Query 013949
Match_columns 433
No_of_seqs 275 out of 1846
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:00:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04716 BAH_plantDCM_I BAH, or 100.0 4.6E-33 1E-37 242.9 13.2 122 132-253 1-122 (122)
2 cd04708 BAH_plantDCM_II BAH, o 100.0 9.6E-33 2.1E-37 258.0 13.8 163 128-293 1-202 (202)
3 COG0270 Dcm Site-specific DNA 100.0 2.9E-29 6.2E-34 253.3 4.8 139 279-431 2-155 (328)
4 PF00145 DNA_methylase: C-5 cy 99.9 2.2E-29 4.7E-34 249.5 0.9 136 281-431 1-150 (335)
5 cd04713 BAH_plant_3 BAH, or Br 99.9 3.8E-27 8.2E-32 212.1 14.1 131 120-253 6-138 (146)
6 cd04760 BAH_Dnmt1_I BAH, or Br 99.9 7.8E-27 1.7E-31 203.2 11.0 115 132-249 1-124 (124)
7 TIGR00675 dcm DNA-methyltransf 99.9 3.2E-27 6.9E-32 237.3 7.0 136 283-432 1-149 (315)
8 cd00315 Cyt_C5_DNA_methylase C 99.9 1.3E-26 2.7E-31 228.8 6.9 137 281-431 1-151 (275)
9 PRK10458 DNA cytosine methylas 99.9 1.4E-26 3.1E-31 242.7 6.3 140 279-431 87-275 (467)
10 cd04710 BAH_fungalPHD BAH, or 99.9 1.7E-25 3.8E-30 198.6 12.1 117 128-249 5-134 (135)
11 cd04709 BAH_MTA BAH, or Bromo 99.9 7.8E-25 1.7E-29 200.0 12.5 123 132-256 1-144 (164)
12 PF01426 BAH: BAH domain; Int 99.9 1.2E-24 2.5E-29 187.2 11.0 116 133-252 1-119 (119)
13 cd04370 BAH BAH, or Bromo Adja 99.9 3.8E-24 8.1E-29 183.9 11.7 119 132-251 1-122 (123)
14 smart00439 BAH Bromo adjacent 99.9 4.5E-24 9.7E-29 183.6 12.1 118 134-252 1-120 (120)
15 cd04714 BAH_BAHCC1 BAH, or Bro 99.9 3.3E-24 7.1E-29 187.3 10.6 114 132-246 1-117 (121)
16 cd04717 BAH_polybromo BAH, or 99.9 5.4E-24 1.2E-28 185.6 11.5 118 132-252 1-120 (121)
17 cd04715 BAH_Orc1p_like BAH, or 99.9 1.2E-23 2.6E-28 191.5 12.2 101 120-221 15-123 (159)
18 cd04712 BAH_DCM_I BAH, or Brom 99.9 1.2E-22 2.5E-27 179.6 13.6 113 131-252 2-129 (130)
19 cd04711 BAH_Dnmt1_II BAH, or B 99.9 1E-21 2.2E-26 172.3 9.2 107 147-253 23-137 (137)
20 cd04721 BAH_plant_1 BAH, or Br 99.8 5.2E-21 1.1E-25 169.1 10.1 116 128-244 1-117 (130)
21 cd04719 BAH_Orc1p_animal BAH, 99.8 2.6E-18 5.7E-23 151.1 9.7 111 133-244 2-121 (128)
22 cd04720 BAH_Orc1p_Yeast BAH, o 99.7 7.6E-17 1.7E-21 149.9 11.6 124 127-251 44-177 (179)
23 cd04718 BAH_plant_2 BAH, or Br 99.7 7.5E-18 1.6E-22 150.4 1.0 96 150-251 52-147 (148)
24 KOG1886 BAH domain proteins [T 99.5 3E-14 6.5E-19 147.0 6.8 130 119-251 34-168 (464)
25 KOG0919 C-5 cytosine-specific 99.4 3.3E-14 7.2E-19 135.6 2.4 115 279-403 2-125 (338)
26 KOG1827 Chromatin remodeling c 99.1 1.1E-10 2.3E-15 125.1 5.7 132 122-255 177-310 (629)
27 KOG3554 Histone deacetylase co 98.9 1.9E-10 4.2E-15 117.6 -1.5 121 134-256 5-168 (693)
28 TIGR00095 RNA methyltransferas 96.9 0.0012 2.6E-08 61.9 4.8 58 280-343 50-113 (189)
29 PF02475 Met_10: Met-10+ like- 96.8 0.0014 3E-08 62.4 4.1 59 280-343 102-166 (200)
30 COG2263 Predicted RNA methylas 96.7 0.0016 3.5E-08 61.2 4.4 60 281-346 47-110 (198)
31 PF09445 Methyltransf_15: RNA 96.5 0.003 6.5E-08 58.2 4.1 55 282-343 2-62 (163)
32 COG2265 TrmA SAM-dependent met 96.4 0.0071 1.5E-07 63.9 7.2 99 279-402 293-401 (432)
33 TIGR02085 meth_trns_rumB 23S r 96.4 0.0042 9.2E-08 64.3 5.3 56 281-343 235-295 (374)
34 PF13659 Methyltransf_26: Meth 96.4 0.0034 7.5E-08 52.9 3.8 56 281-343 2-64 (117)
35 PF03602 Cons_hypoth95: Conser 96.4 0.0038 8.2E-08 58.5 4.2 59 279-343 42-106 (183)
36 PRK10909 rsmD 16S rRNA m(2)G96 96.4 0.0059 1.3E-07 58.0 5.5 57 280-342 54-115 (199)
37 COG2520 Predicted methyltransf 96.1 0.0055 1.2E-07 62.7 4.2 59 280-344 189-253 (341)
38 KOG3420 Predicted RNA methylas 96.1 0.0044 9.6E-08 56.1 3.0 58 279-342 48-109 (185)
39 TIGR00308 TRM1 tRNA(guanine-26 96.0 0.0076 1.6E-07 62.6 4.9 60 280-343 45-109 (374)
40 COG0742 N6-adenine-specific me 96.0 0.013 2.7E-07 55.3 5.8 61 278-344 42-108 (187)
41 PRK04338 N(2),N(2)-dimethylgua 96.0 0.011 2.3E-07 61.7 5.9 58 280-342 58-120 (382)
42 PRK05031 tRNA (uracil-5-)-meth 96.0 0.01 2.3E-07 61.2 5.7 55 282-343 209-268 (362)
43 PRK03522 rumB 23S rRNA methylu 96.0 0.01 2.2E-07 59.9 5.4 57 280-343 174-235 (315)
44 PHA03411 putative methyltransf 95.9 0.016 3.4E-07 57.8 6.1 57 281-342 66-122 (279)
45 TIGR00479 rumA 23S rRNA (uraci 95.8 0.022 4.8E-07 59.9 7.0 55 281-342 294-353 (431)
46 PRK15128 23S rRNA m(5)C1962 me 95.6 0.016 3.4E-07 60.7 5.2 58 280-343 221-285 (396)
47 TIGR02143 trmA_only tRNA (urac 95.5 0.021 4.6E-07 58.7 5.6 55 282-343 200-259 (353)
48 PF05958 tRNA_U5-meth_tr: tRNA 95.4 0.013 2.8E-07 60.2 3.8 54 282-342 199-257 (352)
49 TIGR00446 nop2p NOL1/NOP2/sun 95.4 0.034 7.5E-07 54.7 6.4 75 279-357 71-155 (264)
50 PRK11783 rlmL 23S rRNA m(2)G24 95.1 0.026 5.7E-07 63.2 5.3 58 280-343 539-603 (702)
51 TIGR03704 PrmC_rel_meth putati 95.1 0.03 6.5E-07 54.9 5.1 73 280-357 87-168 (251)
52 smart00650 rADc Ribosomal RNA 95.0 0.035 7.7E-07 50.6 4.8 55 281-342 15-72 (169)
53 PHA03412 putative methyltransf 94.9 0.04 8.7E-07 53.8 5.1 59 280-341 50-109 (241)
54 PF13847 Methyltransf_31: Meth 94.4 0.065 1.4E-06 47.7 5.0 60 279-342 3-67 (152)
55 PRK13168 rumA 23S rRNA m(5)U19 94.2 0.057 1.2E-06 57.1 4.8 56 280-342 298-358 (443)
56 PRK07402 precorrin-6B methylas 93.9 0.085 1.8E-06 49.2 4.9 57 280-341 41-102 (196)
57 PF12847 Methyltransf_18: Meth 93.7 0.11 2.4E-06 43.2 4.8 54 280-338 2-61 (112)
58 PF05175 MTS: Methyltransferas 93.7 0.1 2.2E-06 47.8 4.8 56 279-339 31-91 (170)
59 COG2890 HemK Methylase of poly 93.3 0.094 2E-06 52.3 4.2 43 282-329 113-155 (280)
60 PRK14904 16S rRNA methyltransf 93.2 0.085 1.8E-06 55.9 4.0 76 280-359 251-335 (445)
61 PRK10901 16S rRNA methyltransf 93.2 0.12 2.5E-06 54.6 4.9 74 279-357 244-328 (427)
62 PRK14903 16S rRNA methyltransf 93.1 0.19 4.1E-06 53.2 6.5 74 280-359 238-324 (431)
63 PRK00377 cbiT cobalt-precorrin 92.9 0.18 3.8E-06 47.2 5.3 60 279-342 40-105 (198)
64 PRK14902 16S rRNA methyltransf 92.9 0.11 2.3E-06 55.1 4.2 73 280-358 251-336 (444)
65 PRK14901 16S rRNA methyltransf 92.9 0.15 3.2E-06 53.9 5.3 75 280-358 253-341 (434)
66 PF13649 Methyltransf_25: Meth 92.8 0.21 4.5E-06 41.3 5.0 59 283-343 1-63 (101)
67 KOG1227 Putative methyltransfe 92.7 0.056 1.2E-06 54.3 1.7 43 281-328 196-238 (351)
68 PF02005 TRM: N2,N2-dimethylgu 92.3 0.19 4.1E-06 52.3 5.1 58 279-342 49-115 (377)
69 TIGR01177 conserved hypothetic 92.0 0.21 4.5E-06 50.7 4.9 57 279-342 182-243 (329)
70 KOG2904 Predicted methyltransf 92.0 0.16 3.5E-06 50.6 3.8 44 280-328 149-192 (328)
71 PRK00274 ksgA 16S ribosomal RN 91.7 0.21 4.6E-06 49.3 4.4 55 280-341 43-99 (272)
72 PRK08287 cobalt-precorrin-6Y C 91.3 0.25 5.4E-06 45.7 4.2 55 280-339 32-91 (187)
73 TIGR00755 ksgA dimethyladenosi 91.2 0.27 5.9E-06 47.9 4.6 55 280-341 30-87 (253)
74 PRK00121 trmB tRNA (guanine-N( 91.0 0.4 8.6E-06 45.2 5.3 59 279-342 40-104 (202)
75 PRK14896 ksgA 16S ribosomal RN 91.0 0.3 6.5E-06 47.9 4.6 55 280-341 30-87 (258)
76 PRK11933 yebU rRNA (cytosine-C 90.8 0.49 1.1E-05 50.7 6.4 77 279-359 113-200 (470)
77 PRK14967 putative methyltransf 90.8 0.42 9E-06 45.6 5.3 56 280-341 37-96 (223)
78 PRK06202 hypothetical protein; 90.7 0.44 9.5E-06 45.5 5.4 62 279-341 60-123 (232)
79 TIGR02021 BchM-ChlM magnesium 90.7 0.34 7.4E-06 45.8 4.6 55 279-340 55-115 (219)
80 cd02440 AdoMet_MTases S-adenos 90.5 0.64 1.4E-05 36.2 5.4 55 282-342 1-60 (107)
81 KOG2730 Methylase [General fun 90.3 0.28 6.1E-06 47.5 3.5 57 279-342 94-156 (263)
82 TIGR03587 Pse_Me-ase pseudamin 90.3 0.44 9.5E-06 45.2 4.9 56 280-340 44-99 (204)
83 COG4123 Predicted O-methyltran 90.2 0.41 8.9E-06 47.1 4.7 60 280-345 45-111 (248)
84 TIGR03533 L3_gln_methyl protei 90.1 0.47 1E-05 47.3 5.2 56 280-340 122-183 (284)
85 PRK10258 biotin biosynthesis p 89.7 0.56 1.2E-05 45.2 5.3 55 280-341 43-97 (251)
86 TIGR00537 hemK_rel_arch HemK-r 89.3 0.53 1.1E-05 43.1 4.5 53 281-340 21-77 (179)
87 TIGR00138 gidB 16S rRNA methyl 89.2 0.49 1.1E-05 44.0 4.3 57 280-341 43-104 (181)
88 COG2226 UbiE Methylase involve 89.0 0.57 1.2E-05 45.9 4.7 59 279-342 51-114 (238)
89 TIGR00563 rsmB ribosomal RNA s 89.0 0.45 9.8E-06 50.1 4.3 75 280-359 239-326 (426)
90 PRK01683 trans-aconitate 2-met 89.0 0.91 2E-05 43.9 6.2 58 279-341 31-88 (258)
91 TIGR03840 TMPT_Se_Te thiopurin 88.9 0.64 1.4E-05 44.5 4.9 39 280-325 35-73 (213)
92 PLN02396 hexaprenyldihydroxybe 88.9 0.73 1.6E-05 47.0 5.6 57 279-342 131-193 (322)
93 PLN02585 magnesium protoporphy 88.8 0.65 1.4E-05 47.2 5.1 44 279-329 144-187 (315)
94 PRK11036 putative S-adenosyl-L 88.7 1 2.2E-05 43.8 6.3 57 279-342 44-106 (255)
95 TIGR02469 CbiT precorrin-6Y C5 88.7 1.1 2.5E-05 37.4 5.8 54 281-340 21-80 (124)
96 PRK11207 tellurite resistance 88.0 0.87 1.9E-05 42.7 5.1 55 280-341 31-90 (197)
97 PRK11805 N5-glutamine S-adenos 87.9 0.52 1.1E-05 47.6 3.8 55 281-340 135-195 (307)
98 TIGR00536 hemK_fam HemK family 87.6 0.76 1.7E-05 45.6 4.7 55 281-340 116-176 (284)
99 PRK09328 N5-glutamine S-adenos 87.6 0.68 1.5E-05 45.1 4.3 56 279-339 108-168 (275)
100 PRK04266 fibrillarin; Provisio 87.3 1.1 2.4E-05 43.4 5.5 57 279-340 72-131 (226)
101 TIGR00080 pimt protein-L-isoas 86.9 1.2 2.5E-05 42.3 5.3 59 279-341 77-140 (215)
102 PF10672 Methyltrans_SAM: S-ad 86.6 0.91 2E-05 45.6 4.6 58 281-344 125-189 (286)
103 PRK00517 prmA ribosomal protei 86.6 1 2.2E-05 43.8 4.9 45 279-329 119-163 (250)
104 TIGR00406 prmA ribosomal prote 86.2 1.1 2.3E-05 44.8 4.9 45 279-329 159-203 (288)
105 TIGR02752 MenG_heptapren 2-hep 86.1 1.1 2.4E-05 42.5 4.7 56 280-341 46-108 (231)
106 COG2264 PrmA Ribosomal protein 86.0 1 2.2E-05 45.5 4.6 44 279-328 162-205 (300)
107 KOG2187 tRNA uracil-5-methyltr 85.9 0.76 1.6E-05 49.4 3.8 85 281-378 385-475 (534)
108 PTZ00338 dimethyladenosine tra 85.8 1.3 2.8E-05 44.6 5.2 55 280-341 37-97 (294)
109 PRK13255 thiopurine S-methyltr 85.7 1.1 2.3E-05 43.1 4.4 39 280-325 38-76 (218)
110 PRK11727 23S rRNA mA1618 methy 85.6 1.3 2.9E-05 45.2 5.2 46 278-328 113-158 (321)
111 PF02086 MethyltransfD12: D12 85.6 0.79 1.7E-05 44.1 3.5 40 279-325 20-59 (260)
112 PF06325 PrmA: Ribosomal prote 85.4 1.1 2.3E-05 45.3 4.4 43 280-328 162-204 (295)
113 PRK14968 putative methyltransf 85.0 1.2 2.5E-05 40.4 4.2 42 280-328 24-65 (188)
114 PF01170 UPF0020: Putative RNA 84.4 1.1 2.3E-05 41.7 3.6 62 279-342 28-101 (179)
115 PRK15001 SAM-dependent 23S rib 84.2 1.1 2.3E-05 46.9 3.9 43 281-328 230-272 (378)
116 PRK11188 rrmJ 23S rRNA methylt 84.1 1.2 2.6E-05 42.4 3.9 52 280-341 52-103 (209)
117 PRK04148 hypothetical protein; 84.1 2.5 5.4E-05 37.8 5.7 52 279-339 16-68 (134)
118 COG3963 Phospholipid N-methylt 83.9 2.3 5.1E-05 39.7 5.5 68 279-350 48-115 (194)
119 PLN02244 tocopherol O-methyltr 83.9 1.5 3.3E-05 44.8 4.9 57 279-341 118-180 (340)
120 PLN02781 Probable caffeoyl-CoA 82.9 1.9 4.1E-05 41.8 4.8 61 280-344 69-135 (234)
121 PRK09489 rsmC 16S ribosomal RN 82.7 1.4 3E-05 45.3 4.0 52 282-338 199-254 (342)
122 PLN02233 ubiquinone biosynthes 82.4 1.9 4.1E-05 42.3 4.7 59 280-342 74-140 (261)
123 TIGR01934 MenG_MenH_UbiE ubiqu 82.1 2.3 4.9E-05 39.5 4.9 59 279-341 39-100 (223)
124 KOG2078 tRNA modification enzy 82.1 1 2.2E-05 47.5 2.7 57 279-342 249-312 (495)
125 PRK10742 putative methyltransf 81.8 2.5 5.4E-05 41.7 5.2 58 280-344 89-160 (250)
126 TIGR03534 RF_mod_PrmC protein- 81.6 2 4.3E-05 41.0 4.4 56 280-340 88-148 (251)
127 PRK14966 unknown domain/N5-glu 81.4 2 4.2E-05 45.5 4.6 55 281-340 253-311 (423)
128 PRK01544 bifunctional N5-gluta 81.1 2 4.3E-05 46.5 4.7 55 280-339 139-199 (506)
129 PRK07580 Mg-protoporphyrin IX 80.8 2.1 4.5E-05 40.3 4.2 44 279-329 63-106 (230)
130 PRK15451 tRNA cmo(5)U34 methyl 80.8 2.3 4.9E-05 41.3 4.6 59 280-341 57-121 (247)
131 TIGR02072 BioC biotin biosynth 80.5 2.9 6.4E-05 39.1 5.1 57 280-341 35-92 (240)
132 PF01209 Ubie_methyltran: ubiE 80.4 2.7 5.8E-05 40.8 4.9 60 279-342 47-111 (233)
133 COG2227 UbiG 2-polyprenyl-3-me 80.3 2.6 5.7E-05 41.3 4.7 59 278-343 58-120 (243)
134 TIGR00091 tRNA (guanine-N(7)-) 80.2 3 6.6E-05 38.9 5.1 59 280-343 17-80 (194)
135 PRK00107 gidB 16S rRNA methylt 79.8 3.3 7.1E-05 38.9 5.1 58 280-342 46-108 (187)
136 COG1867 TRM1 N2,N2-dimethylgua 79.5 2.3 5E-05 44.1 4.3 57 280-343 53-116 (380)
137 PRK00050 16S rRNA m(4)C1402 me 79.3 4.3 9.2E-05 41.1 6.1 60 280-345 20-84 (296)
138 PF00398 RrnaAD: Ribosomal RNA 79.1 2.2 4.8E-05 41.8 3.9 57 279-342 30-89 (262)
139 PRK00811 spermidine synthase; 78.8 4 8.6E-05 40.7 5.7 59 280-343 77-145 (283)
140 PRK05134 bifunctional 3-demeth 78.8 4.9 0.00011 38.1 6.1 57 279-342 48-108 (233)
141 PRK13944 protein-L-isoaspartat 78.7 2.9 6.2E-05 39.4 4.4 56 279-340 72-135 (205)
142 TIGR00478 tly hemolysin TlyA f 78.5 3.8 8.3E-05 39.8 5.3 46 279-330 75-120 (228)
143 PF01555 N6_N4_Mtase: DNA meth 77.8 3.4 7.3E-05 38.3 4.6 39 280-325 192-230 (231)
144 PRK12335 tellurite resistance 76.5 3.4 7.4E-05 41.0 4.4 52 282-340 123-178 (287)
145 PRK11088 rrmA 23S rRNA methylt 76.4 4.1 9E-05 40.0 5.0 60 279-341 85-145 (272)
146 COG0144 Sun tRNA and rRNA cyto 76.3 5.8 0.00013 41.0 6.2 81 278-361 155-248 (355)
147 TIGR00438 rrmJ cell division p 75.6 2.3 4.9E-05 39.3 2.7 51 280-340 33-83 (188)
148 COG1092 Predicted SAM-dependen 75.4 3.7 8.1E-05 43.1 4.5 58 281-344 219-283 (393)
149 PF05185 PRMT5: PRMT5 arginine 75.2 3.7 8.1E-05 43.8 4.6 63 279-342 186-254 (448)
150 TIGR02987 met_A_Alw26 type II 75.1 3.5 7.6E-05 44.6 4.4 49 279-328 31-83 (524)
151 PRK13942 protein-L-isoaspartat 74.8 6.1 0.00013 37.5 5.5 58 279-340 76-138 (212)
152 PTZ00098 phosphoethanolamine N 74.6 6 0.00013 38.9 5.5 55 279-339 52-109 (263)
153 PF02384 N6_Mtase: N-6 DNA Met 74.1 3.8 8.3E-05 40.8 4.1 46 279-327 46-96 (311)
154 TIGR02081 metW methionine bios 74.0 6.9 0.00015 36.3 5.5 53 280-340 14-66 (194)
155 PRK00216 ubiE ubiquinone/menaq 73.9 5.1 0.00011 37.6 4.7 57 279-341 51-115 (239)
156 PRK06922 hypothetical protein; 73.8 6.2 0.00014 44.1 5.9 58 280-342 419-480 (677)
157 PRK08317 hypothetical protein; 73.7 5.3 0.00012 37.2 4.8 56 279-340 19-80 (241)
158 PF08241 Methyltransf_11: Meth 73.3 7.4 0.00016 30.4 4.9 51 284-341 1-54 (95)
159 PF01189 Nol1_Nop2_Fmu: NOL1/N 72.8 8.5 0.00018 38.4 6.2 79 279-361 85-175 (283)
160 PRK03612 spermidine synthase; 72.0 8.9 0.00019 41.7 6.6 59 280-343 298-368 (521)
161 TIGR01983 UbiG ubiquinone bios 71.5 7.1 0.00015 36.6 5.1 57 279-342 45-106 (224)
162 PTZ00146 fibrillarin; Provisio 70.8 7.3 0.00016 39.4 5.2 58 279-340 132-192 (293)
163 PRK14103 trans-aconitate 2-met 70.6 8.7 0.00019 37.2 5.6 56 279-341 29-84 (255)
164 PF13489 Methyltransf_23: Meth 70.3 7.6 0.00017 33.8 4.7 39 278-323 21-59 (161)
165 TIGR00477 tehB tellurite resis 69.9 7.4 0.00016 36.3 4.8 41 280-327 31-71 (195)
166 cd05834 HDGF_related The PWWP 68.3 7.9 0.00017 31.6 4.0 42 134-176 2-43 (83)
167 PF03848 TehB: Tellurite resis 68.3 7.7 0.00017 36.8 4.5 56 279-341 30-89 (192)
168 PRK15068 tRNA mo(5)U34 methylt 67.9 7.3 0.00016 39.6 4.6 57 280-342 123-185 (322)
169 COG2230 Cfa Cyclopropane fatty 67.9 11 0.00023 38.0 5.7 60 278-343 71-136 (283)
170 PRK00312 pcm protein-L-isoaspa 67.5 7.1 0.00015 36.7 4.1 53 279-338 78-135 (212)
171 PRK04457 spermidine synthase; 67.2 14 0.0003 36.5 6.2 58 281-343 68-131 (262)
172 PLN02336 phosphoethanolamine N 66.8 7.4 0.00016 41.3 4.6 54 280-340 38-94 (475)
173 COG2242 CobL Precorrin-6B meth 65.8 12 0.00026 35.4 5.2 60 279-343 34-98 (187)
174 TIGR00417 speE spermidine synt 64.7 17 0.00038 35.7 6.4 56 282-342 75-139 (270)
175 PLN02672 methionine S-methyltr 64.6 7.2 0.00016 46.0 4.2 43 281-328 120-162 (1082)
176 PRK11873 arsM arsenite S-adeno 64.6 11 0.00025 36.6 5.1 59 279-341 77-140 (272)
177 PF11302 DUF3104: Protein of u 63.6 16 0.00035 29.5 4.7 28 135-162 6-39 (75)
178 COG0030 KsgA Dimethyladenosine 63.5 12 0.00026 37.2 4.9 56 280-342 31-89 (259)
179 PRK05785 hypothetical protein; 63.3 11 0.00024 36.1 4.7 52 280-341 52-104 (226)
180 TIGR03438 probable methyltrans 63.3 11 0.00024 37.7 4.9 61 280-344 64-130 (301)
181 TIGR00740 methyltransferase, p 63.3 17 0.00036 34.8 5.9 61 279-342 53-119 (239)
182 PRK13943 protein-L-isoaspartat 62.5 16 0.00035 37.3 5.9 58 279-340 80-142 (322)
183 PF09926 DUF2158: Uncharacteri 62.4 12 0.00026 28.1 3.7 38 135-175 1-38 (53)
184 cd05835 Dnmt3b_related The PWW 61.8 9.3 0.0002 31.4 3.3 40 135-175 1-43 (87)
185 KOG2133 Transcriptional corepr 61.7 5 0.00011 46.1 2.1 122 129-250 140-282 (1229)
186 PLN02490 MPBQ/MSBQ methyltrans 61.2 19 0.00042 37.1 6.2 58 279-341 113-172 (340)
187 COG1041 Predicted DNA modifica 60.2 7.4 0.00016 40.2 2.9 56 280-342 198-259 (347)
188 TIGR00452 methyltransferase, p 60.2 14 0.0003 37.7 4.9 57 280-342 122-184 (314)
189 PRK11705 cyclopropane fatty ac 60.1 18 0.00039 37.7 5.8 56 279-340 167-224 (383)
190 PRK13699 putative methylase; P 60.0 12 0.00025 36.2 4.2 41 281-328 165-205 (227)
191 PF11599 AviRa: RRNA methyltra 59.9 13 0.00028 36.2 4.3 49 276-329 48-98 (246)
192 PF01728 FtsJ: FtsJ-like methy 59.5 8.7 0.00019 35.0 3.1 50 279-339 23-73 (181)
193 TIGR01444 fkbM_fam methyltrans 59.1 13 0.00028 32.1 4.0 53 282-339 1-58 (143)
194 PF08940 DUF1918: Domain of un 58.4 14 0.00031 28.3 3.5 38 136-174 4-42 (58)
195 cd06080 MUM1_like Mutated mela 57.4 16 0.00035 29.8 3.9 39 135-177 1-39 (80)
196 COG3897 Predicted methyltransf 56.9 4.6 9.9E-05 38.7 0.7 45 279-329 79-123 (218)
197 PLN02336 phosphoethanolamine N 56.8 17 0.00038 38.5 5.2 56 279-340 266-325 (475)
198 PRK10708 hypothetical protein; 56.4 30 0.00064 26.5 4.8 44 136-180 2-52 (62)
199 PF07021 MetW: Methionine bios 56.3 41 0.00088 32.0 6.9 57 279-343 13-69 (193)
200 PRK14121 tRNA (guanine-N(7)-)- 54.8 30 0.00065 36.4 6.4 62 279-345 122-188 (390)
201 COG5076 Transcription factor i 54.6 1.8 4E-05 44.8 -2.6 93 126-219 268-361 (371)
202 PRK11524 putative methyltransf 54.4 16 0.00034 36.3 4.2 42 281-329 210-251 (284)
203 PRK09496 trkA potassium transp 53.2 22 0.00048 37.1 5.2 54 286-342 235-288 (453)
204 PF02254 TrkA_N: TrkA-N domain 52.8 30 0.00065 28.8 5.0 53 286-343 2-54 (116)
205 PLN02476 O-methyltransferase 52.2 21 0.00046 35.8 4.6 61 280-344 119-185 (278)
206 PF03291 Pox_MCEL: mRNA cappin 51.9 15 0.00032 37.7 3.5 42 279-326 62-103 (331)
207 cd00024 CHROMO Chromatin organ 51.8 10 0.00022 27.5 1.7 20 413-432 18-39 (55)
208 cd05162 PWWP The PWWP domain, 50.3 22 0.00047 28.8 3.6 40 135-175 1-46 (87)
209 KOG1270 Methyltransferases [Co 49.0 17 0.00036 36.4 3.2 40 281-327 91-130 (282)
210 smart00828 PKS_MT Methyltransf 47.2 28 0.00061 32.6 4.5 51 282-338 2-59 (224)
211 PTZ00112 origin recognition co 46.4 34 0.00074 40.0 5.5 59 122-180 440-522 (1164)
212 PF10383 Clr2: Transcription-s 44.4 97 0.0021 27.7 7.2 52 123-174 1-70 (139)
213 PF02390 Methyltransf_4: Putat 44.2 51 0.0011 31.0 5.7 61 281-346 19-84 (195)
214 PF00855 PWWP: PWWP domain; I 43.7 28 0.00061 27.6 3.3 40 135-175 1-43 (86)
215 smart00293 PWWP domain with co 43.6 27 0.00059 26.6 3.1 40 135-175 1-47 (63)
216 KOG3191 Predicted N6-DNA-methy 43.3 52 0.0011 31.4 5.4 59 279-341 43-105 (209)
217 PF10781 DSRB: Dextransucrase 43.2 70 0.0015 24.5 5.0 44 136-180 2-52 (62)
218 PLN02366 spermidine synthase 41.9 55 0.0012 33.2 5.8 59 280-343 92-159 (308)
219 COG2813 RsmC 16S RNA G1207 met 41.0 34 0.00075 34.7 4.1 52 281-338 160-217 (300)
220 cd05840 SPBC215_ISWI_like The 39.8 28 0.00062 29.0 2.8 40 135-175 1-49 (93)
221 PF00467 KOW: KOW motif; Inte 37.1 54 0.0012 21.6 3.3 26 137-163 1-26 (32)
222 COG4076 Predicted RNA methylas 36.8 42 0.0009 32.2 3.7 53 282-341 35-92 (252)
223 PRK01581 speE spermidine synth 36.7 81 0.0018 33.1 6.1 60 280-344 151-222 (374)
224 smart00298 CHROMO Chromatin or 34.4 23 0.0005 25.4 1.3 21 412-432 15-37 (55)
225 PRK13256 thiopurine S-methyltr 32.9 74 0.0016 30.9 4.9 40 280-326 44-83 (226)
226 PF13679 Methyltransf_32: Meth 32.8 89 0.0019 27.4 5.1 47 278-327 24-72 (141)
227 PLN03075 nicotianamine synthas 32.7 89 0.0019 31.7 5.6 59 279-341 123-189 (296)
228 COG4106 Tam Trans-aconitate me 32.5 84 0.0018 30.9 5.1 58 279-341 30-87 (257)
229 PF10294 Methyltransf_16: Puta 31.9 68 0.0015 29.3 4.3 43 279-327 45-87 (173)
230 PF02353 CMAS: Mycolic acid cy 31.5 54 0.0012 32.6 3.8 58 279-342 62-125 (273)
231 COG0569 TrkA K+ transport syst 31.3 65 0.0014 31.0 4.2 53 287-342 5-57 (225)
232 TIGR00006 S-adenosyl-methyltra 30.9 89 0.0019 31.8 5.3 60 281-345 22-85 (305)
233 PF05401 NodS: Nodulation prot 30.0 70 0.0015 30.7 4.1 54 281-341 45-101 (201)
234 KOG1122 tRNA and rRNA cytosine 29.7 50 0.0011 35.2 3.2 78 278-359 240-329 (460)
235 PF00385 Chromo: Chromo (CHRro 29.0 21 0.00045 26.1 0.3 19 414-432 18-38 (55)
236 COG4741 Predicted secreted end 28.5 81 0.0018 29.0 4.0 14 66-79 105-118 (175)
237 PRK11783 rlmL 23S rRNA m(2)G24 27.5 62 0.0013 36.6 3.8 32 311-342 259-296 (702)
238 PF10107 Endonuc_Holl: Endonuc 27.4 60 0.0013 29.8 3.0 14 65-78 91-104 (156)
239 smart00739 KOW KOW (Kyprides, 27.2 1.1E+02 0.0023 18.8 3.4 25 135-160 2-26 (28)
240 cd05836 N_Pac_NP60 The PWWP do 26.5 76 0.0016 26.0 3.2 40 135-175 1-44 (86)
241 cd05837 MSH6_like The PWWP dom 26.4 68 0.0015 27.4 3.1 43 134-177 2-53 (110)
242 PF03807 F420_oxidored: NADP o 26.1 1.1E+02 0.0024 24.4 4.2 41 287-329 4-47 (96)
243 PF11717 Tudor-knot: RNA bindi 26.0 2.2E+02 0.0047 21.1 5.4 28 135-163 1-28 (55)
244 PRK11760 putative 23S rRNA C24 25.7 1E+02 0.0022 32.2 4.6 51 279-338 211-261 (357)
245 KOG2361 Predicted methyltransf 25.1 57 0.0012 32.3 2.6 46 280-328 72-117 (264)
246 TIGR00571 dam DNA adenine meth 24.7 61 0.0013 31.9 2.8 37 282-327 28-64 (266)
247 KOG1540 Ubiquinone biosynthesi 23.6 1.2E+02 0.0026 30.5 4.4 64 279-342 100-172 (296)
248 PF01488 Shikimate_DH: Shikima 22.9 1.2E+02 0.0026 26.5 4.1 54 287-342 17-70 (135)
249 COG5475 Uncharacterized small 22.9 2.1E+02 0.0046 21.9 4.7 38 133-178 3-40 (60)
250 PF15057 DUF4537: Domain of un 22.8 1.7E+02 0.0037 25.6 4.9 42 133-174 54-97 (124)
251 PLN02823 spermine synthase 22.7 1.9E+02 0.0041 29.7 6.0 57 282-343 106-171 (336)
252 KOG1499 Protein arginine N-met 22.5 99 0.0021 32.1 3.8 55 281-341 62-121 (346)
253 cd04466 S1_YloQ_GTPase S1_YloQ 20.4 1.2E+02 0.0027 22.7 3.2 25 134-161 37-61 (68)
254 PRK06130 3-hydroxybutyryl-CoA 20.3 1.7E+02 0.0036 29.1 4.9 37 287-326 9-45 (311)
No 1
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=4.6e-33 Score=242.92 Aligned_cols=122 Identities=52% Similarity=0.947 Sum_probs=115.1
Q ss_pred CEEEeeCCEEEEEeCCCCccEEEEEEEEeecCCCceEEEEEEeeeccccccccccCCCCCceeEeeCCcccccccceeee
Q 013949 132 GCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSK 211 (433)
Q Consensus 132 G~~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~~d~~pl~~I~gK 211 (433)
|++|++||+|||.+++++|+|||||++||++.+|..+|+|+|||||+||++++....++++|||+|+++|+||++||.||
T Consensus 1 g~~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I~~K 80 (122)
T cd04716 1 GITYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKTYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLISK 80 (122)
T ss_pred CcEEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCceEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhheeee
Confidence 78999999999999988999999999999999999999999999999998887677899999999999999999999999
Q ss_pred eEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcCCC
Q 013949 212 AKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNINN 253 (433)
Q Consensus 212 C~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~lp~ 253 (433)
|+|+++++...++.+...+.+|+|||+|.|++.+++|.+||+
T Consensus 81 c~V~~~~~~~~~~~~~~~~~~~df~c~~~Y~~~~~tF~~~~~ 122 (122)
T cd04716 81 VKILQVPPNVGTKRKKPNSEKCDYYYDMEYCVPYSTFQTLRN 122 (122)
T ss_pred eEEEEeCCCCCcccccccCCCceEEEeeEeccchhheEeCCC
Confidence 999999998888767777889999999999999999999974
No 2
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=9.6e-33 Score=258.02 Aligned_cols=163 Identities=21% Similarity=0.347 Sum_probs=129.9
Q ss_pred EEECCEEEeeCCEEEEEeC------------------CCCccEEEEEEEEeecCCC------ceEEEEEEeeeccccccc
Q 013949 128 ASVDGCLYNLGDDAYVKAE------------------EGAVDYIARIVELFESVDG------EPYFKARWFYRAEDTVIK 183 (433)
Q Consensus 128 ~~vdG~~Y~vGD~VyV~~~------------------~~~p~yIgrI~ei~e~~dg------~~~v~VrWFyRpeDtv~~ 183 (433)
|+++|++|++||+|||.|+ +..|++||||.+|++.+++ ..+|+|||||||+||..
