BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013949
(433 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
Length = 912
Score = 318 bits (816), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 174/358 (48%), Positives = 224/358 (62%), Gaps = 42/358 (11%)
Query: 72 FVGPPVSVDEALKRYPDRYKYSSKGHKKKKVAAGVSSIGALNEEEEVLQARCHYTQASVD 131
F+G PV+ DEA +P RY S+ K +EEE L+ARCHY A VD
Sbjct: 137 FIGSPVAADEARSNWPKRYGRSTAAKKP--------------DEEEELKARCHYRSAKVD 182
Query: 132 GCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLV-- 189
+Y LGDD YVKA E DYI RI E FE D YF RWF+RAEDTVI L +
Sbjct: 183 NVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCHYFTCRWFFRAEDTVINSLVSISVD 242
Query: 190 ----DRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPH 245
D +RVFLS+ ++DN L+CI+SK KI V NMD +AK + I CDLYYDM Y++ +
Sbjct: 243 GHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLIESCDLYYDMSYSVAY 302
Query: 246 LTFSNINNESNRRDSDASSTISS-----ETGSNSPIGEPEMSLLDLYSGCGAMSTGLCIG 300
TF+NI++E+ + SD +S ISS ET S+ P +LLDLYSGCG MSTGLC+G
Sbjct: 303 STFANISSENGQSGSDTASGISSDDVDLETSSSMPTRT--ATLLDLYSGCGGMSTGLCLG 360
Query: 301 ASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIYDT 360
A+LSG+KL TRWA+D N AC+SLK+NHP+T+VRNE AD+FL+LLKEWA LC+ + + D
Sbjct: 361 AALSGLKLETRWAVDFNSFACQSLKYNHPQTEVRNEKADEFLALLKEWAVLCKKY-VQDV 419
Query: 361 DKVPEQSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVCYGDPNKTKKPGVYFK 418
D N S E++ D+DS + +EF VE L +CYG ++ G+YFK
Sbjct: 420 DS------NLAS------SEDQADEDSPLDKDEFVVEKLVGICYGGSDREN--GIYFK 463
>sp|Q8LPU5|CMT3_MAIZE DNA (cytosine-5)-methyltransferase 3 OS=Zea mays GN=DMT105 PE=2
SV=1
Length = 915
Score = 310 bits (793), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 173/374 (46%), Positives = 230/374 (61%), Gaps = 42/374 (11%)
Query: 56 RVKKKTQKNKPDSDLFFVGPPVSVDEALKRYPDRYKYSSKGHKKKKVAAGVSSIGALNEE 115
RV +++ D F+G PV+ EA +P RY+ S+ +K EE
Sbjct: 125 RVGRRSAAASGDHVPEFIGSPVAAAEAHSNWPKRYERSTAANKP--------------EE 170
Query: 116 EEVLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFY 175
++ L+ARCHY A VD +Y LGDD YVKA E DYI RI E FE D YF RWF+
Sbjct: 171 DDELKARCHYRSAKVDNIVYCLGDDVYVKAGENEADYIGRITEFFEGTDRCHYFTCRWFF 230
Query: 176 RAEDTVIKDLAYL------VDRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKN 229
RAEDTVI L + D +RVFLS+ ++DN L+CI+SK KI V NMD +AK +
Sbjct: 231 RAEDTVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQL 290
Query: 230 IPPCDLYYDMKYTLPHLTFSNINNESNRRDSDASSTISS-----ETGSNSPIGEPEMSLL 284
I CDLYYDM Y++ + TF+NI++E+ + S+ +S ISS ET SN P E +LL
Sbjct: 291 IEHCDLYYDMSYSVAYSTFANISSENGQSGSETASGISSDDAGLETSSNMP--ERTATLL 348
Query: 285 DLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSL 344
DLYSGCG MSTGLC+GA+LSG+KL TRWA+D+N AC+SLK+NHP+T+VRNE AD+FL+L
Sbjct: 349 DLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHPQTEVRNEKADEFLAL 408
