114 (433)
Q Consensus 35 ~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 114 (433)
.+++++|+.+|+++++++|+++.++...+.++.....++.+...... .+.+.+
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------------------al~~~p------- 91 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK--------------------VIQLKM------- 91 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------HHHHCT-------
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHH--------------------HHhcCC-------
Confidence 46799999999999999999985555555555444444444431100 000100
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhcc---cccc--chhhHHHHHHHHHHHHH
Q 013948 115 STGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSG---AHAY--NQKNLAEIFKCQGNRVM 189 (433)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~--~~~~~~~~~~~lg~~~~ 189 (433)
.....+..+...+.. .|++++|+..|++++...|.+. .... ........++.+|.++.
T Consensus 92 ----~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 92 ----DFTAARLQRGHLLLK-------------QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp ----TCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011222223333333 6899999999999999887651 0000 00001112445588899
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG 269 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 269 (433)
..|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+. .
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~ 233 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS-E 233 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH-H
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhCCCCHHHHHHH------------HHHHHHHHHHHHhcccccccCC-Cccch---------hhhhhhcCCCCCC
Q 013948 270 FKKALQLDPNNEAVKENI------------RMAEQKLREERQRTGWDQTTSS-SHYSQ---------ESNQSTGGFRSHG 327 (433)
Q Consensus 270 ~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~ 327 (433)
|++++.++|++...+..+ +.++...|++++|...+..+.. .|... .+..+...|++++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 999999999999988776 8999999999999998877652 22221 1567888899999
Q ss_pred CCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 328 TPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 328 A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
|+..+ ++..+| +++.++..+| .++...|++++|+..|+++++++|++
T Consensus 314 A~~~~~~a~~~~p-----~~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 314 AIRVCSEVLQMEP-----DNVNALKDRA-EAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHhCc-----ccHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 99999 899999 9999999999 99999999999999999999999998
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=5.9e-26 Score=220.68 Aligned_cols=195 Identities=9% Similarity=0.040 Sum_probs=165.8
Q ss_pred cch-HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQ-VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|+ +++|+..|++++.++|++ ..+|+.+|.++...|++++|+.+|++++.++|++..+|+++|.++..+
T Consensus 144 ~g~d~~eAl~~~~~al~l~P~~----------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~ 213 (382)
T 2h6f_A 144 LQKDLHEEMNYITAIIEEQPKN----------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF 213 (382)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence 465 899999999999998888 889999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhhCCCCHHHHHHHHHHHHHHH--HH
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA-QGNYNDA-----IEKGFKKALQLDPNNEAVKENIRMAEQKLR--EE 297 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~ 297 (433)
|++++|+.+|+++++++|++..+|+.+|.++.. .|.+++| +. +|++++.++|++..+|.+++.++...| ++
T Consensus 214 g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~-~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 214 KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ-YTLEMIKLVPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHccCccch
Confidence 999999999999999999999999999999998 5554777 47 899999999999999999998888766 35
Q ss_pred HHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC--------C-hhhHHH
Q 013948 298 RQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP--------S-QSRQGE 368 (433)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g--------~-~~~A~~ 368 (433)
+++..... .+..+| +.+.++..+| .++..+| + +++|+.
T Consensus 293 ~~a~~~~~---------------------------~~~~~p-----~~~~al~~La-~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 293 PNLLNQLL---------------------------DLQPSH-----SSPYLIAFLV-DIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHH---------------------------HHTTTC-----CCHHHHHHHH-HHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHH---------------------------HhccCC-----CCHHHHHHHH-HHHHHHhcccccchHHHHHHHHH
Confidence 55544433 236788 9999999999 9998874 2 589999
Q ss_pred HHhhh-cCCCCCc-ccccc
Q 013948 369 DSNVS-GSDEPGI-RIGGN 385 (433)
Q Consensus 369 ~~~~a-l~l~P~~-~~~~~ 385 (433)
.|+++ +++||.. ..+..
T Consensus 340 ~~~~l~~~~DP~r~~~w~~ 358 (382)
T 2h6f_A 340 LCEILAKEKDTIRKEYWRY 358 (382)
T ss_dssp HHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHH
Confidence 99999 9999987 44433
No 7
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=2e-24 Score=193.62 Aligned_cols=184 Identities=14% Similarity=0.133 Sum_probs=162.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI- 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 225 (433)
.|++++|+..|+++++.+|.+ +.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++...
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 18 LGRYDAALTLFERALKENPQD----------PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp TTCHHHHHHHHHHHHTTSSSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence 589999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred ----------hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 226 ----------HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 226 ----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
|++++|+..|+++++++|+++.+++.+|.++..+|++++|+. +|+++++++ +++.++..+|.++..+|
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~-~~~~~~~~la~~~~~~g 165 (217)
T 2pl2_A 88 RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEA-SLKQALALE-DTPEIRSALAELYLSMG 165 (217)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC-CCHHHHHHHHHHHHHHT
T ss_pred hhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcc-cchHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999 999999999 99999999999999999
Q ss_pred HHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 296 EERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 296 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
++++|...++. ++..+| +++.++..+| .++..+|++++|+..|+++.
T Consensus 166 ~~~~A~~~~~~--------------------------al~~~P-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 166 RLDEALAQYAK--------------------------ALEQAP-----KDLDLRVRYA-SALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHH--------------------------HHHHST-----TCHHHHHHHH-HHHTC---------------
T ss_pred CHHHHHHHHHH--------------------------HHHhCC-----CChHHHHHHH-HHHHHccCHHHHHHHHHHHh
Confidence 99999887663 577899 9999999999 99999999999999998763
No 8
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=1.8e-23 Score=187.37 Aligned_cols=149 Identities=12% Similarity=0.098 Sum_probs=132.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-----------QQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
.|++++|+..|++++.++|.+ ..+++.+|.++... |++++|+..|+++++++|+++.++
T Consensus 52 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 121 (217)
T 2pl2_A 52 LGLVNPALENGKTLVARTPRY----------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121 (217)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHH
Confidence 589999999999999999988 89999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
+++|.++..+|++++|+..|+++++++ +++.+++.+|.++...|++++|+. .|+++++++|+++.++..++.++..+|
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA-QYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 999999999999999999999999999 999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhccccccc
Q 013948 296 EERQRTGWDQTT 307 (433)
Q Consensus 296 ~~~~a~~~~~~~ 307 (433)
++++|...+...
T Consensus 200 ~~~~A~~~~~~~ 211 (217)
T 2pl2_A 200 KAEEAARAAALE 211 (217)
T ss_dssp ------------
T ss_pred CHHHHHHHHHHH
Confidence 999998887754
No 9
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=9.9e-25 Score=210.45 Aligned_cols=216 Identities=12% Similarity=0.037 Sum_probs=121.1
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
|++++|+.+|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|++..+++.+|.++...|+
T Consensus 79 g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 79 GDLPVTILFMEAAILQDPGD----------AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCcCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 45555555555555554444 44555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHH
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRL----------GLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLR 295 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~l----------g~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~ 295 (433)
+++|+..|+++++++|++..++..+ |.++...|++++|+. +|+++++++|. ++.++..+|.++...|
T Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE-LYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHH-HHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHH-HHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 5555555555555555443333332 455555555555555 55555555555 4555555555555555
Q ss_pred HHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHH
Q 013948 296 EERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 296 ~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
++++|...+..+.. .|.... +..|...|++++|+..| ++..+| +++.++..+| .++..+|++++|+
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~-~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-----GFIRSRYNLG-ISCINLGAYREAV 301 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CchHHHHHHH-HHHHHCCCHHHHH
Confidence 55555554444331 111111 33344445555555555 788899 9999999999 9999999999999
Q ss_pred HHHhhhcCCCCCc
Q 013948 368 EDSNVSGSDEPGI 380 (433)
Q Consensus 368 ~~~~~al~l~P~~ 380 (433)
..|+++++++|+.
T Consensus 302 ~~~~~al~~~~~~ 314 (365)
T 4eqf_A 302 SNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHhCccc
Confidence 9999999999885
No 10
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=3.9e-25 Score=212.99 Aligned_cols=216 Identities=14% Similarity=0.101 Sum_probs=155.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++.+|.+ ..++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...|
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKH----------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 467777777777777766665 6667777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYS----------------RLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIR 288 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~----------------~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~ 288 (433)
++++|+..+++++.++|.+...+. .+|.++ ..|++++|+. .|+++++++|. ++.++..+|
T Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKE-LFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHH-HHHHHHHHSTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHH-HHHHHHHhCcCcccHHHHHHHH
Confidence 777777777777777776655544 345554 6677777777 77777777776 667777777
Q ss_pred HHHHHHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccC
Q 013948 289 MAEQKLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQ 360 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~ 360 (433)
.++...|++++|...+..+.. .|.... +..+...|++++|+..| ++..+| +.+.++..+| .++..+
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l~-~~~~~~ 298 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-----GYIRSRYNLG-ISCINL 298 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHH-HHHHHC
Confidence 777777777777666555442 222111 44556667777777777 788899 9999999999 999999
Q ss_pred CChhhHHHHHhhhcCCCCCc
Q 013948 361 PSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 361 g~~~~A~~~~~~al~l~P~~ 380 (433)
|++++|+..|+++++++|++
T Consensus 299 g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998876
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=8e-24 Score=217.36 Aligned_cols=217 Identities=11% Similarity=0.014 Sum_probs=201.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|+++++++|.+..+|+.+|.++...|
T Consensus 352 ~g~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRHPEK----------AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HTCHHHHHHHHHHHHHHCTTS----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhhCccc----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 689999999999999988877 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++..|++..++..+|.++...|++++|+. .|+++++..|.++.++..++.++...|++++|...+..
T Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE-YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999998877
Q ss_pred cCC-------Cccc-h-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHh
Q 013948 307 TSS-------SHYS-Q-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 307 ~~~-------~~~~-~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
+.. .+.. . .+..|...|++++|+..| ++..+| +++.+|..+| .++...|++++|+..|+
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-----NDANVHTAIA-LVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----CCHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CChHHHHHHH-HHHHHhCCHHHHHHHHH
Confidence 642 2221 1 156678889999999999 888999 9999999999 99999999999999999
Q ss_pred hhcCCCCCc
Q 013948 372 VSGSDEPGI 380 (433)
Q Consensus 372 ~al~l~P~~ 380 (433)
++++++|++
T Consensus 575 ~~l~~~p~~ 583 (597)
T 2xpi_A 575 ESLAISPNE 583 (597)
T ss_dssp HHHHHCTTC
T ss_pred HHHhcCCCC
Confidence 999999998
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=1.5e-23 Score=182.13 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..+.+++...|+++.++..+|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFN 337 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~ 337 (433)
..++++.|.. .+.++++++|.+..++..+|.++..+|++++|+..+++ ++..+
T Consensus 85 ~~~~~~~a~~-~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------------------~l~~~ 137 (184)
T 3vtx_A 85 MIDEKQAAID-ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEK--------------------------TISIK 137 (184)
T ss_dssp HTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHHC
T ss_pred HcCCHHHHHH-HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHH--------------------------HHHhc
Confidence 9999999999 99999999999999999999999999999999887663 57789
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
| +++.+++++| .++..+|++++|+.+|+++++++|++
T Consensus 138 p-----~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 138 P-----GFIRAYQSIG-LAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp T-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred c-----hhhhHHHHHH-HHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 9 9999999999 99999999999999999999999987
No 13
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=9.1e-24 Score=194.72 Aligned_cols=202 Identities=16% Similarity=0.109 Sum_probs=171.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++. .|.+ ......++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 50 ~~~~~~A~~~~~~a~~-~~~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 122 (272)
T 3u4t_A 50 LAKYDLAQKDIETYFS-KVNA------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122 (272)
T ss_dssp TTCHHHHHHHHHHHHT-TSCT------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHh-ccCc------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcc
Confidence 5899999999999999 4433 12236779999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH---HHHhccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE---ERQRTGW 303 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~a~~~ 303 (433)
++++|+.+|+++++++|.++.+++.+|...+..+++++|+. .|+++++++|++..++..++.++..+++ +++|...
T Consensus 123 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 201 (272)
T 3u4t_A 123 NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS-SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPY 201 (272)
T ss_dssp CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHH
T ss_pred CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHH
Confidence 99999999999999999999999999955666679999999 9999999999999999999999998877 5555555
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+..+... ....|.........++..+| .++...|++++|+.+|+++++++|++
T Consensus 202 ~~~a~~~-----------------------~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 202 YEKLIEV-----------------------CAPGGAKYKDELIEANEYIA-YYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHH-----------------------HGGGGGGGHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHH-----------------------HhcccccchHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 4432211 11123000013568999999 99999999999999999999999998
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.1e-24 Score=220.50 Aligned_cols=216 Identities=11% Similarity=0.103 Sum_probs=180.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|. ..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPT-----------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhcCCC-----------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Confidence 47888888888888887654 5678888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|+++.++..+|.++...|++++|+. .++++++.+|+++.++..+|.++...|++++|...+..
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA-FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888 88888888888888888888888888888888887766
Q ss_pred cCCC-ccchh-----------hhhhhcC----------CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCC
Q 013948 307 TSSS-HYSQE-----------SNQSTGG----------FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPS 362 (433)
Q Consensus 307 ~~~~-~~~~~-----------~~~~~~~----------~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~ 362 (433)
+... +.... +..+... |++++|+..| ++..+| +++.++..+| .++..+|+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~l~-~~~~~~g~ 477 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-----RSEQAKIGLA-QLKLQMEK 477 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHTTC
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-----CCHHHHHHHH-HHHHHhcc
Confidence 5421 11100 2344444 8888888888 899999 9999999999 99999999
Q ss_pred hhhHHHHHhhhcCCCCCc
Q 013948 363 QSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 363 ~~~A~~~~~~al~l~P~~ 380 (433)
+++|+..|+++++++|++
T Consensus 478 ~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 478 IDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 999999999999999998
No 15
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.90 E-value=9.1e-24 Score=216.95 Aligned_cols=246 Identities=13% Similarity=0.095 Sum_probs=216.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+.+|++++...|.+ ..++..++.++...|++++|+..|.+++..+|++..+++.+|.+|.+.|
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYN----------LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHcCccc----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 699999999999999998876 6789999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|.+..+|..+|.++...|++++|+. .|+++++..|++..++..++.++...|++++|...+..
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS-AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999877
Q ss_pred cCC-Cccch-----hhhhhhcCCCCCCCCCcc--cccC------CCCCCCccH-HHHHHHHhhcccccCCChhhHHHHHh
Q 013948 307 TSS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPF------NTNALPTDI-ASMLMNMASNMPQAQPSQSRQGEDSN 371 (433)
Q Consensus 307 ~~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~------~p~~~~~~~-~~a~~~la~~~~~~~g~~~~A~~~~~ 371 (433)
+.. .+.+. .+..|...|++++|+..| ++.. +| +. ..+|..+| .++...|++++|+..|+
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p-----~~~~~~~~~l~-~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE-----KPWAATWANLG-HAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS-----GGGHHHHHHHH-HHHHHTTCHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch-----hhHHHHHHHHH-HHHHHhcCHHHHHHHHH
Confidence 652 22222 256788889999999999 6665 56 54 89999999 99999999999999999
Q ss_pred hhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHhhc
Q 013948 372 VSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMMEMF 409 (433)
Q Consensus 372 ~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~~~ 409 (433)
++++++|++ ..+..++..+. ..+.++....++.+.+..
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999998 44444443332 466666666666666543
No 16
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=1.6e-23 Score=203.48 Aligned_cols=193 Identities=8% Similarity=0.012 Sum_probs=175.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ-YSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|++++|+..|+++|.++|.+ ..+|+.+|.++...|+ +++|+..|++++.++|++..+|+++|.++..+
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~----------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAAN----------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCccC----------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 689999999999999999998 9999999999999997 99999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHhcccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL-REERQRTGWD 304 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~ 304 (433)
|++++|+.+|+++++++|++..+|+++|.++..+|++++|+. +|+++++++|++..+|.++|.++..+ |..++|...
T Consensus 180 g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~-~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~- 257 (382)
T 2h6f_A 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ-YVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE- 257 (382)
T ss_dssp TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH-
T ss_pred cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH-
Confidence 999999999999999999999999999999999999999999 99999999999999999999999884 332444200
Q ss_pred cccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCC--ChhhHHHHHhhhcCCCCCc
Q 013948 305 QTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQP--SQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g--~~~~A~~~~~~al~l~P~~ 380 (433)
.++..| ++.++| ++..+|++++ .++..+| ++++|++.++++ +.+|++
T Consensus 258 ----------------------~el~~~~~Al~l~P-----~~~~a~~~l~-~ll~~~g~~~~~~a~~~~~~~-~~~p~~ 308 (382)
T 2h6f_A 258 ----------------------REVQYTLEMIKLVP-----HNESAWNYLK-GILQDRGLSKYPNLLNQLLDL-QPSHSS 308 (382)
T ss_dssp ----------------------HHHHHHHHHHHHST-----TCHHHHHHHH-HHHTTTCGGGCHHHHHHHHHH-TTTCCC
T ss_pred ----------------------HHHHHHHHHHHHCC-----CCHHHHHHHH-HHHHccCccchHHHHHHHHHh-ccCCCC
Confidence 001223 788999 9999999999 8999888 699999999998 999998
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=4.3e-24 Score=205.61 Aligned_cols=217 Identities=10% Similarity=0.054 Sum_probs=178.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH----------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS---------- 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---------- 216 (433)
.|++++|+..|++++..+|.+ ..++..+|.++...|++++|+..|++++..+|++...+.
T Consensus 111 ~g~~~~A~~~~~~al~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 1fch_A 111 NEQELLAISALRRCLELKPDN----------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG 180 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred CcCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhc
Confidence 689999999999999998877 788999999999999999999999999999888776654
Q ss_pred ------HHHHHHHHhhcHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 217 ------NRAAAYTQIHQYAEAVRDCLKSIDIDPN--YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 217 ------~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
.++.++ ..|++++|+..|+++++++|. ++.++..+|.++...|++++|+. +|+++++++|+++.++..+|
T Consensus 181 ~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~l~ 258 (368)
T 1fch_A 181 LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD-CFTAALSVRPNDYLLWNKLG 258 (368)
T ss_dssp -----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcCCHHHHHHHH
Confidence 466666 888888888888888888888 78888888888888888888888 88888888888888888888
Q ss_pred HHHHHHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCC------CccHHHHHHHHhh
Q 013948 289 MAEQKLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNAL------PTDIASMLMNMAS 354 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~------~~~~~~a~~~la~ 354 (433)
.++...|++++|...+..+.. .|.... +..|...|++++|+..| ++..+|... +.....+|..+|
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~- 337 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR- 337 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH-
Confidence 888888888888888776652 222221 55677778888888888 888887210 012289999999
Q ss_pred cccccCCChhhHHHHHhhhcCC
Q 013948 355 NMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~l 376 (433)
.++..+|++++|...++++++.
T Consensus 338 ~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 338 LALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHhCChHhHHHhHHHHHHH
Confidence 9999999999999999988654
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=3.6e-24 Score=202.22 Aligned_cols=216 Identities=9% Similarity=0.026 Sum_probs=125.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH---------
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR--------- 218 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------- 218 (433)
|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|++++..+|.+...+..+
T Consensus 69 ~~~~~A~~~~~~a~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (327)
T 3cv0_A 69 EKDGLAIIALNHARMLDPKD----------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD 138 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------
T ss_pred CCHHHHHHHHHHHHhcCcCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHH
Confidence 55666666666666665554 55566666666666666666666666666666555555444
Q ss_pred -----HH-HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 219 -----AA-AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 219 -----a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
+. ++...|++++|+..++++++.+|.++.++..+|.++...|++++|+. +++++++.+|+++.++..++.++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 139 LNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA-NLRRAVELRPDDAQLWNKLGATLA 217 (327)
T ss_dssp -------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44 45555666666666666666666666666666666666666666666 666666666666666666666666
Q ss_pred HHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCcc------------HHHHHHHH
Q 013948 293 KLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTD------------IASMLMNM 352 (433)
Q Consensus 293 ~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~------------~~~a~~~l 352 (433)
..|++++|...+..+.. .+.... +..|...|++++|+..| ++..+| + .+.++..+
T Consensus 218 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~l 292 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV-----GGTTPTGEASREATRSMWDFF 292 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-----TSCC-----CCTHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----ccccccccchhhcCHHHHHHH
Confidence 66666655555443321 111111 23333444444444444 555566 4 67788888
Q ss_pred hhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 353 ASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 353 a~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
| .++..+|++++|...++++++..|+.
T Consensus 293 ~-~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 293 R-MLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp H-HHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred H-HHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 8 78888888888888888777665554
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=7.2e-25 Score=218.78 Aligned_cols=211 Identities=15% Similarity=0.109 Sum_probs=155.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI- 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 225 (433)
.+++++|+.++++++..+|.. ..++..+|.++...|++++|+..|.++++.+|+++.+++++|.+|...
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGV----------TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKV 295 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCccH----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 588999999999999998887 889999999999999999999999999999999999999999998654
Q ss_pred ------------------hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH---HH
Q 013948 226 ------------------HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA---VK 284 (433)
Q Consensus 226 ------------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~---~~ 284 (433)
+.+++|+..++++++++|.+..++..+|.++...|++++|+. +|+++++++|++.. ++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~-~~~kaL~~~~~~~~~~~~~ 374 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY-YFQKEFSKELTPVAKQLLH 374 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH-HHHHHHHSCCCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH-HHHHHHhcCCCChHHHHHH
Confidence 347889999999999999999999999999999999999999 99999999987654 34
Q ss_pred HHHHHHH-HHHHHHHHhcccccccC-CCccchhh-hhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc
Q 013948 285 ENIRMAE-QKLREERQRTGWDQTTS-SSHYSQES-NQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA 359 (433)
Q Consensus 285 ~~l~~~~-~~~~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~ 359 (433)
..++.+. ...|++++|+.++.++. ..+..... ..+ ..+...+ ++..+| +++.++.++| .++..
T Consensus 375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~------~~l~~~~~~~l~~~p-----~~~~~~~~LG-~~~~~ 442 (472)
T 4g1t_A 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK------DKLQKIAKMRLSKNG-----ADSEALHVLA-FLQEL 442 (472)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH------HHHHHHHHHHHHHCC------CTTHHHHHH-HHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH------HHHHHHHHHHHHhCC-----CCHHHHHHHH-HHHHH
Confidence 5555543 35577888888877655 22222110 000 0011112 677899 9999999999 99999
Q ss_pred CCChhhHHHHHhhhcCCCCCc
Q 013948 360 QPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 360 ~g~~~~A~~~~~~al~l~P~~ 380 (433)
+|++++|+++|++|++++|.+
T Consensus 443 ~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHCC----------------
T ss_pred cCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999987
No 20
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.3e-24 Score=212.33 Aligned_cols=244 Identities=11% Similarity=0.013 Sum_probs=210.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHH-----
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA---VYYSNR----- 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l----- 218 (433)
.|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..|++++..+|++. .++..+
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDF----------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 689999999999999998887 88999999999999999999999999999999988 776655
Q ss_pred -------HHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 219 -------AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 219 -------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+. .|+++++.+|.++.++..++.++
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS-DLKAASKLKNDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHH-HHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 6779999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhcccccccCC-Cccchh-----------------hhhhhcCCCCCCCCCcc--cccCCCCCCCccH----HH
Q 013948 292 QKLREERQRTGWDQTTSS-SHYSQE-----------------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDI----AS 347 (433)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~----~~ 347 (433)
...|++++|...+..+.. .|.... +..+...|++++|+..| ++..+| ++ ..
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~ 296 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SIAEYTVR 296 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-----SSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----cchHHHHH
Confidence 999999999998877652 222222 45667779999999999 888999 55 45
Q ss_pred HHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 348 MLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 348 a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
++..+| .++...|++++|+..++++++++|++ ..+.+++..+. ..+.++....++...+
T Consensus 297 ~~~~l~-~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 297 SKERIC-HCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHH-HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 889999 99999999999999999999999998 55444443332 4555555555555544
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.4e-23 Score=198.47 Aligned_cols=229 Identities=10% Similarity=0.025 Sum_probs=204.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..++..++.++...|++++|+..+.+++..+|+++.+|+.+|.++...|
T Consensus 35 ~g~~~~A~~~~~~~l~~~p~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDPFH----------ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHcCCCC----------hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhh
Confidence 489999999999999999887 6788889999999999999999999999999999999999999999999
Q ss_pred -cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 227 -QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 227 -~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
++++|+.+|++++.++|+++.+|..+|.++...|++++|+. .|++++++.|++..++..++.++...|++++|...+.
T Consensus 105 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA-AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999988
Q ss_pred ccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCC----CccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 306 TTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNAL----PTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 306 ~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~----~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.+.. .+.... +..+...|++++|+..+ ++...|... +...+.++..+| .++..+|++++|+..|+++
T Consensus 184 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG-HVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH-HHHHHhcCHHHHHHHHHHH
Confidence 7763 333222 56788889999999999 666652100 016678999999 9999999999999999999
Q ss_pred cCCCCCc-ccccccc
Q 013948 374 GSDEPGI-RIGGNIN 387 (433)
Q Consensus 374 l~l~P~~-~~~~~~~ 387 (433)
++++|++ ....++.
T Consensus 263 ~~~~~~~~~~~~~la 277 (330)
T 3hym_B 263 LVLIPQNASTYSAIG 277 (330)
T ss_dssp HHHSTTCSHHHHHHH
T ss_pred HhhCccchHHHHHHH
Confidence 9999998 4444444
No 22
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.8e-24 Score=217.41 Aligned_cols=250 Identities=15% Similarity=0.073 Sum_probs=184.6
Q ss_pred cchHHHHHHHHHHHHHH-------HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINE-------MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 219 (433)
.|++++|+..|++++.. .|.+. ...+....+++.+|.++...|++++|+..|++++..+|+ ..+++.+|
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~ 277 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDE---KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMA 277 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCH---HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCcccc---ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHH
Confidence 68999999999999993 22220 012445888999999999999999999999999999988 88888888
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+. +|+++++++|.+..++..++.++...|++++
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK-DFDKAKELDPENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH-HHHHHHHTCSSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhChhhHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888888888888888888888888888888888888 8888888888888888888888888888888
Q ss_pred hcccccccCC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHH------HHHHHHhhccccc---CCC
Q 013948 300 RTGWDQTTSS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIA------SMLMNMASNMPQA---QPS 362 (433)
Q Consensus 300 a~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~------~a~~~la~~~~~~---~g~ 362 (433)
|...+..+.. .+... .+..|...|++++|+..| ++..+| +.+ .++..+| .++.. .|+
T Consensus 357 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 430 (514)
T 2gw1_A 357 CETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN-----KLDGIYVGIAPLVGKA-TLLTRNPTVEN 430 (514)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----TSSSCSSCSHHHHHHH-HHHHTSCCTTH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh-----ccchHHHHHHHHHHHH-HHHhhhhhcCC
Confidence 8777665542 12111 145667778888888777 666666 443 3777777 77777 788
Q ss_pred hhhHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 363 QSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 363 ~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
+++|+..|+++++++|++ .....+...+. ..+.++....++...+
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 888888888888888777 33333222221 3444444444444444
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=5.2e-23 Score=198.40 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHHHHHHHHhcccccccCC-Ccc--ch-----hhhhh
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENI----------RMAEQKLREERQRTGWDQTTSS-SHY--SQ-----ESNQS 319 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~~a~~~~~~~~~-~~~--~~-----~~~~~ 319 (433)
..|++++|+. +|+++++++|++..++..+ +.++...|++++|...+..+.. .|. .. .+..|
T Consensus 145 ~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACE-ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHH-HHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHH-HHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 9999999999 9999999999877766655 9999999999999999887763 222 12 15677
Q ss_pred hcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCc
Q 013948 320 TGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMP 395 (433)
Q Consensus 320 ~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~ 395 (433)
...|++++|+..| ++..+| +++.++..+| .++..+|++++|+..|+++++++|++ ....+++..+. ..+.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRP-----EDYSLWNRLG-ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 8889999999999 999999 9999999999 99999999999999999999999998 55555443332 4566
Q ss_pred HHHHHHHHHHHhhcCCC
Q 013948 396 EDITGALRSMMEMFSGP 412 (433)
Q Consensus 396 ~~~~~a~~~~~~~~~~~ 412 (433)
++....++...+.....
T Consensus 298 ~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCccc
Confidence 66666666666655443
No 24
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.6e-22 Score=193.06 Aligned_cols=244 Identities=11% Similarity=0.012 Sum_probs=208.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC---CCHHHHHHH-----
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG---NNAVYYSNR----- 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l----- 218 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|++++..+| ++..++..+
T Consensus 50 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIALKMDF----------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCc----------chHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH
Confidence 589999999999999998887 78999999999999999999999999999999 888888777
Q ss_pred -------HHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 219 -------AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 219 -------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+. .++++++.+|.++.++..+|.++
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS-DLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhcccccccCC-Cccchh-----------------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHH----H
Q 013948 292 QKLREERQRTGWDQTTSS-SHYSQE-----------------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIA----S 347 (433)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~----~ 347 (433)
...|++++|...+..+.. .+.... +..+...|++++|+..+ ++..+| +++ .
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~ 273 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SVAEYTVR 273 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CchHHHHH
Confidence 999999999998777652 222222 44577889999999999 888899 544 5
Q ss_pred HHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 348 MLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 348 a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
++..+| .++...|++++|+..|+++++++|++ ....+++..+. ..+.++....++...+
T Consensus 274 ~~~~la-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 274 SKERIC-HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 577899 99999999999999999999999998 44444443332 3555555445554444
No 25
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=2.9e-22 Score=184.58 Aligned_cols=225 Identities=14% Similarity=0.073 Sum_probs=191.9
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|++++|+..|++++...+.+ ++..+.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALT------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhccccc------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 4699999999999999974321 2445899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
|++++|+.+|+++++++|+++.+++.+|.++...|++++|+. +|+++++++|++......++.+ ...|++++|...+.
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD-DLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLK 168 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999777766655 56688999988875
Q ss_pred ccC-CCccc----hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC
Q 013948 306 TTS-SSHYS----QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 306 ~~~-~~~~~----~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P 378 (433)
.+. ..+.. .....+...+++++|+..+ ++...|. ...+.+.++..+| .++..+|++++|+..|+++++++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 169 QHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS-LAEHLSETNFYLG-KYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccc-ccccccHHHHHHH-HHHHHcCCHHHHHHHHHHHHhCCc
Confidence 543 11211 1245566667778888888 7777771 0013378999999 999999999999999999999999
Q ss_pred Cc
Q 013948 379 GI 380 (433)
Q Consensus 379 ~~ 380 (433)
++
T Consensus 247 ~~ 248 (275)
T 1xnf_A 247 HN 248 (275)
T ss_dssp TT
T ss_pred hh
Confidence 87
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=8.2e-24 Score=214.18 Aligned_cols=255 Identities=14% Similarity=0.076 Sum_probs=205.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
|++++|+..|++++...|.+.. .....+.++..+|.++...|++++|+..|++++..+|+ ..+++.+|.++...|+
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDP---LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHCCCcch---hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcC
Confidence 5889999999999998887621 11234667999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+++|+..|+++++.+|+++.++..+|.++...|++++|+. .|+++++++|+++.++..++.++...|++++|...+..+
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE-DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999988776
Q ss_pred CC-Cccch-----hhhhhhcCCCCCCCCCcc--cccCCCCCCC-ccHHHHHHHHhhcccccC----------CChhhHHH
Q 013948 308 SS-SHYSQ-----ESNQSTGGFRSHGTPPSF--TMPFNTNALP-TDIASMLMNMASNMPQAQ----------PSQSRQGE 368 (433)
Q Consensus 308 ~~-~~~~~-----~~~~~~~~~~~~~A~~~~--al~~~p~~~~-~~~~~a~~~la~~~~~~~----------g~~~~A~~ 368 (433)
.. .+... .+..+...|++++|+..| ++..+|.... ......+..+| .++..+ |++++|+.
T Consensus 371 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA-TILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH-HHHHHHHTC----CCHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH-HHHHHHhhccchhhhHhHHHHHHH
Confidence 52 22222 256788889999999999 7877772111 11223356667 777777 99999999
Q ss_pred HHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHhh
Q 013948 369 DSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMMEM 408 (433)
Q Consensus 369 ~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~~ 408 (433)
.|+++++++|++ ....++...+. ..+.++....++...+.
T Consensus 450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999998 44444333221 34555555555554443
No 27
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=9.1e-23 Score=213.11 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=166.4
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
.|+.+.++.++|.++...|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+++|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccc
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFT 333 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~a 333 (433)
.++..+|++++|+. +|+++++++|++..++.++|.++..+|++++|+..+++ +
T Consensus 85 ~~l~~~g~~~~A~~-~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~--------------------------A 137 (723)
T 4gyw_A 85 NTLKEMQDVQGALQ-CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT--------------------------A 137 (723)
T ss_dssp HHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------H
T ss_pred HHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------H
Confidence 99999999999999 99999999999999999999999999999999887663 6
Q ss_pred ccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 334 MPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 334 l~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
++++| +++.++.++| .++..+|++++|++.|++++++.|+.
T Consensus 138 l~l~P-----~~~~a~~~L~-~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 138 LKLKP-----DFPDAYCNLA-HCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHCS-----CCHHHHHHHH-HHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHhCC-----CChHHHhhhh-hHHHhcccHHHHHHHHHHHHHhChhH
Confidence 78899 9999999999 99999999999999999999988775
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=2.7e-22 Score=181.23 Aligned_cols=192 Identities=16% Similarity=0.128 Sum_probs=176.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++..+|++..++..+|.++...
T Consensus 35 ~~~~~~~A~~~~~~~l~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENKED----------AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp -------CCTTHHHHHTTCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhhCHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 4799999999999999988877 889999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
|++++|+..++++++.+|.++.++..+|.++...|++++|+. .++++++..|.++.++..++.++...|++++|...+.
T Consensus 105 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP-YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999998887765
Q ss_pred ccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 306 TTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
. ++..+| +.+.++..+| .++..+|++++|+..|+++++++|++
T Consensus 184 ~--------------------------~~~~~~-----~~~~~~~~la-~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 184 A--------------------------VTEQDP-----GHADAFYNAG-VTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp H--------------------------HHHHCT-----TCHHHHHHHH-HHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred H--------------------------HHHhCc-----ccHHHHHHHH-HHHHHccCHHHHHHHHHHHHccCcch
Confidence 3 456688 8889999999 99999999999999999999999998
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.8e-22 Score=199.98 Aligned_cols=221 Identities=14% Similarity=0.039 Sum_probs=177.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM---QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 223 (433)
.+++++|+.+|++++.++|++ +.++..+|.+++ ..+++++|++.|+++++++|++..++..+|.++.
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~----------~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKN----------PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 468999999999999999988 788888888754 4577889999999999999999999999998776
Q ss_pred H----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH---
Q 013948 224 Q----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE--- 296 (433)
Q Consensus 224 ~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--- 296 (433)
. .+++++|+.++++++.++|.++.++..+|.++...|++++|+. .|+++++.+|+++.++..+|.++...+.
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~ 299 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE-LLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299 (472)
T ss_dssp HCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHH-HHHHHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence 5 4578899999999999999999999999999999999999999 9999999999999999999999875543
Q ss_pred ----------------HHHhcccccccCC-Ccc-----chhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHH
Q 013948 297 ----------------ERQRTGWDQTTSS-SHY-----SQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNM 352 (433)
Q Consensus 297 ----------------~~~a~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~l 352 (433)
.++|...+..+.. .+. ...+..|...|++++|+..| ++..+| .+.+....+..+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~--~~~~~~~~~~~~ 377 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL--TPVAKQLLHLRY 377 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC--CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC--CChHHHHHHHHH
Confidence 3444444443321 111 12267788889999999999 888887 111222356677
Q ss_pred hhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 353 ASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 353 a~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
|...+...|++++|+..|+++++++|++
T Consensus 378 ~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 378 GNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 7233567899999999999999998876
No 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.2e-22 Score=204.19 Aligned_cols=195 Identities=15% Similarity=0.061 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHH---ccCHHHHHHHHHHHHH-----h--c-------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 013948 178 AEIFKCQGNRVMQ---SQQYSDAIELYSFAIA-----L--C-------GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240 (433)
Q Consensus 178 ~~~~~~lg~~~~~---~~~~~~A~~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 240 (433)
...++.+|.+++. .|++++|+..|++++. + + |.++.+++.+|.++...|++++|+..+++++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444555555444 5556666666666655 3 2 33345555666666666666666666666666
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC-CCccch-----
Q 013948 241 IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS-SSHYSQ----- 314 (433)
Q Consensus 241 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~----- 314 (433)
.+|. +.++..+|.++...|++++|+. .++++++.+|.++.++..++.++...|++++|...+..+. ..+...
T Consensus 266 ~~~~-~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (514)
T 2gw1_A 266 LFPR-VNSYIYMALIMADRNDSTEYYN-YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343 (514)
T ss_dssp HCCC-HHHHHHHHHHHHTSSCCTTGGG-HHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred hCcc-HHHHHHHHHHHHHCCCHHHHHH-HHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH
Confidence 6665 5566666666666666666666 6666666666666666666666666666555555554443 111111
Q ss_pred hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 315 ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 315 ~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+..+...|++++|+..| ++..+| +++.++..+| .++...|++++|+..|+++++++|++
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la-~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRKFP-----EAPEVPNFFA-EILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHHST-----TCSHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcc-----cCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 134455556666665555 555555 5555555566 55556666666666666665555555
No 31
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=7.2e-22 Score=198.01 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=154.1
Q ss_pred cchH-HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQV-DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|++ ++|+.+|+++++.+|.+ ..+|+.+|.++...|++++|+.+|+++++++|+ ..++.++|.++..+
T Consensus 115 ~g~~~~~A~~~~~~al~~~p~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~ 183 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKLEPEL----------VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQL 183 (474)
T ss_dssp SSSCCHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHh
Confidence 5788 88888888888888877 788888888888888888888888888888887 68888888888888
Q ss_pred ---------hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhCC---CCHHHHH
Q 013948 226 ---------HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ--------GNYNDAIEKGFKKALQLDP---NNEAVKE 285 (433)
Q Consensus 226 ---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~~al~~~p---~~~~~~~ 285 (433)
|++++|+..|+++++++|+++.+|+.+|.++..+ |++++|+. +|+++++++| +++.++.
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~ 262 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS-AYAQAEKVDRKASSNPDLHL 262 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHCGGGGGCHHHHH
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH-HHHHHHHhCCCcccCHHHHH
Confidence 8888888888888888888888888888888888 88888888 8888888888 8888888
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhh
Q 013948 286 NIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSR 365 (433)
Q Consensus 286 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~ 365 (433)
++|.++..+|++++|...+.. ++.++| +++.++..++ .++..+|++++
T Consensus 263 ~lg~~~~~~g~~~~A~~~~~~--------------------------al~l~p-----~~~~a~~~l~-~~~~~lg~~~e 310 (474)
T 4abn_A 263 NRATLHKYEESYGEALEGFSQ--------------------------AAALDP-----AWPEPQQREQ-QLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH--------------------------HHHHCT-----TCHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH--------------------------HHHhCC-----CCHHHHHHHH-HHHHHHHHHHH
Confidence 888888888888887776553 566788 8888888888 88888888888
Q ss_pred HHHHHhhh
Q 013948 366 QGEDSNVS 373 (433)
Q Consensus 366 A~~~~~~a 373 (433)
|+..+.+.