T Consensus 1 f~~~Gv~Y~vgD~VYv~p~~f~~~~~~~~~~~~G~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwFYRPEdt~~- 79 (202)
T cd04708 1 FVYDGVTYSVGDFLYVSPDAFAEEERERATFKAGRNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRFYRPEDVSP- 79 (202)
T ss_pred CcCCCEEEecCCeEEECcccccccccccccccccccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEEechhhcCc-
Confidence 4689999999999999998 4569999999999987655 68999999999999954
Q ss_pred cccCCCCCceeEeeCCcccccccceeeeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcCCCCCC-cCCCC-
Q 013949 184 DLAYLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNINNESN-RRDSD- 261 (433)
Q Consensus 184 ~~~~~~d~rELF~S~~~d~~pl~~I~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~lp~e~~-~~~s~- 261 (433)
..++.+|.+|||+|++.+++|+++|.|||+|++..+...+.+ ....++.|||...||+.++.|+.||++.+ ...+.
T Consensus 80 ~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~--~~~~~~~Ffc~~~Yd~~tg~f~~lP~~~~~~~~~~~ 157 (202)
T cd04708 80 EKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDA--PVIFEHVFFCELLYDPAKGSLKQLPPNIKEEAYSTG 157 (202)
T ss_pred ccceecCceeEEEeccceeechhHcceEEEEEecCcchhhhc--cccCCCceEEEEEEcCCCCccCCCCchhcccccccc
Confidence 557788999999999999999999999999999997554422 23457999999999999999999999988 22221
Q ss_pred --------CCCccccCC--CC---CCCCCCCCCcEEecccchhHH
Q 013949 262 --------ASSTISSET--GS---NSPIGEPEMSLLDLYSGCGAM 293 (433)
Q Consensus 262 --------~~~~i~~~~--~~---~~~~~~~~l~~lDLFsG~GG~ 293 (433)
.++.--+++ +. ...++.++|.+||+|||||||
T Consensus 158 ~~~~~~~k~kgkgk~~~~~~~~~~~~~~~~~~LaTLDIFAGCGGL 202 (202)
T cd04708 158 ASDSALRKRKGKGKGDSESDSEAPVKAPKENRLATLDIFAGCGGL 202 (202)
T ss_pred ccccccccCCCCCcCccccccccccccccccccceeeeecccCCC
Confidence 011100111 11 112566899999999999996
No 3
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.9e-29 Score=253.34 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=120.5
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHHHh--------cCcCCC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSL--------LKEWAK 350 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~~l--------l~~~~~ 350 (433)
.+++++||||||||+++|| +.+||++ +||+|||++|++||++|||...+...||..+... +-..++
T Consensus 2 ~~~~~idLFsG~GG~~lGf----~~agf~~--~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGF----EEAGFEI--VFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CCceEEeeccCCchHHHHH----HhcCCeE--EEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCC
Confidence 5789999999999999999 8899997 7999999999999999999877888999855431 112467
Q ss_pred CCchhhcccCCCCCCcccCchHHHHHhcccccCCCCCCCCCcEEEEeccccccccCCCC------CCCCCceEEEEEEEe
Q 013949 351 LCQYFSIYDTDKVPEQSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVCYGDPNK------TKKPGVYFKECCLII 424 (433)
Q Consensus 351 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~~~~~~~~i~~~~P~~fvvENV~gi~~~~p~~------~~~~gl~~~v~w~~~ 424 (433)
|||+||.||++++..|+|++|+.+++++ |...+|++|++|||+||++. .+. .....+||.+.|..+
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~-------I~~~~P~~fv~ENV~gl~~~-~~~~~~~i~~~L~~~GY~~~~~il 147 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFIRL-------IEQLRPKFFVLENVKGLLSS-KGQTFDEIKKELEELGYGVEFNIL 147 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHHHH-------HHhhCCCEEEEecCchHHhc-CchHHHHHHHHHHHcCCcchHhee
Confidence 9999999999989999999999999999 89999999999999999987 222 133788999999999
Q ss_pred -eeeecee
Q 013949 425 -CYLTFVP 431 (433)
Q Consensus 425 -~~~~~~p 431 (433)
+.+++||
T Consensus 148 na~dyGvP 155 (328)
T COG0270 148 NAADYGVP 155 (328)
T ss_pred eHHhcCCC
Confidence 5577788
No 4
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=99.95 E-value=2.2e-29 Score=249.47 Aligned_cols=136 Identities=24% Similarity=0.319 Sum_probs=111.3
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHHHh-cC------cCCCCCc
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSL-LK------EWAKLCQ 353 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~~l-l~------~~~~PCQ 353 (433)
|+++|||||||||++|| +++|+++ +||+|+|+.|++||++||| .+.+.||.++... +. ..++|||
T Consensus 1 ~~~~dlFsG~Gg~~~g~----~~ag~~~--~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGL----EQAGFEV--VWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEEET-TTTHHHHHH----HHTTEEE--EEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHHT-SEEEEE---T
T ss_pred CcEEEEccCccHHHHHH----HhcCcEE--EEEeecCHHHHHhhhhccc--ccccccccccccccccccceEEEeccCCc
Confidence 58999999999999999 8899987 7999999999999999999 7889999876521 11 2357999
Q ss_pred hhhcccCCCCCCcccCchHHHHHhcccccCCCCCCCCCcEEEEeccccccccCCCC------CCCCCceEEEEEEEeee-
Q 013949 354 YFSIYDTDKVPEQSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVCYGDPNK------TKKPGVYFKECCLIICY- 426 (433)
Q Consensus 354 ~fS~ag~~~~~~d~r~~L~~~~~~~~~~~~~~i~~~~P~~fvvENV~gi~~~~p~~------~~~~gl~~~v~w~~~~~- 426 (433)
+||.+|++++.+|+|+.|+.+++++ ++.++|++|++|||+||+..+... .....|||.|.|+.|+.
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~~~~-------v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~ 145 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEFLRI-------VKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAA 145 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHHHHH-------HHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGG
T ss_pred eEeccccccccccccchhhHHHHHH-------HhhccceEEEecccceeeccccccccccccccccccceeehhccccHh
Confidence 9999999889999999999999999 889999999999999999654332 12256899999999965
Q ss_pred eecee
Q 013949 427 LTFVP 431 (433)
Q Consensus 427 ~~~~p 431 (433)
++++|
T Consensus 146 ~yGvP 150 (335)
T PF00145_consen 146 DYGVP 150 (335)
T ss_dssp GGTSS
T ss_pred hCCCC
Confidence 45588
No 5
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.95 E-value=3.8e-27 Score=212.15 Aligned_cols=131 Identities=22% Similarity=0.377 Sum_probs=113.3
Q ss_pred ccccceeEEEECCEEEeeCCEEEEEeCCCCccEEEEEEEEeecCCCceEEEEEEeeeccccccccc--cCCCCCceeEee
Q 013949 120 QARCHYTQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDL--AYLVDRKRVFLS 197 (433)
Q Consensus 120 ~~r~~Y~~~~vdG~~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~--~~~~d~rELF~S 197 (433)
.+|+||+++.+||++|+|||+|||.++++.++|||+|++||++.+|.++++|+|||||+||..... ...++++|||+|
T Consensus 6 ~~~~~y~s~~~dg~~y~vgD~Vlv~~~~~~~pyI~~I~~i~~~~~~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~S 85 (146)
T cd04713 6 KKKCHYTSFEKDGNKYRLEDCVLLVPEDDQKPYIAIIKDIYKQEEGSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFYS 85 (146)
T ss_pred cceeeeeeEEECCEEEECCCEEEEeCCCCCCCEEEEEEEEEEcCCCCEEEEEEeeECHHHhccccccccccCCCCeEEEe
Confidence 578999999999999999999999998778889999999999988999999999999999964322 234578999999
Q ss_pred CCcccccccceeeeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcCCC
Q 013949 198 DVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNINN 253 (433)
Q Consensus 198 ~~~d~~pl~~I~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~lp~ 253 (433)
++.|+||++||.|||+|+++++...++.. .....|||+..||+..++|..|-.
T Consensus 86 ~~~d~~~~~~I~gkc~V~~~~~~~~~~~~---~~~~~F~cr~~yD~~~~~~~~~~~ 138 (146)
T cd04713 86 FHRDEVPAESVLHPCKVAFVPKGKQIPLR---KGHSGFIVRRVYDNVNKKLWKLTD 138 (146)
T ss_pred CCCCcCCHHHCcceeEEEECCccccCCcc---CCCCeEEEEEEEcCCCCcEeeccc
Confidence 99999999999999999999876655321 235789999999999999888743
No 6
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.94 E-value=7.8e-27 Score=203.25 Aligned_cols=115 Identities=29% Similarity=0.395 Sum_probs=102.8
Q ss_pred CEEEeeCCEEEEEeC-CCCccEEEEEEEEeecCCCceEEEEEEeeeccccccccccCCCCCceeEeeCCcccccccceee
Q 013949 132 GCLYNLGDDAYVKAE-EGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVS 210 (433)
Q Consensus 132 G~~Y~vGD~VyV~~~-~~~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~~d~~pl~~I~g 210 (433)
|.+|++||||+|+++ +++|+|||+|++||++.+|.+||+++||||++||++++ .++++|||+|++|+++++++|.+
T Consensus 1 g~~i~vGD~V~v~~~~~~~p~~I~rV~~mfe~~~g~k~~h~rWf~Rg~dTVlG~---~~~~kEvFlsd~c~d~~l~~I~~ 77 (124)
T cd04760 1 GEELEAGDCVSVKPDDPTKPLYIARVTYMWKDSIGGKMFHAHWFCRGSDTVLGE---TSDPLELFLVDECEDMALSSIHG 77 (124)
T ss_pred CCEEecCCEEEEecCCCCCCcEEEEEhhheecCCCCcEEEEEEEEECCcccccc---cCCCcEEEeecccCCcchHHhee
Confidence 678999999999987 88999999999999999999999999999999999987 69999999999999999999999
Q ss_pred eeEEEeeCcc--------cchhhhccCCCCceEEEeeeccCCCceeE
Q 013949 211 KAKIAEVAAN--------MDLEAKQKNIPPCDLYYDMKYTLPHLTFS 249 (433)
Q Consensus 211 KC~V~~~~~~--------~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~ 249 (433)
||+|.+.+|. .+.+.........+|||++.|++...+|+
T Consensus 78 Kv~V~~~~p~~~w~~~~g~~~~~~~~~ddg~tffyq~~yd~~~arf~ 124 (124)
T cd04760 78 KVNVIYKAPSENWSMEGGMDEEDEIFEDDGKTFFYQKWYDPECARFE 124 (124)
T ss_pred eeEEEEeCCCcchhhhcCCCCccccccCCCCeEEEEEeeChhhhccC
Confidence 9999999986 33333334445689999999999888874
No 7
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=3.2e-27 Score=237.29 Aligned_cols=136 Identities=21% Similarity=0.184 Sum_probs=115.9
Q ss_pred EEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHHHh-cC-----cCCCCCchhh
Q 013949 283 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSL-LK-----EWAKLCQYFS 356 (433)
Q Consensus 283 ~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~~l-l~-----~~~~PCQ~fS 356 (433)
++|||||||||++|| +.+|+++ +||+|+|+.|++||++|||+ .++++||.++... +. ..++|||+||
T Consensus 1 vidLF~G~GG~~~Gl----~~aG~~~--~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGF----EQAGFKC--VFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHH----HHcCCeE--EEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 589999999999999 8899997 79999999999999999998 6788999988631 22 2457999999
Q ss_pred cccCCCCCCcccCchHHHHHhcccccCCCCCCCCCcEEEEeccccccccCCCCC------CCCCceEEEEEEEeee-eec
Q 013949 357 IYDTDKVPEQSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVCYGDPNKT------KKPGVYFKECCLIICY-LTF 429 (433)
Q Consensus 357 ~ag~~~~~~d~r~~L~~~~~~~~~~~~~~i~~~~P~~fvvENV~gi~~~~p~~~------~~~gl~~~v~w~~~~~-~~~ 429 (433)
.+|++++.+|+|+.|+.+++++ ++..+|++|++|||+||+..+.+.. ....+||.|.|+.++. +++
T Consensus 74 ~ag~~~~~~d~r~~L~~~~~r~-------i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyG 146 (315)
T TIGR00675 74 IAGKRKGFEDTRGTLFFEIVRI-------LKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFG 146 (315)
T ss_pred hhcccCCCCCchhhHHHHHHHH-------HhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCC
Confidence 9999888889999999999999 8999999999999999996554331 2367899999999944 666
Q ss_pred eec
Q 013949 430 VPF 432 (433)
Q Consensus 430 ~p~ 432 (433)
+|-
T Consensus 147 vPQ 149 (315)
T TIGR00675 147 VPQ 149 (315)
T ss_pred CCC
Confidence 883
No 8
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.93 E-value=1.3e-26 Score=228.81 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=115.9
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHHHh--cC-----cCCCCCc
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSL--LK-----EWAKLCQ 353 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~~l--l~-----~~~~PCQ 353 (433)
|+++|||||||||++|| +.+|+++ ++|+|+|+.|++||++|||++ +++.||.++... .. ..++|||
T Consensus 1 ~~v~dLFsG~Gg~~~gl----~~~G~~~--v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 1 LRVIDLFAGIGGFRLGL----EKAGFEI--VAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred CcEEEEccCcchHHHHH----HHcCCEE--EEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCCh
Confidence 58999999999999999 7899996 799999999999999999986 788999887632 11 1356999
Q ss_pred hhhcccCCCCCCcccCchHHHHHhcccccCCCCCCCCCcEEEEeccccccccCCCC------CCCCCceEEEEEEEeee-
Q 013949 354 YFSIYDTDKVPEQSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVCYGDPNK------TKKPGVYFKECCLIICY- 426 (433)
Q Consensus 354 ~fS~ag~~~~~~d~r~~L~~~~~~~~~~~~~~i~~~~P~~fvvENV~gi~~~~p~~------~~~~gl~~~v~w~~~~~- 426 (433)
+||.+|++++.+|+|+.|+.+++++ ++..+|++|++|||+||+..+... .....+||.+.|..++-
T Consensus 74 ~fS~ag~~~~~~d~r~~L~~~~~~~-------i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~ 146 (275)
T cd00315 74 PFSIAGKRKGFEDTRGTLFFEIIRI-------LKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNAS 146 (275)
T ss_pred hhhHHhhcCCCCCchHHHHHHHHHH-------HHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHH
Confidence 9999999888899999999999999 889999999999999998644322 12257899999999954
Q ss_pred eecee
Q 013949 427 LTFVP 431 (433)
Q Consensus 427 ~~~~p 431 (433)
++++|
T Consensus 147 ~~GvP 151 (275)
T cd00315 147 DYGVP 151 (275)
T ss_pred HcCCC
Confidence 56687
No 9
>PRK10458 DNA cytosine methylase; Provisional
Probab=99.93 E-value=1.4e-26 Score=242.69 Aligned_cols=140 Identities=22% Similarity=0.228 Sum_probs=115.1
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC---CCCceeecChhhHHHh-----------
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADDFLSL----------- 344 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~---p~~~v~~~di~d~~~l----------- 344 (433)
.+++++|||||||||++|| +.+|+++ ++++|||+.|++||++|| |++.++++||.++...
T Consensus 87 ~~~~~iDLFsGiGGl~lGf----e~aG~~~--v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGF----EAIGGQC--VFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CCceEEEeCcCccHHHHHH----HHcCCEE--EEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhh
Confidence 5789999999999999999 8899986 799999999999999998 5667888999877410
Q ss_pred ------cC-----cCCCCCchhhcccCCCC--------C-CcccCchHHHHHhcccccCCCCCCCCCcEEEEeccccccc
Q 013949 345 ------LK-----EWAKLCQYFSIYDTDKV--------P-EQSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVCY 404 (433)
Q Consensus 345 ------l~-----~~~~PCQ~fS~ag~~~~--------~-~d~r~~L~~~~~~~~~~~~~~i~~~~P~~fvvENV~gi~~ 404 (433)
+. ..++|||+||.||+++. . .|+|+.|+.+++++ ++..+|++|+||||+||+.
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~ri-------i~~~kPk~fvlENV~gl~s 233 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARI-------IDAKRPAIFVLENVKNLKS 233 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHH-------HHHhCCCEEEEeCcHhhhc
Confidence 11 13579999999996542 2 36899999999999 8899999999999999997
Q ss_pred cCCCCC------CCCCceEEEE---------EEEeeeeecee
Q 013949 405 GDPNKT------KKPGVYFKEC---------CLIICYLTFVP 431 (433)
Q Consensus 405 ~~p~~~------~~~gl~~~v~---------w~~~~~~~~~p 431 (433)
.+.+.+ ....+||.|. |+.|+-.+|||
T Consensus 234 ~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~fVP 275 (467)
T PRK10458 234 HDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLP 275 (467)
T ss_pred ccccHHHHHHHHHHHHcCCeEEeccccCcccceEeehhhCCC
Confidence 655432 2257899995 68887777787
No 10
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=1.7e-25 Score=198.61 Aligned_cols=117 Identities=24% Similarity=0.410 Sum_probs=99.6
Q ss_pred EEECCEEEeeCCEEEEEeC-CCCccEEEEEEEEeecCC------------CceEEEEEEeeeccccccccccCCCCCcee
Q 013949 128 ASVDGCLYNLGDDAYVKAE-EGAVDYIARIVELFESVD------------GEPYFKARWFYRAEDTVIKDLAYLVDRKRV 194 (433)
Q Consensus 128 ~~vdG~~Y~vGD~VyV~~~-~~~p~yIgrI~ei~e~~d------------g~~~v~VrWFyRpeDtv~~~~~~~~d~rEL 194 (433)
+..+|++|++||+|||.++ +++|+|||||++|+..++ +..+|+|+|||||+|+.... .+|+|||
T Consensus 5 ~~~~g~~~~vgD~Vyv~~~~~~ePyyIgrI~e~~~~~~~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~---~~d~rel 81 (135)
T cd04710 5 VLKNGELLKVNDHIYMSSEPPGEPYYIGRIMEFVPKHEFPSGIHARVFPASYFQVRLNWYYRPRDISRRV---VADSRLL 81 (135)
T ss_pred EccCCeEEeCCCEEEEecCCCCCCCEEEEEEEEEecCCCCccccccccCCCcEEEEEEEEeCHHHcCCcc---cCCceEE
Confidence 3468999999999999998 789999999999998643 23689999999999983322 6899999
Q ss_pred EeeCCcccccccceeeeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeE
Q 013949 195 FLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFS 249 (433)
Q Consensus 195 F~S~~~d~~pl~~I~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~ 249 (433)
|+|+|.|++|+++|+|||+|.+.++..++.+ +. ..++.|||...||+.+++|.
T Consensus 82 f~S~h~d~~p~~si~gKC~V~~~~di~~l~~-~~-~~~~~Fyf~~lyD~~~~r~~ 134 (135)
T cd04710 82 YASMHSDICPIGSVRGKCTVRHRDQIPDLEE-YK-KRPNHFYFDQLFDRYILRYY 134 (135)
T ss_pred EEEeeEeeechHHEEeEEEEEEecccchhhh-hc-cCCCEEEEEeeeCcchhhcc
Confidence 9999999999999999999999997655532 22 34799999999999998875
No 11
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.92 E-value=7.8e-25 Score=200.05 Aligned_cols=123 Identities=20% Similarity=0.244 Sum_probs=106.1
Q ss_pred CEEEeeCCEEEEEeCCCCccEEEEEEEEeecCCCceEEEEEEeeecccccccc---------------------ccCCCC
Q 013949 132 GCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKD---------------------LAYLVD 190 (433)
Q Consensus 132 G~~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~---------------------~~~~~d 190 (433)
+.+|++||+|||.++++.|++||||++||++++|..+++|+|||||+|+.... ..+..+
T Consensus 1 ~~~yrvGD~Vy~~~~~~~Py~I~rI~e~~~~~~~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd04709 1 ANMYRVGDYVYFESSPNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLR 80 (164)
T ss_pred CcEEecCCEEEEECCCCCCCEEEEEEEEEeCCCCCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccC
Confidence 36899999999999988899999999999999999999999999999984321 123468
Q ss_pred CceeEeeCCcccccccceeeeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcCCCCCC
Q 013949 191 RKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNINNESN 256 (433)
Q Consensus 191 ~rELF~S~~~d~~pl~~I~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~lp~e~~ 256 (433)
.||||+|++.+.+|+++|+|||.|+++++...+. .+ ....+.|||...||+.+++|..-.-+++
T Consensus 81 ~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~-~~-~~~~d~Ff~~~~YDP~~k~l~~~~geir 144 (164)
T cd04709 81 HRELFLSRQVETLPATHIRGKCSVTLLNDTESAR-SY-LAREDTFFYSLVYDPEQKTLLADQGEIR 144 (164)
T ss_pred cceeEEecccccccHHHeeeeEEEEEehhhhhhh-hc-cCCCCEEEEEEEECCCCCeecccceeEE
Confidence 9999999999999999999999999999866653 22 2357899999999999999998877776
No 12
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.92 E-value=1.2e-24 Score=187.17 Aligned_cols=116 Identities=31% Similarity=0.553 Sum_probs=99.3
Q ss_pred EEEeeCCEEEEEeCC-CCccEEEEEEEEeecCCCc--eEEEEEEeeeccccccccccCCCCCceeEeeCCccccccccee
Q 013949 133 CLYNLGDDAYVKAEE-GAVDYIARIVELFESVDGE--PYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIV 209 (433)
Q Consensus 133 ~~Y~vGD~VyV~~~~-~~p~yIgrI~ei~e~~dg~--~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~~d~~pl~~I~ 209 (433)
++|++||||||.+++ ..|+|||+|++||++.++. .+++|+|||||+||..+ ....++|||+|++++++|+++|.