Query: 345 LKEWAKLCQYFSIYDTDKVPEQSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVCY 404
LKEWA LC+ + D D + ++ E++E+ + D D EF V+ L + Y
Sbjct: 409 LKEWAVLCEKYVHQDVD-------SNLAGSEDQEDADTLDKD------EFVVQKLIGIRY 455
Query: 405 GDPNKTKKPGVYFK 418
+ K GVYFK
Sbjct: 456 DGTGRKK--GVYFK 467
>sp|Q9ARI6|CMT2_MAIZE DNA (cytosine-5)-methyltransferase 2 OS=Zea mays GN=ZMET5 PE=2 SV=1
Length = 915
Score = 309 bits (792), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 173/374 (46%), Positives = 229/374 (61%), Gaps = 42/374 (11%)
Query: 56 RVKKKTQKNKPDSDLFFVGPPVSVDEALKRYPDRYKYSSKGHKKKKVAAGVSSIGALNEE 115
RV +++ D F+G PV EA +P RY+ S+ +K EE
Sbjct: 125 RVGRRSAAASGDHVPEFIGSPVGAAEAHSNWPKRYERSTAANKP--------------EE 170
Query: 116 EEVLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFY 175
++ L+ARCHY A VD +Y LGDD YVKA E DYI RI E FE D YF RWF+
Sbjct: 171 DDELKARCHYRSAKVDNIVYCLGDDVYVKAGENEADYIGRITEFFEGTDRCHYFTCRWFF 230
Query: 176 RAEDTVIKDLAYL------VDRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKN 229
RAEDTVI L + D +RVFLS+ ++DN L+CI+SK KI V NMD +AK +
Sbjct: 231 RAEDTVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQL 290
Query: 230 IPPCDLYYDMKYTLPHLTFSNINNESNRRDSDASSTISS-----ETGSNSPIGEPEMSLL 284
I CDLYYDM Y++ + TF+NI++E+ + S+ +S ISS ET SN P E +LL
Sbjct: 291 IEHCDLYYDMSYSVAYSTFANISSENGQSGSETASGISSDDAGLETSSNMP--ERTATLL 348
Query: 285 DLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSL 344
DLYSGCG MSTGLC+GA+LSG+KL TRWA+D+N AC+SLK+NHP+T+VRNE AD+FL+L
Sbjct: 349 DLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSLKYNHPQTEVRNEKADEFLAL 408
Query: 345 LKEWAKLCQYFSIYDTDKVPEQSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVCY 404
LKEWA LC+ + D D + ++ E++E+ + D D EF V+ L + Y
Sbjct: 409 LKEWAVLCEKYVHQDVD-------SNLAGSEDQEDADTLDKD------EFVVQKLIGIRY 455
Query: 405 GDPNKTKKPGVYFK 418
+ K GVYFK
Sbjct: 456 DGTGRKK--GVYFK 467
>sp|O49139|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis
thaliana GN=CMT1 PE=5 SV=2
Length = 791
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 167/355 (47%), Positives = 233/355 (65%), Gaps = 8/355 (2%)
Query: 59 KKTQKNKPDSDLFFVGPPVSVDEALKRYPDRYKYSSKGHKKKKVAAGVSSIGALNEEEEV 118
K+ ++ +P+SDL F G P+SV E+ R+P RY+ SK K + ++ G E+EE+
Sbjct: 6 KQKKRAEPESDLCFAGKPMSVVESTIRWPHRYQ--SKKTKLQAPTKKPANKGGKKEDEEI 63
Query: 119 L-QARCHYTQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRA 177
+ QA+CH+ +A VDG L NL DD YV G + +IA+++ELFE+ DG PY + RW+YR
Sbjct: 64 IKQAKCHFDKALVDGVLINLNDDVYVTGLPGKLKFIAKVIELFEADDGVPYCRFRWYYRP 123
Query: 178 EDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVA-ANMDLEAKQKNIPPCDLY 236
EDT+I+ ++LV KRVFLS+ E+DNPL CI SK IA+V + +Q+ IPPCD Y
Sbjct: 124 EDTLIERFSHLVQPKRVFLSNDENDNPLTCIWSKVNIAKVPLPKITSRIEQRVIPPCDYY 183
Query: 237 YDMKYTLPHLTFSNINNESNRRDSDASSTISSETGSNSPIGEPEMSLLDLYSGCGAMSTG 296