T Consensus 311 Ai~~~~~~ 318 (474)
T 4abn_A 311 LLESKGKT 318 (474)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccc
Confidence 88877554
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=6.2e-21 Score=165.51 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=145.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++++|++ ..++..+|.++...|++++|+..+.+++...|++..++..+|.++...+
T Consensus 18 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVLKADPNN----------VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID 87 (184)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC
Confidence 699999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+++.|+..+.+++.++|+++.++..+|.++..+|++++|+. +|+++++++|.++.++..+|.++..+|++++|..++++
T Consensus 88 ~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 88 EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIE-AYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHH-HHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999988764
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.5e-21 Score=177.66 Aligned_cols=187 Identities=13% Similarity=0.191 Sum_probs=166.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-------AVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la 219 (433)
.|++++|+.+|++++... .+ ..++..+|.++...|++++|+..|.+++.++|++ +.+++.+|
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KD----------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CC----------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh-cc----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 589999999999999987 54 7889999999999999999999999999998877 78999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHh--------------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSID--------------------------IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
.++...|++++|+..|++++. .+|.++.++..+|.++...|++++|+. +|+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a 165 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK-AYTEM 165 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH-HHHHH
Confidence 999999999999999999999 666777888888888888888888888 88888
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHh
Q 013948 274 LQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMA 353 (433)
Q Consensus 274 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la 353 (433)
++.+|.++.++..+|.++...|++++|...+.. ++..+| +++.++..+|
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------------------------al~~~~-----~~~~~~~~l~ 214 (258)
T 3uq3_A 166 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNK--------------------------AIEKDP-----NFVRAYIRKA 214 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHHCT-----TCHHHHHHHH
T ss_pred HhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH--------------------------HHHhCH-----HHHHHHHHHH
Confidence 888888888888888888888888877776552 566789 8899999999
Q ss_pred hcccccCCChhhHHHHHhhhcCCC
Q 013948 354 SNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
.++..+|++++|+..|+++++++
T Consensus 215 -~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 215 -TAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp -HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999
No 34
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=2e-21 Score=174.84 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCG-NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
+..++.+|.+++..|++++|+..|++++.++| .+..+++++|.++...|++++|+..|+++++++|+++.+++.+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 57899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCC
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNE-------AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTP 329 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 329 (433)
..+|++++|+. +|+++++++|+++ .++..+|.++..+|++++|...+.+
T Consensus 87 ~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~----------------------- 142 (228)
T 4i17_A 87 RDMKNNQEYIA-TLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH----------------------- 142 (228)
T ss_dssp HHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred HHcccHHHHHH-HHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH-----------------------
Confidence 99999999999 9999999999999 5577777777777777766666542
Q ss_pred CcccccCCCCCCCcc--HHHHHHHHhhcccccCCCh---------------------------hhHHHHHhhhcCCCCCc
Q 013948 330 PSFTMPFNTNALPTD--IASMLMNMASNMPQAQPSQ---------------------------SRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 330 ~~~al~~~p~~~~~~--~~~a~~~la~~~~~~~g~~---------------------------~~A~~~~~~al~l~P~~ 380 (433)
++..+| + ++.++.++| .++..+|+. ++|+..|+++++++|++
T Consensus 143 ---al~~~p-----~~~~~~~~~~l~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 143 ---ATDVTS-----KKWKTDALYSLG-VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp ---HTTSSC-----HHHHHHHHHHHH-HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ---HHhcCC-----CcccHHHHHHHH-HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 677899 9 899999999 999988888 99999999999999997
No 35
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.86 E-value=7.1e-21 Score=169.25 Aligned_cols=169 Identities=15% Similarity=0.074 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSN----------------RAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
...++..|..++..|++++|+..|++++..+|+++.+|+. +|.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6678899999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH--HhcccccccCCCccchhhhhh
Q 013948 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER--QRTGWDQTTSSSHYSQESNQS 319 (433)
Q Consensus 242 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~ 319 (433)
+|+++.+++.+|.++...|++++|+. +|+++++++|+++.++..+|.++...|... .+...+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~------------- 149 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALR-MYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKK------------- 149 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------------
Confidence 99999999999999999999999999 999999999999999999999998877643 33333331
Q ss_pred hcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 320 TGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 320 ~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
++ .| .....+++.+| .++..+|++++|+.+|+++++++|+.
T Consensus 150 -------------~~--~~----~~~~~a~~~~g-~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 150 -------------LS--SP----TKMQYARYRDG-LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -----------------CC----CHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -------------Hh--CC----CchhHHHHHHH-HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 11 23 03334677888 88888999999999999999999985
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=8e-23 Score=192.90 Aligned_cols=216 Identities=13% Similarity=0.105 Sum_probs=195.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+.+|++++..+|.+ ..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|
T Consensus 34 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAPER----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 589999999999999998887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRL--------------GL-AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~l--------------g~-~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
++++|+..++++++.+|.+...+..+ +. ++...|++++|+. .++++++.+|.++.++..++.++
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT-LLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHH-HHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH-HHHHHHhhCCCCHHHHHHHHHHH
Confidence 99999999999999999998888877 77 7889999999999 99999999999999999999999
Q ss_pred HHHHHHHHhcccccccCC-Cccchh-----hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCCh
Q 013948 292 QKLREERQRTGWDQTTSS-SHYSQE-----SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQ 363 (433)
Q Consensus 292 ~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~ 363 (433)
...|++++|...+..+.. .+.... +..+...|++++|+..| ++..+| +++.++..+| .++..+|++
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~-~~~~~~g~~ 256 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-----GYVRVMYNMA-VSYSNMSQY 256 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHHHTTCH
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHH-HHHHHhccH
Confidence 999999999998877652 222222 56788889999999999 999999 9999999999 999999999
Q ss_pred hhHHHHHhhhcCCCCC
Q 013948 364 SRQGEDSNVSGSDEPG 379 (433)
Q Consensus 364 ~~A~~~~~~al~l~P~ 379 (433)
++|+..|+++++++|+
T Consensus 257 ~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999999999
No 37
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=1.4e-20 Score=171.42 Aligned_cols=191 Identities=19% Similarity=0.124 Sum_probs=180.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|++++..+|.+..+++.+|.++...|
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSS----------ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 589999999999999998877 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSID--IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
++++|+..+++++. ..|.++.++..+|.++...|++++|+. +|+++++.+|.+..++..++.++...|++++|...+
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE-YFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999 889999999999999999999999999 999999999999999999999999999999988876
Q ss_pred cccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 305 QTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.. ++..+| +...++..++ .++...|++++|...++++++++|++
T Consensus 199 ~~--------------------------~~~~~~-----~~~~~~~~~~-~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 199 DL--------------------------FAQGGG-----QNARSLLLGI-RLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HH--------------------------HHTTSC-----CCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HH--------------------------HHHhCc-----CcHHHHHHHH-HHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 63 456778 8888999999 99999999999999999999999997
No 38
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=2.4e-21 Score=163.04 Aligned_cols=143 Identities=10% Similarity=0.014 Sum_probs=131.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013948 142 DGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA 221 (433)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 221 (433)
......|++++|+..+++++...|.+ +..++.+|.+|+..|+|++|+.+|+++++++|+++.+|+++|.+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~----------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQK----------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLL 74 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHH----------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCccc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33446799999999999999988876 88899999999999999999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 222 YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKG-FKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 222 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
+..+|++++|+.+|+++++++|+++.+++.+|.++...|++++|.. . ++++++++|+++.++..++.++...|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~-~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK-YWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH-HHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999988776 5 59999999999999998888776544
No 39
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.86 E-value=1.9e-21 Score=195.00 Aligned_cols=198 Identities=13% Similarity=0.095 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQY-SDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
.+++++..+++.....|.+ +.+++.+|.++...|++ ++|+..|+++++++|+++.+|+.+|.+|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~----------a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVE----------AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCC----------HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCchh----------HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 4556666666555544444 89999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH----
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ---------GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL---- 294 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~---- 294 (433)
+++|+.+|+++++++|+ ..++..+|.++..+ |++++|+. +|+++++++|+++.+|..+|.++..+
T Consensus 153 ~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR-QAKLAVQMDVLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999 79999999999999 99999999 99999999999999999999999999
Q ss_pred ----HHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 295 ----REERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 295 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
|++++|...+.++ +.++|. ..+++.+|+++| .++..+|++++|+..|
T Consensus 231 ~~~~g~~~~A~~~~~~a--------------------------l~~~p~--~~~~~~~~~~lg-~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 231 GQNPKISQQALSAYAQA--------------------------EKVDRK--ASSNPDLHLNRA-TLHKYEESYGEALEGF 281 (474)
T ss_dssp TCCHHHHHHHHHHHHHH--------------------------HHHCGG--GGGCHHHHHHHH-HHHHHTTCHHHHHHHH
T ss_pred ccccchHHHHHHHHHHH--------------------------HHhCCC--cccCHHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999998887743 334440 116788999999 9999999999999999
Q ss_pred hhhcCCCCCc-ccccccc
Q 013948 371 NVSGSDEPGI-RIGGNIN 387 (433)
Q Consensus 371 ~~al~l~P~~-~~~~~~~ 387 (433)
+++++++|++ ....++.
T Consensus 282 ~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 282 SQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHH
Confidence 9999999999 4444433
No 40
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=4.8e-21 Score=179.56 Aligned_cols=189 Identities=9% Similarity=-0.005 Sum_probs=168.3
Q ss_pred cchHHHHHHHHHHHHHH--HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINE--MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ 224 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 224 (433)
.+++++|++.+++.+.. +|.+ +.+++.+|.++...|++++|+..|++ |++..++..+|.++..
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~----------~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTN----------TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLK 142 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSC----------HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHH
Confidence 57899999999999876 4776 88999999999999999999999998 8999999999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcc
Q 013948 225 IHQYAEAVRDCLKSIDIDPNYSKAYSRLG--LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTG 302 (433)
Q Consensus 225 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 302 (433)
+|++++|+..++++++.+|++....+..+ .++...|++++|+. .|+++++.+|+++.++.++|.++..+|++++|..
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~-~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY-IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHH-HHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999875555444 33334589999999 9999999999999999999999999999999988
Q ss_pred cccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhh-HHHHHhhhcCCCCCcc
Q 013948 303 WDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSR-QGEDSNVSGSDEPGIR 381 (433)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~-A~~~~~~al~l~P~~~ 381 (433)
.++. ++..+| +++.++.++| .++..+|+.++ +..+++++++++|++.
T Consensus 222 ~l~~--------------------------al~~~p-----~~~~~l~~l~-~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 222 VLQE--------------------------ALDKDS-----GHPETLINLV-VLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHH--------------------------HHHHCT-----TCHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHH--------------------------HHHhCC-----CCHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 7663 677899 9999999999 99999999987 5688899999999984
Q ss_pred cc
Q 013948 382 IG 383 (433)
Q Consensus 382 ~~ 383 (433)
..
T Consensus 270 ~~ 271 (291)
T 3mkr_A 270 FI 271 (291)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=1.2e-20 Score=170.47 Aligned_cols=172 Identities=13% Similarity=0.186 Sum_probs=155.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..++++++..|.+ ..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSA----------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE 139 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHHcCCcc----------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999998877 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..++++++.+|+++.+++.+|.++...|++++|+. .++++++.+|.++.++..++.++...|++++|..++..
T Consensus 140 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS-QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999998888877653
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP 361 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g 361 (433)
++..+| +++.++..++ .+....|
T Consensus 219 --------------------------~~~~~p-----~~~~~~~~~~-~l~~~~~ 241 (243)
T 2q7f_A 219 --------------------------AIDIQP-----DHMLALHAKK-LLGHHHH 241 (243)
T ss_dssp --------------------------HHHHCT-----TCHHHHHHHT-C------
T ss_pred --------------------------HHccCc-----chHHHHHHHH-HHHhhcc
Confidence 566788 8888888888 6554443
No 42
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=8.5e-21 Score=179.22 Aligned_cols=194 Identities=10% Similarity=0.013 Sum_probs=172.0
Q ss_pred chHHHHHHHHHHHHH-HHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHh
Q 013948 148 SQVDKASRIFHDAIN-EMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV-YYSNRAAAYTQI 225 (433)
Q Consensus 148 g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~ 225 (433)
+.+++|+..|++++. +.|.+ ..+|..+|.++...|++++|+..|+++++++|.++. +|.++|.++...
T Consensus 78 ~~~~~A~~~~~rAl~~~~p~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 147 (308)
T 2ond_A 78 LFSDEAANIYERAISTLLKKN----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 147 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh
Confidence 456999999999999 68887 889999999999999999999999999999999987 999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA-QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
|++++|+..|+++++.+|....+|...+.+... .|++++|+. .|+++++.+|+++.+|..++..+...|+.++|...+
T Consensus 148 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 226 (308)
T 2ond_A 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK-IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 226 (308)
T ss_dssp HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999998888877777544 799999999 999999999999999999999999999999988887
Q ss_pred cccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 305 QTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+.+... ..++| .+....|..++ .++...|+.++|...++++++..|++
T Consensus 227 ~~al~~-----------------------~~l~p----~~~~~l~~~~~-~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 227 ERVLTS-----------------------GSLPP----EKSGEIWARFL-AFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHS-----------------------SSSCG----GGCHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhc-----------------------cCCCH----HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 743211 01244 13677888889 88889999999999999999999986
No 43
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.84 E-value=5.4e-20 Score=149.97 Aligned_cols=117 Identities=32% Similarity=0.510 Sum_probs=112.9
Q ss_pred hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 174 QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 174 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
+|..+.++..+|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.++..+|++++|+. +|+++++++|++..++..|+.++
T Consensus 89 ~~~~~~~~~~~A~~-~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQR-AYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHH-HHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999 99999999999999999998764
No 44
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=1.5e-19 Score=162.46 Aligned_cols=192 Identities=14% Similarity=0.154 Sum_probs=164.8
Q ss_pred cchHHHHHHHHHHHHHHHh-hccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEME-KSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
.|++++|+..|+++++..| .+ ..+++.+|.++...|++++|+..|++++..+|++..+++.+|.++..+
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 89 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQD----------SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM 89 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHhccCCCC----------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc
Confidence 5999999999999999998 55 678888999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHH
Q 013948 226 HQYAEAVRDCLKSIDIDPNYS-------KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLRE 296 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~ 296 (433)
|++++|+..|+++++++|+++ .+++.+|.++...|++++|+. +|+++++++|+ ++.++..+|.++...|+
T Consensus 90 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 168 (228)
T 4i17_A 90 KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHATDVTSKKWKTDALYSLGVLFYNNGA 168 (228)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 679999999999999999999 99999999999 99999999999999988
Q ss_pred H--HHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccc
Q 013948 297 E--RQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 297 ~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
. +++...... .+...........+.|++|+..| +++++| +++.+...++ .+..
T Consensus 169 ~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p-----~~~~~~~~l~-~i~~ 225 (228)
T 4i17_A 169 DVLRKATPLASS---NKEKYASEKAKADAAFKKAVDYLGEAVTLSP-----NRTEIKQMQD-QVKA 225 (228)
T ss_dssp HHHHHHGGGTTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHH-HHHT
T ss_pred HHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCHHHHHHHH-HHHH
Confidence 6 443332211 11111222333346677888888 999999 8888888887 5543
No 45
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=4.9e-20 Score=192.50 Aligned_cols=150 Identities=20% Similarity=0.267 Sum_probs=145.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++++|++ +.+++.+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|
T Consensus 22 ~G~~~eAi~~~~kAl~l~P~~----------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g 91 (723)
T 4gyw_A 22 QGNIEEAVRLYRKALEVFPEF----------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 91 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 799999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|+++.+|+++|.++..+|++++|+. +|+++++++|+++.++.+++.++..+|++++|...+++
T Consensus 92 ~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~-~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA-SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999998888777654
Q ss_pred c
Q 013948 307 T 307 (433)
Q Consensus 307 ~ 307 (433)
+
T Consensus 171 a 171 (723)
T 4gyw_A 171 L 171 (723)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.7e-19 Score=163.95 Aligned_cols=157 Identities=18% Similarity=0.205 Sum_probs=144.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIA-------------------- 206 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------------------- 206 (433)
.|++++|+..+++++...|.... ..+....++..+|.++...|++++|+..|++++.
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGREMRA---DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK 127 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccccc---chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence 58999999999999999987521 1233478999999999999999999999999999
Q ss_pred ------hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 207 ------LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 207 ------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
.+|.++.+++.+|.++...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+. +++++++.+|++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~~~ 206 (258)
T 3uq3_A 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA-DCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhCHHH
Confidence 6667788999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 281 EAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
+.++..+|.++..+|++++|..++..+
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999998887743
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.83 E-value=3.9e-19 Score=158.08 Aligned_cols=192 Identities=14% Similarity=0.026 Sum_probs=171.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI- 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 225 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..|.+++..+|++..++..+|.++...
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSDPKN----------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHHHHhCccc----------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc
Confidence 589999999999999998877 789999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 013948 226 HQYAEAVRDCLKSID--IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 226 ~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
|++++|+..++++++ ..|.+..+++.+|.++...|++++|+. +++++++..|.++.++..++.++...|++++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA-YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999 677788999999999999999999999 99999999999999999999999999999998887
Q ss_pred ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 304 DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
+..+ +..+| .+...++..++ .++...|+.++|...++.+++.+|++
T Consensus 170 ~~~~--------------------------~~~~~----~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 170 FKKY--------------------------QSRVE----VLQADDLLLGW-KIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp HHHH--------------------------HHHHC----SCCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHH--------------------------HHhCC----CCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 6642 22333 13345666777 88889999999999999998899987
No 48
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=7.2e-20 Score=191.45 Aligned_cols=190 Identities=12% Similarity=0.011 Sum_probs=167.8
Q ss_pred CcchHHHHHHHHHHHH--------HHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHH
Q 013948 146 DPSQVDKASRIFHDAI--------NEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSN 217 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 217 (433)
..|++++|++.+++++ ..+|.+ ..+++.+|.++...|++++|+..|+++++.+|++..+|++
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 472 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSES----------VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWY 472 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTC----------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccc----------hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHH
Confidence 3689999999999999 777776 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
+|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++ +. +|+++++++|++..++.++|.++..+|++
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~-~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HK-FYQTVWSTNDGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TC-HHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HH-HHHHHHHhCCchHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999 99 99999999999999999999999999999
Q ss_pred HHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC--------hhhHHHH
Q 013948 298 RQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS--------QSRQGED 369 (433)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~--------~~~A~~~ 369 (433)
++|...+.+ ++.++| ++..+++++| .++...++ +++|...
T Consensus 551 ~~A~~~~~~--------------------------al~l~P-----~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~A~~~ 598 (681)
T 2pzi_A 551 VGAVRTLDE--------------------------VPPTSR-----HFTTARLTSA-VTLLSGRSTSEVTEEQIRDAARR 598 (681)
T ss_dssp HHHHHHHHT--------------------------SCTTST-----THHHHHHHHH-HHTC-------CCHHHHHHHHHH
T ss_pred HHHHHHHHh--------------------------hcccCc-----ccHHHHHHHH-HHHHccCCCCCCCHHHHHHHHHH
Confidence 999887763 677899 9999999999 88877665 4555555
Q ss_pred HhhhcCCCCC
Q 013948 370 SNVSGSDEPG 379 (433)
Q Consensus 370 ~~~al~l~P~ 379 (433)
+.+....+|.
T Consensus 599 l~~~~~~~~~ 608 (681)
T 2pzi_A 599 VEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTT
T ss_pred HhhCCCCcHH
Confidence 5444333333
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=5.2e-20 Score=169.42 Aligned_cols=202 Identities=15% Similarity=-0.008 Sum_probs=166.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..++..+|.++...|++++|+.+|++++.++|++..+++.+|.++...|
T Consensus 56 ~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 125 (275)
T 1xnf_A 56 LGLRALARNDFSQALAIRPDM----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHcCCCc----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc
Confidence 589999999999999999887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..|+++++++|++......++.+ ...|++++|+. .+++++...|.+...+. ++.++...++.++|...+..
T Consensus 126 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 126 RDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKE-VLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHH-HHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHH-HHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999777776655 66799999999 99999999998876655 55555555556677766665
Q ss_pred cCCCccc----------hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHH
Q 013948 307 TSSSHYS----------QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDS 370 (433)
Q Consensus 307 ~~~~~~~----------~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~ 370 (433)
+...... ..+..|...|++++|+..| ++..+| ++...+ + .++..+|++++|+.+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~---~-~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 203 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV-----HNFVEH---R-YALLELSLLGQDQDDL 269 (275)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-----TTCHHH---H-HHHHHHHHHHHC----
T ss_pred HhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc-----hhHHHH---H-HHHHHHHHHHhhHHHH
Confidence 5432221 1156788889999999999 999999 654433 5 5577889999999887
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=2.1e-20 Score=172.00 Aligned_cols=219 Identities=13% Similarity=0.075 Sum_probs=181.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN----AVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 222 (433)
.|++++|+..|+++++.+|.+ ..+++.+|.++...|++++|+..|++++. .|.+ ..+++.+|.++
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNS----------PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCC----------STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHH
Confidence 589999999999999999887 67899999999999999999999999999 4444 45699999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHHHHHHHhc
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR-MAEQKLREERQRT 301 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~a~ 301 (433)
...|++++|+.+|+++++++|.++.++..+|.++...|++++|+. +|+++++++|.++.++..+| .++. .+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ-YMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH-HHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999 99999999999999999999 5554 44777776
Q ss_pred ccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC---hhhHHHHHhhhcCCC-
Q 013948 302 GWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS---QSRQGEDSNVSGSDE- 377 (433)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~---~~~A~~~~~~al~l~- 377 (433)
..+.. ++..+| +++.++..+| .++..+|+ +++|+..|++++++.
T Consensus 163 ~~~~~--------------------------a~~~~p-----~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 163 SSFVK--------------------------VLELKP-----NIYIGYLWRA-RANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HHHHH--------------------------HHHHST-----TCHHHHHHHH-HHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHHHH--------------------------HHHhCc-----cchHHHHHHH-HHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 65542 677889 8899999999 99999999 999999999999886
Q ss_pred --CCc------ccccccccccc-cCCcHHHHHHHHHHHhhcC
Q 013948 378 --PGI------RIGGNINLNFG-ENMPEDITGALRSMMEMFS 410 (433)
Q Consensus 378 --P~~------~~~~~~~~~l~-~~~~~~~~~a~~~~~~~~~ 410 (433)
|+. .....++.... ..+.++....++...+..+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 442 11112221111 4566666666666665543
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=4.5e-21 Score=187.55 Aligned_cols=227 Identities=13% Similarity=0.071 Sum_probs=168.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------CGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~ 220 (433)
.|++++|+.++++++....... ..+....++..+|.++...|++++|+.+|.+++.+ .|....++.++|.
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMN----DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcc----CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 4788888888888888753321 22444778888888888888888888888888887 4555678888888
Q ss_pred HHHHhhc-----------------HHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Q 013948 221 AYTQIHQ-----------------YAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD 277 (433)
Q Consensus 221 ~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~ 277 (433)
++...|+ +++|+.++++++++. +....++..+|.++...|++++|+. ++++++++.
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~ 253 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE-HHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHH
Confidence 8888888 888888888887763 3345678888888888888888888 888888876
Q ss_pred CCCHH------HHHHHHHHHHHHHHHHHhcccccccCCCcc------------chhhhhhhcCCCCCCCCCcc--cccCC
Q 013948 278 PNNEA------VKENIRMAEQKLREERQRTGWDQTTSSSHY------------SQESNQSTGGFRSHGTPPSF--TMPFN 337 (433)
Q Consensus 278 p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~--al~~~ 337 (433)
|.... ++..++.++...|++++|..++..+..... ...+..|...|++++|+..+ ++...
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 64332 778888888888888888887665542111 01145677778888888888 66554
Q ss_pred CC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 338 TN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 338 p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
+. ..+.....++..+| .++..+|++++|+..|++++++.+.
T Consensus 334 ~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 334 QELGDRIGEARACWSLG-NAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHCCChHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHhh
Confidence 31 01125577999999 9999999999999999999887655
No 52
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.82 E-value=4.4e-19 Score=166.15 Aligned_cols=189 Identities=11% Similarity=0.065 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRV----MQS---QQYSDAIELYSFAIALCGNNAVYYSNRAAA 221 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 221 (433)
++++++.++.++|..+|++ ..+|+.++.++ ... +++++++.++.++++.+|.+..+|+.++.+
T Consensus 84 ~~~eeL~~~~~~L~~nPk~----------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~v 153 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKN----------YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWL 153 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTC----------CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCccc----------HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999999998 89999999998 666 789999999999999999999999999999
Q ss_pred HHHhhcHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 222 YTQIHQYA--EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN------YNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 222 ~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
+...|.++ ++++++.++++.+|.|..+|..++.++...+. ++++++ ++.+++..+|++..+|..++.++..
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~-~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN-YVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH-HHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH-HHHHHHHhCCCCccHHHHHHHHHHh
Confidence 99999998 99999999999999999999999999999988 999999 9999999999999999999999988
Q ss_pred HHHHHHhcc-cccccCCCccchhhhhhhcCCCCCCCCCcccccC---CCCCCCccHHHHHHHHhhcccccCCChhhHHHH
Q 013948 294 LREERQRTG-WDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF---NTNALPTDIASMLMNMASNMPQAQPSQSRQGED 369 (433)
Q Consensus 294 ~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~---~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~ 369 (433)
.|+...+.. +... .+.+ +| ..+.++..++ .++..+|+.++|+++
T Consensus 233 ~~~~~~~~~~~~~~--------------------------~~~~~~~~~-----~s~~al~~la-~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 233 FDRSITQLEEFSLQ--------------------------FVDLEKDQV-----TSSFALETLA-KIYTQQKKYNESRTV 280 (306)
T ss_dssp TTCCGGGGHHHHHT--------------------------TEEGGGTEE-----SCHHHHHHHH-HHHHHTTCHHHHHHH
T ss_pred cCCChHHHHHHHHH--------------------------HHhccCCCC-----CCHHHHHHHH-HHHHccCCHHHHHHH
Confidence 776332221 2221 2222 36 7889999999 999999999999999
Q ss_pred HhhhcC-CCCCc
Q 013948 370 SNVSGS-DEPGI 380 (433)
Q Consensus 370 ~~~al~-l~P~~ 380 (433)
|+++.+ .||..
T Consensus 281 ~~~l~~~~Dpir 292 (306)
T 3dra_A 281 YDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHTTCGGG
T ss_pred HHHHHhccChHH
Confidence 999986 89986
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.81 E-value=7.2e-21 Score=185.06 Aligned_cols=227 Identities=15% Similarity=0.061 Sum_probs=162.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+.++++++...+... ..+....++..+|.++...|++++|+..|.+++.+.|.. ..++..+|.
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIG----DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 4778888888888877754431 234456777888888888888888888888887775543 457778888
Q ss_pred HHHHhhc--------------------HHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 221 AYTQIHQ--------------------YAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 221 ~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
++...|+ +++|+..+.+++.+ .|....++..+|.++...|++++|+. ++++++
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 214 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI-AHEQRL 214 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH-HHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH-HHHHHH
Confidence 8888888 88888888887776 33445677788888888888888888 888887
Q ss_pred hhCCCCHH------HHHHHHHHHHHHHHHHHhcccccccCCCcc------------chhhhhhhcCCCCCCCCCcc--cc
Q 013948 275 QLDPNNEA------VKENIRMAEQKLREERQRTGWDQTTSSSHY------------SQESNQSTGGFRSHGTPPSF--TM 334 (433)
Q Consensus 275 ~~~p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~--al 334 (433)
++.|.... ++..+|.++...|++++|..++..+..... ...+..|...|++++|+..| ++
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 76554332 777788888888888877777665442110 01145566778888888777 55
Q ss_pred cCCCC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 335 PFNTN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 335 ~~~p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
...+. ..+...+.++..+| .++..+|++++|+.+|++++++.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLG-NAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 55331 01125578999999 9999999999999999999987544
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.81 E-value=8.2e-21 Score=178.96 Aligned_cols=227 Identities=15% Similarity=0.066 Sum_probs=166.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+.++++++...+... ..+....++..+|.++...|++++|+..|.+++.+.+.. ..++..+|.
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 131 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIG----DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 131 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhccc----ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 5889999999999988865432 234457888999999999999999999999998876543 448889999
Q ss_pred HHHHhhc--------------------HHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 221 AYTQIHQ--------------------YAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 221 ~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
++...|+ +++|+..+++++.+ .+....++..+|.++...|++++|+. ++++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~ 210 (338)
T 3ro2_A 132 VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI-AHEQRL 210 (338)
T ss_dssp HHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHH
T ss_pred HHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHH
Confidence 9999999 99999999998876 33446788889999999999999999 999998
Q ss_pred hhCCCC------HHHHHHHHHHHHHHHHHHHhcccccccCCCccc------------hhhhhhhcCCCCCCCCCcc--cc
Q 013948 275 QLDPNN------EAVKENIRMAEQKLREERQRTGWDQTTSSSHYS------------QESNQSTGGFRSHGTPPSF--TM 334 (433)
Q Consensus 275 ~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~~~~~~~A~~~~--al 334 (433)
++.+.. ..++..++.++...|++++|..++..+...... ..+..|...|++++|+..+ ++
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 875542 237888999999999999988887655421110 0134556667777777766 54
Q ss_pred cCCCC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 335 PFNTN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 335 ~~~p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
...+. ..+.....++..+| .++..+|++++|...+++++++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLG-NAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHhcCCcHHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHh
Confidence 44331 01123455777777 7777777777777777777776654
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.81 E-value=2.6e-19 Score=159.23 Aligned_cols=202 Identities=12% Similarity=0.070 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
+..+.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCc
Q 013948 255 AYYAQ-GNYNDAIEKGFKKALQ--LDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPS 331 (433)
Q Consensus 255 ~~~~~-g~~~~A~~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 331 (433)
++... |++++|+. +++++++ ..|.+..++..++.++...|++++|...+..
T Consensus 85 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------------------------- 138 (225)
T 2vq2_A 85 FLCGRLNRPAESMA-YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR------------------------- 138 (225)
T ss_dssp HHHTTTCCHHHHHH-HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------------
T ss_pred HHHHhcCcHHHHHH-HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------------
Confidence 99999 99999999 9999999 6777789999999999999999998887653
Q ss_pred ccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCC-Ccccccccccccc--cCCcHHHHHHHHHHHhh
Q 013948 332 FTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEP-GIRIGGNINLNFG--ENMPEDITGALRSMMEM 408 (433)
Q Consensus 332 ~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~~~~l~--~~~~~~~~~a~~~~~~~ 408 (433)
++..+| +++.++..+| .++...|++++|+..++++++.+| ++......+..+. ....+.....++.+.+.
T Consensus 139 -~~~~~~-----~~~~~~~~la-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 139 -SLAAQP-----QFPPAFKELA-RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp -HHHHST-----TCHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHhCC-----CCchHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 456788 8889999999 999999999999999999999999 7722222232221 45555555555555544
Q ss_pred c
Q 013948 409 F 409 (433)
Q Consensus 409 ~ 409 (433)
.
T Consensus 212 ~ 212 (225)
T 2vq2_A 212 F 212 (225)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.81 E-value=8.8e-19 Score=164.12 Aligned_cols=202 Identities=12% Similarity=0.065 Sum_probs=165.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+..|++++.+.+..+ ..+..+.++..+|.++...|++++|+.+|++++.+.|.. ..++.++|.
T Consensus 50 ~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 50 RKELNLAGDSFLKAADYQKKAG----NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6999999999999999987652 223457899999999999999999999999999998754 568999999
Q ss_pred HHHHh-hcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH-------HHHH
Q 013948 221 AYTQI-HQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA-------VKEN 286 (433)
Q Consensus 221 ~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~-------~~~~ 286 (433)
+|... |++++|+.+|++++++.|.. ..++..+|.++..+|+|++|+. +|++++++.|++.. ++.+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHhcCCcccHHHHHHHHH
Confidence 99996 99999999999999998754 5689999999999999999999 99999999987653 6788
Q ss_pred HHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc--cCCChh
Q 013948 287 IRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ--AQPSQS 364 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~--~~g~~~ 364 (433)
+|.++..+|++++|...+.. ++.++|..........+..++ ..+. ..++++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~--------------------------al~l~p~~~~~~~~~~l~~l~-~~~~~~~~~~~~ 257 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQE--------------------------GQSEDPNFADSRESNFLKSLI-DAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHG--------------------------GGCC---------HHHHHHHH-HHHHTTCTTTHH
T ss_pred HHHHHHHcCCHHHHHHHHHH--------------------------HHhhCCCCCCcHHHHHHHHHH-HHHHcCCHHHHH
Confidence 99999999999999888764 455666211112223445555 4443 678899
Q ss_pred hHHHHHhhhcCCCCCc
Q 013948 365 RQGEDSNVSGSDEPGI 380 (433)
Q Consensus 365 ~A~~~~~~al~l~P~~ 380 (433)
+|+..|.+++.++|..
T Consensus 258 ~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTSSCCCHHH
T ss_pred HHHHHhccCCccHHHH
Confidence 9999999999999985
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=5e-19 Score=160.97 Aligned_cols=199 Identities=14% Similarity=0.090 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccccc
Q 013948 258 AQGNYNDAIEKGFKKALQ--LDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMP 335 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~ 335 (433)
..|++++|+. +++++++ ..|.+..++..++.++...|++++|..++.. ++.
T Consensus 117 ~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------~~~ 169 (252)
T 2ho1_A 117 EQKRYEEAYQ-RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK--------------------------SLR 169 (252)
T ss_dssp HTTCHHHHHH-HHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHH
T ss_pred HHhHHHHHHH-HHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------HHh
Confidence 9999999999 9999999 8899999999999999999999998887663 456
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHhhc
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMMEMF 409 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~~~ 409 (433)
.+| +++.++..+| .++..+|++++|+..++++++.+|++ .....+...+. ..+.++....++.+.+..
T Consensus 170 ~~~-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 170 LNR-----NQPSVALEMA-DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HCS-----CCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCc-----ccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 678 8889999999 99999999999999999999999988 33332222221 456666666666666554
No 58
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=2.3e-19 Score=154.28 Aligned_cols=172 Identities=14% Similarity=0.101 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
....++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccC
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF 336 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~ 336 (433)
...|++++|+. +++++++.+|.++.++..++.++...|++++|...+.. ++..
T Consensus 87 ~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~--------------------------~~~~ 139 (186)
T 3as5_A 87 VQVQKYDLAVP-LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI--------------------------ALGL 139 (186)
T ss_dssp HHHTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHH
T ss_pred HHhcCHHHHHH-HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH--------------------------HHhc
Confidence 99999999999 99999999999999999999999999999998887663 4556
Q ss_pred CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCcc
Q 013948 337 NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGIR 381 (433)
Q Consensus 337 ~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~~ 381 (433)
+| +.+.++..+| .++..+|++++|+..++++++++|++.
T Consensus 140 ~~-----~~~~~~~~la-~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 140 RP-----NEGKVHRAIA-FSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp CT-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred Cc-----cchHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 78 8889999999 999999999999999999999999873
No 59
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=168.03 Aligned_cols=224 Identities=18% Similarity=0.230 Sum_probs=181.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC--------GNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l 218 (433)
.|++++|+.++++++++..... ....+....++..+|.++...|++++|+..|++++... |....++..+
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 117 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 6999999999999999754421 01134558899999999999999999999999999883 5557899999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------CCCCHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDID--------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--------DPNNEA 282 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--------~p~~~~ 282 (433)
|.++...|++++|+.++++++.+. |....++..+|.++...|++++|+. +|++++++ .|....
T Consensus 118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY-YYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHTSCTTCHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999884 6677899999999999999999999 99999998 677788
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccc---------------hh------hhhhhcCCCCCCCCCcc--cccCCCC
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYS---------------QE------SNQSTGGFRSHGTPPSF--TMPFNTN 339 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~------~~~~~~~~~~~~A~~~~--al~~~p~ 339 (433)
++..++.++...|++++|..++..+...... .. ...+...+.+.+++..+ ++..+|
T Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~- 275 (311)
T 3nf1_A 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP- 275 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-
Confidence 9999999999999999999987766531110 00 12344458888888888 777888
Q ss_pred CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 340 ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 340 ~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
..+.++..+| .++..+|++++|+..|++++++.|+
T Consensus 276 ----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 276 ----TVTTTLKNLG-ALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----HHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred ----hHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999 9999999999999999999998775
No 60
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.80 E-value=2.2e-20 Score=157.19 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=131.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 013948 183 CQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY 262 (433)
Q Consensus 183 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 262 (433)
.||.++...|++++|+..+++++..+|+++..++.+|.+|...|+|++|+.+|+++++++|+++.+|+.+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccc-ccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCC
Q 013948 263 NDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW-DQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNAL 341 (433)
Q Consensus 263 ~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~ 341 (433)
++|+. +|+++++++|+++.++..+|.++...|+++++... .++ ++.++|
T Consensus 82 ~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~--------------------------al~l~P--- 131 (150)
T 4ga2_A 82 DKAVE-CYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVER--------------------------AAKLFP--- 131 (150)
T ss_dssp HHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHH--------------------------HHHHST---
T ss_pred HHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH--------------------------HHHhCc---
Confidence 99999 99999999999999999999999999887655443 221 688899
Q ss_pred CccHHHHHHHHhhcccccCCC
Q 013948 342 PTDIASMLMNMASNMPQAQPS 362 (433)
Q Consensus 342 ~~~~~~a~~~la~~~~~~~g~ 362 (433)
+++.++..++ .++..+|+
T Consensus 132 --~~~~~~~l~~-~ll~~~G~ 149 (150)
T 4ga2_A 132 --GSPAVYKLKE-QLLDCEGE 149 (150)
T ss_dssp --TCHHHHHHHH-HHHHTCCC
T ss_pred --CCHHHHHHHH-HHHHHhCc
Confidence 9999999999 88888775
No 61
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=2.3e-19 Score=164.90 Aligned_cols=188 Identities=16% Similarity=0.086 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 251 (433)
+..++.+|..++..|+|++|+..|++++..+|++ +.+++.+|.++..+|++++|+..|+++++++|+ .+.+++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 8899999999999999999999999999999999 899999999999999999999999999999885 4789999
Q ss_pred HHHHHHH--------cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCC
Q 013948 252 LGLAYYA--------QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGF 323 (433)
Q Consensus 252 lg~~~~~--------~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 323 (433)
+|.++.. .|++++|+. .|+++++.+|+++.+...+..+....+....+ ....+..|...|
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~-----------~~~la~~~~~~g 162 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIE-AFQLFIDRYPNHELVDDATQKIRELRAKLARK-----------QYEAARLYERRE 162 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHH-HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccchhHHHHHH-HHHHHHHHCcCchhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHcc
Confidence 9999999 999999999 99999999999877764333222222222111 011123344444
Q ss_pred CCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccC----------CChhhHHHHHhhhcCCCCCc
Q 013948 324 RSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQ----------PSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 324 ~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~----------g~~~~A~~~~~~al~l~P~~ 380 (433)
++++|+..| ++...|+ ....+.+++.+| .++..+ |++++|+..|+++++..|++
T Consensus 163 ~~~~A~~~~~~~l~~~p~--~~~~~~a~~~l~-~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAYPD--TPWADDALVGAM-RAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp CHHHHHHHHHHHHHHCTT--STTHHHHHHHHH-HHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHCCC--CchHHHHHHHHH-HHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 444555555 6667770 013788999999 888876 89999999999999999997
No 62
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=3.5e-20 Score=173.68 Aligned_cols=238 Identities=9% Similarity=-0.046 Sum_probs=191.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++.+|+..+++.....|.+ ..++...++.++...|+++.|+..++. .+|.+..++..++..+...+
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~---------~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPER---------DVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHH---------HHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHhcccCCchh---------hHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCC
Confidence 589999999888877766654 245777888999999999999988765 25666778888888999999
Q ss_pred cHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSIDI--DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
++++|+..+++++.. +|+++.+++.+|.++...|++++|+. ++++ |.++.++..++.++..+|+.++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~-~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALR-TLHQ-----GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHH-HHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHH-HHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998876 59999999999999999999999999 8887 889999999999999999999998887
Q ss_pred cccCC-Cccchh-------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 305 QTTSS-SHYSQE-------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 305 ~~~~~-~~~~~~-------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
+.+.. .|.... ..++...|++++|+..| ++..+| +++.+++++| .++..+|++++|+..|++++
T Consensus 154 ~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-----~~~~~~~~la-~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 154 KKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-----PTLLLLNGQA-ACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-----CCHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-----CcHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 77652 222211 23445668999999999 888999 9999999999 99999999999999999999
Q ss_pred CCCCCc-ccccccccccc--cCCcHHHHHHHHHHHhh
Q 013948 375 SDEPGI-RIGGNINLNFG--ENMPEDITGALRSMMEM 408 (433)
Q Consensus 375 ~l~P~~-~~~~~~~~~l~--~~~~~~~~~a~~~~~~~ 408 (433)
+++|++ .++.+++..+. +...+.....++.+.+.