T Consensus 1 ~~~~vGD~V~v~~~~~~~~~~v~~I~~i~~~~~~~~~~~~~v~Wf~rp~d~~~~---~~~~~~Elf~s~~~~~~~~~~I~ 77 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDDPPEPPYVARIEEIWEDKDGNKEKMVKVRWFYRPEDTSLG---KTFSPRELFLSDHCDDIPVESIR 77 (119)
T ss_dssp EEEETTSEEEEECTSTTSEEEEEEEEEEEEETTTSEEEEEEEEEEEEGGGSTTG---GHSCTTEEEEEEEEEEEEGGGEE
T ss_pred CEEeCCCEEEEeCCCCCCCCEEEEEEEEEcCCCCCEEEEEEEEEeECccccccc---ccCCCCEEEEECcEeEEehhhEE
Confidence 589999999999995 7899999999999998887 99999999999999322 35667999999999999999999
Q ss_pred eeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcCC
Q 013949 210 SKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNIN 252 (433)
Q Consensus 210 gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~lp 252 (433)
|||.|++.++..+....... ..+.|||++.||+..++|.++|
T Consensus 78 gkc~V~~~~~~~~~~~~~~~-~~~~F~cr~~yd~~~~~f~~~~ 119 (119)
T PF01426_consen 78 GKCNVLHLEDYEQARPYGKE-EPDTFFCRYAYDPQKKRFKKLP 119 (119)
T ss_dssp EEEEEEEHHHHTTGCCHCHH-TTTEEEEEEEEETTTTEEEE-S
T ss_pred eeeEEEECCccccccccccC-CCCEEEEEEEEeCCcCEEeCCC
Confidence 99999999875554322212 5789999999999999999886
No 13
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.91 E-value=3.8e-24 Score=183.92 Aligned_cols=119 Identities=33% Similarity=0.584 Sum_probs=103.0
Q ss_pred CEEEeeCCEEEEEeCCC---CccEEEEEEEEeecCCCceEEEEEEeeeccccccccccCCCCCceeEeeCCcccccccce
Q 013949 132 GCLYNLGDDAYVKAEEG---AVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCI 208 (433)
Q Consensus 132 G~~Y~vGD~VyV~~~~~---~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~~d~~pl~~I 208 (433)
|++|++||+|||.+++. +++|||+|.+||++.+|..+++|+|||||+||..+. ...+++||||+|++++++|+++|
T Consensus 1 g~~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~rp~e~~~~~-~~~~~~~Elf~s~~~~~i~v~~I 79 (123)
T cd04370 1 GITYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGL-SPFALRRELFLSDHLDEIPVESI 79 (123)
T ss_pred CCEEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEchhHhcccc-ccccccceeEEecCccccCHHHh
Confidence 68999999999999864 789999999999999999999999999999996554 23589999999999999999999
Q ss_pred eeeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcC
Q 013949 209 VSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNI 251 (433)
Q Consensus 209 ~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~l 251 (433)
.|||.|++..+.............+.|||+..||+.+.+|..+
T Consensus 80 ~gkc~V~~~~~~~~~~~~~~~~~~~~f~~r~~yd~~~~~fk~~ 122 (123)
T cd04370 80 IGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYDPTTKEFKAL 122 (123)
T ss_pred ccccEEEechHhhccccccccCCCCeEEEEEEECcCcceEEeC
Confidence 9999999999765542122334568999999999999999865
No 14
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.91 E-value=4.5e-24 Score=183.59 Aligned_cols=118 Identities=31% Similarity=0.502 Sum_probs=102.0
Q ss_pred EEeeCCEEEEEeCC-CCccEEEEEEEEeecCCCc-eEEEEEEeeeccccccccccCCCCCceeEeeCCcccccccceeee
Q 013949 134 LYNLGDDAYVKAEE-GAVDYIARIVELFESVDGE-PYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSK 211 (433)
Q Consensus 134 ~Y~vGD~VyV~~~~-~~p~yIgrI~ei~e~~dg~-~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~~d~~pl~~I~gK 211 (433)
.|++||+|||.+++ .+|+|||+|.+||++.+|. .+++|+|||||+||..+. ...++++|||+|++++++|+++|.||
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~rp~e~~~~~-~~~~~~~Elf~s~~~~~i~~~~I~~k 79 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYRPEETVLEK-AALFDKNEVFLSDEYDTVPLSDIIGK 79 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEChhhccccc-cccCCCcceEEEccCccCChHHeeeE
Confidence 48999999999995 6799999999999999888 899999999999996554 33578999999999999999999999
Q ss_pred eEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcCC
Q 013949 212 AKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNIN 252 (433)
Q Consensus 212 C~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~lp 252 (433)
|+|++.++.............+.|||++.|+..+++|.++|
T Consensus 80 c~V~~~~~~~~~~~~~~~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 80 CNVLSKSDYPGLRPEGKIGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred EEEEEcchhcccccccCCCCCCeEEEEEEEccccCcccCCC
Confidence 99999998655433332235689999999999999998875
No 15
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=3.3e-24 Score=187.31 Aligned_cols=114 Identities=24% Similarity=0.319 Sum_probs=96.5
Q ss_pred CEEEeeCCEEEEEeCCC-CccEEEEEEEEeecCCCceEEEEEEeeeccccccccccCCCCCceeEeeCCcccccccceee
Q 013949 132 GCLYNLGDDAYVKAEEG-AVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVS 210 (433)
Q Consensus 132 G~~Y~vGD~VyV~~~~~-~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~~d~~pl~~I~g 210 (433)
|++|++||+|||+++++ .++|||+|.+||++.+|..+|+|+|||||+||..+. ...++++|||+|++.|++|+++|.|
T Consensus 1 ~~~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~g~~~~~v~WfyrPeEt~~~~-~~~~~~~EvF~S~~~d~~~~~~I~g 79 (121)
T cd04714 1 KEIIRVGDCVLFKSPGRPSLPYVARIESLWEDPEGNMVVRVKWYYRPEETKGGR-KPNHGEKELFASDHQDENSVQTIEH 79 (121)
T ss_pred CCEEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEEEcHHHccCcc-cccCCCCceEecCCcccccHHHhCc
Confidence 67999999999999854 788999999999999999999999999999997664 3468999999999999999999999
Q ss_pred eeEEEeeCcccchhhh--ccCCCCceEEEeeeccCCCc
Q 013949 211 KAKIAEVAANMDLEAK--QKNIPPCDLYYDMKYTLPHL 246 (433)
Q Consensus 211 KC~V~~~~~~~~~~~~--~~~~~~~~ffy~~~Y~~~~~ 246 (433)
||+|+++++....... ........|+|.+.||+...
T Consensus 80 kc~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~yn~~~~ 117 (121)
T cd04714 80 KCYVLTFAEYERLARVKKKPQDGVDFYYCAGTYNPDTG 117 (121)
T ss_pred ccEEEehhHheecccccCCCCcCCCEEEEeccCCCCcC
Confidence 9999999975543211 11234578999999999754
No 16
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=5.4e-24 Score=185.62 Aligned_cols=118 Identities=28% Similarity=0.459 Sum_probs=100.6
Q ss_pred CEEEeeCCEEEEEeCCC-CccEEEEEEEEeecCCCceEEEEEEeeeccccccccccCCCCCceeEeeCCcccccccceee
Q 013949 132 GCLYNLGDDAYVKAEEG-AVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVS 210 (433)
Q Consensus 132 G~~Y~vGD~VyV~~~~~-~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~~d~~pl~~I~g 210 (433)
|.+|++||+|||.+++. .++|||+|.+||++.+|..+|+++|||||+||..+. ...+.++|||+|++.+++|+++|.|
T Consensus 1 g~~~~vGD~V~v~~~~~~~~~~i~~I~~i~~~~~g~~~~~~~Wf~rP~et~~~~-~~~~~~~Evfls~~~d~~~~~~I~~ 79 (121)
T cd04717 1 GLQYRVGDCVYVANPEDPSKPIIFRIERLWKDEDGEKFFFGCWFYRPEETFHEP-TRKFYKNEVFKSPLYETVPVEEIVG 79 (121)
T ss_pred CCEEECCCEEEEeCCCCCCCCEEEEEeEEEECCCCCEEEEEEEEeChHHccCCC-ccccccCceEEcCccccccHHHhcC
Confidence 67899999999999854 678999999999999999999999999999995443 4568899999999999999999999
Q ss_pred eeEEEeeCcccchhhhccCCC-CceEEEeeeccCCCceeEcCC
Q 013949 211 KAKIAEVAANMDLEAKQKNIP-PCDLYYDMKYTLPHLTFSNIN 252 (433)
Q Consensus 211 KC~V~~~~~~~~~~~~~~~~~-~~~ffy~~~Y~~~~~tF~~lp 252 (433)
||+|+..++...... .... .+.|+|++.|+...+.|..+.
T Consensus 80 kc~Vl~~~~y~~~~p--~~~~~~dvy~ce~~y~~~~~~~~~~k 120 (121)
T cd04717 80 KCAVMDVKDYIKGRP--TEISEEDVYVCESRYNESAKSFKKIK 120 (121)
T ss_pred eeEEEehHHHhcCCC--CCCCCCCEEEEeEEECcccccEeccc
Confidence 999999997555421 2222 355889999999999998774
No 17
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.90 E-value=1.2e-23 Score=191.53 Aligned_cols=101 Identities=25% Similarity=0.451 Sum_probs=88.3
Q ss_pred ccccceeEEEECCEEEeeCCEEEEEeCCCCccEEEEEEEEeecCC--CceEEEEEEeeecccccccccc-CCCCCceeEe
Q 013949 120 QARCHYTQASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVD--GEPYFKARWFYRAEDTVIKDLA-YLVDRKRVFL 196 (433)
Q Consensus 120 ~~r~~Y~~~~vdG~~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~d--g~~~v~VrWFyRpeDtv~~~~~-~~~d~rELF~ 196 (433)
+.++||+++.++|++|+|||+|||++++ .++|||+|.+||++.+ |.++++|+|||||+||+.+... ..+.++|||+
T Consensus 15 ~~~~~Y~s~~~~g~~y~lGD~Vlv~s~~-~~~yIgkI~~iwe~~~~~g~~~~~v~WfyRp~E~~~~~~~~~~~~~nEvFl 93 (159)
T cd04715 15 KDGQFYRSFTYDGVEYRLYDDVYVHNGD-SEPYIGKIIKIYETAIDSGKKKVKVIWFFRPSEIRMELKGEPKRHINEVFL 93 (159)
T ss_pred CCceEEEEEEECCEEEeCCCEEEEeCCC-CCCEEEEEEEEEEcCCcCCceEEEEEeeeCHHHhccccccCcccCCCcEEE
Confidence 4567999999999999999999999866 6789999999999876 8999999999999999754322 3578999999
Q ss_pred eCCc-----ccccccceeeeeEEEeeCccc
Q 013949 197 SDVE-----DDNPLNCIVSKAKIAEVAANM 221 (433)
Q Consensus 197 S~~~-----d~~pl~~I~gKC~V~~~~~~~ 221 (433)
|++. ++||+++|.|||+|++++...
T Consensus 94 S~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~ 123 (159)
T cd04715 94 ACGRGEGLANINLLESIIGKCNVVCISEDF 123 (159)
T ss_pred ecCcCccccccCcHHHccceeEEEEehHhh
Confidence 9875 679999999999999999643
No 18
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.89 E-value=1.2e-22 Score=179.57 Aligned_cols=113 Identities=19% Similarity=0.291 Sum_probs=98.8
Q ss_pred CCEEEeeCCEEEEEeCCC-----------CccEEEEEEEEeecCCCceEEEEEEeeeccccccccccCCCCCceeEeeCC
Q 013949 131 DGCLYNLGDDAYVKAEEG-----------AVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDV 199 (433)
Q Consensus 131 dG~~Y~vGD~VyV~~~~~-----------~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~ 199 (433)
.|..|++||+|+|.+++. .++||++|.+||++.+|.+||+++|||||+||+++. .++++|||+||+
T Consensus 2 ~~~~i~vGD~V~v~~d~~~~~~~~~~~~~~~~~i~~V~~~~e~~~g~~~~h~~W~yrp~eTv~g~---~~~~~ElFLSd~ 78 (130)
T cd04712 2 HGLTIRVGDVVSVERDDADSTTKWNDDHRWLPLVQFVEYMKKGSDGSKMFHGRWLYRGCDTVLGN---YANERELFLTNE 78 (130)
T ss_pred CCCEEeCCCEEEEcCCCCCccccccccccccceEEEEEEeeecCCCceEEEEEEEEcchhccccc---cCCCceEEEecc
Confidence 578899999999999843 388999999999999999999999999999999987 899999999999
Q ss_pred ccccccc----ceeeeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcCC
Q 013949 200 EDDNPLN----CIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNIN 252 (433)
Q Consensus 200 ~d~~pl~----~I~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~lp 252 (433)
|+++|++ .|.+||.|.+...... ...+..|||...|+++.+.|..||
T Consensus 79 c~~~~~~~~~~~I~~k~~V~~~~~~~~------~~~~~~F~r~syy~~e~~~F~~l~ 129 (130)
T cd04712 79 CTCLELDLLSTEIKGVHKVDWSGTPWG------KGLPEFFVRQSYYWPERGAFTSLK 129 (130)
T ss_pred ccccccccccceeEEEEEEEEecCcCC------cCCCCEEEEEEEECccCCceEcCC
Confidence 9999999 9999999999874321 233456777777788999999987
No 19
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.86 E-value=1e-21 Score=172.28 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=91.5
Q ss_pred CCCccEEEEEEEEeecCCC-------ceEEEEEEeeeccccccccc-cCCCCCceeEeeCCcccccccceeeeeEEEeeC
Q 013949 147 EGAVDYIARIVELFESVDG-------EPYFKARWFYRAEDTVIKDL-AYLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVA 218 (433)
Q Consensus 147 ~~~p~yIgrI~ei~e~~dg-------~~~v~VrWFyRpeDtv~~~~-~~~~d~rELF~S~~~d~~pl~~I~gKC~V~~~~ 218 (433)
.++|++||||++|...+++ ..+++|+|||||+||..+.. +++.|.+|||+|+|.+++|+++|.|||.|++..
T Consensus 23 ~~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~ 102 (137)
T cd04711 23 APEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGE 102 (137)
T ss_pred CCCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEecc
Confidence 5789999999999976543 46899999999999965433 577889999999999999999999999999998
Q ss_pred cccchhhhccCCCCceEEEeeeccCCCceeEcCCC
Q 013949 219 ANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNINN 253 (433)
Q Consensus 219 ~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~lp~ 253 (433)
+....-..+....+++|||++.|+..++.|+++|+
T Consensus 103 di~~s~~~y~~~gpd~Fyf~~~Y~a~t~~F~d~p~ 137 (137)
T cd04711 103 DLPESVQEYSGGGPDRFYFLEAYNAKTKSFEDPPN 137 (137)
T ss_pred ccchhHHHHhcCCCcceEEhhhhccccCcccCCCC
Confidence 75532235666778999999999999999999984
No 20
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.84 E-value=5.2e-21 Score=169.06 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=95.3
Q ss_pred EEECCEEEeeCCEEEEEeCCCCccEEEEEEEEeecCCCceEEEEEEeeeccccccccccCCCCCceeEeeCCcccccccc
Q 013949 128 ASVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNC 207 (433)
Q Consensus 128 ~~vdG~~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~~d~~pl~~ 207 (433)
++.||+++++||||||++++ .+.|||+|.+||++.+|.++++|+||+||+|+..+.....+.++|||+|++.++||++|
T Consensus 1 ~~r~~~~i~vGD~V~v~~~~-~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~ 79 (130)
T cd04721 1 FCRNGVTISVHDFVYVLSEE-EDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVEC 79 (130)
T ss_pred CccCCEEEECCCEEEEeCCC-CCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHH
Confidence 35689999999999999877 45599999999999999999999999999999654333338999999999999999999
Q ss_pred eeeeeEEEeeCcccchhhhccC-CCCceEEEeeeccCC
Q 013949 208 IVSKAKIAEVAANMDLEAKQKN-IPPCDLYYDMKYTLP 244 (433)
Q Consensus 208 I~gKC~V~~~~~~~~~~~~~~~-~~~~~ffy~~~Y~~~ 244 (433)
|.|||+|+.............. .....|+|+..|+..
T Consensus 80 I~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~~~~d~~ 117 (130)
T cd04721 80 IDGLATVLTREHYEKFQSVPKNSSELQAYFCYRQIDNN 117 (130)
T ss_pred eeeeeEECCHHHHhhhhccccCccccccEEEEEEecCC
Confidence 9999999999875444221111 235689999988775
No 21
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.76 E-value=2.6e-18 Score=151.12 Aligned_cols=111 Identities=19% Similarity=0.303 Sum_probs=90.7
Q ss_pred EEEeeCCEEEEEeCCCCccEEEEEEEEeecCCC---ceEEEEEEeeecccccccc---ccCCCCCceeEeeCCc---ccc
Q 013949 133 CLYNLGDDAYVKAEEGAVDYIARIVELFESVDG---EPYFKARWFYRAEDTVIKD---LAYLVDRKRVFLSDVE---DDN 203 (433)
Q Consensus 133 ~~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg---~~~v~VrWFyRpeDtv~~~---~~~~~d~rELF~S~~~---d~~ 203 (433)
.+|++||||+|.+++.+++|||+|++|++..+| ...++||||||++++.... .....+++|||++++. +++
T Consensus 2 ~~i~vGd~VlI~~~d~~~~yVAkI~~i~e~~~~~~~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i 81 (128)
T cd04719 2 LTIEVGDFVLIEGEDADGPDVARILHLYEDGNEDDDPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDI 81 (128)
T ss_pred eEEecCCEEEEECCCCCCCcEeeehhhhccccCCcccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcE
Confidence 579999999999997567799999999998765 5799999999999984221 1235689999999986 589
Q ss_pred cccceeeeeEEEeeCcccchhhhccCCCCceEEEeeeccCC
Q 013949 204 PLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLP 244 (433)
Q Consensus 204 pl~~I~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~ 244 (433)
++++|.|||+|+.+++..++++.. ....+.||++..|+..
T Consensus 82 ~~etI~gkc~V~~~~~y~~l~~~~-~~~~~~~F~r~~~~~k 121 (128)
T cd04719 82 DAETIIGKVRVEPVEPKTDLPETK-KKTGGPLFVKRYWDTK 121 (128)
T ss_pred eHHHcccEEEEEEcCCccchhhhc-cccCceEEEEEEeccc
Confidence 999999999999999988875422 1335889999988763
No 22
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.70 E-value=7.6e-17 Score=149.89 Aligned_cols=124 Identities=18% Similarity=0.156 Sum_probs=98.8
Q ss_pred EEEE-CCEEEeeCCEEEEEeCCCCccEEEEEEEEeecCC-CceEEEEEEeeeccccccccccCC--------CCCceeEe
Q 013949 127 QASV-DGCLYNLGDDAYVKAEEGAVDYIARIVELFESVD-GEPYFKARWFYRAEDTVIKDLAYL--------VDRKRVFL 196 (433)
Q Consensus 127 ~~~v-dG~~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~d-g~~~v~VrWFyRpeDtv~~~~~~~--------~d~rELF~ 196 (433)
.+.- ||.+|++||+|+|+++...++|||.|.+|..... +.+.+.|+|||||.|+........ ..++|||+
T Consensus 44 l~R~~d~~~~~vGD~Vlik~~~~~~~~V~iI~ei~~~~~~~~v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElfl 123 (179)
T cd04720 44 LARDSDGLELSVGDTILVKDDVANSPSVYLIHEIRLNTLNNEVELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYL 123 (179)
T ss_pred EEEccCCeEEeCCCEEEEeCCCCCCCEEEEEEEEEeCCCCCEEEEEEEEcCCHHHcccccccccccchhcccCCCceEEE
Confidence 3444 8899999999999998667889999999998764 567999999999999943332112 33799999
Q ss_pred eCCcccccccceeeeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcC
Q 013949 197 SDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNI 251 (433)
Q Consensus 197 S~~~d~~pl~~I~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~l 251 (433)
|.+.+.+++.+|.+||+|+........... ......+|||+..|++.+..|..+
T Consensus 124 T~~~d~i~l~~Ii~k~~Vls~~ef~~~~~~-~~~~~~~F~cR~~~d~~~~~F~~~ 177 (179)
T cd04720 124 TAELSEIKLKDIIDKANVLSESEFNDLSTD-DKNGERTFFCRYACEPDGEEFVWI 177 (179)
T ss_pred ecccceEEhhheeeeEEEecHHHhhhhccc-ccCCCceEEEEEEEeCCCCeEccc
Confidence 999999999999999999988864443211 123568999999999998888654
No 23
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.67 E-value=7.5e-18 Score=150.40 Aligned_cols=96 Identities=21% Similarity=0.350 Sum_probs=84.3
Q ss_pred ccEEEEEEEEeecCCCceEEEEEEeeeccccccccccCCCCCceeEeeCCcccccccceeeeeEEEeeCcccchhhhccC
Q 013949 150 VDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKN 229 (433)
Q Consensus 150 p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~~d~~pl~~I~gKC~V~~~~~~~~~~~~~~~ 229 (433)
.+|||||++||++. |..+|+++|||||+||..+. ...+..+|||+|++.|++|+++|.|||.|+...+...+ ..
T Consensus 52 ~~~vArIekiW~~~-G~~~~~grWy~rPEET~~gr-~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY~k~----e~ 125 (148)
T cd04718 52 DLWLARIEKLWEEN-GTYWYAARWYTLPEETHMGR-QPHNLRRELYLTNDFADIEMECILRHCSVKCPKEFRDA----SN 125 (148)
T ss_pred chHHHHHHHHHhcc-CceEEEEEEEeCchhccCcc-ccccccceeeeccccccccHHHHhcccEEcCHHHcccc----cC
Confidence 46999999999986 99999999999999996654 55788999999999999999999999999999975543 23
Q ss_pred CCCceEEEeeeccCCCceeEcC
Q 013949 230 IPPCDLYYDMKYTLPHLTFSNI 251 (433)
Q Consensus 230 ~~~~~ffy~~~Y~~~~~tF~~l 251 (433)
...+.|||...|+..+++|..+
T Consensus 126 ~g~Dvy~Ce~~Yd~~~~~Fkr~ 147 (148)
T cd04718 126 DGDDVFLCEYEYDVHWQSFKRL 147 (148)
T ss_pred CCCceEEEEEEEhhhcCceeec
Confidence 4568899999999999999865
No 24
>KOG1886 consensus BAH domain proteins [Transcription]
Probab=99.49 E-value=3e-14 Score=147.01 Aligned_cols=130 Identities=21% Similarity=0.283 Sum_probs=107.4
Q ss_pred hccccceeEEEECCEEEee-CCEEEEEeC-CCCccEEEEEEEEeecCC-CceEEEEEEeeeccccccccc--cCCCCCce
Q 013949 119 LQARCHYTQASVDGCLYNL-GDDAYVKAE-EGAVDYIARIVELFESVD-GEPYFKARWFYRAEDTVIKDL--AYLVDRKR 193 (433)
Q Consensus 119 ~~~r~~Y~~~~vdG~~Y~v-GD~VyV~~~-~~~p~yIgrI~ei~e~~d-g~~~v~VrWFyRpeDtv~~~~--~~~~d~rE 193 (433)
...++||.++.+.|-.|.. +|+|.+.++ ++.|+|||+|..|+.+.. +...++|+|||||+++..+.. ....++||
T Consensus 34 ~~k~~h~~t~~~~~g~~~~~~d~vllvped~~~pPyvaii~~i~a~~~g~~~k~ev~W~YrPee~~~~~~~~~~a~~~re 113 (464)
T KOG1886|consen 34 GVKSLHFETFIYRGGRYINYGDSVLLVPEDPGKPPYVAIIEDIYAQERGGNVKVEVQWFYRPEESEGGGSGKWGAKQPRE 113 (464)
T ss_pred ccccccccceeeccCcccccCcceeecCCCCCCCCeeEEEeeeeccccCCCcceecccccCCCccCCCCCCCcccCCCcc
Confidence 4568899999999877777 999999998 688999999999998765 589999999999999965543 23477899
Q ss_pred eEeeCCcccccccceeeeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcC
Q 013949 194 VFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNI 251 (433)
Q Consensus 194 LF~S~~~d~~pl~~I~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~l 251 (433)
||+|.|.|.+++++|.++|.|.++..+..++. ......|+|++.|+..++.|..+
T Consensus 114 lF~SfH~De~~A~ti~~rC~V~fvp~~kqlp~---~~~~~~f~~r~vYd~~~~~~~~~ 168 (464)
T KOG1886|consen 114 LFLSFHEDEAFAETILHRCKVHFVPAYKQLPN---RVGHESFICRRVYDAVTSKLRKL 168 (464)
T ss_pred ccccccccchhhhhhcccceeeeccccccccc---cCCCCCcccccccccccccccCc
Confidence 99999999999999999999999997666532 23457788888888776655443
No 25
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=99.44 E-value=3.3e-14 Score=135.63 Aligned_cols=115 Identities=21% Similarity=0.171 Sum_probs=89.0
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCc-eeecCh-----hhHHHhc---CcCC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETK-VRNEAA-----DDFLSLL---KEWA 349 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~-v~~~di-----~d~~~ll---~~~~ 349 (433)
+++++++||||.|||-.+| ..|-+....+.|+|+|+.|.++|.+| |++. +-+.|| .+|+.+- -...
T Consensus 2 ~pLrVlelysg~ggmhyal----~~a~ipaqiVaAiDvNtvANevY~~N-~h~~L~k~~~I~~lt~kefd~l~~~m~lMS 76 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYAL----EDAQIPAQIVAAIDVNTVANEVYAHN-YHSNLVKTRNIQSLTVKEFDKLQANMLLMS 76 (338)
T ss_pred CceehhhhhhccchhhhhH----hhhcCchhhEEEEecchhHHHHHhcC-cccchhhccccceeeHhhhhhcccceEeeC
Confidence 6789999999999999999 44544433378999999999999999 4332 222333 4555432 1246
Q ss_pred CCCchhhcccCCCCCCcccCchHHHHHhcccccCCCCCCCCCcEEEEecccccc
Q 013949 350 KLCQYFSIYDTDKVPEQSLNFMSEDEEEEEEEENDDDSNVPNEEFEVESLTAVC 403 (433)
Q Consensus 350 ~PCQ~fS~ag~~~~~~d~r~~L~~~~~~~~~~~~~~i~~~~P~~fvvENV~gi~ 403 (433)
+|||+|...|.+++..|+|++.|.+++.++-+ -.--|+|+++|||.|+-
T Consensus 77 PpCQPfTRiG~q~D~~D~Rs~aflhil~~lP~-----~q~LPeYIL~ENVkGFE 125 (338)
T KOG0919|consen 77 PPCQPFTRIGLQRDTEDKRSDAFLHILGLLPE-----CQELPEYILMENVKGFE 125 (338)
T ss_pred CCCCchhhhcccccccCchhHHHHHHHhhhhh-----hhhhhHHHHHhhcccch
Confidence 89999999999999999999999999988321 13468999999999994
No 26
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.08 E-value=1.1e-10 Score=125.11 Aligned_cols=132 Identities=20% Similarity=0.323 Sum_probs=108.2
Q ss_pred ccceeE-EEECCEEEeeCCEEEEEeC-CCCccEEEEEEEEeecCCCceEEEEEEeeeccccccccccCCCCCceeEeeCC
Q 013949 122 RCHYTQ-ASVDGCLYNLGDDAYVKAE-EGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDV 199 (433)
Q Consensus 122 r~~Y~~-~~vdG~~Y~vGD~VyV~~~-~~~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~ 199 (433)
..|+.. +.+||..|.+||.||+.+. +...+.|++|..+|+..+|..++.++|||||+.|+ ..-...+-.+|||.+..
T Consensus 177 ~~~~~~~~~i~~~~~~~gd~vlv~~~~d~~~p~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~-H~a~r~F~k~Evfkt~~ 255 (629)
T KOG1827|consen 177 HYHELGPVEIDGTKYIVGDYVLVQNPADNLKPIVAQIERLWKLPDGEKWPQGCWIYRPEETV-HRADRKFYKQEVFKTSL 255 (629)
T ss_pred CcccCCCccccCcccccCceeeecCcccccCCceeeecccccCcccccccceeEeeCCccCc-cccccchhcccceeccc
Confidence 334445 7899999999999999998 44778999999999999999999999999999994 43345688899999999
Q ss_pred cccccccceeeeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEcCCCCC
Q 013949 200 EDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSNINNES 255 (433)
Q Consensus 200 ~d~~pl~~I~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~lp~e~ 255 (433)
..+.+++.|+|+|.|+++......... .-.....|.|...|+...+.|..+-...
T Consensus 256 ~~~~~~q~l~g~c~v~~~~~yi~~~p~-~ls~~dv~lcesRyn~~~K~f~kirsw~ 310 (629)
T KOG1827|consen 256 YRDDLVQRLLGKCYVMKPTEYISGDPE-NLSEEDVFLCESRYNEQLKKFNKIRSWK 310 (629)
T ss_pred ccccHHHHhhcceEEeehhHhhhcCcc-cccccceeeEEeeeccchhhhccccCch
Confidence 999999999999999999974443111 1133467888999999988887765554
No 27
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=98.88 E-value=1.9e-10 Score=117.57 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=97.1
Q ss_pred EEeeCCEEEEEeCCCCccEEEEEEEEeecCCCceEEEEEEeeeccccccc------------------------------
Q 013949 134 LYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIK------------------------------ 183 (433)
Q Consensus 134 ~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~------------------------------ 183 (433)
+|++||+||+.+..+.||.|-||+++..+.+|..-.+|-.|||..|+...
T Consensus 5 ~y~vgd~vYf~~sss~PYliRrIEELnKTa~GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e~e~E 84 (693)
T KOG3554|consen 5 MYRVGDYVYFENSSSNPYLIRRIEELNKTANGNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATEAEIE 84 (693)
T ss_pred cceecceEEEecCCCChHHHHHHHHHhccccCCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccchhhhh
Confidence 79999999999997789999999999999999999999999998776310
Q ss_pred c-------------ccCCCCCceeEeeCCcccccccceeeeeEEEeeCcccchhhhccCCCCceEEEeeeccCCCceeEc
Q 013949 184 D-------------LAYLVDRKRVFLSDVEDDNPLNCIVSKAKIAEVAANMDLEAKQKNIPPCDLYYDMKYTLPHLTFSN 250 (433)
Q Consensus 184 ~-------------~~~~~d~rELF~S~~~d~~pl~~I~gKC~V~~~~~~~~~~~~~~~~~~~~ffy~~~Y~~~~~tF~~ 250 (433)
+ +.+....+|||+|......|...|+|||.|..+.+...+.. +- ...+.|||...||+.-+++-.
T Consensus 85 Ee~e~p~~vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~~-YL-~~eDtFfySLVyDP~~kTLLA 162 (693)
T KOG3554|consen 85 EESECPAPVDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETESLQS-YL-EKEDTFFYSLVYDPNQKTLLA 162 (693)
T ss_pred hhccCCCcCCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHHHHh-hc-cccceeEEEeeeccchhhhhc
Confidence 0 01223458999999999999999999999999998666532 22 235789999999998887754
Q ss_pred CCCCCC
Q 013949 251 INNESN 256 (433)
Q Consensus 251 lp~e~~ 256 (433)
=.-+++
T Consensus 163 DkGeIR 168 (693)
T KOG3554|consen 163 DKGEIR 168 (693)
T ss_pred cCccee
Confidence 444444
No 28
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.89 E-value=0.0012 Score=61.94 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=44.7
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~~~ 343 (433)
.-++||||||+|++++-+ ...|..- +.+||+++.|++..+.|.- .+.+++.|+.+++.
T Consensus 50 g~~vLDLfaGsG~lglea----~srga~~--v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~ 113 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEA----LSRGAKV--AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALK 113 (189)
T ss_pred CCEEEEecCCCcHHHHHH----HhCCCCE--EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHH
Confidence 458999999999988765 4456543 5799999999999988852 34688889876653
No 29
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.76 E-value=0.0014 Score=62.40 Aligned_cols=59 Identities=34% Similarity=0.488 Sum_probs=39.3
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~~~ 343 (433)
.=+++|+|||+|.+++-+ |..+.... ++|+|+||.|.+.++.|-- ...++++|+.++..
T Consensus 102 ~e~VlD~faGIG~f~l~~---ak~~~~~~--V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPI---AKHGKAKR--VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP 166 (200)
T ss_dssp T-EEEETT-TTTTTHHHH---HHHT-SSE--EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred ceEEEEccCCccHHHHHH---hhhcCccE--EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence 349999999999999976 23233342 6899999999999988731 23578899988873
No 30
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0016 Score=61.21 Aligned_cols=60 Identities=27% Similarity=0.412 Sum_probs=51.5
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC----CCceeecChhhHHHhcC
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADDFLSLLK 346 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p----~~~v~~~di~d~~~ll~ 346 (433)
-+++||-||+|-+++|. ...|-.- +.+||+|+.|.++.+.|-. +..+.+.||.+|.....
T Consensus 47 ~~V~DlG~GTG~La~ga----~~lGa~~--V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~d 110 (198)
T COG2263 47 KTVLDLGAGTGILAIGA----ALLGASR--VLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFD 110 (198)
T ss_pred CEEEEcCCCcCHHHHHH----HhcCCcE--EEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccc
Confidence 37999999999999987 7788763 7899999999999999987 67889999999875433
No 31
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.46 E-value=0.003 Score=58.22 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=41.2
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhHHH
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFLS 343 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~~~ 343 (433)
+++|+|||+||-...| ...+-. +.|||+|+.-++..++|-- .+.++++|..++..