YDMKY +P+L F++ + D+ +S + S + + E LLDLYSGCGAMSTG
Sbjct: 184 YDMKYEVPYLNFTS---ADDGSDASSSLSSDSALNCFENLHKDEKFLLDLYSGCGAMSTG 240
Query: 297 LCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAKLCQYFS 356
C+GAS+SGVKL+T+W++DIN AC SLK NHPET+VRNEAA+DFL+LLKEW +LC+ FS
Sbjct: 241 FCMGASISGVKLITKWSVDINKFACDSLKLNHPETEVRNEAAEDFLALLKEWKRLCEKFS 300
Query: 357 IY-DTDKVPEQSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVCYGDPNKT 410
+ T+ V S E EE ++ +E + + EFEVE + +GDP T
Sbjct: 301 LVSSTEPVESISELEDEEVEENDDIDEASTGAELEPGEFEVEKFLGIMFGDPQGT 355
>sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana
GN=CMT3 PE=1 SV=2
Length = 839
Score = 288 bits (737), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 171/399 (42%), Positives = 233/399 (58%), Gaps = 50/399 (12%)
Query: 46 VKEEPVELVTRVKKKTQKNKPDSDLFFVGPPVSVDEALKRYPDRYK----YSSKGHKKKK 101
VKEEPV +V +K + F+ P+ EA +PDRYK K +KK
Sbjct: 32 VKEEPVTVVEEGEKHVAR--------FLDEPIPESEAKSTWPDRYKPIEVQPPKASSRKK 83
Query: 102 VAAGVSSIGALNEEEEVLQARCHYTQASVD-GCLYNLGDDAYVKAEEGAVDYIARIVELF 160
+E+ E+++ARCHY +A VD +Y L DDAYV++ EG +I +I+E+F
Sbjct: 84 TKD--------DEKVEIIRARCHYRRAIVDERQIYELNDDAYVQSGEGKDPFICKIIEMF 135
Query: 161 ESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVAAN 220
E +G+ YF ARWFYR DTV+K+ L+ +KRVF S+++D N L + K I + N
Sbjct: 136 EGANGKLYFTARWFYRPSDTVMKEFEILIKKKRVFFSEIQDTNELGLLEKKLNILMIPLN 195
Query: 221 MDLEAKQKNIPP---CDLYYDMKYTLPHLTFSNINNESNRRDSDASSTISSET------G 271
E ++ IP CD + DM Y LP+ TF I E+ S+ SSTISS+T
Sbjct: 196 ---ENTKETIPATENCDFFCDMNYFLPYDTFEAIQQETMMAISE-SSTISSDTDIREGAA 251
Query: 272 SNSPIGE--------PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKS 323
+ S IGE + +LLDLYSGCGAMSTGLC+GA LSG+ LVT+WA+D+N HACKS
Sbjct: 252 AISEIGECSQETEGHKKATLLDLYSGCGAMSTGLCMGAQLSGLNLVTKWAVDMNAHACKS 311
Query: 324 LKFNHPETKVRNEAADDFLSLLKEWAKLCQYFSIYDTDKVPE----QSLNFMSEDEEEEE 379
L+ NHPET VRN A+DFL LLKEW KLC +FS+ ++ E LN + ++E+ E
Sbjct: 312 LQHNHPETNVRNMTAEDFLFLLKEWEKLCIHFSLRNSPNSEEYANLHGLNNVEDNEDVSE 371
Query: 380 EEENDDDSNVPNEEFEVESLTAVCYGDPNKTKKPGVYFK 418
E EN+DD V F V+ + + +G P K K G+Y K
Sbjct: 372 ESENEDDGEV----FTVDKIVGISFGVPKKLLKRGLYLK 406
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/375 (40%), Positives = 228/375 (60%), Gaps = 30/375 (8%)
Query: 54 VTRVKKKTQKNKPDSDLFFVGPPVSVDEALKRYPDRYKYSSKGHKKKKVAAGVSSIGALN 113
VTR + Q + S FF+G P+S +EA +R+ R++Y K K K S G +
Sbjct: 507 VTRTAVQEQNKR--SICFFIGEPLSCEEAQERW--RWRYELKERKSK-------SRGQQS 555
Query: 114 EEEE---VLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFK 170
E++E V CHY+QA VDG ++LGD AY+K EE ++ +IVE F++ DGE YF+
Sbjct: 556 EDDEDKIVANVECHYSQAKVDGHTFSLGDFAYIKGEEEET-HVGQIVEFFKTTDGESYFR 614
Query: 171 ARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNI 230
+WFYRA DT+++ A D++R+F S V +DNP++C++SK + +V+ + L+ N
Sbjct: 615 VQWFYRATDTIMERQATNHDKRRLFYSTVMNDNPVDCLISKVTVLQVSPRVGLKP---NS 671