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 999999 66666664442 33333344455555544
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=2.3e-19 Score=165.14 Aligned_cols=223 Identities=16% Similarity=0.203 Sum_probs=177.4
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC--------GNNAVYYSN 217 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 217 (433)
..|++++|+.+|+++++...... ....+....++..+|.++...|++++|+..|++++.+. |....++.+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 36899999999999999765431 11235668899999999999999999999999999884 556789999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--------CCCCH
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDI--------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--------DPNNE 281 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--------~p~~~ 281 (433)
+|.++...|++++|+.+|++++.+ +|....++..+|.++...|++++|+. ++++++++ .|...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY-YYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999999998 57778999999999999999999999 99999998 77778
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccch---------------hhhhhhcC------CCCCCCCCcc--cccCCC
Q 013948 282 AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQ---------------ESNQSTGG------FRSHGTPPSF--TMPFNT 338 (433)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~------~~~~~A~~~~--al~~~p 338 (433)
.++..+|.++...|++++|...+..+....... ....+... ..+..+...+ .....|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 899999999999999999999877655321100 01122222 3344444444 334556
Q ss_pred CCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 339 NALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 339 ~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
..+.++..+| .++..+|++++|+..|+++++..
T Consensus 250 -----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 -----TVNTTLRSLG-ALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -----HHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhh
Confidence 8999999999 99999999999999999998753
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=5.2e-19 Score=163.45 Aligned_cols=207 Identities=14% Similarity=0.103 Sum_probs=181.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----SQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.|++++|+.+|+++++ |.+ ..+++.+|.++.. .+++++|+..|+++++.+ ++.+++++|.++
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~----------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 84 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD--LKE----------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLY 84 (273)
T ss_dssp TTCHHHHHHHHHHHHH--TTC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CCC----------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence 5899999999999998 444 6789999999999 999999999999999885 899999999999
Q ss_pred HH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 013948 223 TQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK- 293 (433)
Q Consensus 223 ~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~- 293 (433)
.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+. +|+++++.+ ++.++..++.++..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~-~~~~a~~~~--~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVE-YFTKACDLN--DGDGCTILGSLYDAG 159 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH-HHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHH-HHHHHHhcC--cHHHHHHHHHHHHcC
Confidence 99 999999999999999984 89999999999999 999999999 999999976 68899999999998
Q ss_pred ---HHHHHHhcccccccCCCccc----hhhhhhhc----CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc-
Q 013948 294 ---LREERQRTGWDQTTSSSHYS----QESNQSTG----GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA- 359 (433)
Q Consensus 294 ---~~~~~~a~~~~~~~~~~~~~----~~~~~~~~----~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~- 359 (433)
.+++++|..+++.+...... ..+..|.. .+++++|+..| ++..+| +.+++.+| .++..
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~l~-~~~~~g 231 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-------GGGCFNLG-AMQYNG 231 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHH-HHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-------HHHHHHHH-HHHHcC
Confidence 88999999988876532211 12566777 78999999888 666655 46788888 88888
Q ss_pred ---CCChhhHHHHHhhhcCCCCCc
Q 013948 360 ---QPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 360 ---~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+++++|+.+|++++++.|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999988886
No 65
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.79 E-value=2.6e-18 Score=157.81 Aligned_cols=150 Identities=19% Similarity=0.170 Sum_probs=134.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhcCCCHHHH---
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ--------SQQYSDAIELYSFAIALCGNNAVYY--- 215 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~--- 215 (433)
.|++++|+..|++++..+|.+ +....+++.+|.+++. .|++++|+..|++++..+|++..++
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~-------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 137 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQID-------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT 137 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred hCcHHHHHHHHHHHHHHCCCC-------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence 589999999999999998865 4457899999999999 9999999999999999999986655
Q ss_pred --------------HHHHHHHHHhhcHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHc----------CCHHHHHHH
Q 013948 216 --------------SNRAAAYTQIHQYAEAVRDCLKSIDIDPN---YSKAYSRLGLAYYAQ----------GNYNDAIEK 268 (433)
Q Consensus 216 --------------~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~----------g~~~~A~~~ 268 (433)
+.+|.+|...|++++|+..|+++++..|+ .+.+++.+|.++..+ |++++|+.
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~- 216 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE- 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH-
Confidence 88999999999999999999999999998 578999999999987 99999999
Q ss_pred HHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhcccc
Q 013948 269 GFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 269 ~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
.|+++++..|+++ .+...++.++..+++++.+....
T Consensus 217 ~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 217 LYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 9999999999985 56677888888888887765543
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.1e-18 Score=164.80 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hcCCCHHHH
Q 013948 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ-------SQQY-------SDAIELYSFAIA-LCGNNAVYY 215 (433)
Q Consensus 151 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~ 215 (433)
++|+..|++++..+|.+ +.+|+.+|..+.. .|++ ++|+..|++|+. ++|++..+|
T Consensus 33 ~~a~~~~~~al~~~p~~----------~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHH----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHH
Confidence 78999999999999998 8999999998864 5885 999999999999 799999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK-AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK- 293 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~- 293 (433)
..+|.++...|++++|...|+++++++|.++. +|..+|.++...|++++|+. .|+++++.+|.+..++...+.+...
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM-IFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH-HHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 99999999999999999999 9999999999988887765555332
Q ss_pred HHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 294 LREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.|+.++|...++. ++..+| +++.+|..++ .++..+|++++|+..|+++
T Consensus 182 ~~~~~~A~~~~~~--------------------------al~~~p-----~~~~~~~~~~-~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 182 SKDKSVAFKIFEL--------------------------GLKKYG-----DIPEYVLAYI-DYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp SCCHHHHHHHHHH--------------------------HHHHHT-----TCHHHHHHHH-HHHHTTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--------------------------HHHhCC-----CcHHHHHHHH-HHHHHCCCHHHHHHHHHHH
Confidence 4566666555442 677889 8999999999 9999999999999999999
Q ss_pred cCC---CCCc--ccccccccccc-cCCcHHHHHHHHHHHhhcCC
Q 013948 374 GSD---EPGI--RIGGNINLNFG-ENMPEDITGALRSMMEMFSG 411 (433)
Q Consensus 374 l~l---~P~~--~~~~~~~~~l~-~~~~~~~~~a~~~~~~~~~~ 411 (433)
+.. +|+. ..+...+.... ..+.+.....+.+..+.+..
T Consensus 230 l~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 995 6653 23322221111 34556666677777766643
No 67
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=2e-19 Score=188.06 Aligned_cols=194 Identities=13% Similarity=0.037 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAI--------ALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAY 249 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 249 (433)
+.+++..| ...|++++|++.|++++ ..+|++..+++.+|.++..+|++++|+..|+++++++|+++.+|
T Consensus 394 ~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 470 (681)
T 2pzi_A 394 VAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLV 470 (681)
T ss_dssp TTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHH
Confidence 45556555 78899999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCC
Q 013948 250 SRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTP 329 (433)
Q Consensus 250 ~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 329 (433)
+.+|.++..+|++++|+. .|+++++++|+++.++.++|.++..+|++++ ...+.+
T Consensus 471 ~~lg~~~~~~g~~~~A~~-~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~----------------------- 525 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATK-HFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQT----------------------- 525 (681)
T ss_dssp HHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHH-----------------------
T ss_pred HHHHHHHHHcCCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHH-----------------------
Confidence 999999999999999999 9999999999999999999999888877665 444331
Q ss_pred CcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccc--c----CCcHHHHHHH
Q 013948 330 PSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFG--E----NMPEDITGAL 402 (433)
Q Consensus 330 ~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~--~----~~~~~~~~a~ 402 (433)
++.++| +++.+++++| .++..+|++++|+.+|+++++++|++ .++.++...+. . .+.+++.++.
T Consensus 526 ---al~~~P-----~~~~a~~~lg-~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 526 ---VWSTND-----GVISAAFGLA-RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp ---HHHHCT-----TCHHHHHHHH-HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred ---HHHhCC-----chHHHHHHHH-HHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 788999 9999999999 99999999999999999999999999 55555544431 1 2246666666
Q ss_pred HHHHhh
Q 013948 403 RSMMEM 408 (433)
Q Consensus 403 ~~~~~~ 408 (433)
+.+.+.
T Consensus 597 ~~l~~~ 602 (681)
T 2pzi_A 597 RRVEAL 602 (681)
T ss_dssp HHHHTS
T ss_pred HHHhhC
Confidence 666543
No 68
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.79 E-value=5.2e-19 Score=148.68 Aligned_cols=121 Identities=13% Similarity=0.059 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHH
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYA 229 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 229 (433)
+-.+-..+++++.++|.+ ..+++.+|.+++..|++++|+..|++++.++|+++.+|+++|.++..+|+++
T Consensus 18 ~~~~~~~l~~al~l~p~~----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 87 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDM----------MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQ 87 (151)
T ss_dssp HHHTSCCTGGGCCSCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCCHHHHhCCCHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHH
Confidence 333444566677776766 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH
Q 013948 230 EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 230 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~ 281 (433)
+|+.+|+++++++|+++.+|+++|.++..+|++++|+. +|++++++.|+.+
T Consensus 88 ~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~-~~~~al~l~~~~~ 138 (151)
T 3gyz_A 88 QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKE-CFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999 9999999999865
No 69
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=4.2e-18 Score=151.21 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=130.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhcCC
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKC----------------QGNRVMQSQQYSDAIELYSFAIALCGN 210 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----------------lg~~~~~~~~~~~A~~~~~~al~~~p~ 210 (433)
.|++++|+..|++++..+|.+ +.+++. +|.++...|++++|+..|+++++++|+
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 86 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALNIDR----------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN 86 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCHHH----------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhCCCC----------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 499999999999999999987 778888 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN--YNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
++.+++++|.++...|++++|+.+|+++++++|+++.+++.+|.+++..|+ ...+.. .+++++...| ...+++.+|
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET-DYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHC---CCCH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHhCCCc-hhHHHHHHH
Confidence 999999999999999999999999999999999999999999999988765 455677 7877764333 234678889
Q ss_pred HHHHHHHHHHHhcccccc
Q 013948 289 MAEQKLREERQRTGWDQT 306 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~ 306 (433)
.++..+|++++|+.++++
T Consensus 165 ~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHH
Confidence 999999999999888774
No 70
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.79 E-value=4.1e-19 Score=169.88 Aligned_cols=145 Identities=25% Similarity=0.361 Sum_probs=137.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN--------------- 211 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------- 211 (433)
++++++|+..+++++...|.. +.+++.+|.+++..|+|++|+..|++++.++|++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~----------a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~ 195 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQ----------STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 195 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHH----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHH----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH
Confidence 467777888888888887776 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
..+|+++|.++..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+. +|+++++++|++..++..++.++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA-DFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHCCCCHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 013948 292 QKLREERQRTG 302 (433)
Q Consensus 292 ~~~~~~~~a~~ 302 (433)
..+|+++++..
T Consensus 275 ~~~~~~~~a~~ 285 (336)
T 1p5q_A 275 QRIRRQLAREK 285 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988744
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=5.5e-19 Score=171.68 Aligned_cols=197 Identities=14% Similarity=0.077 Sum_probs=163.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+.++++++++.+.... ..+..+.++..+|.++...|++++|+.+|.+++.+.+.. ..+++++|.
T Consensus 156 ~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 232 (383)
T 3ulq_A 156 MKQTYFSMDYARQAYEIYKEHEA---YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL 232 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCST---THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 58999999999999999887631 135568899999999999999999999999999886543 358999999
Q ss_pred HHHHhhcHHHHHHHHHHHHh-----cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-----CCCHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSID-----ID-PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD-----PNNEAVKENIRM 289 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~-----p~~~~~~~~l~~ 289 (433)
+|..+|++++|+.+++++++ .+ |..+.++..+|.++..+|++++|+. ++++++++. |.....+..++.
T Consensus 233 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 233 CKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE-YHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999 56 8889999999999999999999999 999999884 333334556777
Q ss_pred HHHHHHH---HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhH
Q 013948 290 AEQKLRE---ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ 366 (433)
Q Consensus 290 ~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A 366 (433)
++...|+ ..+|....+ .....| ....++..+| .++..+|++++|
T Consensus 312 ~~~~~~~~~~~~~al~~~~---------------------------~~~~~~-----~~~~~~~~la-~~y~~~g~~~~A 358 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLE---------------------------SKMLYA-----DLEDFAIDVA-KYYHERKNFQKA 358 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHH---------------------------HTTCHH-----HHHHHHHHHH-HHHHHTTCHHHH
T ss_pred HHhCCCcHHHHHHHHHHHH---------------------------HCcCHH-----HHHHHHHHHH-HHHHHCCCHHHH
Confidence 7766665 454544444 233455 7888999999 999999999999
Q ss_pred HHHHhhhcCCCCCc
Q 013948 367 GEDSNVSGSDEPGI 380 (433)
Q Consensus 367 ~~~~~~al~l~P~~ 380 (433)
..+|++++++....
T Consensus 359 ~~~~~~al~~~~~i 372 (383)
T 3ulq_A 359 SAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876553
No 72
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.77 E-value=1.5e-18 Score=145.52 Aligned_cols=132 Identities=15% Similarity=0.085 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHH
Q 013948 154 SRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVR 233 (433)
Q Consensus 154 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 233 (433)
...|++++.++|.+ ..+++.+|.+++..|++++|+..|++++..+|+++.+|+++|.++..+|++++|+.
T Consensus 7 ~~~~~~al~~~p~~----------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 76 (148)
T 2vgx_A 7 GGTIAMLNEISSDT----------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH 76 (148)
T ss_dssp CCSHHHHTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHcCCHhh----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 34678888887776 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 234 DCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 234 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
+|++++.++|+++.+++.+|.++..+|++++|+. +|+++++++|+++........+...+..
T Consensus 77 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~l~~ 138 (148)
T 2vgx_A 77 SYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES-GLFLAQELIANXPEFXELSTRVSSMLEA 138 (148)
T ss_dssp HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999999999988766555555554443
No 73
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=3.4e-18 Score=153.67 Aligned_cols=188 Identities=11% Similarity=0.014 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH---HHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK---AYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~ 251 (433)
+..++.+|..++..|+|++|+..|++++...|++ ..+++.+|.++...|++++|+..|+++++.+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 6789999999999999999999999999999987 478999999999999999999999999999999864 8999
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Q 013948 252 LGLAYYA------------------QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYS 313 (433)
Q Consensus 252 lg~~~~~------------------~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 313 (433)
+|.++.. .|++++|+. .|+++++..|+++.++..+..+....+...... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~-----------~ 151 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS-DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE-----------Y 151 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHH-HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH-----------H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH-HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH-----------H
Confidence 9999987 579999999 999999999998766543333222222211110 1
Q ss_pred hhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 314 QESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 314 ~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
..+.+|...|++++|+..| ++...|+ ....+.+++.+| .++..+|++++|+..++++....|+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~l~-~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPD--TQATRDALPLME-NAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT--SHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcC--CCccHHHHHHHH-HHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 1245666677777777777 7888881 113347899999 99999999999999999999999986
No 74
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.75 E-value=8.5e-18 Score=139.67 Aligned_cols=133 Identities=17% Similarity=0.129 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHH
Q 013948 155 RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRD 234 (433)
Q Consensus 155 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 234 (433)
..|++++..+|.+ ...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+.+
T Consensus 5 ~~l~~al~~~p~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 74 (142)
T 2xcb_A 5 GTLAMLRGLSEDT----------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQS 74 (142)
T ss_dssp ----CCTTCCHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHcCCHHH----------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3566667776665 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 235 CLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 235 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
|++++.++|+++.+++.+|.++..+|++++|+. +|+++++++|+++........+...++...
T Consensus 75 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 75 YSYGALMDINEPRFPFHAAECHLQLGDLDGAES-GFYSARALAAAQPAHEALAARAGAMLEAVT 137 (142)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999887777777776666544
No 75
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=4.1e-17 Score=146.59 Aligned_cols=154 Identities=12% Similarity=0.005 Sum_probs=139.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH---HHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV---YYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~ 223 (433)
.|++++|+..|++++...|.+ +....+++.+|.+++..|++++|+..|+++++.+|++.. +++.+|.++.
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~-------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFG-------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTS-------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 499999999999999998875 334679999999999999999999999999999999864 8999999998
Q ss_pred H------------------hhcHHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHH
Q 013948 224 Q------------------IHQYAEAVRDCLKSIDIDPNYSKAY-----------------SRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 224 ~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~ 268 (433)
. .|++++|+..|+++++.+|+++.++ +.+|.++...|++++|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~- 168 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVN- 168 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH-
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH-
Confidence 7 5799999999999999999987654 678999999999999999
Q ss_pred HHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 269 GFKKALQLDPNNE---AVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 269 ~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
.|+++++..|+++ .++..++.++..+|++++|...++.+.
T Consensus 169 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 169 RVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 9999999999986 679999999999999999998877544
No 76
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.74 E-value=2.7e-19 Score=174.92 Aligned_cols=226 Identities=15% Similarity=0.126 Sum_probs=191.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------CGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~ 220 (433)
.|++++|+.+|+++++..|.+ ......++..+|.++...|++++|+..|++++.+ .|....++..+|.
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTED------LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSC------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcccC------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 599999999999999998775 2334578999999999999999999999999998 5677899999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhhC
Q 013948 221 AYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGN-----------------YNDAIEKGFKKALQLD 277 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~-----------------~~~A~~~~~~~al~~~ 277 (433)
++...|++++|+.+|++++.+ .|....++..+|.++...|+ +++|+. ++++++++.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~-~~~~al~~~ 213 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE-FYQENLKLM 213 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999 56678899999999999999 999999 999998864
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHHHhcccccccCCCcc------------chhhhhhhcCCCCCCCCCcc--cccCC
Q 013948 278 ------PNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHY------------SQESNQSTGGFRSHGTPPSF--TMPFN 337 (433)
Q Consensus 278 ------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~--al~~~ 337 (433)
+....++..+|.++...|++++|..++..+..... ...+..|...|++++|+..| ++...
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 33456899999999999999999998776652111 11256788889999999999 77666
Q ss_pred CC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 338 TN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 338 p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
|. ..+.....++..+| .++..+|++++|+..+++++++.+..
T Consensus 294 ~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLG-NTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 51 11123478999999 99999999999999999999886554
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=6.3e-18 Score=158.28 Aligned_cols=207 Identities=10% Similarity=0.043 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHH
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN------NAVYYSNRAAAY 222 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~ 222 (433)
++++|+..|+++ |.++...|++++|+.+|.+++.+.+. .+.++.++|.+|
T Consensus 32 ~~~~A~~~~~~a------------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~ 87 (292)
T 1qqe_A 32 KFEEAADLCVQA------------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF 87 (292)
T ss_dssp HHHHHHHHHHHH------------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 577777777665 45677889999999999999998542 267899999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhCCCC------HHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQ-GNYNDAIEKGFKKALQLDPNN------EAVKENIRM 289 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~~al~~~p~~------~~~~~~l~~ 289 (433)
..+|++++|+.+|++++.+.|.. ..++.++|.+|... |++++|+. +|++++++.|.+ ..++.++|.
T Consensus 88 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~-~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID-CYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 99999999999999999998753 56899999999996 99999999 999999998754 467889999
Q ss_pred HHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCC--ccHHHHHHHHhhcccccCCChhhHH
Q 013948 290 AEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALP--TDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 290 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~--~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
++..+|++++|...+..+ +...|.... .....++.++| .++..+|++++|+
T Consensus 167 ~~~~~g~~~~A~~~~~~a--------------------------l~~~~~~~~~~~~~~~~~~~lg-~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKL--------------------------IKSSMGNRLSQWSLKDYFLKKG-LCQLAATDAVAAA 219 (292)
T ss_dssp HHHHTTCHHHHHHHHHHH--------------------------HHTTSSCTTTGGGHHHHHHHHH-HHHHHTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH--------------------------HHHHhcCCcccHHHHHHHHHHH-HHHHHcCCHHHHH
Confidence 999999999998887643 334441111 13345789999 9999999999999
Q ss_pred HHHhhhcCCCCCc-ccc-ccccccc----ccCCcHHHHHHHHHHHh
Q 013948 368 EDSNVSGSDEPGI-RIG-GNINLNF----GENMPEDITGALRSMME 407 (433)
Q Consensus 368 ~~~~~al~l~P~~-~~~-~~~~~~l----~~~~~~~~~~a~~~~~~ 407 (433)
.+|+++++++|++ ... ...+..+ ...+.+++.+++..+.+
T Consensus 220 ~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 220 RTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 9999999999998 221 1111112 13455666666666643
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=4.3e-17 Score=158.15 Aligned_cols=193 Identities=10% Similarity=0.019 Sum_probs=158.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC------CHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN------NAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~ 220 (433)
.|++++|+.+++++++..+.... ..+..+.++..+|.++...|++++|+..|.+++.+.+. ...+++++|.
T Consensus 154 ~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 154 MKQTHVSMYHILQALDIYQNHPL---YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 58999999999999999887521 12356889999999999999999999999999987432 2568999999
Q ss_pred HHHHhhcHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-----CHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSID-----IDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-----NEAVKENIRMA 290 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-----~~~~~~~l~~~ 290 (433)
++..+|++++|+.++++++. .+|..+.+++.+|.++..+|++++|+. ++++++++.+. .......++.+
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ-FIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999 788889999999999999999999999 99999998543 33444455555
Q ss_pred HHHHHH---HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHH
Q 013948 291 EQKLRE---ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 291 ~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
+...++ ..++..+.. .....| ....++..+| .++..+|++++|.
T Consensus 310 y~~~~~~~~~~~al~~~~---------------------------~~~~~~-----~~~~~~~~la-~~y~~~g~~~~A~ 356 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFE---------------------------KKNLHA-----YIEACARSAA-AVFESSCHFEQAA 356 (378)
T ss_dssp HSSSCCHHHHHHHHHHHH---------------------------HTTCHH-----HHHHHHHHHH-HHHHHTTCHHHHH
T ss_pred HhCCCcHHHHHHHHHHHH---------------------------hCCChh-----HHHHHHHHHH-HHHHHCCCHHHHH
Confidence 544443 444444433 233445 7788899999 9999999999999
Q ss_pred HHHhhhcCC
Q 013948 368 EDSNVSGSD 376 (433)
Q Consensus 368 ~~~~~al~l 376 (433)
.+|+++++.
T Consensus 357 ~~~~~al~~ 365 (378)
T 3q15_A 357 AFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999765
No 79
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.6e-17 Score=130.99 Aligned_cols=116 Identities=30% Similarity=0.445 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.+..++.+|..++..|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q 013948 257 YAQGNYNDAIEKGFKKALQLD------PNNEAVKENIRMAEQK 293 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~------p~~~~~~~~l~~~~~~ 293 (433)
..+|++++|+. +|+++++++ |++..++..+..+...
T Consensus 83 ~~~~~~~~A~~-~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALE-TLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHH-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHH-HHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999 999999999 9999999999887654
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.74 E-value=3.6e-17 Score=140.44 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=144.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..+++++..+|++..++..+|.++...|
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFD----------VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hcCHHHHHHHHHHHHHhCccC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999988876 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
++++|+..+++++..+|.++.++..+|.++...|++++|+. +++++++..|.++.++..++.++...|++++|..++..
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID-SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH-HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999988775
Q ss_pred cC
Q 013948 307 TS 308 (433)
Q Consensus 307 ~~ 308 (433)
+.
T Consensus 170 ~~ 171 (186)
T 3as5_A 170 AN 171 (186)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 81
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.73 E-value=4e-19 Score=167.32 Aligned_cols=226 Identities=15% Similarity=0.129 Sum_probs=186.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------CGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~ 220 (433)
.|++++|+..|+++++..|.+ ......++..+|.++...|++++|+..+++++.+ .|....++..+|.
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTED------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 599999999999999997765 3344678999999999999999999999999987 4455789999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGN--------------------YNDAIEKGFKKAL 274 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~~al 274 (433)
++...|++++|+..+++++++.|.. ..++..+|.++...|+ +++|+. ++++++
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~-~~~~a~ 170 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD-LYEENL 170 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999986543 4589999999999999 999999 999998
Q ss_pred hh------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCcc------------chhhhhhhcCCCCCCCCCcc--cc
Q 013948 275 QL------DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHY------------SQESNQSTGGFRSHGTPPSF--TM 334 (433)
Q Consensus 275 ~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~--al 334 (433)
.+ .+....++..++.++...|++++|..++..+..... ...+..+...|++++|+..+ ++
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 233456889999999999999999998776542111 11145677779999999999 66
Q ss_pred cCCCC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 335 PFNTN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 335 ~~~p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
...|. ..+.....++..+| .++..+|++++|+..+++++++.|..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLG-NTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 66551 11223478899999 99999999999999999999886654
No 82
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.72 E-value=4e-18 Score=147.04 Aligned_cols=164 Identities=9% Similarity=-0.007 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456888999999999999999999999999999999999999999999999999999999999999 8877777775533
Q ss_pred -HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccC
Q 013948 258 -AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPF 336 (433)
Q Consensus 258 -~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~ 336 (433)
..+...+|+. .++++++++|+++.++..+|.++...|++++|...+.. ++..
T Consensus 85 ~~~~~~~~a~~-~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------~l~~ 137 (176)
T 2r5s_A 85 HQQAAESPELK-RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN--------------------------ILKV 137 (176)
T ss_dssp HHHHTSCHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHTT
T ss_pred HhhcccchHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHH--------------------------HHHh
Confidence 3344556899 99999999999999999999999999999999888663 4566
Q ss_pred CCCCCCccH--HHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 337 NTNALPTDI--ASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 337 ~p~~~~~~~--~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
+| +. +.++..+| .++..+|+.++|+..|++++.
T Consensus 138 ~p-----~~~~~~a~~~l~-~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NL-----GAQDGEVKKTFM-DILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CT-----TTTTTHHHHHHH-HHHHHHCSSCHHHHHHHHHHH
T ss_pred Cc-----ccChHHHHHHHH-HHHHHhCCCCcHHHHHHHHHH
Confidence 77 54 56999999 999999999999999999864
No 83
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.72 E-value=8.6e-19 Score=170.30 Aligned_cols=226 Identities=15% Similarity=0.126 Sum_probs=188.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------CGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~ 220 (433)
.|++++|+.+|++++...|.+ ......++..+|.+++..|++++|+..|++++.+ .|....++..+|.
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTED------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 599999999999999997765 3344678999999999999999999999999987 3445789999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGN--------------------YNDAIEKGFKKAL 274 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~~al 274 (433)
++...|++++|+.++++++.+.|.. ..++..+|.++...|+ +++|+. ++++++
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~-~~~~al 174 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD-FYEENL 174 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH-HHHHHH
Confidence 9999999999999999999987654 5699999999999999 999999 999998
Q ss_pred hh------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCC----cc--------chhhhhhhcCCCCCCCCCcc--cc
Q 013948 275 QL------DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSS----HY--------SQESNQSTGGFRSHGTPPSF--TM 334 (433)
Q Consensus 275 ~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~A~~~~--al 334 (433)
.+ .|....++..+|.++...|++++|..++..+... .. ...+..|...|++++|+..+ ++
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 87 3444668999999999999999999987765521 11 11156678889999999999 77
Q ss_pred cCCCC-CCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 335 PFNTN-ALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 335 ~~~p~-~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
...|. ..+.....++..+| .++..+|++++|+..|++++++.+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLG-NTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCcCchHHHHHHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 66651 11123378999999 99999999999999999999885544
No 84
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.72 E-value=1.1e-16 Score=150.70 Aligned_cols=188 Identities=11% Similarity=-0.018 Sum_probs=159.2
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ--QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..+++++.++.+++..+|++ ..+|..++.++...+ .+++++.++.++++.+|.+..+|..++.++...
T Consensus 88 ~~l~~EL~~~~~~L~~~PKn----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l 157 (331)
T 3dss_A 88 ALVKAELGFLESCLRVNPKS----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 157 (331)
T ss_dssp HHHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 35889999999999999998 999999999999988 499999999999999999999999999999999
Q ss_pred hc-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 226 HQ-YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ--------------GNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 226 ~~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
|. ++++++++.++++.+|.+..+|..++.++... +.++++++ ++.+++..+|++..+|+.+..+
T Consensus 158 ~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle-~~~~ai~~~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-LVQNAFFTDPNDQSAWFYHRWL 236 (331)
T ss_dssp TCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHH-HHHHHHHHSTTCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHH
Confidence 99 69999999999999999999999999999988 56999999 9999999999999999877655
Q ss_pred HHHH-----------HHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcc-
Q 013948 291 EQKL-----------REERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNM- 356 (433)
Q Consensus 291 ~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~- 356 (433)
+... +..+ ++++.+ .++++| ++.=++..++ .+
T Consensus 237 l~~~~~~~~~~~~~~~~l~----------------------------~el~~~~elle~~p-----d~~w~l~~~~-~~~ 282 (331)
T 3dss_A 237 LGAGSGRCELSVEKSTVLQ----------------------------SELESCKELQELEP-----ENKWCLLTII-LLM 282 (331)
T ss_dssp HHSSSCGGGCCHHHHHHHH----------------------------HHHHHHHHHHHHCT-----TCHHHHHHHH-HHH
T ss_pred HHhccCccccchHHHHHHH----------------------------HHHHHHHHHHhhCc-----ccchHHHHHH-HHH
Confidence 5433 2233 333334 678889 7754444444 22
Q ss_pred --cccCCChhhHHHHHhhhcCCCCCc
Q 013948 357 --PQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 357 --~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
....|..++....+.+.+++||--
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HhhcccccHHHHHHHHHHHHHhCcch
Confidence 234688889999999999999974
No 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=3.7e-17 Score=167.40 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=127.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++.+|.+ ..+++.+|.++...|++++|+..|+++++++|++..+++++|.++..+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD----------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp -------------------CC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 378999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHhccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL---REERQRTGW 303 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~ 303 (433)
++++|+..|+++++++|+++.+++.+|.++...|++++|+. +|+++++++|++..++..++.++..+ |++++|...
T Consensus 72 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA-AYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999 999999888
Q ss_pred ccccC
Q 013948 304 DQTTS 308 (433)
Q Consensus 304 ~~~~~ 308 (433)
++++.
T Consensus 151 ~~~al 155 (568)
T 2vsy_A 151 VRAAV 155 (568)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
No 86
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=4.8e-17 Score=150.12 Aligned_cols=188 Identities=15% Similarity=0.122 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
+.+++.+|.++...|++++|+.+|+++++ |+++.+++++|.++.. .+++++|+.+|+++++.+ ++.+++.+|
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 78999999999999999999999999998 7899999999999999 999999999999999985 899999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhcccccccCCCccch----hhhhhhc
Q 013948 254 LAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK----LREERQRTGWDQTTSSSHYSQ----ESNQSTG 321 (433)
Q Consensus 254 ~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ 321 (433)
.++.. .+++++|+. +|+++++. +++.++..+|.++.. .+++++|..+++++....... .+.+|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~-~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQ-YYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHH-HHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHH-HHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 99999 999999999 99999987 489999999999999 999999999988776322211 2456666
Q ss_pred ----CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc----CCChhhHHHHHhhhcCCCCCc
Q 013948 322 ----GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA----QPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 322 ----~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~----~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+++++|+..| ++..++ +.+++.+| .++.. .+++++|+.+|+++++.+|..
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg-~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 219 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKD-------SPGCFNAG-NMYHHGEGATKNFKEALARYSKACELENGG 219 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHH-HHHHHTCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC-------HHHHHHHH-HHHHcCCCCCccHHHHHHHHHHHHhCCCHH
Confidence 79999999999 665544 57889999 99999 999999999999999998754
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.71 E-value=3.9e-17 Score=152.50 Aligned_cols=165 Identities=12% Similarity=0.067 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..+.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999988888888898899
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFN 337 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~ 337 (433)
..++.++|+. .|++++..+|+++.++..+|.++...|++++|...+.. ++..+
T Consensus 197 ~~~~~~~a~~-~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~--------------------------~l~~~ 249 (287)
T 3qou_A 197 XQAADTPEIQ-QLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG--------------------------HLRXD 249 (287)
T ss_dssp HHHTSCHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHHC
T ss_pred hhcccCccHH-HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH--------------------------HHhcc
Confidence 9999999999 99999999999999999999999999999999887663 56678
Q ss_pred CCCCCccH--HHHHHHHhhcccccCCChhhHHHHHhhhcC
Q 013948 338 TNALPTDI--ASMLMNMASNMPQAQPSQSRQGEDSNVSGS 375 (433)
Q Consensus 338 p~~~~~~~--~~a~~~la~~~~~~~g~~~~A~~~~~~al~ 375 (433)
| ++ ..++.+++ .++..+|+.++|...|++++.
T Consensus 250 p-----~~~~~~a~~~l~-~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 250 L-----TAADGQTRXTFQ-EILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp T-----TGGGGHHHHHHH-HHHHHHCTTCHHHHHHHHHHH
T ss_pred c-----ccccchHHHHHH-HHHHHcCCCCcHHHHHHHHHH
Confidence 8 76 88999999 999999999999999999864
No 88
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=2.2e-17 Score=134.39 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=112.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 203 FAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 203 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
++..++|+.+..+.++|.++++.|+|++|+..|+++++++|.++.+|+++|.++..+|++++|+. .|+++++++|+++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD-DCDTCIRLDSKFIK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHH-HHHHHHHhhhhhhH
Confidence 45568999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhccc
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMP 357 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~ 357 (433)
++..+|.++..+|++++|...++. +++++| +++.++..++ .++
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~--------------------------al~l~P-----~~~~a~~~l~-~~l 125 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYED--------------------------ALQVDP-----SNEEAREGVR-NCL 125 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHHCT-----TCHHHHHHHH-HHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH--------------------------HHHHCc-----CCHHHHHHHH-Hhc
Confidence 999999999999999999887663 677899 9999999988 654
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.71 E-value=9.1e-17 Score=164.52 Aligned_cols=163 Identities=10% Similarity=0.042 Sum_probs=135.0
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGF 270 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 270 (433)
.|++++|+..|+++++.+|++..+++++|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+. +|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV-LL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHH
Q 013948 271 KKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLM 350 (433)
Q Consensus 271 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~ 350 (433)
+++++++|++..++..+|.++..+|++++|...+++ ++..+| +++.++.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------al~~~p-----~~~~~~~ 129 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR--------------------------AHQLLP-----EEPYITA 129 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HHHHCT-----TCHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------HHHhCC-----CCHHHHH
Confidence 999999999999999999999999999999887663 567789 9999999
Q ss_pred HHhhcccccC---CChhhHHHHHhhhcCCCCCc-cccccc
Q 013948 351 NMASNMPQAQ---PSQSRQGEDSNVSGSDEPGI-RIGGNI 386 (433)
Q Consensus 351 ~la~~~~~~~---g~~~~A~~~~~~al~l~P~~-~~~~~~ 386 (433)
++| .++..+ |++++|+..|+++++.+|++ ..+..+
T Consensus 130 ~l~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 130 QLL-NWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp HHH-HHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred HHH-HHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 999 999999 99999999999999999998 444333
No 90
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.70 E-value=3.8e-16 Score=132.76 Aligned_cols=124 Identities=34% Similarity=0.558 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
+..+..++.+|.+++..|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+|+.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHH
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA--EQKLREERQ 299 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~ 299 (433)
++..+|++++|+. +|+++++++|++..++...+.. ...+++...
T Consensus 88 ~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 88 ARFDMADYKGAKE-AYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR 133 (164)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHH-HHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 9999999999998866555544 445554443
No 91
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.70 E-value=2.7e-16 Score=133.38 Aligned_cols=124 Identities=22% Similarity=0.311 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------------------CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKS 238 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 238 (433)
.+..+..+|..++..|+|++|+..|.+++.+ +|.+..+|+++|.|+..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4788999999999999999999999999999 7777899999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHhc
Q 013948 239 IDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNE-AVKENIRMAEQKLREERQRT 301 (433)
Q Consensus 239 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~a~ 301 (433)
++++|+++.+|+.+|.++..+|++++|+. +|+++++++|+++ .+...++.+...++...+..
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEE-DLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999999999 77888999988887766554
No 92
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.70 E-value=6.2e-16 Score=146.27 Aligned_cols=206 Identities=11% Similarity=0.016 Sum_probs=162.3
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS-Q-QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.+++++.++.++|..+|++ ..+|..++.++... + ++++++.++.++++.+|.+..+|..++.++...+
T Consensus 104 ~l~eEL~~~~~~L~~nPKn----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKS----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCC----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999998 99999999999887 7 8999999999999999999999999999999999
Q ss_pred cHH--------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 227 QYA--------EAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN-------YNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 227 ~~~--------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.++ +++++++++++.+|.|..+|..++.++...+. ++++++ ++.+++.++|++..+|..+..++
T Consensus 174 ~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe-~~~~aI~~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 174 TLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELI-YILKSIHLIPHNVSAWNYLRGFL 252 (349)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 988 99999999999999999999999999999987 799999 99999999999999999988877
Q ss_pred HHHHHHH----HhcccccccCCCccchhhhhhhcCCCCCCCCCcc---cccCC-CCCCCccHHHHHHHHhhcccccCCCh
Q 013948 292 QKLREER----QRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF---TMPFN-TNALPTDIASMLMNMASNMPQAQPSQ 363 (433)
Q Consensus 292 ~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~---al~~~-p~~~~~~~~~a~~~la~~~~~~~g~~ 363 (433)
...|... .+.-.+......+. . ..+..| .+... +.......+.++.-++ .+|...|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~-d~~~~~~~~ 318 (349)
T 3q7a_A 253 KHFSLPLVPILPAILPYTASKLNPD---------I----ETVEAFGFPMPSDPLPEDTPLPVPLALEYLA-DSFIEQNRV 318 (349)
T ss_dssp HHTTCCSGGGHHHHGGGTC---------------------------CCCCC-CCCSSCCSCCHHHHHHHH-HHHHHTTCH
T ss_pred HhcCCCccccccccccccccccccc---------c----hhHHHHHHHHHhcccccccCCCcHHHHHHHH-HHHHhcCCH
Confidence 6655430 00000000000000 0 011111 11111 0011127778899999 999999999
Q ss_pred hhHHHHHhhhc-CCCCC
Q 013948 364 SRQGEDSNVSG-SDEPG 379 (433)
Q Consensus 364 ~~A~~~~~~al-~l~P~ 379 (433)
++|.+.|+... +.||-
T Consensus 319 ~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 319 DDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHhhhChH
Confidence 99999999976 66775
No 93
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.70 E-value=4e-16 Score=146.08 Aligned_cols=216 Identities=10% Similarity=-0.035 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ--QYSDAIELYSFAIALCGNNAVYYSNRAAAY---- 222 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~---- 222 (433)
..++|+.++.++|.++|.+ ..+|+.++.++...+ ++++++.++.+++..+|++..+|+.++.++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~----------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 48 YSERALHITELGINELASH----------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcHH----------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 4468999999999999998 999999999999999 999999999999999999999999999999
Q ss_pred HHh---hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-
Q 013948 223 TQI---HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN--DAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE- 296 (433)
Q Consensus 223 ~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~- 296 (433)
... +++++++.+++++++.+|.+..+|..++.++...|.++ +++. .+.++++.+|.|..+|...+.+...++.
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~-~~~~~i~~d~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELS-FVDKVIDTDLKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHSSGGG
T ss_pred HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence 777 78999999999999999999999999999999999999 9999 9999999999999999999999887765
Q ss_pred -----HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhH-HHHH
Q 013948 297 -----ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ-GEDS 370 (433)
Q Consensus 297 -----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A-~~~~ 370 (433)
++++..+... ++..+| ++..+|+.++ .++...|+..++ ...+
T Consensus 197 ~~~~~~~eEl~~~~~--------------------------aI~~~p-----~n~SaW~y~~-~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 197 ATDNTIDEELNYVKD--------------------------KIVKCP-----QNPSTWNYLL-GIHERFDRSITQLEEFS 244 (306)
T ss_dssp CCHHHHHHHHHHHHH--------------------------HHHHCS-----SCHHHHHHHH-HHHHHTTCCGGGGHHHH
T ss_pred chhhhHHHHHHHHHH--------------------------HHHhCC-----CCccHHHHHH-HHHHhcCCChHHHHHHH
Confidence 4444443321 688899 9999999999 899999986664 4577
Q ss_pred hhhcCCC---CCc-ccccccccccc-cCCcHHHHHHHHHHHh
Q 013948 371 NVSGSDE---PGI-RIGGNINLNFG-ENMPEDITGALRSMME 407 (433)
Q Consensus 371 ~~al~l~---P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~ 407 (433)
.++++++ |.+ .+...+...+. ..+.++..+++..+.+
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7778776 555 22222222221 2344444445555443
No 94
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.70 E-value=9.7e-17 Score=133.85 Aligned_cols=119 Identities=15% Similarity=0.178 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHhhcHHHHHHHHHHHHhc---
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-------NAV-----YYSNRAAAYTQIHQYAEAVRDCLKSIDI--- 241 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~--- 241 (433)
.+..+..+|..++..|+|++|+..|+++|+++|+ +.. +|+++|.++..+|+|++|+.+|+++|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4788999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ----CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 242 ----DPNYSKAY----SRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 242 ----~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
+|+++.+| +++|.++..+|++++|+. +|+++++++|++......+..+......