T Consensus 2 ~vlD~fcG~GGNtIqF----A~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~ 62 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQF----ARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK 62 (163)
T ss_dssp EEEETT-TTSHHHHHH----HHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG
T ss_pred EEEEeccCcCHHHHHH----HHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh
Confidence 5899999999999999 444433 5899999999999999942 34788899887654
No 32
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0071 Score=63.93 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=67.2
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHHHhcCcCCCCCc
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFLSLLKEWAKLCQ 353 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~~ll~~~~~PCQ 353 (433)
..-+++|||||.|.+++.| .....+ +.++|+++.|++.-+.|- -++.+..+|+++|.... |
T Consensus 293 ~~~~vlDlYCGvG~f~l~l----A~~~~~---V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~--~----- 358 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPL----AKRVKK---VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW--W----- 358 (432)
T ss_pred CCCEEEEeccCCChhhhhh----cccCCE---EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc--c-----
Confidence 4568999999999999987 333444 579999999999988873 23578889999987432 1
Q ss_pred hhhcccCCCC---CCcccCchHHHHHhcccccCCCCCCCCCc--EEEEeccccc
Q 013949 354 YFSIYDTDKV---PEQSLNFMSEDEEEEEEEENDDDSNVPNE--EFEVESLTAV 402 (433)
Q Consensus 354 ~fS~ag~~~~---~~d~r~~L~~~~~~~~~~~~~~i~~~~P~--~fvvENV~gi 402 (433)
.+..-+ .+=+|..+-..+++. +..+.|+ +.|==|..=|
T Consensus 359 ----~~~~~d~VvvDPPR~G~~~~~lk~-------l~~~~p~~IvYVSCNP~Tl 401 (432)
T COG2265 359 ----EGYKPDVVVVDPPRAGADREVLKQ-------LAKLKPKRIVYVSCNPATL 401 (432)
T ss_pred ----ccCCCCEEEECCCCCCCCHHHHHH-------HHhcCCCcEEEEeCCHHHH
Confidence 111111 123577777778877 6777777 4444444433
No 33
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.41 E-value=0.0042 Score=64.29 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=44.6
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHHH
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFLS 343 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~~ 343 (433)
-++||||||+|.+++.+ ...|-. ++++|+++.|++..+.|. .+..+++.|+.+++.
T Consensus 235 ~~vLDL~cG~G~~~l~l----a~~~~~---v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~ 295 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHC----AGPDTQ---LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFAT 295 (374)
T ss_pred CEEEEccCCccHHHHHH----hhcCCe---EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHH
Confidence 37999999999999877 334544 589999999999988875 235688899988763
No 34
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.40 E-value=0.0034 Score=52.89 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=46.3
Q ss_pred CcEEecccchhHHHHhHhhhhhcCC-CeEeeEEEeecCHhhHHHHHHcCCC------CceeecChhhHHH
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHPE------TKVRNEAADDFLS 343 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG-~~~~t~~avD~d~~A~~t~~~N~p~------~~v~~~di~d~~~ 343 (433)
.++||+|||+|-+.+.+ ...| .. +.++|+|+.+++..+.|++. ..+++.|+.++..
T Consensus 2 ~~vlD~~~G~G~~~~~~----~~~~~~~---~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~ 64 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAA----LRRGAAR---VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE 64 (117)
T ss_dssp EEEEEETSTTCHHHHHH----HHHCTCE---EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH
T ss_pred CEEEEcCcchHHHHHHH----HHHCCCe---EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh
Confidence 47999999999999877 4455 44 58999999999999999863 3688999988874
No 35
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.36 E-value=0.0038 Score=58.46 Aligned_cols=59 Identities=31% Similarity=0.338 Sum_probs=41.9
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhHHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFLS 343 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~~~ 343 (433)
...++||||||.|+|++= |..-|..- +++||.|+.|+++.+.|.- .+.+++.|+..++.
T Consensus 42 ~g~~vLDLFaGSGalGlE----ALSRGA~~--v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~ 106 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLE----ALSRGAKS--VVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL 106 (183)
T ss_dssp TT-EEEETT-TTSHHHHH----HHHTT-SE--EEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH
T ss_pred CCCeEEEcCCccCccHHH----HHhcCCCe--EEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH
Confidence 467999999999988761 13346553 6899999999999999963 24678888776653
No 36
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.35 E-value=0.0059 Score=57.98 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=41.8
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 342 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~ 342 (433)
.-++||||||+|.+++.+ ...|.. .+.++|+++.|++..+.|. .++.++++|+.+++
T Consensus 54 ~~~vLDl~~GsG~l~l~~----lsr~a~--~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 54 DARCLDCFAGSGALGLEA----LSRYAA--GATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred CCEEEEcCCCccHHHHHH----HHcCCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 348999999999999742 112222 2579999999999888874 23568888887665
No 37
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.11 E-value=0.0055 Score=62.73 Aligned_cols=59 Identities=29% Similarity=0.382 Sum_probs=47.9
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----C-CceeecChhhHHHh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----E-TKVRNEAADDFLSL 344 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~-~~v~~~di~d~~~l 344 (433)
.-+++|+|||.|-+|+-+ ...|-. +++|+|+||+|++-++.|.- + ..++++|+.++...
T Consensus 189 GE~V~DmFAGVGpfsi~~----Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~ 253 (341)
T COG2520 189 GETVLDMFAGVGPFSIPI----AKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE 253 (341)
T ss_pred CCEEEEccCCcccchhhh----hhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc
Confidence 559999999999999976 555644 26899999999999999852 2 46889999998754
No 38
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.0044 Score=56.12 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=45.6
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCC----CceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE----TKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~----~~v~~~di~d~~ 342 (433)
...+++||-||||-+|.|+ ..-+-. ++.++|||+.|.+++..|--+ ..+.+.||.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a~----sm~~~e--~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle 109 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF----SMPKNE--SVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE 109 (185)
T ss_pred cCcchhhhcCchhhhHHHh----hcCCCc--eEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh
Confidence 4568999999999999887 555555 478999999999999999653 356666766543
No 39
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.05 E-value=0.0076 Score=62.59 Aligned_cols=60 Identities=32% Similarity=0.424 Sum_probs=46.3
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d~~~ 343 (433)
.+++||+|||+|.+++=+ +.+..|+.- ++++|+|+.|++..+.|.. +..+++.|+..++.
T Consensus 45 ~~~vLD~faGsG~rgir~--a~e~~ga~~--Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~ 109 (374)
T TIGR00308 45 YINIADALSASGIRAIRY--AHEIEGVRE--VFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR 109 (374)
T ss_pred CCEEEECCCchhHHHHHH--HhhCCCCCE--EEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH
Confidence 489999999999887754 112237764 7999999999999988852 34688899887764
No 40
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.013 Score=55.25 Aligned_cols=61 Identities=26% Similarity=0.244 Sum_probs=46.2
Q ss_pred CCCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC------CCCceeecChhhHHHh
Q 013949 278 EPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDFLSL 344 (433)
Q Consensus 278 ~~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~------p~~~v~~~di~d~~~l 344 (433)
...-++||||||.|+|++ ++ ..-|... +..||.|..|+.+++.|. ..+.++..|+..++..
T Consensus 42 i~g~~~LDlFAGSGaLGl---EA-lSRGA~~--~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~ 108 (187)
T COG0742 42 IEGARVLDLFAGSGALGL---EA-LSRGAAR--VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ 108 (187)
T ss_pred cCCCEEEEecCCccHhHH---HH-HhCCCce--EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh
Confidence 456799999999998764 22 3345554 579999999999999995 3457888888877643
No 41
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.02 E-value=0.011 Score=61.69 Aligned_cols=58 Identities=34% Similarity=0.356 Sum_probs=45.1
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 342 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~ 342 (433)
..++||+|||+|.+++-+ +...|.. .++++|+|+.|++..+.|. .+..+++.|++.++
T Consensus 58 ~~~vLDl~aGsG~~~l~~---a~~~~~~--~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRY---ALETGVE--KVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL 120 (382)
T ss_pred CCEEEECCCcccHHHHHH---HHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence 358999999999999876 2345643 2689999999999998874 23458889988765
No 42
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.00 E-value=0.01 Score=61.16 Aligned_cols=55 Identities=22% Similarity=0.431 Sum_probs=43.6
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHHH
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFLS 343 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~~ 343 (433)
++||||||.|++++.|.. ++. .+.+||+++.|++..+.|. .+..+++.|+.+++.
T Consensus 209 ~vLDl~~G~G~~sl~la~-----~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 209 DLLELYCGNGNFTLALAR-----NFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred eEEEEeccccHHHHHHHh-----hCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 699999999999997732 222 2589999999999998874 245689999988764
No 43
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.97 E-value=0.01 Score=59.91 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=45.4
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~~ 343 (433)
.-++||||||.|.+++-| ...|.. +.++|+++.|++..+.|. ++..++++|+.++..
T Consensus 174 ~~~VLDl~cG~G~~sl~l----a~~~~~---V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHC----ATPGMQ---LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT 235 (315)
T ss_pred CCEEEEccCCCCHHHHHH----HhcCCE---EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH
Confidence 358999999999999877 345544 589999999999888774 346788999988763
No 44
>PHA03411 putative methyltransferase; Provisional
Probab=95.88 E-value=0.016 Score=57.81 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=46.4
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHH
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFL 342 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~ 342 (433)
-++|||+||+|.++..+.. ...+.+ +.++|+++.+++..+.|+|+..+++.|+.++.
T Consensus 66 grVLDLGcGsGilsl~la~--r~~~~~---V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~ 122 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLH--RCKPEK---IVCVELNPEFARIGKRLLPEAEWITSDVFEFE 122 (279)
T ss_pred CeEEEcCCCCCHHHHHHHH--hCCCCE---EEEEECCHHHHHHHHHhCcCCEEEECchhhhc
Confidence 3899999999999886621 122455 47999999999999999998889999998764
No 45
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.75 E-value=0.022 Score=59.85 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=44.1
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHH
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 342 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~ 342 (433)
-++||||||.|.+++-| ...+.. +.++|+++.|++..+.|. .++.++++|+.+++
T Consensus 294 ~~vLDl~cG~G~~sl~l----a~~~~~---V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPL----AKQAKS---VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred CEEEEcCCCcCHHHHHH----HHhCCE---EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 48999999999999987 333334 589999999999988874 35678999998764
No 46
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.61 E-value=0.016 Score=60.66 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=43.9
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-------CCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-------ETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-------~~~v~~~di~d~~~ 343 (433)
.-++||||||+||+++.. ...|.. .+.++|+++.|.+..+.|.- ...++++|+.+++.
T Consensus 221 g~rVLDlfsgtG~~~l~a----a~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~ 285 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSA----LMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR 285 (396)
T ss_pred CCeEEEeccCCCHHHHHH----HhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHH
Confidence 358999999999997754 334543 25799999999988887752 34688899988764
No 47
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=95.51 E-value=0.021 Score=58.74 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=43.6
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHHH
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFLS 343 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~~ 343 (433)
++||||||.|.+++.|.. .+. . +.+||+++.|++..+.|. .+..++++|+.++..
T Consensus 200 ~vlDl~~G~G~~sl~la~---~~~-~---v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQ---NFR-R---VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred cEEEEeccccHHHHHHHH---hCC-E---EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 699999999999998732 222 3 589999999999998884 235688999988764
No 48
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.43 E-value=0.013 Score=60.24 Aligned_cols=54 Identities=28% Similarity=0.406 Sum_probs=36.9
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHH
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 342 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~ 342 (433)
.+||||||+|.+|+-| ...+-. +.+||+++.|++.-+.|. .++.+++.+++++.
T Consensus 199 ~vlDlycG~G~fsl~l----a~~~~~---V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~ 257 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPL----AKKAKK---VIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFA 257 (352)
T ss_dssp EEEEES-TTTCCHHHH----HCCSSE---EEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCC
T ss_pred cEEEEeecCCHHHHHH----HhhCCe---EEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchh
Confidence 7999999999999877 333334 579999999887776663 34577888887764
No 49
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.37 E-value=0.034 Score=54.72 Aligned_cols=75 Identities=19% Similarity=0.141 Sum_probs=51.2
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHHHhcCc-----C
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFLSLLKE-----W 348 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~~ll~~-----~ 348 (433)
..-++||+|||.||.++-+..-+...| . ++|+|+++.+.+..+.|. .++.+++.|+.++...... .
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g-~---v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEG-A---IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCC-E---EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 345899999999999987632111134 3 579999999999888875 3356788888776432222 2
Q ss_pred CCCCchhhc
Q 013949 349 AKLCQYFSI 357 (433)
Q Consensus 349 ~~PCQ~fS~ 357 (433)
.+||.+.-.
T Consensus 147 D~Pcsg~G~ 155 (264)
T TIGR00446 147 DAPCSGEGV 155 (264)
T ss_pred cCCCCCCcc
Confidence 469975543
No 50
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.15 E-value=0.026 Score=63.21 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=46.3
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-------CCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-------ETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-------~~~v~~~di~d~~~ 343 (433)
.-++||||||.|++++-+ ...|..- +.+||+++.|++..+.|+. ...++++|+.+++.
T Consensus 539 g~rVLDlf~gtG~~sl~a----a~~Ga~~--V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~ 603 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHA----ALGGAKS--TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK 603 (702)
T ss_pred CCeEEEcCCCCCHHHHHH----HHCCCCE--EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH
Confidence 348999999999999876 4457652 5799999999999988862 34688899988764
No 51
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.12 E-value=0.03 Score=54.86 Aligned_cols=73 Identities=25% Similarity=0.307 Sum_probs=51.0
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC--CCceeecChhhHHH-hc-C-----cCCC
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP--ETKVRNEAADDFLS-LL-K-----EWAK 350 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p--~~~v~~~di~d~~~-ll-~-----~~~~ 350 (433)
..++||||||+|.+++.+.. ...|.+ ++++|+++.|++..+.|.. +..+++.|+.+... .+ . -..+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~--~~~~~~---v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA--ALDGIE---LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHH--hCCCCE---EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECC
Confidence 35899999999999998721 234555 4799999999999998853 24678888765432 11 1 1246
Q ss_pred CCchhhc
Q 013949 351 LCQYFSI 357 (433)
Q Consensus 351 PCQ~fS~ 357 (433)
||.+.+.
T Consensus 162 Py~~~~~ 168 (251)
T TIGR03704 162 PYVPTDA 168 (251)
T ss_pred CCCCchh
Confidence 8987654
No 52
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.98 E-value=0.035 Score=50.59 Aligned_cols=55 Identities=24% Similarity=0.290 Sum_probs=44.2
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC---CCceeecChhhHH
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADDFL 342 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p---~~~v~~~di~d~~ 342 (433)
-++||++||.|.++.-+ ...+.+ ++++|+|+.+++..+.|+. +..++++|+.++.
T Consensus 15 ~~vLEiG~G~G~lt~~l----~~~~~~---v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~ 72 (169)
T smart00650 15 DTVLEIGPGKGALTEEL----LERAAR---VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD 72 (169)
T ss_pred CEEEEECCCccHHHHHH----HhcCCe---EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC
Confidence 48999999999999977 333444 5799999999999999875 4568888887653
No 53
>PHA03412 putative methyltransferase; Provisional
Probab=94.89 E-value=0.04 Score=53.85 Aligned_cols=59 Identities=22% Similarity=0.124 Sum_probs=46.1
Q ss_pred CCcEEecccchhHHHHhHhhhhh-cCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGAS-LSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~-~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~ 341 (433)
..++|||.||.|.+++.+-.-+. ..... +.++|+|+.|++.-+.|.+.+.+++.|+.+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~---V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~ 109 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE---IVCVELNHTYYKLGKRIVPEATWINADALTT 109 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE---EEEEECCHHHHHHHHhhccCCEEEEcchhcc
Confidence 46999999999999987621100 11233 5799999999999999999999999988654
No 54
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=94.44 E-value=0.065 Score=47.74 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=45.3
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc-----CCCCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N-----~p~~~v~~~di~d~~ 342 (433)
...++|||-||.|.+...|-. ....+.+ ++++|+++.+++..+.+ +++..++++|+.++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~-~~~~~~~---i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~ 67 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK-ELNPGAK---IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP 67 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH-HSTTTSE---EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC
T ss_pred CCCEEEEecCcCcHHHHHHHH-hcCCCCE---EEEEECcHHHHHHhhcccccccccccceEEeehhccc
Confidence 467999999999999998821 0123556 47999999999988874 445688999998854
No 55
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=94.18 E-value=0.057 Score=57.11 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=43.9
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 342 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~ 342 (433)
..++||||||.|.+++.| ...+.. +.++|+++.|++..+.|. .+..++++|+.++.
T Consensus 298 ~~~VLDlgcGtG~~sl~l----a~~~~~---V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPL----ARQAAE---VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred CCEEEEEeccCCHHHHHH----HHhCCE---EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence 358999999999999887 333434 579999999999888774 34678889987654
No 56
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.94 E-value=0.085 Score=49.21 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=42.2
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~ 341 (433)
.-++||++||+|.++..+.. ...+.. +.++|+++.+++..+.|. ++..+++.|+.+.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~--~~~~~~---V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGL--LCPKGR---VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHH--HCCCCE---EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence 34899999999999887621 112344 579999999999888774 3456788888654
No 57
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.72 E-value=0.11 Score=43.16 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=44.0
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC------CCCceeecCh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAA 338 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~------p~~~v~~~di 338 (433)
.-++|||=||.|.++.-|.. ...|.++ .++|+++.+.+..+.|. ++..+++.|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~--~~~~~~v---~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALAR--LFPGARV---VGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHH--HHTTSEE---EEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcCCHHHHHHHh--cCCCCEE---EEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 34899999999999998821 2378884 69999999999999987 3457888988
No 58
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=93.68 E-value=0.1 Score=47.83 Aligned_cols=56 Identities=32% Similarity=0.315 Sum_probs=42.2
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC----C-CceeecChh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----E-TKVRNEAAD 339 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p----~-~~v~~~di~ 339 (433)
..-++|||.||+|.+++.+ ...+-.. .+.++|+++.|.+..+.|.. + ..+++.|+-
T Consensus 31 ~~~~vLDlG~G~G~i~~~l----a~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~ 91 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLAL----AKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLF 91 (170)
T ss_dssp TTCEEEEETSTTSHHHHHH----HHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT
T ss_pred cCCeEEEecCChHHHHHHH----HHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCcccccccccccc
Confidence 4558999999999999987 4444443 36899999999999988753 2 456666663
No 59
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=93.27 E-value=0.094 Score=52.35 Aligned_cols=43 Identities=33% Similarity=0.443 Sum_probs=35.6
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 329 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p 329 (433)
++|||.||+|.+++++ ...+-+. .++|+|+++.|++.-+.|-.
T Consensus 113 ~ilDlGTGSG~iai~l----a~~~~~~-~V~a~Dis~~Al~~A~~Na~ 155 (280)
T COG2890 113 RILDLGTGSGAIAIAL----AKEGPDA-EVIAVDISPDALALARENAE 155 (280)
T ss_pred cEEEecCChHHHHHHH----HhhCcCC-eEEEEECCHHHHHHHHHHHH
Confidence 8999999999999998 4455432 36899999999999988853
No 60
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=93.21 E-value=0.085 Score=55.89 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=51.6
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhhHHHh--c--CcCCC
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFLSL--L--KEWAK 350 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d~~~l--l--~~~~~ 350 (433)
.-++||++||.||.++-+...+...| . ++|+|+++.+.+..+.|.. .+.+++.|+.++... + --.+.
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~-~---V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~ 326 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRG-Q---ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDA 326 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCc-E---EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcC
Confidence 45899999999999986632111122 4 5899999999988887753 346777888765411 0 01346
Q ss_pred CCchhhccc
Q 013949 351 LCQYFSIYD 359 (433)
Q Consensus 351 PCQ~fS~ag 359 (433)
||.+.....
T Consensus 327 Pcsg~g~~~ 335 (445)
T PRK14904 327 PCTGTGVLG 335 (445)
T ss_pred CCCCcchhh
Confidence 998876654
No 61
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=93.16 E-value=0.12 Score=54.57 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=50.7
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCC----CceeecChhhHHHhcC-------c
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE----TKVRNEAADDFLSLLK-------E 347 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~----~~v~~~di~d~~~ll~-------~ 347 (433)
..-++|||+||.||.++-+.. ...+.. ++++|+++.+.+..+.|... ..+++.|+.++..... -
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~--~~~~~~---v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILE--LAPQAQ---VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHH--HcCCCE---EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence 345899999999999987721 112333 58999999999999888642 3577888876543211 1
Q ss_pred CCCCCchhhc
Q 013949 348 WAKLCQYFSI 357 (433)
Q Consensus 348 ~~~PCQ~fS~ 357 (433)
..+||-+...
T Consensus 319 ~D~Pcs~~G~ 328 (427)
T PRK10901 319 LDAPCSATGV 328 (427)
T ss_pred ECCCCCcccc
Confidence 2459976543
No 62
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=93.12 E-value=0.19 Score=53.17 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCcEEecccchhHHHHhHhhhhhcC--CCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhhHHHhcC-c----
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFLSLLK-E---- 347 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~a--G~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d~~~ll~-~---- 347 (433)
.-++||++||.||.++-+. ... +.. ++|+|+++...+..+.|.. .+.+++.|+.++..... .
T Consensus 238 g~~VLD~cagpGgkt~~la---~~~~~~g~---V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIA---ELMKDQGK---ILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCEEEEeCCCccHHHHHHH---HHcCCCCE---EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEE
Confidence 4589999999999998762 332 334 5799999999999988853 34677888877652211 1
Q ss_pred -CCCCCchhhccc
Q 013949 348 -WAKLCQYFSIYD 359 (433)
Q Consensus 348 -~~~PCQ~fS~ag 359 (433)
...||.++-...
T Consensus 312 l~DaPCsg~G~~~ 324 (431)
T PRK14903 312 LVDAPCTSLGTAR 324 (431)
T ss_pred EECCCCCCCcccc
Confidence 246997775543
No 63
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=92.93 E-value=0.18 Score=47.24 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=41.9
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC------CCCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~------p~~~v~~~di~d~~ 342 (433)
..-++||+.||+|.+++.+. ...|-.. ++.++|+++.+.+..+.|. .+..+++.|+.++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a---~~~~~~~-~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS---LLVGETG-KVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH---HHhCCCC-EEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence 34589999999999998762 3333221 2589999999988766552 23567778887654
No 64
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=92.93 E-value=0.11 Score=55.09 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=50.3
Q ss_pred CCcEEecccchhHHHHhHhhhhhcC--CCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHHHhcC-c----
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFLSLLK-E---- 347 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~a--G~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~~ll~-~---- 347 (433)
.-++||++||.||+++-+. ... +-. +.++|+++.+.+..+.|. .++.+++.|+.++...+. .
T Consensus 251 g~~VLDlgaG~G~~t~~la---~~~~~~~~---v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIA---ELLKNTGK---VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCEEEEeCCCCCHHHHHHH---HHhCCCCE---EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEE
Confidence 3489999999999998773 222 223 579999999999888774 235678888876532111 1
Q ss_pred -CCCCCchhhcc
Q 013949 348 -WAKLCQYFSIY 358 (433)
Q Consensus 348 -~~~PCQ~fS~a 358 (433)
..+||.++...
T Consensus 325 l~D~Pcsg~G~~ 336 (444)
T PRK14902 325 LVDAPCSGLGVI 336 (444)
T ss_pred EEcCCCCCCeee
Confidence 34699866543
No 65
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=92.89 E-value=0.15 Score=53.87 Aligned_cols=75 Identities=21% Similarity=0.277 Sum_probs=50.9
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhhHHHhc----Cc---
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFLSLL----KE--- 347 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d~~~ll----~~--- 347 (433)
.-++||++||.||.++-+. ...+-.. .+.|+|+++..++..+.|.. ++.+++.|+.++.... ..
T Consensus 253 g~~VLDl~ag~G~kt~~la---~~~~~~g-~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIA---ELMGDQG-EIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred cCEEEEeCCCCchhHHHHH---HHhCCCc-eEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCE
Confidence 4589999999999998773 3322111 25799999999998887752 3567888887764211 11
Q ss_pred --CCCCCchhhcc
Q 013949 348 --WAKLCQYFSIY 358 (433)
Q Consensus 348 --~~~PCQ~fS~a 358 (433)
...||.+....
T Consensus 329 Vl~DaPCSg~G~~ 341 (434)
T PRK14901 329 ILLDAPCSGLGTL 341 (434)
T ss_pred EEEeCCCCccccc
Confidence 24599875443
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.84 E-value=0.21 Score=41.27 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=41.7
Q ss_pred EEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC----CCCceeecChhhHHH
Q 013949 283 LLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----PETKVRNEAADDFLS 343 (433)
Q Consensus 283 ~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~----p~~~v~~~di~d~~~ 343 (433)
+|||=||.|-....|...+ .+|... ..+++|+++.+.+..+.++ +.+++++.|+.++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~-~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~ 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSS-RVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------S-EEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccc-eEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc
Confidence 6899999999998884333 336332 3689999999999888887 677899999988763
No 67
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=92.73 E-value=0.056 Score=54.30 Aligned_cols=43 Identities=28% Similarity=0.480 Sum_probs=37.0
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
=.++|||||+|=+.+-| +-.+|... ++|+|+||.+.+.++.|-
T Consensus 196 eviVDLYAGIGYFTlpf---lV~agAk~--V~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPF---LVTAGAKT--VFACEWNPWSVEALRRNA 238 (351)
T ss_pred chhhhhhcccceEEeeh---hhccCccE--EEEEecCHHHHHHHHHHH
Confidence 47999999999988844 26789885 899999999999999985
No 68
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.32 E-value=0.19 Score=52.33 Aligned_cols=58 Identities=29% Similarity=0.359 Sum_probs=41.3
Q ss_pred CCCcEEecccchh--HHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC--CC-----CceeecChhhHH
Q 013949 279 PEMSLLDLYSGCG--AMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH--PE-----TKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~G--G~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~--p~-----~~v~~~di~d~~ 342 (433)
.++++||-+||+| |+...+ +.+|+. .+|++|+|+.|++..+.|. .+ +.+.+.|++.++
T Consensus 49 ~~~~~lDalaasGvR~iRy~~----E~~~~~--~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAK----ELAGVD--KVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHH----H-SSEC--EEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH
T ss_pred CCceEEeccccccHHHHHHHH----HcCCCC--EEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh
Confidence 4689999999999 455544 557766 3799999999999999993 21 357788998877
No 69
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=92.02 E-value=0.21 Score=50.72 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=42.2
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~ 342 (433)
+.-++||+|||.|++..-+ ...|.. +.++|+|+.+...-+.|. ++..+++.|+.++.
T Consensus 182 ~g~~vLDp~cGtG~~liea----a~~~~~---v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEA----GLMGAK---VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP 243 (329)
T ss_pred CcCEEEECCCCCCHHHHHH----HHhCCe---EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence 3458999999999987643 345666 479999999888777764 33467788887653
No 70
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=91.98 E-value=0.16 Score=50.63 Aligned_cols=44 Identities=36% Similarity=0.320 Sum_probs=35.9
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
...++||+||.|.+|+++- +..+ + .++.|+|.++.|...-..|-
T Consensus 149 ~~~ildlgtGSGaIslsll---~~L~-~-~~v~AiD~S~~Ai~La~eN~ 192 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLL---HGLP-Q-CTVTAIDVSKAAIKLAKENA 192 (328)
T ss_pred cceEEEecCCccHHHHHHH---hcCC-C-ceEEEEeccHHHHHHHHHHH
Confidence 3479999999999999983 3344 3 35789999999999998884
No 71
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=91.69 E-value=0.21 Score=49.34 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=44.8
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC--CCCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH--PETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~--p~~~v~~~di~d~ 341 (433)
.-++||+-||.|.++.-| ...|-+ +.++|+|+.+++..+.|+ ++..++++|+.++
T Consensus 43 ~~~VLEiG~G~G~lt~~L----~~~~~~---v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~ 99 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPL----LERAAK---VTAVEIDRDLAPILAETFAEDNLTIIEGDALKV 99 (272)
T ss_pred cCeEEEeCCCccHHHHHH----HHhCCc---EEEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence 458999999999999988 333444 479999999999999887 4567888988765
No 72
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=91.30 E-value=0.25 Score=45.65 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=39.7
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAAD 339 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~ 339 (433)
.-++||+.||+|.++..+.. ...+.+ +.++|+++.+++..+.|. ++..++++|+.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~--~~~~~~---v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~ 91 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAAL--QFPSLQ---VTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP 91 (187)
T ss_pred CCEEEEECCcCCHHHHHHHH--HCCCCE---EEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence 45899999999999988721 122344 579999999998887764 23456666653
No 73
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=91.22 E-value=0.27 Score=47.89 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=44.0
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC---CCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p---~~~v~~~di~d~ 341 (433)
.-++||+.||.|.++..| ...+-. +.++|+|+.+++..+.+++ +..+++.|+.++
T Consensus 30 ~~~VLEiG~G~G~lt~~L----~~~~~~---v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPL----LKRAKK---VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKV 87 (253)
T ss_pred cCEEEEeCCCCCHHHHHH----HHhCCc---EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcC
Confidence 458999999999999988 444444 5799999999999998863 457788888654
No 74
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=90.99 E-value=0.4 Score=45.23 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=44.2
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecCh-hhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAA-DDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di-~d~~ 342 (433)
...++|||.||.|.++..|.. ...+.. ++++|+++.+++..+.|. ++..+++.|+ +.+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~--~~p~~~---v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~ 104 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK--ANPDIN---FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL 104 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH--HCCCcc---EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH
Confidence 456899999999999988721 223334 589999999988887653 4567889999 6654
No 75
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=90.99 E-value=0.3 Score=47.85 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=43.7
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC---CCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p---~~~v~~~di~d~ 341 (433)
.-++||+.||.|.++..| ...+.+ +.++|+|+.+++..+.++. +..++++|+.++
T Consensus 30 ~~~VLEIG~G~G~lt~~L----~~~~~~---v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~ 87 (258)
T PRK14896 30 GDPVLEIGPGKGALTDEL----AKRAKK---VYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV 87 (258)
T ss_pred cCeEEEEeCccCHHHHHH----HHhCCE---EEEEECCHHHHHHHHHHhccCCCEEEEEeccccC
Confidence 358999999999999988 333545 4799999999999988754 457888888654
No 76
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=90.82 E-value=0.49 Score=50.74 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=53.0
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhhHHHhcC------c
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFLSLLK------E 347 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d~~~ll~------~ 347 (433)
...+|||++||.||-++-+ ++.+.+--. ++|+|+++.-++.++.|.- ++.+.+.|...+...+. .
T Consensus 113 pg~~VLD~CAAPGgKTt~l--a~~l~~~g~--lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQI--AALMNNQGA--IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCEEEEeCCCccHHHHHH--HHHcCCCCE--EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEE
Confidence 4568999999999999977 222222112 5799999999999998853 44677788876643221 1
Q ss_pred CCCCCchhhccc
Q 013949 348 WAKLCQYFSIYD 359 (433)
Q Consensus 348 ~~~PCQ~fS~ag 359 (433)
.+.||.+--...
