BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013951
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 191/438 (43%), Gaps = 57/438 (13%)
Query: 9 HFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARF-KTVIARAIKSGLQIRLI 67
H +++PY GH+ P+F +A+LL G +T V T N R K+ +A
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDG-----FT 64
Query: 68 EIQFPWQEAGIPEGCENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKP--------- 118
+ F IP+G L P + + L Q F LKP
Sbjct: 65 DFNF----ESIPDG-----LTPMEGDGDVSQDVPTLCQSVRKNF----LKPYCELLTRLN 111
Query: 119 --------CCIISDMCFPWTVDTAAKFNVPRII-FHGFSCFCLFCHHLLGVSKVHENVTS 169
C++SD C +T+ A +F +P ++ F +C L H +
Sbjct: 112 HSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFK 171
Query: 170 DSEYFN----------IPGLPDHIEFTKVQLLISKRDDDRKELREQILAADK--KTYGAI 217
D Y IPGL + + I + + L I AD+ K +
Sbjct: 172 DESYLTNGCLETKVDWIPGL-KNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTIL 230
Query: 218 INTFEELESPFIENYKKAKQGKVWCIGP-ASLCNKEPIDKAERGKTASI--DVPECLTWL 274
+NTF ELES I N + ++ IGP SL + P +++ + ECL WL
Sbjct: 231 LNTFNELESDVI-NALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWL 289
Query: 275 DSQQPSSVVYVCLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENF 334
+S++P SVVYV GS + QL+E GL K F+W+IR L + F
Sbjct: 290 ESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR--PDLVIGGSVIFSSEF 347
Query: 335 EERIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCN 394
I RGL I W PQ +L+HP++GGFLTHCGWNS+ E I AGV ML WP FADQ +
Sbjct: 348 TNEIADRGL-IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTD 406
Query: 395 EKLIVNVLRIGVSVGVEV 412
+ I N IG+ + V
Sbjct: 407 CRFICNEWEIGMEIDTNV 424
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/427 (30%), Positives = 196/427 (45%), Gaps = 49/427 (11%)
Query: 4 EASQVHFLLLPYLAPGHLIPMFDIA-RLLAQHGAIVTIVTTPVNAARFKTVIARAIKSGL 62
E+ H ++P GHLIP+ + A RL+ HG VT V + + R + L
Sbjct: 3 ESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFV---IAGEGPPSKAQRTVLDSL 59
Query: 63 QIRLIEIQFPWQEAGIPEGCENCDLLPTTDFARFM-----KSLHMLQQPFENLFKEKTLK 117
+ + P + DL +T + +S L++ F++ F E
Sbjct: 60 PSSISSVFLP--------PVDLTDLSSSTRIESRISLTVTRSNPELRKVFDS-FVEGGRL 110
Query: 118 PCCIISDMCFPWTVDTAAKFNVPRIIFHGFSCFCL-FCHHLLGVSKVHENVTSDSEYFNI 176
P ++ D+ D A +F+VP IF+ + L F HL K+ E V+ +
Sbjct: 111 PTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHL---PKLDETVSCEFRELTE 167
Query: 177 P-GLPDHIEFTKVQLLISKRDDDRKELREQILAADKKTY----GAIINTFEELESPFIEN 231
P LP + L +D RK+ + L + K Y G ++NTF ELE I+
Sbjct: 168 PLMLPGCVPVAGKDFLDPAQD--RKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKA 225
Query: 232 YKKAKQGK--VWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGS 289
++ K V+ +GP K+ + E ECL WLD+Q SV+YV GS
Sbjct: 226 LQEPGLDKPPVYPVGPLVNIGKQEAKQTEES--------ECLKWLDNQPLGSVLYVSFGS 277
Query: 290 ICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKW----------LVQENFEERIK 339
L QL EL LGL S + F+WVIR S + + + F ER K
Sbjct: 278 GGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK 337
Query: 340 GRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIV 399
RG +I WAPQ +L+HP+ GGFLTHCGWNS+LE + +G+ ++ WPL+A+Q N L+
Sbjct: 338 KRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLS 397
Query: 400 NVLRIGV 406
+R +
Sbjct: 398 EDIRAAL 404
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 160/343 (46%), Gaps = 33/343 (9%)
Query: 77 GIPEGCENCDLLPTTDFARFMKSL-HMLQQPFENLFKEKTLKPCCIISDMCFPWTVDTAA 135
G+PEG P D F ++ +Q E C+++D + D AA
Sbjct: 72 GVPEGYVFAGR-PQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAA 130
Query: 136 KFNVPRIIFHGFSCFCLFCH-------HLLGVSKVHENVTSDSEYFN-IPGLPDHIEFTK 187
+ V + F L H +GVS + + E N IPG+ + F
Sbjct: 131 EMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGR---EDELLNFIPGM-SKVRFRD 186
Query: 188 VQ--LLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWCIGP 245
+Q ++ + + ++ K IN+FEEL+ + N K+K IGP
Sbjct: 187 LQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDS-LTNDLKSKLKTYLNIGP 245