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999 9999999999998777777766655443
No 95
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.70 E-value=3.5e-16 Score=134.55 Aligned_cols=132 Identities=23% Similarity=0.309 Sum_probs=120.4
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA-YTQ 224 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~ 224 (433)
..|++++|+..+++++..+|.+ ..+++.+|.++...|++++|+.+|++++.++|+++.+++.+|.+ +..
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQN----------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ 91 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999887 88999999999999999999999999999999999999999999 889
Q ss_pred hhcH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 225 IHQY--AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 225 ~~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
.|++ ++|+..++++++.+|+++.+++.+|.++...|++++|+. +|+++++++|++......+.
T Consensus 92 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE-LWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCCTTSCHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH-HHHHHHhhCCCCccHHHHHH
Confidence 9999 999999999999999999999999999999999999999 99999999999866554443
No 96
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.70 E-value=1.6e-16 Score=139.48 Aligned_cols=145 Identities=26% Similarity=0.329 Sum_probs=128.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH--------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA-------------- 212 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------------- 212 (433)
.|+++++.+.+.......+.. +..+..+|..++..|+|++|+..|.+++.+.|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQS----------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp -----CCCSGGGCCHHHHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 577777777777666554443 88999999999999999999999999999999887
Q ss_pred --HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 213 --VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 213 --~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
.+++++|.++..+|++++|+.++++++.++|+++.+++.+|.++..+|++++|+. +|+++++++|++..++..++.+
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE-NLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHCCCcHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 013948 291 EQKLREERQRTG 302 (433)
Q Consensus 291 ~~~~~~~~~a~~ 302 (433)
+..+++..++..
T Consensus 166 ~~~~~~~~~~~~ 177 (198)
T 2fbn_A 166 VNKLKEARKKDK 177 (198)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHH
Confidence 999999887663
No 97
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.70 E-value=2.3e-17 Score=153.57 Aligned_cols=191 Identities=20% Similarity=0.227 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+..++.+|..++..|++++|+..|++++..+|+++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNE-----AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF 332 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 332 (433)
.+|++++|+. +|+++++++|+++ .++..+.. .....+...... .....+......-....|++++|++.+
T Consensus 84 ~~g~~~~A~~-~~~~al~l~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~i~~~l~~l~~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIA-NLQRAYSLAKEQRLNFGDDIPSALRI--AKKKRWNSIEER--RIHQESELHSYLTRLIAAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHH-HHHHHHHHHHHTTCCCCSHHHHHHHH--HHHHHHHHHHHT--CCCCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HcCCHHHHHH-HHHHHHHhCccchhhHHHHHHHHHHH--HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999998763 23333322 222222221111 111111111111112247888888888
Q ss_pred --cccCCCCCCCccHHHHHHHHhhcccccC-CChhhHHHHHhhhcCCCCC
Q 013948 333 --TMPFNTNALPTDIASMLMNMASNMPQAQ-PSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 333 --al~~~p~~~~~~~~~a~~~la~~~~~~~-g~~~~A~~~~~~al~l~P~ 379 (433)
++..+| ++......++ .++... +++++|.+.|.++.+..+.
T Consensus 159 ~~al~~~p-----~~~~~~~~l~-~~~~~~~~~~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 159 QRNHEGHE-----DDGHIRAQQA-CIEAKHDKYMADMDELFSQVDEKRKK 202 (281)
T ss_dssp SGGGTTTS-----CHHHHTHHHH-HHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred Hhhhcccc-----chhhhhhHHH-HHHHHHHHHHHHHHHHHHhhhccccC
Confidence 889999 8888888877 665555 7788999999888875433
No 98
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.69 E-value=4.9e-16 Score=126.51 Aligned_cols=110 Identities=27% Similarity=0.394 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc-------HHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY-------SKA 248 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 248 (433)
+.+.++..+|..++..|+|++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++ ..+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3478899999999999999999999999999999999999999999999999999999999999998875 368
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENI 287 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l 287 (433)
+.++|.++..+|++++|+. +|++++...|+ ++....+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~-~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQ-WFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHHhhCcC-HHHHHHH
Confidence 9999999999999999999 99999999885 5544443
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2.3e-16 Score=160.75 Aligned_cols=200 Identities=5% Similarity=-0.020 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhcCCCHHHHHHHH
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ----------YSDAIELYSFAIALCGNNAVYYSNRA 219 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la 219 (433)
.++|++.+.+++..+|++ ..+|+.++.++...++ ++++++.+.+++..+|++..+|+.++
T Consensus 45 ~eeal~~~~~~l~~nP~~----------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~ 114 (567)
T 1dce_A 45 DESVLELTSQILGANPDF----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 114 (567)
T ss_dssp SHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchh----------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 467899999999999998 9999999999999988 99999999999999999999999999
Q ss_pred HHHHHhh--cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 220 AAYTQIH--QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG-NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 220 ~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
.++.+.+ ++++++.+++++++++|.+..+|..++.++...| .++++++ ++.++++.+|.+..+|...+.++..++.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~-~~~~~I~~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA-FTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH-HHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH-HHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence 9999999 7799999999999999999999999999999999 9999999 9999999999999999999999887622
Q ss_pred HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhh---------
Q 013948 297 ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSR--------- 365 (433)
Q Consensus 297 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~--------- 365 (433)
...+.... . ...+.++++++.+ ++..+| ++..+|+.++ .++...+++++
T Consensus 194 ~~~~~~~~------~--------~~~~~~~eel~~~~~ai~~~P-----~~~saW~y~~-~ll~~~~~~~~~~~~~~~~~ 253 (567)
T 1dce_A 194 QPDSGPQG------R--------LPENVLLKELELVQNAFFTDP-----NDQSAWFYHR-WLLGRAEPHDVLCCVHVSRE 253 (567)
T ss_dssp CCCSSSCC------S--------SCHHHHHHHHHHHHHHHHHCS-----SCSHHHHHHH-HHHSCCCCCSCEEEEEEETT
T ss_pred cccccccc------c--------ccHHHHHHHHHHHHHHHhhCC-----CCccHHHHHH-HHHhcCCCccceeeeeeccC
Confidence 11000000 0 0001122333334 788999 9999999999 89999999888
Q ss_pred ---HHHHHhhhcCCCCCc
Q 013948 366 ---QGEDSNVSGSDEPGI 380 (433)
Q Consensus 366 ---A~~~~~~al~l~P~~ 380 (433)
|+.+|.+++.++|..
T Consensus 254 ~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 254 EACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp TTEEEEEEEEEECTTBTT
T ss_pred CceEEEEeccceeccccc
Confidence 778899999999984
No 100
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.69 E-value=5.8e-17 Score=161.45 Aligned_cols=146 Identities=24% Similarity=0.371 Sum_probs=134.2
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN--------------- 211 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------- 211 (433)
.+++++|+..+++++...|.. +..+..+|.+++..|+|++|+..|++++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~----------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~ 316 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQ----------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFL 316 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHH----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 467888888888888887776 8999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
..+|+++|.|+.++|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+. +|+++++++|++..++..++.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~-~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG-DFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 013948 292 QKLREERQRTGW 303 (433)
Q Consensus 292 ~~~~~~~~a~~~ 303 (433)
..++++.++...
T Consensus 396 ~~~~~~~~a~~~ 407 (457)
T 1kt0_A 396 KKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877653
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.69 E-value=1.3e-16 Score=137.42 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=134.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-Hh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYT-QI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 225 (433)
.|++++|+..|+++++.+|.+ ..+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..
T Consensus 19 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDELQSR----------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp TTCHHHHHHHHHTSCHHHHTS----------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCc----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 589999999999999999998 89999999999999999999999999999999 8887777775543 33
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--EAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
++..+|+..++++++++|+++.+++.+|.++...|++++|+. .|+++++.+|+. +.++..++.++..+|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE-LLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH-HHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 445568999999999999999999999999999999999999 999999999975 66999999999999999888887
Q ss_pred ccc
Q 013948 304 DQT 306 (433)
Q Consensus 304 ~~~ 306 (433)
+++
T Consensus 167 y~~ 169 (176)
T 2r5s_A 167 YRR 169 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 102
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=4.7e-16 Score=157.81 Aligned_cols=190 Identities=11% Similarity=0.065 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHH-HHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcH
Q 013948 151 DKASRIFHDAIN-EMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA-VYYSNRAAAYTQIHQY 228 (433)
Q Consensus 151 ~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~ 228 (433)
++|+..|++++. ..|.+ ...|..+|..+...|++++|+..|++++.+.|.++ .+|..+|.++...|++
T Consensus 303 ~~A~~~~~~Al~~~~p~~----------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKN----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp HHHHHHHHHHTTTTCSSC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCH
Confidence 389999999997 77877 88999999999999999999999999999999986 6999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 229 AEAVRDCLKSIDIDPNYSKAYSRLGLA-YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 229 ~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
++|...|+++++..|.....+...+.+ +...|++++|.. .|+++++..|+++.+|..++..+...|+.++|...++.+
T Consensus 373 ~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~-~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 373 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK-IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH-HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 999999999999999888888877766 446999999999 999999999999999999999999999999888877643
Q ss_pred CCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 308 SSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
+...| ..|......|.... ......|+.+.+...++++++..|+
T Consensus 452 --------------------------l~~~~-~~~~~~~~lw~~~~-~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 452 --------------------------LTSGS-LPPEKSGEIWARFL-AFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp --------------------------HHSCC-SCGGGCHHHHHHHH-HHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred --------------------------HhccC-CCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHCch
Confidence 33333 11223455777777 7778889999999999999999985
No 103
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.68 E-value=1.8e-15 Score=121.90 Aligned_cols=122 Identities=48% Similarity=0.746 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGL 254 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 254 (433)
+.....++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.++++++..+|+++.+++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
++...|++++|+. +|+++++++|+++.++..++.++..+|++
T Consensus 89 ~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVA-YYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHH-HHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999 99999999999999999999999887753
No 104
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.68 E-value=1.1e-15 Score=143.94 Aligned_cols=191 Identities=7% Similarity=0.036 Sum_probs=165.4
Q ss_pred chH-HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhcCCCHHHHH
Q 013948 148 SQV-DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ----------YSDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 148 g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~ 216 (433)
|++ ++|+.++.++|.++|.+ ..+|+..+.++...+. +++++.++..++..+|.+..+|+
T Consensus 43 ~e~s~eaL~~t~~~L~~nP~~----------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~ 112 (331)
T 3dss_A 43 GELDESVLELTSQILGANPDF----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 112 (331)
T ss_dssp TCCSHHHHHHHHHHHTTCTTC----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCchh----------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344 47999999999999998 8999999999887765 78999999999999999999999
Q ss_pred HHHHHHHHhhc--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 217 NRAAAYTQIHQ--YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN-YNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 217 ~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
.++.++...++ +++++.++.++++.+|.|..+|...+.+....|. +++++. ++.++++.+|.|..+|..++.+...
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~-~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA-FTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999994 9999999999999999999999999999999999 699999 9999999999999999999999887
Q ss_pred H--------------HHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhccccc
Q 013948 294 L--------------REERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQA 359 (433)
Q Consensus 294 ~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~ 359 (433)
+ +.++++..+... ++..+| ++..+|+.+...+...
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~--------------------------ai~~~P-----~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQN--------------------------AFFTDP-----NDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHH--------------------------HHHHST-----TCHHHHHHHHHHHHSS
T ss_pred hhhccccccccccchHHHHHHHHHHHH--------------------------HHHhCC-----CCHHHHHHHHHHHHhc
Confidence 7 333333333221 788999 9999996444144444
Q ss_pred CC----------ChhhHHHHHhhhcCCCCCc
Q 013948 360 QP----------SQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 360 ~g----------~~~~A~~~~~~al~l~P~~ 380 (433)
.| .++++++++.++++++|++
T Consensus 241 ~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 241 SGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 34 4789999999999999998
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.67 E-value=1.4e-16 Score=150.27 Aligned_cols=205 Identities=13% Similarity=0.046 Sum_probs=163.4
Q ss_pred cchHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAH-AYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la 219 (433)
.|++++|.++++++....+..--. ......-...+...|.++...|++++|+.+|.+++.+.+.. ..++.++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 578899999999998877642100 11223334456667888999999999999999999986543 56899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVKENI 287 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~~~l 287 (433)
.+|..+|++++|+.+|++++.+.+. ...++.++|.+|.. |++++|+. +|++++++.|.. ..++.++
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~-~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH-LYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH-HHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999999999999999998543 25788999999999 99999999 999999987653 5688899
Q ss_pred HHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHH
Q 013948 288 RMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQG 367 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~ 367 (433)
|.++..+|++++|..++..+..... .....+ ....++..+| .++..+|++++|+
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~--------------------~~~~~~-----~~~~~~~~~g-~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYK--------------------EMENYP-----TCYKKCIAQV-LVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH--------------------HTTCHH-----HHHHHHHHHH-HHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH--------------------HcCChh-----HHHHHHHHHH-HHHHHcCCHHHHH
Confidence 9999999999999988775432110 011112 4456889999 8999999999999
Q ss_pred HHHhhhcCCCCCc
Q 013948 368 EDSNVSGSDEPGI 380 (433)
Q Consensus 368 ~~~~~al~l~P~~ 380 (433)
.+|++++ ++|++
T Consensus 216 ~~~~~al-~~p~~ 227 (307)
T 2ifu_A 216 KCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHT-TSTTS
T ss_pred HHHHHHh-CCCCC
Confidence 9999999 99987
No 106
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.67 E-value=4.6e-15 Score=125.31 Aligned_cols=131 Identities=28% Similarity=0.477 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
..+..++.+|.+++..|++++|+..|.+++..+|++..+++++|.++...|++++|+..++++++++|.++.+++.+|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhccccccc
Q 013948 256 YYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA--EQKLREERQRTGWDQTT 307 (433)
Q Consensus 256 ~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~ 307 (433)
+...|++++|+. +|+++++++|.+..++..++.+ +...|++++|...+...
T Consensus 91 ~~~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALR-DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999 9999999999999998666555 77889999998886643
No 107
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.67 E-value=9e-16 Score=124.50 Aligned_cols=122 Identities=30% Similarity=0.501 Sum_probs=116.8
Q ss_pred chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHH
Q 013948 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRL 252 (433)
Q Consensus 173 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 252 (433)
..+....+++.+|.+++..|++++|+..|++++..+|++..+++.+|.++...|++++|+.+++++++.+|+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
|.++...|++++|+. +|+++++++|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMD-VYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHH-HHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999 999999999999999999999988765
No 108
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.67 E-value=2.2e-15 Score=123.37 Aligned_cols=121 Identities=30% Similarity=0.476 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+..++.+|.+++..|++++|+..|.+++..+|+++.+++++|.++..+|++++|+..++++++++|+++.+++.+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPN-----NEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~ 299 (433)
..|++++|+. +|+++++++|+ +..++..+..+........+
T Consensus 89 ~~~~~~~A~~-~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 89 EMESYDEAIA-NLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HTTCHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHH-HHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999998 78888888888776665544
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.66 E-value=6.7e-16 Score=144.10 Aligned_cols=149 Identities=11% Similarity=0.045 Sum_probs=141.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++..+|+....+...+..+...+
T Consensus 130 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLSNQN----------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp TTCHHHHHHHHHHHHHHTTSC----------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcc----------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence 599999999999999999998 8999999999999999999999999999999988888888888899999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhcccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN--EAVKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
+.++|+..+++++..+|+++.+++.+|.++...|++++|+. .|+++++.+|++ ..++..++.++..+|+.+++...+
T Consensus 200 ~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~-~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 200 ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE-LLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH-HHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999 999999999998 899999999999999988887776
Q ss_pred cc
Q 013948 305 QT 306 (433)
Q Consensus 305 ~~ 306 (433)
++
T Consensus 279 r~ 280 (287)
T 3qou_A 279 RR 280 (287)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 110
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.66 E-value=2.2e-16 Score=145.08 Aligned_cols=127 Identities=22% Similarity=0.260 Sum_probs=112.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------CGNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 218 (433)
.|++++|+.++++++....... ....+....++..+|.++...|++++|+..|.+++.+ +|....++.++
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 133 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAIREKTL--GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNL 133 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 5899999999999999863210 0123455889999999999999999999999999998 46668899999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDI--------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
|.++...|++++|+.++++++.+ .|....++..+|.++...|++++|+. ++++++++
T Consensus 134 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~l~~ 198 (283)
T 3edt_B 134 ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-LYKEILTR 198 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHH
Confidence 99999999999999999999999 77788999999999999999999999 99999986
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.66 E-value=2.7e-17 Score=138.19 Aligned_cols=111 Identities=11% Similarity=-0.061 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 197 AIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 197 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|+|++|+. +|++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~-~~~~al~l 99 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD-LYAVAFAL 99 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH-HHHHHHhh
Confidence 33567788999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 277 DPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 277 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
+|+++.+++++|.++..+|++++|...++++.
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999877543
No 112
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.66 E-value=4.4e-16 Score=151.11 Aligned_cols=230 Identities=13% Similarity=0.077 Sum_probs=178.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-------AVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la 219 (433)
.|++++|+..|++++.+.+... ..+..+.+++.+|.++...|++++|+.++.+++.+.+.. ..++.++|
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVK----DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 5999999999999999855431 234468999999999999999999999999999985433 56899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----hC-CCCHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQ-----LD-PNNEAVKENI 287 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~-----~~-p~~~~~~~~l 287 (433)
.++..+|++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+. +|+++++ .+ |....++.++
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP-YFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHhhccchhHHHHHHHH
Confidence 99999999999999999999885543 3689999999999999999999 9999999 46 7788999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC---hh
Q 013948 288 RMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS---QS 364 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~---~~ 364 (433)
|.++..+|++++|..++..+..... -..+| .....+..+| .++...|+ ++
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~---------------------~~~~~-----~~~~~~~~l~-~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQ---------------------KAGDV-----IYLSEFEFLK-SLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH---------------------HHTCH-----HHHHHHHHHH-HHHTSSCCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH---------------------HcCCH-----HHHHHHHHHH-HHHhCCCcHHHHH
Confidence 9999999999999998775432111 01145 5555678899 99999999 89
Q ss_pred hHHHHHhhhcCCCCCc-ccccccccccc-cCCcHHHHHHHHHHHhhc
Q 013948 365 RQGEDSNVSGSDEPGI-RIGGNINLNFG-ENMPEDITGALRSMMEMF 409 (433)
Q Consensus 365 ~A~~~~~~al~l~P~~-~~~~~~~~~l~-~~~~~~~~~a~~~~~~~~ 409 (433)
+|+..+++. ...|.. ....+++..+. ..+.+.....++...+..
T Consensus 324 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 324 GFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999887 333333 22222222221 355555555555554443
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.65 E-value=3.3e-15 Score=140.76 Aligned_cols=154 Identities=10% Similarity=0.074 Sum_probs=133.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+..|.+++.+.+..+ .....+.++..+|.++...|++++|+.+|++++.+.+.. ..++.++|.
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNR----SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6899999999999999988753 223457789999999999999999999999999985432 568999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVKENIR 288 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~~~l~ 288 (433)
+|.. |++++|+.+|++++.+.|.. ..++.++|.++..+|+|++|+. +|++++++.|.+ ..++..++
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA-SLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 9999 99999999999999997653 6789999999999999999999 999999986644 34677888
Q ss_pred HHHHHHHHHHHhcccccc
Q 013948 289 MAEQKLREERQRTGWDQT 306 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~ 306 (433)
.++..+|++++|..+++.
T Consensus 203 ~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 888888999988887764
No 114
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.64 E-value=2e-15 Score=121.71 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
..++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
.|++++|+. +|+++++++|++..
T Consensus 98 ~g~~~~A~~-~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALA-SLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHH-HHHHHHC-------
T ss_pred cCCHHHHHH-HHHHHHHhCcCCCC
Confidence 999999999 99999999998754
No 115
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=1.4e-14 Score=114.45 Aligned_cols=113 Identities=33% Similarity=0.517 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
+..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++.+++.+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
..|++++|+. +++++++++|+++.++..++.+.
T Consensus 84 ~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKR-TYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHH-HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHH-HHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999 99999999999999999988775
No 116
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=2.6e-15 Score=152.36 Aligned_cols=217 Identities=11% Similarity=0.023 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hcCCCHHHH
Q 013948 151 DKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ-------SQQYS-------DAIELYSFAIA-LCGNNAVYY 215 (433)
Q Consensus 151 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~ 215 (433)
..++..|++++..+|.+ +.+|+.+|..+.. .|+++ +|+..|++|+. ++|++..+|
T Consensus 255 ~~a~~~y~~al~~~p~~----------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHH----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred HHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 47888999999999988 8999999999886 79987 99999999997 899999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HH
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS-KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE-QK 293 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~-~~ 293 (433)
+.+|.++...|++++|...|+++++++|.++ .+|..+|.++.+.|++++|.. .|+++++..|.....+...+.+. ..
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM-IFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH-HHHHHHhccCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 699999999999999999999 99999999998877776655543 23
Q ss_pred HHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 294 LREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 294 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.|+.++|...++. ++..+| +++.+|..++ .++...|+.++|...|+++
T Consensus 404 ~~~~~~A~~~~e~--------------------------al~~~p-----~~~~~~~~~~-~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 404 SKDKSVAFKIFEL--------------------------GLKKYG-----DIPEYVLAYI-DYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp TCCHHHHHHHHHH--------------------------HHHHHT-----TCHHHHHHHH-HHHTTTTCHHHHHHHHHHH
T ss_pred cCChhHHHHHHHH--------------------------HHHHCC-----CCHHHHHHHH-HHHHhCCCHhhHHHHHHHH
Confidence 5666666665442 577789 9999999999 9999999999999999999
Q ss_pred cCCCCCcc-----cccccc-cccccCCcHHHHHHHHHHHhhcC
Q 013948 374 GSDEPGIR-----IGGNIN-LNFGENMPEDITGALRSMMEMFS 410 (433)
Q Consensus 374 l~l~P~~~-----~~~~~~-~~l~~~~~~~~~~a~~~~~~~~~ 410 (433)
+...|.+. .+...+ +.....+.+.......+..+.++
T Consensus 452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99876541 221111 11113456666666666666654
No 117
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=7e-16 Score=154.96 Aligned_cols=206 Identities=10% Similarity=0.059 Sum_probs=173.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----SQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.+++++|+.+|+++++.. + +.+++.+|.++.. .+++++|+..|+++++. .++.+++.+|.++
T Consensus 200 ~~~~~~A~~~~~~a~~~~--~----------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y 265 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG--D----------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYIL 265 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--C----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC--C----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 579999999999998752 2 6789999999987 88999999999999875 5788999999999
Q ss_pred HH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 223 TQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ-----GNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 223 ~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
.. .+++++|+.+|+++++. .++.+++.+|.++... +++++|+. +|+++++. .++.++..+|.++..
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~-~~~~a~~~--~~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAIS-WYTKSAEQ--GDATAQANLGAIYFR 340 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHH-HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHH-HHHHHHhc--CCHHHHHHHHHHHHh
Confidence 98 89999999999999875 6788999999999998 99999999 99999986 567899999999987
Q ss_pred H---HHHHHhcccccccCCCccch----hhhhhhc----CCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc-
Q 013948 294 L---REERQRTGWDQTTSSSHYSQ----ESNQSTG----GFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA- 359 (433)
Q Consensus 294 ~---~~~~~a~~~~~~~~~~~~~~----~~~~~~~----~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~- 359 (433)
. .+.++|..+++++....... .+.+|.. .+++++|+..| +++ . .++.+++++| .++..
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~--~-----~~~~a~~~Lg-~~y~~g 412 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE--Q-----GLSAAQVQLG-EIYYYG 412 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--T-----TCHHHHHHHH-HHHHHT
T ss_pred CCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh--C-----CCHHHHHHHH-HHHHcC
Confidence 4 48889999888776332111 1456666 58899999988 554 3 3467999999 88887
Q ss_pred ---CCChhhHHHHHhhhcCCCCC
Q 013948 360 ---QPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 360 ---~g~~~~A~~~~~~al~l~P~ 379 (433)
.+++++|+.+|+++++.+|+
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999999954
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.64 E-value=2.3e-15 Score=133.16 Aligned_cols=149 Identities=21% Similarity=0.264 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...++.+|.+++..|++++|+..|++++ +| ++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 5678899999999999999999999996 34 78999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCC
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFN 337 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~ 337 (433)
..|++++|+. +|++++++.|.+.... +.. ..+...
T Consensus 83 ~~~~~~~A~~-~~~~al~~~~~~~~~~------------------~~~--------------------------~~~~~~ 117 (213)
T 1hh8_A 83 QTEKYDLAIK-DLKEALIQLRGNQLID------------------YKI--------------------------LGLQFK 117 (213)
T ss_dssp HTTCHHHHHH-HHHHHHHTTTTCSEEE------------------CGG--------------------------GTBCCE
T ss_pred HcccHHHHHH-HHHHHHHhCCCccHHH------------------HHH--------------------------hccccC
Confidence 9999999999 9999999998765211 111 035567
Q ss_pred CCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 338 TNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 338 p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
| ..+.+++++| .++..+|++++|+..|+++++++|++
T Consensus 118 ~-----~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 118 L-----FACEVLYNIA-FMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp E-----EHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred c-----cchHHHHHHH-HHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8 8999999999 99999999999999999999999985
No 119
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.63 E-value=2.7e-15 Score=144.78 Aligned_cols=227 Identities=10% Similarity=-0.019 Sum_probs=175.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------CCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC--------GNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l 218 (433)
.|++++|+..+++++...+..+. ......++..+|.++...|++++|+..|++++... |....++.++
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 66 KGELTRSLALMQQTEQMARQHDV----WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 58999999999999999887531 12336678899999999999999999999999875 3345678899
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CCHHHHH-----H
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPN-----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--NNEAVKE-----N 286 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--~~~~~~~-----~ 286 (433)
|.++...|++++|...+++++.+.|. ...++..+|.++...|++++|.. ++++++.+.+ ..+..+. .
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS-QLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHhccCcchhHHHHHHHH
Confidence 99999999999999999999998775 35688899999999999999999 9999998743 2221222 2
Q ss_pred HHHHHHHHHHHHHhcccccccCCCccc----------hhhhhhhcCCCCCCCCCcc--cccCCCC-CCCccHHHHHHHHh
Q 013948 287 IRMAEQKLREERQRTGWDQTTSSSHYS----------QESNQSTGGFRSHGTPPSF--TMPFNTN-ALPTDIASMLMNMA 353 (433)
Q Consensus 287 l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~A~~~~--al~~~p~-~~~~~~~~a~~~la 353 (433)
++.++...|+.++|..+...+...... ..+..+...|++++|+..+ ++...+. ..+.....++..+|
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 344577888999988887666532111 1245677789999999888 5444331 01113445888889
Q ss_pred hcccccCCChhhHHHHHhhhcCCCCC
Q 013948 354 SNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
.++..+|++++|...+++++.+.+.
T Consensus 301 -~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 301 -QLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp -HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999887664
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.62 E-value=2.3e-14 Score=114.29 Aligned_cols=117 Identities=42% Similarity=0.627 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...++.+|.++...|++++|+..|.+++..+|++..+++.+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
..|++++|+. +++++++.+|.++.++..++.++...|
T Consensus 89 ~~~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIE-YYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999 999999999999999999999887653
No 121
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.62 E-value=2.8e-15 Score=150.56 Aligned_cols=203 Identities=13% Similarity=0.096 Sum_probs=169.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ----SQQYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.+++++|+.+|+++++. .+ +.+++.+|.++.. .+++++|+..|+++++. .++.+++.+|.+|
T Consensus 128 ~~~~~~A~~~~~~a~~~--~~----------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 193 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQ--GR----------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMY 193 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TC----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CC----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 47899999999999775 22 7889999999988 88999999999999876 5899999999999
Q ss_pred HH----hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 013948 223 TQ----IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK- 293 (433)
Q Consensus 223 ~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~- 293 (433)
.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+. +|+++++. .++.++..++.++..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~-~~~~a~~~--~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRV-LFSQSAEQ--GNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH-HHHHHHTT--TCHHHHHHHHHHHHHT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHC--CCHHHHHHHHHHHHCC
Confidence 98 89999999999999885 578899999999997 899999999 99999875 568899999999988
Q ss_pred ---HHHHHHhcccccccCCCccc----hhhhhhhcC-----CCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhccccc
Q 013948 294 ---LREERQRTGWDQTTSSSHYS----QESNQSTGG-----FRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQA 359 (433)
Q Consensus 294 ---~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~ 359 (433)
.++.++|..+++.+...... ..+.+|... +++++|+..| +++..+ +.+++++| .++..
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg-~~y~~ 340 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD-------ATAQANLG-AIYFR 340 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC-------HHHHHHHH-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC-------HHHHHHHH-HHHHh
Confidence 78899999988877533221 125667666 8899999888 665444 56888999 88877
Q ss_pred CC---ChhhHHHHHhhhcCC
Q 013948 360 QP---SQSRQGEDSNVSGSD 376 (433)
Q Consensus 360 ~g---~~~~A~~~~~~al~l 376 (433)
.| ++++|+.+|+++++.
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHHHHHHHC
Confidence 66 789999999999987
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.62 E-value=1.9e-14 Score=116.30 Aligned_cols=122 Identities=35% Similarity=0.560 Sum_probs=99.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ...+..+|.++...|++++|+..|++++...|.+..+++.+|.++...|
T Consensus 14 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALELDPRS----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred cCcHHHHHHHHHHHHHcCCcc----------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 477888888888888877665 6677778888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~ 279 (433)
++++|+..+++++...|.+..++..+|.++...|++++|+. ++++++..+|+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~~~ 135 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-YYQKALELDPR 135 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH-HHHHHHccCCC
Confidence 88888888888888888888888888888888888888888 88888887775
No 123
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.62 E-value=2.7e-15 Score=137.53 Aligned_cols=215 Identities=13% Similarity=0.015 Sum_probs=157.9
Q ss_pred chhHHHHHHHHHHhhcCCCCCCCCCCCC-------chHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCc
Q 013948 35 LEGLEVARECLTEVFKLDSPSADGQRKP-------DSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGE 107 (433)
Q Consensus 35 ~~~~e~A~~~~~kAl~ldP~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (433)
+.++.+|+++|.+|+++||+..+++... +.++.................. ..|.+......+..
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---------l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---------ISMSTLNARIAIGG 89 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---------CCGGGGCCEEECCT
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---------CChhhhhhhhccCC
Confidence 4669999999999999999999888766 4444444444433322111111 22333322222111
Q ss_pred cc--ccCCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHH
Q 013948 108 DW--TEEPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQG 185 (433)
Q Consensus 108 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg 185 (433)
.+ ...+ -.+...+.-.+...+.. .|++++|.+.|..++...|.. . ..+.+|
T Consensus 90 ~y~~~~~~---v~~r~dl~LayA~~L~~-------------~g~y~eA~~~l~~~~~~~p~~----------~-~~~~~a 142 (282)
T 4f3v_A 90 LYGDITYP---VTSPLAITMGFAACEAA-------------QGNYADAMEALEAAPVAGSEH----------L-VAWMKA 142 (282)
T ss_dssp TTCCCEEE---CSSHHHHHHHHHHHHHH-------------HTCHHHHHHHHTSSCCTTCHH----------H-HHHHHH
T ss_pred cccccccc---cCCHhHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhcCCch----------H-HHHHHH
Confidence 11 1111 12345555555555555 799999999999988876654 6 899999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHHcC
Q 013948 186 NRVMQSQQYSDAIELYSFAIALCGNN--AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID--PN-YSKAYSRLGLAYYAQG 260 (433)
Q Consensus 186 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g 260 (433)
.+++..++|++|+..|++++...+.. ..+++++|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|
T Consensus 143 ~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 143 VVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence 99999999999999999887643221 3589999999999999999999999999665 65 6789999999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013948 261 NYNDAIEKGFKKALQLDPNNEAVKENI 287 (433)
Q Consensus 261 ~~~~A~~~~~~~al~~~p~~~~~~~~l 287 (433)
+.++|.. .|++++..+|+ +.++..|
T Consensus 223 r~deA~~-~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 223 NESAAVA-LLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp CHHHHHH-HHHHHHHHSCC-HHHHHHH
T ss_pred CHHHHHH-HHHHHHhcCCc-HHHHHHH
Confidence 9999999 99999999999 7776666
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=1.6e-14 Score=147.27 Aligned_cols=141 Identities=12% Similarity=0.020 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ--QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..++++++.+.+++..+|++ ..+|+.++.++...+ +++++++.+.++++.+|.+..+|..++.++...
T Consensus 87 ~~~~~eL~~~~~~l~~~pK~----------y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l 156 (567)
T 1dce_A 87 ALVKAELGFLESCLRVNPKS----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA 156 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 35899999999999999998 999999999999999 779999999999999999999999999999999
Q ss_pred h-cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013948 226 H-QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ--------------GNYNDAIEKGFKKALQLDPNNEAVKENIRMA 290 (433)
Q Consensus 226 ~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~ 290 (433)
| .++++++++.++++.+|.+..+|..+|.++..+ +.++++++ ++.+++.++|++..+|..++.+
T Consensus 157 ~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~-~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 157 AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE-LVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH-HHHHHHHHCSSCSHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHH-HHHHHHhhCCCCccHHHHHHHH
Confidence 9 999999999999999999999999999999985 66899999 9999999999999999999999
Q ss_pred HHHHHHHHH
Q 013948 291 EQKLREERQ 299 (433)
Q Consensus 291 ~~~~~~~~~ 299 (433)
+...+++++
T Consensus 236 l~~~~~~~~ 244 (567)
T 1dce_A 236 LGRAEPHDV 244 (567)
T ss_dssp HSCCCCCSC
T ss_pred HhcCCCccc
Confidence 887776444
No 125
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=144.86 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=152.4
Q ss_pred chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc---
Q 013948 173 NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--------CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI--- 241 (433)
Q Consensus 173 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 241 (433)
..|....++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+.++++++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34666899999999999999999999999999995 5666889999999999999999999999999988
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 242 -----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD--------PNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 242 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
.|....++..+|.++...|++++|+. ++++++++. |....++..+|.++...|++++|..++..+.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEP-LCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678899999999999999999999 999999874 5567789999999999999999998877433
Q ss_pred CCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCC
Q 013948 309 SSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDE 377 (433)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~ 377 (433)
...... .-..+| ....++..+| .++..+|++++|+..++++++..
T Consensus 181 ~~~~~~------------------~~~~~~-----~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 181 EIYQTK------------------LGPDDP-----NVAKTKNNLA-SCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHT------------------SCTTCH-----HHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH------------------hCCCCH-----HHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHH
Confidence 110000 002256 8888999999 99999999999999999998753
No 126
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=3e-15 Score=148.86 Aligned_cols=187 Identities=9% Similarity=0.011 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh----hcHHHHHHHHHHHHhcCCCcHHHHHH
Q 013948 179 EIFKCQGNRVMQSQ---QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI----HQYAEAVRDCLKSIDIDPNYSKAYSR 251 (433)
Q Consensus 179 ~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~ 251 (433)
.+++.+|.++...| ++++|+..|+++.+..|..+..++++|.+|... +++++|+.+|+++. |.++.+++.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 37888888888888 888899999999888888888888888888665 68889999998887 888888899
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-----HHHHhcccccccCCCccchh-----hhh
Q 013948 252 LGLA-Y--YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLR-----EERQRTGWDQTTSSSHYSQE-----SNQ 318 (433)
Q Consensus 252 lg~~-~--~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-----~~~ 318 (433)
+|.+ + ...+++++|+. +|+++.+. +++.++.+||.++. .| ++++|..+++++. +.... +.+
T Consensus 254 Lg~~~~~~~~~~d~~~A~~-~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMK-YLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHH-HHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHH-HHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 9888 4 46788899998 88888854 47888888888887 55 7888888888777 33222 344
Q ss_pred hhcC----CCCCCCCCcccccCCCCCCCccHHHHHHHHhhccccc----CCChhhHHHHHhhhcCCCCCc
Q 013948 319 STGG----FRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQA----QPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 319 ~~~~----~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~----~g~~~~A~~~~~~al~l~P~~ 380 (433)
|..+ .++++|+..|....++ .++.+.+++| .+|.. ..+..+|..+|++|.+..+..
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~-----g~~~A~~~Lg-~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARN-----GQNSADFAIA-QLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTT-----TCTTHHHHHH-HHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhh-----ChHHHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 5553 4777777777222234 5567889999 77763 568999999999999987665
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.61 E-value=1.7e-14 Score=116.53 Aligned_cols=128 Identities=33% Similarity=0.484 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++...|.++.+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 259 QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 259 ~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
.|++++|+. +++++++..|.+..++..++.++...|++++|..++..+
T Consensus 82 ~~~~~~A~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIE-YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHH-HHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999 999999999999999999999999999999998876643
No 128
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.60 E-value=3.2e-14 Score=114.65 Aligned_cols=118 Identities=30% Similarity=0.454 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc-------HHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY-------SKAYS 250 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~ 250 (433)
+..++.+|.+++..|++++|+..|.+++..+|.++.+++++|.++...|++++|+.++++++.+.|.+ +.+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999998887 99999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013948 251 RLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREE 297 (433)
Q Consensus 251 ~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 297 (433)
.+|.++...|++++|+. +|++++++.| ++..+..++.+...+++.
T Consensus 84 ~la~~~~~~~~~~~A~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIH-FYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHH-HHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 9999999999 688999999888877653
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.59 E-value=1.4e-16 Score=146.02 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=174.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhcCCCHH------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQ-------GNRVMQSQQYSDAIELYSFAIALCGNNAV------ 213 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~al~~~p~~~~------ 213 (433)
.+++..|...|.+++..+|.. +++|..+ +.++...+++.+++..+++++.+.|....
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~----------~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESA----------CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred CCCHHHHHHHHHHHHHhChhh----------hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 489999999999999999988 9999999 89999999999999999999998876543
Q ss_pred ---------------HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 214 ---------------YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 214 ---------------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
++..++.++...|+|++|.+.|..++...|.+. +.+.+|.++++.++|++|+. .|++++...+
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~-~l~~a~~~~d 166 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVID-QVKSAGKWPD 166 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHH-HHTTGGGCSC
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHH-HHHHhhccCC
Confidence 444588999999999999999999999999999 99999999999999999999 9998877542
Q ss_pred CC--HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCcc-HHHHHHHHhhc
Q 013948 279 NN--EAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTD-IASMLMNMASN 355 (433)
Q Consensus 279 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~-~~~a~~~la~~ 355 (433)
.. ..+++.+|.++..+|++++|..++.++... ..+| . .+.+++.+| .
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g------------------------~~~P-----~~~~da~~~~g-l 216 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDS------------------------PAGE-----ACARAIAWYLA-M 216 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------------------------TTTT-----TTHHHHHHHHH-H
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC------------------------CCCc-----cccHHHHHHHH-H
Confidence 21 358999999999999999999998854321 1125 4 778999999 9
Q ss_pred ccccCCChhhHHHHHhhhcCCCCCccccccccccc
Q 013948 356 MPQAQPSQSRQGEDSNVSGSDEPGIRIGGNINLNF 390 (433)
Q Consensus 356 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~~~~l 390 (433)
++..+|+.++|...|+++++.+|+ ......+...