T Consensus 189 vDaPCSG~G~~r 200 (470)
T PRK11933 189 LDAPCSGEGTVR 200 (470)
T ss_pred EcCCCCCCcccc
Confidence 346998765443
No 77
>PRK14967 putative methyltransferase; Provisional
Probab=90.77 E-value=0.42 Score=45.60 Aligned_cols=56 Identities=27% Similarity=0.386 Sum_probs=41.0
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC----CCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p----~~~v~~~di~d~ 341 (433)
.-++||++||.|.++.-+ ...|.. .+.++|+++.+.+..+.|.. +..+++.|+.+.
T Consensus 37 ~~~vLDlGcG~G~~~~~l----a~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~ 96 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAA----AAAGAG--SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA 96 (223)
T ss_pred CCeEEEecCCHHHHHHHH----HHcCCC--eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh
Confidence 358999999999998866 334652 25799999999987776642 346777787654
No 78
>PRK06202 hypothetical protein; Provisional
Probab=90.75 E-value=0.44 Score=45.55 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=43.9
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC--CCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP--ETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p--~~~v~~~di~d~ 341 (433)
...++|||-||.|+++..|..-+...|... .+.++|+++.+++..+.+.. +..+...+++++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l 123 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRL-EVTAIDPDPRAVAFARANPRRPGVTFRQAVSDEL 123 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCc-EEEEEcCCHHHHHHHHhccccCCCeEEEEecccc
Confidence 456999999999999887743223346543 36899999999998888753 345555555544
No 79
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=90.73 E-value=0.34 Score=45.82 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=41.1
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 340 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d 340 (433)
...++||+.||.|.++.-+ ...+.. +.++|+++.++...+.+.+ ...+.+.|+.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~l----a~~~~~---v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIEL----AKRGAI---VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred CCCEEEEEeCCCCHHHHHH----HHCCCE---EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 3568999999999998876 344655 4799999999988877654 23456666654
No 80
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=90.50 E-value=0.64 Score=36.21 Aligned_cols=55 Identities=27% Similarity=0.370 Sum_probs=39.5
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc-----CCCCceeecChhhHH
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADDFL 342 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N-----~p~~~v~~~di~d~~ 342 (433)
+++|+.||.|+++..+. ...+.+ .+++|+++.+....+.+ .+...+++.|+.++.
T Consensus 1 ~ildig~G~G~~~~~~~---~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (107)
T cd02440 1 RVLDLGCGTGALALALA---SGPGAR---VTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60 (107)
T ss_pred CeEEEcCCccHHHHHHh---cCCCCE---EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc
Confidence 58999999999998873 223334 58999999988877621 223467778887765
No 81
>KOG2730 consensus Methylase [General function prediction only]
Probab=90.27 E-value=0.28 Score=47.51 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=45.4
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----C-CCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----P-ETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p-~~~v~~~di~d~~ 342 (433)
..-.++|-|||+||-.+=| .+-|-. +.++||||--+..-++|- | .+.++++|.-|+-
T Consensus 94 ~~~~iidaf~g~gGntiqf----a~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQF----ALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHH----HHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence 4568999999999999877 566766 479999999888888885 2 2478999886654
No 82
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=90.27 E-value=0.44 Score=45.19 Aligned_cols=56 Identities=21% Similarity=0.173 Sum_probs=44.6
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 340 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d 340 (433)
.-++||+=||.|-+...|.. ...|.+ +.++|+++.+++..+.++|+..+++.|+.+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~--~~~~~~---v~giDiS~~~l~~A~~~~~~~~~~~~d~~~ 99 (204)
T TIGR03587 44 IASILELGANIGMNLAALKR--LLPFKH---IYGVEINEYAVEKAKAYLPNINIIQGSLFD 99 (204)
T ss_pred CCcEEEEecCCCHHHHHHHH--hCCCCe---EEEEECCHHHHHHHHhhCCCCcEEEeeccC
Confidence 34799999999999988821 123555 479999999999999999988788877654
No 83
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=90.19 E-value=0.41 Score=47.10 Aligned_cols=60 Identities=27% Similarity=0.337 Sum_probs=45.2
Q ss_pred CCcEEecccchhHHHHhHhhhhhc-CCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhHHHhc
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFLSLL 345 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~-aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~~~ll 345 (433)
.-++|||.||+|.+++-+ |.. .-.++ .+||+++.+.+--+.|.. .+.+++.|+.++....
T Consensus 45 ~~~IlDlGaG~G~l~L~l---a~r~~~a~I---~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 45 KGRILDLGAGNGALGLLL---AQRTEKAKI---VGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL 111 (248)
T ss_pred CCeEEEecCCcCHHHHHH---hccCCCCcE---EEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence 669999999999999877 233 22554 699999887776666632 3589999999987643
No 84
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=90.06 E-value=0.47 Score=47.31 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=41.5
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 340 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d 340 (433)
..++|||+||.|.++..+.. ...+.+ +.++|+++.|++..+.|.. ...+++.|+.+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~--~~~~~~---v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~ 183 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAY--AFPEAE---VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA 183 (284)
T ss_pred CCEEEEEeCchhHHHHHHHH--HCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 35899999999999998832 223455 4799999999998888742 24577788743
No 85
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=89.70 E-value=0.56 Score=45.24 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=44.1
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~ 341 (433)
.-++||+=||.|.++.-| ...|.. +.++|+++.+++..+.+.+...+++.|++++
T Consensus 43 ~~~vLDiGcG~G~~~~~l----~~~~~~---v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~ 97 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYW----RERGSQ---VTALDLSPPMLAQARQKDAADHYLAGDIESL 97 (251)
T ss_pred CCeEEEeeCCCCHHHHHH----HHcCCe---EEEEECCHHHHHHHHhhCCCCCEEEcCcccC
Confidence 457999999999988766 445665 4799999999999999887666778887654
No 86
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=89.31 E-value=0.53 Score=43.13 Aligned_cols=53 Identities=26% Similarity=0.248 Sum_probs=40.3
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC----CCCceeecChhh
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----PETKVRNEAADD 340 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~----p~~~v~~~di~d 340 (433)
-++|||.||.|.++..+ ...|.. +.++|+++.+.+..+.|. ....+++.|+.+
T Consensus 21 ~~vLdlG~G~G~~~~~l----~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~ 77 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRL----KGKGKC---ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK 77 (179)
T ss_pred CeEEEeCCChhHHHHHH----HhcCCE---EEEEECCHHHHHHHHHHHHHcCCceEEEEccccc
Confidence 47999999999999877 445544 579999999998887764 234566777654
No 87
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=89.23 E-value=0.49 Score=44.04 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc-----CCCCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N-----~p~~~v~~~di~d~ 341 (433)
..++||+-||.|.++.-|. ....+.+ +.++|+++.+.+..+.| .++..++++|++++
T Consensus 43 ~~~vLDiGcGtG~~s~~la--~~~~~~~---V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~ 104 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA--IARPELK---LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF 104 (181)
T ss_pred CCeEEEecCCCCccHHHHH--HHCCCCe---EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc
Confidence 5689999999998887662 1122334 57999999877655543 34567888998875
No 88
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=89.02 E-value=0.57 Score=45.85 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=47.4
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCC-----CceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE-----TKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~-----~~v~~~di~d~~ 342 (433)
+..++||+.||.|=+++.+ ++..| .. .+.++|+++..++.-+....+ ..++.+|++.+.
T Consensus 51 ~g~~vLDva~GTGd~a~~~---~k~~g-~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLL---AKSVG-TG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP 114 (238)
T ss_pred CCCEEEEecCCccHHHHHH---HHhcC-Cc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence 5789999999999999988 35666 43 378999999999998888765 456788887654
No 89
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=89.01 E-value=0.45 Score=50.09 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=48.2
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCC----Cce--eecChhhHHHh--cC-----
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE----TKV--RNEAADDFLSL--LK----- 346 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~----~~v--~~~di~d~~~l--l~----- 346 (433)
.-++||++||.||.++-+. ...| .. .++|+|+++..++..+.|... ..+ ...|...+... ..
T Consensus 239 g~~VLDlcag~G~kt~~la---~~~~-~~-~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 239 EETILDACAAPGGKTTHIL---ELAP-QA-QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCeEEEeCCCccHHHHHHH---HHcC-CC-eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 4589999999999998762 3333 21 258999999999999888642 122 34444322210 00
Q ss_pred cCCCCCchhhccc
Q 013949 347 EWAKLCQYFSIYD 359 (433)
Q Consensus 347 ~~~~PCQ~fS~ag 359 (433)
-.+.||.++...+
T Consensus 314 llDaPcSg~G~~~ 326 (426)
T TIGR00563 314 LLDAPCSATGVIR 326 (426)
T ss_pred EEcCCCCCCcccc
Confidence 1245999887655
No 90
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=89.01 E-value=0.91 Score=43.92 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=45.8
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~ 341 (433)
..-++||+-||.|.++.-|.. ...+.. +.++|+++.+++..+.++++..++..|+.++
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~--~~~~~~---v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~ 88 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVE--RWPAAR---ITGIDSSPAMLAEARSRLPDCQFVEADIASW 88 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHH--HCCCCE---EEEEECCHHHHHHHHHhCCCCeEEECchhcc
Confidence 345899999999999877621 222444 5799999999999999998888888888754
No 91
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=88.91 E-value=0.64 Score=44.50 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=33.3
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK 325 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~ 325 (433)
.-++||+.||.|--+.-| ...|+++ .|+|+++.|++.+.
T Consensus 35 ~~rvLd~GCG~G~da~~L----A~~G~~V---~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWL----AEQGHRV---LGVELSEIAVEQFF 73 (213)
T ss_pred CCeEEEeCCCchhHHHHH----HhCCCeE---EEEeCCHHHHHHHH
Confidence 359999999999888777 6789995 69999999999753
No 92
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=88.86 E-value=0.73 Score=46.99 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=43.2
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC---C---CCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---P---ETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~---p---~~~v~~~di~d~~ 342 (433)
...++||+-||.|.++.-| ...|.+ ++++|+++.+++..+.+. + ...++++|++++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~L----a~~g~~---V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~ 193 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPL----ARMGAT---VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA 193 (322)
T ss_pred CCCEEEEeeCCCCHHHHHH----HHcCCE---EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh
Confidence 3468999999999998876 446776 479999999988887653 1 3457777777653
No 93
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=88.81 E-value=0.65 Score=47.23 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 329 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p 329 (433)
...++||+.||.|.++.-| ...|.++ .++|+++.+++..+.|.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~l----a~~g~~V---~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPL----ALEGAIV---SASDISAAMVAEAERRAK 187 (315)
T ss_pred CCCEEEEecCCCCHHHHHH----HHCCCEE---EEEECCHHHHHHHHHHHH
Confidence 3569999999999999888 4567774 799999999988877754
No 94
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=88.67 E-value=1 Score=43.75 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=45.4
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~~ 342 (433)
...++||+-||.|.++..| ...|.++ .++|+++.+++..+.+.. ...+++.|+.++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~l----a~~g~~v---~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKL----AELGHQV---ILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred CCCEEEEeCCCchHHHHHH----HHcCCEE---EEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 4569999999999999888 4567774 699999999888877642 3467888988775
No 95
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=88.65 E-value=1.1 Score=37.35 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=38.8
Q ss_pred CcEEecccchhHHHHhHhhhhhc-CCCeEeeEEEeecCHhhHHHHHHc-----CCCCceeecChhh
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADD 340 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~-aG~~~~t~~avD~d~~A~~t~~~N-----~p~~~v~~~di~d 340 (433)
.++|||.||.|.++.=|. .. .+.+ ++++|+++.+++..+.| +++..+++.|+.+
T Consensus 21 ~~vldlG~G~G~~~~~l~---~~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAA---RLVPNGR---VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPE 80 (124)
T ss_pred CEEEEeCCCCCHHHHHHH---HHCCCce---EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccc
Confidence 489999999999988662 32 2334 58999999988877655 2445666666654
No 96
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=88.04 E-value=0.87 Score=42.68 Aligned_cols=55 Identities=24% Similarity=0.200 Sum_probs=40.7
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~ 341 (433)
..++||+-||.|.++.-| ...|+++ .++|+++.+++..+.+. .+..+...|+.++
T Consensus 31 ~~~vLDiGcG~G~~a~~L----a~~g~~V---~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~ 90 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYL----AANGFDV---TAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL 90 (197)
T ss_pred CCcEEEECCCCCHHHHHH----HHCCCEE---EEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC
Confidence 458999999999999877 4568774 79999999888776553 2344555666544
No 97
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=87.91 E-value=0.52 Score=47.63 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=41.6
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhh
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 340 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d 340 (433)
.++||++||.|.++..+.. ...+.. +.++|+++.|.+.-+.|.. ...+++.|+.+
T Consensus 135 ~~VLDlG~GsG~iai~la~--~~p~~~---V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 195 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAY--AFPDAE---VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA 195 (307)
T ss_pred CEEEEEechhhHHHHHHHH--HCCCCE---EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence 4899999999999988721 222445 5799999999999988842 25677888754
No 98
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=87.60 E-value=0.76 Score=45.63 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=40.7
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----C-CceeecChhh
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----E-TKVRNEAADD 340 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~-~~v~~~di~d 340 (433)
.++|||+||.|.+++.+.. ...+.+ +.++|+++.|++..+.|.. + ..++++|+.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~--~~~~~~---v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAY--EFPNAE---VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred CEEEEEeccHhHHHHHHHH--HCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence 5899999999999888732 223455 4799999999998888732 2 4567777643
No 99
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=87.59 E-value=0.68 Score=45.06 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=40.9
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAAD 339 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~ 339 (433)
...++||+.||.|.++..+.. ...... +.++|+++.|++..+.|.. +..+++.|+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~--~~~~~~---v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAK--ERPDAE---VTAVDISPEALAVARRNAKHGLGARVEFLQGDWF 168 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHH--HCCCCE---EEEEECCHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 456899999999998887721 112234 5899999999999888743 3467777763
No 100
>PRK04266 fibrillarin; Provisional
Probab=87.34 E-value=1.1 Score=43.36 Aligned_cols=57 Identities=12% Similarity=0.110 Sum_probs=40.4
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc---CCCCceeecChhh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN---HPETKVRNEAADD 340 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N---~p~~~v~~~di~d 340 (433)
+..++||+-||+|+++..|. ...| .- +++++|+++.+.+.+..+ .+++.++.+|+.+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la---~~v~-~g-~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~ 131 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVS---DIVE-EG-VVYAVEFAPRPMRELLEVAEERKNIIPILADARK 131 (226)
T ss_pred CCCEEEEEccCCCHHHHHHH---HhcC-CC-eEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCC
Confidence 34589999999999998873 3333 21 368999999877755443 3456677788764
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=86.88 E-value=1.2 Score=42.27 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=41.6
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~ 341 (433)
..-++||+.||.|.++.-|. ...+-.. .++++|+++.+.+..+.|. .+..+++.|+.+.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la---~~~~~~g-~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLA---EIVGRDG-LVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred CcCEEEEECCCccHHHHHHH---HHhCCCC-EEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC
Confidence 44699999999999998663 3333321 2579999999888777664 3456777777543
No 102
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=86.62 E-value=0.91 Score=45.62 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=42.8
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-------CCceeecChhhHHHh
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-------ETKVRNEAADDFLSL 344 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-------~~~v~~~di~d~~~l 344 (433)
-++|||||=.||+|+.. ..+|..- +..||.+..|.+..+.|+- ...++.+|+-+++..
T Consensus 125 krvLnlFsYTGgfsv~A----a~gGA~~--v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~ 189 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAA----AAGGAKE--VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR 189 (286)
T ss_dssp CEEEEET-TTTHHHHHH----HHTTESE--EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH
T ss_pred CceEEecCCCCHHHHHH----HHCCCCE--EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH
Confidence 49999999999999854 5678653 5799999999998888742 225788999887654
No 103
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=86.62 E-value=1 Score=43.82 Aligned_cols=45 Identities=29% Similarity=0.463 Sum_probs=36.0
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 329 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p 329 (433)
...++||+-||.|.++..+ ...|..- +.++|+++.+++.-+.|..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~----~~~g~~~--v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAA----AKLGAKK--VLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CCCEEEEeCCcHHHHHHHH----HHcCCCe--EEEEECCHHHHHHHHHHHH
Confidence 4568999999999888866 5566552 5899999999998888753
No 104
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=86.22 E-value=1.1 Score=44.79 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=35.5
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 329 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p 329 (433)
...++||+.||.|.++..+ ...|.. .+.++|+++.|.+.-+.|..
T Consensus 159 ~g~~VLDvGcGsG~lai~a----a~~g~~--~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAA----LKLGAA--KVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CCCEEEEeCCChhHHHHHH----HHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence 3469999999999998876 445654 26899999999988887753
No 105
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=86.08 E-value=1.1 Score=42.47 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=40.6
Q ss_pred CCcEEecccchhHHHHhHhhhhhcC--CCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~a--G~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~ 341 (433)
.-++||+.||.|.++.-|. +.. +.. +.++|+++.+++..+.|. ++..+++.|+.++
T Consensus 46 ~~~vLDiGcG~G~~~~~la---~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 108 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALA---EAVGPEGH---VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL 108 (231)
T ss_pred CCEEEEeCCCcCHHHHHHH---HHhCCCCE---EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC
Confidence 4589999999999887662 222 234 579999999888777664 3456777777654
No 106
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=85.99 E-value=1 Score=45.54 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=38.7
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
...++||+=||.|-++.+. ...|..- +.|+|+|+.|.++-+.|.
T Consensus 162 ~g~~vlDvGcGSGILaIAa----~kLGA~~--v~g~DiDp~AV~aa~eNa 205 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAA----AKLGAKK--VVGVDIDPQAVEAARENA 205 (300)
T ss_pred CCCEEEEecCChhHHHHHH----HHcCCce--EEEecCCHHHHHHHHHHH
Confidence 5679999999999999976 7788774 689999999999998884
No 107
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=85.90 E-value=0.76 Score=49.39 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=55.0
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC----C-CCceeecChhhHHHhcCcCCCCCchh
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----P-ETKVRNEAADDFLSLLKEWAKLCQYF 355 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~----p-~~~v~~~di~d~~~ll~~~~~PCQ~f 355 (433)
-.++|+|||.|-+++.+ ..|+.- +.+||+++.|+.--+.|- + +++++++-++++...+ ..++|..-
T Consensus 385 k~llDv~CGTG~iglal-----a~~~~~--ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl--~~~~~~~~ 455 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLAL-----ARGVKR--VIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSL--LTPCCDSE 455 (534)
T ss_pred cEEEEEeecCCceehhh-----hccccc--eeeeecChhhcchhhhcchhcCccceeeeecchhhccchh--cccCCCCC
Confidence 57999999999998876 346664 689999998887776663 2 4578888777765322 23445444
Q ss_pred h-cccCCCCCCcccCchHHHHHhc
Q 013949 356 S-IYDTDKVPEQSLNFMSEDEEEE 378 (433)
Q Consensus 356 S-~ag~~~~~~d~r~~L~~~~~~~ 378 (433)
+ .+. .+-+|..|-..++..
T Consensus 456 ~~v~i----iDPpR~Glh~~~ik~ 475 (534)
T KOG2187|consen 456 TLVAI----IDPPRKGLHMKVIKA 475 (534)
T ss_pred ceEEE----ECCCcccccHHHHHH
Confidence 4 222 222345555555555
No 108
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=85.82 E-value=1.3 Score=44.65 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=42.6
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC------CCCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~------p~~~v~~~di~d~ 341 (433)
.-++||+-||.|.++.-| ...+-+ ++++|+|+.+++..+.|+ ++..++++|+.++
T Consensus 37 ~~~VLEIG~G~G~LT~~L----l~~~~~---V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKL----LQLAKK---VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred cCEEEEecCchHHHHHHH----HHhCCc---EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 348999999999999877 333444 579999999999888764 3457888988654
No 109
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=85.74 E-value=1.1 Score=43.12 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=33.0
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK 325 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~ 325 (433)
.-++||+.||.|--+.-| ...|+++ .|||+++.|++.+.
T Consensus 38 ~~rvL~~gCG~G~da~~L----A~~G~~V---~avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWL----AEQGHEV---LGVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHH----HhCCCeE---EEEccCHHHHHHHH
Confidence 359999999999887766 5679995 69999999999863
No 110
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=85.62 E-value=1.3 Score=45.19 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=36.7
Q ss_pred CCCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 278 EPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 278 ~~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
....++|||=||+|++..-| |+...|+.+ .|+|||+.|++.-+.|.
T Consensus 113 ~~~~~vLDIGtGag~I~~lL--a~~~~~~~~---~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLI--GVHEYGWRF---VGSDIDPQALASAQAII 158 (321)
T ss_pred CCCceEEEecCCccHHHHHH--HhhCCCCEE---EEEeCCHHHHHHHHHHH
Confidence 35679999999999888765 445567775 69999999999888773
No 111
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.59 E-value=0.79 Score=44.13 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=27.8
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK 325 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~ 325 (433)
..-+++|+|||.|++++.+ ...+.. ++++|+++.....++
T Consensus 20 ~~~~~vepF~G~g~V~~~~----~~~~~~---vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNL----KQPGKR---VIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-------SSE---EEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHh----cccccc---eeeeechHHHHHHHH
Confidence 3558999999999998865 334555 589999998888777
No 112
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=85.41 E-value=1.1 Score=45.33 Aligned_cols=43 Identities=30% Similarity=0.385 Sum_probs=35.7
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
.-++||+=||.|-++++. ...|..- +.|+|+|+.|+++-+.|.
T Consensus 162 g~~vLDvG~GSGILaiaA----~klGA~~--v~a~DiDp~Av~~a~~N~ 204 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAA----AKLGAKK--VVAIDIDPLAVEAARENA 204 (295)
T ss_dssp TSEEEEES-TTSHHHHHH----HHTTBSE--EEEEESSCHHHHHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHH----HHcCCCe--EEEecCCHHHHHHHHHHH
Confidence 349999999999999865 6778873 689999999999988884
No 113
>PRK14968 putative methyltransferase; Provisional
Probab=84.97 E-value=1.2 Score=40.43 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=33.5
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
.-++||+.||.|.++..+ ...|.+ +.++|+++.+.+..+.|.
T Consensus 24 ~~~vLd~G~G~G~~~~~l----~~~~~~---v~~~D~s~~~~~~a~~~~ 65 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVA----AKNGKK---VVGVDINPYAVECAKCNA 65 (188)
T ss_pred CCEEEEEccccCHHHHHH----Hhhcce---EEEEECCHHHHHHHHHHH
Confidence 347999999999998887 333666 479999999988887664
No 114
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=84.35 E-value=1.1 Score=41.70 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=37.5
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCe------EeeEEEeecCHhhHHHHHHcCCC------CceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVK------LVTRWAIDINPHACKSLKFNHPE------TKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~------~~t~~avD~d~~A~~t~~~N~p~------~~v~~~di~d~~ 342 (433)
..-.+||-|||+|++-+=. +.....+. ....+++|+++.++..-+.|... +.+.+.|+.++.
T Consensus 28 ~~~~vlDP~CGsGtiliEa--a~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEA--ALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp TTS-EEETT-TTSHHHHHH--HHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred CCCEEeecCCCCCHHHHHH--HHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 3458999999999987521 11222322 01157999999999999888642 245566777665
No 115
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=84.16 E-value=1.1 Score=46.89 Aligned_cols=43 Identities=26% Similarity=0.266 Sum_probs=32.6
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
-++|||.||.|-+++-+. ...-+.+ +.++|+++.|++.-+.|.
T Consensus 230 ~~VLDLGCGtGvi~i~la--~~~P~~~---V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--DKNPQAK---VVFVDESPMAVASSRLNV 272 (378)
T ss_pred CeEEEEeccccHHHHHHH--HhCCCCE---EEEEECCHHHHHHHHHHH
Confidence 389999999999988761 1112445 579999999988888764
No 116
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=84.10 E-value=1.2 Score=42.36 Aligned_cols=52 Identities=23% Similarity=0.071 Sum_probs=37.8
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~ 341 (433)
.-++|||-||.|+++.-+. +..|-.. ++.|||+++ ..+.|++.++++|+.+.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~---~~~~~~~-~V~aVDi~~------~~~~~~v~~i~~D~~~~ 103 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAV---TQIGDKG-RVIACDILP------MDPIVGVDFLQGDFRDE 103 (209)
T ss_pred CCEEEEEcccCCHHHHHHH---HHcCCCc-eEEEEeccc------ccCCCCcEEEecCCCCh
Confidence 3489999999999987662 3333221 257999998 23457788999999874
No 117
>PRK04148 hypothetical protein; Provisional
Probab=84.07 E-value=2.5 Score=37.83 Aligned_cols=52 Identities=21% Similarity=0.143 Sum_probs=40.8
Q ss_pred CCCcEEecccchhH-HHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChh
Q 013949 279 PEMSLLDLYSGCGA-MSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAAD 339 (433)
Q Consensus 279 ~~l~~lDLFsG~GG-~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~ 339 (433)
...+++|+=+|.|. ++.-| ...|+++ .|+|+++.|++..+.+. +.+...|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L----~~~G~~V---iaIDi~~~aV~~a~~~~--~~~v~dDlf 68 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL----KESGFDV---IVIDINEKAVEKAKKLG--LNAFVDDLF 68 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH----HHCCCEE---EEEECCHHHHHHHHHhC--CeEEECcCC
Confidence 34689999999775 66656 6789985 69999999999888874 456777775
No 118
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=83.93 E-value=2.3 Score=39.70 Aligned_cols=68 Identities=24% Similarity=0.289 Sum_probs=59.6
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHHHhcCcCCC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLSLLKEWAK 350 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~~ll~~~~~ 350 (433)
..+.+|+|=.|.|-+...+ ..-|+....+.++|++++-...+...+|+.+++++|+.++...+.+...
T Consensus 48 sglpVlElGPGTGV~TkaI----L~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 48 SGLPVLELGPGTGVITKAI----LSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred cCCeeEEEcCCccHhHHHH----HhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence 5789999999999999887 6678887788999999999999999999999999999999866665544
No 119
>PLN02244 tocopherol O-methyltransferase
Probab=83.93 E-value=1.5 Score=44.76 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=41.0
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC------CCCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------PETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~------p~~~v~~~di~d~ 341 (433)
..-++||+-||.|+++.-|. ...|.++ .++|+++.+++..+.+. +...++..|+.++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La---~~~g~~v---~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~ 180 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLA---RKYGANV---KGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ 180 (340)
T ss_pred CCCeEEEecCCCCHHHHHHH---HhcCCEE---EEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC
Confidence 44589999999999998772 3336664 69999998887665542 2356777777654
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=82.87 E-value=1.9 Score=41.77 Aligned_cols=61 Identities=16% Similarity=0.005 Sum_probs=43.8
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhHHHh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFLSL 344 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~~~l 344 (433)
.-++||+.+|+|..++.|..+....| + +.++|+++.+.+..+.|+. ...++.+|+.+++..
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g-~---v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDG-R---ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ 135 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCC-E---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence 34899999999987776632222233 4 4799999999998888863 246788898877643
No 121
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=82.75 E-value=1.4 Score=45.35 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=36.1
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC----CCCceeecCh
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----PETKVRNEAA 338 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~----p~~~v~~~di 338 (433)
++|||.||.|.++.-+.. ...+.+ +.++|+++.|.+.-+.|. ....++..|+
T Consensus 199 ~VLDlGCG~G~ls~~la~--~~p~~~---v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~ 254 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLAR--HSPKIR---LTLSDVSAAALESSRATLAANGLEGEVFASNV 254 (342)
T ss_pred eEEEeccCcCHHHHHHHH--hCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCEEEEccc
Confidence 799999999999987721 223445 579999998887766543 2334555554
No 122
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=82.39 E-value=1.9 Score=42.33 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=41.2
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC--------CCCceeecChhhHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH--------PETKVRNEAADDFL 342 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~--------p~~~v~~~di~d~~ 342 (433)
..++||+-||.|.++.-| +...|-.. .+.++|+++.+.+..+.+. ++..+++.|++++.
T Consensus 74 ~~~VLDlGcGtG~~~~~l---a~~~~~~~-~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLL---SEKVGSDG-KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred CCEEEEECCcCCHHHHHH---HHHhCCCC-EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 458999999999988755 13334221 2579999999988876543 34567778877653
No 123
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=82.15 E-value=2.3 Score=39.52 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=42.6
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC---CCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p---~~~v~~~di~d~ 341 (433)
...++||+.||.|.++.-+. ..+.......++|+++.++...+.+.+ ...+++.|+.++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~----~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELA----KSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEAL 100 (223)
T ss_pred CCCeEEEeCCCCChhHHHHH----HhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcC
Confidence 45699999999999988772 222210125899999999988888764 346777777654
No 124
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=82.07 E-value=1 Score=47.49 Aligned_cols=57 Identities=32% Similarity=0.497 Sum_probs=46.3
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------C-CceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------E-TKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~-~~v~~~di~d~~ 342 (433)
..=.+-|+|||+|=+++-+ ..-|.. ++|+|.|+.+.+-++.|.+ . ..+++.|+.+|+
T Consensus 249 ~gevv~D~FaGvGPfa~Pa----~kK~cr---V~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPA----AKKGCR---VYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CcchhhhhhcCcCccccch----hhcCcE---EEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 4447899999999888755 445533 6899999999999999986 2 478899999887
No 125
>PRK10742 putative methyltransferase; Provisional
Probab=81.85 E-value=2.5 Score=41.69 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=44.1
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCC--------------CceeecChhhHHHh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE--------------TKVRNEAADDFLSL 344 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~--------------~~v~~~di~d~~~l 344 (433)
.+++||+|+|-|.++.=+ ...|..+ .++|.++.++..++.|.-. +.+++.|..+++..
