BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013949
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/356 (44%), Positives = 197/356 (55%), Gaps = 38/356 (10%)
Query: 72 FVGPPVSVDEALKRYPDRXXXXXXXXXXXXXXXXXXXIGALNEEEEVLQARCHYTQASVD 131
F+G PV+ DEA +P R +EEE L+ARCHY A VD
Sbjct: 9 FIGSPVAADEARSNWPKRYGRSTAAKKP--------------DEEEELKARCHYRSAKVD 54
Query: 132 GCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLV-- 189
+Y LGDD YVKA E DYI RI E FE D YF RWF+RAEDTVI L +
Sbjct: 55 NVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVD 114
Query: 190 ----DRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPH 245
D +RVFLS+ ++DN L+CI+SK KI V NMD +AK + I CDLYYDM Y++ +
Sbjct: 115 GHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAY 174
Query: 246 LTFSNI---NNESNRRDXXXXXXXXXXXXXXXPIGEPEMSLLDLYSGCGAMSTGLCIGAS 302
TF+NI N +S + +LLDLYSGCG MSTGLC+GA+
Sbjct: 175 STFANISSENGQSGSDTASGISSDDVDLETSSSMPTRTATLLDLYSGCGGMSTGLCLGAA 234
Query: 303 LSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIYDTDK 362
LSG+KL TRWA+D N AC+SLK+NHP+T+VRNE AD+FL+LLKEWA LC+ + + D D
Sbjct: 235 LSGLKLETRWAVDFNSFACQSLKYNHPQTEVRNEKADEFLALLKEWAVLCKKY-VQDVDS 293
Query: 363 VPEQSLNFMSXXXXXXXXXXXXXXXXXXXXXFEVESLTAVCYGDPNKTKKPGVYFK 418
N S F VE L +CYG ++ G+YFK
Sbjct: 294 ------NLAS------SEDQADEDSPLDKDEFVVEKLVGICYGGSDREN--GIYFK 335
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 267 bits (683), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 155/361 (42%), Positives = 195/361 (54%), Gaps = 38/361 (10%)
Query: 67 DSDLFFVGPPVSVDEALKRYPDRXXXXXXXXXXXXXXXXXXXIGALNEEEEVLQARCHYT 126
D + F+G PV+ DEA +P R +EEE L+ARCHY
Sbjct: 4 DHEPEFIGSPVAADEARSNWPKRYGRSTAAKKP--------------DEEEELKARCHYR 49
Query: 127 QASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLA 186
A VD +Y LGDD YVKA E DYI RI E FE D YF RWF+RAEDTVI L
Sbjct: 50 SAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLV 109
Query: 187 YLV------DRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMK 240
+ D +RVFLS+ ++DN L+CI+SK KI V N D +AK + I CDLYYD
Sbjct: 110 SISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNXDPKAKAQLIESCDLYYDXS 169
Query: 241 YTLPHLTFSNI---NNESNRRDXXXXXXXXXXXXXXXPIGEPEMSLLDLYSGCGAMSTGL 297
Y++ + TF+NI N +S +LLDLYSGCG STGL
Sbjct: 170 YSVAYSTFANISSENGQSGSDTASGISSDDVDLETSSSXPTRTATLLDLYSGCGGXSTGL 229
Query: 298 CIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSI 357
C+GA+LSG+KL TRWA+D N AC+SLK+NHP+T+VRNE AD+FL+LLKEWA LC+ + +
Sbjct: 230 CLGAALSGLKLETRWAVDFNSFACQSLKYNHPQTEVRNEKADEFLALLKEWAVLCKKY-V 288
Query: 358 YDTDKVPEQSLNFMSXXXXXXXXXXXXXXXXXXXXXFEVESLTAVCYGDPNKTKKPGVYF 417
D D N S F VE L +CYG ++ G+YF
Sbjct: 289 QDVDS------NLAS------SEDQADEDSPLDKDEFVVEKLVGICYGGSDREN--GIYF 334
Query: 418 K 418
K
Sbjct: 335 K 335
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 109 IGALNEEEEVLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVD-YIARIVELFESVDGEP 167
I L + ++ + R +Y + S+D + +GD V ++ + Y+AR+ L+E +G+
Sbjct: 444 ISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQM 503
Query: 168 YFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
F A WF DTV L D +FL ++ L+ I SK K+
Sbjct: 504 MFHAHWFCAGTDTV---LGATSDPLELFLVGECENMQLSYIHSKVKV 547
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 338