T Consensus 217 aL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~ 250 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP 250 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence 999999999999999999999999 6655555544
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=2.6e-14 Score=126.31 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=114.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++ .| + +.+++.+|.++...|++++|+..|++++..+|+++.+++++|.++..+|
T Consensus 19 ~~~~~~A~~~~~~a~--~~-~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ--DP-H----------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp TTCHHHHHHHHHTSS--SC-C----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHc--CC-C----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 589999999999996 22 2 6799999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYS----------------KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
++++|+..|++++++.|.+. .+++.+|.++...|++++|+. +|+++++++|++..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QLALATSMKSEPRH 156 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCCSGGG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH-HHHHHHHcCccccc
Confidence 99999999999999888766 999999999999999999999 99999999998744
No 131
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.58 E-value=1.4e-14 Score=140.34 Aligned_cols=195 Identities=11% Similarity=0.037 Sum_probs=163.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-------CHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-------NAVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la 219 (433)
.|++++|+..|++++.+.+... ..+..+.+++.+|.++...|++++|+.++.+++.+.+. .+.+++++|
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVS----DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCC----ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 6999999999999999876542 23556889999999999999999999999999988553 256889999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----hCCCCHHHHHHHH
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDP------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ-----LDPNNEAVKENIR 288 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~-----~~p~~~~~~~~l~ 288 (433)
.++..+|++++|+.+|++++.+.+ ....++.++|.++..+|++++|+. +|+++++ .+|....++..+|
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE-HFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHhhCChhHHHHHHHHH
Confidence 999999999999999999999743 135689999999999999999999 9999999 7888899999999
Q ss_pred HHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC---hhh
Q 013948 289 MAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS---QSR 365 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~---~~~ 365 (433)
.++..+|++++|..+++++..... -..+| .....+..++ .++...|+ +.+
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~---------------------~~~~~-----~~~~~~~~l~-~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHIT---------------------ARSHK-----FYKELFLFLQ-AVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC---------------------TTCCS-----CHHHHHHHHH-HHHSSSCCHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH---------------------HcCCH-----HHHHHHHHHH-HHHhCCCcHHHHHH
Confidence 999999999999998774331100 11134 6666778888 88999999 899
Q ss_pred HHHHHhhh
Q 013948 366 QGEDSNVS 373 (433)
Q Consensus 366 A~~~~~~a 373 (433)
|+..+++.
T Consensus 322 al~~~~~~ 329 (378)
T 3q15_A 322 LLSYFEKK 329 (378)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99888873
No 132
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.58 E-value=3.6e-14 Score=114.79 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHH
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA---VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRL 252 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 252 (433)
.+++.+|.+++..|++++|+..|++++..+|++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999998 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
|.++..+|++++|+. +|+++++..|+++.+......+...
T Consensus 83 a~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQ-TLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHH-HHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999 9999999999999877766655443
No 133
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.58 E-value=3.5e-15 Score=132.75 Aligned_cols=176 Identities=10% Similarity=0.007 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh----c
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH----Q 227 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~ 227 (433)
+|+.+|+++.+. .+ +.+++.+|.++...+++++|+.+|+++++. .++.+++++|.+|.. + +
T Consensus 4 eA~~~~~~aa~~--g~----------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GD----------RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--TC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC
T ss_pred hHHHHHHHHHHC--CC----------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC
Confidence 577788888875 33 889999999999999999999999999875 689999999999998 7 9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----HHHH
Q 013948 228 YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDP--NNEAVKENIRMAEQK----LREE 297 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~ 297 (433)
+++|+.+|++++. +.++.+++.||.+|.. .+++++|+. +|+++++..| .++.++.+||.++.. .+++
T Consensus 69 ~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 69 YPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAIT-LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHH-HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHH-HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999965 6799999999999998 899999999 9999999988 459999999999988 6678
Q ss_pred HHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccC-C-----ChhhHHHHHh
Q 013948 298 RQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQ-P-----SQSRQGEDSN 371 (433)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~-g-----~~~~A~~~~~ 371 (433)
++|..++++ ++.. | .++.+++++| .+|... | ++++|+.+|+
T Consensus 146 ~~A~~~~~~--------------------------A~~~-~-----~~~~a~~~Lg-~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 146 VKASEYFKG--------------------------SSSL-S-----RTGYAEYWAG-MMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHHHHHHHH--------------------------HHHT-S-----CTTHHHHHHH-HHHHHCBTTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHH--------------------------HHHc-C-----CCHHHHHHHH-HHHHcCCCCCCCCCHHHHHHHHH
Confidence 888887764 2333 4 4556899999 777643 3 8999999999
Q ss_pred hhcCCCC
Q 013948 372 VSGSDEP 378 (433)
Q Consensus 372 ~al~l~P 378 (433)
++++..+
T Consensus 193 ~A~~~g~ 199 (212)
T 3rjv_A 193 VSCLEGF 199 (212)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9987643
No 134
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.58 E-value=3.7e-14 Score=137.07 Aligned_cols=125 Identities=25% Similarity=0.415 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIA----------------LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
+..+..+|..++..|+|++|+..|+++++ .+|.+..+|+++|.++.++|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 77899999999999999999999999999 77888999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccc
Q 013948 242 DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGW 303 (433)
Q Consensus 242 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (433)
+|+++.+++.+|.++..+|++++|+. +|+++++++|++..++..++.++..+++.+++...
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~-~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALA-DLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999998877553
No 135
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.8e-14 Score=117.14 Aligned_cols=114 Identities=26% Similarity=0.401 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
.+..++.+|..++..|++++|+..|++++..+|++ ..+++++|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 37889999999999999999999999999999988 899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 254 LAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
.++...|++++|+. +|+++++++|++..++..++.+.
T Consensus 107 ~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 107 QALEKLGRLDQAVL-DLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHTCHHHHHH-HHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHH-HHHHHHHcCCCcHHHHHHHHHHH
Confidence 99999999999999 99999999999999998887764
No 136
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=8.5e-15 Score=141.25 Aligned_cols=225 Identities=7% Similarity=-0.086 Sum_probs=180.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+..+++++...|... ......++..+|.++...|++++|+..+++++.+.|.. ..++.++|.
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGW-----FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5899999999999999876431 22345678899999999999999999999999886543 245789999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC-----CHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDID--------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN-----NEAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~-----~~~~~~~l 287 (433)
++...|++++|+..+++++.+. |....++..+|.++...|++++|.. ++++++.+.+. ...++..+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-SARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHhhccCcHHHHHHHHHH
Confidence 9999999999999999999875 3456788899999999999999999 99999998775 34678899
Q ss_pred HHHHHHHHHHHHhcccccccCC---Ccc---chh-------hhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHH
Q 013948 288 RMAEQKLREERQRTGWDQTTSS---SHY---SQE-------SNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNM 352 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~~---~~~---~~~-------~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~l 352 (433)
+.++...|++++|...+..+.. ... ... ...+...|++++|...+ ++...|.. +......+..+
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~l 259 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN-NHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT-CGGGHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc-chhhHHHHHHH
Confidence 9999999999999888665431 111 111 13366789999999988 77666621 11224467888
Q ss_pred hhcccccCCChhhHHHHHhhhcCCCCC
Q 013948 353 ASNMPQAQPSQSRQGEDSNVSGSDEPG 379 (433)
Q Consensus 353 a~~~~~~~g~~~~A~~~~~~al~l~P~ 379 (433)
+ .++..+|++++|...+++++...+.
T Consensus 260 a-~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 260 A-RAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp H-HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 9 9999999999999999999877544
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=2.2e-15 Score=126.06 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 196 DAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 196 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
.+-..|++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+. +|++++.
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~ 83 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH-SYSYGAV 83 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHh
Confidence 334568899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 276 LDPNNEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 276 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
++|+++.+++.+|.++..+|++++|..++..+
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999887754
No 138
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=5.4e-15 Score=147.06 Aligned_cols=215 Identities=10% Similarity=0.070 Sum_probs=162.8
Q ss_pred chHHHHHHHHHHHHHHHhhccccc-----------------------cchhhHHHHHHHHHHHHHHccCH----HHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHA-----------------------YNQKNLAEIFKCQGNRVMQSQQY----SDAIEL 200 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~-----------------------~~~~~~~~~~~~lg~~~~~~~~~----~~A~~~ 200 (433)
+++++|+.+|+++++..+...... ......+.+++.+|.++...+.+ +++..+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 588888888888887432211000 00111245677778888777744 444444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 013948 201 YSFAIALCGNNAVYYSNRAAAYTQIH---QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ----GNYNDAIEKGFKKA 273 (433)
Q Consensus 201 ~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~~a 273 (433)
+..+...+| .+++++|.+|...| ++++|+.+|+++...+|.....++.+|.+|... +++++|+. +|+++
T Consensus 168 ~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~-~~~~a 243 (452)
T 3e4b_A 168 CKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA-LLEKI 243 (452)
T ss_dssp HHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH-HHHHH
T ss_pred HHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH-HHHHH
Confidence 555544444 49999999999999 999999999999999999999999999999776 79999999 99999
Q ss_pred HhhCCCCHHHHHHHHHH-H--HHHHHHHHhcccccccCCCccch----hhhhhhcC----CCCCCCCCcc--cccCCCCC
Q 013948 274 LQLDPNNEAVKENIRMA-E--QKLREERQRTGWDQTTSSSHYSQ----ESNQSTGG----FRSHGTPPSF--TMPFNTNA 340 (433)
Q Consensus 274 l~~~p~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~----~~~~~A~~~~--al~~~p~~ 340 (433)
. |+++.+++++|.+ + ...+++++|..+++++....... .+.+|..+ .++++|+..| +. |
T Consensus 244 a---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~-- 315 (452)
T 3e4b_A 244 A---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---G-- 315 (452)
T ss_dssp G---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---T--
T ss_pred c---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---C--
Confidence 8 9999999999999 4 45678999999988776322211 14555533 3899999999 55 8
Q ss_pred CCccHHHHHHHHhhccccc----CCChhhHHHHHhhhcCCCC
Q 013948 341 LPTDIASMLMNMASNMPQA----QPSQSRQGEDSNVSGSDEP 378 (433)
Q Consensus 341 ~~~~~~~a~~~la~~~~~~----~g~~~~A~~~~~~al~l~P 378 (433)
.++.+++++| .+|.. ..++++|+.+|+++.+...
T Consensus 316 ---g~~~A~~~Lg-~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 316 ---REVAADYYLG-QIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp ---TCHHHHHHHH-HHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred ---CCHHHHHHHH-HHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8899999999 88776 4499999999999988643
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.56 E-value=4.8e-16 Score=148.52 Aligned_cols=153 Identities=16% Similarity=0.077 Sum_probs=141.2
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---------------HHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---------------SKAYSRLGL 254 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 254 (433)
..+++++|+..|++++..+|+++.+++++|.++...|++++|+..|+++++++|.+ ..+|+++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccc
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTM 334 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al 334 (433)
++..+|++++|+. +|+++++++|+++.+++.+|.++..+|++++|...+.+ ++
T Consensus 205 ~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~--------------------------al 257 (336)
T 1p5q_A 205 CHLKLQAFSAAIE-SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK--------------------------VL 257 (336)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HH
T ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH--------------------------HH
Confidence 9999999999999 99999999999999999999999999999999887663 67
Q ss_pred cCCCCCCCccHHHHHHHHhhcccccCCChhhH-HHHHhhhcC
Q 013948 335 PFNTNALPTDIASMLMNMASNMPQAQPSQSRQ-GEDSNVSGS 375 (433)
Q Consensus 335 ~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A-~~~~~~al~ 375 (433)
.++| ++..++..++ .++..+|++++| ...|++.+.
T Consensus 258 ~l~P-----~~~~a~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 258 QLYP-----NNKAAKTQLA-VCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHCS-----SCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCC-----CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899 9999999999 999999999999 456666653
No 140
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.56 E-value=1.1e-14 Score=155.92 Aligned_cols=283 Identities=11% Similarity=0.061 Sum_probs=192.8
Q ss_pred CCCchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCccccc
Q 013948 32 GVDLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTE 111 (433)
Q Consensus 32 ~~~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (433)
..+.+.+++|+.+|+|+- .+.. ....+++...+.+++.+..-
T Consensus 1059 ai~lglyEEAf~IYkKa~--~~~~-----A~~VLie~i~nldrAiE~Ae------------------------------- 1100 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD--VNTS-----AVQVLIEHIGNLDRAYEFAE------------------------------- 1100 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC--CHHH-----HHHHHHHHHhhHHHHHHHHH-------------------------------
Confidence 347788999999999983 1111 12334444455555544110
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc
Q 013948 112 EPDSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS 191 (433)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~ 191 (433)
......++.++..+... .|++++|+..|.++ ++ +..|..+|.++...
T Consensus 1101 -----rvn~p~vWsqLAKAql~-------------~G~~kEAIdsYiKA-----dD----------~say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1101 -----RCNEPAVWSQLAKAQLQ-------------KGMVKEAIDSYIKA-----DD----------PSSYMEVVQAANTS 1147 (1630)
T ss_pred -----hcCCHHHHHHHHHHHHh-------------CCCHHHHHHHHHhc-----CC----------hHHHHHHHHHHHHc
Confidence 01123444555555555 78899999998776 33 67888899999999
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013948 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFK 271 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 271 (433)
|+|++|+++|..|++..++ +.+-..+|.+|.+++++++ ++.|- ...+...+..+|..+...|+|++|.. +|.
T Consensus 1148 GkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~-~Y~ 1219 (1630)
T 1xi4_A 1148 GNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKL-LYN 1219 (1630)
T ss_pred CCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHH-HHH
Confidence 9999999999998887743 2333357888888887774 44442 23344566778888888888888888 888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCcc-chhhhhhhcCCCCCCCCCcc-cccCCCCCCCccHHHHH
Q 013948 272 KALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHY-SQESNQSTGGFRSHGTPPSF-TMPFNTNALPTDIASML 349 (433)
Q Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~-al~~~p~~~~~~~~~a~ 349 (433)
++ ..|..++.++.++|++++|...+.++..... ......+...|+|..|.... .+..+| + .+
T Consensus 1220 kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~-----d---eL 1283 (1630)
T 1xi4_A 1220 NV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----D---EL 1283 (1630)
T ss_pred hh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCH-----H---HH
Confidence 85 4788888888888888888888877753321 11134456667777777766 666667 4 34
Q ss_pred HHHhhcccccCCChhhHHHHHhhhcCCCCCc-ccccccccccccCCcHHHHHHHHHHHhhcC
Q 013948 350 MNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGGNINLNFGENMPEDITGALRSMMEMFS 410 (433)
Q Consensus 350 ~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~ 410 (433)
..++ ..|...|.+++|+..+++++.++|.. .....+........++++.+.++.+.++..
T Consensus 1284 eeli-~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1284 EELI-NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHH-HHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 4777 88888999999999999999999876 333222221126788888888877776654
No 141
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.56 E-value=2e-14 Score=119.54 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=93.4
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY----------AEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 259 (433)
+.+.|++|+..|+++++++|+++.+|+++|.++..++++ ++|+..|+++|+++|+++.+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred C-----------CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013948 260 G-----------NYNDAIEKGFKKALQLDPNNEAVKENIRMAE 291 (433)
Q Consensus 260 g-----------~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~ 291 (433)
| ++++|+. +|++|++++|++...+..+..+-
T Consensus 94 g~l~P~~~~a~g~~~eA~~-~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQ-FFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHH-HHHHHHHhCCCCHHHHHHHHHHH
Confidence 5 8999999 99999999999988877776554
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.55 E-value=1.5e-13 Score=115.91 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=110.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|.+++..+|+++.+++++|.++..+|
T Consensus 26 ~~~~~~A~~~~~~al~~~~~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 26 AKDYENAIKFYSQAIELNPSN----------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHhCCCC----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 589999999999999999887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhh
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGL--AYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~--~~~~~g~~~~A~~~~~~~al~~ 276 (433)
++++|+.+|+++++++|.+..++..++. .+...|++++|+. .+.++..+
T Consensus 96 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~ 146 (166)
T 1a17_A 96 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA-GDEHKRSV 146 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH-cccchHHH
Confidence 9999999999999999999988855544 4888999999999 88876543
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.54 E-value=6.1e-14 Score=132.66 Aligned_cols=177 Identities=10% Similarity=0.002 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH-QYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
..++..+..+....+..++|++.+.++|.++|++..+|+.++.++..++ .+++++..+++++..+|++..+|..++.++
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444444444445566779999999999999999999999999999999 599999999999999999999999999999
Q ss_pred HHc-C-CHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH--------HhcccccccCCCccchhhhhhhcCCCCC
Q 013948 257 YAQ-G-NYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER--------QRTGWDQTTSSSHYSQESNQSTGGFRSH 326 (433)
Q Consensus 257 ~~~-g-~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (433)
... + ++++++. .+.++++.+|.+..+|...+.+...++.++ ++..+..+
T Consensus 134 ~~l~~~~~~~EL~-~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k-------------------- 192 (349)
T 3q7a_A 134 DRISPQDPVSEIE-YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE-------------------- 192 (349)
T ss_dssp HHHCCSCCHHHHH-HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH--------------------
T ss_pred HHhcCCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH--------------------
Confidence 998 8 9999999 999999999999999999999999998876 33333221
Q ss_pred CCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC-------hhhHHHHHhhhcCCCCCc-ccccccc
Q 013948 327 GTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS-------QSRQGEDSNVSGSDEPGI-RIGGNIN 387 (433)
Q Consensus 327 ~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~-------~~~A~~~~~~al~l~P~~-~~~~~~~ 387 (433)
++..+| .+..+|..++ .++..+++ ++++++++.+++.++|++ +.+..+.
T Consensus 193 ------~I~~dp-----~N~SAW~~R~-~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr 249 (349)
T 3q7a_A 193 ------MLRVDG-----RNNSAWGWRW-YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLR 249 (349)
T ss_dssp ------HHHHCT-----TCHHHHHHHH-HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------HHHhCC-----CCHHHHHHHH-HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 678899 9999999999 99998887 799999999999999999 5554433
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.53 E-value=1.7e-13 Score=127.98 Aligned_cols=172 Identities=11% Similarity=0.000 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA------VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------ 245 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 245 (433)
...+...+..+...|+|++|++.+.+++...+... ..++.+|.++...|++++|+.++++++...+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 56777889999999999999999999999887654 456778999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhh
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKAL---QLDPNNE----AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQ 318 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 318 (433)
..++..+|.+|...|++++|+. +|++++ +..|++. .++.++|.++..+|++++|..++.++.....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~-~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~------ 227 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGID-LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC------ 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH------
Confidence 6789999999999999999999 999999 5566643 6889999999999999999998875432110
Q ss_pred hhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhH-HHHHhhhcCC
Q 013948 319 STGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQ-GEDSNVSGSD 376 (433)
Q Consensus 319 ~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A-~~~~~~al~l 376 (433)
...... ..+.+++++| .++..+|++++| ..+|++|+.+
T Consensus 228 --------------~~~~~~-----~~~~~~~~lg-~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 228 --------------RINSMA-----LIGQLYYQRG-ECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp --------------HTTBCS-----SHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --------------hcCcHH-----HHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHH
Confidence 111223 5688999999 999999999999 7889999764
No 145
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=1.6e-14 Score=144.58 Aligned_cols=128 Identities=29% Similarity=0.487 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.+.+++.+|.+++..|++++|+..|+++++++|++..+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhccccc
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA--EQKLREERQRTGWDQ 305 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 305 (433)
..+|++++|+. +|+++++++|++..++..++.+ +...|++++|...+.
T Consensus 85 ~~~g~~~eA~~-~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALR-DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHH-HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999 9999999999999999999998 778899999988876
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.6e-13 Score=108.71 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=98.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ +.+++.+|.++...|++++|+..|++++.++|+++.+|+++|.++..+|
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIKRAPED----------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHhCCCC----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 599999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHc
Q 013948 227 QYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQ 259 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~ 259 (433)
++++|+..|+++++++ |.+..++..++.+...+
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 87 EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999 99999999998887653
No 147
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.51 E-value=3.4e-14 Score=118.48 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN-------YSK-----AYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
.+..+.++|.++...|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+. ++.++|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~-~~~kAL~l-- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH-SADKALHY-- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHh--
Confidence 3567899999999999999999999999999999 444 99999999999999999999 99999986
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHH----HHHhh
Q 013948 279 NNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASML----MNMAS 354 (433)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~----~~la~ 354 (433)
+.. +++++| +++.+| +++|
T Consensus 87 ------------------~n~---------------------------------~~e~~p-----d~~~A~~~~~~~rG- 109 (159)
T 2hr2_A 87 ------------------FNR---------------------------------RGELNQ-----DEGKLWISAVYSRA- 109 (159)
T ss_dssp ------------------HHH---------------------------------HCCTTS-----THHHHHHHHHHHHH-
T ss_pred ------------------hhc---------------------------------cccCCC-----chHHHHHHHHHhHH-
Confidence 121 367899 999999 9999
Q ss_pred cccccCCChhhHHHHHhhhcCCCCCccc
Q 013948 355 NMPQAQPSQSRQGEDSNVSGSDEPGIRI 382 (433)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~al~l~P~~~~ 382 (433)
.++..+|++++|+.+|+++++++|++..
T Consensus 110 ~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 110 LALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999999999999999733
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.51 E-value=1.7e-14 Score=119.57 Aligned_cols=109 Identities=11% Similarity=0.053 Sum_probs=101.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 199 ELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 199 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
..|.+++.++|++...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+. +|++++.++|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQ-SYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcCC
Confidence 567888999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 279 NNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
+++.++..+|.++..+|++++|..++..+.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999877543
No 149
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.51 E-value=7.4e-14 Score=109.26 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--cHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPN--YSKAYSRLGLA 255 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 255 (433)
..+++.+|.+++..|++++|+..|++++..+|.+..+++++|.++...|++++|+..++++++.+|. +..+++.+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHc-CCHHHHHHHHHHHHHhhCCCCH
Q 013948 256 YYAQ-GNYNDAIEKGFKKALQLDPNNE 281 (433)
Q Consensus 256 ~~~~-g~~~~A~~~~~~~al~~~p~~~ 281 (433)
+... |++++|+. ++++++...|.++
T Consensus 86 ~~~~~~~~~~A~~-~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEI-AEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHH-HHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHH-HHHHHhhcccCCC
Confidence 9999 99999999 9999999998753
No 150
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.50 E-value=1.4e-13 Score=114.52 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=84.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhcCCCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQY----------SDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~ 216 (433)
.+.|++|++.++++++++|.+ +.+|+.+|.++...+++ ++|+..|++||+++|++..+|+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~----------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~ 84 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLD----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH
Confidence 579999999999999999998 99999999999988775 5999999999999999999999
Q ss_pred HHHHHHHHhh-----------cHHHHHHHHHHHHhcCCCcH
Q 013948 217 NRAAAYTQIH-----------QYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 217 ~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~ 246 (433)
++|.+|..+| ++++|+.+|++|++++|++.
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 9999999885 89999999999999999974
No 151
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.50 E-value=2e-14 Score=114.84 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=88.8
Q ss_pred HccCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 013948 190 QSQQYSDAIELYSFAIAL---CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
..|++++|+..|++++++ +|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHH
Q 013948 267 EKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
. +|++++...|+++.+......
T Consensus 82 ~-~~~~al~~~p~~~~~~~~~~a 103 (117)
T 3k9i_A 82 E-LLLKIIAETSDDETIQSYKQA 103 (117)
T ss_dssp H-HHHHHHHHHCCCHHHHHTHHH
T ss_pred H-HHHHHHHhCCCcHHHHHHHHH
Confidence 9 999999999999887654433
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.49 E-value=6.8e-14 Score=113.66 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 210 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
+.+.++.++|.++++.|+|++|+.+|+++++++|+++.+|.++|.+|..+|+|++|+. +++++++++|++...+.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~---- 80 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ-FCEKAVEVGRETRADYK---- 80 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCCHH----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHH-HHHHHHHhCcccchhhH----
Confidence 3467788999999999999999999999999999999999999999999999999999 99999998875433222
Q ss_pred HHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHH
Q 013948 290 AEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGED 369 (433)
Q Consensus 290 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~ 369 (433)
..+.++.++| .++..+|++++|+.+
T Consensus 81 ------------------------------------------------------~~a~~~~~lg-~~~~~~~~~~~A~~~ 105 (127)
T 4gcn_A 81 ------------------------------------------------------LIAKAMSRAG-NAFQKQNDLSLAVQW 105 (127)
T ss_dssp ------------------------------------------------------HHHHHHHHHH-HHHHHTTCHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHH-HHHHHcCCHHHHHHH
Confidence 3344566777 777777888888888
Q ss_pred HhhhcCCCCC
Q 013948 370 SNVSGSDEPG 379 (433)
Q Consensus 370 ~~~al~l~P~ 379 (433)
|+++++..|+
T Consensus 106 ~~kal~~~~~ 115 (127)
T 4gcn_A 106 FHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHhhCcC
Confidence 8888777665
No 153
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.49 E-value=9.6e-14 Score=123.35 Aligned_cols=145 Identities=16% Similarity=0.100 Sum_probs=127.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ----QYSDAIELYSFAIALCGNNAVYYSNRAAAY 222 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 222 (433)
.+++++|+.+|+++++. .+ +.+++.+|.++.. + ++++|+.+|+++++ +.++.+++++|.+|
T Consensus 31 ~~~~~~A~~~~~~a~~~--g~----------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y 95 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQ--GD----------GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVL 95 (212)
T ss_dssp HTCHHHHHHHHHHHHHT--TC----------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc--CC----------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence 37899999999999875 23 7899999999988 6 89999999999964 67999999999999
Q ss_pred HH----hhcHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013948 223 TQ----IHQYAEAVRDCLKSIDIDP--NYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQ 292 (433)
Q Consensus 223 ~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (433)
.. .+++++|+.+|+++++..| .++.+++.||.+|.. .+++++|+. +|++++++ |.++.++.+||.+|.
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE-YFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH-HHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHHc-CCCHHHHHHHHHHHH
Confidence 88 8899999999999999988 469999999999999 889999999 99999998 778889999999987
Q ss_pred HH-H-----HHHHhcccccccC
Q 013948 293 KL-R-----EERQRTGWDQTTS 308 (433)
Q Consensus 293 ~~-~-----~~~~a~~~~~~~~ 308 (433)
.. | +.++|..+++.+.
T Consensus 174 ~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 174 QGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HCBTTTBCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHH
Confidence 64 3 6888888877543
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=4.6e-13 Score=107.61 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=102.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..+.+++..+|++..+++.+|.++...|
T Consensus 25 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIELNPAN----------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhC
Confidence 589999999999999998877 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNY 262 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 262 (433)
++++|+..++++++++|+++.++..+|.++...|++
T Consensus 95 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 95 KHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998875
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.49 E-value=7.2e-14 Score=139.75 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=118.4
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 013948 137 FRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 137 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 216 (433)
+...+......|++++|+..|+++++.+|.+ +.++..+|.++...|++++|+..|+++++++|+++.+++
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 78 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSN----------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3444555556899999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHHH-----------HHHhhCCCC
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA--YYAQGNYNDAIEKGFK-----------KALQLDPNN 280 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~-----------~al~~~p~~ 280 (433)
++|.+|..+|++++|+..|+++++++|++..++..++.+ +...|++++|+. .++ +++.++|+.
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA-GDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc-cccccchhHhhhhhhhccccccc
Confidence 999999999999999999999999999999999999999 889999999999 999 888877764
No 156
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.49 E-value=3.7e-14 Score=135.44 Aligned_cols=129 Identities=23% Similarity=0.364 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA-----------------VYYSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
.+..++.+|..++..|+|++|+..|++++.+.|++. .+|+++|.|+..+|+|++|+.+|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 378899999999999999999999999999999877 499999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHhcccccc
Q 013948 240 DIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKL-REERQRTGWDQT 306 (433)
Q Consensus 240 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~ 306 (433)
+++|+++.+|+++|.++..+|++++|+. +|+++++++|++..++..++.+.... +..+++...+.+
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~-~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARD-DFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHTTC--------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999999999999885544 444444444443
No 157
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.48 E-value=6.8e-14 Score=120.10 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=108.7
Q ss_pred HHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCH--HH
Q 013948 188 VMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA-YYAQGNY--ND 264 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~ 264 (433)
+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|+++++++|+++.+++.+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 265 AIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 265 A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
|+. +|+++++++|+++.++..+|.++...|++++|...+..
T Consensus 100 A~~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 100 TRA-MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHH-HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999 99999999999999999999999999999999888764
No 158
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.48 E-value=5.3e-13 Score=124.55 Aligned_cols=156 Identities=10% Similarity=0.032 Sum_probs=130.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|++.+++++...+... ........++.+|.++...|++++|+..|++++...+.. ..+++++|.
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHP----EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCH----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccCCh----hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 5899999999999998765431 112335567779999999999999999999999876544 668999999
Q ss_pred HHHHhhcHHHHHHHHHHHH---hcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC------CHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSI---DIDPNYS----KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN------NEAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~------~~~~~~~l 287 (433)
+|...|++++|+.+|++++ +..|++. .+++++|.+|..+|+|++|+. ++++++++.+. ...++.++
T Consensus 164 ~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~-~~~kal~~~~~~~~~~~~~~~~~~l 242 (293)
T 2qfc_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY-QVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTBCSSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH-HHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999999999999999 4566643 689999999999999999999 99999987643 27789999
Q ss_pred HHHHHHHHHHHHh-ccccccc
Q 013948 288 RMAEQKLREERQR-TGWDQTT 307 (433)
Q Consensus 288 ~~~~~~~~~~~~a-~~~~~~~ 307 (433)
|.++..+|++++| ..++.++
T Consensus 243 g~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 243 GECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHH
Confidence 9999999999998 6655543
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=6.2e-13 Score=112.73 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=96.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++.++|.+ ..+++.+|.+++..|++++|+..|++++.++|+++.+|+++|.++..+|
T Consensus 24 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALSIAPAN----------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCcC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 599999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
++++|+.+|+++++++|++..+|+.++.....
T Consensus 94 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 99999999999999999999988877766543
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.48 E-value=8.3e-13 Score=115.61 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=105.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccc------cchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHA------YNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
.|++++|+..|++++...|.+.... ........++..+|.++...|++++|+..|++++.++|++..+++.+|.
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 130 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGV 130 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 6999999999999999988762100 0001123789999999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al 274 (433)
++..+|++++|+..|+++++++|++..++..++.++...++..++....+.+.+
T Consensus 131 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 131 ANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998888741444443
No 161
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.47 E-value=3e-13 Score=125.64 Aligned_cols=149 Identities=12% Similarity=0.073 Sum_probs=126.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|++..+++++|.++..+|
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLV----------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCcc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 599999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcH-----HHHH--------------------------HHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 227 QYAEAVRDCLKSIDIDPNYS-----KAYS--------------------------RLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~-----~~~~--------------------------~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
++++|+..|+++++++|+++ .++. .++.. ..|++++|+. .++++++
T Consensus 87 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~-~~~~al~ 163 (281)
T 2c2l_A 87 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELE-ECQRNHE 163 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHT-TTSGGGT
T ss_pred CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHH-HHHhhhc
Confidence 99999999999999988652 1111 12222 3578889999 8999999
Q ss_pred hCCCCHHHHHHHHHHHHHH-HHHHHhcccccccC
Q 013948 276 LDPNNEAVKENIRMAEQKL-REERQRTGWDQTTS 308 (433)
Q Consensus 276 ~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~ 308 (433)
++|++......++.++... +.++++...+..+.
T Consensus 164 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 164 GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9998888888887777665 55677776665443
No 162
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.47 E-value=1.3e-13 Score=110.03 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=89.4
Q ss_pred cchHHHHHHHHHHHHHH---HhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINE---MEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 223 (433)
.|++++|+..|+++++. +|.+ ..+++.+|.++...|++++|+..|+++++++|+++.+++++|.++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDL----------AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 58999999999999998 5665 8999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA 258 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 258 (433)
.+|++++|+..+++++...|+++........+...
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999998776544444333
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.47 E-value=9.1e-13 Score=111.41 Aligned_cols=119 Identities=12% Similarity=0.055 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccc--------cccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGA--------HAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
.|+|++|+..|++++...+.... .....+....++..+|.+++..|+|++|+..+++++.++|+++.+|+.+
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 59999999999999999433210 0000344588999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYS-KAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A 265 (433)
|.++..+|++++|+..|+++++++|+++ .+...++.+....+++.+.
T Consensus 104 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 104 AKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 7788888887766555443
No 164
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-12 Score=105.96 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=101.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|
T Consensus 29 ~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIKRNPKD----------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK 98 (133)
T ss_dssp TTCSHHHHHHHHHHHTTCTTC----------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcCCCc----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence 589999999999999998877 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
++++|+.+|+++++++|.+..++..++.++..+|+
T Consensus 99 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 99 DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998774
No 165
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.46 E-value=4.1e-14 Score=137.03 Aligned_cols=196 Identities=12% Similarity=0.060 Sum_probs=106.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 225 (433)
..|++++|+.+++.+.+..+. +.+...++.+|.+.|++.++.++++. | +...|.++|..+...
T Consensus 73 ~~g~~EeAi~yl~~ark~~~~-----------~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKKARE-----------SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDE 135 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTTC-----C----------------
T ss_pred hCCCHHHHHHHHHHHHHhCcc-----------chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHc
Confidence 368999999999988885332 45677788999999999999888853 4 446999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 226 HQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
|+|++|..+|.++ ..|..+|.++.++|+|++|++ +++++ +++.+|.....++...|+++.|..+..
T Consensus 136 g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVe-a~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 136 KMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD-GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp -CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHH-HHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred CCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHH-HHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999987 478899999999999999999 99998 578999999999999999999977766
Q ss_pred ccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc-cccc
Q 013948 306 TTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI-RIGG 384 (433)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~ 384 (433)
. |..+| +... .+. .+|...|++++|+..+++++.++|.. ....
T Consensus 202 ~---------------------------L~~~a-----d~l~---~lv-~~Yek~G~~eEai~lLe~aL~le~ah~~~ft 245 (449)
T 1b89_A 202 H---------------------------IVVHA-----DELE---ELI-NYYQDRGYFEELITMLEAALGLERAHMGMFT 245 (449)
T ss_dssp T---------------------------TTTCH-----HHHH---HHH-HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred H---------------------------HHhCH-----hhHH---HHH-HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHH
Confidence 3 33455 4432 355 66777777777777777777777655 2222
Q ss_pred ccccccccCCcHHHHHHHHHHHhh
Q 013948 385 NINLNFGENMPEDITGALRSMMEM 408 (433)
Q Consensus 385 ~~~~~l~~~~~~~~~~a~~~~~~~ 408 (433)
.+.....+..++.+.+.++.+..+
T Consensus 246 el~il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 246 ELAILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222111256666666666555443
No 166
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.46 E-value=1.5e-13 Score=128.34 Aligned_cols=172 Identities=10% Similarity=-0.015 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV------YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------ 245 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 245 (433)
...+...+..++..|+|++|+..+++++...+..+. .+..+|.++...+++++|+.+|++++.+.+..
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 344555678889999999999999999998777654 34468999999999999999999999975442
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhh
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-------DPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQ 318 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 318 (433)
..++..+|.+|..+|++++|+. +|+++++. .+....++.++|.++..+|++++|..++..+.....
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~------ 227 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGID-LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC------ 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------
Confidence 3479999999999999999999 99999953 122345889999999999999999998774432110
Q ss_pred hhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC-hhhHHHHHhhhcCC
Q 013948 319 STGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS-QSRQGEDSNVSGSD 376 (433)
Q Consensus 319 ~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~-~~~A~~~~~~al~l 376 (433)
.....+ ..+.+++++| .++..+|+ +++|+.+|++|+.+
T Consensus 228 --------------~~~~~~-----~~~~~~~~lg-~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 228 --------------RINSMA-----LIGQLYYQRG-ECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp --------------HTTBCT-----THHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --------------HcCcHH-----HHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHH
Confidence 122334 6689999999 99999995 69999999999875
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.45 E-value=1e-14 Score=145.14 Aligned_cols=147 Identities=17% Similarity=0.161 Sum_probs=133.1
Q ss_pred HccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---------------HHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---------------SKAYSRLGL 254 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 254 (433)
..+++++|+..|..++..+|+.+..+.++|.+++..|+|++|+..|+++++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999998 799999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccc
Q 013948 255 AYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTM 334 (433)
Q Consensus 255 ~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al 334 (433)
|+..+|+|++|+. +|+++++++|++..+++++|.++..+|++++|...+.+ ++
T Consensus 326 ~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~--------------------------al 378 (457)
T 1kt0_A 326 CYLKLREYTKAVE-CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK--------------------------VL 378 (457)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------HH
T ss_pred HHHHhcCHHHHHH-HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHH--------------------------HH
Confidence 9999999999999 99999999999999999999999999999998887663 67
Q ss_pred cCCCCCCCccHHHHHHHHhhcccccCCChhhHHHH
Q 013948 335 PFNTNALPTDIASMLMNMASNMPQAQPSQSRQGED 369 (433)
Q Consensus 335 ~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~ 369 (433)
.++| ++..++..++ .++..+|++++|...
T Consensus 379 ~l~P-----~~~~a~~~l~-~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 379 EVNP-----QNKAARLQIS-MCQKKAKEHNERDRR 407 (457)
T ss_dssp TTC---------CHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HhCC-----CCHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 7899 9999999999 999999999988754
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.45 E-value=9.9e-13 Score=105.77 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=82.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|+++++.+|.+ +.+|+.+|.++...|++++|+..|+++++++|+++.+++++|.++...|
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPER----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 589999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSK 247 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~ 247 (433)
++++|+..|+++++++|++..
T Consensus 100 ~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999998754
No 169
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.45 E-value=4e-13 Score=125.34 Aligned_cols=157 Identities=10% Similarity=0.024 Sum_probs=128.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+..+++++...+... ........+..+|.++...+++++|+..|++++.+.+.. ..++.++|.
T Consensus 88 ~~~y~~a~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELKKEEYHP----EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp TTCHHHHHHHHHHHHTTCCCCH----HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccccCCh----HHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 5899999999999998654431 011123445568999999999999999999999965432 447999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDI-------DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~~~l 287 (433)
+|..+|++++|+.+|+++++. .+....+++++|.+|..+|+|++|+. ++++++++.+.. ..++.++
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~-~~~~al~~~~~~~~~~~~~~~~~~l 242 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY-QVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 999999999999999999953 23345689999999999999999999 999999886543 7899999
Q ss_pred HHHHHHHHH-HHHhcccccccC
Q 013948 288 RMAEQKLRE-ERQRTGWDQTTS 308 (433)
Q Consensus 288 ~~~~~~~~~-~~~a~~~~~~~~ 308 (433)
|.++..+|+ +++|..+++++.
T Consensus 243 g~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 243 GECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHH
Confidence 999999995 689988877544
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.42 E-value=1.6e-13 Score=130.99 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=81.6
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccc-------hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYN-------QKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNR 218 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~-------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 218 (433)
..|++++|+..|++++...|.+...... ......+++.+|.++...|+|++|+..|++++.++|++..+|+++
T Consensus 191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 270 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRR 270 (338)
T ss_dssp SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4799999999999999998875200000 000114899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY-YAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
|.+|..+|++++|+.+|+++++++|++..++..++.+. ...+..+++.. .|.+++...|.++.
T Consensus 271 g~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~-~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 271 GKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE-MYKGIFKGKDEGGA 334 (338)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCCCCCCC
Confidence 99999999999999999999999999999999999994 55677888888 99999999998764
No 171
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.41 E-value=1.2e-11 Score=98.31 Aligned_cols=104 Identities=32% Similarity=0.427 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ..+++.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|
T Consensus 22 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 22 QGDYDEAIEYYQKALELDPNN----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHCcCc----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 589999999999999998876 7899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 260 (433)
++++|+..+++++..+|+++.++..+|.++...|
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 92 DYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999988765
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.41 E-value=1.2e-11 Score=97.36 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=96.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..+++++...|.+ ..++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHN----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHCCCc----------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 589999999999999999887 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
++++|+..++++++.+|+++.++..++.+..
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999988753
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.40 E-value=3e-13 Score=118.13 Aligned_cols=151 Identities=9% Similarity=0.013 Sum_probs=123.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------cCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL------CGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~ 220 (433)
.|++++|+..++.... +| .....++..+|.++...|++++|+..|++++.+ .+....++.++|.
T Consensus 5 ~g~~~~A~~~~~~~~~-~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HP---------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp --CHHHHHHHHHHHHT-ST---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcC-Ch---------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5899999995554433 22 234889999999999999999999999999994 4445788999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhc---CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC--CC----HHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDI---DPN----YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP--NN----EAVKENI 287 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p--~~----~~~~~~l 287 (433)
++...|++++|+..+++++.+ .++ ...++..+|.++...|++++|+. ++++++.+.+ .+ ..++..+
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ-EYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999999999999998 442 35779999999999999999999 9999997642 22 2346889
Q ss_pred HHHHHHHHHHHHhcccccccC
Q 013948 288 RMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~~~ 308 (433)
|.++...|++++|..++..+.
T Consensus 154 a~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999988876443
No 174
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.39 E-value=2.8e-13 Score=118.29 Aligned_cols=161 Identities=11% Similarity=0.072 Sum_probs=127.3
Q ss_pred HHHccCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcC
Q 013948 188 VMQSQQYSDAIELYSFAIALCG-NNAVYYSNRAAAYTQIHQYAEAVRDCLKSID------IDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 188 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g 260 (433)
++..|++++|.+.++.... +| ....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3568999999996555444 45 5689999999999999999999999999999 44556789999999999999
Q ss_pred CHHHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCccc
Q 013948 261 NYNDAIEKGFKKALQL---DPNN----EAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFT 333 (433)
Q Consensus 261 ~~~~A~~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~a 333 (433)
++++|+. ++++++.+ .+++ ..++.++|.++..+|++++|..++..+..... .