T Consensus 89 ~p~VLD~TAGlG~Da~~l----as~G~~V---~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~ 160 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVL----ASVGCRV---RMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_pred CCEEEECCCCccHHHHHH----HHcCCEE---EEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence 469999999999988754 4568884 6999999999888766432 34667888777754
No 126
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=81.63 E-value=2 Score=40.99 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=40.9
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADD 340 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d 340 (433)
..++||+.||.|.+..-+.. ...+.. +.++|+++.+++..+.|.. ++.+++.|+.+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~--~~~~~~---v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAK--ERPDAR---VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHH--HCCCCE---EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence 45899999999999887732 222444 5799999999988877642 35677777754
No 127
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=81.37 E-value=2 Score=45.55 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=40.8
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC----CCceeecChhh
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADD 340 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p----~~~v~~~di~d 340 (433)
-++|||+||.|.++..|. ....+.+ +.++|+++.|.+..+.|.. +..++++|+.+
T Consensus 253 ~rVLDLGcGSG~IaiaLA--~~~p~a~---VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVA--LERPDAF---VRASDISPPALETARKNAADLGARVEFAHGSWFD 311 (423)
T ss_pred CEEEEEeChhhHHHHHHH--HhCCCCE---EEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc
Confidence 389999999999998772 1223455 4799999999999988742 34677777743
No 128
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=81.07 E-value=2 Score=46.50 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=40.5
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAAD 339 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~ 339 (433)
..++||+.||.|.+++.+. ....+.+ +.++|+++.|++..+.|.. ...+++.|+-
T Consensus 139 ~~~VLDlG~GsG~iai~la--~~~p~~~---v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~ 199 (506)
T PRK01544 139 FLNILELGTGSGCIAISLL--CELPNAN---VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWF 199 (506)
T ss_pred CCEEEEccCchhHHHHHHH--HHCCCCe---EEEEECCHHHHHHHHHHHHHcCCccceeeeecchh
Confidence 3589999999999998772 1234555 4799999999999988842 2456667653
No 129
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=80.77 E-value=2.1 Score=40.35 Aligned_cols=44 Identities=30% Similarity=0.439 Sum_probs=35.5
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 329 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p 329 (433)
...++||+.||.|.++..| ...|.. +.++|+++.+++..+.+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l----~~~~~~---v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPL----ARRGAK---VVASDISPQMVEEARERAP 106 (230)
T ss_pred CCCEEEEEeCCCCHHHHHH----HHcCCE---EEEEECCHHHHHHHHHHHH
Confidence 4569999999999998877 445665 4799999999888877653
No 130
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=80.76 E-value=2.3 Score=41.27 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=42.3
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~ 341 (433)
..++|||=||.|.+...|...+...+.+ +.++|+++.+++.-+.|.. ...++++|+.++
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~---v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~ 121 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCK---IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI 121 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCe---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC
Confidence 4589999999999887762211123556 4799999999988877753 346777887664
No 131
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=80.50 E-value=2.9 Score=39.07 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=41.6
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-CCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-ETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-~~~v~~~di~d~ 341 (433)
..++|||-||.|.++.-| ...|... .+.++|+++.+.+..+.+.+ ...++..|++++
T Consensus 35 ~~~vLDlG~G~G~~~~~l----~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~ 92 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRAL----LKRFPQA-EFIALDISAGMLAQAKTKLSENVQFICGDAEKL 92 (240)
T ss_pred CCeEEEECCCccHHHHHH----HHhCCCC-cEEEEeChHHHHHHHHHhcCCCCeEEecchhhC
Confidence 468999999999998876 3344332 35899999999887777664 345667777654
No 132
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=80.37 E-value=2.7 Score=40.80 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=37.8
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~ 342 (433)
...++|||.||.|-++.-|. ...|-.. .+.++|+++..++.-+... .++.+.++|++++.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~---~~~~~~~-~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp 111 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELA---RRVGPNG-KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP 111 (233)
T ss_dssp S--EEEEET-TTSHHHHHHG---GGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--
T ss_pred CCCEEEEeCCChHHHHHHHH---HHCCCcc-EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc
Confidence 45699999999999998772 4444332 2579999999888877653 24577888887764
No 133
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=80.27 E-value=2.6 Score=41.31 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=46.2
Q ss_pred CCCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCC----ceeecChhhHHH
Q 013949 278 EPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPET----KVRNEAADDFLS 343 (433)
Q Consensus 278 ~~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~----~v~~~di~d~~~ 343 (433)
...+++||.=||.|-+|.-| ...|..+ .++|+++.++++-+..-... .+.+..++++..
T Consensus 58 l~g~~vLDvGCGgG~Lse~m----Ar~Ga~V---tgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~ 120 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPL----ARLGASV---TGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS 120 (243)
T ss_pred CCCCeEEEecCCccHhhHHH----HHCCCee---EEecCChHHHHHHHHhhhhccccccchhhhHHHHHh
Confidence 46789999999999888877 7889774 69999999999988765432 355666666653
No 134
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=80.19 E-value=3 Score=38.85 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=42.7
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc-----CCCCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N-----~p~~~v~~~di~d~~~ 343 (433)
..++||+-||.|.++..|.. ...+.. +.++|+++.+++..+.| ..+..+++.|+.++..
T Consensus 17 ~~~ilDiGcG~G~~~~~la~--~~p~~~---v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~ 80 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAK--QNPDKN---FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD 80 (194)
T ss_pred CceEEEeCCCccHHHHHHHH--hCCCCC---EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH
Confidence 45899999999999988721 223444 47999999876655443 3456788999988753
No 135
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=79.85 E-value=3.3 Score=38.86 Aligned_cols=58 Identities=22% Similarity=0.169 Sum_probs=41.5
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFL 342 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~ 342 (433)
..++||+=||+|.++.-+.. ...+.+ +.++|+++.+++..+.|. ++..+++.|+.++.
T Consensus 46 g~~VLDiGcGtG~~al~la~--~~~~~~---V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~ 108 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAI--ARPELK---VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG 108 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHH--HCCCCe---EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC
Confidence 56899999999998887621 233455 579999988776665542 23577888887753
No 136
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.51 E-value=2.3 Score=44.11 Aligned_cols=57 Identities=28% Similarity=0.343 Sum_probs=43.0
Q ss_pred CCcEEecccchh--HHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCG--AMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~G--G~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d~~~ 343 (433)
..+++|-|||.| |+...+ .+|.. . ++++||+|.|+++.+.|.- +..+++.|++.++.
T Consensus 53 ~~~v~DalsatGiRgIRya~-----E~~~~-~-v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~ 116 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAV-----ETGVV-K-VVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH 116 (380)
T ss_pred CeEEeecccccchhHhhhhh-----hcCcc-E-EEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH
Confidence 679999999998 455443 34553 2 6999999999999988842 34677788887764
No 137
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=79.31 E-value=4.3 Score=41.05 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=46.5
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCC--CeEeeEEEeecCHhhHHHHHHcCC---CCceeecChhhHHHhc
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADDFLSLL 345 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG--~~~~t~~avD~d~~A~~t~~~N~p---~~~v~~~di~d~~~ll 345 (433)
.-.+||.=||.||.+..|. +..+ .. +.|+|.|+.|.+..+.+.. ...+++.|..++...+
T Consensus 20 g~~vlD~TlG~GGhS~~il---~~~~~~g~---VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAIL---ERLGPKGR---LIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred CCEEEEeCcCChHHHHHHH---HhCCCCCE---EEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 4589999999999999983 3332 34 5899999999999887652 4578888888876554
No 138
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=79.12 E-value=2.2 Score=41.84 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=45.8
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC---CCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p---~~~v~~~di~d~~ 342 (433)
....+||+..|.|.++.-| ...|-+ +.++|+|+..++.++..+. +..++++|+-++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L----~~~~~~---v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTREL----LKRGKR---VIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD 89 (262)
T ss_dssp TTSEEEEESSTTSCCHHHH----HHHSSE---EEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC
T ss_pred CCCEEEEeCCCCccchhhH----hcccCc---ceeecCcHhHHHHHHHHhhhcccceeeecchhccc
Confidence 4679999999999999988 445544 5799999999999999664 5688999987654
No 139
>PRK00811 spermidine synthase; Provisional
Probab=78.79 E-value=4 Score=40.68 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=44.2
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC----------CCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----------ETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p----------~~~v~~~di~d~~~ 343 (433)
.-++|+|-+|.|++..-+ ++..++.- +.+||+|+...+..+.+++ ...++.+|+..++.
T Consensus 77 p~~VL~iG~G~G~~~~~~---l~~~~~~~--V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~ 145 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREV---LKHPSVEK--ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA 145 (283)
T ss_pred CCEEEEEecCchHHHHHH---HcCCCCCE--EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh
Confidence 348999999999998765 13345542 5799999998888887654 35688899888764
No 140
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=78.77 E-value=4.9 Score=38.11 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=41.1
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC----CCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p----~~~v~~~di~d~~ 342 (433)
...++||+.||.|.++.-+ ...|.. +.++|+++.+.+..+.|.. ...+...|+.++.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l----~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 108 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESM----ARLGAD---VTGIDASEENIEVARLHALESGLKIDYRQTTAEELA 108 (233)
T ss_pred CCCeEEEeCCCCCHHHHHH----HHcCCe---EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh
Confidence 4568999999999988766 445665 4799999998877766543 2345566666654
No 141
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=78.73 E-value=2.9 Score=39.43 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCC--CeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADD 340 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG--~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d 340 (433)
..-++||+.||.|.++.-|. +..+ -. ++++|+++.+.+.-+.|+. ...+++.|..+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la---~~~~~~g~---V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCA---EAIERRGK---VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred CCCEEEEECcCccHHHHHHH---HhcCCCCE---EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 34589999999999987662 2222 23 5799999987766665542 13566777654
No 142
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=78.46 E-value=3.8 Score=39.78 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE 330 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~ 330 (433)
...++||+-||.|+++.-| ...|..- +.|+|+++.....-..++|.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l----~~~ga~~--v~avD~~~~~l~~~l~~~~~ 120 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCA----LQKGAKE--VYGVDVGYNQLAEKLRQDER 120 (228)
T ss_pred CCCEEEEcccCCCHHHHHH----HHcCCCE--EEEEeCCHHHHHHHHhcCCC
Confidence 3458999999999999977 5567653 68999999666653333454
No 143
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=77.76 E-value=3.4 Score=38.26 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=28.4
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK 325 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~ 325 (433)
.=.|||.|+|.|-... +|.+.|-+. .++|+++..++.-+
T Consensus 192 gdiVlDpF~GSGTT~~----aa~~l~R~~---ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAV----AAEELGRRY---IGIEIDEEYCEIAK 230 (231)
T ss_dssp T-EEEETT-TTTHHHH----HHHHTT-EE---EEEESSHHHHHHHH
T ss_pred ceeeehhhhccChHHH----HHHHcCCeE---EEEeCCHHHHHHhc
Confidence 3479999999986554 447889885 69999999988654
No 144
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=76.50 E-value=3.4 Score=41.02 Aligned_cols=52 Identities=27% Similarity=0.254 Sum_probs=38.7
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC----CCCceeecChhh
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH----PETKVRNEAADD 340 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~----p~~~v~~~di~d 340 (433)
++||+=||.|.++.-| ...|+++ .|+|+++.|++..+.|. .+..+...|+.+
T Consensus 123 ~vLDlGcG~G~~~~~l----a~~g~~V---~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~ 178 (287)
T PRK12335 123 KALDLGCGQGRNSLYL----ALLGFDV---TAVDINQQSLENLQEIAEKENLNIRTGLYDINS 178 (287)
T ss_pred CEEEeCCCCCHHHHHH----HHCCCEE---EEEECCHHHHHHHHHHHHHcCCceEEEEechhc
Confidence 8999999999998877 4568774 79999999988776553 234455556544
No 145
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=76.41 E-value=4.1 Score=40.00 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=45.0
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcC-CCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~a-G~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~ 341 (433)
...++||+=||.|.+...|....... +.. +.++|+++.+.+.-+.++|+..+...|+.++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~---v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l 145 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQ---LFGLDISKVAIKYAAKRYPQVTFCVASSHRL 145 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCe---EEEECCCHHHHHHHHHhCCCCeEEEeecccC
Confidence 34579999999999988773211111 223 5799999999999999999888888887654
No 146
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=76.29 E-value=5.8 Score=40.98 Aligned_cols=81 Identities=26% Similarity=0.286 Sum_probs=54.6
Q ss_pred CCCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhhHHHhcC------
Q 013949 278 EPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFLSLLK------ 346 (433)
Q Consensus 278 ~~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d~~~ll~------ 346 (433)
++.-+|||++|+.||=++=+-+-+..-|.. ++|+|+++.-.+.++.|.. ++.+.+.|...+.....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~i---V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAI---VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCce---EEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 355799999999999998773222222333 4799999999999999964 23466666654432221
Q ss_pred --cCCCCCchhhcccCC
Q 013949 347 --EWAKLCQYFSIYDTD 361 (433)
Q Consensus 347 --~~~~PCQ~fS~ag~~ 361 (433)
..+.||.+.-...+.
T Consensus 232 ~iLlDaPCSg~G~irr~ 248 (355)
T COG0144 232 RILLDAPCSGTGVIRRD 248 (355)
T ss_pred EEEECCCCCCCcccccC
Confidence 135699988776543
No 147
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=75.56 E-value=2.3 Score=39.30 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=35.2
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 340 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d 340 (433)
.-++||+=||.|+++.-+.. ...+-. .++++|+++.. ..++..+++.|+.+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~--~~~~~~--~v~~vDis~~~------~~~~i~~~~~d~~~ 83 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVE--QVGGKG--RVIAVDLQPMK------PIENVDFIRGDFTD 83 (188)
T ss_pred CCEEEEecCCCCHHHHHHHH--HhCCCc--eEEEEeccccc------cCCCceEEEeeCCC
Confidence 45899999999999887631 211211 25899999854 34667777778754
No 148
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=75.40 E-value=3.7 Score=43.10 Aligned_cols=58 Identities=19% Similarity=0.206 Sum_probs=46.7
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-------CCceeecChhhHHHh
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-------ETKVRNEAADDFLSL 344 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-------~~~v~~~di~d~~~l 344 (433)
=++|+|||=.||+|+-. ..+|..- +..||++..|.+.-+.|+- ...++++|+-+++..
T Consensus 219 krvLNlFsYTGgfSv~A----a~gGA~~--vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~ 283 (393)
T COG1092 219 KRVLNLFSYTGGFSVHA----ALGGASE--VTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRK 283 (393)
T ss_pred CeEEEecccCcHHHHHH----HhcCCCc--eEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHH
Confidence 37999999999999854 7789842 4699999999999999962 136888999877654
No 149
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=75.17 E-value=3.7 Score=43.80 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=41.8
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHH----cC--CCCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF----NH--PETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~----N~--p~~~v~~~di~d~~ 342 (433)
....|+|+=||-|.++.-.-.++..+|..+ .++|||.|+.|+.+++. |. ..++++++|++++.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~-~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~ 254 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAV-KVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE 254 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCES-EEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCe-EEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC
Confidence 357899999999999975422223334343 37999999999988743 32 23589999998764
No 150
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=75.14 E-value=3.5 Score=44.59 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=36.5
Q ss_pred CCCcEEecccchhHHHHhHhhhhhc----CCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASL----SGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~----aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
...++||.+||+|+|-.++-.-... .++.+ .++++|+|+.|+...+.|.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~-~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVEL-NIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCccccee-eeeeechhHHHHHHHHHHH
Confidence 4579999999999999887332211 13444 4799999999999888774
No 151
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=74.81 E-value=6.1 Score=37.48 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=40.2
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 340 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d 340 (433)
..-++||+.||.|.++.-|. +..|-.. .++++|+++...+..+.|. .+..+.++|...
T Consensus 76 ~g~~VLdIG~GsG~~t~~la---~~~~~~~-~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA---EIVGKSG-KVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred CcCEEEEECCcccHHHHHHH---HhcCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence 34689999999999997662 3333221 2579999998888777764 235667777643
No 152
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=74.59 E-value=6 Score=38.88 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCC---CceeecChh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE---TKVRNEAAD 339 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~---~~v~~~di~ 339 (433)
+..++||+=||.|+.+.-|. ...|.+ +.++|+++.+++..+.+.+. ..+.+.|+.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la---~~~~~~---v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~ 109 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN---EKYGAH---VHGVDICEKMVNIAKLRNSDKNKIEFEANDIL 109 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH---hhcCCE---EEEEECCHHHHHHHHHHcCcCCceEEEECCcc
Confidence 45689999999999887662 334655 47999999998888877643 455566654
No 153
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=74.07 E-value=3.8 Score=40.80 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCCcEEecccchhHHHHhHhhhh-----hcCCCeEeeEEEeecCHhhHHHHHHc
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGA-----SLSGVKLVTRWAIDINPHACKSLKFN 327 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga-----~~aG~~~~t~~avD~d~~A~~t~~~N 327 (433)
..-+++|.+||.|||-+.+..-. ...... .+++|+++.++..-+.|
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~---i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEIN---IYGIEIDPEAVALAKLN 96 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEE---EEEEES-HHHHHHHHHH
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccce---eEeecCcHHHHHHHHhh
Confidence 45589999999999987762211 013344 58999999998877665
No 154
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=73.99 E-value=6.9 Score=36.26 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=37.9
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADD 340 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d 340 (433)
..++||+.||.|.+..-|. ...+.. ++++|+++.+.+..+.+. ..+++.|+.+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~---~~~~~~---~~giD~s~~~i~~a~~~~--~~~~~~d~~~ 66 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLR---DEKQVR---GYGIEIDQDGVLACVARG--VNVIQGDLDE 66 (194)
T ss_pred CCEEEEeCCCCCHHHHHHH---hccCCc---EEEEeCCHHHHHHHHHcC--CeEEEEEhhh
Confidence 3489999999999887662 223444 479999998887776542 4566777765
No 155
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=73.93 E-value=5.1 Score=37.57 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=41.0
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCC--CeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSG--VKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG--~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~ 341 (433)
...++||+-||.|.++.-+. ...+ .+ +.++|+++.+.+..+.+.. ...++..|+.++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~---~~~~~~~~---v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALA---KAVGKTGE---VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHH---HHcCCCCe---EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 35799999999999988762 2222 33 5899999998888887753 345666666554
No 156
>PRK06922 hypothetical protein; Provisional
Probab=73.83 E-value=6.2 Score=44.09 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=42.5
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC----CCceeecChhhHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADDFL 342 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p----~~~v~~~di~d~~ 342 (433)
..++||+.||.|.++..|.. ...+.+ +.++|+++.+++..+.+.+ +..++++|+.++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~--~~P~~k---VtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp 480 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEE--ETEDKR---IYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS 480 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHH--hCCCCE---EEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc
Confidence 46899999999999877622 234555 4799999999988877643 3456778877643
No 157
>PRK08317 hypothetical protein; Provisional
Probab=73.69 E-value=5.3 Score=37.19 Aligned_cols=56 Identities=21% Similarity=0.162 Sum_probs=38.8
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcC--CCeEeeEEEeecCHhhHHHHHHc----CCCCceeecChhh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLS--GVKLVTRWAIDINPHACKSLKFN----HPETKVRNEAADD 340 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~a--G~~~~t~~avD~d~~A~~t~~~N----~p~~~v~~~di~d 340 (433)
...++||+-||.|.++..+. ... +.+ +.++|+++.....-+.+ .+...+...|+.+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a---~~~~~~~~---v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 80 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELA---RRVGPEGR---VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG 80 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHH---HhcCCCcE---EEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 34689999999999988772 222 234 57999999887777665 2344566666654
No 158
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=73.32 E-value=7.4 Score=30.42 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=37.7
Q ss_pred EecccchhHHHHhHhhhhhcC-CCeEeeEEEeecCHhhHHHHHHcCCCC--ceeecChhhH
Q 013949 284 LDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNHPET--KVRNEAADDF 341 (433)
Q Consensus 284 lDLFsG~GG~s~Gl~~ga~~a-G~~~~t~~avD~d~~A~~t~~~N~p~~--~v~~~di~d~ 341 (433)
||+=||.|-.+..| ... +.+ ++++|+++.+.+..+.+.... .+++.|++++
T Consensus 1 LdiG~G~G~~~~~l----~~~~~~~---v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAAL----AKRGGAS---VTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL 54 (95)
T ss_dssp EEET-TTSHHHHHH----HHTTTCE---EEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS
T ss_pred CEecCcCCHHHHHH----HhccCCE---EEEEeCCHHHHHHHHhcccccCchheeehHHhC
Confidence 67888888888777 334 666 489999999999999988654 3777887766
No 159
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=72.82 E-value=8.5 Score=38.43 Aligned_cols=79 Identities=27% Similarity=0.237 Sum_probs=53.5
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhhHHHh-cC------
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFLSL-LK------ 346 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d~~~l-l~------ 346 (433)
..-++||++||.||=++-|. +..+-.- .+.|+|+++..+..++.|.- ...+.+.|...+... ..
T Consensus 85 ~~~~VLD~CAapGgKt~~la---~~~~~~g-~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLA---ELMGNKG-EIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHH---HHTTTTS-EEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccCCCCceeeee---ecccchh-HHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 45579999999999998773 3333121 25799999999999988743 334555777766432 11
Q ss_pred cCCCCCchhhcccCC
Q 013949 347 EWAKLCQYFSIYDTD 361 (433)
Q Consensus 347 ~~~~PCQ~fS~ag~~ 361 (433)
..+.||.+.-...+.
T Consensus 161 lvDaPCSg~G~i~r~ 175 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRN 175 (283)
T ss_dssp EEECSCCCGGGTTTC
T ss_pred hcCCCccchhhhhhc
Confidence 134699998665543
No 160
>PRK03612 spermidine synthase; Provisional
Probab=71.99 E-value=8.9 Score=41.67 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=44.7
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC------------CCCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH------------PETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~------------p~~~v~~~di~d~~~ 343 (433)
.-++|++-+|.|++..-+. +..++. .+.+||+|+..++..+.|+ |..+++++|+.++..
T Consensus 298 ~~rVL~IG~G~G~~~~~ll---~~~~v~--~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~ 368 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVL---KYPDVE--QVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR 368 (521)
T ss_pred CCeEEEEcCCccHHHHHHH---hCCCcC--eEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH
Confidence 3489999999999887662 323323 3689999999999988842 556788999988764
No 161
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=71.51 E-value=7.1 Score=36.58 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=40.3
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d~~ 342 (433)
...++|||.||.|.+..-+ ...|.. +.++|+++.++...+.|.. ...+.+.|+.++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l----~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~ 106 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPL----ARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA 106 (224)
T ss_pred CCCeEEEECCCCCHHHHHH----HhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh
Confidence 4679999999999988766 445655 4699999988777666532 2345556665553
No 162
>PTZ00146 fibrillarin; Provisional
Probab=70.79 E-value=7.3 Score=39.36 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=38.1
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHH---cCCCCceeecChhh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF---NHPETKVRNEAADD 340 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~---N~p~~~v~~~di~d 340 (433)
+..+||||-||.|+++.-+. ...|-.- +++|||+++.+.+-+.. ..+++.++..|+..
T Consensus 132 pG~~VLDLGaG~G~~t~~lA---diVG~~G-~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~ 192 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVS---DLVGPEG-VVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARY 192 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHH---HHhCCCC-EEEEEECcHHHHHHHHHHhhhcCCCEEEECCccC
Confidence 34689999999999998773 4433221 36899999764422221 22566777788753
No 163
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=70.60 E-value=8.7 Score=37.18 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=41.6
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~ 341 (433)
..-++||+=||.|.++.-|.. ...|.+ +.++|+++.+++..+.+ +..+++.|++++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~--~~p~~~---v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~ 84 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLAR--RWPGAV---IEALDSSPEMVAAARER--GVDARTGDVRDW 84 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHH--HCCCCE---EEEEECCHHHHHHHHhc--CCcEEEcChhhC
Confidence 346899999999999887621 223555 47999999999887765 356788888754
No 164
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=70.34 E-value=7.6 Score=33.79 Aligned_cols=39 Identities=26% Similarity=0.513 Sum_probs=33.5
Q ss_pred CCCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHH
Q 013949 278 EPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKS 323 (433)
Q Consensus 278 ~~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t 323 (433)
....++||+=||.|.+...| ...|+++ .++|+++.++..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l----~~~~~~~---~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL----AKRGFEV---TGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH----HHTTSEE---EEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH----HHhCCEE---EEEECCHHHHhh
Confidence 35679999999999999888 6779874 799999999877
No 165
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=69.94 E-value=7.4 Score=36.31 Aligned_cols=41 Identities=37% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 327 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N 327 (433)
..++||+=||.|.++.-| ...|++ +.++|+++.+++..+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~l----a~~g~~---V~~iD~s~~~l~~a~~~ 71 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYL----SLAGYD---VRAWDHNPASIASVLDM 71 (195)
T ss_pred CCcEEEeCCCCCHHHHHH----HHCCCe---EEEEECCHHHHHHHHHH
Confidence 458999999999999877 456876 47999999999877554
No 166
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=68.30 E-value=7.9 Score=31.62 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=33.5
Q ss_pred EEeeCCEEEEEeCCCCccEEEEEEEEeecCCCceEEEEEEeee
Q 013949 134 LYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYR 176 (433)
Q Consensus 134 ~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v~VrWFyR 176 (433)
.|++||.|+.+- .+-|+|-|+|...-+.......+.|+||--
T Consensus 2 ~f~~GdlVwaK~-kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt 43 (83)
T cd05834 2 QFKAGDLVFAKV-KGYPAWPARVDEPEDWKPPGKKYPVYFFGT 43 (83)
T ss_pred CCCCCCEEEEec-CCCCCCCEEEecccccCCCCCEEEEEEeCC
Confidence 478999999998 667899999998765434457799999974
No 167
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=68.30 E-value=7.7 Score=36.78 Aligned_cols=56 Identities=29% Similarity=0.318 Sum_probs=38.3
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc----CCCCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN----HPETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N----~p~~~v~~~di~d~ 341 (433)
..-++|||=||-|.-++=| ...|+++ .|+|+++.|.+..+.. .-+......|++++
T Consensus 30 ~~g~~LDlgcG~GRNalyL----A~~G~~V---tAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYL----ASQGFDV---TAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF 89 (192)
T ss_dssp -SSEEEEES-TTSHHHHHH----HHTT-EE---EEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB
T ss_pred CCCcEEEcCCCCcHHHHHH----HHCCCeE---EEEECCHHHHHHHHHHHhhcCceeEEEEecchhc
Confidence 3559999999999999877 7789995 5999999998876532 11234555666543
No 168
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=67.94 E-value=7.3 Score=39.60 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=39.5
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHH------cCCCCceeecChhhHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF------NHPETKVRNEAADDFL 342 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~------N~p~~~v~~~di~d~~ 342 (433)
.-++||+=||.|..+..+ ...|... +.++|.++.....++. +.++..++..|++++.
T Consensus 123 g~~VLDIGCG~G~~~~~l----a~~g~~~--V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp 185 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRM----LGAGAKL--VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP 185 (322)
T ss_pred CCEEEEeccCCcHHHHHH----HHcCCCE--EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC
Confidence 358999999999999877 4456553 5799999865543221 1234667778887664
No 169
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=67.94 E-value=11 Score=37.97 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=44.5
Q ss_pred CCCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----C-CCceeecChhhHHH
Q 013949 278 EPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----P-ETKVRNEAADDFLS 343 (433)
Q Consensus 278 ~~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p-~~~v~~~di~d~~~ 343 (433)
++.+++||+=||-|||+.= +|+.-|+++ .++++++...+-.+... + +++++..|..+|..
T Consensus 71 ~~G~~lLDiGCGWG~l~~~---aA~~y~v~V---~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIY---AAEEYGVTV---VGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred CCCCEEEEeCCChhHHHHH---HHHHcCCEE---EEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 4678999999999999973 356668774 69999988777776632 2 35677777776653
No 170
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=67.48 E-value=7.1 Score=36.66 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=38.0
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecCh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAA 338 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di 338 (433)
...++||+-||.|.++.-|. ...+ + +.++|+++.+.+..+.|+. +..+.++|.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la---~~~~-~---v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~ 135 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLA---HLVR-R---VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG 135 (212)
T ss_pred CCCEEEEECCCccHHHHHHH---HHhC-E---EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc
Confidence 45799999999999887552 3333 3 5799999998887777653 345566655
No 171
>PRK04457 spermidine synthase; Provisional
Probab=67.25 E-value=14 Score=36.46 Aligned_cols=58 Identities=16% Similarity=0.310 Sum_probs=43.1
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhHHH
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFLS 343 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~~~ 343 (433)
-++|+|=+|.|.++.-+.. ...+.+ +.+||+|+...+..+.+|. ...++++|+.++..
T Consensus 68 ~~vL~IG~G~G~l~~~l~~--~~p~~~---v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~ 131 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYT--YLPDTR---QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA 131 (262)
T ss_pred CEEEEECCCHhHHHHHHHH--hCCCCe---EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH
Confidence 3799999998888876621 223444 4799999999999888753 34788899988764
No 172
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=66.83 E-value=7.4 Score=41.31 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=39.6
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc---CCCCceeecChhh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN---HPETKVRNEAADD 340 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N---~p~~~v~~~di~d 340 (433)
..++|||.||.|.++..| ...+.+ +.++|+++.+++.-+.. .++..+++.|+.+
T Consensus 38 ~~~vLDlGcG~G~~~~~l----a~~~~~---v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~ 94 (475)
T PLN02336 38 GKSVLELGAGIGRFTGEL----AKKAGQ---VIALDFIESVIKKNESINGHYKNVKFMCADVTS 94 (475)
T ss_pred CCEEEEeCCCcCHHHHHH----HhhCCE---EEEEeCCHHHHHHHHHHhccCCceEEEEecccc
Confidence 348999999999999988 333444 47999999988765433 2455677788754
No 173
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=65.80 E-value=12 Score=35.40 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=46.3
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhHHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDFLS 343 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~~~ 343 (433)
+.-.++|.=||+|+++.=+ ..+|-.. .++|+|-|+.|.++.+.|. ++..++.+|+-+.+.
T Consensus 34 ~g~~l~DIGaGtGsi~iE~----a~~~p~~-~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEW----ALAGPSG-RVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred CCCEEEEeCCCccHHHHHH----HHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 3448999999999888744 2456554 3789999999999999994 456788888877764
No 174
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=64.74 E-value=17 Score=35.72 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=40.0
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC---------CCceeecChhhHH
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---------ETKVRNEAADDFL 342 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p---------~~~v~~~di~d~~ 342 (433)
++|+|.+|.|++..-+. ...+.. .+.++|+|+...+..+.++| ..+++.+|...++
T Consensus 75 ~VL~iG~G~G~~~~~ll---~~~~~~--~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l 139 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVL---KHKSVE--KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL 139 (270)
T ss_pred EEEEEcCCchHHHHHHH---hCCCcc--eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH
Confidence 99999999999886551 222233 25799999998888887764 3456667776654
No 175
>PLN02672 methionine S-methyltransferase
Probab=64.64 E-value=7.2 Score=46.02 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=33.4
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
.++|||-||.|.+++.|.. ...... +.|+|+++.|++..+.|-
T Consensus 120 ~~VLDlG~GSG~Iai~La~--~~~~~~---v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAE--KWLPSK---VYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CEEEEEecchHHHHHHHHH--HCCCCE---EEEEECCHHHHHHHHHHH
Confidence 4899999999999998721 222234 579999999999997774
No 176
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=64.60 E-value=11 Score=36.62 Aligned_cols=59 Identities=22% Similarity=0.221 Sum_probs=39.1
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d~ 341 (433)
..-++||+-||.|.+..-+ +...|... .+.++|+++.+++..+.|. +.+.++.+|++++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~---a~~~g~~~-~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l 140 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLA---ARRVGPTG-KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL 140 (272)
T ss_pred CCCEEEEeCCCCCHHHHHH---HHHhCCCC-EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC
Confidence 3459999999987655433 23334332 2579999999988887763 3445666776653
No 177
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=63.57 E-value=16 Score=29.51 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=22.9
Q ss_pred EeeCCEEEEEeCC------CCccEEEEEEEEeec
Q 013949 135 YNLGDDAYVKAEE------GAVDYIARIVELFES 162 (433)
Q Consensus 135 Y~vGD~VyV~~~~------~~p~yIgrI~ei~e~ 162 (433)
.+.||+|.|+.++ ++.+|||+|+..-..