Query: 231 PPCDLYYDMKYTLPHLTFSNINNESNRRD-----SDASSTISSETGSNSPIGEPEMSLLD 285
D Y+DM+Y + + TF + N + +D T S+E+ E+ +LD
Sbjct: 672 IKSDYYFDMEYCVEYSTFQTLRNPKTSENKLECCADVVPTESTESILKKKSFSGELPVLD 731
Query: 286 LYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLL 345
LYSGCG MSTGL +GA +SGV +VT+WA+D N ACKSLK NHP T+VRN+AA DFL LL
Sbjct: 732 LYSGCGGMSTGLSLGAKISGVDVVTKWAVDQNTAACKSLKLNHPNTQVRNDAAGDFLQLL 791
Query: 346 KEWAKLCQYFSIYDTDKVPE--QSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVC 403
KEW KLC+ + +++ D+ + +S+N +E + D + +EE+EVE L +C
Sbjct: 792 KEWDKLCKRY-VFNNDQRTDTLRSVN----STKETSGSSSSSDDDSDSEEYEVEKLVDIC 846
Query: 404 YGDPNKTKKPGVYFK 418
+GD +KT K G+ FK
Sbjct: 847 FGDHDKTGKNGLKFK 861
>sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1
PE=1 SV=1
Length = 1534
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 21/178 (11%)
Query: 170 KARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAK--- 226
K R FYR ED V + AY D + ++ S P + K ++ + ++M L +
Sbjct: 970 KVRRFYRPED-VSAEKAYASDIQELYFSQDTVVLPPGALEGKCEVRK-KSDMPLSREYPI 1027
Query: 227 QKNIPPCDLYYDM-KYTLPHL------TFSNINNES---NRRDSDASSTISSE-TGSNSP 275
+I CDL++D K +L L FS I +++ ++ S I SE P
Sbjct: 1028 SDHIFFCDLFFDTSKGSLKQLPANMKPKFSTIKDDTLLRKKKGKGVESEIESEIVKPVEP 1087
Query: 276 IGEPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKV 333
E ++ LD+++GCG +S GL A +S K WAI+ A ++ K NHPE+ V
Sbjct: 1088 PKEIRLATLDIFAGCGGLSHGLK-KAGVSDAK----WAIEYEEPAGQAFKQNHPESTV 1140
>sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica
GN=MET1A PE=2 SV=1
Length = 1527
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 170 KARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSK--AKIAEVAANMDLEAKQ 227
K R FYR +D + AY D + V+ S+ P+ I K ++ + N DL A
Sbjct: 970 KVRRFYRPDD-ISSTKAYSSDIREVYYSEDIISVPVVMIEGKCEVRLKDDLPNSDLPAVV 1028
Query: 228 KNIPPCDLYYD-----MKYTLPHLTFSNINNE--SNRRDSDASSTISSETGSNSPI-GEP 279
+++ C+ YD +K P++ + + +++++ GS+ P G+
Sbjct: 1029 EHVFCCEYLYDPANGALKQLPPNVRLVTLTRKVPASKKNKGKQICDIELGGSDKPKDGQS 1088
Query: 280 E--MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEA 337
E ++ LD+++GCG +S GL SG+ L T+WAI+ A + NHPE V E
Sbjct: 1089 ENCLATLDIFAGCGGLSEGL----QRSGLSL-TKWAIEYEEPAGDAFGENHPEAAVFVEN 1143
Query: 338 ADDFLSLL 345
+ L +
Sbjct: 1144 CNVILKAI 1151
>sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica
GN=MET1B PE=2 SV=1
Length = 1529
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 37/185 (20%)
Query: 171 ARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVA--ANMDLEAKQK 228
R FYR +D + AY+ D + V+ S+ P++ I K ++ + +N D+ +
Sbjct: 971 VRRFYRPDD-ISSAKAYVSDIREVYYSENIVKVPVDMIEGKCEVKKKIDISNSDVPVMVE 1029
Query: 229 NIPPCDLYYD-----MKYTLPHLTFSNINN---------------ESNRRDSDASSTISS 268
+ C+ +YD +K P++ ++ ES++ DSD + +S
Sbjct: 1030 HEFFCEHFYDPATGALKQLPPNVKLMSVQQKATGALKKNKGKQICESDQVDSDKCTKVSK 1089