T Consensus 81 ~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------------------~ 139 (203)
T 3gw4_A 81 NWDAARR-CFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ--------------------Q 139 (203)
T ss_dssp CHHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------------H
T ss_pred CHHHHHH-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--------------------h
Confidence 9999999 99999988 4433 45788999999999999999988774331100 0
Q ss_pred ccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 334 MPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 334 l~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
.. ++ .....++..+| .++..+|++++|+..+++++++
T Consensus 140 ~~-~~----~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 140 AD-DQ----VAIACAFRGLG-DLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TT-CH----HHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHH
T ss_pred cc-ch----HHHHHHHHHHH-HHHHHCcCHHHHHHHHHHHHHH
Confidence 11 11 24566789999 9999999999999999999775
No 175
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.38 E-value=4.5e-12 Score=136.20 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=177.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+|++|++++..+....+.. .+...+|.+|.+.+++++ ++.|. ..+ +...+..+|..+...|
T Consensus 1147 lGkyEEAIeyL~mArk~~~e~-----------~Idt~LafaYAKl~rlee-le~fI----~~~-n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1147 SGNWEELVKYLQMARKKARES-----------YVETELIFALAKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred cCCHHHHHHHHHHHHhhcccc-----------cccHHHHHHHHhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHHhcC
Confidence 799999999999999986542 223348999999999885 55542 233 4566778999999999
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+|++|+.+|.++ ..|..+|.++.++|++++|++ +++++ .++.+|...+.++...|++..|..+...
T Consensus 1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE-aarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD-GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred CHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH-HHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 999999999997 489999999999999999999 99998 6679999999999999999999998876
Q ss_pred cCCCccch--hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccc--cCCChhhHHHHHhhhcCCCC--
Q 013948 307 TSSSHYSQ--ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQ--AQPSQSRQGEDSNVSGSDEP-- 378 (433)
Q Consensus 307 ~~~~~~~~--~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~--~~g~~~~A~~~~~~al~l~P-- 378 (433)
....+... ...+|...|.|++|+..+ ++.++| .+...|..+| .++. ..++.-++++.|...+.+.|
T Consensus 1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler-----aH~gmftELa-iLyaKy~peklmEhlk~f~~rini~k~~ 1349 (1630)
T 1xi4_A 1276 IVVHADELEELINYYQDRGYFEELITMLEAALGLER-----AHMGMFTELA-ILYSKFKPQKMREHLELFWSRVNIPKVL 1349 (1630)
T ss_pred hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh-----hHhHHHHHHH-HHHHhCCHHHHHHHHHHHHHhcccchHh
Confidence 44444333 367899999999999999 999999 9999997777 6554 45778899999999988877
Q ss_pred ---Cc-ccccccccccccCCcHHHHHHHHHHHhhc
Q 013948 379 ---GI-RIGGNINLNFGENMPEDITGALRSMMEMF 409 (433)
Q Consensus 379 ---~~-~~~~~~~~~l~~~~~~~~~~a~~~~~~~~ 409 (433)
+. ..+..+.+- ....++..+|+..|++..
T Consensus 1350 r~~e~~~lW~elv~L--Y~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1350 RAAEQAHLWAELVFL--YDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HHHHHHHHHHHHHHH--HHhcccHHHHHHHHHhcc
Confidence 33 222222222 244556667777777664
No 176
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.38 E-value=6.5e-12 Score=102.39 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=97.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 22 GRKYPEAAACYGRAITRNPLV----------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 91 (137)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHhhCcCc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 599999999999999999987 8899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCC
Q 013948 227 QYAEAVRDCLKSIDIDPN-----YSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~ 261 (433)
++++|+..|+++++++|+ +..++..+..+......
T Consensus 92 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 92 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 67777777777655443
No 177
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.37 E-value=1e-11 Score=98.43 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 196 DAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 196 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
+|+..|++++..+|+++.+++++|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+. +|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ-AWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hCCC--CHHHHHHHHHHHHHHHHHH
Q 013948 276 LDPN--NEAVKENIRMAEQKLREER 298 (433)
Q Consensus 276 ~~p~--~~~~~~~l~~~~~~~~~~~ 298 (433)
+.|. +......+...+..+++..
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLARED 106 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcccc
Confidence 9884 5666777777777666644
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.36 E-value=2.7e-11 Score=97.55 Aligned_cols=108 Identities=10% Similarity=-0.010 Sum_probs=96.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 223 (433)
.|++++|+..|++++..+|.+ +....+++.+|.+++..|++++|+..|++++..+|++ +.+++.+|.++.
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNG-------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSS-------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCC-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 589999999999999998876 2234799999999999999999999999999999999 899999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 013948 224 QIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 224 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 261 (433)
.+|++++|+..|+++++..|+++.+...+..+....++
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887776666554443
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.35 E-value=3e-12 Score=123.71 Aligned_cols=121 Identities=16% Similarity=0.131 Sum_probs=108.1
Q ss_pred cchHHHHHHHHHHHHHHHhhcc------ccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSG------AHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 220 (433)
.|++++|+..|++++...+... ......+....++..+|.+++..|++++|+.+|+++++++|+++.+++++|.
T Consensus 236 ~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 315 (370)
T 1ihg_A 236 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 315 (370)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 6999999999999999654420 0000234458899999999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
+|..+|++++|+..|+++++++|++..++..++.++..+++++++..
T Consensus 316 ~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 316 GWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876
No 180
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.2e-12 Score=102.62 Aligned_cols=90 Identities=30% Similarity=0.375 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSR 251 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 251 (433)
+.+++.+|.+++..|++++|+..|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666655 555555
Q ss_pred HHHHHHHcCCHHHHHH
Q 013948 252 LGLAYYAQGNYNDAIE 267 (433)
Q Consensus 252 lg~~~~~~g~~~~A~~ 267 (433)
+|.++..+|+++.|+.
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 5555555555555544
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.34 E-value=3.4e-11 Score=100.15 Aligned_cols=128 Identities=21% Similarity=0.246 Sum_probs=104.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~ 220 (433)
.|++++|+.++++++...+... .......++..+|.++...|++++|+..|++++.+.+.. ..+++++|.
T Consensus 22 ~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 97 (164)
T 3ro3_A 22 LGNFRDAVIAHEQRLLIAKEFG----DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 97 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHhC----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5889999999999999877642 223346788889999999999999999999998876543 568889999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPN------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~ 279 (433)
++...|++++|+.++++++.+.+. ...++..+|.++...|++++|+. ++++++++...
T Consensus 98 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~~~~~ 161 (164)
T 3ro3_A 98 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH-FAEKHLEISRE 161 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH-HHHHHHHHHHH
Confidence 999999999999999999877422 35678889999999999999999 99998877543
No 182
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=9.8e-12 Score=102.40 Aligned_cols=120 Identities=12% Similarity=0.050 Sum_probs=107.7
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 206 ALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY---SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 206 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
..+|.+...++.+|.++...|++++|+..|+++++++|++ ..+++.+|.++...|++++|+. +++++++++|+++.
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET-EASKAIEKDGGDVK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTSCCHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHH-HHHHHHhhCccCHH
Confidence 3467889999999999999999999999999999999998 8999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccc
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
++..+|.++..+|++++|..++.. ++..+| ++..++..++ .+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~--------------------------al~~~p-----~~~~~~~~l~-~~~~ 144 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQR--------------------------CVSLEP-----KNKVFQEALR-NISG 144 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH--------------------------HHHHCS-----SCHHHHHHHH-HHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH--------------------------HHHcCC-----CcHHHHHHHH-HHHh
Confidence 999999999999999999887663 456677 7777777777 5543
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.31 E-value=6.9e-12 Score=104.43 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc---
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY--- 245 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--- 245 (433)
...+.++..+|.++...|++++|+..|.+++.+.+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4457899999999999999999999999999886542 2589999999999999999999999999986543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 246 ---SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN------NEAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 246 ---~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
..++..+|.++...|++++|+. ++++++++.+. ...++..++.++...|++++|..++..+
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAID-YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6789999999999999999999 99999987432 2567889999999999999998887643
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.31 E-value=3e-11 Score=90.80 Aligned_cols=84 Identities=36% Similarity=0.462 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
.+.+++.+|.++...|++++|+..|++++..+|++..+++++|.++...|++++|+..++++++++|+++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcC
Q 013948 257 YAQG 260 (433)
Q Consensus 257 ~~~g 260 (433)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6543
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.31 E-value=1e-11 Score=97.19 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC------HHHH
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN------EAVK 284 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~------~~~~ 284 (433)
++..++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+. +++++++++|++ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ-MCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHhCCCccHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999 999999999999 8899
Q ss_pred HHHHHHHHHHHHHHHhcccccc
Q 013948 285 ENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 285 ~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
..++.++..+|+.+.+...+..
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999999877766665553
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.30 E-value=2.1e-12 Score=100.84 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=95.8
Q ss_pred hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHH
Q 013948 207 LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVK 284 (433)
Q Consensus 207 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~ 284 (433)
++|+++.+++.+|.++...|++++|+..|+++++++|.+..+++.+|.++...|++++|+. +++++++++|. +..++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD-CYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTSCCTTCHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCcccchHHHH
Confidence 3688899999999999999999999999999999999999999999999999999999999 99999999999 99999
Q ss_pred HHHHHHHHHH-HHHHHhcccccccC
Q 013948 285 ENIRMAEQKL-REERQRTGWDQTTS 308 (433)
Q Consensus 285 ~~l~~~~~~~-~~~~~a~~~~~~~~ 308 (433)
..++.++..+ |++++|..++..+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999 99999988877544
No 187
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.27 E-value=4.4e-11 Score=95.90 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-------AVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la 219 (433)
.|++++|+.+|++++...|.+ ..+++.+|.++...|++++|+.+|.+++...|++ ..+++.+|
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTN----------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCcc----------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 589999999999999998887 8899999999999999999999999999999887 89999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 260 (433)
.++...|++++|+.+|+++++..| ++..+..++.+....+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 6888888888876554
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.27 E-value=3.7e-11 Score=90.31 Aligned_cols=85 Identities=44% Similarity=0.681 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013948 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRM 289 (433)
Q Consensus 210 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~ 289 (433)
.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+. +|+++++++|+++.++..++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-YYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcCCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHH
Q 013948 290 AEQKLR 295 (433)
Q Consensus 290 ~~~~~~ 295 (433)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 987653
No 189
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.26 E-value=1.2e-12 Score=126.85 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=77.6
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 136 YFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 136 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
.|...++.+.+.|.|++|+.+|.++ ..|..+|.++...|+|++|++.|.++ +++..|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~W 180 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV------------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTW 180 (449)
T ss_dssp -------------CTTTHHHHHHHT------------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhH
Confidence 3444455555566666666666643 23666666666666666666666666 356666
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK-- 293 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~-- 293 (433)
.....++...|+++.|..+..+ +...|+. ...+..+|.+.|++++|+. .+++++.+++....++..++.++.+
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~-lLe~aL~le~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELIT-MLEAALGLERAHMGMFTELAILYSKFK 255 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHH-HHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence 6666666666666666555554 2233333 3346666667777777777 7777777777677777666666553
Q ss_pred HHHHHHhccc
Q 013948 294 LREERQRTGW 303 (433)
Q Consensus 294 ~~~~~~a~~~ 303 (433)
.++..+..+.
T Consensus 256 p~k~~ehl~~ 265 (449)
T 1b89_A 256 PQKMREHLEL 265 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=8.7e-11 Score=115.14 Aligned_cols=208 Identities=10% Similarity=0.002 Sum_probs=154.0
Q ss_pred CchhHHHHHHHHHHhhcCCCCCCCCCCCCchHHHHhhhhhHhhhhcccCCCCCCCCcccCCCccchhhhcccCcccccCC
Q 013948 34 DLEGLEVARECLTEVFKLDSPSADGQRKPDSLIDIFNSQQASDALGIKSDNAPSSSSAQNMDAKFSEASKSMGEDWTEEP 113 (433)
Q Consensus 34 ~~~~~e~A~~~~~kAl~ldP~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (433)
..+++++|++.|.++++.+|+..+.....+.+.......+.+.
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al------------------------------------- 58 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSI------------------------------------- 58 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHH-------------------------------------
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHH-------------------------------------
Confidence 3567999999999999999999865554433333322222221
Q ss_pred CCCCCChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC
Q 013948 114 DSTGVSKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ 193 (433)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 193 (433)
..+...+.. .|++++|++++++++...+... .......+...+|.++...|+
T Consensus 59 -----------~~l~~~y~~-------------~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~ 110 (434)
T 4b4t_Q 59 -----------LELGQLYVT-------------MGAKDKLREFIPHSTEYMMQFA----KSKTVKVLKTLIEKFEQVPDS 110 (434)
T ss_dssp -----------HHHHHHHHH-------------HTCHHHHHHHHHHTHHHHHTSC----HHHHHHHHHHHHHHHCSCCSC
T ss_pred -----------HHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhCCCC
Confidence 122222222 6999999999999999877642 112234566778888889999
Q ss_pred HHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCC
Q 013948 194 YSDAIELYSFAIALCGN------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------DPNYSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~ 261 (433)
+++|+.++++++...+. ...++.++|.++...|+|.+|+..+++++.. .+....++..+|.+|...|+
T Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
T 4b4t_Q 111 LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN 190 (434)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc
Confidence 99999999999876432 3678999999999999999999999999876 34457899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCC---C----HHHHHHHHHHHHHHHHHHHhccccccc
Q 013948 262 YNDAIEKGFKKALQLDPN---N----EAVKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 262 ~~~A~~~~~~~al~~~p~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
|++|.. .+++++.+.+. . ...+..+|.++...+++.+|..++..+
T Consensus 191 ~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 191 LAKSKA-SLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999 99999977432 2 234555666666667777776665433
No 191
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=3e-11 Score=112.07 Aligned_cols=188 Identities=9% Similarity=-0.068 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhcHHH
Q 013948 153 ASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--NNAVYYSNRAAAYTQIHQYAE 230 (433)
Q Consensus 153 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~ 230 (433)
|+..+++.+...+.. ..+++.+|.++...|++++|++.+.+++..+| ++..++..++.++..+|+.+.
T Consensus 85 a~~~l~~l~~~~~~~----------~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDKQNS----------PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTSCCC----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCCCC----------cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 567777766543222 45567999999999999999999999999887 789999999999999999999
Q ss_pred HHHHHHHHHhcCCC------cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHh
Q 013948 231 AVRDCLKSIDIDPN------YSKAYSRLGLAYYAQG--NYNDAIEKGFKKALQLDPN--NEAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 231 A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g--~~~~A~~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a 300 (433)
|.+.+++..+.+|+ .....+.-|.+....| ++.+|.. .|+++.+..|+ .+..+.+ ++..+|++++|
T Consensus 155 A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~-~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA 230 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFY-YYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHH-HHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred HHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence 99999999999993 3334444455576667 9999999 99999888886 3334444 89999999999
Q ss_pred cccccccCCCccchhhhhhhcCCCCCCCCCcccc-cC---CCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 301 TGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTM-PF---NTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al-~~---~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
....+.+....+ .+ .. +| +++.++.+++ .+...+|+ +|.+.++++.++
T Consensus 231 e~~L~~l~~~~p--------------------~~~~k~~~~p-----~~~~~LaN~i-~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 231 QGIVELLLSDYY--------------------SVEQKENAVL-----YKPTFLANQI-TLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHSHHH--------------------HTTTCHHHHS-----SHHHHHHHHH-HHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--------------------cccccccCCC-----CCHHHHHHHH-HHHHHhCh--HHHHHHHHHHHh
Confidence 888763221100 00 01 48 8999999998 77778887 899999999999
Q ss_pred CCCccc
Q 013948 377 EPGIRI 382 (433)
Q Consensus 377 ~P~~~~ 382 (433)
+|+..+
T Consensus 283 ~P~hp~ 288 (310)
T 3mv2_B 283 DHEHAF 288 (310)
T ss_dssp TCCCHH
T ss_pred CCCChH
Confidence 999633
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.24 E-value=5.2e-11 Score=116.75 Aligned_cols=204 Identities=11% Similarity=0.032 Sum_probs=161.4
Q ss_pred cchHHHHHHHHHHHHHHHhhcccccc-------chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC------HH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAY-------NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN------AV 213 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~-------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 213 (433)
.|++++|++.|.+++...|....... .......++..+|.+|...|++++|++.|.+++...+.. ..
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 48999999999999998877643211 123445678999999999999999999999999886654 24
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------CCCCH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDID------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL------DPNNE 281 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~------~p~~~ 281 (433)
+...+|.++...|++++|+..+++++... +....++..+|.++...|+|++|+. .+++++.. .+...
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA-LINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH-HHHHHHHHHHhcccchhHH
Confidence 56778888889999999999999998763 3347889999999999999999999 99998865 23346
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC
Q 013948 282 AVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP 361 (433)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g 361 (433)
.++..++.++..+|++.+|...+.++..... .+...| ......+..+| .++...|
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--------------------~~~~~~----~~~~~~~~~~g-~~~~~~~ 230 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAAN--------------------SIYCPT----QTVAELDLMSG-ILHCEDK 230 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------------------HSCCCH----HHHHHHHHHHH-HHTTSSS
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh--------------------cCCCch----HHHHHHHHHHH-HHHHHHH
Confidence 7899999999999999999988775432110 122222 13456777888 9999999
Q ss_pred ChhhHHHHHhhhcCC
Q 013948 362 SQSRQGEDSNVSGSD 376 (433)
Q Consensus 362 ~~~~A~~~~~~al~l 376 (433)
++++|..+|..+++.
T Consensus 231 ~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 231 DYKTAFSYFFESFES 245 (434)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999998764
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.22 E-value=7.8e-11 Score=93.22 Aligned_cols=99 Identities=8% Similarity=0.023 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHH
Q 013948 152 KASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEA 231 (433)
Q Consensus 152 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 231 (433)
+|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|++..+|+++|.++...|++++|
T Consensus 3 ~a~~~~~~al~~~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 3 AITERLEAMLAQGTDN----------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CHHHHHHHHHTTTCCC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 5788999999998887 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC--cHHHHHHHHHHHHHcC
Q 013948 232 VRDCLKSIDIDPN--YSKAYSRLGLAYYAQG 260 (433)
Q Consensus 232 ~~~~~~al~~~p~--~~~~~~~lg~~~~~~g 260 (433)
+..|+++++++|. +......+...+..++
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 9999999999875 3444445554444433
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.20 E-value=1.3e-10 Score=89.83 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=71.4
Q ss_pred hcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC--CHHHH
Q 013948 207 LCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN--NEAVK 284 (433)
Q Consensus 207 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~--~~~~~ 284 (433)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+. .|++++++.|. +....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~-~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID-TYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHSCHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhhhcCCchhHH
Confidence 4788999999999999999999999999999999999999999999999999999999999 99999988764 45555
Q ss_pred HHHHHHHHHHH
Q 013948 285 ENIRMAEQKLR 295 (433)
Q Consensus 285 ~~l~~~~~~~~ 295 (433)
..+...+...+
T Consensus 81 ~~l~~~l~~~~ 91 (100)
T 3ma5_A 81 SELQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcc
Confidence 55555554443
No 195
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.19 E-value=4.2e-11 Score=91.92 Aligned_cols=90 Identities=11% Similarity=0.149 Sum_probs=73.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAV-YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG 260 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 260 (433)
+.+|.+++..|++++|+..|++++..+|+++. +++++|.++..+|++++|+..|+++++++|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45678888888888888888888888888888 88888888888888888888888888888888877644 6
Q ss_pred CHHHHHHHHHHHHHhhCCCC
Q 013948 261 NYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 261 ~~~~A~~~~~~~al~~~p~~ 280 (433)
.+.+++. .|++++..+|++
T Consensus 76 ~~~~a~~-~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILN-FYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHH-HHCCTTHHHHCC
T ss_pred HHHHHHH-HHHHHhccCccc
Confidence 6677777 777777776654
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.15 E-value=9.9e-10 Score=90.24 Aligned_cols=121 Identities=19% Similarity=0.113 Sum_probs=106.3
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQ-- 224 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 224 (433)
.+++++|+.+|+++.+.... .+. +|.++...+.+++|+.+|+++.+. .++.+++++|.+|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM------------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT------------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHcCCCH------------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 46899999999999987532 233 999999999999999999999986 689999999999999
Q ss_pred --hhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013948 225 --IHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAIEKGFKKALQLDPNNEAVKENIR 288 (433)
Q Consensus 225 --~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~al~~~p~~~~~~~~l~ 288 (433)
.+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+. +|+++.+. .++.+...|+
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~-~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVK-TFEKACRL--GSEDACGILN 136 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH-HHHHHHHT--TCHHHHHHC-
T ss_pred CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHH-HHHHHHHC--CCHHHHHHHh
Confidence 89999999999999987 789999999999999 999999999 99999987 4566665554
No 197
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.08 E-value=3e-09 Score=109.97 Aligned_cols=193 Identities=8% Similarity=-0.055 Sum_probs=159.3
Q ss_pred chHHHHH-HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-----------CC-----
Q 013948 148 SQVDKAS-RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-----------GN----- 210 (433)
Q Consensus 148 g~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------p~----- 210 (433)
|+.++|. .+|++++...|.+ ...|..++......|+++.|...|++++..- |.
T Consensus 357 ~~~~~a~r~il~rAi~~~P~s----------~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCIPNS----------AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp SCCTTHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence 4556786 9999999998876 7788899999999999999999999999752 53
Q ss_pred ------CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhCCCCHH
Q 013948 211 ------NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPNYSKAYSRLGLAYYAQG-NYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 211 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~~al~~~p~~~~ 282 (433)
...+|...+.+....|..+.|...|.+|++. .+.....|...|.+-...+ +++.|.. .|+++++..|+++.
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~-ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACK-VLELGLKYFATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHH-HHHHHHHHHTTCHH
T ss_pred hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHCCCchH
Confidence 3457999999999999999999999999998 5455678888888877765 4999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCC
Q 013948 283 VKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPS 362 (433)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~ 362 (433)
.|..++......|+.+.|...++.+. ...| .+......|.... ..-...|+
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal--------------------------~~~~--~~~~~~~lw~~~~-~fE~~~G~ 556 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSI--------------------------DKIS--DSHLLKMIFQKVI-FFESKVGS 556 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHT--------------------------TTSS--STTHHHHHHHHHH-HHHHHTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH--------------------------HhcC--CHHHHHHHHHHHH-HHHHHcCC
Confidence 99888888888888888888777433 3333 0124556777777 77778899
Q ss_pred hhhHHHHHhhhcCCCCCc
Q 013948 363 QSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 363 ~~~A~~~~~~al~l~P~~ 380 (433)
.+.+...++++.+..|++
T Consensus 557 ~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp SHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999999997
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.07 E-value=7.3e-10 Score=85.46 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc--HHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY--SKAYSRLGLA 255 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~ 255 (433)
+.+++.+|.+++..|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++++++.|.. ......+..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~ 86 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA 86 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999987643 3344444444
Q ss_pred HHH
Q 013948 256 YYA 258 (433)
Q Consensus 256 ~~~ 258 (433)
+..
T Consensus 87 l~~ 89 (100)
T 3ma5_A 87 KLK 89 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 199
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=3.9e-09 Score=97.93 Aligned_cols=147 Identities=10% Similarity=-0.006 Sum_probs=116.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-----C-HHHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN-----N-AVYYSNRAA 220 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~-~~~~~~la~ 220 (433)
.|++++|+.++.++|...|. ....+++..++.++...|+.+.|.+.+++..+.+|+ + ..+...-|+
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~--------~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~ 184 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEA--------EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESY 184 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCS--------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCC--------cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHH
Confidence 58999999999999887651 123889999999999999999999999999999983 3 333333355
Q ss_pred HHHHhh--cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----------CCCCHHHHHHHH
Q 013948 221 AYTQIH--QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL----------DPNNEAVKENIR 288 (433)
Q Consensus 221 ~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~----------~p~~~~~~~~l~ 288 (433)
+.+..| ++.+|+..|+++....|+.......+. ++..+|++++|.. .++.+++. +|+++.++.++.
T Consensus 185 v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~-~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i 262 (310)
T 3mv2_B 185 IKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG-IVELLLSDYYSVEQKENAVLYKPTFLANQI 262 (310)
T ss_dssp HHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH-HHHHHHSHHHHTTTCHHHHSSHHHHHHHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH-HHHHHHHhcccccccccCCCCCHHHHHHHH
Confidence 577777 999999999999998887333333333 8999999999999 99988876 588999999998
Q ss_pred HHHHHHHHHHHhccccc
Q 013948 289 MAEQKLREERQRTGWDQ 305 (433)
Q Consensus 289 ~~~~~~~~~~~a~~~~~ 305 (433)
.+...+|+ .+.++..
T Consensus 263 ~l~~~lgk--~a~~l~~ 277 (310)
T 3mv2_B 263 TLALMQGL--DTEDLTN 277 (310)
T ss_dssp HHHHHTTC--TTHHHHH
T ss_pred HHHHHhCh--HHHHHHH
Confidence 88888886 4444433
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.05 E-value=2e-09 Score=107.24 Aligned_cols=128 Identities=9% Similarity=0.006 Sum_probs=110.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----CGNN---AVYYSN 217 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~ 217 (433)
..|+|++|+.++++++++.... .+..++..+.++.++|.+|..+|+|++|+.++++++.+ .|++ ...+++
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~--lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPV--FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTT--BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3799999999999999986543 33456788999999999999999999999999999976 3444 578999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 218 RAAAYTQIHQYAEAVRDCLKSIDI-----DPNYS---KAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 218 la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+|.+|..+|++++|+..|++|+++ .|+++ ....+++.++..++.|.+|.. .|.++.+-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~-~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF-MYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999999976 56664 566789999999999999999 99888653
No 201
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.99 E-value=3.1e-09 Score=109.87 Aligned_cols=219 Identities=12% Similarity=0.056 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHhhcH
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI-ELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 228 (433)
.......|+++|...|.. +..|+..+..+...|+.++|+ ..|.+|+..+|.+..+|+.++......|++
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~----------~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFA----------PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp HHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 445667899999998887 889999999998899988997 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-----------CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CCCCHHHHH
Q 013948 229 AEAVRDCLKSIDI-----------DPN-----------YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-DPNNEAVKE 285 (433)
Q Consensus 229 ~~A~~~~~~al~~-----------~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-~p~~~~~~~ 285 (433)
+.|...|++++.. .|. ...+|...+....+.|+.+.|.. .|.+|++. .+....++.
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~-vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK-IFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhcCCCChHHHH
Confidence 9999999999875 253 45678888888888999999999 99999987 444455665
Q ss_pred HHHHHHHHHHH-HHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChh
Q 013948 286 NIRMAEQKLRE-ERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQS 364 (433)
Q Consensus 286 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~ 364 (433)
..+.+....+. .+.|...+.. +++..| +.+..|...+ ......|+.+
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~--------------------------~Lk~~p-----~~~~~w~~y~-~fe~~~~~~~ 521 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLEL--------------------------GLKYFA-----TDGEYINKYL-DFLIYVNEES 521 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHH--------------------------HHHHHT-----TCHHHHHHHH-HHHHHHTCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH--------------------------HHHHCC-----CchHHHHHHH-HHHHhCCCHH
Confidence 54444433322 3444333321 566778 8888888888 8888889999
Q ss_pred hHHHHHhhhcCCCCC--c-ccccccccccc--cCCcHHHHHHHHHHHhhcCC
Q 013948 365 RQGEDSNVSGSDEPG--I-RIGGNINLNFG--ENMPEDITGALRSMMEMFSG 411 (433)
Q Consensus 365 ~A~~~~~~al~l~P~--~-~~~~~~~~~l~--~~~~~~~~~a~~~~~~~~~~ 411 (433)
.|...|++++...|+ . ..+-.....+. ..+.+.+....+++.+.+..
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999884 2 11111111221 34455566666666655543
No 202
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.98 E-value=8.9e-10 Score=104.01 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 246 (433)
+.++..++..+...|++++|+..+++|+.++| +...|..+|.++...|++++|++.|.+|+.++|..+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 66666666666666777777777777777775 356666777777777777777777777777777664
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.97 E-value=4.5e-09 Score=80.34 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 215 YSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK-AYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 215 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
.+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+. +|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN-NYQSAIELNPDSPALQAR 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCcHHHHHH
Confidence 367899999999999999999999999999999 99999999999999999999 999999999999988744
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.95 E-value=5.3e-09 Score=104.16 Aligned_cols=127 Identities=17% Similarity=0.137 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhc-----CCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-----CCCc-
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALC-----GNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-----DPNY- 245 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~- 245 (433)
.....+..+..+|+|++|+..|++++++. |++ ...+.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 34445556778999999999999999873 333 578999999999999999999999999977 3444
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHHHHHHHhccccccc
Q 013948 246 --SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-----DPNNEA---VKENIRMAEQKLREERQRTGWDQTT 307 (433)
Q Consensus 246 --~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~ 307 (433)
...+.+||.+|..+|+|++|+. .|++|+++ .|+++. ....++.++..++.+.+|+..+..+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~-~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHG-MICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999 99999975 466654 5567888899999999988876654
No 205
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.92 E-value=1.6e-08 Score=82.98 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 193 QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH---QYAEAVRDCLKSIDID-P-NYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 193 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
....+.+.|.+.+..++.+..+.+++|+++.+.+ +..+++..++.+++.+ | ++.+++|.+|..++++|+|++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4566778888888889999999999999999988 7779999999999999 7 678999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013948 268 KGFKKALQLDPNNEAVKENIRMAEQKLR 295 (433)
Q Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~~ 295 (433)
+++++|+++|++..+......+.....
T Consensus 93 -y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 93 -YVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp -HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999888777765553
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.91 E-value=1.8e-08 Score=95.10 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=100.8
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccC-------HHHHH-HHHH--HHHHhcCCCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQ-------YSDAI-ELYS--FAIALCGNNAVYYS 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~-------~~~A~-~~~~--~al~~~p~~~~~~~ 216 (433)
..++.+|+.+|+++++++|.. +.++..++.++..... ...++ ..+. .++..+|.++.++.
T Consensus 212 ~~~~~~A~~l~e~Al~lDP~~----------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~ 281 (372)
T 3ly7_A 212 DKSLNRASELLGEIVQSSPEF----------TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQ 281 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHH
Confidence 467899999999999999998 7777777776642111 11111 1222 23356799999999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEA 282 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~ 282 (433)
.+|.++...|++++|+..+++++.++|+ ..+|..+|.++...|++++|++ .|++|+.++|..+.
T Consensus 282 alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e-~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 282 IKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAAD-AYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSCSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCcCh
Confidence 9999999999999999999999999975 6788999999999999999999 99999999998764
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.85 E-value=2.6e-08 Score=75.50 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=64.9
Q ss_pred cCCCHHHHHHHHHHHHHhhc---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 208 CGNNAVYYSNRAAAYTQIHQ---YAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 208 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|.+++..|+|++|+. +|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~-~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAID-TWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCC
Confidence 68889999999999987766 6999999999999999999999999999999999999999 999999998884
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.76 E-value=2.9e-08 Score=81.34 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=97.1
Q ss_pred ccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHH
Q 013948 191 SQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYA----QGNYNDAI 266 (433)
Q Consensus 191 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~ 266 (433)
.+++++|+..|+++.+.....+ . +|.+|...+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3578999999999998874444 3 999999999999999999999997 789999999999999 89999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhcccccccC
Q 013948 267 EKGFKKALQLDPNNEAVKENIRMAEQK----LREERQRTGWDQTTS 308 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 308 (433)
. +|+++.+. .++.+..+||.+|.. .++.++|..+++++.
T Consensus 82 ~-~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 82 Q-YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp H-HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred H-HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 9 99999987 789999999999998 788999998887554
No 209
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.71 E-value=2.6e-07 Score=71.55 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-------PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
+.-++.+|..++..++|..|+.+|++|++.. +..+.++..+|.+++++|+++.|+. .++++++++|++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~-~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL-LTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHH-HHHHHHhcCCCCHHHH
Confidence 3445556666666666666666666666542 3445666777777777777777777 7777777777777666
Q ss_pred HHHH
Q 013948 285 ENIR 288 (433)
Q Consensus 285 ~~l~ 288 (433)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6665
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=1.5e-07 Score=77.23 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=87.4
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQ---QYSDAIELYSFAIALC-G-NNAVYYSNRAA 220 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~ 220 (433)
.......+...|.+.++..+.+ .++.+.+|.++...+ ++.+++..++..++.+ | +..+++|++|.
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~~~----------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv 79 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGSVS----------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 79 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCC----------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCc----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence 3577888888899888866654 889999999999988 7779999999999998 7 56899999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
.++++|+|++|..+++++++++|++..+....-.+
T Consensus 80 ~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 80 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999999999999999998877655444
No 211
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=8e-06 Score=81.55 Aligned_cols=205 Identities=10% Similarity=0.044 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA-------- 221 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-------- 221 (433)
.+.....|++++...|.. +..|+..+..+...|+.++|...|++|+.. |.+...|+..+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~----------~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~ 263 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYA----------EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYG 263 (493)
T ss_dssp HHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHH
T ss_pred HHHHHHHHHHHHHcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHH
Confidence 566778999999998877 889999999999999999999999999999 9987666554443
Q ss_pred --------------------------------HHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHH
Q 013948 222 --------------------------------YTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQG-NYNDAIEK 268 (433)
Q Consensus 222 --------------------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~ 268 (433)
..+.+..+.|...|.+| ...+.....|...|.+-+..+ +.+.|..
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~- 341 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYN- 341 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHH-
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHH-
Confidence 22345566666666666 322234455555555555444 4667777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHH
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASM 348 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a 348 (433)
.|+.+++..|+++..|..++......|+.+.+...+.. + + .....
T Consensus 342 ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er--------------------------~----~-----k~~~l 386 (493)
T 2uy1_A 342 IFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKR--------------------------L----E-----KTSRM 386 (493)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH--------------------------S----C-----CBHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------H----H-----HHHHH
Confidence 77777776666666655555544555555544444331 1 2 22344
Q ss_pred HHHHhhcccccCCChhhHHHHHhhhcC-------CCCCcccccccccccccCCcHHHHHHHHHHHhhcC
Q 013948 349 LMNMASNMPQAQPSQSRQGEDSNVSGS-------DEPGIRIGGNINLNFGENMPEDITGALRSMMEMFS 410 (433)
Q Consensus 349 ~~~la~~~~~~~g~~~~A~~~~~~al~-------l~P~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~ 410 (433)
|.... ..-...|+.+.+...+++++. .+|. .++-. ..+.|...+.+..+..+++
T Consensus 387 w~~~~-~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~-----~~~~~--~~~fe~~~g~l~~~~~~~~ 447 (493)
T 2uy1_A 387 WDSMI-EYEFMVGSMELFRELVDQKMDAIKADAILPPL-----PPREH--NVQMEGILGRYHCFLDSFN 447 (493)
T ss_dssp HHHHH-HHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCC-----CCC----CCCCCHHHHHHHHHHHHHC
T ss_pred HHHHH-HHHHHCCCHHHHHHHHHHHHHHhcccccCCcc-----ccccc--HHHHHHHhhhHHHHHHHhh
Confidence 44444 444455888888888888764 1222 11111 2455555566666666653
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.66 E-value=2.3e-07 Score=71.89 Aligned_cols=77 Identities=17% Similarity=0.069 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALC-------GNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYS 250 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 250 (433)
+...+.+|..++..++|..|+..|++|++.. +..+.++..+|.++.++|+++.|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 5678899999999999999999999999874 235789999999999999999999999999999999999988
Q ss_pred HHHH
Q 013948 251 RLGL 254 (433)
Q Consensus 251 ~lg~ 254 (433)
+++.
T Consensus 85 n~~~ 88 (104)
T 2v5f_A 85 NLKY 88 (104)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 8773
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.65 E-value=1.3e-07 Score=71.55 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH
Q 013948 178 AEIFKCQGNRVMQSQQ---YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 246 (433)
+..+..+|.+++..++ .++|...+++++.++|+++.+++.+|.++++.|+|++|+.+++++++.+|..+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 8899999999976665 79999999999999999999999999999999999999999999999999853
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.62 E-value=2.7e-07 Score=90.31 Aligned_cols=100 Identities=11% Similarity=0.031 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----CGNN---AVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l 218 (433)
.|+|++|+..+++++.+.... .+..++..+..+.++|.+|..+|+|++|+.++++++.+ .|++ ...++++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~--lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSV--FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTT--BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCc--cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 478899999999999876442 23456778888999999999999999999999999876 2333 5678889
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc-----CCCcHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDI-----DPNYSKA 248 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 248 (433)
|.+|..+|++++|+..|++|+++ .|+++..
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 99999999999999999988876 5666644
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.58 E-value=6.1e-07 Score=87.84 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=81.7
Q ss_pred HHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-----CCC---cHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIAL-----CGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-----DPN---YSKAYSRL 252 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~l 252 (433)
...|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|+ -...+.+|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4568999999999999986 3444 567999999999999999999999999977 344 45679999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhh-----CCCCHHHHH
Q 013948 253 GLAYYAQGNYNDAIEKGFKKALQL-----DPNNEAVKE 285 (433)
Q Consensus 253 g~~~~~~g~~~~A~~~~~~~al~~-----~p~~~~~~~ 285 (433)
|.+|..+|+|++|+. .|++|+++ .|+++.+..
T Consensus 389 a~~~~~qg~~~eA~~-~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 389 GRLYMGLENKAAGEK-ALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHhccCHHHHHH-HHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999 99999975 577776543
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.58 E-value=8.5e-07 Score=80.44 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHH-----cc------CHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh-----hcHHHHHHHHH
Q 013948 175 KNLAEIFKCQGNRVMQ-----SQ------QYSDAIELYSFAIALCGN--NAVYYSNRAAAYTQI-----HQYAEAVRDCL 236 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~-----~~------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~ 236 (433)
+...+.++..|.+... .| ....|...++++++++|+ +..+|..+|.+|... |+.++|..+|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 3346666665555432 23 357899999999999999 677999999999995 99999999999
Q ss_pred HHHhcCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCCCC
Q 013948 237 KSIDIDPNY-SKAYSRLGLAYYA-QGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 237 ~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~~al~~~p~~ 280 (433)
++++++|+. ..+++..|..+.. .|++++|.. ++++++..+|..
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~-~L~kAL~a~p~~ 273 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDE-ALDRALAIDPES 273 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH-HHHHHHHCCGGG
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH-HHHHHHcCCCCC
Confidence 999999975 9999999999988 499999999 999999988763
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.53 E-value=4.3e-07 Score=89.00 Aligned_cols=108 Identities=9% Similarity=0.111 Sum_probs=87.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-----CCCc---HHH
Q 013948 185 GNRVMQSQQYSDAIELYSFAIAL-----CGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-----DPNY---SKA 248 (433)
Q Consensus 185 g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~ 248 (433)
...+..+|+|++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34466789999999999999976 3444 578999999999999999999999999976 3444 567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh-----CCCCHHHH---HHHHHHHHH
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQL-----DPNNEAVK---ENIRMAEQK 293 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~-----~p~~~~~~---~~l~~~~~~ 293 (433)
+++||.+|..+|++++|+. .|++|+++ .|+++.+. .+|+.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~-~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMK-NLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 8999999999999999999 99999975 56766544 445555443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.50 E-value=5.1e-07 Score=88.47 Aligned_cols=110 Identities=9% Similarity=0.028 Sum_probs=89.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----cCCC---HHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----CGNN---AVYYSNR 218 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~l 218 (433)
.|++++|+..+++++.+.... .+..++..+..+.++|.+|..+|+|++|+.++++++.+ .|++ ...++++
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~--lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSER--LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCC--CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCc--CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 589999999999999864322 23456778999999999999999999999999999976 2444 5679999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc-----CCCcHH---HHHHHHHHHHH
Q 013948 219 AAAYTQIHQYAEAVRDCLKSIDI-----DPNYSK---AYSRLGLAYYA 258 (433)
Q Consensus 219 a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~ 258 (433)
|.+|..+|++++|+..|++|+++ .|+++. ++.+|+.+...