T Consensus 6 Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~gg 39 (75)
T PF11302_consen 6 VKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGG 39 (75)
T ss_pred cCCCCEEEEecCccccccCCCCcEEEEEEEEecc
Confidence 5789999999874 357999999987654
No 178
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=63.49 E-value=12 Score=37.21 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=46.0
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC---CCceeecChhhHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---ETKVRNEAADDFL 342 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p---~~~v~~~di~d~~ 342 (433)
.=++|++=.|.|++..-| ...|-.+ .|+|+|+.-+..++..+. +..++++|+-.+.
T Consensus 31 ~d~VlEIGpG~GaLT~~L----l~~~~~v---~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d 89 (259)
T COG0030 31 GDNVLEIGPGLGALTEPL----LERAARV---TAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD 89 (259)
T ss_pred CCeEEEECCCCCHHHHHH----HhhcCeE---EEEEeCHHHHHHHHHhcccccceEEEeCchhcCc
Confidence 458999999999999988 5556564 699999999999999863 4589999986554
No 179
>PRK05785 hypothetical protein; Provisional
Probab=63.33 E-value=11 Score=36.13 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=38.2
Q ss_pred CCcEEecccchhHHHHhHhhhhhcC-CCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLS-GVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 341 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~a-G~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~ 341 (433)
.-++|||-||.|-++.-| ... |.+ +.++|+++.+++.-+... ..+++|++++
T Consensus 52 ~~~VLDlGcGtG~~~~~l----~~~~~~~---v~gvD~S~~Ml~~a~~~~---~~~~~d~~~l 104 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHF----KKVFKYY---VVALDYAENMLKMNLVAD---DKVVGSFEAL 104 (226)
T ss_pred CCeEEEEcCCCCHHHHHH----HHhcCCE---EEEECCCHHHHHHHHhcc---ceEEechhhC
Confidence 458999999999888776 333 555 479999999998876653 2456666654
No 180
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=63.31 E-value=11 Score=37.70 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=41.8
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHH----HcCCCCc--eeecChhhHHHh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK----FNHPETK--VRNEAADDFLSL 344 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~----~N~p~~~--v~~~di~d~~~l 344 (433)
..++|||=||.|-++.-|..... .|.+ +.++|+++.+.+..+ ..+|+.. .+++|..+...+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~-~~~~---~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALR-QPAR---YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL 130 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhc-cCCe---EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh
Confidence 35899999999999988832111 1555 579999998754444 4467653 468888775433
No 181
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=63.28 E-value=17 Score=34.80 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=42.0
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~~ 342 (433)
...++|||=||.|.++..|..-+...+.+ +.++|+++.+++..+.+.. ...++++|+.++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~---v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~ 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVK---IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCe---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC
Confidence 34589999999999887762111113555 4799999998888776632 2467778887653
No 182
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=62.46 E-value=16 Score=37.30 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=38.0
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChhh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAADD 340 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~d 340 (433)
...++||+.||.|.++.-|. +..|-.. .+.++|+++.+.+..+.|. .++.++++|+.+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA---~~~~~~g-~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMS---RVVGEKG-LVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred CCCEEEEEeCCccHHHHHHH---HhcCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 34689999999999988763 3333211 1469999998766555432 234566777643
No 183
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=62.45 E-value=12 Score=28.15 Aligned_cols=38 Identities=13% Similarity=0.293 Sum_probs=24.3
Q ss_pred EeeCCEEEEEeCCCCccEEEEEEEEeecCCCceEEEEEEee
Q 013949 135 YNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFY 175 (433)
Q Consensus 135 Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v~VrWFy 175 (433)
|++||.|.++++.. ++-|..|..- ......++.++||-
T Consensus 1 f~~GDvV~LKSGGp-~MTV~~v~~~--~~~~~~~v~C~WFd 38 (53)
T PF09926_consen 1 FKIGDVVQLKSGGP-RMTVTEVGPN--AGASGGWVECQWFD 38 (53)
T ss_pred CCCCCEEEEccCCC-CeEEEEcccc--ccCCCCeEEEEeCC
Confidence 57899999998632 2334444322 12235799999995
No 184
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=61.84 E-value=9.3 Score=31.37 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=30.9
Q ss_pred EeeCCEEEEEeCCCCccEEEEEEEEeecC---CCceEEEEEEee
Q 013949 135 YNLGDDAYVKAEEGAVDYIARIVELFESV---DGEPYFKARWFY 175 (433)
Q Consensus 135 Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~---dg~~~v~VrWFy 175 (433)
|++||.|..+- .+-|+|-|+|++..... ....++.|+||-
T Consensus 1 f~vGDlVWaK~-kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFG 43 (87)
T cd05835 1 FNVGDLVWGKI-KGFPWWPGRVVSITVTSKRPPVVGMRWVTWFG 43 (87)
T ss_pred CCCCCEEEEec-CCCCCCCeEEechhhcccccCCCCeEEEEEeC
Confidence 57899999998 55689999999976432 124678999996
No 185
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=61.73 E-value=5 Score=46.07 Aligned_cols=122 Identities=17% Similarity=0.163 Sum_probs=84.9
Q ss_pred EECCEEEeeCCEEEEEeCCCCccEEEEEEEEeecCC-CceEEEEEEeeeccccc-cc-------c---------ccCCCC
Q 013949 129 SVDGCLYNLGDDAYVKAEEGAVDYIARIVELFESVD-GEPYFKARWFYRAEDTV-IK-------D---------LAYLVD 190 (433)
Q Consensus 129 ~vdG~~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~d-g~~~v~VrWFyRpeDtv-~~-------~---------~~~~~d 190 (433)
..++..|.++|.+++.....+|+.|+.|-.+-.+++ ...++..-.++|++|+. .+ + ......
T Consensus 140 s~~e~~y~~~~~l~~~v~~~~p~lia~~~~~~~~Kr~~~~~~k~s~~~r~~d~Pet~y~~~m~pe~Ar~e~~P~~~pq~~ 219 (1229)
T KOG2133|consen 140 SHDETLYDLRDSLFVEVSQPEPYLIAAICGFKYTKRDDRQVVKLSFYFRADDIPETGYLNLMKPERARLEINPHLCPQPL 219 (1229)
T ss_pred cccchhhhhhhhhhhhhccCCccccccccCccccccccccccccccccccccCcccccccccCchhhhhccCCccCCCcc
Confidence 457789999999999999778988998877766664 46677788888998885 11 0 011345
Q ss_pred CceeEeeCCc-ccccccceeeeeEEEeeCcccc-h-hhhccCCCCceEEEeeeccCCCceeEc
Q 013949 191 RKRVFLSDVE-DDNPLNCIVSKAKIAEVAANMD-L-EAKQKNIPPCDLYYDMKYTLPHLTFSN 250 (433)
Q Consensus 191 ~rELF~S~~~-d~~pl~~I~gKC~V~~~~~~~~-~-~~~~~~~~~~~ffy~~~Y~~~~~tF~~ 250 (433)
+++||.+... .+-|.+|..|||.+.+..+... - .......+...||+...|++.+.....
T Consensus 220 sq~l~~s~l~~i~qppscp~gk~~~~~skd~~h~~~~n~p~~ld~~i~fk~agglpps~k~a~ 282 (1229)
T KOG2133|consen 220 SQELFNSELQGITQPPSCPRGKGIAEYSKDVRHGGNTNAPFSLDNDIFFKCAGGLPPSTKPAS 282 (1229)
T ss_pred hhhhhcccccCCCCCCcCCCCCceEEeecccccCCccCCCCcccceeeeecccCCCCCCCCCC
Confidence 6889999887 6789999999999996554111 1 011223334567777778877665444
No 186
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=61.18 E-value=19 Score=37.08 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=42.0
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC--CCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP--ETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p--~~~v~~~di~d~ 341 (433)
...++|||=||.|.++..+.. ...+.+ +.++|+++.+.+..+.+.+ +..++.+|++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~--~~~~~~---VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l 172 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVK--HVDAKN---VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL 172 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHH--HCCCCE---EEEEECCHHHHHHHHHhhhccCCeEEeccHHhC
Confidence 457999999999998887732 222344 5799999998888777653 456777777654
No 187
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=60.21 E-value=7.4 Score=40.17 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=42.2
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCC-----ceeec-ChhhHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPET-----KVRNE-AADDFL 342 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~-----~v~~~-di~d~~ 342 (433)
.=.+||=|||.||+=.-. .+-|.++ .++|++...+.=-+.|+-.- .++.. |+..+.
T Consensus 198 G~~vlDPFcGTGgiLiEa----gl~G~~v---iG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 198 GELVLDPFCGTGGILIEA----GLMGARV---IGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred CCEeecCcCCccHHHHhh----hhcCceE---eecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 348999999999987643 5678885 69999999999999997532 24444 776655
No 188
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=60.15 E-value=14 Score=37.65 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=39.2
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHH------HcCCCCceeecChhhHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLK------FNHPETKVRNEAADDFL 342 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~------~N~p~~~v~~~di~d~~ 342 (433)
.-++||+=||.|.+...+ ...|... +.++|.++.....++ .+.+...+...+++++.
T Consensus 122 g~~VLDvGCG~G~~~~~~----~~~g~~~--v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp 184 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRM----LGHGAKS--LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH 184 (314)
T ss_pred CCEEEEeccCCcHHHHHH----HHcCCCE--EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC
Confidence 458999999999988877 4556653 579999986554332 23344566677776653
No 189
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=60.05 E-value=18 Score=37.73 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=40.6
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCC--CceeecChhh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE--TKVRNEAADD 340 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~--~~v~~~di~d 340 (433)
...++||+=||.|++..-+ +...|.+ +.++|+++.+.+.-+.+..+ ..+...|..+
T Consensus 167 ~g~rVLDIGcG~G~~a~~l---a~~~g~~---V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~ 224 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYA---AEHYGVS---VVGVTISAEQQKLAQERCAGLPVEIRLQDYRD 224 (383)
T ss_pred CCCEEEEeCCCccHHHHHH---HHHCCCE---EEEEeCCHHHHHHHHHHhccCeEEEEECchhh
Confidence 4468999999999998765 2344766 47999999999888877643 2444555543
No 190
>PRK13699 putative methylase; Provisional
Probab=59.99 E-value=12 Score=36.22 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=31.5
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
=.|||-|||.|..-. +|...|-+. +++|+++..++.-....
T Consensus 165 ~~vlDpf~Gsgtt~~----aa~~~~r~~---~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 165 AIVLDPFAGSGSTCV----AALQSGRRY---IGIELLEQYHRAGQQRL 205 (227)
T ss_pred CEEEeCCCCCCHHHH----HHHHcCCCE---EEEecCHHHHHHHHHHH
Confidence 379999999986544 347788885 79999998887765553
No 191
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=59.89 E-value=13 Score=36.20 Aligned_cols=49 Identities=29% Similarity=0.321 Sum_probs=34.6
Q ss_pred CCCCCCcEEecccchhHHHH--hHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC
Q 013949 276 IGEPEMSLLDLYSGCGAMST--GLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 329 (433)
Q Consensus 276 ~~~~~l~~lDLFsG~GG~s~--Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p 329 (433)
.+...+++-|=+||.|.|=+ ||+.+ =.+..+.|.|||+.|.+.-+.|..
T Consensus 48 ~~~~p~tLyDPCCG~gyLLTVlGLLh~-----~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 48 EGKGPYTLYDPCCGSGYLLTVLGLLHR-----RRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp SS-S-EEEEETT-TTSHHHHHHHHHTG-----GGEEEEEEEES-HHHHHHHHHHHH
T ss_pred cCCCCeeeeccCCCccHHHHHHHHhhh-----HHHHhHhcccCCHHHHHHHHHhhh
Confidence 34578999999999998854 55432 233347899999999999999963
No 192
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=59.49 E-value=8.7 Score=35.03 Aligned_cols=50 Identities=20% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCC-CeEeeEEEeecCHhhHHHHHHcCCCCceeecChh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFNHPETKVRNEAAD 339 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG-~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~ 339 (433)
...++|||-|+.||++.-+ ...+ -.. .++|+|+.+. ...+....+.+|+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~----~~~~~~~~-~v~avDl~~~------~~~~~~~~i~~d~~ 73 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVL----LQRGGPAG-RVVAVDLGPM------DPLQNVSFIQGDIT 73 (181)
T ss_dssp TTEEEEEET-TTSHHHHHH----HTSTTTEE-EEEEEESSST------GS-TTEEBTTGGGE
T ss_pred cccEEEEcCCcccceeeee----eecccccc-eEEEEecccc------ccccceeeeecccc
Confidence 4589999999999999876 3344 232 3689999987 22244445555653
No 193
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=59.11 E-value=13 Score=32.12 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=38.2
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----CCCceeecChh
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----PETKVRNEAAD 339 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p~~~v~~~di~ 339 (433)
+++|+-||.|-+++.| ...|-.. .++++|.++.+.+.++.|+ ++..+++..+.
T Consensus 1 ~vlDiGa~~G~~~~~~----~~~~~~~-~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYF----ARKGAEG-RVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHH----HHhCCCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 5899999999998877 4444332 3689999999999888874 33455555443
No 194
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=58.36 E-value=14 Score=28.32 Aligned_cols=38 Identities=34% Similarity=0.537 Sum_probs=26.6
Q ss_pred eeCCEEEEEeC-CCCccEEEEEEEEeecCCCceEEEEEEe
Q 013949 136 NLGDDAYVKAE-EGAVDYIARIVELFESVDGEPYFKARWF 174 (433)
Q Consensus 136 ~vGD~VyV~~~-~~~p~yIgrI~ei~e~~dg~~~v~VrWF 174 (433)
++||.+.|... -+.+...|.|+++-. .+|..=+.|||-
T Consensus 4 ~vGD~lvv~g~~vg~~~r~GeIveV~g-~dG~PPY~VRw~ 42 (58)
T PF08940_consen 4 SVGDRLVVHGRTVGQPDRHGEIVEVRG-PDGSPPYLVRWD 42 (58)
T ss_dssp -TTEEEEES-TTTS--EEEEEEEE-S--SSS-S-EEEEET
T ss_pred CCCCEEEEcCCcCCCCCcEeEEEEEEC-CCCCCCEEEEec
Confidence 58999999988 688999999999865 578888999996
No 195
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=57.40 E-value=16 Score=29.80 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=30.5
Q ss_pred EeeCCEEEEEeCCCCccEEEEEEEEeecCCCceEEEEEEeeec
Q 013949 135 YNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRA 177 (433)
Q Consensus 135 Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v~VrWFyRp 177 (433)
|.+||.|.-+- .+-|++.|+|.++-. +...+.|.||--.
T Consensus 1 f~~gdlVWaK~-~g~P~WPa~I~~~~~---~~~k~~V~FfG~~ 39 (80)
T cd06080 1 FEKNDLVWAKI-QGYPWWPAVIKSISR---KKQKARVNFIGDN 39 (80)
T ss_pred CCCCCEEEEeC-CCCCCCCEEEeeecC---CCCEEEEEEeCCC
Confidence 57899999887 455899999999854 3678899998544
No 196
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=56.92 E-value=4.6 Score=38.67 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=38.2
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 329 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p 329 (433)
...+||||-||+|-.+..- ..+|-.- +++.|+++++.+..+.|-.
T Consensus 79 rgkrVLd~gagsgLvaIAa----a~aGA~~--v~a~d~~P~~~~ai~lNa~ 123 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAA----ARAGAAE--VVAADIDPWLEQAIRLNAA 123 (218)
T ss_pred ccceeeecccccChHHHHH----HHhhhHH--HHhcCCChHHHHHhhcchh
Confidence 4569999999999888754 7789775 6899999999999999853
No 197
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=56.77 E-value=17 Score=38.50 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=40.1
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCC----CceeecChhh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPE----TKVRNEAADD 340 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~----~~v~~~di~d 340 (433)
...++||+=||.|+++..|. ...|.+ +.++|+++.+...-+.|... ..+++.|+.+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la---~~~~~~---v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~ 325 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA---ENFDVH---VVGIDLSVNMISFALERAIGRKCSVEFEVADCTK 325 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH---HhcCCE---EEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc
Confidence 34589999999999887762 333665 47999999998887776532 3455666543
No 198
>PRK10708 hypothetical protein; Provisional
Probab=56.38 E-value=30 Score=26.51 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=31.2
Q ss_pred eeCCEEEEEeCCCCccEEEEEEEEeecCCCceEE-------EEEEeeecccc
Q 013949 136 NLGDDAYVKAEEGAVDYIARIVELFESVDGEPYF-------KARWFYRAEDT 180 (433)
Q Consensus 136 ~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v-------~VrWFyRpeDt 180 (433)
+++|.|.|+.+ +.|-..|.|..+-.=..|.+|+ .+-||+--.+-
T Consensus 2 kvnD~VtVKTD-G~~rR~G~iLavE~F~EG~MyLvaL~dYP~GiWFFNE~~~ 52 (62)
T PRK10708 2 KVNDRVTVKTD-GGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGIWFFNEAGH 52 (62)
T ss_pred ccccEEEEecC-CCccccceEEEEeeccCcEEEEEEcCcCCCceEEEeccCC
Confidence 68999999985 4466788887765555676665 46788865543
No 199
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=56.29 E-value=41 Score=32.05 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=42.6
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLS 343 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~~ 343 (433)
+.-+||||=||-|-+=.=|- ..-++. ..++|+|+..+..-.++. ..|+++|+++-+.
T Consensus 13 pgsrVLDLGCGdG~LL~~L~---~~k~v~---g~GvEid~~~v~~cv~rG--v~Viq~Dld~gL~ 69 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLK---DEKQVD---GYGVEIDPDNVAACVARG--VSVIQGDLDEGLA 69 (193)
T ss_pred CCCEEEecCCCchHHHHHHH---HhcCCe---EEEEecCHHHHHHHHHcC--CCEEECCHHHhHh
Confidence 34699999999887665441 234655 589999999888877774 5689999987553
No 200
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=54.82 E-value=30 Score=36.41 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=43.8
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc-----CCCCceeecChhhHHHhc
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN-----HPETKVRNEAADDFLSLL 345 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N-----~p~~~v~~~di~d~~~ll 345 (433)
....+||+=||.|.+.+.+. ...-+.. ..|+|+++.++.....+ .++..+++.|+..++..+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA--~~~P~~~---~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~ 188 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQA--KNNPNKL---FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELL 188 (390)
T ss_pred CCCeEEEEcCcccHHHHHHH--HhCCCCC---EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhC
Confidence 34589999999999998772 2223444 57999998776555333 356678899998876443
No 201
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=54.61 E-value=1.8 Score=44.76 Aligned_cols=93 Identities=14% Similarity=0.120 Sum_probs=74.6
Q ss_pred eEEEECCEEEeeCCEEEEEeC-CCCccEEEEEEEEeecCCCceEEEEEEeeeccccccccccCCCCCceeEeeCCccccc
Q 013949 126 TQASVDGCLYNLGDDAYVKAE-EGAVDYIARIVELFESVDGEPYFKARWFYRAEDTVIKDLAYLVDRKRVFLSDVEDDNP 204 (433)
Q Consensus 126 ~~~~vdG~~Y~vGD~VyV~~~-~~~p~yIgrI~ei~e~~dg~~~v~VrWFyRpeDtv~~~~~~~~d~rELF~S~~~d~~p 204 (433)
..+.+.+...++|+.+.+.+. +...+.++++...|.+.++..+.-+.||||+..+.... ...+-.+++.+....+.+.
T Consensus 268 ~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 346 (371)
T COG5076 268 ESVLITNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRD-AKLFFDNCVMYNGEVTDYY 346 (371)
T ss_pred hhhcccccccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccc-cchhhhcccccchhhhhhh
Confidence 445677889999999999988 44566899999999888888888999999999664332 3456667888888889999
Q ss_pred ccceeeeeEEEeeCc
Q 013949 205 LNCIVSKAKIAEVAA 219 (433)
Q Consensus 205 l~~I~gKC~V~~~~~ 219 (433)
+....+.|.|.+...
T Consensus 347 ~~~~~~~~~~~~~~~ 361 (371)
T COG5076 347 KNANVLEDFVIKKTR 361 (371)
T ss_pred hhccchhhhHhhhhh
Confidence 999999998877653
No 202
>PRK11524 putative methyltransferase; Provisional
Probab=54.39 E-value=16 Score=36.31 Aligned_cols=42 Identities=26% Similarity=0.181 Sum_probs=33.5
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP 329 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p 329 (433)
=.|||-|+|.|-... +|...|=+. .++|+++.+++.-+....
T Consensus 210 D~VLDPF~GSGTT~~----AA~~lgR~~---IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 210 DIVLDPFAGSFTTGA----VAKASGRKF---IGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CEEEECCCCCcHHHH----HHHHcCCCE---EEEeCCHHHHHHHHHHHH
Confidence 379999999985443 457888775 699999999998887764
No 203
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=53.17 E-value=22 Score=37.13 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=42.7
Q ss_pred cccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHH
Q 013949 286 LYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFL 342 (433)
Q Consensus 286 LFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~ 342 (433)
+.+|+|-+...+..-+...|.++ ..+|.++..++.++..+++..++.+|+.+..
T Consensus 235 iIiG~G~~g~~l~~~L~~~~~~v---~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~ 288 (453)
T PRK09496 235 MIVGGGNIGYYLAKLLEKEGYSV---KLIERDPERAEELAEELPNTLVLHGDGTDQE 288 (453)
T ss_pred EEECCCHHHHHHHHHHHhCCCeE---EEEECCHHHHHHHHHHCCCCeEEECCCCCHH
Confidence 57888988887755455678885 6999999999999998877778888886543
No 204
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=52.78 E-value=30 Score=28.77 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=39.8
Q ss_pred cccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHHH
Q 013949 286 LYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFLS 343 (433)
Q Consensus 286 LFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~~ 343 (433)
+.+|+|-++..+...+...|+++ ..+|.|+..++.++... ..++.+|..+...
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~v---vvid~d~~~~~~~~~~~--~~~i~gd~~~~~~ 54 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDV---VVIDRDPERVEELREEG--VEVIYGDATDPEV 54 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEE---EEEESSHHHHHHHHHTT--SEEEES-TTSHHH
T ss_pred EEEcCCHHHHHHHHHHHhCCCEE---EEEECCcHHHHHHHhcc--cccccccchhhhH
Confidence 46899988888766666667674 69999999999999876 5688899976543
No 205
>PLN02476 O-methyltransferase
Probab=52.25 E-value=21 Score=35.77 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=45.1
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC------CCceeecChhhHHHh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP------ETKVRNEAADDFLSL 344 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p------~~~v~~~di~d~~~l 344 (433)
.-++|++.+|+|..++-+..++...| . +.++|+++.+.+.-+.|+- ...++.+|+.+++..
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G-~---V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESG-C---LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS 185 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCC-E---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence 44899999999999887733322233 3 4799999999888888873 346788898887643
No 206
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=51.85 E-value=15 Score=37.74 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF 326 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~ 326 (433)
...+||||.||=||==.=. ..+++.. .+++||+..+++--+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw----~~~~i~~--~vg~Dis~~si~ea~~ 103 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKW----QKAKIKH--YVGIDISEESIEEARE 103 (331)
T ss_dssp TT-EEEEET-TTTTTHHHH----HHTT-SE--EEEEES-HHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHH----HhcCCCE--EEEEeCCHHHHHHHHH
Confidence 6789999999988733323 4567775 7899999766554433
No 207
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=51.79 E-value=10 Score=27.46 Aligned_cols=20 Identities=10% Similarity=-0.245 Sum_probs=16.8
Q ss_pred CCceEEEEEEEee--eeeceec
Q 013949 413 PGVYFKECCLIIC--YLTFVPF 432 (433)
Q Consensus 413 ~gl~~~v~w~~~~--~~~~~p~ 432 (433)
..+.|.|.|+++. .++|+|.
T Consensus 18 ~~~~y~VkW~g~~~~~~tWe~~ 39 (55)
T cd00024 18 GEYEYLVKWKGYSYSEDTWEPE 39 (55)
T ss_pred CcEEEEEEECCCCCccCccccH
Confidence 5789999999986 5789885
No 208
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=50.32 E-value=22 Score=28.76 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=30.5
Q ss_pred EeeCCEEEEEeCCCCccEEEEEEEEeecC------CCceEEEEEEee
Q 013949 135 YNLGDDAYVKAEEGAVDYIARIVELFESV------DGEPYFKARWFY 175 (433)
Q Consensus 135 Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~------dg~~~v~VrWFy 175 (433)
|++||.|..+-. +-|+|-|+|+...... .....+.|++|-
T Consensus 1 f~~GdlVwaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg 46 (87)
T cd05162 1 FRPGDLVWAKMK-GYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG 46 (87)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEccccccchhhhccCCCCEEEEEEeC
Confidence 578999999985 5689999999876542 224577888885
No 209
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=48.95 E-value=17 Score=36.36 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=35.5
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 327 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N 327 (433)
+++||.=||.|-+|.-| ...|..+ .++|..+.++++++..
T Consensus 91 ~~ilDvGCGgGLLSepL----Arlga~V---~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPL----ARLGAQV---TGIDASDDMVEVANEH 130 (282)
T ss_pred ceEEEeccCccccchhh----HhhCCee---EeecccHHHHHHHHHh
Confidence 57999999999999988 7788774 6999999999999877
No 210
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=47.21 E-value=28 Score=32.59 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=36.4
Q ss_pred cEEecccchhHHHHhHhhhhhc-CCCeEeeEEEeecCHhhHHHHHHcCCC------CceeecCh
Q 013949 282 SLLDLYSGCGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFNHPE------TKVRNEAA 338 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~-aG~~~~t~~avD~d~~A~~t~~~N~p~------~~v~~~di 338 (433)
++||+=||.|++..-+. +. .+.+ +.++|+++......+.+++. ..+++.|+
T Consensus 2 ~vLDiGcG~G~~~~~la---~~~~~~~---v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~ 59 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA---ERHPHLQ---LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS 59 (224)
T ss_pred eEEEECCCCCHHHHHHH---HHCCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 68999999999887662 22 2455 46999999888877776532 24555665
No 211
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=46.39 E-value=34 Score=40.00 Aligned_cols=59 Identities=15% Similarity=0.331 Sum_probs=44.8
Q ss_pred ccceeEEEECCEEEeeCCEEEEEeC-CCC-------------------c---cEEEEEEEEeecC-CCceEEEEEEeeec
Q 013949 122 RCHYTQASVDGCLYNLGDDAYVKAE-EGA-------------------V---DYIARIVELFESV-DGEPYFKARWFYRA 177 (433)
Q Consensus 122 r~~Y~~~~vdG~~Y~vGD~VyV~~~-~~~-------------------p---~yIgrI~ei~e~~-dg~~~v~VrWFyRp 177 (433)
-..|+++.++++.|.+||.|+|-.+ ++. . .-=|+|-.|+... .......|..||-.
T Consensus 440 g~iye~~~in~~~ys~g~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~kg~is~fy~~~~~~~~~~e~c~y~d~ 519 (1164)
T PTZ00112 440 GVIYESIQINDVEYSIGDDVLIFCTGNGNTYNGKSGTKKNQNNKNIKENIYQLRKGKISSFYKNTNSNQVEAEVCIYYDQ 519 (1164)
T ss_pred ceEEEEEEEcceeeccCCcEEEEEcCCCCccccccCccccccccchhhhhheecccccchhhhcCCCceeeEEEEEEEcc
Confidence 3568999999999999999999876 221 1 1248888888754 34678899999987
Q ss_pred ccc
Q 013949 178 EDT 180 (433)
Q Consensus 178 eDt 180 (433)
.|.
T Consensus 520 ~d~ 522 (1164)
T PTZ00112 520 HDA 522 (1164)
T ss_pred ccH
Confidence 775
No 212
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=44.38 E-value=97 Score=27.70 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=35.1
Q ss_pred cceeEEEECCEEEeeCCEEEEEeC-----------CCCccEEEEEEEEeecCCC-------ceEEEEEEe
Q 013949 123 CHYTQASVDGCLYNLGDDAYVKAE-----------EGAVDYIARIVELFESVDG-------EPYFKARWF 174 (433)
Q Consensus 123 ~~Y~~~~vdG~~Y~vGD~VyV~~~-----------~~~p~yIgrI~ei~e~~dg-------~~~v~VrWF 174 (433)
.||+++-+.-+.+.+||.|-|++. .++-.-|-.|.+|...... ...|++.-|
T Consensus 1 i~y~GiflGAE~I~vGD~VRl~~~~~~~~~~~~~~~~~~tdvMvI~~I~~~~~~~~~~~~~~v~~~G~lY 70 (139)
T PF10383_consen 1 IYYRGIFLGAEMIWVGDAVRLKPLNASPSPNQSDGNPDVTDVMVIDEIQLRLINCDPDSPSTVRFRGDLY 70 (139)
T ss_pred CeECeEEEeeEEEEeCCEEEECccCCCcccccccCCCCceeEEEEeEEEEecccCCCCCCceEEEEeEec
Confidence 389999999999999999999653 1223456677777654322 355555544
No 213
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=44.18 E-value=51 Score=30.97 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=43.7
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhH-----HHHHHcCCCCceeecChhhHHHhcC
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHAC-----KSLKFNHPETKVRNEAADDFLSLLK 346 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~-----~t~~~N~p~~~v~~~di~d~~~ll~ 346 (433)
..+||+=||-|.+-+.+ +....+..+ .++|+....+ ...+.+.++..+++.|+..++..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~--A~~~Pd~n~---iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~ 84 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIEL--AKRNPDINF---IGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF 84 (195)
T ss_dssp EEEEEET-TTSHHHHHH--HHHSTTSEE---EEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred CeEEEecCCCCHHHHHH--HHHCCCCCE---EEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence 38999999999999987 335567775 6999997554 3445577888999999998775443
No 214
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=43.74 E-value=28 Score=27.63 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=29.3
Q ss_pred EeeCCEEEEEeCCCCccEEEEEEEEeec---CCCceEEEEEEee
Q 013949 135 YNLGDDAYVKAEEGAVDYIARIVELFES---VDGEPYFKARWFY 175 (433)
Q Consensus 135 Y~vGD~VyV~~~~~~p~yIgrI~ei~e~---~dg~~~v~VrWFy 175 (433)
|.+||.|.++- .+-|+|-|+|+..-+. ......+.|.||-
T Consensus 1 f~~GdlVWaK~-~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg 43 (86)
T PF00855_consen 1 FRPGDLVWAKL-KGYPWWPARVCDPDEKSKKKRKDGHVLVRFFG 43 (86)
T ss_dssp -STTEEEEEEE-TTSEEEEEEEEECCHCTSCSSSSTEEEEEETT
T ss_pred CCCCCEEEEEe-CCCCCCceEEeecccccccCCCCCEEEEEecC
Confidence 67899999998 5558999999987532 2335677777774
No 215
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=43.62 E-value=27 Score=26.65 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=29.2
Q ss_pred EeeCCEEEEEeCCCCccEEEEEEEEeecC-------CCceEEEEEEee
Q 013949 135 YNLGDDAYVKAEEGAVDYIARIVELFESV-------DGEPYFKARWFY 175 (433)
Q Consensus 135 Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~-------dg~~~v~VrWFy 175 (433)
|++||.|..+-. +-|++-|+|+.--... .....+.|++|-
T Consensus 1 f~~GdlVwaK~~-G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg 47 (63)
T smart00293 1 FKPGDLVWAKMK-GFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFG 47 (63)
T ss_pred CCCCCEEEEECC-CCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeC
Confidence 578999999975 5588999998865432 224577787773
No 216
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=43.33 E-value=52 Score=31.37 Aligned_cols=59 Identities=24% Similarity=0.180 Sum_probs=41.4
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHH----HHHcCCCCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKS----LKFNHPETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t----~~~N~p~~~v~~~di~d~ 341 (433)
...-++++=||.|-.++-|-. ...+.- ...+.|||+.|++. .+.|--+..++..|+.+-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~--~i~~~~--~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~ 105 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLAS--VIGPQA--LYLATDINPEALEATLETARCNRVHIDVVRTDLLSG 105 (209)
T ss_pred CceeEEEecCCcchHHHHHHH--hcCCCc--eEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh
Confidence 355789999999999998721 223333 36899999999875 556655556677766543
No 217
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=43.19 E-value=70 Score=24.54 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=30.8
Q ss_pred eeCCEEEEEeCCCCccEEEEEEEEeecCCCceEE-------EEEEeeecccc
Q 013949 136 NLGDDAYVKAEEGAVDYIARIVELFESVDGEPYF-------KARWFYRAEDT 180 (433)
Q Consensus 136 ~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v-------~VrWFyRpeDt 180 (433)
+++|.|.|+.+ +.|-.-|.|..+-+=..|.+|+ .+-||+--.+.