Query: 269 ETGSNSPIGEPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328
E ++ LD+++GCG +S GL +GV T+WAI+ A ++ NH
Sbjct: 1090 EN---------RLATLDIFAGCGGLSEGL----QQAGVSF-TKWAIEYEEPAGEAFTKNH 1135
Query: 329 PETKV 333
PE V
Sbjct: 1136 PEAAV 1140
>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1
SV=5
Length = 1620
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 109 IGALNEEEEVLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVD-YIARIVELFESVDGEP 167
I L + ++ + R +Y + S+D + +GD V ++ + Y+AR+ L+E +G+
Sbjct: 734 ISWLGQPMKIEENRTYYQKVSIDEEMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQM 793
Query: 168 YFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
F A WF DTV L D +FL ++ L+ I SK K+
Sbjct: 794 MFHAHWFCAGTDTV---LGATSDPLELFLVGECENMQLSYIHSKVKV 837
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 276 IGEPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRN 335
I P++ LD++SGCG +S G +G+ T WAI++ A ++ + N+P T V
Sbjct: 1137 IKLPKLRTLDVFSGCGGLSEGF----HQAGIS-ETLWAIEMWDPAAQAFRLNNPGTTVFT 1191
Query: 336 EAADDFLSLL 345
E + L L+
Sbjct: 1192 EDCNVLLKLV 1201
>sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1
SV=1
Length = 1537
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 338
P++ LD++SGCG +S G +GV T WAI++ A ++ + N+P T V E
Sbjct: 1052 PKLRTLDVFSGCGGLSEGF----HQAGVS-ETLWAIEMWEPAAQAFRLNNPGTTVFTEDC 1106
Query: 339 DDFLSLL 345
+ L L+
Sbjct: 1107 NVLLKLV 1113
>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
GN=DNMT PE=2 SV=1
Length = 1612
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 91 KYSSKGHK-----KKKVAAGVSSIGALNEEEEVLQARCHYTQASVDGCLYNLGDDAYVKA 145
K + KG K KKK A V+ L+E EV + R +Y A +D +GD +
Sbjct: 699 KKAKKGRKLETPLKKKKRAKVT---WLDEPTEVTEERAYYKAAMLDDEKIEIGDCVLIHP 755
Query: 146 EEGAVD-YIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNP 204
++ ++AR++ +++ GE F A+WF +TV+ + + D VF D D
Sbjct: 756 DDPTKPLFMARVIYMWQESQGEMMFHAQWFVYGSETVLGETS---DPLEVFPIDECQDTY 812
Query: 205 LNCIVSKAKI 214
L + +K +
Sbjct: 813 LGSVNAKCTV 822
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAAD 339
++ LD+++GCG +S G +G+ + WAI+ A ++ + N+P + V ++ +
Sbjct: 1130 KLKCLDVFAGCGGLSEGF----HQAGI-CESSWAIEKEEPAAQAYRLNNPGSTVFSDDCN 1184
Query: 340 DFLSLLKEWAK 350
+ L L+ + K
Sbjct: 1185 ELLRLVMQGEK 1195
>sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1
PE=1 SV=2
Length = 1622
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 276 IGEPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRN 335
I P++ LD++SGCG GL G +G+ T WAI++ A ++ + N+P T V
Sbjct: 1139 IKLPKLRTLDVFSGCG----GLTEGFHQAGIS-ETLWAIEMWEPAAQAFRLNNPGTTVFT 1193
Query: 336 EAADDFLSLL 345
E + L L+
Sbjct: 1194 EDCNVLLKLV 1203
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 109 IGALNEEEEVLQARCHYTQASVDGCLYNLGDDAYVKAEEGAVD-YIARIVELFESVDGEP 167
I L E ++ + R +Y + S+D +GD V ++ + Y+AR+ L+E +G+