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999976 577764 44556665544
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.44 E-value=3.3e-06 Score=66.74 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=88.2
Q ss_pred cCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHH
Q 013948 192 QQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAE---AVRDCLKSIDID-P-NYSKAYSRLGLAYYAQGNYNDAI 266 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~ 266 (433)
.....+.+.|.+.+..++....+.+++|+++.+..+... ++..++..++.+ | ..-+++|.+|..++++|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345567777888888888899999999999999887766 999999999987 5 57799999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013948 267 EKGFKKALQLDPNNEAVKENIRMAEQKL 294 (433)
Q Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (433)
. +++..|++.|++..+......+..++
T Consensus 95 ~-~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 95 K-YVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp H-HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9 99999999999999887776665443
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.27 E-value=1e-05 Score=73.44 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=84.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcCCC-HHHH
Q 013948 142 DGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQ-----SQQYSDAIELYSFAIALCGNN-AVYY 215 (433)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~-----~~~~~~A~~~~~~al~~~p~~-~~~~ 215 (433)
......+...+|...++++++++|+. ....+|..+|..|.. -|+.++|..+|++|++++|+. ...+
T Consensus 171 gg~~Al~~l~~A~a~lerAleLDP~~--------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~ 242 (301)
T 3u64_A 171 LGSALPDTVHAAVMMLERACDLWPSY--------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHH 242 (301)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCTTH--------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHH
T ss_pred CChHHHHhHHHHHHHHHHHHHhCCCc--------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHH
Confidence 33445688999999999999999983 126699999999998 499999999999999999975 9999
Q ss_pred HHHHHHHHH-hhcHHHHHHHHHHHHhcCCCc
Q 013948 216 SNRAAAYTQ-IHQYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 216 ~~la~~~~~-~~~~~~A~~~~~~al~~~p~~ 245 (433)
+.+|..+.. .|++++|..++++++..+|..
T Consensus 243 v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 243 ITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999988 599999999999999998874
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.01 E-value=7.5e-05 Score=58.94 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=81.2
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhc-C-CCHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSD---AIELYSFAIALC-G-NNAVYYSNRAAAY 222 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~ 222 (433)
..+..+...|.+.+...+.. ..+.+.+|.++....+... +|..++..+..+ | ....++|.+|..+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s----------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVS----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCC----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCc----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 45667777777777755443 7889999999998887666 999999988876 4 4678999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 013948 223 TQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLA 255 (433)
Q Consensus 223 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 255 (433)
+++|+|++|..+++.+|+..|+|..+......+
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999998877655444
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.90 E-value=0.00022 Score=57.61 Aligned_cols=105 Identities=14% Similarity=0.010 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHccCH------HHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 178 AEIFKCQGNRVMQSQQY------SDAIELYSFAIALCGNN--------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
.+.|+.........|+. ++-++.|++|+..-|.. ..+|...|.. ...++.++|.+.|+.++++..
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH
Confidence 88899888888888998 89999999999987753 4567777755 677999999999999999988
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 244 NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 244 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
..+.+|...|..-.++|+...|.. .+.+++.+.|...+..
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARk-ILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQ-LLQKAVERGAVPLEML 131 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHH-HHHHHhccCCCcHHHH
Confidence 899999999999999999999999 9999999999876543
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.87 E-value=0.00033 Score=57.79 Aligned_cols=140 Identities=8% Similarity=0.083 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHH
Q 013948 123 LFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYS 202 (433)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 202 (433)
++++....+.. |.|+.|+-....++.+...+. ....+.....++..+|+.++..++|..|...|+
T Consensus 23 l~dqik~L~d~--------------~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~ 87 (167)
T 3ffl_A 23 VIDHVRDMAAA--------------GLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYT 87 (167)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--------------hhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45566666655 899999999999888865442 122334557889999999999999999999999
Q ss_pred HHHHhcC---CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 013948 203 FAIALCG---NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 203 ~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~ 279 (433)
+||.... ........++. ...+. ....+ +...++.|.++.||..++++++|+. .++.. ...-.
T Consensus 88 qALq~~k~l~k~~s~~~~~~~----~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~-~Le~I-p~k~R 153 (167)
T 3ffl_A 88 MALQQKKALSKTSKVRPSTGN----SASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIA-ILDGI-PSRQR 153 (167)
T ss_dssp HHHHHHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHH-HHHTS-CGGGC
T ss_pred HHHHHHHHHhcCCCccccccc----cCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHH-HHhcC-Cchhc
Confidence 9987642 12211111100 00000 01112 3455677777777777777777777 54432 11223
Q ss_pred CHHHHHHHHHHH
Q 013948 280 NEAVKENIRMAE 291 (433)
Q Consensus 280 ~~~~~~~l~~~~ 291 (433)
.+.+...||+.|
T Consensus 154 t~kvnm~LakLy 165 (167)
T 3ffl_A 154 TPKINMLLANLY 165 (167)
T ss_dssp CHHHHHHHHHHC
T ss_pred CHHHHHHHHHHh
Confidence 555555555544
No 224
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.82 E-value=0.00074 Score=67.26 Aligned_cols=168 Identities=8% Similarity=-0.091 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 194 YSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 194 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
.......|++++...|..+.+|+..+..+...|+.++|...|++|+.. |.+...|+..+... ..+ +... .+..+
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~-~l~~~ 268 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYG-DLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHH-HHHHH
Confidence 455778999999999999999999999999999999999999999999 99887777554431 111 1122 22221
Q ss_pred HhhC----------CCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh-----hhh-hhcCCCCCCCCCcc--ccc
Q 013948 274 LQLD----------PNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQE-----SNQ-STGGFRSHGTPPSF--TMP 335 (433)
Q Consensus 274 l~~~----------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~A~~~~--al~ 335 (433)
.... +....+|...+......+..+.|...+..+..+..... +.+ +...++++.|...| ++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 1100 11235566666666666667777666655521111111 111 11224677788888 777
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
..| +.+..+...+ ......|+.+.|...|+++
T Consensus 349 ~~~-----~~~~~~~~yi-d~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 349 KHP-----DSTLLKEEFF-LFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HCT-----TCHHHHHHHH-HHHHHHTCHHHHHHHHHHS
T ss_pred HCC-----CCHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 778 7777777777 7778889999999999998
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.80 E-value=0.0004 Score=54.95 Aligned_cols=85 Identities=16% Similarity=0.111 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHhhcH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHH
Q 013948 211 NAVYYSNRAAAYTQIHQY---AEAVRDCLKSIDIDPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKEN 286 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~ 286 (433)
.+.+.+++|+++.+..+. .+++..+...++.+|. ..++++.+|..++++|+|++|.. +.+.+|++.|+|..+...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~-y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR-YVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhhCCCCHHHHHH
Confidence 678888889888887754 5688888888888884 57888999999999999999999 899999999999888777
Q ss_pred HHHHHHHHHH
Q 013948 287 IRMAEQKLRE 296 (433)
Q Consensus 287 l~~~~~~~~~ 296 (433)
...+..++.+
T Consensus 118 k~~Ie~ki~k 127 (134)
T 3o48_A 118 KSMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7666655543
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.77 E-value=0.0012 Score=52.85 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHhhcH---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 209 GNNAVYYSNRAAAYTQIHQY---AEAVRDCLKSIDIDPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 209 p~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
.-...+.|++|+++.+..+. .+++..++..++.+|. ..+++|.+|..++++|+|++|.. +.+..|+..|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~-y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR-YVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHH-HHHHHHhcCCCcHHHH
Confidence 45789999999999998754 5799999999999884 67899999999999999999999 9999999999999988
Q ss_pred HHHHHHHHHH
Q 013948 285 ENIRMAEQKL 294 (433)
Q Consensus 285 ~~l~~~~~~~ 294 (433)
.....+..++
T Consensus 115 ~Lk~~Ie~~i 124 (144)
T 1y8m_A 115 ALKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766665443
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.67 E-value=0.00023 Score=58.69 Aligned_cols=118 Identities=15% Similarity=0.096 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---Cc
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP---NY 245 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~~ 245 (433)
.++++.-...++..|.|+.|+-....++.+..++ ..+++.+|.+++..++|..|...|+++|.... .+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 5667777788889999999999988877664332 34788899999999999999999999877642 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccC
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTS 308 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 308 (433)
......+ +. +. -...... .+.+.++.+.++.|+.+++++.+|+...+...
T Consensus 100 ~s~~~~~-------~~-~s----s~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 100 SKVRPST-------GN-SA----STPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CCccccc-------cc-cC----CCccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 2221111 10 00 1111112 24567899999999999999999999876543
No 228
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.51 E-value=0.0064 Score=60.54 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=110.0
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhc-CCCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQS---------QQYSDAIELYSFAIALC-GNNAVYYS 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~-p~~~~~~~ 216 (433)
.|++++|+.+|++.....-. |+ ...|..+-..+... +..++|.+.|.+..... +-+...|.
T Consensus 39 ~G~~~~A~~lf~~M~~~Gv~--------pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 39 KGDVLEALRLYDEARRNGVQ--------LS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp SCCHHHHHHHHHHHHHHTCC--------CC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--------CC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999998875211 11 34455444444433 34788888888876642 22677788
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDID-PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLD-PNNEAVKENIRMAEQKL 294 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (433)
.+-.+|.+.|++++|+..+++..+.. .-+...|..+-..|.+.|++++|.. .|++..+.. .-+...+..+-.++.+.
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~-l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE-VDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH-HHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 88888899999999999998887763 2356678888888889999999999 888887653 23566777888888888
Q ss_pred HHHHHhccccccc
Q 013948 295 REERQRTGWDQTT 307 (433)
Q Consensus 295 ~~~~~a~~~~~~~ 307 (433)
|+.++|...++..
T Consensus 189 g~~d~A~~ll~~M 201 (501)
T 4g26_A 189 KNADKVYKTLQRL 201 (501)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8888887775544
No 229
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.48 E-value=0.013 Score=58.21 Aligned_cols=136 Identities=10% Similarity=0.041 Sum_probs=105.9
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 225 (433)
.+.+++|.++|.+.....-. |+ ..+|..+-..+.+.|++++|.++|.+..... .-+...|..+-..|.+.
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~--------Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVV--------PN-EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCC--------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhCCC--------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 47889999999987664210 11 5678888899999999999999999987652 23678888888999999
Q ss_pred hcHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Q 013948 226 HQYAEAVRDCLKSIDIDP-NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL--DPNNEAVKENIRMAEQK 293 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~--~p~~~~~~~~l~~~~~~ 293 (433)
|+.++|...|+...+..- -+...|..+-.++.+.|++++|.. .|++.-+. .|+ ...+..+-..+..
T Consensus 154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~-ll~~Mr~~g~~ps-~~T~~~l~~~F~s 222 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK-TLQRLRDLVRQVS-KSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTSSBC-HHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH-HHHHHHHhCCCcC-HHHHHHHHHHHhc
Confidence 999999999999887642 356788889999999999999999 99987654 454 4445555444443
No 230
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=97.34 E-value=0.00014 Score=47.09 Aligned_cols=44 Identities=25% Similarity=0.426 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhhhhCC---CCCCCchhHHHHHHHHHHhhcCCCCCC
Q 013948 13 SRRIVRSFLHFLDSVEP---APGVDLEGLEVARECLTEVFKLDSPSA 56 (433)
Q Consensus 13 ~~~~~~~~~~~l~~~~~---~~~~~~~~~e~A~~~~~kAl~ldP~~~ 56 (433)
.++|+.+|+.||+.... +.....|.+|.|++|+..|++++|.+.
T Consensus 2 ~K~la~sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~~d~ 48 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDS 48 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCSSCC
T ss_pred chHHHHHHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCCcccc
Confidence 46899999999988754 445577899999999999999999986
No 231
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=97.24 E-value=0.00026 Score=49.41 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=40.9
Q ss_pred CChhhHHHHHHHHHHhhhhCC---CCCCCchhHHHHHHHHHHhhcCCCCCC
Q 013948 9 DSPLSRRIVRSFLHFLDSVEP---APGVDLEGLEVARECLTEVFKLDSPSA 56 (433)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~e~A~~~~~kAl~ldP~~~ 56 (433)
++...++|+.+|+.||+.... +.....|.+|.|++|+..|++++|.+.
T Consensus 3 ~~~~~K~la~sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~~~d~ 53 (74)
T 2lxb_A 3 DSASKEEIAALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFEREAV 53 (74)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCTTTH
T ss_pred CchhHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 456688999999999998854 444577899999999999999999985
No 232
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=97.20 E-value=0.00022 Score=51.63 Aligned_cols=63 Identities=24% Similarity=0.418 Sum_probs=47.5
Q ss_pred ChhhHHHHHHHHHHhhhhCC---CCCCCchhHHHHHHHHHHhhcCCCCCCC-----CCCCCchHHHHhhhh
Q 013948 10 SPLSRRIVRSFLHFLDSVEP---APGVDLEGLEVARECLTEVFKLDSPSAD-----GQRKPDSLIDIFNSQ 72 (433)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~e~A~~~~~kAl~ldP~~~~-----~~~~~~~l~~~~~~~ 72 (433)
+...++|+.+|+.||+.... +.....|.+|.|++|+..||+++|.+.. .-.....|..+|..+
T Consensus 16 ~~skKrLA~sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd~~D~~~~v~~~~~g~q~L~eIf~~~ 86 (92)
T 4asv_A 16 SASKEEIAALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFEREAVSGILGKSEFKGQHLADILNSA 86 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHSSBTTCCHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCchhhhHHHhhhccCCCCHHHHHHHh
Confidence 34578899999999998854 4445778999999999999999999852 113355666666544
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.20 E-value=0.0039 Score=49.27 Aligned_cols=79 Identities=6% Similarity=-0.056 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQ---YSDAIELYSFAIALCGN-NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
..+.+.+|.++....+ ..++|..++..++.+|. ..++++.+|..++++|+|++|..+.+.+++..|+|..+.....
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 6788888888887764 56799999999998884 4789999999999999999999999999999999988766554
Q ss_pred HHH
Q 013948 254 LAY 256 (433)
Q Consensus 254 ~~~ 256 (433)
.+-
T Consensus 120 ~Ie 122 (134)
T 3o48_A 120 MVE 122 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.13 E-value=0.0053 Score=49.17 Aligned_cols=78 Identities=6% Similarity=-0.045 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQ---YSDAIELYSFAIALCGN-NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLG 253 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 253 (433)
..+.+.+|.++....+ ..+++..++..+...|. ..+++|.+|..++++|+|++|..+.+.+|+..|+|..+.....
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 6788888888887764 46799999999998885 5789999999999999999999999999999999987765544
Q ss_pred HH
Q 013948 254 LA 255 (433)
Q Consensus 254 ~~ 255 (433)
.+
T Consensus 119 ~I 120 (144)
T 1y8m_A 119 MV 120 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.012 Score=60.99 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKS 238 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 238 (433)
...+...+..+..+|+|+-|+.+.++|+...|.+...|+.|+.||..+|+|+.|+-.++-+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4466667888889999999999999999999999999999999999999999999988776
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.013 Score=60.60 Aligned_cols=113 Identities=10% Similarity=0.060 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--------cCCC------
Q 013948 149 QVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVM---QSQQYSDAIELYSFAIAL--------CGNN------ 211 (433)
Q Consensus 149 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~--------~p~~------ 211 (433)
-++.|+.++++....+|.. ..++..+.+.. ...+--+|+..+.++++. .+.+
T Consensus 264 ~~~~a~~~le~L~~~~p~~-----------~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 264 LVDFTIDYLKGLTKKDPIH-----------DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp GHHHHHHHHHHHHHHCGGG-----------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCch-----------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 3688999999999888864 23333332221 223445677777777642 2222
Q ss_pred ----HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 212 ----AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 212 ----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
...+...+.-+...|+|+-|+.+.++|+...|.....|+.|+.||..+|+|+.|+- .++.+
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL-tLNSc 397 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF-AINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH-HHHHS
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH-HHhcC
Confidence 33566667778889999999999999999999999999999999999999999999 77765
No 237
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.73 E-value=0.19 Score=41.38 Aligned_cols=185 Identities=13% Similarity=0.053 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-----------------
Q 013948 179 EIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI----------------- 241 (433)
Q Consensus 179 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------- 241 (433)
+.-..++..++-.|+|..++-++. +-+.....+.-+.||.++++|..|+.+++..++-
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 345567888899999998876554 3456777888899999999999999999999932
Q ss_pred CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhcccccc-cCCCccchhhh
Q 013948 242 DPNYS-KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMA--EQKLREERQRTGWDQT-TSSSHYSQESN 317 (433)
Q Consensus 242 ~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~~~-~~~~~~~~~~~ 317 (433)
+|.+. ..+..+|.++.+.|+.++|+. ++.......|-.+.+-..+-.- ... .+.+.....-+. ...........
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~-y~~~Sf~~~~lf~~vEnliyeN~vp~~-~d~~~i~~~~~~~i~~~y~~d~~~ 186 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIG-HYVRSFGKSFLFSPVENLLLENKVPQK-RDKENVRQTGRRGIEEEYVSDSIE 186 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCCCHHHHHHHHHTTCCCCC-C-----------CHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhh-HhhhhcCCccccchHHHHHhhcCCCcc-cchHHHHhhhhccchhhhhhhHHH
Confidence 23444 355668999999999999999 9999998887655543222100 000 000000000000 00000000000
Q ss_pred hhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 318 QSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 318 ~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
++-.... ... -...-| .....+..-++..+..+|-.++...+|...-..||.+
T Consensus 187 lHe~~s~-----~~ikkY~n~iP-----GiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 187 FHESLSP-----SLVKKYMEHVP-----GIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHCCH-----HHHHHHHTSTT-----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred HHHhccH-----HHHHHHHHhCC-----CchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 0000000 000 122346 6666666555578999999999999999998888864
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.60 E-value=0.025 Score=45.68 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQ 227 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 227 (433)
+-+++-++.|++|+...|... ..........|...+.. ...++.++|.+.|+.++.++...+.+|...|.--.++|+
T Consensus 33 ~~l~rlrd~YerAia~~Pp~k--~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgn 109 (161)
T 4h7y_A 33 ALLNKLIGRYSQAIEALPPDK--YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGN 109 (161)
T ss_dssp HHHHHHHHHHHHHHHHSCGGG--GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHcCCccc--cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc
Confidence 445788899999999887652 22334456677777755 566999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHH
Q 013948 228 YAEAVRDCLKSIDIDPNYSK 247 (433)
Q Consensus 228 ~~~A~~~~~~al~~~p~~~~ 247 (433)
...|...+.+++.+.|....
T Consensus 110 l~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 110 VKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHhccCCCcHH
Confidence 99999999999999987654
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.20 E-value=0.057 Score=48.19 Aligned_cols=128 Identities=11% Similarity=0.071 Sum_probs=91.5
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 013948 221 AYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQR 300 (433)
Q Consensus 221 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 300 (433)
-+++.|+.++|+..+...++.+|.+......+-..++-.|+|+.|.. .++.+.+++|.....-..+..+........+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~-QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~- 83 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE-QLMQSIKLFPEYLPGASQLRHLVKAAQARKD- 83 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCchhhHHHHHHHHHHHHHHHHHH-
Confidence 35678899999999999999999999999999999999999999999 9999999999876544333222111111111
Q ss_pred cccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCCCCCc
Q 013948 301 TGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSDEPGI 380 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l~P~~ 380 (433)
.+. -...| .+-..| .........+ ......|+.++|.+.-.+|++..|..
T Consensus 84 --vfa-G~~~P---------------------~~~g~~-----~~w~~~ll~A-l~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 84 --FAQ-GAATA---------------------KVLGEN-----EELTKSLVSF-NLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp --HTT-SCCCE---------------------ECCCSC-----HHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred --HHc-CCCCC---------------------CCCCCC-----HHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 111 00111 133345 5566666666 66777899999999999999988876
No 240
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.75 E-value=0.062 Score=53.02 Aligned_cols=79 Identities=14% Similarity=0.133 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013948 214 YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQK 293 (433)
Q Consensus 214 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (433)
++..+|.+......+..|..+|.+|+.+.|++...+..||.+....|+.-+|+- +|.+++......+.+..+|...+.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y-~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIF-YYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHH-HHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHH-HHHHHHhcCCCChhHHHHHHHHHHH
Confidence 566677777777777888888888888888888888888888888888888887 8888887766677777777766654
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.44 E-value=0.28 Score=46.81 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=71.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 185 GNRVMQSQQYSDAIELYSFAIALCGNN----------------------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 185 g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
|......|+.+.|...+.+|+.+.... ..+...++.++...|++.+|+..+..++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333445677777888888887663211 1245566778889999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 243 PNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 243 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
|-+..+|..+-.++...|+..+|+. .|+++-+
T Consensus 202 P~~E~~~~~lm~al~~~Gr~~~Al~-~y~~~r~ 233 (388)
T 2ff4_A 202 PYREPLWTQLITAYYLSDRQSDALG-AYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 9999999999999999999999999 8887643
No 242
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.30 E-value=0.11 Score=51.29 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYY 257 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 257 (433)
...+..+|.+......+..|..+|.+|+.+.|++...++.+|.+....|+.-+|+-+|.+++......+.+..++...+.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999988888888888888876
Q ss_pred H
Q 013948 258 A 258 (433)
Q Consensus 258 ~ 258 (433)
.
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 5
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.11 E-value=0.27 Score=43.81 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=57.1
Q ss_pred HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHH
Q 013948 187 RVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSK 247 (433)
Q Consensus 187 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 247 (433)
.+++.|.+++|+......++.+|.|+.....+-.++.-.|+|+.|...++.+.+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4567899999999999999999999999999999999999999999999999999998754
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.71 Score=38.46 Aligned_cols=98 Identities=8% Similarity=-0.010 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIH 226 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 226 (433)
.|+++.|.++.++. ++ ...|..+|......|+++-|+++|+++- +.. .+..+|.-.|
T Consensus 18 lg~l~~A~e~a~~l-----~~----------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~~---~L~~Ly~~tg 74 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----ND----------SITWERLIQEALAQGNASLAEMIYQTQH-----SFD---KLSFLYLVTG 74 (177)
T ss_dssp TTCHHHHHHHHHHH-----CC----------HHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CHH---HHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh-----CC----------HHHHHHHHHHHHHcCChHHHHHHHHHhC-----CHH---HHHHHHHHhC
Confidence 38888888876653 22 6689999999999999999999999863 322 2334566677
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013948 227 QYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKA 273 (433)
Q Consensus 227 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~a 273 (433)
+-+.-....+.+...+. + .....++..+|+++++++ .|.+.
T Consensus 75 ~~e~L~kla~iA~~~g~-~----n~af~~~l~lGdv~~~i~-lL~~~ 115 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRED-F----GSMLLNTFYNNSTKERSS-IFAEG 115 (177)
T ss_dssp CHHHHHHHHHHHHHTTC-H----HHHHHHHHHHTCHHHHHH-HHHHT
T ss_pred CHHHHHHHHHHHHHCcc-H----HHHHHHHHHcCCHHHHHH-HHHHC
Confidence 77665555555544432 1 223456678888888888 77553
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.25 E-value=0.31 Score=46.50 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=73.1
Q ss_pred chHHHHHHHHHHHHHHHhhcccccc------------chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAY------------NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
|+.+.|...+++++.+.....-... -......+...++..+...|++.+|+..+.+++..+|-+..+|
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 6788888888888887632210000 0112233455677778899999999999999999999999999
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhc
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDI 241 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~ 241 (433)
..+-.++...|+..+|+..|+++.+.
T Consensus 209 ~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 209 TQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987653
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.91 E-value=0.26 Score=51.49 Aligned_cols=18 Identities=0% Similarity=-0.005 Sum_probs=11.2
Q ss_pred HHHHHHHHhhcccccCCCh
Q 013948 345 IASMLMNMASNMPQAQPSQ 363 (433)
Q Consensus 345 ~~~a~~~la~~~~~~~g~~ 363 (433)
.+......+ ..+...|+.
T Consensus 782 i~~~~~~~~-~~L~~~~~~ 799 (814)
T 3mkq_A 782 VNDIVTKWK-ENLILNGKN 799 (814)
T ss_dssp HHHHHHHHH-HHHHTTTCH
T ss_pred HHHHHHHHH-HHHHhccch
Confidence 455666666 666677764
No 247
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.37 Score=46.71 Aligned_cols=100 Identities=10% Similarity=-0.054 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC--CcH----HH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP--NYS----KA 248 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~ 248 (433)
..++..+|..++..|++++|.++|.++....... ...+.....++...++|..+...+.++..+-. .++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 5678899999999999999999999998876543 67888889999999999999999999876621 222 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhCC
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQLDP 278 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~~~p 278 (433)
....|.++...++|..|.. .|-.++.-..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~-~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAK-LLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHH-HHHHHHHHSC
T ss_pred HHHHHHHHHHhChHHHHHH-HHHHHhccCC
Confidence 4456778888999999999 9988876543
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.53 E-value=5.2 Score=37.95 Aligned_cols=122 Identities=9% Similarity=0.062 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--C----HHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAE--IFKCQGNRVMQSQQYSDAIELYSFAIALCGN--N----AVYYSNRA 219 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la 219 (433)
+..+.-++++.++++-..+. +..+.. .-..+|..|+..|+|.+|...+.+.++.... + .+++..-.
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~------~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~ 146 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQE------KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLES 146 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 34466677777777754332 122222 3347899999999999999999998875433 2 46677788
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcC---CCc----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDID---PNY----SKAYSRLGLAYY-AQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~lg~~~~-~~g~~~~A~~~~~~~al~~ 276 (433)
.+|..++++.++...+.++.... +.+ +.....-|..+. ..++|..|.. +|-.+++-
T Consensus 147 ~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~-~F~eaf~~ 210 (394)
T 3txn_A 147 KTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFS-YFYEAFEG 210 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHH-HHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHH-HHHHHHhc
Confidence 89999999999999999987653 122 344555688888 8999999999 88888753
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.96 E-value=0.67 Score=48.31 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFA 204 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 204 (433)
...|..+|..+...++++.|+.+|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 456677777777777777777777765
No 250
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.98 E-value=0.18 Score=49.57 Aligned_cols=131 Identities=12% Similarity=0.009 Sum_probs=60.2
Q ss_pred CcchHHHHHHHHHHHHH--HHhhccccccchhhHHHHHHHHHHHHHHccCHHHHH----------HHHHHHHHh-----c
Q 013948 146 DPSQVDKASRIFHDAIN--EMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI----------ELYSFAIAL-----C 208 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~----------~~~~~al~~-----~ 208 (433)
+.+++++|.++....+. ........ .-+.-.+..|+..+.++...|+..... ..+-.+++. +
T Consensus 148 d~k~~~~~~~~~~~~~~~~~l~~~nrr-tlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 148 DSKELEQLVEFNRKVVIPNLLCYYNLR-SLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhHH-hHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 46788888887766652 11110000 001223667777777777777665432 122222222 2
Q ss_pred CC-CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCC
Q 013948 209 GN-NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY-------SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNN 280 (433)
Q Consensus 209 p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~ 280 (433)
+. .+.+++.+-..|...+.|++|.....++. .|.. ...++.+|.++.-+++|.+|.+ ++..|+...|.+
T Consensus 227 ~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~-~L~~A~rkap~~ 303 (523)
T 4b4t_S 227 NETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANE-YIIAAIRKAPHN 303 (523)
T ss_dssp SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHTSSCSCS
T ss_pred cchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCcc
Confidence 22 26788888899999999999999999985 3432 4567789999999999999999 999999988754
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.82 E-value=3.4 Score=39.99 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHhhcHHHHHHHHHHHHh---cCCCcH-
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGN--N----AVYYSNRAAAYTQIHQYAEAVRDCLKSID---IDPNYS- 246 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~- 246 (433)
.+.....++.++...|++.+|...+.....-.-. + ..++.....++...+++..|...+.++.. -.+..+
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 4667788999999999999999999987643221 1 56788889999999999999999998742 233333
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 247 ---KAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 247 ---~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
..+...|.++...++|.+|.. +|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~-~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQ-YLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhc
Confidence 456668999999999999999 99988764
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.90 E-value=4.3 Score=43.35 Aligned_cols=100 Identities=10% Similarity=-0.067 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-CCcHHHHHH
Q 013948 177 LAEIFKCQGNRVMQSQQYSDAIELYSFAIAL----CGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID-PNYSKAYSR 251 (433)
Q Consensus 177 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 251 (433)
....+..+-..+.+.|+.++|..+|....+. ..-+...|+-+-..|.+.|+.++|.+.|++..+.. .-+...|..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3557888889999999999999999775432 23477889999999999999999999999988764 235667777
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhhC
Q 013948 252 LGLAYYAQGN-YNDAIEKGFKKALQLD 277 (433)
Q Consensus 252 lg~~~~~~g~-~~~A~~~~~~~al~~~ 277 (433)
+-.++.+.|+ .++|.. .|++..+..
T Consensus 206 LI~glcK~G~~~e~A~~-Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIER-CLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTCCHHHHHH-HHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHH-HHHHHHHcC
Confidence 8788999898 478888 999887653
No 253
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.11 E-value=2.2 Score=35.17 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH--Hh---------------cCCCHH-HHHHHHHHHHHhhcHHHHHHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAI--AL---------------CGNNAV-YYSNRAAAYTQIHQYAEAVRDCLKSI 239 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al 239 (433)
..+.+..+.|+...++|..|+..++..+ ++ +|.+.+ .+..+|.++.+.|+-++|+.++....
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 6777888999999999999999999998 22 233433 46678999999999999999999999
Q ss_pred hcCCCcHHH
Q 013948 240 DIDPNYSKA 248 (433)
Q Consensus 240 ~~~p~~~~~ 248 (433)
..+|-.+.+
T Consensus 142 ~~~~lf~~v 150 (242)
T 3kae_A 142 GKSFLFSPV 150 (242)
T ss_dssp HHCCCHHHH
T ss_pred CCccccchH
Confidence 888865543
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.24 E-value=3.5 Score=45.17 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------------cCCCHHHHHHHHHHHHHhhcHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIAL-----------------------CGNNAVYYSNRAAAYTQIHQYAEAVRD 234 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~~~~A~~~ 234 (433)
+..-+.+|.++...|++++|..+|+++-.- ....+.+|+....++.+.+.++.+++.
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445689999999999999999999887311 011245677788889999999999999
Q ss_pred HHHHHhcCCC-cH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013948 235 CLKSIDIDPN-YS----KAYSRLGLAYYAQGNYNDAIEKGFKK 272 (433)
Q Consensus 235 ~~~al~~~p~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~~ 272 (433)
.+.|++..+. +. ..|.++=..+...|+|++|.. .+..
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~-aL~~ 963 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV-ALMV 963 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH-HHHH
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH-HHHh
Confidence 9999987643 32 267778888899999999988 6644
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.57 E-value=2.1 Score=47.01 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=84.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc----------------------
Q 013948 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI---------------------- 241 (433)
Q Consensus 184 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------- 241 (433)
+...+...+.++-+.+ .+...|.++...|.+|.++...|++++|..+|+++-.-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3445566677765544 34457788888899999999999999999999887321
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHHHHHHHhcccc
Q 013948 242 -DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDP-NNEA----VKENIRMAEQKLREERQRTGWD 304 (433)
Q Consensus 242 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p-~~~~----~~~~l~~~~~~~~~~~~a~~~~ 304 (433)
....+..|+.+..++.+.+.++.+++ ..+.|++..+ ++.. .|..+=..+..+|++++|-...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~-fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALE-FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHH-HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 11134567777888889999999999 8999998764 3332 5666777777888888875543
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.84 E-value=3.9 Score=41.43 Aligned_cols=90 Identities=10% Similarity=-0.067 Sum_probs=53.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 013948 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 184 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 263 (433)
++..+...+...++...+.+......++. ..-.++...+..|++..|...+.+.-...+..+...|.+|.++..+|+.+
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~ 336 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA 336 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHH
Confidence 34334444434455666666554333332 22233333445678888877776654433345677777788777788888
Q ss_pred HHHHHHHHHHHh
Q 013948 264 DAIEKGFKKALQ 275 (433)
Q Consensus 264 ~A~~~~~~~al~ 275 (433)
+|.. .|+++..
T Consensus 337 ~a~~-~~~~~a~ 347 (618)
T 1qsa_A 337 EAKE-ILHQLMQ 347 (618)
T ss_dssp HHHH-HHHHHHT
T ss_pred HHHH-HHHHHhc
Confidence 8877 7777764
No 257
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.27 E-value=6.9 Score=32.45 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=62.6
Q ss_pred HHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 013948 189 MQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEK 268 (433)
Q Consensus 189 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 268 (433)
...|+++.|.+..+.. ++...|-.+|...+..|+++-|..+|.++-.. -.+..+|.-.|+.+.-..
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L~k- 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKLSK- 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHHHH-
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHHHH-
Confidence 5678999998886654 57889999999999999999999999887332 234445566666655444
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhccccc
Q 013948 269 GFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQ 305 (433)
Q Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (433)
..+.+.... + . .....++..+|+.+++...+.
T Consensus 82 la~iA~~~g-~-~---n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 82 MQNIAQTRE-D-F---GSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHTT-C-H---HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCc-c-H---HHHHHHHHHcCCHHHHHHHHH
Confidence 333333222 1 1 111223455666666655544
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.10 E-value=19 Score=34.75 Aligned_cols=196 Identities=7% Similarity=-0.029 Sum_probs=114.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHH---HH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAA---YT 223 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~ 223 (433)
.|++..|++.+...-+..... .+......+...+..+++..++|+...+.+.-..........+...+... +.
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~----~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQA----SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSS----CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhc----cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 367888887654333322111 12233366777788889999999988887765555444433332222211 11
Q ss_pred -HhhcHHHHHHHHHHHHhcC----C-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-C-CC----CHHHHH
Q 013948 224 -QIHQYAEAVRDCLKSIDID----P-------NYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-D-PN----NEAVKE 285 (433)
Q Consensus 224 -~~~~~~~A~~~~~~al~~~----p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-~-p~----~~~~~~ 285 (433)
.....+ .......+..- . ........|+.++...|++.+|.. .+.....- . .. -.+.+.
T Consensus 105 ~~~~~~d--~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~-iL~~l~~Et~~~~~~~~kve~~l 181 (445)
T 4b4t_P 105 KSSKSLD--LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAAD-ILCELQVETYGSMEMSEKIQFIL 181 (445)
T ss_dssp HHHCTTH--HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHCSSSCHHHHHHHHH
T ss_pred hcCCchh--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHH-HHHHHHHHHHhcccHHHHHHHHH
Confidence 111111 11122222221 1 134567889999999999999999 88886531 1 11 145666
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHH-HHHHHHhhcccccCCChh
Q 013948 286 NIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIA-SMLMNMASNMPQAQPSQS 364 (433)
Q Consensus 286 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~-~a~~~la~~~~~~~g~~~ 364 (433)
...+++...+++.+|.....++..... .....| +.- ..+..+| .++...++|.
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~--------------------~~~~~~-----~lk~~~~~~~~-~~~~~e~~y~ 235 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTF--------------------KNPKYE-----SLKLEYYNLLV-KISLHKREYL 235 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHH--------------------HSSCCH-----HHHHHHHHHHH-HHHHHHCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhc--------------------ccCCcH-----HHHHHHHHHHH-HHHHHhhhHH
Confidence 778888888888888877664321100 011122 333 3445555 8888889999
Q ss_pred hHHHHHhhhcC
Q 013948 365 RQGEDSNVSGS 375 (433)
Q Consensus 365 ~A~~~~~~al~ 375 (433)
+|-.+|..+++
T Consensus 236 ~a~~~y~e~~~ 246 (445)
T 4b4t_P 236 EVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888887764
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.46 E-value=6.3 Score=37.39 Aligned_cols=111 Identities=9% Similarity=-0.004 Sum_probs=82.5
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---CCC----HHHHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC---GNN----AVYYSNRA 219 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~la 219 (433)
.|+|.+|.+.+.+.++.....+ +.....+.+......+...+++.++...|.+|.... +.+ +.+...-|
T Consensus 112 ~~~y~~a~~~i~~l~~~~~~~d----d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~G 187 (394)
T 3txn_A 112 TALYTEALALGAQLLRELKKLD----DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSG 187 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSS----CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhh
Confidence 6999999999999998765532 235568888999999999999999999999987653 123 34566678
Q ss_pred HHHH-HhhcHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCC
Q 013948 220 AAYT-QIHQYAEAVRDCLKSIDIDPN-----YSKAYSRLGLAYYAQGN 261 (433)
Q Consensus 220 ~~~~-~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~ 261 (433)
..+. ..++|..|...|-.+++-... ...+...++.|-.-.++
T Consensus 188 i~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 188 ILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 8888 899999999999998754322 12344445555555555
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.02 E-value=15 Score=37.14 Aligned_cols=189 Identities=6% Similarity=-0.196 Sum_probs=107.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAV----YYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAY 256 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 256 (433)
....+.......+.+.|...+.+.....+-+.. .+..+|.-+...+...++...+.+.....++........+. .
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-A 295 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-A 295 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-H
Confidence 344455555667899999999887654333322 22223333333443567778888776655544433333444 4
Q ss_pred HHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhhhhhhcCCC-CCCCCCccccc
Q 013948 257 YAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQTTSSSHYSQESNQSTGGFR-SHGTPPSFTMP 335 (433)
Q Consensus 257 ~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~al~ 335 (433)
...|+++.|.. +|.+.-.-........+.+|+++..+|+.++|...+..+...............|. +.-... .
T Consensus 296 lr~~d~~~a~~-~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~----~ 370 (618)
T 1qsa_A 296 LGTGDRRGLNT-WLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKID----K 370 (618)
T ss_dssp HHHTCHHHHHH-HHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCC----C
T ss_pred HHCCCHHHHHH-HHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCC----C
Confidence 56799999999 99876554445688899999999999999998887776653221111001111121 110000 1
Q ss_pred CCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhhhcCC
Q 013948 336 FNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSGSD 376 (433)
Q Consensus 336 ~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al~l 376 (433)
..+.....-........+ ..+...|....|...+...+..
T Consensus 371 ~~~~~~~~~~~~~~~~r~-~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARV-RELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp CCSCCCCHHHHSHHHHHH-HHHHHTTCHHHHHHHHHHHHTT
T ss_pred CChhHHhhhccChHHHHH-HHHHHCCChhhHHHHHHHHHhc
Confidence 111000000111224455 5677788888888888777653
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.76 E-value=6.6 Score=37.75 Aligned_cols=91 Identities=8% Similarity=0.045 Sum_probs=71.6
Q ss_pred CcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--CC----HHHHHHHH
Q 013948 146 DPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--NN----AVYYSNRA 219 (433)
Q Consensus 146 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la 219 (433)
+.|++++|.+.|.++....... ....+.++.+..++...++|..+...+.++..... .+ ..+....|
T Consensus 143 ~~Gd~~~A~~~~~~~~~~~~~~-------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 143 QIGDKDNAEKTLGKSLSKAIST-------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHCCCTTHHHHHHHHHHHHTCC-------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCh-------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 4599999999999988765443 34478888889999999999999999999876532 22 23455667
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCC
Q 013948 220 AAYTQIHQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 220 ~~~~~~~~~~~A~~~~~~al~~~p 243 (433)
.++...++|..|...|..++....
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhChHHHHHHHHHHHhccCC
Confidence 888889999999999988877643
No 262
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=78.91 E-value=20 Score=38.42 Aligned_cols=90 Identities=7% Similarity=0.004 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALC-GNNAVYYSNRAAAYTQI 225 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 225 (433)
.|++++|..+|.+...+..... .|+ ...|..+-..+.+.|++++|.+.|.+..+.. .-|...|..+-.++.+.
T Consensus 140 ~G~leeA~~Lf~eM~~m~~kG~-----~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~ 213 (1134)
T 3spa_A 140 TDQLPLAHHLLVVHHGQRQKRK-----LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213 (1134)
T ss_dssp HTCHHHHHHHHHHHHHSHHHHT-----TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCC-----CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Confidence 6999999999977554311100 011 6788899999999999999999999987652 23677777777889998
Q ss_pred hc-HHHHHHHHHHHHhcC
Q 013948 226 HQ-YAEAVRDCLKSIDID 242 (433)
Q Consensus 226 ~~-~~~A~~~~~~al~~~ 242 (433)
|+ .++|...+++..+..