T Consensus 2 kvnD~VtVKTD-G~~rR~G~ilavE~F~EG~MYLvaL~dYP~GiWFFNE~~~ 52 (62)
T PF10781_consen 2 KVNDRVTVKTD-GGPRREGVILAVEPFNEGTMYLVALEDYPAGIWFFNEKDS 52 (62)
T ss_pred ccccEEEEecC-CcccccceEEEEeeccCcEEEEEEcCcCCcceEEEecCCC
Confidence 68999999985 4466778887765545666665 46788876554
No 218
>PLN02366 spermidine synthase
Probab=41.86 E-value=55 Score=33.22 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=42.8
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC---------CCceeecChhhHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---------ETKVRNEAADDFLS 343 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p---------~~~v~~~di~d~~~ 343 (433)
.-++|++=+|.|++..-+ ++..++. .+..||+|+...+..+.++| ..+++.+|...+..
T Consensus 92 pkrVLiIGgG~G~~~rel---lk~~~v~--~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREI---ARHSSVE--QIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCeEEEEcCCccHHHHHH---HhCCCCC--eEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh
Confidence 448999999999988766 2333443 25799999988888777664 45788889877754
No 219
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=40.98 E-value=34 Score=34.70 Aligned_cols=52 Identities=31% Similarity=0.295 Sum_probs=36.4
Q ss_pred CcEEecccchhHHHHhHhhhhhcCC-CeEeeEEEeecCHhhHHHHHHc----CCCC-ceeecCh
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSG-VKLVTRWAIDINPHACKSLKFN----HPET-KVRNEAA 338 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG-~~~~t~~avD~d~~A~~t~~~N----~p~~-~v~~~di 338 (433)
-++|||=||.|-++.-| ++..+ .. +..+|+|..|++.-+.| .++. .++..|+
T Consensus 160 ~~vlDlGCG~Gvlg~~l---a~~~p~~~---vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~ 217 (300)
T COG2813 160 GKVLDLGCGYGVLGLVL---AKKSPQAK---LTLVDVNARAVESARKNLAANGVENTEVWASNL 217 (300)
T ss_pred CcEEEeCCCccHHHHHH---HHhCCCCe---EEEEecCHHHHHHHHHhHHHcCCCccEEEEecc
Confidence 39999999999888766 34454 33 46999999888777665 4443 4555554
No 220
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=39.80 E-value=28 Score=28.99 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=29.3
Q ss_pred EeeCCEEEEEeCCCCccEEEEEEEE-------e--ecCCCceEEEEEEee
Q 013949 135 YNLGDDAYVKAEEGAVDYIARIVEL-------F--ESVDGEPYFKARWFY 175 (433)
Q Consensus 135 Y~vGD~VyV~~~~~~p~yIgrI~ei-------~--e~~dg~~~v~VrWFy 175 (433)
|++||.|..+-. +-|+|-|+|+.- . ..+.+...+.|++|-
T Consensus 1 f~~GDlVwaK~~-GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg 49 (93)
T cd05840 1 FQPGDRVLAKVK-GFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFP 49 (93)
T ss_pred CCCCCEEEEeCC-CCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeC
Confidence 578999999986 568999999862 1 112345778888883
No 221
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=37.13 E-value=54 Score=21.59 Aligned_cols=26 Identities=31% Similarity=0.240 Sum_probs=21.5
Q ss_pred eCCEEEEEeCCCCccEEEEEEEEeecC
Q 013949 137 LGDDAYVKAEEGAVDYIARIVELFESV 163 (433)
Q Consensus 137 vGD~VyV~~~~~~p~yIgrI~ei~e~~ 163 (433)
+||.|.|..++.+- .+|+|.++....
T Consensus 1 ~Gd~V~V~~G~~~G-~~G~I~~i~~~~ 26 (32)
T PF00467_consen 1 VGDTVKVISGPFKG-KIGKIVEIDRSK 26 (32)
T ss_dssp TTSEEEESSSTTTT-EEEEEEEEETTT
T ss_pred CCCEEEEeEcCCCC-ceEEEEEEECCC
Confidence 58999999997654 899999997653
No 222
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=36.84 E-value=42 Score=32.24 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=39.5
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC--C---CCceeecChhhH
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH--P---ETKVRNEAADDF 341 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~--p---~~~v~~~di~d~ 341 (433)
++.||=+|.|-+|.=. |+. .+ -+.|+|.||........|. | ++.++++|+.++
T Consensus 35 ~~~DLGaGsGiLs~~A---a~~--A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 35 TFADLGAGSGILSVVA---AHA--AE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred ceeeccCCcchHHHHH---Hhh--hc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 7889999999998732 233 22 2689999999999999993 3 457888887643
No 223
>PRK01581 speE spermidine synthase; Validated
Probab=36.67 E-value=81 Score=33.05 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc------------CCCCceeecChhhHHHh
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN------------HPETKVRNEAADDFLSL 344 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N------------~p~~~v~~~di~d~~~l 344 (433)
.-++|+|=+|.|+...-+ ++..++. .+.+||+|+..++.-+.+ .|.+.++.+|+.+++..
T Consensus 151 PkrVLIIGgGdG~tlrel---Lk~~~v~--~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 151 PKRVLILGGGDGLALREV---LKYETVL--HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CCEEEEECCCHHHHHHHH---HhcCCCC--eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh
Confidence 348999988888765544 2333333 257999999988877752 35567888999988643
No 224
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=34.45 E-value=23 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.029 Sum_probs=17.0
Q ss_pred CCCceEEEEEEEeee--eeceec
Q 013949 412 KPGVYFKECCLIICY--LTFVPF 432 (433)
Q Consensus 412 ~~gl~~~v~w~~~~~--~~~~p~ 432 (433)
...+.|.|.|++..+ .+|+|.
T Consensus 15 ~~~~~ylVkW~g~~~~~~tW~~~ 37 (55)
T smart00298 15 KGELEYLVKWKGYSYSEDTWEPE 37 (55)
T ss_pred CCcEEEEEEECCCCCccCceeeH
Confidence 456789999999866 789885
No 225
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=32.87 E-value=74 Score=30.90 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=31.4
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHH
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF 326 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~ 326 (433)
.-++|..=||-|-=..-| ...|+++ .++|+++.|++.+..
T Consensus 44 ~~rvLvPgCGkg~D~~~L----A~~G~~V---~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFF----LSKGVKV---IGIELSEKAVLSFFS 83 (226)
T ss_pred CCeEEEeCCCChHHHHHH----HhCCCcE---EEEecCHHHHHHHHH
Confidence 358998888887555444 6689985 699999999999865
No 226
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=32.82 E-value=89 Score=27.43 Aligned_cols=47 Identities=23% Similarity=0.238 Sum_probs=32.7
Q ss_pred CCCCcEEecccchhHHHHhHhhhhh--cCCCeEeeEEEeecCHhhHHHHHHc
Q 013949 278 EPEMSLLDLYSGCGAMSTGLCIGAS--LSGVKLVTRWAIDINPHACKSLKFN 327 (433)
Q Consensus 278 ~~~l~~lDLFsG~GG~s~Gl~~ga~--~aG~~~~t~~avD~d~~A~~t~~~N 327 (433)
....+++|+-||-|=++.-|..-+. ..+.. +.++|.++...+.....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~---v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLR---VLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe---EEEEECCcHHHHHHHHH
Confidence 3577999999999999988732111 24555 57999998766555443
No 227
>PLN03075 nicotianamine synthase; Provisional
Probab=32.74 E-value=89 Score=31.68 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=40.4
Q ss_pred CCCcEEecccchhHHHHhHhhhh-hcCCCeEeeEEEeecCHhhHHHHHHcCC-------CCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGA-SLSGVKLVTRWAIDINPHACKSLKFNHP-------ETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga-~~aG~~~~t~~avD~d~~A~~t~~~N~p-------~~~v~~~di~d~ 341 (433)
..=+++|+=||.||++.-+ ..+ ...+-. ..++|+|+.|.+.-+.+.. .+.++..|+.++
T Consensus 123 ~p~~VldIGcGpgpltaii-laa~~~p~~~---~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~ 189 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIV-LAKHHLPTTS---FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV 189 (296)
T ss_pred CCCEEEEECCCCcHHHHHH-HHHhcCCCCE---EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc
Confidence 3458999999988887643 321 112223 4699999999998888772 246777877664
No 228
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=32.47 E-value=84 Score=30.85 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=44.8
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDF 341 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~ 341 (433)
..-+++||=||.|-...=| .-..-+-. +.++|-++...+.-+...|++.+..+|+.++
T Consensus 30 ~~~~v~DLGCGpGnsTelL--~~RwP~A~---i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w 87 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELL--ARRWPDAV---ITGIDSSPAMLAKAAQRLPDATFEEADLRTW 87 (257)
T ss_pred ccceeeecCCCCCHHHHHH--HHhCCCCe---EeeccCCHHHHHHHHHhCCCCceecccHhhc
Confidence 4568999999998665544 11334444 4699999999999999999999999998654
No 229
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=31.88 E-value=68 Score=29.34 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=28.1
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 327 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N 327 (433)
...++|+|=||+|-.++.++ ...|..- +.+-|.++ +....+.|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a---~~~~~~~--Vv~TD~~~-~l~~l~~N 87 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAA---KLFGAAR--VVLTDYNE-VLELLRRN 87 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHH---HT-T-SE--EEEEE-S--HHHHHHHH
T ss_pred CCceEEEECCccchhHHHHH---hccCCce--EEEeccch-hhHHHHHH
Confidence 45699999999997776652 3324332 57899999 88888887
No 230
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=31.54 E-value=54 Score=32.62 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=34.5
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC-----C-CCceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH-----P-ETKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~-----p-~~~v~~~di~d~~ 342 (433)
+..+|||+=||-||++.=+ ++.-|+++ .++.+++.-.+-.+... + .+.+.+.|..++.
T Consensus 62 ~G~~vLDiGcGwG~~~~~~---a~~~g~~v---~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYA---AERYGCHV---TGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp TT-EEEEES-TTSHHHHHH---HHHH--EE---EEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred CCCEEEEeCCCccHHHHHH---HHHcCcEE---EEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 5679999999999999865 34448774 59999876666553332 2 2467777777665
No 231
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=31.33 E-value=65 Score=30.97 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=42.5
Q ss_pred ccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHH
Q 013949 287 YSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFL 342 (433)
Q Consensus 287 FsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~ 342 (433)
..|+|=+...++.-+...|.++ ..+|.|+..++.+...-..+.++++|..+-.
T Consensus 5 IiG~G~vG~~va~~L~~~g~~V---v~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~ 57 (225)
T COG0569 5 IIGAGRVGRSVARELSEEGHNV---VLIDRDEERVEEFLADELDTHVVIGDATDED 57 (225)
T ss_pred EECCcHHHHHHHHHHHhCCCce---EEEEcCHHHHHHHhhhhcceEEEEecCCCHH
Confidence 4688888887877777889885 6999999999998886556778888886544
No 232
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=30.90 E-value=89 Score=31.82 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=42.7
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC----CCceeecChhhHHHhc
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP----ETKVRNEAADDFLSLL 345 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p----~~~v~~~di~d~~~ll 345 (433)
-.+||.=.|.||=|..+.. ..+ .. .++|+|.|+.|.+.-+.+.. ...+++.+-.++...+
T Consensus 22 giyVD~TlG~GGHS~~iL~---~l~-~g-~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILE---QLG-TG-RLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHL 85 (305)
T ss_pred CEEEEeCCCChHHHHHHHH---hCC-CC-EEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHH
Confidence 3799999999999999843 222 11 36899999999988765432 3467777776665443
No 233
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=29.96 E-value=70 Score=30.65 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=36.4
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC---CCCceeecChhhH
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH---PETKVRNEAADDF 341 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~---p~~~v~~~di~d~ 341 (433)
-++|++=||+|-++.-| |.-- ..+.++|+++.|++.-+... |++.++..|+.++
T Consensus 45 ~~alEvGCs~G~lT~~L------A~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~ 101 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERL------APRC-DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF 101 (201)
T ss_dssp EEEEEE--TTSHHHHHH------GGGE-EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-
T ss_pred ceeEecCCCccHHHHHH------HHhh-CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC
Confidence 37999999999999877 2222 23689999999999998764 5566677776443
No 234
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=29.67 E-value=50 Score=35.20 Aligned_cols=78 Identities=24% Similarity=0.265 Sum_probs=52.7
Q ss_pred CCCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC-----CCceeecChhhHHHhc-C-----
Q 013949 278 EPEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP-----ETKVRNEAADDFLSLL-K----- 346 (433)
Q Consensus 278 ~~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p-----~~~v~~~di~d~~~ll-~----- 346 (433)
....++||++|-.||=.+-+ ++-+-+--+ ++|.|.+..-+..+..|.+ ++.+.+.|...|.... .
T Consensus 240 q~gERIlDmcAAPGGKTt~I--AalMkn~G~--I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHI--AALMKNTGV--IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCeecchhcCCCchHHHH--HHHHcCCce--EEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccce
Confidence 35679999999999988755 322222223 5799999999999999965 4567788887664211 1
Q ss_pred -cCCCCCchhhccc
Q 013949 347 -EWAKLCQYFSIYD 359 (433)
Q Consensus 347 -~~~~PCQ~fS~ag 359 (433)
...-||.+--+..
T Consensus 316 VLLDAPCSGtgvi~ 329 (460)
T KOG1122|consen 316 VLLDAPCSGTGVIS 329 (460)
T ss_pred eeecCCCCCCcccc
Confidence 1234998854433
No 235
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=29.00 E-value=21 Score=26.09 Aligned_cols=19 Identities=16% Similarity=-0.129 Sum_probs=15.2
Q ss_pred CceEEEEEEEeee--eeceec
Q 013949 414 GVYFKECCLIICY--LTFVPF 432 (433)
Q Consensus 414 gl~~~v~w~~~~~--~~~~p~ 432 (433)
..-|.|.|+++.+ .+|+|.
T Consensus 18 ~~~ylVkW~g~~~~~~tWe~~ 38 (55)
T PF00385_consen 18 VYEYLVKWKGYPYSENTWEPE 38 (55)
T ss_dssp EEEEEEEETTSSGGGEEEEEG
T ss_pred cEEEEEEECCCCCCCCeEeeH
Confidence 4589999999844 689885
No 236
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=28.47 E-value=81 Score=29.03 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=10.9
Q ss_pred CCCCCeeecCCCCh
Q 013949 66 PDSDLFFVGPPVSV 79 (433)
Q Consensus 66 ~~~~~~f~g~p~~~ 79 (433)
.-.|++|+|.||.-
T Consensus 105 nPkD~RfIGTPvD~ 118 (175)
T COG4741 105 NPKDARFIGTPVDF 118 (175)
T ss_pred CCccceeeCCCceE
Confidence 44589999999863
No 237
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=27.54 E-value=62 Score=36.58 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=24.4
Q ss_pred EEEeecCHhhHHHHHHcCCC------CceeecChhhHH
Q 013949 311 RWAIDINPHACKSLKFNHPE------TKVRNEAADDFL 342 (433)
Q Consensus 311 ~~avD~d~~A~~t~~~N~p~------~~v~~~di~d~~ 342 (433)
+.++|+|+.|+..-+.|--. +.+.+.|+.++.
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~ 296 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLK 296 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcc
Confidence 68999999999999999431 356677777654
No 238
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=27.40 E-value=60 Score=29.82 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.5
Q ss_pred CCCCCCeeecCCCC
Q 013949 65 KPDSDLFFVGPPVS 78 (433)
Q Consensus 65 ~~~~~~~f~g~p~~ 78 (433)
-.-+|++|||.||.
T Consensus 91 ynP~D~RFlG~PVD 104 (156)
T PF10107_consen 91 YNPKDARFLGSPVD 104 (156)
T ss_pred CChhhheecCCCce
Confidence 44568999999996
No 239
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=27.19 E-value=1.1e+02 Score=18.75 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=19.6
Q ss_pred EeeCCEEEEEeCCCCccEEEEEEEEe
Q 013949 135 YNLGDDAYVKAEEGAVDYIARIVELF 160 (433)
Q Consensus 135 Y~vGD~VyV~~~~~~p~yIgrI~ei~ 160 (433)
+.+||.|.|..++..- .+|.|.++.
T Consensus 2 ~~~G~~V~I~~G~~~g-~~g~i~~i~ 26 (28)
T smart00739 2 FEVGDTVRVIAGPFKG-KVGKVLEVD 26 (28)
T ss_pred CCCCCEEEEeECCCCC-cEEEEEEEc
Confidence 5689999999986543 688888874
No 240
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=26.53 E-value=76 Score=25.97 Aligned_cols=40 Identities=25% Similarity=0.332 Sum_probs=28.4
Q ss_pred EeeCCEEEEEeCCCCccEEEEEEEEeecC----CCceEEEEEEee
Q 013949 135 YNLGDDAYVKAEEGAVDYIARIVELFESV----DGEPYFKARWFY 175 (433)
Q Consensus 135 Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~----dg~~~v~VrWFy 175 (433)
|++||.|.-+-. +-|+|-|+|.+-..+. .....+.|+||-
T Consensus 1 f~~GDlVwaK~~-g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG 44 (86)
T cd05836 1 LKLGDLVWAKMK-GFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFG 44 (86)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEechhhhcccccCCCCeEEEEEeC
Confidence 578999999985 6799999998753221 113557777775
No 241
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=26.40 E-value=68 Score=27.44 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=30.8
Q ss_pred EEeeCCEEEEEeCCCCccEEEEEEEEee---------cCCCceEEEEEEeeec
Q 013949 134 LYNLGDDAYVKAEEGAVDYIARIVELFE---------SVDGEPYFKARWFYRA 177 (433)
Q Consensus 134 ~Y~vGD~VyV~~~~~~p~yIgrI~ei~e---------~~dg~~~v~VrWFyRp 177 (433)
.|.+||-|..+-. +-|+|-|.|..--. .......+.|++|.-.
T Consensus 2 ~~~~GdlVWaK~~-g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~ 53 (110)
T cd05837 2 KYQVGDLVWAKVS-GYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDN 53 (110)
T ss_pred CCCCCCEEEEeCC-CCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCC
Confidence 5889999999875 56999999985211 1223567889988643
No 242
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=26.10 E-value=1.1e+02 Score=24.36 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=33.2
Q ss_pred ccchhHHHHhHhhhhhcCC---CeEeeEEEeecCHhhHHHHHHcCC
Q 013949 287 YSGCGAMSTGLCIGASLSG---VKLVTRWAIDINPHACKSLKFNHP 329 (433)
Q Consensus 287 FsG~GG~s~Gl~~ga~~aG---~~~~t~~avD~d~~A~~t~~~N~p 329 (433)
|-|+|-|..+|-.|+..+| .++ ..+++.++...+-+...++
T Consensus 4 iIG~G~mg~al~~~l~~~g~~~~~v--~~~~~r~~~~~~~~~~~~~ 47 (96)
T PF03807_consen 4 IIGAGNMGSALARGLLASGIKPHEV--IIVSSRSPEKAAELAKEYG 47 (96)
T ss_dssp EESTSHHHHHHHHHHHHTTS-GGEE--EEEEESSHHHHHHHHHHCT
T ss_pred EECCCHHHHHHHHHHHHCCCCceeE--EeeccCcHHHHHHHHHhhc
Confidence 4499999999877888899 664 2356999999999988887
No 243
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=25.97 E-value=2.2e+02 Score=21.07 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=21.0
Q ss_pred EeeCCEEEEEeCCCCccEEEEEEEEeecC
Q 013949 135 YNLGDDAYVKAEEGAVDYIARIVELFESV 163 (433)
Q Consensus 135 Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~ 163 (433)
+.+|+-|++.-..+ .+|-|+|+.+-...
T Consensus 1 ~~vG~~v~~~~~~~-~~y~A~I~~~r~~~ 28 (55)
T PF11717_consen 1 FEVGEKVLCKYKDG-QWYEAKILDIREKN 28 (55)
T ss_dssp --TTEEEEEEETTT-EEEEEEEEEEEECT
T ss_pred CCcCCEEEEEECCC-cEEEEEEEEEEecC
Confidence 46899999998444 56999999998843
No 244
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=25.66 E-value=1e+02 Score=32.18 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=35.2
Q ss_pred CCCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecCh
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAA 338 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di 338 (433)
...++|||=|+.||.+.=| ...|.. ++|||..+-+-.. .+.|.+.++.+|.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L----~~rG~~---V~AVD~g~l~~~L--~~~~~V~h~~~d~ 261 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQL----VRRGMF---VTAVDNGPMAQSL--MDTGQVEHLRADG 261 (357)
T ss_pred CCCEEEEeCCCCcHHHHHH----HHcCCE---EEEEechhcCHhh--hCCCCEEEEeccC
Confidence 5679999999999999877 566876 4799977654332 3445444444443
No 245
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=25.11 E-value=57 Score=32.34 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=34.9
Q ss_pred CCcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcC
Q 013949 280 EMSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNH 328 (433)
Q Consensus 280 ~l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~ 328 (433)
..++|++=||+|-+..=+=......++. ++|+|+.+.|++.++.|-
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~---v~acDfsp~Ai~~vk~~~ 117 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLK---VYACDFSPRAIELVKKSS 117 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeE---EEEcCCChHHHHHHHhcc
Confidence 3389999999998887762222223444 699999999999999985
No 246
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=24.70 E-value=61 Score=31.92 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=28.7
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHc
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFN 327 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N 327 (433)
+.+|.|+|+|++.+.+ ... . .+.+|+|+.=+..|+.-
T Consensus 28 ~yvEPF~Gggsv~l~~----~~~--~---~~lND~n~~Li~~~~~i 64 (266)
T TIGR00571 28 CLVEPFVGGGAVFFNL----NPK--R---YLLNDINEDLINLYKAI 64 (266)
T ss_pred EEEEecCCcchhheee----cCc--E---EEEecCCHHHHHHHHHH
Confidence 7999999999988755 221 2 47899999988888654
No 247
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=23.64 E-value=1.2e+02 Score=30.53 Aligned_cols=64 Identities=23% Similarity=0.268 Sum_probs=43.2
Q ss_pred CCCcEEecccchhHHHHhHhhhhhc-CCCeEeeEEEeecCHhhHHHHHHcC---C---C--CceeecChhhHH
Q 013949 279 PEMSLLDLYSGCGAMSTGLCIGASL-SGVKLVTRWAIDINPHACKSLKFNH---P---E--TKVRNEAADDFL 342 (433)
Q Consensus 279 ~~l~~lDLFsG~GG~s~Gl~~ga~~-aG~~~~t~~avD~d~~A~~t~~~N~---p---~--~~v~~~di~d~~ 342 (433)
..+++||+-+|.|-...++-.-+.. -|-.-..+..+|||++..+.-+..- | . ..++++|++++.
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 4489999999999999887332111 1222234679999999887766554 2 2 357778888764
No 248
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.92 E-value=1.2e+02 Score=26.46 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=37.3
Q ss_pred ccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCCCCceeecChhhHH
Q 013949 287 YSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHPETKVRNEAADDFL 342 (433)
Q Consensus 287 FsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p~~~v~~~di~d~~ 342 (433)
.-|+||++.+.+.++...|+.- +..+.-+..-.+.+...++...+...+.+++.
T Consensus 17 viGaGg~ar~v~~~L~~~g~~~--i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~ 70 (135)
T PF01488_consen 17 VIGAGGAARAVAAALAALGAKE--ITIVNRTPERAEALAEEFGGVNIEAIPLEDLE 70 (135)
T ss_dssp EESSSHHHHHHHHHHHHTTSSE--EEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC
T ss_pred EECCHHHHHHHHHHHHHcCCCE--EEEEECCHHHHHHHHHHcCccccceeeHHHHH
Confidence 4599999999888777889883 35677887767777766655444444455443
No 249
>COG5475 Uncharacterized small protein [Function unknown]
Probab=22.90 E-value=2.1e+02 Score=21.92 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=25.2
Q ss_pred EEEeeCCEEEEEeCCCCccEEEEEEEEeecCCCceEEEEEEeeecc
Q 013949 133 CLYNLGDDAYVKAEEGAVDYIARIVELFESVDGEPYFKARWFYRAE 178 (433)
Q Consensus 133 ~~Y~vGD~VyV~~~~~~p~yIgrI~ei~e~~dg~~~v~VrWFyRpe 178 (433)
..|.+||.|-|+.+ -|-. |+.=.. ..-|+.++||-+..
T Consensus 3 ~~FstgdvV~lKsG--GP~M---tvs~~s---s~Gmy~C~Wf~g~g 40 (60)
T COG5475 3 MSFSTGDVVTLKSG--GPRM---TVSGYS---SDGMYECRWFDGYG 40 (60)
T ss_pred ceeecCcEEEeecC--CceE---EEeccc---cCCeEEEEEecCCC
Confidence 46899999999965 3411 222121 23689999998765
No 250
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=22.77 E-value=1.7e+02 Score=25.59 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=27.5
Q ss_pred EEEeeCCEEEEEeCCC-CccEEEEEEEEeecC-CCceEEEEEEe
Q 013949 133 CLYNLGDDAYVKAEEG-AVDYIARIVELFESV-DGEPYFKARWF 174 (433)
Q Consensus 133 ~~Y~vGD~VyV~~~~~-~p~yIgrI~ei~e~~-dg~~~v~VrWF 174 (433)
..+.+||+|+...++. ..|.-|.|+...+.. .....++|.-|
T Consensus 54 ~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ 97 (124)
T PF15057_consen 54 HSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFY 97 (124)
T ss_pred CcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEE
Confidence 4788999999997744 344559999866543 22345555544
No 251
>PLN02823 spermine synthase
Probab=22.65 E-value=1.9e+02 Score=29.74 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=38.7
Q ss_pred cEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHHcCC---------CCceeecChhhHHH
Q 013949 282 SLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKFNHP---------ETKVRNEAADDFLS 343 (433)
Q Consensus 282 ~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~N~p---------~~~v~~~di~d~~~ 343 (433)
++|-|=.|.|++..-+ ++..+.. .+.+||+|+...+..+.++| ..+++.+|...++.
T Consensus 106 ~VLiiGgG~G~~~re~---l~~~~~~--~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~ 171 (336)
T PLN02823 106 TVFIMGGGEGSTAREV---LRHKTVE--KVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE 171 (336)
T ss_pred EEEEECCCchHHHHHH---HhCCCCC--eEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh
Confidence 6766666666555432 1333444 25799999999998888774 45688899888764
No 252
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=22.49 E-value=99 Score=32.06 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=40.6
Q ss_pred CcEEecccchhHHHHhHhhhhhcCCCeEeeEEEeecCH---hhHHHHHHcCCC--CceeecChhhH
Q 013949 281 MSLLDLYSGCGAMSTGLCIGASLSGVKLVTRWAIDINP---HACKSLKFNHPE--TKVRNEAADDF 341 (433)
Q Consensus 281 l~~lDLFsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~---~A~~t~~~N~p~--~~v~~~di~d~ 341 (433)
-++||.=||.|-+|+ || ..||..- ++|||... .|.+..+.|.-. .+++.+.|+++
T Consensus 62 K~VlDVGcGtGILS~-F~---akAGA~~--V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSM-FA---AKAGARK--VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred CEEEEcCCCccHHHH-HH---HHhCcce--EEEEechHHHHHHHHHHHhcCccceEEEeecceEEE
Confidence 389999999999998 53 7788664 78888775 566667777542 36777777765
No 253
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=20.42 E-value=1.2e+02 Score=22.70 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=15.7
Q ss_pred EEeeCCEEEEEeCCCCccEEEEEEEEee
Q 013949 134 LYNLGDDAYVKAEEGAVDYIARIVELFE 161 (433)
Q Consensus 134 ~Y~vGD~VyV~~~~~~p~yIgrI~ei~e 161 (433)
...+||.|.+...++.. +.|..+.+
T Consensus 37 ~~~VGD~V~~~~~~~~~---~~I~~vl~ 61 (68)
T cd04466 37 PPAVGDRVEFEPEDDGE---GVIEEILP 61 (68)
T ss_pred CCCCCcEEEEEECCCCc---EEEEEEec
Confidence 35799999998654333 34555544
No 254
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.26 E-value=1.7e+02 Score=29.09 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=28.1
Q ss_pred ccchhHHHHhHhhhhhcCCCeEeeEEEeecCHhhHHHHHH
Q 013949 287 YSGCGAMSTGLCIGASLSGVKLVTRWAIDINPHACKSLKF 326 (433)
Q Consensus 287 FsG~GG~s~Gl~~ga~~aG~~~~t~~avD~d~~A~~t~~~ 326 (433)
|-|+|.|..++..++..+|+++ +.+|.++...+..+.
T Consensus 9 vIGaG~mG~~iA~~l~~~g~~V---~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 9 IIGAGTMGSGIAALFARKGLQV---VLIDVMEGALERARG 45 (311)
T ss_pred EECCCHHHHHHHHHHHhCCCeE---EEEECCHHHHHHHHH
Confidence 4499988888877777889884 578888877666554
Done!