Query: 246 ASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGL 305
+L P+ G CL WL ++P+SVVY+ G++ P ++++ L L
Sbjct: 246 FNLITPPPVVPNTTG---------CLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEAL 296
Query: 306 EASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLT 365
EAS PF+W +R +++ + E F E+ +G G+++ WAPQ +L+H AVG F+T
Sbjct: 297 EASRVPFIWSLRDKARVH------LPEGFLEKTRGYGMVVP-WAPQAEVLAHEAVGAFVT 349
Query: 366 HCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSV 408
HCGWNS E ++ GV ++ P F DQ N +++ +VL IGV +
Sbjct: 350 HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI 392
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/438 (28%), Positives = 203/438 (46%), Gaps = 63/438 (14%)
Query: 1 MASEASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT-------TPVNAARFKTV 53
M+ + +P GHL + A+LL H + I P + K+V
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 54 IARAIKSGLQIRLI---EIQFPWQEAGIPEGCENCDLLPTTDFA--RFMKSL-HMLQQPF 107
+A S QI+LI E++ P QE LL + +F F++SL ++
Sbjct: 63 LA----SQPQIQLIDLPEVEPPPQE-----------LLKSPEFYILTFLESLIPHVKATI 107
Query: 108 ENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFH----GFSCFCLFCHHLLGVSKV 163
+ + K + ++ D +D +F +P +F GF L + + +V
Sbjct: 108 KTILSNKVV---GLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNR-QIEEV 163
Query: 164 HENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDR---KELREQILAADKKTYGAIINT 220
++ D + NIPG+ + + + +D +L E+ + T G I+NT
Sbjct: 164 FDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERF----RDTKGIIVNT 219
Query: 221 FEELESPFIENY--KKAKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQ 278
F +LE I+ K ++ +GP +P K ++ + I L WLD Q
Sbjct: 220 FSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWLDEQP 274
Query: 279 PSSVVYVCLGSI-CNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEE- 336
SVV++C GS+ + SQ+ E+ LGL+ S F+W + EK + E F E
Sbjct: 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-------NSAEKKVFPEGFLEW 327
Query: 337 -RIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNE 395
++G+G+ I GWAPQV +L+H A+GGF++HCGWNS LE + GV +LTWP++A+Q N
Sbjct: 328 MELEGKGM-ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 396 KLIVNVLRIGVSVGVEVD 413
+V GV +G+ VD
Sbjct: 387 FRLVK--EWGVGLGLRVD 402
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/438 (28%), Positives = 203/438 (46%), Gaps = 63/438 (14%)
Query: 1 MASEASQVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVT-------TPVNAARFKTV 53
M+ + +P GHL + A+LL H + I P + K+V
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 54 IARAIKSGLQIRLI---EIQFPWQEAGIPEGCENCDLLPTTDFA--RFMKSL-HMLQQPF 107
+A S QI+LI E++ P QE LL + +F F++SL ++
Sbjct: 63 LA----SQPQIQLIDLPEVEPPPQE-----------LLKSPEFYILTFLESLIPHVKATI 107
Query: 108 ENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVPRIIFH----GFSCFCLFCHHLLGVSKV 163
+ + K + ++ D +D +F +P +F GF L + + +V
Sbjct: 108 KTILSNKVV---GLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNR-QIEEV 163
Query: 164 HENVTSDSEYFNIPGLPDHIEFTKVQLLISKRDDDR---KELREQILAADKKTYGAIINT 220
++ D + NIPG+ + + + +D +L E+ + T G I+NT
Sbjct: 164 FDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERF----RDTKGIIVNT 219
Query: 221 FEELESPFIENY--KKAKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQ 278
F +LE I+ K ++ +GP +P K ++ + I L WLD Q
Sbjct: 220 FSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLI-----LKWLDEQP 274
Query: 279 PSSVVYVCLGSI-CNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEE- 336
SVV++C GS+ + SQ+ E+ LGL+ S F+W + EK + E F E
Sbjct: 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-------NSAEKKVFPEGFLEW 327
Query: 337 -RIKGRGLLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNE 395
++G+G+ I GWAPQV +L+H A+GGF++HCGWNS LE + GV +LTWP++A+Q N
Sbjct: 328 MELEGKGM-ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNA 386
Query: 396 KLIVNVLRIGVSVGVEVD 413
+V GV +G+ VD
Sbjct: 387 FRLVK--EWGVGLGLRVD 402