P++ LD++SGCG +S G +G+ T WAI++ A ++ + N+P T V E
Sbjct: 850 PKLRTLDVFSGCGGLSEGF----HQAGIS-ETLWAIEMWDPAAQAFRLNNPGTTVFTEDC 904
Query: 339 DDFLSLL 345
+ L L+
Sbjct: 905 NVLLKLV 911
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 109 IGALNEEEEVLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVD-YIARIVELFESVDGEP 167
I L + ++ + R +Y + S+D + +GD V ++ + Y+AR+ L+E +G+
Sbjct: 86 ISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQM 145
Query: 168 YFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
F A WF DTV L D +FL ++ L+ I SK K+
Sbjct: 146 MFHAHWFCAGTDTV---LGATSDPLELFLVGECENMQLSYIHSKVKV 189
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 338
P++ LD++SGCG +S G +G+ T WAI++ A ++ + N+P T V E
Sbjct: 492 PKLRTLDVFSGCGGLSEGF----HQAGIS-ETLWAIEMWDPAAQAFRLNNPGTTVFTEDC 546
Query: 339 DDFLSLL 345
+ L L+
Sbjct: 547 NVLLKLV 553
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 109 IGALNEEEEVLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVD-YIARIVELFESVDGEP 167
I L + ++ + R +Y + S+D + +GD V ++ + Y+AR+ L+E +G+
Sbjct: 5 ISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQM 64
Query: 168 YFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
F A WF DTV L D +FL ++ L+ I SK K+
Sbjct: 65 MFHAHWFCAGTDTV---LGATSDPLELFLVGECENMQLSYIHSKVKV 108
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 338
P++ LD++SGCG +S G +G+ T WAI++ A ++ + N+P T V E
Sbjct: 411 PKLRTLDVFSGCGGLSEGF----HQAGIS-ETLWAIEMWDPAAQAFRLNNPGTTVFTEDC 465
Query: 339 DDFLSLL 345
+ L L+
Sbjct: 466 NVLLKLV 472
>pdb|1W4S|A Chain A, Crystal Structure Of The Proximal Bah Domain Of Polybromo
Length = 174
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 122 RCHYTQASVDGCLYNLGDDAYVK-AEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDT 180
R + S +Y++GD YV+ AE +I I L+E GE + WFYR +T
Sbjct: 14 RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 73
Query: 181 VIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDL 223
++ K VF SD + P++ I+ K + V L
Sbjct: 74 FHLATRKFLE-KEVFKSDYYNKVPVSKILGKCVVMFVKEYFKL 115
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 338
P++ LD++SGCG +S G +G+ T WAI++ A ++ + N+P + V E
Sbjct: 493 PKLRTLDVFSGCGGLSEGF----HQAGIS-DTLWAIEMWDPAAQAFRLNNPGSTVFTEDC 547
Query: 339 DDFLSLL 345
+ L L+
Sbjct: 548 NILLKLV 554
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 109 IGALNEEEEVLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVD-YIARIVELFESVDGEP 167
I + E + + +Y + +D +GD V ++ + Y+AR+ L+E
Sbjct: 87 ISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQ 146
Query: 168 YFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
F A WF DTV L D +FL D +D L+ I SK K+
Sbjct: 147 MFHAHWFCAGTDTV---LGATSDPLELFLVDECEDMQLSYIHSKVKV 190
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 338
P++ LD++SGCG +S G +G+ T WAI++ A ++ + N+P + V E
Sbjct: 539 PKLRTLDVFSGCGGLSEGF----HQAGIS-DTLWAIEMWDPAAQAFRLNNPGSTVFTEDC 593
Query: 339 DDFLSLL 345
+ L L+
Sbjct: 594 NILLKLV 600
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 122 RCHYTQASVDGCLYNLGDDAYVKAEEGAVD-YIARIVELFESVDGEPYFKARWFYRAEDT 180
+ +Y + +D +GD V ++ + Y+AR+ L+E F A WF DT
Sbjct: 146 KSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDT 205