Sbjct: 735 ISWLGEPVKIEENRTYYWKVSIDEETLEVGDCVSVIPDDPSKPLYLARVTALWEDKNGQ- 793
Query: 168 YFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
F A WF DTV L D +FL ++ L+ I SK K+
Sbjct: 794 MFHAHWFCAGTDTV---LGATSDPLELFLVGECENMQLSYIHSKVKV 837
>sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1
Length = 1611
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 276 IGEPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRN 335
I P++ LD++SGCG +S G +G+ T WAI++ A ++ + N+P + V
Sbjct: 1131 IKLPKLRTLDVFSGCGGLSEGF----HQAGIS-ETLWAIEMWDPAAQAFRLNNPGSTVFT 1185
Query: 336 EAADDFLSLL 345
E + L L+
Sbjct: 1186 EDCNVLLKLV 1195
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 122 RCHYTQASVDGCLYNLGDDAYVKAEEGAVD-YIARIVELFESVDGEPYFKARWFYRAEDT 180
+ +Y + +D +GD V ++ + Y+AR+ L+E F A WF DT
Sbjct: 741 KSYYKKVCIDSETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDT 800
Query: 181 VIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
V L D +FL D +D L+ I SK ++
Sbjct: 801 V---LGATSDPLELFLVDECEDMQLSYIHSKVQV 831
>sp|Q90941|PB1_CHICK Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1
Length = 1633
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 122 RCHYTQASVDGCLYNLGDDAYVK-AEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDT 180
R + S +Y++GD YV+ AE +I I L+E GE + WFYR +T
Sbjct: 943 RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNET 1002
Query: 181 VIKDLAYLVDR----KRVFLSDVEDDNPLNCIVSKAKIAEV 217
+L R K VF SD + P++ I+ K + V
Sbjct: 1003 F-----HLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFV 1038
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 123 CHY-TQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTV 181
CHY Q + +GD ++K+ + RI +++ DG YF F E+T
Sbjct: 1144 CHYFEQLCYNDMWLKVGDCVFIKSHGLVRPRVGRIEKMWVR-DGAAYFFGPIFIHPEETE 1202
Query: 182 IKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
+ + +K VFLS++E+ P++CI+ K +
Sbjct: 1203 -HEPTKMFYKKEVFLSNLEETCPMSCILGKCAV 1234
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1
SV=2
Length = 1616
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 276 IGEPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRN 335
I P++ LD++SGCG +S G +G+ T WAI++ A ++ + N+P + V
Sbjct: 1134 IKLPKLRTLDVFSGCGGLSEGF----HQAGIS-DTLWAIEMWDPAAQAFRLNNPGSTVFT 1188
Query: 336 EAADDFLSLL 345
E + L L+
Sbjct: 1189 EDCNILLKLV 1198
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 122 RCHYTQASVDGCLYNLGDDAYVKAEEGAVD-YIARIVELFESVDGEPYFKARWFYRAEDT 180
+ +Y + +D +GD V ++ + Y+AR+ L+E F A WF DT
Sbjct: 744 KSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDT 803
Query: 181 VIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
V L D +FL D +D L+ I SK K+
Sbjct: 804 V---LGATSDPLELFLVDECEDMQLSYIHSKVKV 834
>sp|Q86U86|PB1_HUMAN Protein polybromo-1 OS=Homo sapiens GN=PBRM1 PE=1 SV=1
Length = 1689