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/343 (30%), Positives = 153/343 (44%), Gaps = 36/343 (10%)
Query: 77 GIPEGCENCDLLPTTDFARFMKSLHMLQQPFENLFKEKTLKP----CCIISDMCFPWTVD 132
G+P+G + P F+K++ Q+ F+++ E + C+++D F + D
Sbjct: 77 GLPKGYVSSGN-PREPIFLFIKAM---QENFKHVIDEAVAETGKNITCLVTDAFFWFGAD 132
Query: 133 TAAKFNVPRIIFHGFSCFCLFCH-------HLLGVSKVHENVTSDSEYFNIPGLPDHIEF 185
A + + + L H G +VH+ + D +PG P+
Sbjct: 133 LAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDV----LPGFPELKAS 188
Query: 186 TKVQLLISKRDDDRKELREQILAADKKTYGAIINTFEELESPFIENYKKAKQGKVWCIGP 245
+ +I D + ++ + IN+F + P IEN +K + +GP
Sbjct: 189 DLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIH-PLIENELNSKFKLLLNVGP 247
Query: 246 ASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYVCLGSICNLPSSQLIELGLGL 305
+L + E G CL WLD + SSVVY+ GS+ P +L L L
Sbjct: 248 FNLTTPQRKVSDEHG---------CLEWLDQHENSSVVYISFGSVVTPPPHELTALAESL 298
Query: 306 EASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRGLLIRGWAPQVLILSHPAVGGFLT 365
E PF+W RG K E L K F ER K +G ++ WAPQV IL H +VG FLT
Sbjct: 299 EECGFPFIWSFRGDPK-EKLPK-----GFLERTKTKGKIV-AWAPQVEILKHSSVGVFLT 351
Query: 366 HCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVSV 408
H GWNS LE I GV M++ P F DQ N L +VL IGV V
Sbjct: 352 HSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV 394
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 348 WAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNVLRIGVS 407
W PQ +L HP F+TH G N E I G+ + PLFADQ N I + G +
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN---IAHXKARGAA 131
Query: 408 VGVEVDLPITT 418
V V+ + +T
Sbjct: 132 VRVDFNTXSST 142
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 345 IRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVNV 401
+ W PQ+ IL+ F+TH G S++E +S V M+ P A+Q N + IV +
Sbjct: 309 VHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 345 IRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLI 398
+ W PQ+ IL + F+TH G S EG++ M+ P DQF N ++
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 31/172 (18%)
Query: 226 SPFIENYKKAKQGKVWCIGPASLCNKEPIDKAERGKTASIDVPECLTWLDSQQPSSVVYV 285
+PFI+ + + Q + P P+ AE+G D+P L+ D+ +P +VY+
Sbjct: 196 NPFIDIFPPSLQEPEFRARPRR-HELRPVPFAEQG-----DLPAWLSSRDTARP--LVYL 247
Query: 286 CLGSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALEKWLVQENFEERIKGRG--- 342
LG+ S +E+ L A+ I G++ L+A LV + G G
Sbjct: 248 TLGTS----SGGTVEV---LRAA-------IDGLAGLDA--DVLVASGPSLDVSGLGEVP 291
Query: 343 --LLIRGWAPQVLILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQF 392
+ + W PQ +L H V + H G ++L + AGV L++P D F
Sbjct: 292 ANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
pdb|4ILK|B Chain B, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
Length = 359
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 104 QQPFENLFKEKTLKPCCIISDMCFPWTVDTAAKFNVP--RIIFHGFS 148
Q P F EK +KP II C P + A P RI+ GFS
Sbjct: 235 QTPLGESFAEKGIKPTLIIDAACHPSILKEAVTLASPAARIVLMGFS 281
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 137 FNVPRIIFHGFSCFCLFCHHLLGVSKVHENVTSDSEYFNIPGLPDHI-----EFTKVQL- 190
+NV R H ++ +C+ + G +V E V+ D+E + P H +T V +
Sbjct: 385 YNVTRC--HSYNLTVHYCYQVGGQEQVREEVSWDTENSH----PQHTITNLSPYTNVSVK 438
Query: 191 LISKRDDDRKELREQILAADKKTYGAII------NTFEE 223
LI + RKE +E I+ D+ GA+ +TFEE
Sbjct: 439 LILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEE 477
>pdb|2HSD|A Chain A, The Refined Three-Dimensional Structure Of 3alpha,20beta-
Hydroxysteroid Dehydrogenase And Possible Roles Of The
Residues Conserved In Short-Chain Dehydrogenases
pdb|2HSD|B Chain B, The Refined Three-Dimensional Structure Of 3alpha,20beta-
Hydroxysteroid Dehydrogenase And Possible Roles Of The
Residues Conserved In Short-Chain Dehydrogenases
pdb|2HSD|C Chain C, The Refined Three-Dimensional Structure Of 3alpha,20beta-
Hydroxysteroid Dehydrogenase And Possible Roles Of The
Residues Conserved In Short-Chain Dehydrogenases
pdb|2HSD|D Chain D, The Refined Three-Dimensional Structure Of 3alpha,20beta-