Query: 181 VIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
V L D +FL D +D L+ I SK K+
Sbjct: 206 V---LGATSDPLELFLVDECEDMQLSYIHSKVKV 236
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 278 EPEMSLLDLYSGCGAMSTGL---CIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKV 333
EP + +L+LYSG G M L CI A + AID+N A + K+N P T++
Sbjct: 1 EP-LRVLELYSGVGGMHHALRESCIPAQVVA-------AIDVNTVANEVYKYNFPHTQL 51
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPET 331
++++DL+SG G GL +GA+ +G + + A++I+ HA + N P +
Sbjct: 3 LNVIDLFSGVG----GLSLGAARAGFDV--KMAVEIDQHAINTHAINFPRS 47
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 283 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFL 342
+L+LYSG G M SG+ A+DIN A K N PET + N
Sbjct: 6 ILELYSGIGGMHCAW----KESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLT 61
Query: 343 -SLLKEW 348
++K+W
Sbjct: 62 PQVIKKW 68
>pdb|2HXV|A Chain A, Crystal Structure Of A
Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
(Tm1828) From Thermotoga Maritima At 1.80 A Resolution
Length = 360
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 304 SGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAK-LCQYFSIYDTDK 362
SG+K V D NP + ++ K RN + +L+E K LC++F Y T K
Sbjct: 105 SGIKTVVIGTRDPNPVSGNGVE------KFRNHGIEVIEGVLEEEVKKLCEFFITYVTKK 158
Query: 363 VPEQSLNFMS 372
P +L + S
Sbjct: 159 RPFVALKYAS 168
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 140 DAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVD 190
D ++K EEG+ +I E+ VD + YF EDT + DLAY+ D
Sbjct: 26 DKFLKWEEGSSGFI----EILLRVDPKGYFLYWKIEGKEDTQLLDLAYVRD 72
>pdb|4DOW|A Chain A, Structure Of Mouse Orc1 Bah Domain Bound To H4k20me2
pdb|4DOW|B Chain B, Structure Of Mouse Orc1 Bah Domain Bound To H4k20me2
Length = 163
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 137 LGDDAYVKAEEGAVDYIARIVELFES---VDGEPYFKARWFYRAEDTVIKDLAYLVDR-- 191
+G ++ E+ Y+A+++ELF++ V + + +WF R + + +L+ R
Sbjct: 41 VGQFVLIQGEDNKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSK-RHLLGRSP 99
Query: 192 --KRVFLSDVED-DNPLNC--IVSKAKIAEVAANMDLEAKQKN 229
+ +F D D DN +N I+ ++ +A + QK+
Sbjct: 100 PAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKS 142
>pdb|2L47|A Chain A, Solution Structure Of The Plyg Catalytic Domain
Length = 165
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 129 SVDGCLYNLGDDAYVKAEEGAVDYIARIVELF 160
SV+ C G D Y KAE+ AVD + +++ ++
Sbjct: 88 SVEICYSKSGGDRYYKAEDNAVDVVRQLMSMY 119
>pdb|4DOV|A Chain A, Structure Of Free Mouse Orc1 Bah Domain
pdb|4DOV|C Chain C, Structure Of Free Mouse Orc1 Bah Domain
Length = 163
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 137 LGDDAYVKAEEGAVDYIARIVELFES---VDGEPYFKARWFYRAEDTVIKDLAYLVDR-- 191
+G ++ E+ Y+A+++ELF++ V + + +WF R + + +L+ R
Sbjct: 41 VGQFVLIQGEDNKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSK-RHLLGRSP 99
Query: 192 --KRVFLSDVED-DNPLNC--IVSKAKIAEVAANMDLEAKQKN 229
+ +F D D DN +N I+ ++ +A + QK+
Sbjct: 100 PAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKS 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,341,474
Number of Sequences: 62578
Number of extensions: 342387
Number of successful extensions: 693
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 30
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)