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 103 AAGVSSIGALNEEEEVLQARCHYTQASVDGCLYNLGDDAYVK-AEEGAVDYIARIVELFE 161
AAG+S + R + S +Y++GD YV+ AE +I I L+E
Sbjct: 937 AAGLSGL-----------HRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWE 985
Query: 162 SVDGEPYFKARWFYRAEDTVIKDLAYLVDR----KRVFLSDVEDDNPLNCIVSKAKIAEV 217
GE + WFYR +T +L R K VF SD + P++ I+ K + V
Sbjct: 986 DSAGEKWLYGCWFYRPNETF-----HLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFV 1040
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 123 CHY-TQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTV 181
CHY Q + +GD ++K+ + RI +++ DG YF F E+T
Sbjct: 1145 CHYFEQLHYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVR-DGAAYFYGPIFIHPEETE 1203
Query: 182 IKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
+ + +K VFLS++E+ P+ CI+ K +
Sbjct: 1204 -HEPTKMFYKKEVFLSNLEETCPMTCILGKCAV 1235
>sp|Q8BSQ9|PB1_MOUSE Protein polybromo-1 OS=Mus musculus GN=Pbrm1 PE=1 SV=4
Length = 1634
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 103 AAGVSSIGALNEEEEVLQARCHYTQASVDGCLYNLGDDAYVK-AEEGAVDYIARIVELFE 161
++G + + L+ R + S +Y++GD YV+ AE +I I L+E
Sbjct: 934 SSGTTGLSGLH--------RTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWE 985
Query: 162 SVDGEPYFKARWFYRAEDTVIKDLAYLVDR----KRVFLSDVEDDNPLNCIVSKAKIAEV 217
GE + WFYR +T +L R K VF SD + P++ I+ K + V
Sbjct: 986 DSAGEKWLYGCWFYRPNETF-----HLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFV 1040
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 123 CHY-TQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTV 181
CHY Q + +GD ++K+ + RI +++ DG YF F E+T
Sbjct: 1145 CHYFEQLRYNDMWLKVGDCVFIKSHGLVRPRVGRIEKVWVR-DGAAYFYGPIFIHPEETE 1203
Query: 182 IKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKI 214
+ + +K VFLS++E+ P++CI+ K +
Sbjct: 1204 -HEPTKMFYKKEVFLSNLEETCPMSCILGKCAV 1235
>sp|Q80Z32|ORC1_RAT Origin recognition complex subunit 1 OS=Rattus norvegicus GN=Orc1
PE=2 SV=1
Length = 848
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 130 VDGC---LYNLGDDAYVKAEEGAVDYIARIVELFES---VDGEPYFKARWFYRAEDTVIK 183
++GC +G ++ E+ Y+A+++ELFE+ V + Y + +WF R + I
Sbjct: 38 INGCSEIHIKVGQFVLIQGEDNQKPYVAKLIELFENGSEVPPKKYARVQWFVRFCEIPIP 97
Query: 184 DLAYLVDR---KRVFL---SDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKN 229
L R + +F SD ++D + I+ ++ +A ++ QK+
Sbjct: 98 KRHLLGRRPSAQEIFWYDCSDCDNDIHVETIIGPVQVVALAPEDEIPVNQKS 149
>sp|P50196|MTE8_ECOLX Modification methylase Eco47II OS=Escherichia coli GN=eco47IIM PE=3
SV=1
Length = 417
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKV 333
++L+L++G G M+ GL A L V L +I+ HACK+L+ N PE V
Sbjct: 82 TVLELFAGAGGMALGLE-KAGLKSVLLN-----EIDSHACKTLRKNRPEWNV 127
>sp|Q9P281|BAHC1_HUMAN BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens
GN=BAHCC1 PE=1 SV=3
Length = 2608
Score = 32.7 bits (73), Expect = 6.4, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 137 LGDDA-YVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVF 195