T Consensus 214 G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 214 DQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp TCCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcC
Confidence 97 478889988877653
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.46 E-value=18 Score=38.67 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=71.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc---------------------C
Q 013948 184 QGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI---------------------D 242 (433)
Q Consensus 184 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------~ 242 (433)
+...+...|.++-|. ..+...|.++..-|-+|.++...|++++|..+|++|-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 455666778777554 355677888888899999999999999999999876421 0
Q ss_pred CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CCCCHHH
Q 013948 243 PN--YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-DPNNEAV 283 (433)
Q Consensus 243 p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-~p~~~~~ 283 (433)
+. ....|.....++...+-++-++. ..+.|++. .++++..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~-fA~lAI~~~~~dd~~l 934 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALE-FSLLADASKETDDEDL 934 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCCSCCHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhcccCCccc
Confidence 11 23466778888899999999999 89999975 4556553
No 264
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=77.32 E-value=0.0055 Score=59.35 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSID 240 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 240 (433)
+..|..+|..+...++..+||+.|-+| .+|.+ +...-.+..+.|+|++=+.++..+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~---y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSS---YMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCS---SSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHH---HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 445555555555555555555555443 12222 22222333344555555555444443
No 265
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.85 E-value=4.1 Score=39.99 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCc
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNN-------AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNY 245 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 245 (433)
...+..+..+-+.|...+.|++|..+..++. .|.. ...+|.+|.++.-.++|.+|.+++..|++..|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3457788888999999999999999999985 4532 5678889999999999999999999999987753
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.02 E-value=42 Score=28.33 Aligned_cols=87 Identities=8% Similarity=0.081 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhhcHHHHH
Q 013948 155 RIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--CGNNAVYYSNRAAAYTQIHQYAEAV 232 (433)
Q Consensus 155 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~ 232 (433)
.++++++....++ .....++.....|...+..+ ..+...++.+.|.-.... .-..+..|...|..+...|++.+|.
T Consensus 58 ~lLErc~~~F~~~-~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 135 (202)
T 3esl_A 58 STMERCLIYIQDM-ETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAK 135 (202)
T ss_dssp HHHHHHHHHHTTC-GGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhccc-ccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5677777766554 23344566677777777665 234466777777665543 4456788888888888888888888
Q ss_pred HHHHHHHhcCC
Q 013948 233 RDCLKSIDIDP 243 (433)
Q Consensus 233 ~~~~~al~~~p 243 (433)
..|+.+++..-
T Consensus 136 ~Vy~~GI~~~A 146 (202)
T 3esl_A 136 VLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 88888888754
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=66.68 E-value=38 Score=26.87 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=73.8
Q ss_pred cchHHHHHHHHHHHHHHHhhcccc--------ccchhhHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHhcCCCHHHHH
Q 013948 147 PSQVDKASRIFHDAINEMEKSGAH--------AYNQKNLAEIFKCQGNRV--MQSQQYSDAIELYSFAIALCGNNAVYYS 216 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~~--------~~~~~~~~~~~~~lg~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~ 216 (433)
.|..++.+++..+.....+....+ ..+=......+-.+|..+ -.-|+...-+.+|-+. +..+ . +.
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n~~s-e-~v 94 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NTLN-E-HV 94 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TCCC-H-HH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---cchH-H-HH
Confidence 488999999998888765443100 000000111111222221 1234555555555442 2222 1 33
Q ss_pred HHH-HHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 217 NRA-AAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 217 ~la-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
.+| ..+..+|+-++--+.+...+.-++-++..++.+|.+|.+.|+..+|.+ .+.+|-+.
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~e-Ll~~AC~k 154 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATT-LLIEACKK 154 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHH-HHHHHHHh
Confidence 344 456677777777777777677777889999999999999999999999 88888764
No 268
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.44 E-value=48 Score=26.94 Aligned_cols=84 Identities=14% Similarity=0.291 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhhcHHHH
Q 013948 154 SRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIA--LCGNNAVYYSNRAAAYTQIHQYAEA 231 (433)
Q Consensus 154 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A 231 (433)
..++++++.....+ ....+++.....|...+... ++ +.++|..... +.-..+..|...|..+...|++.+|
T Consensus 43 ~~lLErc~~~f~~~-~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A 115 (164)
T 2wvi_A 43 STLLERAVEALQGE-KRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKA 115 (164)
T ss_dssp HHHHHHHHHHTTTC-GGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhh-hhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 34667777765443 23344566677777777654 33 5555655543 3455688888888889999999999
Q ss_pred HHHHHHHHhcCCC
Q 013948 232 VRDCLKSIDIDPN 244 (433)
Q Consensus 232 ~~~~~~al~~~p~ 244 (433)
...|+.+++....
T Consensus 116 ~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 116 DAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHTTCB
T ss_pred HHHHHHHHHcCCC
Confidence 9999999887643
No 269
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=64.21 E-value=18 Score=30.68 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCH
Q 013948 175 KNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCGNNA 212 (433)
Q Consensus 175 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 212 (433)
.......+.+|.+++..++|.+|.+.+..|+...|...
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 34577889999999999999999999999999988764
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=63.97 E-value=19 Score=24.94 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=28.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHH
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYY 215 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 215 (433)
...+|..+...|++++|..+|.+|+...|+-...+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 34578888899999999999999999988765544
No 271
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=63.85 E-value=1.1e+02 Score=29.51 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=65.1
Q ss_pred cchHHHHHHHHHHHHHHHhhccc--ccc----chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcC--C--------
Q 013948 147 PSQVDKASRIFHDAINEMEKSGA--HAY----NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIALCG--N-------- 210 (433)
Q Consensus 147 ~g~~~~A~~~~~~al~~~p~~~~--~~~----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~-------- 210 (433)
....+++...+.++....-.+-. ... .+.........+=.+|++.++...+...++..-...+ .
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 45777888888888877433211 101 1111222233344678999999888877754322221 1
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCc
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-DPNY 245 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~ 245 (433)
-+..+|.+|.++...++|.+|.+.+..|++. -|..
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 1568889999999999999999999999998 6654
No 272
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=61.76 E-value=17 Score=26.28 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 013948 176 NLAEIFKCQGNRVMQSQQYSDAIELYSFAIA 206 (433)
Q Consensus 176 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 206 (433)
+.+..+-.++..+...|+|++||++..+|..
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4466777788888899999999888777653
No 273
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=60.66 E-value=39 Score=26.78 Aligned_cols=62 Identities=8% Similarity=-0.064 Sum_probs=49.1
Q ss_pred HHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 181 FKCQGN-RVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 181 ~~~lg~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
+..+|. .+..+|+-++--+.+...+..++-++..++.+|.+|.+.|+..+|-+.+.+|.+..
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 444443 45677888888888877667777789999999999999999999999999998754
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.04 E-value=25 Score=37.56 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-c--------------------CC--CHHHHHHHHHHHHHhhcHHHHHHH
Q 013948 178 AEIFKCQGNRVMQSQQYSDAIELYSFAIAL-C--------------------GN--NAVYYSNRAAAYTQIHQYAEAVRD 234 (433)
Q Consensus 178 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~--------------------p~--~~~~~~~la~~~~~~~~~~~A~~~ 234 (433)
+..-|.+|.++...|++++|..+|++|-.- . ++ ...+|.....++.+.+-++-++..
T Consensus 840 ~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~f 919 (950)
T 4gq2_M 840 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 919 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 445688999999999999999999986421 0 01 124778888999999999999999
Q ss_pred HHHHHhc-CCCcHH
Q 013948 235 CLKSIDI-DPNYSK 247 (433)
Q Consensus 235 ~~~al~~-~p~~~~ 247 (433)
.+.||.. .++++.
T Consensus 920 A~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 920 SLLADASKETDDED 933 (950)
T ss_dssp HHHHHHTCCSCCHH
T ss_pred HHHHHhhcccCCcc
Confidence 9999975 445544
No 275
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=59.28 E-value=12 Score=26.64 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=7.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al 274 (433)
+.|+|++|+. +|..++
T Consensus 31 ~~g~y~eAl~-lY~~ai 46 (83)
T 2w2u_A 31 KEGNAEEAIT-NYKKAI 46 (83)
T ss_dssp HTTCHHHHHH-HHHHHH
T ss_pred HhccHHHHHH-HHHHHH
Confidence 4444444444 444433
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=59.06 E-value=34 Score=23.64 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHH
Q 013948 251 RLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVK 284 (433)
Q Consensus 251 ~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~ 284 (433)
.+|..+...|++++|.. +|-+|+...|.-....
T Consensus 22 ~~GE~L~~~g~~~~~~~-hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVD-HLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHCCCHHHHHH-HHHHHHHHcCCHHHHH
Confidence 36666777777777777 7777777766544433
No 277
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=58.53 E-value=13 Score=26.53 Aligned_cols=16 Identities=44% Similarity=0.671 Sum_probs=8.1
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al 274 (433)
+.|+|++|+. +|..++
T Consensus 23 ~~g~y~eAl~-lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAIT-YYKKAI 38 (83)
T ss_dssp HTTCHHHHHH-HHHHHH
T ss_pred HhccHHHHHH-HHHHHH
Confidence 4555555555 444443
No 278
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=58.15 E-value=5.4 Score=28.87 Aligned_cols=33 Identities=12% Similarity=-0.068 Sum_probs=28.7
Q ss_pred CCccHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 341 LPTDIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 341 ~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
.|.+.+..+-.++ ..+...|+|++|+++.++|.
T Consensus 10 spLn~AH~~~RrA-e~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 10 GPLNLAHQQSRRA-DRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp THHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHH-HHHHhcCCHHHHHHHHHHHH
Confidence 4567888889999 99999999999999888865
No 279
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=56.79 E-value=52 Score=26.63 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCC---HHHH---HH-H--HHHHHHhhcHHHHHHHHHHHHh
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIALCGNN---AVYY---SN-R--AAAYTQIHQYAEAVRDCLKSID 240 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~---~~-l--a~~~~~~~~~~~A~~~~~~al~ 240 (433)
.-+..|..++..|+|-+|-++++......+.. ...| .+ + |....+.|+...|...+.+++.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555777888899999999999888776544 1222 22 2 2233445666666666666655
No 280
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=56.78 E-value=1.2e+02 Score=27.68 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=27.2
Q ss_pred ChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhc
Q 013948 119 SKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKS 167 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 167 (433)
....+..++...+.... .|+|++|+..|+.+|...|-.
T Consensus 110 ~l~~L~~~Lk~gyk~~t-----------~gKf~eAl~~Fr~iL~~i~l~ 147 (325)
T 3mv2_A 110 GLDVVNEKMNEGYKNFK-----------LNKPDIAIECFREAIYRITLL 147 (325)
T ss_dssp CHHHHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHHhhee
Confidence 34555555555555433 699999999999999987754
No 281
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=55.94 E-value=56 Score=23.81 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=26.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHH
Q 013948 182 KCQGNRVMQSQQYSDAIELYSFAIALCGNNAVY 214 (433)
Q Consensus 182 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 214 (433)
..+|..+...|+++.|+.+|.+|+...|.-..+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 346888888999999999999999998864433
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.61 E-value=48 Score=28.44 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q 013948 210 NNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDID 242 (433)
Q Consensus 210 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 242 (433)
..+..|...|..+...|++.+|...|+.+++..
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 345555555555555555555555555555543
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.32 E-value=1.3e+02 Score=27.33 Aligned_cols=30 Identities=7% Similarity=-0.119 Sum_probs=22.1
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhh
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVS 373 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~a 373 (433)
.....+..++..-|...|+...|...+..-
T Consensus 185 ~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 185 STVAEFFSRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 666777777745577889999988876643
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.27 E-value=61 Score=25.96 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhhcHHHH
Q 013948 154 SRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--CGNNAVYYSNRAAAYTQIHQYAEA 231 (433)
Q Consensus 154 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A 231 (433)
..++++++....++ ....+++.....|...+... +++.+.|.-.... .-..+..|...|..+...|++.+|
T Consensus 48 ~~lLErc~~~f~~~-~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A 120 (152)
T 4a1g_A 48 ITLLEHLMKEFLDK-KKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHA 120 (152)
T ss_dssp HHHHHHHHHHHTTC-GGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccc-ccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45667777766544 23334455666777766543 2366666665543 445678888889999999999999
Q ss_pred HHHHHHHHhcCCCc
Q 013948 232 VRDCLKSIDIDPNY 245 (433)
Q Consensus 232 ~~~~~~al~~~p~~ 245 (433)
...|+.+++....-
T Consensus 121 ~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 121 SAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTCBS
T ss_pred HHHHHHHHHcCCcc
Confidence 99999999875443
No 285
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=50.81 E-value=95 Score=29.85 Aligned_cols=88 Identities=14% Similarity=-0.035 Sum_probs=63.9
Q ss_pred cCHHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC--------C--c
Q 013948 192 QQYSDAIELYSFAIALCGNNA----------------VYYSNRAAAYTQIHQYAEAVRDCLKSIDIDP--------N--Y 245 (433)
Q Consensus 192 ~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~--~ 245 (433)
...+++...+.++....-+|. ....++-.+|.++++...+...++..-...+ . -
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 456778888888877633221 1234455788999998888887765433322 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CCCC
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQL-DPNN 280 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~-~p~~ 280 (433)
....|.+|.++...++|.+|.+ ++..|+.. .|..
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~-~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFV-QFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHH-HHHHHHHhcCCcc
Confidence 4678889999999999999999 99999998 7754
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.41 E-value=1e+02 Score=24.91 Aligned_cols=60 Identities=7% Similarity=-0.075 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCc------HHHHHH---HHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 216 SNRAAAYTQIHQYAEAVRDCLKSIDIDPNY------SKAYSR---LGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 216 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~---lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
+..|..++..|+|-+|-+.++.+....+.. ...+.. .|..+.+.|+..-|.. .+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~-ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRS-LFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHH
Confidence 456777888899999999999999887654 222222 3445567899999999 99999863
No 287
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=46.51 E-value=41 Score=28.36 Aligned_cols=35 Identities=9% Similarity=-0.111 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcH
Q 013948 212 AVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYS 246 (433)
Q Consensus 212 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 246 (433)
....|.+|.++...++|.+|.+.+..|++.-|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 46778888888888999999999999988877653
No 288
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=46.47 E-value=37 Score=24.05 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=8.7
Q ss_pred HccCHHHHHHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIA 206 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~ 206 (433)
..|+|++|+.+|..+++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44555555555555443
No 289
>1ka8_A Putative P4-specific DNA primase; winged helix, transferase; 2.95A {Enterobacteria phage P4} SCOP: a.4.5.20
Probab=45.09 E-value=23 Score=26.10 Aligned_cols=44 Identities=11% Similarity=0.239 Sum_probs=34.3
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHhhhhCCCCCCCchhHHHHHHHH
Q 013948 1 MANSRIQTDSPLSRRIVRSFLHFLDSVEPAPGVDLEGLEVARECL 45 (433)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~A~~~~ 45 (433)
|||..|-+. .++..|+++++.|+...-....++..+|-+|+.--
T Consensus 23 mGna~~~p~-~pR~yLYhAYLaymea~g~~~pLsl~~Fg~~l~~a 66 (100)
T 1ka8_A 23 MGNASIIPR-NYRKYLYHAYLAYMEANGYRNVLSLKMFGLGLPVM 66 (100)
T ss_dssp CCCTTCCSC-CTTTBHHHHHHHHHHHTTCSCCCCHHHHHHHHHHH
T ss_pred eccCCCCCC-CchhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 677777543 34567999999999999888888999888876543
No 290
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=44.05 E-value=1.2e+02 Score=28.21 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=41.9
Q ss_pred HHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q 013948 231 AVRDCLKSIDI-----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL------DPNNEAVKENIRMAE 291 (433)
Q Consensus 231 A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~------~p~~~~~~~~l~~~~ 291 (433)
++..|.+++.. +..+...|..+|-.+++.+++.+|+. .+..+-.. ..+|.+.+..+-.+-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~-~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 346 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIA-SWVDAGYVAGKYNYSKDDEEMYKEFHEIA 346 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHH-HHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 55666666654 34567788889999999999999999 77776532 345677776655443
No 291
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.71 E-value=51 Score=33.48 Aligned_cols=53 Identities=17% Similarity=0.014 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 013948 211 NAVYYSNRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYN 263 (433)
Q Consensus 211 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 263 (433)
-.......|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|.-.
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45666677888888888888888888888888888888888888888877433
No 292
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=42.78 E-value=1.9e+02 Score=26.10 Aligned_cols=134 Identities=7% Similarity=0.040 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHH
Q 013948 119 SKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAI 198 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 198 (433)
..+..+.++.+.+.. |+|=+|.+.++-.....-... ......+.++.-+..+.+.|++..|.
T Consensus 12 ~~~r~l~rl~~~I~~--------------G~yYEAhQ~~Rtl~~Ry~~~~----~~~eAidlL~~ga~~ll~~~Q~~sa~ 73 (312)
T 2wpv_A 12 KLAKTLQRFENKIKA--------------GDYYEAHQTLRTIANRYVRSK----SYEHAIELISQGALSFLKAKQGGSGT 73 (312)
T ss_dssp CHHHHHHHHHHHHHH--------------TCHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhc--------------cChHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 355566677777666 777777777666555432210 01222445555566667777777766
Q ss_pred HHHHHHHHh-----cCCCHHHHHHHHHHHHHhhcHH-HHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHcCCHHHH
Q 013948 199 ELYSFAIAL-----CGNNAVYYSNRAAAYTQIHQYA-EAVRDCLKSIDI-------DPNYSKAYSRLGLAYYAQGNYNDA 265 (433)
Q Consensus 199 ~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A 265 (433)
+...-.++. .|-+....-.+..++.....-+ .=..+.+++++- .-.++..+..+|..+.+.|++.+|
T Consensus 74 DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 74 DLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 654333332 2333444455555544322111 012233333321 224789999999999999999999
Q ss_pred HHHHHH
Q 013948 266 IEKGFK 271 (433)
Q Consensus 266 ~~~~~~ 271 (433)
.. +|-
T Consensus 154 ~~-H~i 158 (312)
T 2wpv_A 154 ER-YFM 158 (312)
T ss_dssp HH-HHH
T ss_pred HH-HHH
Confidence 98 774
No 293
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=42.44 E-value=46 Score=23.50 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=8.3
Q ss_pred HccCHHHHHHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIA 206 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~ 206 (433)
..|+|++|+.+|..+++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34555555555544443
No 294
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=40.91 E-value=31 Score=24.63 Aligned_cols=16 Identities=13% Similarity=0.495 Sum_probs=8.5
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al 274 (433)
..|+|++|+. +|..++
T Consensus 28 ~~g~y~eAl~-lY~~Ai 43 (86)
T 4a5x_A 28 SESRYPQALV-CYQEGI 43 (86)
T ss_dssp HTTCHHHHHH-HHHHHH
T ss_pred HcCCHHHHHH-HHHHHH
Confidence 4555555555 555544
No 295
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=39.56 E-value=32 Score=26.21 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=7.4
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al 274 (433)
..|+|++|+. +|..++
T Consensus 30 ~ag~y~eAl~-lY~~Ai 45 (117)
T 2cpt_A 30 KAGNYEEALQ-LYQHAV 45 (117)
T ss_dssp HHTCHHHHHH-HHHHHH
T ss_pred HccCHHHHHH-HHHHHH
Confidence 3455555544 444443
No 296
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.51 E-value=37 Score=24.01 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=7.4
Q ss_pred HcCCHHHHHHHHHHHHH
Q 013948 258 AQGNYNDAIEKGFKKAL 274 (433)
Q Consensus 258 ~~g~~~~A~~~~~~~al 274 (433)
..|+|++|+. +|..++
T Consensus 25 ~~g~y~eAl~-~Y~~ai 40 (85)
T 2v6x_A 25 TATQYEEAYT-AYYNGL 40 (85)
T ss_dssp HTTCHHHHHH-HHHHHH
T ss_pred HcCCHHHHHH-HHHHHH
Confidence 4445554444 444443
No 297
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=38.63 E-value=53 Score=23.96 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=15.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhCCC
Q 013948 252 LGLAYYAQGNYNDAIEKGFKKALQLDPN 279 (433)
Q Consensus 252 lg~~~~~~g~~~~A~~~~~~~al~~~p~ 279 (433)
+|..+...|+++.|+. +|-+|+...|.
T Consensus 26 lGE~L~~~g~~e~av~-Hf~nAl~Vc~q 52 (95)
T 1om2_A 26 LGEELLAQGDYEKGVD-HLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHTCHHHHHH-HHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHH-HHHHHHHHcCC
Confidence 4555555555666665 56555555554
No 298
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=38.60 E-value=59 Score=23.11 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=12.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHH
Q 013948 185 GNRVMQSQQYSDAIELYSFAIA 206 (433)
Q Consensus 185 g~~~~~~~~~~~A~~~~~~al~ 206 (433)
|.-.-..|+|++|+.+|..+++
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3333455666666666666654
No 299
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.09 E-value=2.4e+02 Score=25.81 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=22.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013948 244 NYSKAYSRLGLAYYAQGNYNDAIEKGF 270 (433)
Q Consensus 244 ~~~~~~~~lg~~~~~~g~~~~A~~~~~ 270 (433)
.++..+..+|..|.+.+++.+|.. +|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~-H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEK-HL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHH-HH
Confidence 478889999999999999999988 76
No 300
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=37.06 E-value=2.4e+02 Score=25.57 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=27.9
Q ss_pred ChhHHHHHHHHHHHhhhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhc
Q 013948 119 SKDELFGQFFAALEKFHYFRTMPDGNDDPSQVDKASRIFHDAINEMEKS 167 (433)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 167 (433)
....+..++...+.... .|++.+|+..|+.+|...|-.
T Consensus 98 ~l~~l~~~Lk~gyk~~t-----------~gKf~eAl~~Fr~iL~~i~l~ 135 (320)
T 3mkr_B 98 KLNDLIQRLQLCYQLTT-----------VGKFEEAVEKFRSILLSVPLL 135 (320)
T ss_dssp CHHHHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHHHhhhe
Confidence 45555666665555543 599999999999999987654
No 301
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=35.43 E-value=1.9e+02 Score=27.41 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=41.8
Q ss_pred HHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q 013948 231 AVRDCLKSIDI-----DPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL------DPNNEAVKENIRMA 290 (433)
Q Consensus 231 A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~------~p~~~~~~~~l~~~ 290 (433)
++..|.+++.. +..+...|..+|-.+++.+++.+|+. .+..+-.. ..+|.+++..+-.+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~-~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQ-AWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHH-HHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 55556666554 34567788889999999999999999 87776532 34567777665444
No 302
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=35.36 E-value=67 Score=22.61 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=9.5
Q ss_pred HccCHHHHHHHHHHHHH
Q 013948 190 QSQQYSDAIELYSFAIA 206 (433)
Q Consensus 190 ~~~~~~~A~~~~~~al~ 206 (433)
..|+|++|+.+|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34566666665555554
No 303
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=34.41 E-value=69 Score=23.10 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=11.1
Q ss_pred chHHHHHHHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEM 164 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~ 164 (433)
.-.+.|+.++++|++.+
T Consensus 10 ~~l~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELD 26 (93)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567777777776653
No 304
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=34.31 E-value=2.4e+02 Score=26.65 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHH
Q 013948 193 QYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQYAEAVRDCLKSIDI-----DPNYSKAYSRLGLAYYAQGNYNDAIE 267 (433)
Q Consensus 193 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~ 267 (433)
+|.-|+-.+-..-++.|.... ..++..|.+|+.. +..+...|..+|-.+++.++|.+|+.
T Consensus 260 ~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~ 324 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQ 324 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHH
Confidence 455566655555555554311 1234555555553 34456778888888899999999998
Q ss_pred HHHHHHHhh------CCCCHHHHHHHHHHH
Q 013948 268 KGFKKALQL------DPNNEAVKENIRMAE 291 (433)
Q Consensus 268 ~~~~~al~~------~p~~~~~~~~l~~~~ 291 (433)
.+..+-.. ..+|.+.+..+-.+.
T Consensus 325 -~wa~aa~Vi~~YnY~reDeEiYke~~eIa 353 (489)
T 4gq4_A 325 -AWADTATVIQDYNYCREDEEIYKEFFEVA 353 (489)
T ss_dssp -HHHHHHHHHTTSCCCTTCHHHHHHHHHHH
T ss_pred -HhhhhhhhhhhcccccchHHHHHHHHHHH
Confidence 87776532 456777776665443
No 305
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=32.78 E-value=1e+02 Score=31.16 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 013948 246 SKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQ 299 (433)
Q Consensus 246 ~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 299 (433)
.......|...+..|+|.-|.+ ....++..+|++..+...++.++.++|...+
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~-l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVE-VVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3456667888889999999999 9999999999999999999999999987544
No 306
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=32.71 E-value=1.1e+02 Score=22.10 Aligned_cols=27 Identities=7% Similarity=-0.008 Sum_probs=17.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhcCC
Q 013948 184 QGNRVMQSQQYSDAIELYSFAIALCGN 210 (433)
Q Consensus 184 lg~~~~~~~~~~~A~~~~~~al~~~p~ 210 (433)
.|..++..|+|-+|-+.++......|+
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 355566667777777777766665543
No 307
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=32.54 E-value=2.9e+02 Score=25.21 Aligned_cols=190 Identities=8% Similarity=-0.019 Sum_probs=105.4
Q ss_pred chHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--cCCC----HHHHHHHHHH
Q 013948 148 SQVDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL--CGNN----AVYYSNRAAA 221 (433)
Q Consensus 148 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~----~~~~~~la~~ 221 (433)
+++++-++-++..|+.-.-+ ..-.-...+..++.-|.++++|++|++.+...... .-.. .++...+-.+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~-----~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvev 84 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPE-----EQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDT 84 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCc-----cccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHH
Confidence 45666666666666642110 00111345666777888999999999977654322 1112 2333333455
Q ss_pred HHHhhc--HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 013948 222 YTQIHQ--YAEAVRDCLKSIDIDPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREER 298 (433)
Q Consensus 222 ~~~~~~--~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 298 (433)
|.+.+- -++.+.-+-+.++.-|. .+. +..=..+|+. |-.+.=...-.++..+..+|..++..+++.
T Consensus 85 y~~~~~~~~~~~~~rL~~L~~~~~~~~p~----------r~~fi~~ai~-WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 85 FRQAGQRVDGASRGKLLGCLRLFQPGEPV----------RKRFVKEMID-WSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHTCCCCHHHHHHHHHHHTTSCTTCHH----------HHHHHHHHHH-HHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCCCcH----------HHHHHHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 655441 13344444444554443 222 0111234555 544421223368999999999999999999
Q ss_pred HhcccccccCCCc----cchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCCChhhHHHHHhh
Q 013948 299 QRTGWDQTTSSSH----YSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQPSQSRQGEDSNV 372 (433)
Q Consensus 299 ~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g~~~~A~~~~~~ 372 (433)
+|..++.-..... ......|+. ...| .....+..++..-|...++...|...+..
T Consensus 154 ~Ae~H~ilg~~~s~~~~a~mL~ew~~--------------~~~~-----~e~dlfiaRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 154 AAEKHLVLGTKESPEVLARMEYEWYK--------------QDES-----HTAPLYCARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHHHH--------------TSCG-----GGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHH--------------hcCC-----ccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888765222110 011122221 2235 66777888885668888999999875544
No 308
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.85 E-value=75 Score=24.10 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHH
Q 013948 149 QVDKASRIFHDAINE 163 (433)
Q Consensus 149 ~~~~A~~~~~~al~~ 163 (433)
-++.|+.++.+|++.
T Consensus 14 ~l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 14 NLQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666666554
No 309
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.34 E-value=58 Score=24.67 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=12.0
Q ss_pred hcHHHHHHHHHHHHhcCC
Q 013948 226 HQYAEAVRDCLKSIDIDP 243 (433)
Q Consensus 226 ~~~~~A~~~~~~al~~~p 243 (433)
..+++|+.+..++|.++.
T Consensus 17 ~~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 346677777777777653
No 310
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.43 E-value=54 Score=22.90 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 180 IFKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 180 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
-...+|+-+...|+|+.|+.+|+.++..
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4556777888889999999999888764
No 311
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=27.24 E-value=1.4e+02 Score=28.46 Aligned_cols=30 Identities=7% Similarity=-0.144 Sum_probs=24.7
Q ss_pred cHHHHHHHHhhcccccCC--ChhhHHHHHhhhc
Q 013948 344 DIASMLMNMASNMPQAQP--SQSRQGEDSNVSG 374 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g--~~~~A~~~~~~al 374 (433)
..+++++.+| .++..+| +..+|...+.+..
T Consensus 333 R~aEv~Li~A-EA~~~~gg~~~~~A~~~lN~vR 364 (454)
T 3myv_A 333 RLSEVYLIAA-EAGCKLGGDAAVQGLGYLNEIV 364 (454)
T ss_dssp EHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHH
Confidence 5688999999 8988888 8888988776544
No 312
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=26.84 E-value=1.1e+02 Score=29.25 Aligned_cols=30 Identities=13% Similarity=-0.021 Sum_probs=24.8
Q ss_pred cHHHHHHHHhhcccccCC-ChhhHHHHHhhhc
Q 013948 344 DIASMLMNMASNMPQAQP-SQSRQGEDSNVSG 374 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g-~~~~A~~~~~~al 374 (433)
..+++++..| .++.++| +..+|...+.+..
T Consensus 319 R~aEvyLi~A-EA~~~~gg~~~~A~~~lN~vR 349 (460)
T 3snx_A 319 RSAEMYLIEA-EAKVRDGVALDQAVAPLNTLR 349 (460)
T ss_dssp EHHHHHHHHH-HHHHHTTCCHHHHTHHHHHHH
T ss_pred EHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHH
Confidence 5788999999 8988888 8899988776644
No 313
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.09 E-value=61 Score=22.65 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 249 YSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 249 ~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
...+|.=|...|+|+.|+. +|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~-yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMV-YYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHH-HHHHHHH
Confidence 4557778888899999998 8888875
No 314
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=26.06 E-value=1.5e+02 Score=28.29 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=25.2
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
..+++++.+| .++..+|+..+|...+.+..
T Consensus 336 R~aEv~Li~A-EA~~~~g~~~~A~~~lN~vR 365 (461)
T 3kez_A 336 RLSEAYLNAA-EAAVQTGDNAKAVKYLNSIV 365 (461)
T ss_dssp EHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred EHHHHHHHHH-HHHHHHCCchHHHHHHHHHH
Confidence 5688999999 99999999999988876543
No 315
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=25.47 E-value=1.4e+02 Score=28.99 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=23.4
Q ss_pred cHHHHHHHHhhcccccCCChhhHHHHHhhhc
Q 013948 344 DIASMLMNMASNMPQAQPSQSRQGEDSNVSG 374 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~~~A~~~~~~al 374 (433)
..+++++..| .++..+|. .+|+..+.+..
T Consensus 345 R~aEv~Li~A-EA~~~~g~-~~A~~~lN~vR 373 (495)
T 3lew_A 345 RVAEIYLINA-EAKAHLND-PDAINKLNDLK 373 (495)
T ss_dssp EHHHHHHHHH-HHHHHTTC-TTHHHHHHHHH
T ss_pred EHHHHHHHHH-HHHhhcCC-HHHHHHHHHHH
Confidence 4588999999 89888898 88887776543
No 316
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=24.24 E-value=1.4e+02 Score=28.49 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
++.-++-++.|+...|... ........-++..+|++++..++|++|+...+++|..
T Consensus 164 y~~I~~DL~~A~~~L~~~~--~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEK--NNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSC--CTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccc--cCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 5555666777777666432 2234556678889999999999999999999999863
No 317
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=24.06 E-value=2e+02 Score=20.57 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=13.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 013948 181 FKCQGNRVMQSQQYSDAIELYSFAIA 206 (433)
Q Consensus 181 ~~~lg~~~~~~~~~~~A~~~~~~al~ 206 (433)
+...|.-.-..|+|++|+.+|..+++
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444555555555555555543
No 318
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.32 E-value=4.5e+02 Score=24.35 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=63.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhc----C-----------CC--HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc------
Q 013948 185 GNRVMQSQQYSDAIELYSFAIALC----G-----------NN--AVYYSNRAAAYTQIHQYAEAVRDCLKSIDI------ 241 (433)
Q Consensus 185 g~~~~~~~~~~~A~~~~~~al~~~----p-----------~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 241 (433)
..+.....+.++|++.+.+....- . .. ..+...++..|...++.++|...++++-..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 344556788999999988763221 0 01 345667888999999999999999888643
Q ss_pred -CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 013948 242 -DPN-YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQ 275 (433)
Q Consensus 242 -~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~ 275 (433)
+|. +...+...+..+...++|..+.. ..-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~-~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYY-TSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHh
Confidence 222 23455556777888899998888 7666664
No 319
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=22.86 E-value=3.7e+02 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHhhcCCCCC
Q 013948 35 LEGLEVARECLTEVFKLDSPS 55 (433)
Q Consensus 35 ~~~~e~A~~~~~kAl~ldP~~ 55 (433)
.++|++.+++.++..+.++.-
T Consensus 17 aeRyddM~~~Mk~v~~~~~eL 37 (248)
T 3uzd_A 17 AERYDDMAAAMKNVTELNEPL 37 (248)
T ss_dssp TTCHHHHHHHHHHHHTTCSCC
T ss_pred hcCHHHHHHHHHHHHhcCCcC
Confidence 578999999999999988754
No 320
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=22.70 E-value=0.51 Score=45.94 Aligned_cols=122 Identities=13% Similarity=0.052 Sum_probs=89.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013948 217 NRAAAYTQIHQYAEAVRDCLKSIDIDPNYSKAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLRE 296 (433)
Q Consensus 217 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 296 (433)
..|.=++..|.|+.|.-.|..+ + -|..|+.++..+|+|..|++ +.++ .+++..|.....++...++
T Consensus 149 ~VGDrcf~e~lYeAAKilys~i----s----N~akLAstLV~L~~yq~AVd-aArK-----Ans~ktWKeV~~ACvd~~E 214 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEYQAAVD-GARK-----ANSTRTWKEVCFACVDGKE 214 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGS----C----CCTTTSSSSSSCSGGGSSTT-TTTT-----CCSSCSHHHHTHHHHHSCT
T ss_pred HHHHHHHHccCHHHHHHHHHhC----c----cHHHHHHHHHHHHHHHHHHH-HHHh-----cCChhHHHHHHHHHhCchH
Confidence 4566666777777665555432 2 24457888888899888888 6555 3677888888888888888
Q ss_pred HHHhcccccccCCCccch--hhhhhhcCCCCCCCCCcc--cccCCCCCCCccHHHHHHHHhhcccc
Q 013948 297 ERQRTGWDQTTSSSHYSQ--ESNQSTGGFRSHGTPPSF--TMPFNTNALPTDIASMLMNMASNMPQ 358 (433)
Q Consensus 297 ~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~--al~~~p~~~~~~~~~a~~~la~~~~~ 358 (433)
+.-|..+.......+... ....|-..|.|++-+..+ ++.++- -+...+..|| .+|.
T Consensus 215 frLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglEr-----AHmGmFTELa-ILYs 274 (624)
T 3lvg_A 215 FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER-----AHMGMFTELA-ILYS 274 (624)
T ss_dssp TTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT-----CCHHHHHHHH-HHHH
T ss_pred HHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc-----hhHHHHHHHH-HHHH
Confidence 887877766655443332 357788999999999999 888887 7888888898 6665
No 321
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=22.67 E-value=1.9e+02 Score=27.94 Aligned_cols=31 Identities=16% Similarity=-0.001 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 013948 245 YSKAYSRLGLAYYAQGNYNDAIEKGFKKALQL 276 (433)
Q Consensus 245 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~al~~ 276 (433)
...++..+|.+|...++|++|+. +.++++..
T Consensus 202 k~aA~allArvyL~~~~~~~A~~-~a~~vi~~ 232 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKT-YSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhc
Confidence 34566667777777777777777 77776654
No 322
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=22.56 E-value=18 Score=31.82 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCCCchhHHHHHHHHHHhhcC
Q 013948 31 PGVDLEGLEVARECLTEVFKL 51 (433)
Q Consensus 31 ~~~~~~~~e~A~~~~~kAl~l 51 (433)
.....++|++|+.||.+|+++
T Consensus 32 e~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 32 ELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp ---------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 334777888888888888765
No 323
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=22.02 E-value=1.7e+02 Score=28.13 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=26.5
Q ss_pred cHHHHHHHHhhcccccCCCh-hhHHHHHhhhcC
Q 013948 344 DIASMLMNMASNMPQAQPSQ-SRQGEDSNVSGS 375 (433)
Q Consensus 344 ~~~~a~~~la~~~~~~~g~~-~~A~~~~~~al~ 375 (433)
..+++++.+| .++..+|+. .+|+..+.+...
T Consensus 355 R~aEvyLi~A-EA~~~~g~~~~~A~~~lN~vR~ 386 (477)
T 3mcx_A 355 RLSEVYLNAA-EAGLKKGTDIEEAQGYLNDIIS 386 (477)
T ss_dssp EHHHHHHHHH-HHHHHHTSSHHHHHHHHHHHHT
T ss_pred EHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHH
Confidence 5688999999 899999998 899988887665
No 324
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=21.92 E-value=1.6e+02 Score=28.17 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 150 VDKASRIFHDAINEMEKSGAHAYNQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
++.-++-++.|+...|... ........-++..+|++++..|+|++|+...+++|..
T Consensus 170 y~~I~~DL~~A~~~L~~~~--~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDF--NKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSC--CTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccc--CCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4555666677777666432 2234566778889999999999999999999998863
No 325
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.87 E-value=1.7e+02 Score=28.10 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccc-------------chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 013948 150 VDKASRIFHDAINEMEKSGAHAY-------------NQKNLAEIFKCQGNRVMQSQQYSDAIELYSFAIAL 207 (433)
Q Consensus 150 ~~~A~~~~~~al~~~p~~~~~~~-------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 207 (433)
++.-++-++.|+...|....... ......-++..+|++++..++|++|+...+++|..
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 44555556667666664321100 14556678888899999899999999999888864
No 326
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=20.96 E-value=2.3e+02 Score=30.05 Aligned_cols=215 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhHHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcH
Q 013948 151 DKASRIFHDAINEMEKSGAHAYNQKNLAE--IFKCQGNRVMQSQQYSDAIELYSFAIALCGNNAVYYSNRAAAYTQIHQY 228 (433)
Q Consensus 151 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 228 (433)
+++.+.+...+..+... .. +-+.+|.++...|+-+.....+..+.+-..+...-...+|..+...|+.
T Consensus 471 eev~e~L~~~L~dd~~~----------~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 471 IEVYEALKEVLYNDSAT----------SGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHHHHHHHHHHTCCHH----------HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHHHHHhcCCHH----------HHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Q ss_pred HHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 013948 229 AEAVRDCLKSIDIDPNYS--KAYSRLGLAYYAQGNYNDAIEKGFKKALQLDPNNEAVKENIRMAEQKLREERQRTGWDQT 306 (433)
Q Consensus 229 ~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (433)
+.+-...+.......... .+-+.+|.+|...|+...-.. .+..+..-..++..-.-.++......|+.+.......
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~-LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~- 618 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKR-LLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ- 618 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHH-HHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH-
Q ss_pred cCCCccchhhhhhhcCCCCCCCCCcccccCCCCCCCccHHHHHHHHhhcccccCC---ChhhHHHHHhhhcCCCCCcccc
Q 013948 307 TSSSHYSQESNQSTGGFRSHGTPPSFTMPFNTNALPTDIASMLMNMASNMPQAQP---SQSRQGEDSNVSGSDEPGIRIG 383 (433)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~A~~~~al~~~p~~~~~~~~~a~~~la~~~~~~~g---~~~~A~~~~~~al~l~P~~~~~ 383 (433)
+-.+- .++.+.+..+ .++...+ -..+++....+... |+++.+.
T Consensus 619 ---------------------------~L~~~-----~d~~VR~gAa-lALGli~aGn~~~~aid~L~~L~~-D~d~~Vr 664 (963)
T 4ady_A 619 ---------------------------LLSKS-----HNAHVRCGTA-FALGIACAGKGLQSAIDVLDPLTK-DPVDFVR 664 (963)
T ss_dssp ---------------------------TGGGC-----SCHHHHHHHH-HHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHH
T ss_pred ---------------------------HHHhc-----CCHHHHHHHH-HHHHHhccCCCcHHHHHHHHHHcc-CCCHHHH
Q ss_pred cccccccc---cCCcHH----HHHHHHHHHhhcCC
Q 013948 384 GNINLNFG---ENMPED----ITGALRSMMEMFSG 411 (433)
Q Consensus 384 ~~~~~~l~---~~~~~~----~~~a~~~~~~~~~~ 411 (433)
.+..+.|+ ..+.+. +...++.+.+.+..
T Consensus 665 q~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 665 QAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp HHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Done!