Hydroxysteroid Dehydrogenase And Possible Roles Of The
Residues Conserved In Short-Chain Dehydrogenases
Length = 253
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 288 GSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALE 326
GSI N+ S+ + +GL L +S W +RG+SKL A+E
Sbjct: 131 GSIVNISSAAGL-MGLALTSSYGASKWGVRGLSKLAAVE 168
>pdb|1HDC|A Chain A, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid
Dehydrogenase By A Licorice-Derived Steroidal Inhibitor
pdb|1HDC|B Chain B, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid
Dehydrogenase By A Licorice-Derived Steroidal Inhibitor
pdb|1HDC|C Chain C, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid
Dehydrogenase By A Licorice-Derived Steroidal Inhibitor
pdb|1HDC|D Chain D, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid
Dehydrogenase By A Licorice-Derived Steroidal Inhibitor
Length = 254
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 288 GSICNLPSSQLIELGLGLEASNKPFVWVIRGVSKLEALE 326
GSI N+ S+ + +GL L +S W +RG+SKL A+E
Sbjct: 131 GSIVNISSAAGL-MGLALTSSYGASKWGVRGLSKLAAVE 168
>pdb|2RJI|A Chain A, Malarial Eba-175 Region Vi Crystallographic Structure
Reveals A Kix-Like Binding Interface
pdb|2RJI|B Chain B, Malarial Eba-175 Region Vi Crystallographic Structure
Reveals A Kix-Like Binding Interface
Length = 84
Score = 31.6 bits (70), Expect = 0.88, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 101 HMLQQ--PFENLFKEKTLKPCCIISDMCFPW-TVDTAAKFNVPRIIFH--GFSCF 150
HM+ + P + KEKT CC +SD C + T D+ ++ + F ++CF
Sbjct: 29 HMIHEEIPLKTCTKEKTRNLCCAVSDYCMSYFTYDSEEYYDCTKREFDDPSYTCF 83
>pdb|3GB5|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn
pdb|3GFD|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Mono-Iodotyrosine (Mit)
pdb|3GFD|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Mono-Iodotyrosine (Mit)
pdb|3GH8|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|C Chain C, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|D Chain D, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|E Chain E, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|F Chain F, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|G Chain G, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
pdb|3GH8|H Chain H, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) Bound To Fmn And Di-Iodotyrosine (Dit)
Length = 259
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 33 QHGAIVTIVTTPVN-AARFKTVIARAIKSGLQIRLIEIQFPWQEAGIPE 80
Q+ +VT+ TTP+N R + ++ R L + L+ + +P ++A +P+
Sbjct: 193 QNAGLVTVTTTPLNCGPRLRVLLGRPSHEKLLV-LLPVGYPSRDATVPD 240
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 7 QVHFLLLPYLAPGHLIPMFDIARLLAQHGAIVTIVTTPVNAARFKTVIARAI 58
Q H L GH+ P + LA+ G +T VTTP+ A K A +
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVV 55
>pdb|3CF4|A Chain A, Structure Of The Codh Component Of The M. Barkeri Acds
Complex
Length = 807
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 294 PSSQLIELGLGLEASNKPFVWVI-RGVSKLEALEKWLVQENFEERIKGRGL 343
P + L+E+G+G +KPF+ VI V+ + + ++ N ++++ GL
Sbjct: 226 PEAPLVEIGMGTIDKSKPFLCVIGHNVAGVTYMMDYMEDNNLTDKMEIAGL 276
>pdb|3TNZ|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TNZ|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn And Mono-Iodotyrosine
(Mit)
pdb|3TO0|A Chain A, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
pdb|3TO0|B Chain B, Crystal Structure Of Mus Musculus Iodotyrosine Deiodinase
(Iyd) C217a, C239a Bound To Fmn
Length = 259
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 38 VTIVTTPVNAA-RFKTVIARAIKSGLQIRLIEIQFPWQEAGIPE 80
VT+ TTP+NA R + ++ R L + L+ + +P ++A +P+
Sbjct: 198 VTVTTTPLNAGPRLRVLLGRPSHEKLLV-LLPVGYPSRDATVPD 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,686,451
Number of Sequences: 62578
Number of extensions: 521629
Number of successful extensions: 1204
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1176
Number of HSP's gapped (non-prelim): 22
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)