+GD A ++ A + YI RI ++ES K +WFY E+T + + ++
Sbjct: 2486 VGDCAVFLSAGRPNLPYIGRIESMWESWGSNMVVKVKWFYHPEETKLGK-RQCDGKNALY 2544
Query: 196 LSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYY 237
S ED+N + I K ++ + +K DLYY
Sbjct: 2545 QSCHEDENDVQTISHKCQVVAREQYEQMARSRKCQDRQDLYY 2586
>sp|Q3UHR0|BAHC1_MOUSE BAH and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Bahcc1 PE=2 SV=2
Length = 2643
Score = 32.3 bits (72), Expect = 6.8, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 137 LGDDA-YVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVF 195
+GD A ++ A + YI RI L+ES K +WFY E+T + + ++
Sbjct: 2521 IGDCAVFLSAGRPNLPYIGRIESLWESWGSNMVVKVKWFYHPEETKLGKRQS-DGKNALY 2579
Query: 196 LSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYY 237
S ED+N + I K ++ + +K DLYY
Sbjct: 2580 QSCHEDENDVQTISHKCQVVGREQYEQMMRGRKYQDQQDLYY 2621
>sp|A0M8T5|CTTB2_FELCA Cortactin-binding protein 2 OS=Felis catus GN=CTTNBP2 PE=3 SV=1
Length = 1658
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 7 RTSTQVAAEESNHSKARRRKLKL--AEQQHQQQEEQREDEEVKEEPVELV 54
R STQ+AA ES K KL+L EQ+HQ+ + E+E K + V L+
Sbjct: 124 RMSTQLAAAESRQKKLEMEKLQLQAVEQEHQKLAARLEEERGKNKHVVLM 173
>sp|Q07E28|CTTB2_NEONE Cortactin-binding protein 2 OS=Neofelis nebulosa GN=CTTNBP2 PE=3
SV=1
Length = 1658
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 7 RTSTQVAAEESNHSKARRRKLKL--AEQQHQQQEEQREDEEVKEEPVELV 54
R STQ+AA ES K KL+L EQ+HQ+ + E+E K + V L+
Sbjct: 124 RMSTQLAAAESRQKKLEMEKLQLQAVEQEHQKLAARLEEERGKNKHVVLM 173
>sp|A1X157|CTTB2_ECHTE Cortactin-binding protein 2 OS=Echinops telfairi GN=CTTNBP2 PE=3
SV=1
Length = 1666
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 7 RTSTQVAAEESNHSKARRRKLKL--AEQQHQQQEEQREDEEVKEEPVELV 54
R STQ+AA ES K KL+L EQ+H+ + E+E VK + V L+
Sbjct: 124 RMSTQLAAAESRQKKLEMEKLQLQTLEQEHKTLAARLEEERVKNKHVVLM 173
>sp|Q07E15|CTTB2_MUSPF Cortactin-binding protein 2 OS=Mustela putorius furo GN=CTTNBP2
PE=3 SV=1
Length = 1645
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 7 RTSTQVAAEESNHSKARRRKLKLA--EQQHQQQEEQREDEEVKEEPVELV 54
R STQ+AA ES K KL+L EQ+H+Q + E+E K + V L+
Sbjct: 124 RMSTQLAAAESRQKKLEMEKLQLQGLEQEHKQLAARLEEERGKNKHVVLM 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,021,616
Number of Sequences: 539616
Number of extensions: 7333422
Number of successful extensions: 84622
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 257
Number of HSP's that attempted gapping in prelim test: 75017
Number of HSP's gapped (non-prelim): 7637
length of query: 433
length of database: 191,569,459
effective HSP length: 120
effective length of query: 313
effective length of database: 126,815,539
effective search space: 39693263707
effective search space used: 39693263707
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)